671 112 9 19 chrX 1 108 -176974032 + MLT1A1 LTR MaLR 260 365 0 1400 147 4 0 chrX 108 339 -176973801 + MLT1B LTR MaLR 158 389 -1 551 211 265 0 chrX 340 525 -176973615 + L1MB4 LINE L1 5906 6139 -41 1872 146 0 23 chrX 530 831 -176973309 - AluJo SINE Alu -15 297 4 3752 130 0 8 chrX 1434 1963 -176972177 + MER1A DNA MER1_type 3 527 0 1909 174 3 0 chrX 2120 2408 -176971732 + AluJb SINE Alu 2 290 -22 2210 121 3 0 chrX 2445 2742 -176971398 + AluSq SINE Alu 1 298 -15 905 115 0 8 chrX 2742 2872 -176971268 + AluSg/x SINE Alu 158 286 -24 258 32 0 0 chrX 2908 2939 -176971201 + (TG)n Simple_repeat Simple_repeat 1 31 0 903 136 34 20 chrX 2940 3087 -176971053 - AluSq/x SINE Alu -164 149 1 204 40 0 0 chrX 3186 3211 -176970929 + (T)n Simple_repeat Simple_repeat 1 25 0 2531 63 0 0 chrX 3236 3535 -176970605 - AluY SINE Alu -12 299 1 189 0 0 0 chrX 3566 3587 -176970553 + (A)n Simple_repeat Simple_repeat 1 21 0 2171 105 3 7 chrX 4038 4355 -176969785 - AluSx SINE Alu 0 316 1 783 126 0 77 chrX 4594 4737 -176969403 - FLAM_C SINE Alu -1 132 1 21 57 0 0 chrX 4743 4778 -176969362 + AT_rich Low_complexity Low_complexity 1 35 0 1505 128 8 16 chrX 4794 5044 -176969096 - L1MC1 LINE L1 0 6333 6086 235 281 45 0 chrX 5072 5161 -176968979 + L1MEc LINE L1 1262 1354 -5042 2142 144 0 0 chrX 5521 5827 -176968313 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 5899 5921 -176968219 + AT_rich Low_complexity Low_complexity 1 22 0 2358 112 49 0 chrX 6146 6198 -176967942 - THE1B LTR MaLR 0 364 316 2366 70 0 7 chrX 6198 6485 -176967655 - AluY SINE Alu -11 300 16 2358 112 49 0 chrX 6485 6779 -176967361 - THE1B LTR MaLR -48 316 1 402 336 24 24 chrX 6986 7236 -176966904 + L1MEc LINE L1 2302 2551 -3664 885 150 0 0 chrX 7243 7376 -176966764 + FLAM_C SINE Alu 1 133 0 2042 133 20 3 chrX 7735 8036 -176966104 - AluSx SINE Alu -6 306 1 369 0 0 0 chrX 8784 8825 -176965315 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 42 0 0 chrX 9307 9331 -176964809 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3532 65 5 0 chrX 9383 9828 -176964312 + L1PA10 LINE L1 5718 6164 -4 2003 134 35 15 chrX 9993 10336 -176963804 + L1PB4 LINE L1 5804 6153 -3 188 61 61 0 chrX 10580 10613 -176963527 + T-rich Low_complexity Low_complexity 2 36 0 1827 169 0 19 chrX 10870 11288 -176962852 + AluJb SINE Alu 1 412 0 367 73 36 0 chrX 11341 11396 -176962744 - Alu SINE Alu -5 297 241 319 193 23 11 chrX 11402 11490 -176962650 + CT-rich Low_complexity Low_complexity 4 92 0 1771 181 0 7 chrX 11493 11797 -176962343 - AluJb SINE Alu -10 302 1 2209 173 18 3 chrX 11858 12240 -176961900 + MLT1B LTR MaLR 3 390 0 1346 167 116 29 chrX 12321 12555 -176961585 - AluJo SINE Alu -13 299 36 5044 94 0 0 chrX 12555 13215 -176960925 + PABL_A LTR ERV1 1 660 0 1346 167 116 29 chrX 13215 13255 -176960885 - AluJo SINE Alu -276 36 1 247 264 16 48 chrX 13555 13680 -176960460 + L1ME LINE L1 5691 5811 -359 785 153 0 0 chrX 14088 14206 -176959934 + FLAM_C SINE Alu 1 118 -15 1156 203 14 22 chrX 14229 14451 -176959689 + AluJo SINE Alu 1 220 -92 290 118 0 39 chrX 14451 14502 -176959638 + AluSg/x SINE Alu 84 132 -168 32 26 0 0 chrX 14502 14541 -176959599 + AT_rich Low_complexity Low_complexity 1 39 0 978 137 27 0 chrX 14551 14734 -176959406 + L1MA4 LINE L1 6107 6294 -6 2113 117 0 0 chrX 14752 15034 -176959106 - AluSx SINE Alu -30 282 1 23 0 0 0 chrX 15041 15064 -176959076 + AT_rich Low_complexity Low_complexity 1 23 0 558 229 12 59 chrX 15967 16137 -176958003 - MER20 DNA MER1_type -42 177 16 1702 174 35 0 chrX 16209 16331 -176957809 + AluJo SINE Alu 1 117 -195 186 43 0 0 chrX 16331 16354 -176957786 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1702 174 35 0 chrX 16354 16518 -176957622 + AluJo SINE Alu 117 297 -15 28 29 0 0 chrX 16684 16719 -176957421 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chrX 17065 17093 -176957047 + AT_rich Low_complexity Low_complexity 1 28 0 349 246 118 43 chrX 17477 17664 -176956476 + L1ME1 LINE L1 5736 5936 -230 2486 85 0 3 chrX 18418 18725 -176955415 - AluSg SINE Alu -4 306 1 2361 95 3 0 chrX 18957 19262 -176954878 - AluSp SINE Alu -7 306 1 616 155 35 113 chrX 19495 19637 -176954503 + FLAM_C SINE Alu 2 132 -11 5024 109 7 0 chrX 19661 20376 -176953764 + L1PA11 LINE L1 5445 6164 -10 2057 135 0 22 chrX 20379 20665 -176953475 + AluSx SINE Alu 1 281 -31 189 0 0 0 chrX 20665 20686 -176953454 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2057 135 0 22 chrX 20686 20718 -176953422 + AluSx SINE Alu 281 312 0 2727 28 9 0 chrX 20785 21104 -176953036 + L1PA4 LINE L1 5831 6152 -3 24 53 0 0 chrX 21104 21142 -176952998 + AT_rich Low_complexity Low_complexity 1 38 0 1958 141 3 13 chrX 21577 21876 -176952264 + AluSq SINE Alu 18 313 0 257 75 25 0 chrX 21909 21949 -176952191 + (GAA)n Simple_repeat Simple_repeat 2 42 0 262 228 0 0 chrX 21966 22023 -176952117 - MIR SINE MIR -146 116 60 1351 190 52 14 chrX 22128 22261 -176951879 + AluJo SINE Alu 3 129 -183 2160 110 14 0 chrX 22261 22551 -176951589 + AluSx SINE Alu 1 294 -18 1351 190 52 14 chrX 22551 22706 -176951434 + AluJo SINE Alu 129 302 -10 445 172 16 0 chrX 22790 22912 -176951228 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 256 100 0 40 chrX 22916 22966 -176951174 + MLT2B1 LTR ERVL 458 505 -15 581 208 32 19 chrX 22999 23153 -176950987 + L1M4 LINE L1 5071 5226 -920 550 195 140 30 chrX 23716 23880 -176950260 + MLT1C LTR MaLR 1 182 -285 546 242 73 28 chrX 23926 24104 -176950036 + MLT1C LTR MaLR 172 357 -110 1846 150 10 30 chrX 24125 24425 -176949715 + AluJb SINE Alu 1 294 -18 768 170 0 7 chrX 24524 24659 -176949481 + FRAM SINE Alu 42 175 -1 310 339 0 17 chrX 24772 24887 -176949253 - MER5A DNA MER1_type 0 189 77 813 181 0 8 chrX 24939 25072 -176949068 - FLAM_C SINE Alu -1 132 1 272 253 0 44 chrX 25190 25281 -176948859 - L1MC4 LINE L1 -13 8029 7943 2197 138 43 0 chrX 25353 25702 -176948438 - THE1B LTR MaLR 0 364 1 10878 107 36 1 chrX 25702 27228 -176946912 - THE1B-int LTR MaLR 0 1580 1 2352 133 23 0 chrX 27228 27582 -176946558 - THE1B LTR MaLR 0 364 3 882 153 0 14 chrX 27656 27800 -176946340 + FLAM_C SINE Alu 1 142 -1 493 227 169 7 chrX 27808 27962 -176946178 - L1MC4 LINE L1 -285 7757 7579 286 164 30 0 chrX 27971 28038 -176946102 - L1MB4 LINE L1 0 6180 6112 336 200 0 0 chrX 28114 28174 -176945966 - L1MB4 LINE L1 -55 6125 6066 1233 141 0 0 chrX 28183 28360 -176945780 + AluSg/x SINE Alu 136 312 0 1153 253 88 40 chrX 28413 28935 -176945205 + L1ME1 LINE L1 4767 5313 -833 1941 141 0 3 chrX 28936 29262 -176944878 - AluSx SINE Alu 0 325 1 2108 134 0 10 chrX 29270 29575 -176944565 + AluSx SINE Alu 1 302 -10 1788 239 34 60 chrX 29575 29925 -176944215 + L1ME1 LINE L1 5595 5953 -381 1976 107 61 151 chrX 29925 30139 -176944001 - Tigger2a DNA MER2_type -2274 434 285 2005 154 13 0 chrX 30139 30445 -176943695 + AluJo SINE Alu 1 310 -2 1976 107 61 151 chrX 30445 30707 -176943433 - Tigger2a DNA MER2_type -2423 285 1 1788 239 34 60 chrX 30707 30958 -176943182 + L1ME1 LINE L1 5953 6334 0 572 184 14 40 chrX 31077 31434 -176942706 + (TATATG)n Simple_repeat Simple_repeat 1 347 0 477 216 3 55 chrX 31458 31730 -176942410 + (TATATG)n Simple_repeat Simple_repeat 1 375 -39 722 198 0 0 chrX 31730 31856 -176942284 + FLAM_C SINE Alu 1 126 -7 477 216 3 55 chrX 31856 31895 -176942245 + (TATATG)n Simple_repeat Simple_repeat 375 414 0 234 121 35 35 chrX 31899 31957 -176942183 + L1MCa LINE L1 2006 2063 -4363 520 208 4 28 chrX 31957 32203 -176941937 + (TATATG)n Simple_repeat Simple_repeat 1 240 0 220 295 16 0 chrX 32206 32267 -176941873 + (TATG)n Simple_repeat Simple_repeat 1 62 0 496 240 6 6 chrX 32268 32443 -176941697 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 1765 161 11 0 chrX 32758 33044 -176941096 - AluJo SINE Alu 0 312 24 1015 262 62 54 chrX 33413 33909 -176940231 + LTR1B LTR ERV1 25 524 -302 602 188 14 76 chrX 34014 34158 -176939982 + HUERS-P2 LTR ERV1 2 136 -2952 * 2836 207 37 40 chrX 34129 34728 -176939412 + HUERS-P2 LTR ERV1 616 1212 -1876 1718 196 10 3 chrX 34722 35023 -176939117 + HUERS-P2 LTR ERV1 1079 1381 -1707 * 2445 188 53 9 chrX 35022 35571 -176938569 + HUERS-P2 LTR ERV1 2467 3074 -14 973 229 113 91 chrX 35572 36136 -176938004 + LTR1B LTR ERV1 10 589 -237 977 191 0 0 chrX 36233 36390 -176937750 - AluJb SINE Alu -20 292 136 893 179 14 82 chrX 36390 36709 -176937431 - L1MA4 LINE L1 -27 6273 6011 23 0 0 0 chrX 36862 36885 -176937255 + AT_rich Low_complexity Low_complexity 1 23 0 743 149 9 0 chrX 36885 36999 -176937141 - FLAM_C SINE Alu -24 119 5 407 207 73 29 chrX 37452 37535 -176936605 + LTR8 LTR ERV1 1 74 -467 219 36 0 0 chrX 37535 37563 -176936577 + (TTG)n Simple_repeat Simple_repeat 3 30 0 407 207 73 29 chrX 37563 37639 -176936501 + LTR8 LTR ERV1 74 145 -396 1687 189 7 0 chrX 37755 38056 -176936084 + AluJo SINE Alu 5 307 -5 872 194 20 30 chrX 38289 38490 -176935650 + MER20 DNA MER1_type 1 199 -20 746 128 0 115 chrX 40134 40342 -176933798 - FLAM_C SINE Alu 0 191 1 264 234 26 13 chrX 40693 40770 -176933370 + (TA)n Simple_repeat Simple_repeat 2 79 0 358 259 29 3 chrX 40803 41159 -176932981 + (TA)n Simple_repeat Simple_repeat 1 365 0 267 189 54 34 chrX 41119 41167 -176932973 + (TTATA)n Simple_repeat Simple_repeat 1 47 -104 * 872 150 0 0 chrX 41167 41300 -176932840 - FLAM_C SINE Alu 0 133 1 267 189 54 34 chrX 41300 41399 -176932741 + (TTATA)n Simple_repeat Simple_repeat 47 151 0 262 219 14 41 chrX 41730 41803 -176932337 - MER116 DNA Mariner -2 78 8 2319 99 0 0 chrX 41882 42175 -176931965 - AluSx SINE Alu -19 293 1 180 158 0 0 chrX 42220 42258 -176931882 + T-rich Low_complexity Low_complexity 1 38 0 2008 143 0 0 chrX 42259 42575 -176931565 - AluSx SINE Alu 0 316 1 1597 179 66 0 chrX 42698 42971 -176931169 - AluJo SINE Alu -21 291 1 770 157 8 8 chrX 42971 43105 -176931035 - AluJo SINE Alu -176 136 3 821 136 0 0 chrX 43186 43304 -176930836 + AluJb SINE Alu 10 127 -185 2118 124 6 16 chrX 43950 44265 -176929875 + AluJo SINE Alu 1 312 0 254 93 23 0 chrX 44545 44588 -176929552 + MADE1 DNA Mariner 1 44 -36 621 146 9 125 chrX 44770 44982 -176929158 - MER4A LTR ERV1 -158 506 261 508 165 21 10 chrX 44982 45079 -176929061 - MER4A LTR ERV1 -566 98 1 2213 105 3 7 chrX 45481 45786 -176928354 - MER4E LTR ERV1 0 766 463 1047 57 0 29 chrX 45789 45929 -176928211 + AluSg/x SINE Alu 175 310 0 2960 127 31 27 chrX 45931 46420 -176927720 - MER4E LTR ERV1 -288 491 1 500 129 0 12 chrX 46771 46856 -176927284 - AluJ/FLAM SINE Alu -227 85 2 2905 13 0 0 chrX 47451 47806 -176926334 - AluY SINE Alu 0 355 1 740 191 0 22 chrX 47884 48020 -176926120 - FLAM_C SINE Alu 0 133 1 1668 174 37 7 chrX 48786 49085 -176925055 - AluJb SINE Alu 0 312 5 1875 185 0 6 chrX 49742 50056 -176924084 - AluJb SINE Alu 0 312 1 2273 123 0 0 chrX 50059 50367 -176923773 - AluSx SINE Alu -4 308 1 1429 143 31 109 chrX 50443 50561 -176923579 + AluJo SINE Alu 18 144 -168 2458 75 0 0 chrX 50561 50853 -176923287 - AluY SINE Alu -18 293 2 1429 143 31 109 chrX 50853 51027 -176923113 + AluJo SINE Alu 144 287 -25 2295 91 0 10 chrX 51030 51337 -176922803 + AluSx SINE Alu 1 304 -8 1849 154 0 36 chrX 51745 52051 -176922089 - AluJo SINE Alu -17 295 1 720 136 0 64 chrX 52455 52595 -176921545 - FLAM_C SINE Alu 0 133 3 2427 181 13 63 chrX 52600 53151 -176920989 + MER74A LTR ERVL 23 545 -13 2240 106 0 0 chrX 53198 53505 -176920635 + AluSx SINE Alu 1 307 0 650 240 6 11 chrX 53552 53727 -176920413 + MER5B DNA MER1_type 1 174 -4 1840 167 0 20 chrX 53775 54074 -176920066 + AluJo SINE Alu 4 296 -16 998 210 0 0 chrX 54074 54250 -176919890 + AluJb SINE Alu 134 309 -3 900 137 0 8 chrX 54840 54971 -176919169 + FLAM_C SINE Alu 4 133 -10 24 0 0 0 chrX 54971 54995 -176919145 + AT_rich Low_complexity Low_complexity 1 24 0 841 164 7 7 chrX 55172 55324 -176918816 + MLT1A1 LTR MaLR 1 152 -213 949 111 0 15 chrX 55327 55462 -176918678 + FLAM_C SINE Alu 1 133 0 29 94 0 0 chrX 55834 55919 -176918221 + AT_rich Low_complexity Low_complexity 1 85 0 1683 161 0 81 chrX 55978 56300 -176917840 - AluJb SINE Alu -16 296 1 837 230 148 19 chrX 56625 56943 -176917197 + MLT1D LTR MaLR 1 359 -146 969 160 10 35 chrX 56946 57008 -176917132 - MLT1B LTR MaLR -195 195 133 2553 104 28 6 chrX 57008 57364 -176916776 - THE1B LTR MaLR 0 364 1 969 160 10 35 chrX 57364 57501 -176916639 - MLT1B LTR MaLR -257 133 1 * 988 266 76 6 chrX 57501 57854 -176916286 + MLT1C LTR MaLR 88 465 -2 2025 130 0 27 chrX 58563 58864 -176915276 + AluSx SINE Alu 1 293 -19 1513 181 46 11 chrX 59003 59284 -176914856 + AluJo SINE Alu 1 291 -21 2105 144 7 0 chrX 59654 59953 -176914187 - AluSx SINE Alu -11 301 1 930 119 0 22 chrX 60044 60178 -176913962 - FLAM_C SINE Alu -2 131 1 1720 183 0 3 chrX 60585 60892 -176913248 - AluJo SINE Alu 0 306 1 1106 141 0 0 chrX 60954 61117 -176913023 + AluSg/x SINE Alu 131 293 -19 1905 133 0 73 chrX 61141 61471 -176912669 + AluJb SINE Alu 6 311 -1 241 167 42 0 chrX 62102 62150 -176911990 + MLT1D LTR MaLR 1 50 -455 327 83 42 0 chrX 62151 62199 -176911941 + MLT1D LTR MaLR 1 50 -455 303 125 42 0 chrX 62200 62248 -176911892 + MLT1D LTR MaLR 1 50 -455 335 303 80 42 chrX 62356 62620 -176911520 + L2 LINE L2 2703 2976 -338 579 159 0 37 chrX 62731 62894 -176911246 + CT-rich Low_complexity Low_complexity 3 159 0 222 314 35 23 chrX 62948 63034 -176911106 + L2 LINE L2 3137 3223 -49 2511 81 0 0 chrX 63310 63620 -176910520 - AluSg SINE Alu 0 310 1 1674 174 14 0 chrX 63620 63896 -176910244 - AluJo SINE Alu -32 280 1 2368 115 0 0 chrX 64022 64334 -176909806 - AluSx SINE Alu 0 312 1 3967 105 86 21 chrX 64893 65202 -176908938 - PABL_A LTR ERV1 0 660 372 2284 107 0 0 chrX 65202 65528 -176908612 + AluSx SINE Alu 1 326 0 3967 105 86 21 chrX 65528 65836 -176908304 - PABL_A LTR ERV1 -288 372 2 270 189 0 0 chrX 65842 65895 -176908245 - L1MB7 LINE L1 -61 6123 6071 2773 121 23 35 chrX 65895 66239 -176907901 - MER4E LTR ERV1 0 766 419 2523 94 0 0 chrX 66239 66546 -176907594 + AluSx SINE Alu 1 307 -5 2773 121 23 35 chrX 66546 66807 -176907333 - MER4E LTR ERV1 -347 419 1 1791 157 10 13 chrX 66830 67135 -176907005 - AluJb SINE Alu 0 312 9 343 143 39 0 chrX 67143 67220 -176906920 - L1MB7 LINE L1 -109 6075 5996 921 143 0 29 chrX 67268 67408 -176906732 - AluJo SINE Alu -176 136 1 598 212 97 0 chrX 67415 67580 -176906560 - L1MB7 LINE L1 -218 5966 5786 2420 99 10 0 chrX 67626 67929 -176906211 + AluSx SINE Alu 1 306 -6 392 265 5 134 chrX 67975 68364 -176905776 - HsTC2 DNA Tc2 -21 1877 1539 * 956 294 73 12 chrX 68361 68769 -176905371 - MLT1C LTR MaLR -30 437 5 813 233 149 19 chrX 68784 69093 -176905047 - MLT1D LTR MaLR -145 360 12 329 217 13 16 chrX 69115 69254 -176904886 - MLT1C LTR MaLR -145 360 192 180 163 0 0 chrX 69394 69437 -176904703 + GA-rich Low_complexity Low_complexity 2 44 0 4099 77 16 12 chrX 69802 70375 -176903765 - PABL_B LTR ERV1 0 667 93 2439 94 0 0 chrX 70375 70682 -176903458 - AluSx SINE Alu -5 307 1 253 286 0 0 chrX 71375 71431 -176902709 + (CA)n Simple_repeat Simple_repeat 1 56 0 1820 104 101 17 chrX 71455 71742 -176902398 - AluSx SINE Alu -1 311 1 720 153 65 32 chrX 71747 71871 -176902269 - FLAM_C SINE Alu -14 129 2 1073 82 109 0 chrX 71964 72111 -176902029 + AluSg/x SINE Alu 149 311 -1 1564 239 28 0 chrX 72135 72528 -176901612 - L1MB5 LINE L1 -49 6125 5722 1545 161 24 31 chrX 73041 73332 -176900808 + AluJb SINE Alu 24 312 0 1970 129 6 55 chrX 73436 73762 -176900378 + AluSx SINE Alu 1 310 -2 959 226 26 44 chrX 74205 74405 -176899735 - MLT1B LTR MaLR -15 375 180 2270 113 7 3 chrX 74405 74715 -176899425 - AluSx SINE Alu -1 311 1 959 226 26 44 chrX 74715 74784 -176899356 - MLT1B LTR MaLR -210 180 111 1325 188 82 41 chrX 75092 75384 -176898756 + AluJo SINE Alu 1 304 -8 263 200 0 43 chrX 75385 75455 -176898685 + GA-rich Low_complexity Low_complexity 1 67 0 1739 164 13 20 chrX 76056 76354 -176897786 - AluJo SINE Alu -13 299 4 928 190 15 41 chrX 76848 77043 -176897097 + AluJo SINE Alu 1 190 -122 1338 82 0 22 chrX 77588 77793 -176896347 + AluSg/x SINE Alu 118 310 0 2393 99 0 3 chrX 77968 78281 -176895859 - AluSx SINE Alu 0 312 1 21 57 0 0 chrX 78525 78560 -176895580 + GC_rich Low_complexity Low_complexity 1 35 0 244 252 0 66 chrX 78760 78896 -176895244 + GA-rich Low_complexity Low_complexity 3 211 0 233 211 18 0 chrX 78989 79046 -176895094 + (CCCCG)n Simple_repeat Simple_repeat 2 59 0 2887 141 90 52 chrX 79695 80202 -176893938 - MER51A LTR ERV1 -9 625 90 1729 115 20 112 chrX 80202 80551 -176893589 + AluYb8 SINE Alu 2 318 0 2887 141 90 52 chrX 80551 80645 -176893495 - MER51A LTR ERV1 -544 90 1 422 202 53 0 chrX 80914 81008 -176893132 + AluSg/x SINE Alu 208 306 -3 632 200 40 23 chrX 81008 81211 -176892929 - LTR54B LTR ERV1 -181 329 52 5014 91 3 3 chrX 81211 81871 -176892269 + PABL_A LTR ERV1 1 660 0 632 200 40 23 chrX 81871 81912 -176892228 - LTR54B LTR ERV1 -458 52 13 923 237 88 9 chrX 82359 82676 -176891464 - MLT1C LTR MaLR -32 435 94 912 187 44 6 chrX 82684 82866 -176891274 + MLT1B LTR MaLR 1 189 -201 634 265 95 30 chrX 82848 83193 -176890947 - MLT1C LTR MaLR -98 369 1 * 1955 140 0 3 chrX 83460 83746 -176890394 + AluJb SINE Alu 1 285 -27 597 230 13 13 chrX 83813 83965 -176890175 - L1MB8 LINE L1 -22 6156 6005 1857 158 10 49 chrX 83975 84302 -176889838 + MLT1B LTR MaLR 12 323 -67 2081 130 37 0 chrX 84302 84602 -176889538 - AluJb SINE Alu -1 311 1 1857 158 10 49 chrX 84602 84661 -176889479 + MLT1B LTR MaLR 323 383 -7 592 223 1 7 chrX 84666 84805 -176889335 - L1MB7 LINE L1 -192 5992 5876 2352 97 0 25 chrX 84884 85241 -176888899 - AluSx SINE Alu 0 349 1 1083 211 78 14 chrX 85248 85532 -176888608 + LTR52 LTR ERVL 23 324 -97 180 0 0 0 chrX 85537 85557 -176888583 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 216 0 0 0 chrX 85556 85580 -176888560 + (GA)n Simple_repeat Simple_repeat 1 24 0 290 177 16 16 chrX 86091 86153 -176887987 - MER4D LTR ERV1 -8 895 834 332 97 58 19 chrX 86211 86314 -176887826 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 358 132 54 38 chrX 86359 86620 -176887520 + (TAGA)n Simple_repeat Simple_repeat 1 265 0 563 219 17 62 chrX 86646 86824 -176887316 - MER20 DNA MER1_type -2 217 48 264 77 0 0 chrX 86854 86893 -176887247 + (TAGG)n Simple_repeat Simple_repeat 1 39 0 200 140 70 0 chrX 86902 86959 -176887181 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 1334 95 0 0 chrX 87259 87427 -176886713 + AluSg/x SINE Alu 137 304 -8 2290 230 48 11 chrX 87752 88291 -176885849 - MER68 LTR ERV1 -2 560 2 2015 137 0 10 chrX 88648 88941 -176885199 - AluSx SINE Alu -1 311 22 2388 53 40 7 chrX 89024 89325 -176884815 - AluY SINE Alu 0 311 1 1679 192 10 0 chrX 90023 90320 -176883820 + AluJo SINE Alu 1 300 -12 1882 157 124 122 chrX 90529 90542 -176883598 - L1MA4A LINE L1 -6 6297 6286 1218 186 103 73 chrX 90542 90843 -176883297 - AluJo SINE Alu -2 310 1 1882 157 124 122 chrX 90843 91288 -176882852 - L1MA4A LINE L1 -17 6286 5843 1765 158 3 27 chrX 91288 91586 -176882554 - AluSx SINE Alu -21 291 1 1882 157 124 122 chrX 91586 91638 -176882502 - L1MA4A LINE L1 -460 5843 5793 2195 128 0 0 chrX 91638 91944 -176882196 - AluJb SINE Alu -6 306 1 1882 157 124 122 chrX 91944 92062 -176882078 - L1MA4A LINE L1 -510 5793 5666 2278 108 0 0 chrX 92347 92642 -176881498 + AluSx SINE Alu 9 303 -9 1608 176 8 0 chrX 92646 92901 -176881239 + AluJb SINE Alu 26 282 -30 1835 148 13 44 chrX 93258 93576 -176880564 + AluJo SINE Alu 5 312 0 2340 133 75 8 chrX 93658 94057 -176880083 - MSTA LTR MaLR 0 428 3 3313 114 110 9 chrX 94290 94844 -176879296 + MER4B LTR ERV1 1 610 0 2413 141 31 9 chrX 95202 95627 -176878513 - MER4E LTR ERV1 -1 778 345 832 105 3 238 chrX 95620 95641 -176878499 - MER4D LTR ERV1 -653 219 195 * 2114 130 3 13 chrX 95641 95940 -176878200 - AluJb SINE Alu -16 296 1 832 105 3 238 chrX 95940 96097 -176878043 - MER4D LTR ERV1 -677 195 3 2562 75 0 0 chrX 96097 96405 -176877735 - AluY SINE Alu -3 308 1 2048 128 7 3 chrX 96415 96704 -176877436 - AluSx SINE Alu -22 290 1 832 105 3 238 chrX 96704 96799 -176877341 - MER4D LTR ERV1 -755 117 1 285 290 45 52 chrX 97223 97378 -176876762 - L2 LINE L2 -1 3312 3159 72 89 0 0 chrX 97378 97569 -176876571 + AT_rich Low_complexity Low_complexity 1 191 0 1184 102 0 0 chrX 98021 98033 -176876107 - AluSg/x SINE Alu -2 310 299 421 81 0 0 chrX 98033 98095 -176876045 - L1PB1 LINE L1 0 6151 6090 1184 102 0 0 chrX 98095 98248 -176875892 - AluSg/x SINE Alu -12 300 145 1915 146 10 0 chrX 98307 98609 -176875531 + AluSx SINE Alu 1 305 -7 207 0 0 0 chrX 98690 98713 -176875427 + (TG)n Simple_repeat Simple_repeat 1 23 0 426 228 39 63 chrX 98721 98848 -176875292 - MLT1G1 LTR MaLR -8 587 464 228 91 36 91 chrX 99092 99122 -176875018 - MLT2B2 LTR ERVL -6 509 482 471 118 0 0 chrX 99122 99198 -176874942 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 228 91 36 91 chrX 99198 99222 -176874918 - MLT2B2 LTR ERVL -33 482 458 180 0 0 0 chrX 99258 99278 -176874862 + (GA)n Simple_repeat Simple_repeat 1 20 0 544 82 47 31 chrX 99294 99562 -176874578 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 601 141 28 34 chrX 99586 99763 -176874377 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 1914 102 0 25 chrX 100650 100962 -176873178 - AluSx SINE Alu 0 309 5 1755 161 7 20 chrX 101352 101657 -176872483 + AluJb SINE Alu 1 301 -11 364 288 68 27 chrX 101737 101883 -176872257 - MLT1J LTR MaLR -153 358 207 21 36 0 0 chrX 102862 102890 -176871250 + AT_rich Low_complexity Low_complexity 1 28 0 391 252 78 9 chrX 103110 103225 -176870915 - MLT1J LTR MaLR -153 358 236 360 183 49 24 chrX 103418 103500 -176870640 + MLT1H LTR MaLR 52 135 -420 536 219 214 26 chrX 104044 104236 -176869904 - MLT1J LTR MaLR -46 465 238 481 275 24 24 chrX 104429 104596 -176869544 + MLT1H LTR MaLR 94 260 -289 303 174 35 0 chrX 104629 104715 -176869425 + GA-rich Low_complexity Low_complexity 1 89 0 2189 153 70 48 chrX 104744 105203 -176868937 - MLT1D LTR MaLR 0 505 37 451 66 16 0 chrX 105197 105258 -176868882 - THE1C LTR MaLR -313 62 1 * 590 195 0 159 chrX 105460 105529 -176868611 + MLT1D LTR MaLR 8 86 -419 1783 218 49 13 chrX 105529 105979 -176868161 - MLT1C LTR MaLR 0 467 2 590 195 0 159 chrX 105979 106001 -176868139 + MLT1D LTR MaLR 86 110 -395 1457 103 45 232 chrX 106001 106449 -176867691 - THE1B LTR MaLR 0 364 1 590 195 0 159 chrX 106449 106551 -176867589 + MLT1D LTR MaLR 110 171 -334 1634 175 3 13 chrX 106586 106900 -176867240 - AluJo SINE Alu -1 311 1 823 173 8 0 chrX 106900 107033 -176867107 - AluJo SINE Alu -177 135 2 913 158 0 49 chrX 107052 107235 -176866905 - L1MA4 LINE L1 -7 6293 6119 2138 114 16 0 chrX 107235 107541 -176866599 + AluSx SINE Alu 1 311 -1 913 158 0 49 chrX 107541 107560 -176866580 - L1MA4 LINE L1 -181 6119 6101 2033 115 20 3 chrX 107574 107879 -176866261 + AluSx SINE Alu 1 310 -2 189 0 0 0 chrX 108003 108024 -176866116 + (A)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chrX 108166 108193 -176865947 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chrX 108360 108384 -176865756 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1484 157 8 0 chrX 108386 108641 -176865499 - AluJo SINE Alu -30 282 26 891 232 46 46 chrX 108797 109077 -176865063 + PABL_A LTR ERV1 381 660 0 1572 201 84 43 chrX 109152 109594 -176864546 - MER31A LTR ERV1 -25 460 1 1730 158 44 0 chrX 110299 110596 -176863544 + AluJb SINE Alu 1 310 -2 481 239 82 0 chrX 110667 110801 -176863339 + L1M4 LINE L1 4971 5115 -1031 219 36 0 0 chrX 110806 110834 -176863306 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1953 90 25 7 chrX 110857 111158 -176862982 + AluSc SINE Alu 1 306 0 2189 104 0 13 chrX 111159 111467 -176862673 - AluSq SINE Alu -9 304 1 324 206 100 123 chrX 111467 111637 -176862503 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 111645 111760 -176862380 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 111810 112106 -176862034 - AluSx SINE Alu -14 298 12 1873 161 3 0 chrX 112129 112440 -176861700 - AluJb SINE Alu 0 312 1 285 317 0 0 chrX 112642 112724 -176861416 - MIR SINE MIR -11 251 170 365 219 47 60 chrX 113208 113372 -176860768 + MER34 LTR ERV1 5 191 -351 2630 108 0 5 chrX 113396 113768 -176860372 - L1PB1 LINE L1 0 6151 5782 265 263 0 0 chrX 113769 113849 -176860291 + L1MC4 LINE L1 6624 6703 -1339 * 299 89 0 0 chrX 113838 113883 -176860257 + L1P5 LINE L1 5782 5826 -325 324 356 0 0 chrX 113886 113976 -176860164 - L1MC4 LINE L1 -1339 6703 6614 1312 102 2 33 chrX 113991 114203 -176859937 - L1P5 LINE L1 -360 5791 5586 1291 196 38 38 chrX 114225 114339 -176859801 + MER57B LTR ERV1 1 114 -320 1725 140 238 14 chrX 114339 114688 -176859452 - MSTA LTR MaLR -1 427 1 1291 196 38 38 chrX 114688 114864 -176859276 + MER57B LTR ERV1 113 291 -143 379 165 89 0 chrX 114871 114950 -176859190 + LTR26B LTR ERV1 446 531 0 662 218 28 0 chrX 114972 115114 -176859026 + MLT1A1 LTR MaLR 220 365 0 1872 111 17 34 chrX 115236 115578 -176858562 - AluSx SINE Alu 0 337 1 651 175 56 81 chrX 115578 115738 -176858402 - MLT1A1 LTR MaLR -209 156 1 4234 115 6 9 chrX 116148 116737 -176857403 + MER41B LTR ERV1 1 589 -46 4133 58 24 7 chrX 116737 117286 -176856854 + LTR6B LTR ERV1 1 558 0 4234 115 6 9 chrX 117286 117333 -176856807 + MER41B LTR ERV1 589 635 0 533 85 24 12 chrX 117650 117732 -176856408 - MER4E LTR ERV1 0 766 684 3493 126 35 6 chrX 117732 118270 -176855870 + MER41A LTR ERV1 1 554 0 1647 214 76 31 chrX 118315 118760 -176855380 + MER50 LTR ERV1 251 715 -19 545 121 12 0 chrX 118788 118871 -176855269 + L1MB2 LINE L1 6023 6106 -65 841 147 0 15 chrX 118897 119033 -176855107 - AluJb SINE Alu -177 135 2 333 149 15 0 chrX 119033 119100 -176855040 + L1MB2 LINE L1 6100 6167 -4 2050 136 3 0 chrX 119372 119682 -176854458 - AluSx SINE Alu -1 311 1 293 89 0 0 chrX 119914 119959 -176854181 - Alu SINE Alu -7 295 251 720 162 0 0 chrX 120012 120123 -176854017 - AluSg/x SINE Alu -7 305 195 1578 170 3 17 chrX 120173 120467 -176853673 + AluJb SINE Alu 1 290 -22 367 260 10 0 chrX 120532 120628 -176853512 - MIR SINE MIR -42 220 124 466 204 21 126 chrX 120749 120853 -176853287 + L1MC4 LINE L1 6822 6899 -1143 2279 90 0 0 chrX 120853 121154 -176852986 + AluSx SINE Alu 1 301 -11 466 204 21 126 chrX 121154 121240 -176852900 + L1MC4 LINE L1 6899 6992 -1050 944 147 0 35 chrX 121240 121410 -176852730 + FRAM SINE Alu 1 163 -13 238 353 45 8 chrX 121513 121646 -176852494 + L1MC4 LINE L1 7092 7229 -813 1638 163 6 38 chrX 121843 122163 -176851977 + AluJo SINE Alu 1 310 -2 2149 124 7 0 chrX 122192 122499 -176851641 - AluSx SINE Alu -3 309 1 22 0 0 0 chrX 122507 122529 -176851611 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 122853 122882 -176851258 + AT_rich Low_complexity Low_complexity 1 29 0 327 230 0 0 chrX 122882 122956 -176851184 - L1PA16 LINE L1 -9 6157 6084 1164 147 0 11 chrX 122985 123162 -176850978 - MER4A LTR ERV1 0 664 490 825 114 8 0 chrX 123517 123649 -176850491 - L1MA5A LINE L1 -226 6071 5939 1183 149 4 54 chrX 123669 123687 -176850453 + L1MA5A LINE L1 6065 6082 -215 3582 127 15 2 chrX 123687 124207 -176849933 + MER1A DNA MER1_type 1 527 0 1183 149 4 54 chrX 124207 124429 -176849711 + L1MA5A LINE L1 6082 6293 -4 1824 151 0 7 chrX 124530 124834 -176849306 - AluSx SINE Alu -10 302 1 1665 160 17 0 chrX 126879 127167 -176846973 - AluJo SINE Alu -18 294 2 294 175 0 0 chrX 127320 127377 -176846763 - MER4-int LTR ERV1 -5430 1168 1112 243 0 0 0 chrX 127602 127629 -176846511 + (CA)n Simple_repeat Simple_repeat 2 28 0 525 132 40 20 chrX 127753 127905 -176846235 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 538 154 22 33 chrX 127936 128118 -176846022 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 297 136 36 27 chrX 128183 128229 -176845911 + (TAGA)n Simple_repeat Simple_repeat 3 47 -66 2170 90 17 0 chrX 128229 128528 -176845612 + AluSx SINE Alu 1 304 -8 297 136 36 27 chrX 128528 128591 -176845549 + (TAGA)n Simple_repeat Simple_repeat 47 113 0 21 0 0 0 chrX 128697 128718 -176845422 + AT_rich Low_complexity Low_complexity 1 21 0 1345 161 93 43 chrX 129224 129526 -176844614 + AluJo SINE Alu 1 312 0 849 119 0 0 chrX 130711 130829 -176843311 + FLAM_C SINE Alu 1 118 -25 1985 34 0 4 chrX 130836 131070 -176843070 - AluY SINE Alu -21 290 58 1938 117 0 0 chrX 131179 131452 -176842688 - AluSq SINE Alu -40 273 1 324 206 100 123 chrX 131452 131622 -176842518 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 131630 131745 -176842395 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 131795 132091 -176842049 - AluSx SINE Alu -14 298 12 1261 248 3 0 chrX 132110 132421 -176841719 - AluJb SINE Alu 0 312 1 22 0 0 0 chrX 132902 132924 -176841216 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chrX 133067 133094 -176841046 + (A)n Simple_repeat Simple_repeat 1 27 0 546 227 161 39 chrX 133603 133707 -176840433 + MLT1J2 LTR MaLR 126 216 -234 653 248 25 20 chrX 133707 133909 -176840231 - MER105 DNA DNA -1 203 1 546 227 161 39 chrX 133909 134075 -176840065 + MLT1J2 LTR MaLR 216 450 0 296 338 46 70 chrX 134470 134754 -176839386 - L2 LINE L2 -55 3258 2982 1792 135 40 20 chrX 135015 135318 -176838822 - AluSx SINE Alu -3 309 1 1091 196 12 80 chrX 135338 135760 -176838380 + L1MA9 LINE L1 5946 6324 -10 25 31 0 0 chrX 135765 135797 -176838343 + AT_rich Low_complexity Low_complexity 1 32 0 228 306 105 24 chrX 135989 136113 -176838027 - MIR SINE MIR -74 188 55 2052 102 0 3 chrX 137391 137721 -176836419 - AluSx SINE Alu 0 329 1 550 293 99 92 chrX 138182 138625 -176835515 + L1MEc LINE L1 786 1156 -5049 1967 106 0 3 chrX 138625 138938 -176835202 + AluSx SINE Alu 1 312 0 550 293 99 92 chrX 138938 139047 -176835093 + L1MEc LINE L1 1156 1263 -4942 1771 147 16 3 chrX 139186 139492 -176834648 + AluJb SINE Alu 1 310 -2 1915 172 21 3 chrX 139733 140059 -176834081 + MER2 DNA MER2_type 7 338 -7 1276 99 0 6 chrX 140276 140458 -176833682 - L1PA8 LINE L1 0 6172 5992 880 64 0 0 chrX 140650 140760 -176833380 - AluSx SINE Alu -9 301 192 978 128 0 0 chrX 140761 140902 -176833238 - AluSx SINE Alu -171 141 1 2128 118 0 3 chrX 141009 141315 -176832825 - AluSx SINE Alu -7 305 1 502 146 12 0 chrX 141315 141397 -176832743 + Tigger5 DNA MER2_type 2241 2323 0 4978 136 13 19 chrX 142302 142632 -176831508 - L1MA5A LINE L1 0 6297 5967 1746 152 3 3 chrX 142632 142915 -176831225 - AluJb SINE Alu -29 283 1 4978 136 13 19 chrX 142915 143442 -176830698 - L1MA5A LINE L1 -330 5967 5445 2032 126 13 10 chrX 144069 144379 -176829761 + AluSx SINE Alu 1 311 -1 453 134 62 52 chrX 144561 144658 -176829482 + MER4A LTR ERV1 1 98 -566 1686 103 22 43 chrX 144658 144977 -176829163 + MER4A LTR ERV1 263 633 -31 1821 199 40 49 chrX 146043 146524 -176827616 - MLT1D LTR MaLR -1 488 27 2244 121 0 0 chrX 147408 147713 -176826427 + AluSx SINE Alu 1 305 -7 180 0 0 0 chrX 147774 147794 -176826346 + (A)n Simple_repeat Simple_repeat 1 20 0 349 209 85 69 chrX 149590 149806 -176824334 - MER106B DNA MER1_type -10 1049 3 965 252 103 50 chrX 149892 149951 -176824189 - Charlie1b DNA MER1_type -2259 502 448 1804 150 7 16 chrX 149951 150258 -176823882 - AluJb SINE Alu -8 304 1 965 252 103 50 chrX 150258 150675 -176823465 - Charlie1b DNA MER1_type -2313 448 1 391 307 0 0 chrX 150728 150881 -176823259 + (TA)n Simple_repeat Simple_repeat 2 154 0 259 141 16 62 chrX 150897 151025 -176823115 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 203 146 0 42 chrX 151055 151103 -176823037 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 344 145 5 72 chrX 151129 151322 -176822818 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 568 145 11 43 chrX 151352 151538 -176822602 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 702 11 32 0 chrX 151623 151718 -176822422 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 524 191 0 71 chrX 152455 152499 -176821641 + MER58A DNA MER1_type 45 91 -250 1512 135 9 120 chrX 152499 152832 -176821308 - AluJo SINE Alu -16 296 1 524 191 0 71 chrX 152832 152850 -176821290 + MER58A DNA MER1_type 91 109 -232 1899 205 6 0 chrX 152850 153196 -176820944 + MER7A DNA MER2_type 1 346 0 524 191 0 71 chrX 153196 153258 -176820882 + MER58A DNA MER1_type 109 161 -63 2019 140 7 0 chrX 153501 153786 -176820354 - AluSx SINE Alu -25 287 1 1274 148 14 0 chrX 154002 154212 -176819928 + AluSg/x SINE Alu 86 298 -14 2183 93 14 0 chrX 154931 155247 -176818893 + AluSx SINE Alu 1 320 0 1260 115 0 0 chrX 155253 155427 -176818713 + AluSg/x SINE Alu 131 304 -8 1848 234 84 40 chrX 155982 156171 -176817969 + L1MC4a LINE L1 6787 6966 -842 1994 146 0 7 chrX 156171 156465 -176817675 - AluJo SINE Alu -20 292 1 1848 234 84 40 chrX 156465 156894 -176817246 + L1MC4a LINE L1 6966 7439 -369 2083 110 7 0 chrX 156894 157196 -176816944 + AluSx SINE Alu 1 304 0 1848 234 84 40 chrX 157196 157233 -176816907 + L1MC4a LINE L1 7439 7473 -335 2813 74 94 5 chrX 157507 157912 -176816228 - LTR7 LTR ERV1 -9 441 1 1846 161 3 11 chrX 158281 158605 -176815535 - AluJo SINE Alu 0 322 1 229 314 93 21 chrX 158613 158807 -176815333 - HAL1 LINE L1 -767 1740 1533 245 284 176 12 chrX 158827 159077 -176815063 - HAL1 LINE L1 -1059 1448 1158 253 299 69 0 chrX 159248 159335 -176814805 - L1ME LINE L1 -401 5720 5628 717 106 10 0 chrX 159654 159758 -176814382 - L1MA2 LINE L1 -56 6248 6144 2281 79 23 13 chrX 159878 160181 -176813959 - AluSx SINE Alu -6 306 1 552 255 60 0 chrX 160462 160611 -176813529 + MER20 DNA MER1_type 48 205 -14 423 0 0 0 chrX 160687 160734 -176813406 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1967 105 3 57 chrX 160735 161031 -176813109 - AluSx SINE Alu -32 280 1 1593 159 4 15 chrX 161668 161938 -176812202 - AluJo SINE Alu -5 307 41 30 0 0 0 chrX 162031 162061 -176812079 + AT_rich Low_complexity Low_complexity 1 30 0 2237 113 0 25 chrX 162063 162382 -176811758 + AluSx SINE Alu 1 311 -1 318 203 0 0 chrX 162385 162449 -176811691 + L1MC4 LINE L1 6640 6703 -1339 23 0 0 0 chrX 162450 162473 -176811667 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrX 162495 162530 -176811610 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 162548 162570 -176811570 + AT_rich Low_complexity Low_complexity 1 22 0 507 218 11 22 chrX 162607 162786 -176811354 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 234 197 53 53 chrX 162805 162881 -176811259 + L1MC3 LINE L1 6571 6646 -1139 652 221 2 10 chrX 162881 163473 -176810667 + (CATATA)n Simple_repeat Simple_repeat 1 587 0 214 270 0 58 chrX 163522 163696 -176810444 + (CATATA)n Simple_repeat Simple_repeat 2 165 0 243 231 103 0 chrX 163699 163777 -176810363 - L1MC4 LINE L1 -1344 6698 6613 1744 170 0 38 chrX 164280 164598 -176809542 + AluJb SINE Alu 1 306 -6 2070 128 10 3 chrX 165109 165405 -176808735 + AluJb SINE Alu 1 298 -14 1760 174 16 10 chrX 165729 166039 -176808101 + AluJo SINE Alu 1 312 0 630 168 23 12 chrX 166753 166926 -176807214 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 600 134 53 12 chrX 166959 167130 -176807010 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 682 116 35 17 chrX 167144 167316 -176806824 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 448 86 86 19 chrX 167371 167533 -176806607 + (TCTA)n Simple_repeat Simple_repeat 4 176 0 181 158 53 0 chrX 167563 167620 -176806520 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 1320 161 87 0 chrX 168162 168416 -176805724 - L1MB5 LINE L1 -6 6168 5893 1510 178 68 0 chrX 168455 168748 -176805392 - L1MB5 LINE L1 -14 6160 5848 837 251 55 42 chrX 169334 169737 -176804403 + HAL1 LINE L1 970 1377 -1130 348 83 0 0 chrX 169754 169802 -176804338 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 302 260 123 62 chrX 169854 170146 -176803994 + HAL1 LINE L1 1404 1713 -794 23 0 0 0 chrX 170168 170191 -176803949 + AT_rich Low_complexity Low_complexity 1 23 0 901 179 7 0 chrX 170191 170336 -176803804 + FRAM SINE Alu 12 157 -19 393 22 0 0 chrX 170337 170383 -176803757 + (TG)n Simple_repeat Simple_repeat 2 47 0 1601 179 23 0 chrX 171250 171513 -176802627 - AluJo SINE Alu -25 287 19 1792 111 16 46 chrX 171528 171834 -176802306 - AluJo SINE Alu -10 302 6 905 173 113 90 chrX 172401 172756 -176801384 - MLT1C LTR MaLR 0 390 61 3924 107 42 23 chrX 172756 173355 -176800785 + MER4B LTR ERV1 1 610 0 905 173 113 90 chrX 173355 173413 -176800727 - MLT1C LTR MaLR -329 61 6 1980 177 8 20 chrX 174789 175184 -176798956 + MLT1B LTR MaLR 1 390 0 1588 128 76 49 chrX 175210 175387 -176798753 + MLT1B LTR MaLR 1 191 -199 2230 110 0 0 chrX 175387 175679 -176798461 + AluSp SINE Alu 1 292 -21 1588 128 76 49 chrX 175679 175789 -176798351 + MLT1B LTR MaLR 191 296 -94 487 265 19 31 chrX 176029 176191 -176797949 + Charlie1 DNA MER1_type 2163 2322 -439 259 246 33 16 chrX 176599 176660 -176797480 - HERVL74 LTR ERVL -4776 909 848 924 130 0 0 chrX 176856 176979 -176797161 + FLAM_C SINE Alu 1 123 -20 23 54 0 0 chrX 176979 177016 -176797124 + AT_rich Low_complexity Low_complexity 1 37 0 1945 141 7 7 chrX 177277 177583 -176796557 - AluJo SINE Alu -6 306 1 26 0 0 0 chrX 178644 178670 -176795470 + GC_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chrX 178799 178836 -176795304 + GC_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chrX 178943 178977 -176795163 + GC_rich Low_complexity Low_complexity 1 34 0 189 154 0 0 chrX 179192 179231 -176794909 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 222 236 0 18 chrX 179274 179329 -176794811 + (CATG)n Simple_repeat Simple_repeat 1 54 0 358 270 3 17 chrX 179376 179739 -176794401 + (TGAA)n Simple_repeat Simple_repeat 1 357 0 198 289 0 0 chrX 179758 179907 -176794233 + (TGAA)n Simple_repeat Simple_repeat 4 152 0 195 162 0 0 chrX 179967 180004 -176794136 + (TGAG)n Simple_repeat Simple_repeat 1 37 0 321 304 19 6 chrX 180011 180172 -176793968 + (TGAA)n Simple_repeat Simple_repeat 1 163 0 403 186 0 16 chrX 180254 180383 -176793757 + (TGAA)n Simple_repeat Simple_repeat 4 130 0 427 216 28 33 chrX 180406 180664 -176793476 + (TGAG)n Simple_repeat Simple_repeat 1 256 0 3513 171 2 0 chrX 181125 181715 -176792425 - L1PB4 LINE L1 -3 6153 5563 593 264 46 42 chrX 182214 182430 -176791710 - MER20 DNA MER1_type -2 217 1 565 131 51 17 chrX 182432 182652 -176791488 + (TAGA)n Simple_repeat Simple_repeat 1 262 -15 246 32 0 0 chrX 182652 182683 -176791457 + (ATG)n Simple_repeat Simple_repeat 2 32 0 565 131 51 17 chrX 182683 182700 -176791440 + (TAGA)n Simple_repeat Simple_repeat 262 277 0 354 163 20 82 chrX 183327 183425 -176790715 - L2 LINE L2 0 3313 3222 795 251 94 59 chrX 183429 183736 -176790404 - L2 LINE L2 -49 3264 2947 1821 281 33 12 chrX 183745 184385 -176789755 - L2 LINE L2 -509 2805 2153 8799 51 15 3 chrX 184513 185648 -176788492 + L1PA13 LINE L1 3682 4830 -1316 5601 113 1 4 chrX 185749 186560 -176787580 + L1PA13 LINE L1 5355 6163 0 1696 81 5 14 chrX 186560 186781 -176787359 + AluY SINE Alu 1 219 -92 3726 148 48 17 chrX 186883 187307 -176786833 + L1M1 LINE L1 2977 3386 -4179 297 0 0 0 chrX 187307 187340 -176786800 + (CA)n Simple_repeat Simple_repeat 2 34 0 3726 148 48 17 chrX 187340 187899 -176786241 + L1M1 LINE L1 3386 3994 -3571 433 155 24 60 chrX 188054 188138 -176786002 + MLT1D LTR MaLR 5 85 -420 708 167 35 7 chrX 188145 188289 -176785851 + MER96B DNA MER1_type? 265 412 -5 305 368 35 7 chrX 188314 188458 -176785682 + L2 LINE L2 3107 3254 -18 207 241 46 0 chrX 188599 188686 -176785454 + (TATG)n Simple_repeat Simple_repeat 2 92 0 431 123 41 0 chrX 190169 190242 -176783898 - L1MA3 LINE L1 -5 6300 6225 604 298 44 5 chrX 191039 191244 -176782896 + MIR SINE MIR 47 259 -3 312 205 137 87 chrX 191346 191507 -176782633 + L2 LINE L2 2622 2790 -524 8004 61 8 0 chrX 192922 193970 -176780170 + L1P LINE L1 1400 2455 -3691 292 251 128 21 chrX 194082 194277 -176779863 - MLT1C LTR MaLR -147 358 127 1235 196 27 4 chrX 194277 194537 -176779603 - L1MB5 LINE L1 -100 6074 5809 667 297 114 0 chrX 195709 195928 -176778212 - MIR SINE MIR 0 262 19 212 152 15 106 chrX 195934 196000 -176778140 + MIR SINE MIR 101 160 -102 2061 132 3 0 chrX 196280 196590 -176777550 + AluSx SINE Alu 1 311 -1 817 125 8 0 chrX 196592 196720 -176777420 + L1PB2 LINE L1 6023 6151 0 1060 204 103 43 chrX 197031 197093 -176777047 - MLT1C LTR MaLR -6 461 404 2019 125 3 0 chrX 197093 197389 -176776751 + AluSx SINE Alu 4 300 -12 1060 204 103 43 chrX 197389 197655 -176776485 - MLT1C LTR MaLR -63 404 113 1093 171 11 0 chrX 197663 197850 -176776290 + MLT1B LTR MaLR 1 189 -201 700 212 71 119 chrX 197863 198075 -176776065 - MLT1C LTR MaLR -143 324 134 2021 114 0 0 chrX 198075 198364 -176775776 - AluSx SINE Alu -23 289 1 700 212 71 119 chrX 198364 198492 -176775648 - MLT1C LTR MaLR -333 134 1 767 248 109 8 chrX 198502 198807 -176775333 - MLT1C LTR MaLR -122 345 1 262 310 43 17 chrX 198825 198941 -176775199 - LTR33 LTR ERVL -370 151 33 2289 94 0 0 chrX 199016 199315 -176774825 + AluSg SINE Alu 1 299 -11 2242 95 10 0 chrX 200004 200310 -176773830 + AluSx SINE Alu 1 309 -3 670 166 19 39 chrX 200962 201478 -176772662 + (TAGA)n Simple_repeat Simple_repeat 1 800 -25 1649 196 0 0 chrX 201478 201779 -176772361 + AluJo SINE Alu 1 301 -11 670 166 19 39 chrX 201779 201805 -176772335 + (TAGA)n Simple_repeat Simple_repeat 800 825 0 334 247 26 0 chrX 201920 201997 -176772143 - MER20 DNA MER1_type 0 219 141 717 243 17 6 chrX 202023 202196 -176771944 + MLT1B LTR MaLR 293 467 0 2172 93 3 3 chrX 202251 202552 -176771588 - AluSq SINE Alu -12 301 1 649 193 96 0 chrX 202553 202688 -176771452 - MLT1A1 LTR MaLR -208 157 10 1787 157 10 3 chrX 202729 203028 -176771112 - MLT1A1 LTR MaLR -64 301 1 2273 89 0 0 chrX 203307 203609 -176770531 + AluY SINE Alu 1 302 -9 2023 123 3 3 chrX 203802 204104 -176770036 + AluSx SINE Alu 1 302 -10 485 234 0 19 chrX 204591 204698 -176769442 + MER5A DNA MER1_type 1 105 -84 2203 249 38 23 chrX 204778 205304 -176768836 - MER87 LTR ERV1 -7 534 1 233 69 0 0 chrX 205538 205567 -176768573 + (GA)n Simple_repeat Simple_repeat 1 29 0 580 161 27 13 chrX 205567 205716 -176768424 + GA-rich Low_complexity Low_complexity 4 154 0 2108 100 3 7 chrX 206300 206600 -176767540 + AluSx SINE Alu 6 304 -8 1195 168 21 66 chrX 206770 206901 -176767239 - L1MA8 LINE L1 0 6291 6156 2015 122 0 0 chrX 206901 207196 -176766944 - AluY SINE Alu -16 295 1 1195 168 21 66 chrX 207196 207350 -176766790 - L1MA8 LINE L1 -135 6156 6019 2025 227 92 50 chrX 207361 207506 -176766634 - MER50 LTR ERV1 -7 727 589 2179 106 0 3 chrX 207506 207808 -176766332 - AluSg SINE Alu -9 301 1 2025 227 92 50 chrX 207808 208234 -176765906 - MER50 LTR ERV1 -145 589 119 1743 100 104 11 chrX 208234 208503 -176765637 - AluSg1 SINE Alu -15 294 1 2025 227 92 50 chrX 208503 208627 -176765513 - MER50 LTR ERV1 -615 119 2 1031 165 11 21 chrX 208627 208815 -176765325 - L1MA8 LINE L1 -276 6015 5830 633 110 0 0 chrX 208819 208910 -176765230 - AluSg/x SINE Alu -6 303 213 632 105 62 18 chrX 209013 209522 -176764618 + GA-rich Low_complexity Low_complexity 1 531 0 1870 155 153 27 chrX 209629 210041 -176764099 + MER4C LTR ERV1 1 464 -1 21 0 0 0 chrX 210183 210204 -176763936 + GC_rich Low_complexity Low_complexity 1 21 0 407 223 9 0 chrX 210801 210913 -176763227 + (TGGA)n Simple_repeat Simple_repeat 4 116 0 180 368 69 11 chrX 211040 211127 -176763013 - MIR3 SINE MIR -114 94 3 412 250 0 17 chrX 211396 211512 -176762628 + AluSp SINE Alu 2 115 -198 344 186 0 0 chrX 211512 211571 -176762569 + MLT1C LTR MaLR 357 415 -52 1664 161 4 0 chrX 211582 211861 -176762279 - AluSx SINE Alu -29 283 4 817 125 8 0 chrX 212235 212363 -176761777 - L1PB2 LINE L1 0 6151 6023 2029 134 0 6 chrX 212365 212678 -176761462 - AluSx SINE Alu -1 311 1 514 208 102 19 chrX 213211 213380 -176760760 - MER39 LTR ERV1 -1 687 471 705 133 0 9 chrX 213380 213507 -176760633 - AluSx SINE Alu 0 309 189 685 89 11 0 chrX 213504 213594 -176760546 - AluSx SINE Alu -205 107 17 * 842 197 40 100 chrX 213594 213654 -176760486 - MER39 LTR ERV1 -178 529 467 4376 69 9 0 chrX 213654 214202 -176759938 - MER41A LTR ERV1 -1 553 1 842 197 40 100 chrX 214202 214440 -176759700 - MER39 LTR ERV1 -240 467 249 242 196 20 0 chrX 214453 214504 -176759636 - MER39 LTR ERV1 -655 52 1 1149 107 24 0 chrX 214863 215031 -176759109 + AluSg/x SINE Alu 136 307 -5 2036 110 3 0 chrX 215455 215746 -176758394 - AluSx SINE Alu -18 294 3 290 315 153 20 chrX 215990 216193 -176757947 + MARNA DNA Mariner 104 333 -253 2242 107 3 0 chrX 217212 217522 -176756618 - AluSx SINE Alu -1 311 1 254 136 0 0 chrX 217774 217818 -176756322 - Alu SINE Alu -2 299 256 756 233 3 6 chrX 217918 218277 -176755863 + (TCCA)n Simple_repeat Simple_repeat 1 358 0 368 292 21 108 chrX 218470 218606 -176755534 - MLT1J LTR MaLR -64 447 338 2185 78 0 0 chrX 218606 218924 -176755216 + AluSg SINE Alu 1 318 0 368 292 21 108 chrX 218924 219026 -176755114 - MLT1J LTR MaLR -173 338 229 180 111 0 0 chrX 219026 219053 -176755087 + (A)n Simple_repeat Simple_repeat 1 27 0 1602 170 7 3 chrX 220067 220361 -176753779 - AluJb SINE Alu -17 295 1 262 324 101 26 chrX 221558 221904 -176752236 + L1ME LINE L1 5490 5861 -260 619 273 17 0 chrX 222683 222855 -176751285 - MER45A DNA AcHobo -3 175 1 1969 126 7 0 chrX 223654 223955 -176750185 - AluSp SINE Alu -10 303 1 2047 202 8 0 chrX 224084 224475 -176749665 + L1MB5 LINE L1 5745 6138 -36 2403 76 0 0 chrX 224479 224783 -176749357 + AluSg SINE Alu 1 304 -6 1394 182 14 17 chrX 224793 225089 -176749051 + AluJo SINE Alu 1 295 -17 218 237 31 31 chrX 226062 226159 -176747981 + GA-rich Low_complexity Low_complexity 2 98 0 832 145 0 22 chrX 226408 226546 -176747594 + AluJo SINE Alu 1 135 -177 327 161 0 0 chrX 227540 227596 -176746544 + L1MA7 LINE L1 6233 6288 -3 1933 104 0 0 chrX 227605 227873 -176746267 + AluSg SINE Alu 39 306 -4 897 254 40 40 chrX 228057 228356 -176745784 + Charlie4a DNA MER1_type 12 310 -198 214 245 0 47 chrX 229499 229605 -176744535 + C-rich Low_complexity Low_complexity 4 104 0 1953 112 0 3 chrX 229705 229991 -176744149 + AluSx SINE Alu 14 298 -14 181 0 33 33 chrX 229993 230023 -176744117 + (TATAA)n Simple_repeat Simple_repeat 4 33 0 2278 75 0 7 chrX 230512 230818 -176743322 + AluY SINE Alu 1 304 -7 1478 198 0 24 chrX 231017 231310 -176742830 - AluJb SINE Alu -19 293 8 237 232 0 0 chrX 231359 231428 -176742712 + GA-rich Low_complexity Low_complexity 2 70 0 309 236 28 28 chrX 231504 231610 -176742530 - MLT1J2 LTR MaLR 0 450 345 1240 202 12 62 chrX 232021 232069 -176742071 + L1MB8 LINE L1 5569 5618 -560 2123 114 91 26 chrX 232069 232411 -176741729 - THE1B LTR MaLR 0 364 1 1240 202 12 62 chrX 232411 232682 -176741458 + L1MB8 LINE L1 5618 5873 -305 1689 163 0 43 chrX 232682 233008 -176741132 + AluSx SINE Alu 1 312 0 1240 202 12 62 chrX 233008 233023 -176741117 + L1MB8 LINE L1 5873 5887 -291 274 109 43 0 chrX 233067 233113 -176741027 - MER34C LTR ERV1 -533 52 5 * 354 123 46 0 chrX 233081 233146 -176740994 - MER34C LTR ERV1 -512 73 6 382 275 50 102 chrX 234087 234387 -176739753 - LTR16C LTR ERVL -14 477 153 2392 156 51 10 chrX 234387 234798 -176739342 - MSTA LTR MaLR 0 428 1 382 275 50 102 chrX 234798 234903 -176739237 - LTR16C LTR ERVL -338 153 44 3741 121 23 62 chrX 235200 235313 -176738827 - MER41B LTR ERV1 0 635 519 1689 199 0 0 chrX 235313 235619 -176738521 + AluJo SINE Alu 1 306 -6 3741 121 23 62 chrX 235619 236166 -176737974 - MER41B LTR ERV1 -116 519 1 2268 97 0 3 chrX 236179 236487 -176737653 + AluSq SINE Alu 1 307 -6 1475 231 89 11 chrX 236530 236911 -176737229 + MER87 LTR ERV1 1 411 -130 216 0 0 0 chrX 237053 237077 -176737063 + (TTC)n Simple_repeat Simple_repeat 1 24 0 2186 92 16 0 chrX 237082 237387 -176736753 - AluSg SINE Alu 0 310 1 792 234 5 3 chrX 238313 238685 -176735455 + (TCCA)n Simple_repeat Simple_repeat 1 373 0 724 181 6 6 chrX 238702 238879 -176735261 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 344 316 124 28 chrX 239629 239847 -176734293 + MIR SINE MIR 10 248 -14 2059 121 0 3 chrX 240142 240440 -176733700 + AluSg1 SINE Alu 1 297 -12 746 176 12 44 chrX 240599 240826 -176733314 - L1M4c LINE L1 -4768 1616 1356 1924 185 83 46 chrX 241181 241661 -176732479 + MLT1D LTR MaLR 2 499 -6 2295 97 0 13 chrX 242510 242818 -176731322 - AluY SINE Alu -7 304 1 1412 97 0 20 chrX 243479 243652 -176730488 - AluSg/x SINE Alu -6 304 134 2245 107 7 0 chrX 243652 243942 -176730198 - AluSx SINE Alu -20 292 1 1412 97 0 20 chrX 243942 243964 -176730176 - AluSg/x SINE Alu -176 134 113 1500 260 48 9 chrX 244193 244632 -176729508 + MLT1D LTR MaLR 1 456 -49 847 181 0 0 chrX 244784 244917 -176729223 - FLAM_C SINE Alu 0 133 1 1928 176 3 0 chrX 244923 245229 -176728911 - AluSx SINE Alu -5 307 1 1735 120 0 4 chrX 245843 246076 -176728064 + AluSg SINE Alu 4 235 -75 1234 123 24 0 chrX 246176 246366 -176727774 + AluSg/x SINE Alu 108 301 0 2358 94 3 0 chrX 247096 247394 -176726746 + AluSp SINE Alu 1 299 -14 307 286 0 0 chrX 247577 247654 -176726486 + (TG)n Simple_repeat Simple_repeat 2 78 0 558 205 3 30 chrX 247659 247994 -176726146 + (TATG)n Simple_repeat Simple_repeat 1 325 0 208 234 0 37 chrX 248018 248125 -176726015 + (TATG)n Simple_repeat Simple_repeat 2 104 0 1589 160 79 18 chrX 248519 248833 -176725307 + MER65A LTR ERV1 82 420 -25 2046 142 80 17 chrX 248833 249235 -176724905 - MSTA LTR MaLR 0 428 2 1589 160 79 18 chrX 249235 249263 -176724877 + MER65A LTR ERV1 420 445 0 319 230 12 21 chrX 250032 250374 -176723766 + (TCTA)n Simple_repeat Simple_repeat 1 338 0 367 170 22 39 chrX 250403 250585 -176723555 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2382 102 0 0 chrX 250886 251189 -176722951 - AluSx SINE Alu -9 303 1 2383 94 3 0 chrX 251199 251497 -176722643 - AluSp SINE Alu -14 299 1 1264 118 0 0 chrX 252354 252524 -176721616 - AluSg/x SINE Alu -9 303 134 2260 111 0 3 chrX 252524 252830 -176721310 - AluSx SINE Alu -7 305 1 3088 169 9 0 chrX 252947 253487 -176720653 + L1PA16 LINE L1 5584 6128 -38 332 212 0 30 chrX 253626 253692 -176720448 + L1MC4 LINE L1 6641 6704 -1338 356 297 0 22 chrX 253745 253836 -176720304 - L1MC4 LINE L1 -1339 6703 6615 258 300 0 0 chrX 253838 253908 -176720232 + (TA)n Simple_repeat Simple_repeat 1 70 0 345 212 166 67 chrX 254002 254195 -176719945 - L2 LINE L2 -5 3308 3097 1615 213 9 42 chrX 254234 254661 -176719479 + L1M4 LINE L1 5377 5789 -389 25 0 0 0 chrX 254775 254800 -176719340 + GC_rich Low_complexity Low_complexity 1 25 0 2534 60 3 3 chrX 255253 255555 -176718585 + AluSp SINE Alu 1 302 -11 1686 178 3 30 chrX 255559 255862 -176718278 + AluJb SINE Alu 2 296 -16 3720 130 42 18 chrX 256482 256933 -176717207 + LTR9 LTR ERV1 1 471 -141 189 0 0 0 chrX 256933 256954 -176717186 + (TC)n Simple_repeat Simple_repeat 2 22 0 3720 130 42 18 chrX 256954 257100 -176717040 + LTR9 LTR ERV1 471 612 0 3873 61 15 81 chrX 257266 257858 -176716282 + MER41A LTR ERV1 2 554 0 2232 109 0 3 chrX 258351 258645 -176715495 + AluSx SINE Alu 16 308 -4 2500 126 37 0 chrX 258645 259027 -176715113 + L1PA11 LINE L1 5779 6174 0 1194 178 50 27 chrX 259042 259300 -176714840 + LTR49 LTR ERV1 98 361 -234 579 177 48 16 chrX 259321 259445 -176714695 - AluJb SINE Alu 0 312 185 22 0 0 0 chrX 259448 259470 -176714670 + AT_rich Low_complexity Low_complexity 1 22 0 1341 368 0 47 chrX 259487 259808 -176714332 + AluSx SINE Alu 5 310 -2 1617 189 20 14 chrX 259870 260166 -176713974 - AluJo SINE Alu -8 304 7 717 226 17 133 chrX 260194 260473 -176713667 - LTR52 LTR ERVL -26 395 164 2423 99 0 0 chrX 260473 260777 -176713363 - AluSx SINE Alu -8 304 1 717 226 17 133 chrX 260777 260851 -176713289 - LTR52 LTR ERVL -257 164 83 685 182 157 6 chrX 260873 261032 -176713108 - MSTA LTR MaLR -245 183 1 1675 188 48 58 chrX 261054 261448 -176712692 - MLT2B2 LTR ERVL -28 487 98 572 145 161 24 chrX 261568 261692 -176712448 - MSTB1 LTR MaLR -313 144 4 1866 185 34 27 chrX 261901 262448 -176711692 - MLT2A2 LTR ERVL 0 554 1 3124 169 4 24 chrX 262500 263038 -176711102 - MER1A DNA MER1_type 0 527 1 509 313 6 6 chrX 263200 263363 -176710777 - MER63A DNA MER1_type -4 206 44 2064 136 0 0 chrX 264091 264427 -176709713 - AluSx SINE Alu 0 336 1 2249 92 3 7 chrX 264433 264738 -176709402 - AluSx SINE Alu -6 306 3 257 315 167 6 chrX 265023 265185 -176708955 + MARNA DNA Mariner 146 333 -253 2230 105 7 0 chrX 266375 266670 -176707470 - AluSx SINE Alu -12 300 4 825 122 32 0 chrX 266684 266807 -176707333 - FLAM_C SINE Alu -2 131 5 2102 141 0 3 chrX 267210 267514 -176706626 + AluSx SINE Alu 1 303 -9 288 0 0 0 chrX 267694 267726 -176706414 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 283 69 69 chrX 267802 267975 -176706165 + MIR SINE MIR 90 262 0 2388 100 0 3 chrX 268219 268530 -176705610 + AluSg SINE Alu 1 310 0 300 248 116 33 chrX 268690 268811 -176705329 + MIR SINE MIR 23 153 -55 56 61 0 0 chrX 271591 271689 -176702451 + GC_rich Low_complexity Low_complexity 1 98 0 342 283 103 68 chrX 271722 272150 -176701990 - L1M2 LINE L1 -5651 1198 756 192 97 0 0 chrX 272389 272420 -176701720 + (TC)n Simple_repeat Simple_repeat 2 32 0 183 220 0 0 chrX 273737 273787 -176700353 + (TG)n Simple_repeat Simple_repeat 1 50 0 3215 91 2 9 chrX 274118 274578 -176699562 - PABL_B LTR ERV1 -210 457 1 2020 112 0 69 chrX 274652 274978 -176699162 - AluSx SINE Alu 0 305 1 1277 168 112 56 chrX 275120 275388 -176698752 + AluJb SINE Alu 1 283 -29 3039 131 50 84 chrX 275678 276086 -176698054 - MER4A LTR ERV1 -4 596 215 2135 119 3 22 chrX 276086 276398 -176697742 - AluSq SINE Alu -4 309 4 3039 131 50 84 chrX 276398 276606 -176697534 - MER4A LTR ERV1 -385 215 1 1852 171 13 30 chrX 276607 276646 -176697494 - L1MA4 LINE L1 -15 6285 6247 261 83 0 0 chrX 276646 276682 -176697458 + (TA)n Simple_repeat Simple_repeat 2 37 0 1357 64 0 6 chrX 276684 276857 -176697283 - L1PA8 LINE L1 -14 6158 5987 1852 171 13 30 chrX 276857 277211 -176696929 - L1MA4 LINE L1 -54 6246 5896 2189 99 0 17 chrX 277348 277640 -176696500 + AluSg SINE Alu 24 310 0 1928 169 10 3 chrX 277716 278023 -176696117 + AluJb SINE Alu 1 309 -3 2438 94 0 3 chrX 278502 278810 -176695330 + AluSq SINE Alu 1 307 -6 1783 131 13 43 chrX 279002 279307 -176694833 - AluSx SINE Alu -16 296 1 1526 125 0 0 chrX 279307 279531 -176694609 + PABL_B LTR ERV1 444 667 0 2775 166 100 27 chrX 279867 280586 -176693554 + LTR1B LTR ERV1 1 754 -31 305 119 40 68 chrX 280633 280703 -176693437 + (TCTA)n Simple_repeat Simple_repeat 3 73 -101 2277 119 0 0 chrX 280703 280998 -176693142 + AluSg SINE Alu 2 296 -14 305 119 40 68 chrX 280998 281104 -176693036 + (TCTA)n Simple_repeat Simple_repeat 73 174 0 307 143 0 57 chrX 281113 281183 -176692957 + MLT2B1 LTR ERVL 455 520 0 2367 103 7 0 chrX 281387 281697 -176692443 + AluSq SINE Alu 1 312 -1 2201 125 3 3 chrX 281988 282299 -176691841 - AluSx SINE Alu -1 311 1 1543 177 7 35 chrX 282420 282541 -176691599 + AluJb SINE Alu 1 124 -188 1988 102 18 32 chrX 282541 282826 -176691314 - AluSx SINE Alu -9 303 23 1543 177 7 35 chrX 282826 282987 -176691153 + AluJb SINE Alu 124 275 -37 363 277 120 54 chrX 283013 283377 -176690763 + L1M4 LINE L1 981 3377 -1206 1635 165 4 0 chrX 283806 284061 -176690079 + AluJo SINE Alu 11 266 -46 1406 132 5 0 chrX 284209 284413 -176689727 - AluSq SINE Alu -108 205 1 443 252 25 69 chrX 284441 284600 -176689540 + MLT1C LTR MaLR 2 153 -314 339 156 0 16 chrX 284603 284667 -176689473 - MLT1A1 LTR MaLR -9 356 294 1007 225 76 31 chrX 284706 285028 -176689112 - MLT1A1 LTR MaLR -18 410 23 5595 54 1 0 chrX 285873 286557 -176687583 + L1PA7 LINE L1 5469 6153 -1 491 316 63 36 chrX 286903 287185 -176686955 - L1ME LINE L1 -4986 1617 1347 2307 119 3 0 chrX 287185 287497 -176686643 - AluSp SINE Alu 0 313 1 491 316 63 36 chrX 287497 287521 -176686619 - L1ME LINE L1 -5256 1347 1325 2526 133 23 14 chrX 287547 287977 -176686163 - MER57B LTR ERV1 0 434 1 2339 100 3 0 chrX 287988 288288 -176685852 + AluSp SINE Alu 5 305 -8 1496 86 4 78 chrX 288404 288636 -176685504 + AluSg/x SINE Alu 82 296 -14 870 132 0 0 chrX 288638 288759 -176685381 - AluJo/FLAM SINE Alu -189 123 3 2353 99 0 0 chrX 288862 289166 -176684974 + AluSg SINE Alu 1 304 -6 838 237 8 42 chrX 289172 289408 -176684732 - L1MC3 LINE L1 -421 7364 7137 198 56 0 56 chrX 289586 289622 -176684518 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 2022 135 4 0 chrX 289622 289903 -176684237 - AluSx SINE Alu -1 318 2 22 56 0 0 chrX 290041 290077 -176684063 + AT_rich Low_complexity Low_complexity 1 36 0 2276 145 0 0 chrX 290249 290560 -176683580 - AluSx SINE Alu 0 312 2 413 301 77 86 chrX 290593 291268 -176682872 + L1ME LINE L1 3 671 -5399 827 172 0 13 chrX 291463 291690 -176682450 + (ATG)n Simple_repeat Simple_repeat 1 224 0 1083 130 0 8 chrX 291709 292074 -176682066 + (ATG)n Simple_repeat Simple_repeat 1 361 0 238 292 10 31 chrX 292808 292904 -176681236 - Charlie4 DNA MER1_type -1764 197 104 1886 164 0 3 chrX 293144 293430 -176680710 - AluSx SINE Alu -25 287 3 2416 87 0 13 chrX 293754 294066 -176680074 - AluSc SINE Alu -1 308 1 2155 94 0 11 chrX 294075 294402 -176679738 - AluSc SINE Alu 0 324 1 2392 107 0 0 chrX 294622 294932 -176679208 + AluSx SINE Alu 1 310 -2 2011 131 37 67 chrX 295712 296034 -176678106 + THE1B LTR MaLR 1 313 -51 2059 124 0 3 chrX 296034 296353 -176677787 + AluSx SINE Alu 1 318 0 2011 131 37 67 chrX 296353 296403 -176677737 + THE1B LTR MaLR 313 363 -1 309 189 33 56 chrX 296440 296530 -176677610 - L1MB3 LINE L1 -5 6178 6091 354 295 108 39 chrX 297064 297451 -176676689 + LTR33 LTR ERVL 89 502 -19 1833 126 52 37 chrX 297559 297908 -176676232 - THE1B LTR MaLR -10 354 1 241 164 343 0 chrX 298183 298256 -176675884 + MER4A LTR ERV1 1 98 -566 1563 141 9 29 chrX 298256 298589 -176675551 + MER4A LTR ERV1 261 645 -19 645 201 113 2 chrX 298610 298829 -176675311 + L1MC3 LINE L1 7535 7993 -2 2218 125 6 3 chrX 298921 299232 -176674908 + AluSx SINE Alu 1 312 0 311 202 0 8 chrX 299966 300087 -176674053 + CT-rich Low_complexity Low_complexity 1 119 0 1688 183 0 14 chrX 300091 300375 -176673765 - AluJo SINE Alu -32 280 1 1974 157 27 76 chrX 300799 301095 -176673045 - MSTA LTR MaLR -4 424 156 2219 115 0 0 chrX 301095 301390 -176672750 + AluSq SINE Alu 1 295 -18 1974 157 27 76 chrX 301390 301539 -176672601 - MSTA LTR MaLR -272 156 1 2283 97 0 10 chrX 301584 301884 -176672256 - AluY SINE Alu -14 297 1 877 173 0 0 chrX 302216 302349 -176671791 + FLAM_C SINE Alu 1 133 0 365 39 0 19 chrX 302373 302425 -176671715 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 309 248 31 23 chrX 302427 302556 -176671584 + (TTTG)n Simple_repeat Simple_repeat 3 132 0 231 215 69 0 chrX 302484 302628 -176671512 + (TG)n Simple_repeat Simple_repeat 2 155 0 * 2181 126 0 3 chrX 303462 303764 -176670376 + AluSx SINE Alu 1 301 -11 1064 243 7 95 chrX 304730 305147 -176668993 - MLT1E2 LTR MaLR -136 490 137 2041 112 0 0 chrX 305147 305449 -176668691 + AluSx SINE Alu 14 315 0 1064 243 7 95 chrX 305449 305572 -176668568 - MLT1E2 LTR MaLR -489 137 5 1017 154 0 0 chrX 305970 306119 -176668021 + AluJb SINE Alu 159 307 -5 249 57 0 0 chrX 306154 306189 -176667951 + (GA)n Simple_repeat Simple_repeat 2 36 0 324 0 0 0 chrX 306189 306225 -176667915 + (TG)n Simple_repeat Simple_repeat 2 37 0 1223 116 0 0 chrX 306521 306685 -176667455 + AluSg/x SINE Alu 137 300 -12 195 42 0 0 chrX 306794 306818 -176667322 + (CA)n Simple_repeat Simple_repeat 1 24 0 2177 104 10 3 chrX 306878 307177 -176666963 + AluSx SINE Alu 1 301 -11 2221 112 6 22 chrX 307355 307667 -176666473 + AluSq SINE Alu 1 307 -6 184 44 67 67 chrX 307674 307719 -176666421 + A-rich Low_complexity Low_complexity 2 46 0 3219 135 4 8 chrX 307921 308424 -176665716 - MER1A DNA MER1_type 0 529 29 1975 170 0 3 chrX 308681 308992 -176665148 - AluJo SINE Alu -2 310 1 579 67 0 0 chrX 309011 309086 -176665054 - Alu SINE Alu -6 305 231 1002 159 27 19 chrX 309087 309404 -176664736 + MLT2A2 LTR ERVL 229 447 -6 1198 207 30 30 chrX 309919 310218 -176663922 - MLT2D LTR ERVL 0 414 116 389 121 0 0 chrX 310219 310277 -176663863 + L1P4 LINE L1 5628 5685 -476 1887 109 0 12 chrX 310280 310527 -176663613 + AluSg SINE Alu 1 244 -66 1719 126 3 44 chrX 310591 310884 -176663256 - Tigger2a DNA MER2_type -153 281 1 307 194 97 32 chrX 310890 310983 -176663157 + L1MC4 LINE L1 6609 6707 -1335 1754 218 50 0 chrX 311842 312245 -176661895 + L1MA8 LINE L1 5620 6042 -249 703 221 0 0 chrX 312246 312386 -176661754 + FLAM_C SINE Alu 2 141 -2 1685 181 24 0 chrX 312388 312676 -176661464 + AluJo SINE Alu 1 295 -17 547 187 92 19 chrX 312695 312874 -176661266 + L1MA7 LINE L1 6032 6209 -91 402 192 29 19 chrX 312949 313053 -176661087 + L1MA7 LINE L1 6184 6288 -3 2478 81 0 0 chrX 313239 313537 -176660603 + AluSq SINE Alu 1 298 -15 841 167 0 32 chrX 313838 313994 -176660146 - AluJo/FRAM SINE Alu -28 284 134 1302 174 126 7 chrX 313994 314264 -176659876 - AluJo SINE Alu -10 302 1 198 0 0 0 chrX 314482 314504 -176659636 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1012 118 0 0 chrX 314670 314806 -176659334 + AluSp/q SINE Alu 160 295 -18 21 36 0 0 chrX 315047 315075 -176659065 + AT_rich Low_complexity Low_complexity 1 28 0 1551 202 57 9 chrX 315119 315450 -176658690 + MLT1A1 LTR MaLR 4 350 -15 988 106 0 0 chrX 315451 315583 -176658557 + AluSg/x SINE Alu 168 299 -11 1836 201 39 79 chrX 316456 316861 -176657279 + L1MA8 LINE L1 5620 6040 -251 698 204 0 0 chrX 316861 316993 -176657147 + FLAM_C SINE Alu 1 132 -1 1836 201 39 79 chrX 316993 317013 -176657127 + L1MA8 LINE L1 6040 6059 -232 1573 192 7 0 chrX 317013 317294 -176656846 + AluJo SINE Alu 11 293 -19 1836 201 39 79 chrX 317294 317463 -176656677 + L1MA8 LINE L1 6059 6191 -100 364 182 0 0 chrX 317594 317660 -176656480 + L1MA7 LINE L1 6184 6249 -42 332 94 19 0 chrX 317696 317749 -176656391 + (TA)n Simple_repeat Simple_repeat 1 54 0 2193 99 0 0 chrX 317971 318277 -176655863 + AluSq SINE Alu 1 306 0 1561 168 16 38 chrX 318553 318729 -176655411 - AluJo SINE Alu -4 308 141 1763 183 3 7 chrX 318729 319029 -176655111 - AluJb SINE Alu -13 299 1 1561 168 16 38 chrX 319029 319167 -176654973 - AluJo SINE Alu -171 141 1 808 220 0 24 chrX 319687 319855 -176654285 - AluJb SINE Alu -15 297 134 1511 146 89 14 chrX 319855 320136 -176654004 - AluJo SINE Alu -10 302 1 207 167 0 0 chrX 320331 320373 -176653767 + A-rich Low_complexity Low_complexity 1 42 0 229 180 22 67 chrX 320469 320558 -176653582 + MER58 DNA MER1_type 74 158 -2262 1108 88 0 0 chrX 320558 320695 -176653445 + AluSp/q SINE Alu 160 296 -17 1589 217 23 9 chrX 321002 321347 -176652793 + MLT1A1 LTR MaLR 1 350 -15 875 115 0 8 chrX 321348 321478 -176652662 + AluSg/x SINE Alu 170 298 -14 1943 148 3 22 chrX 323667 323985 -176650155 + AluSq SINE Alu 1 312 -1 2103 151 40 33 chrX 324231 324303 -176649837 + L1PA15 LINE L1 5758 5828 -337 2085 141 3 0 chrX 324303 324608 -176649532 + AluSp SINE Alu 1 306 -7 2103 151 40 33 chrX 324608 324933 -176649207 + L1PA15 LINE L1 5828 6158 -7 1878 150 24 0 chrX 324936 325229 -176648911 + AluSq SINE Alu 1 300 -13 2069 108 49 7 chrX 325839 326127 -176648013 + AluSx SINE Alu 1 300 -12 1818 200 43 86 chrX 328025 328424 -176645716 + L1MA9 LINE L1 5620 6034 -278 677 207 0 15 chrX 328424 328559 -176645581 + FLAM_C SINE Alu 1 133 0 1818 200 43 86 chrX 328559 328582 -176645558 + L1MA9 LINE L1 6034 6056 -256 1665 171 15 0 chrX 328582 328856 -176645284 + AluJo SINE Alu 11 288 -24 1818 200 43 86 chrX 328856 329073 -176645067 + L1MA9 LINE L1 6056 6215 -97 436 187 7 72 chrX 329112 329251 -176644889 + L1MA7 LINE L1 6161 6290 -1 2041 118 24 0 chrX 329435 329724 -176644416 + AluSq SINE Alu 1 296 -17 2193 158 20 27 chrX 329938 330010 -176644130 + L1PA15 LINE L1 5758 5829 -336 2129 125 10 0 chrX 330010 330306 -176643834 + AluSp SINE Alu 1 299 -14 2193 158 20 27 chrX 330306 330637 -176643503 + L1PA15 LINE L1 5829 6158 -7 1777 172 27 0 chrX 330640 330937 -176643203 + AluSq SINE Alu 1 305 -8 2162 113 3 26 chrX 331489 331799 -176642341 + AluSx SINE Alu 2 304 -8 1988 146 0 31 chrX 334252 334573 -176639567 + AluSq SINE Alu 1 311 -2 403 157 0 0 chrX 334797 334867 -176639273 + L1PA13 LINE L1 5759 5828 -335 1995 125 11 4 chrX 334868 335176 -176638964 + AluSp SINE Alu 1 310 0 1900 126 4 0 chrX 335710 335973 -176638167 + AluSx SINE Alu 1 264 -48 296 171 51 8 chrX 336089 336206 -176637934 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 440 241 89 0 chrX 336209 336321 -176637819 - MER20 DNA MER1_type -5 214 93 380 225 81 38 chrX 336435 336595 -176637545 + MER5A DNA MER1_type 23 189 0 783 163 0 23 chrX 337252 337381 -176636759 + FLAM_C SINE Alu 1 126 -17 1660 171 23 33 chrX 337393 337697 -176636443 + AluJo SINE Alu 1 301 -11 22 0 0 0 chrX 337891 337913 -176636227 + AT_rich Low_complexity Low_complexity 1 22 0 2227 105 3 0 chrX 338055 338359 -176635781 - AluSx SINE Alu -7 305 1 391 316 117 10 chrX 338500 338706 -176635434 + MLT1L LTR MaLR 344 571 -44 2256 86 0 7 chrX 338845 339149 -176634991 - AluSx SINE Alu -10 302 1 225 276 23 11 chrX 339150 339237 -176634903 - Charlie1 DNA MER1_type -32 2729 2642 2158 201 81 25 chrX 339271 339899 -176634241 - Charlie1 DNA MER1_type -94 2667 2005 1619 178 0 7 chrX 340003 340301 -176633839 + AluJo SINE Alu 1 296 -16 304 303 124 45 chrX 340302 340480 -176633660 - L2 LINE L2 -15 3298 3107 1519 174 10 34 chrX 341620 341918 -176632222 - AluJo SINE Alu -21 291 1 2214 74 0 3 chrX 341968 342277 -176631863 + AluSx SINE Alu 1 308 0 1794 170 0 7 chrX 342569 342869 -176631271 - AluJo SINE Alu -14 298 1 25 31 0 0 chrX 342932 342964 -176631176 + AT_rich Low_complexity Low_complexity 1 32 0 742 111 0 16 chrX 343853 343979 -176630161 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 1513 170 62 4 chrX 343979 344255 -176629885 - AluJo SINE Alu -20 292 1 1944 142 70 17 chrX 344391 344735 -176629405 - Tigger2a DNA MER2_type -72 362 1 198 0 0 0 chrX 345233 345255 -176628885 + (TG)n Simple_repeat Simple_repeat 2 23 0 241 154 19 39 chrX 346762 346814 -176627326 + L1M4c LINE L1 2440 2490 -3894 307 153 68 0 chrX 346857 346916 -176627224 + L1MA9 LINE L1 6250 6312 0 455 63 0 0 chrX 347035 347098 -176627042 + L1MA9 LINE L1 6250 6312 0 353 204 28 106 chrX 348053 348195 -176625945 - MER96B DNA MER1_type? -285 132 2 206 265 0 0 chrX 349025 349074 -176625066 + T-rich Low_complexity Low_complexity 1 49 0 295 215 0 51 chrX 349077 349156 -176624984 - U13 snRNA snRNA -2 102 28 2123 113 0 13 chrX 349160 349470 -176624670 + AluSx SINE Alu 1 306 -6 544 114 0 0 chrX 349788 349867 -176624273 - MADE1 DNA Mariner 0 80 2 243 0 0 0 chrX 350100 350127 -176624013 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2134 108 0 0 chrX 350134 350422 -176623718 - AluSx SINE Alu -24 288 1 728 181 0 0 chrX 350425 350541 -176623599 - FLAM_A SINE Alu -15 127 12 1380 285 85 21 chrX 351019 351499 -176622641 + MLT1H LTR MaLR 39 549 0 224 366 74 25 chrX 351500 351702 -176622438 + L2 LINE L2 2467 2678 -636 407 241 107 0 chrX 352896 353008 -176621132 - L2 LINE L2 -5 3308 3185 476 298 24 6 chrX 353182 353350 -176620790 + (CA)n Simple_repeat Simple_repeat 2 172 0 205 167 17 17 chrX 353404 353464 -176620676 + (CA)n Simple_repeat Simple_repeat 1 60 0 336 367 6 22 chrX 353497 353677 -176620463 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 344 360 12 6 chrX 353918 354079 -176620061 + (CA)n Simple_repeat Simple_repeat 1 162 0 27 0 0 0 chrX 354689 354716 -176619424 + AT_rich Low_complexity Low_complexity 1 27 0 1471 173 23 27 chrX 354727 355028 -176619112 + AluJo SINE Alu 1 300 -12 2268 157 3 9 chrX 355147 355537 -176618603 + MLT1B LTR MaLR 4 467 0 1267 187 4 0 chrX 355537 355762 -176618378 + MLT1B LTR MaLR 158 383 -7 1877 128 9 31 chrX 356541 356641 -176617499 + AluJo SINE Alu 1 102 -210 3189 158 19 95 chrX 356641 356913 -176617227 + LTR8 LTR ERV1 2 293 -398 1998 138 0 0 chrX 356913 357224 -176616916 + AluSx SINE Alu 1 311 -1 3189 158 19 95 chrX 357224 357698 -176616442 + LTR8 LTR ERV1 293 691 0 1877 128 9 31 chrX 357698 357916 -176616224 + AluJo SINE Alu 102 312 0 2097 216 31 103 chrX 357980 358599 -176615541 + LTR8 LTR ERV1 1 663 -28 1721 176 0 7 chrX 358599 358900 -176615240 + AluJo SINE Alu 1 299 -13 3346 138 17 87 chrX 358908 359049 -176615091 + LTR9 LTR ERV1 1 150 -462 2589 26 3 0 chrX 359049 359356 -176614784 + AluY SINE Alu 1 308 -3 3346 138 17 87 chrX 359356 359872 -176614268 + LTR9 LTR ERV1 150 612 0 2097 216 31 103 chrX 359872 359988 -176614152 + LTR8 LTR ERV1 670 691 0 1830 133 44 3 chrX 360057 360350 -176613790 - AluJb SINE Alu -7 305 1 1715 171 91 23 chrX 360566 360952 -176613188 + LTR49 LTR ERV1 1 412 -183 1561 127 4 8 chrX 360974 361210 -176612930 + L1PA15 LINE L1 5718 5952 -213 1034 161 174 58 chrX 361210 361520 -176612620 + MER4A LTR ERV1 1 346 -318 240 76 0 197 chrX 361525 361591 -176612549 + MER4A LTR ERV1 306 358 -306 371 145 40 13 chrX 361601 361677 -176612463 + MER4C LTR ERV1 279 356 -109 1473 108 0 0 chrX 361757 361969 -176612171 + L1PA15 LINE L1 5949 6160 -5 851 209 25 0 chrX 361969 362132 -176612008 + LTR29 LTR ERV1 456 622 0 225 94 0 0 chrX 362154 362186 -176611954 + (A)n Simple_repeat Simple_repeat 1 32 0 1017 89 0 0 chrX 362250 362385 -176611755 + AluSq/x SINE Alu 1 135 -177 2163 118 3 0 chrX 362385 362691 -176611449 + AluSx SINE Alu 1 307 -5 2087 106 0 52 chrX 362977 363306 -176610834 - AluJo SINE Alu 0 312 1 354 98 0 0 chrX 363446 363497 -176610643 + (TG)n Simple_repeat Simple_repeat 1 51 0 340 283 18 53 chrX 364546 364659 -176609481 - L1MC4 LINE L1 -1339 6703 6595 324 296 104 52 chrX 364653 364923 -176609217 + L1ME4a LINE L1 5684 5967 -154 * 332 179 0 64 chrX 364865 364943 -176609197 - L1MCa LINE L1 -4359 2067 1995 325 222 33 67 chrX 364925 365015 -176609125 + L1MC4 LINE L1 6614 6700 -1342 * 241 213 27 7 chrX 365017 365100 -176609040 + (TA)n Simple_repeat Simple_repeat 1 90 -63 2151 112 0 0 chrX 365100 365403 -176608737 + AluSg1 SINE Alu 1 303 -6 241 213 27 7 chrX 365403 365469 -176608671 + (TA)n Simple_repeat Simple_repeat 90 153 0 307 301 0 43 chrX 365518 365611 -176608529 + L1MC4 LINE L1 6615 6703 -1339 * 308 295 0 42 chrX 365588 365683 -176608457 + L1MC4 LINE L1 6615 6705 -1337 309 231 18 4 chrX 365686 365917 -176608223 + (TA)n Simple_repeat Simple_repeat 1 234 0 388 271 6 35 chrX 365925 366095 -176608045 + (CATATA)n Simple_repeat Simple_repeat 2 166 0 1576 122 52 15 chrX 367881 368152 -176605988 + AluJo SINE Alu 30 310 -2 1476 163 3 91 chrX 368356 368473 -176605667 + AluJb SINE Alu 1 127 -185 312 27 0 0 chrX 368473 368510 -176605630 + (CA)n Simple_repeat Simple_repeat 2 38 0 1476 163 3 91 chrX 368510 368723 -176605417 + AluJb SINE Alu 127 302 -10 1997 119 3 32 chrX 368743 369055 -176605085 - AluSx SINE Alu -9 303 1 315 337 49 33 chrX 369299 369483 -176604657 - L2 LINE L2 -27 3286 3100 1799 106 14 28 chrX 370248 370530 -176603610 - AluSx SINE Alu -23 289 12 2082 124 3 0 chrX 370530 370837 -176603303 - AluSx SINE Alu -4 308 1 1211 186 34 90 chrX 370875 371197 -176602943 + AluJo SINE Alu 1 304 -8 314 302 22 36 chrX 371200 371339 -176602801 + L1MDa LINE L1 2367 2503 -4037 1435 209 0 16 chrX 371806 372112 -176602028 - AluJo SINE Alu -11 301 1 2182 106 0 0 chrX 372190 372483 -176601657 - AluSq SINE Alu -20 293 1 181 196 0 98 chrX 372607 372658 -176601482 + L2 LINE L2 3000 3045 -227 967 137 6 12 chrX 372958 373119 -176601021 - FRAM SINE Alu -16 160 1 2227 103 0 0 chrX 373129 373431 -176600709 - AluSq SINE Alu -11 302 1 705 93 9 0 chrX 373701 373809 -176600331 - MLT1B LTR MaLR -123 267 159 1368 140 5 11 chrX 373810 374045 -176600095 - MLT1B LTR MaLR 0 467 158 2240 155 11 12 chrX 374045 374436 -176599704 - MLT1B LTR MaLR 0 467 1 2154 104 0 26 chrX 374488 374795 -176599345 + AluSx SINE Alu 1 299 -13 3933 111 21 79 chrX 375471 376176 -176597964 + MER4A LTR ERV1 1 664 0 2046 107 43 0 chrX 376456 376755 -176597385 - AluSx SINE Alu 0 312 1 294 50 0 0 chrX 377039 377079 -176597061 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 1958 127 3 0 chrX 377079 377363 -176596777 - AluSx SINE Alu -27 285 1 304 302 19 9 chrX 377634 377740 -176596400 + CT-rich Low_complexity Low_complexity 2 108 0 2957 177 23 76 chrX 377977 378704 -176595436 + LTR8 LTR ERV1 3 691 0 4653 85 41 0 chrX 379361 379995 -176594145 - PABL_A LTR ERV1 0 660 1 661 111 0 10 chrX 380033 380132 -176594008 + MER4A LTR ERV1 1 98 -566 445 189 7 45 chrX 380132 380280 -176593860 + MER4A LTR ERV1 261 461 -203 1933 115 35 0 chrX 380320 380608 -176593532 - AluSg SINE Alu -12 298 1 23 33 0 0 chrX 380616 380646 -176593494 + AT_rich Low_complexity Low_complexity 1 30 0 227 30 0 30 chrX 380840 380873 -176593267 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1047 186 4 75 chrX 381021 381109 -176593031 - MER2 DNA MER2_type -135 210 117 2080 123 0 0 chrX 381109 381409 -176592731 + AluSx SINE Alu 1 300 -12 1047 186 4 75 chrX 381409 381546 -176592594 - MER2 DNA MER2_type -228 117 1 189 0 0 0 chrX 381646 381667 -176592473 + (TTA)n Simple_repeat Simple_repeat 2 22 0 835 154 28 0 chrX 381707 381850 -176592290 - AluSg/x SINE Alu -13 299 153 278 246 67 22 chrX 381851 381985 -176592155 - L1M4 LINE L1 -1031 5115 4976 1918 111 42 7 chrX 381992 382280 -176591860 + AluSx SINE Alu 1 298 -14 1890 138 13 10 chrX 382484 382795 -176591345 - AluJo SINE Alu 0 312 1 1072 54 0 0 chrX 383148 383277 -176590863 - AluY SINE Alu -182 129 1 1069 175 0 0 chrX 383434 383623 -176590517 - AluJb SINE Alu -1 311 123 1522 57 5 14 chrX 384185 384394 -176589746 - AluYa5 SINE Alu -6 305 99 4035 71 18 7 chrX 384394 384946 -176589194 + LTR6B LTR ERV1 1 558 0 855 40 0 0 chrX 384947 385048 -176589092 - AluYa5 SINE Alu -210 101 1 2286 109 0 0 chrX 385070 385382 -176588758 - AluSx SINE Alu 0 312 1 3784 194 19 4 chrX 385415 386168 -176587972 - L1MB5 LINE L1 -6 6168 5405 198 71 0 0 chrX 386719 386747 -176587393 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1140 114 0 0 chrX 387155 387201 -176586939 + (TTCC)n Simple_repeat Simple_repeat 1 222 0 1140 114 0 0 chrX 387201 387377 -176586763 + (TTCC)n Simple_repeat Simple_repeat 2 177 0 1179 112 0 0 chrX 387395 387574 -176586566 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 415 216 11 28 chrX 387817 387998 -176586142 + CT-rich Low_complexity Low_complexity 3 180 0 23 54 0 0 chrX 388009 388046 -176586094 + AT_rich Low_complexity Low_complexity 1 37 0 2668 204 31 4 chrX 388323 388868 -176585272 - L1MB5 LINE L1 0 6174 5615 1674 190 3 31 chrX 389902 390223 -176583917 + AluJo SINE Alu 1 312 0 1289 191 22 4 chrX 390653 390925 -176583215 - L1MB5 LINE L1 -89 6085 5809 418 247 159 12 chrX 391071 391241 -176582899 + MLT1J2 LTR MaLR 256 450 0 228 378 56 14 chrX 391517 391660 -176582480 - MIR SINE MIR -11 251 103 2266 131 0 0 chrX 392258 392570 -176581570 - AluSx SINE Alu 0 312 1 3015 143 18 64 chrX 393938 394191 -176579949 + MER39B LTR ERV1 2 265 -388 2619 52 0 3 chrX 394191 394498 -176579642 + AluY SINE Alu 1 306 -5 3015 143 18 64 chrX 394498 394617 -176579523 + MER39B LTR ERV1 265 388 -265 2462 73 0 0 chrX 394617 394905 -176579235 + AluSc SINE Alu 1 288 -21 3015 143 18 64 chrX 394905 395186 -176578954 + MER39B LTR ERV1 388 626 -27 396 59 0 0 chrX 395639 395690 -176578450 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 1944 147 0 17 chrX 395690 395990 -176578150 - AluSg SINE Alu -15 295 1 2090 143 0 0 chrX 395990 396297 -176577843 - AluSx SINE Alu -5 307 1 3396 147 11 0 chrX 396615 397158 -176576982 - MER41A LTR ERV1 0 554 6 3172 166 46 88 chrX 397163 397742 -176576398 - LTR39 LTR ERV1 -8 775 238 1960 135 10 10 chrX 397742 398030 -176576110 + AluSx SINE Alu 1 288 -24 3172 166 46 88 chrX 398030 398259 -176575881 - LTR39 LTR ERV1 -545 238 1 334 278 21 10 chrX 399013 399110 -176575030 - MER5A DNA MER1_type -86 103 6 1235 178 9 0 chrX 399119 399349 -176574791 - MLT1B LTR MaLR -1 389 158 1093 175 5 24 chrX 399349 399586 -176574554 - MLT1B LTR MaLR 0 467 159 2178 167 8 13 chrX 399587 399976 -176574164 - MLT1B LTR MaLR 0 390 4 1880 195 4 30 chrX 400005 400299 -176573841 - MLT1B LTR MaLR 0 396 111 2307 69 33 33 chrX 400299 400602 -176573538 - AluY SINE Alu -8 303 1 1880 195 4 30 chrX 400602 400711 -176573429 - MLT1B LTR MaLR -285 111 1 1014 97 0 156 chrX 400864 401050 -176573090 - AluSg/x SINE Alu -18 294 138 737 254 46 0 chrX 401748 401945 -176572195 - MER20 DNA MER1_type 0 219 14 602 149 19 7 chrX 401963 402117 -176572023 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 327 194 37 37 chrX 402128 402236 -176571904 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 859 228 47 9 chrX 402253 402464 -176571676 - MER20 DNA MER1_type 0 219 1 346 194 62 131 chrX 402650 402810 -176571330 + MER5A DNA MER1_type 41 189 0 2348 125 0 0 chrX 403054 403366 -176570774 - AluSx SINE Alu 0 312 1 4046 179 80 9 chrX 403601 404372 -176569768 + LTR1B LTR ERV1 1 826 0 1030 187 41 8 chrX 404458 404704 -176569436 - L1MA4 LINE L1 -1 6299 6046 1036 109 14 0 chrX 405000 405147 -176568993 - L1PA10 LINE L1 0 6168 6020 3654 124 26 0 chrX 405407 405947 -176568193 + MER41A LTR ERV1 1 554 0 270 280 17 68 chrX 406075 406100 -176568040 + MIR SINE MIR 111 136 -126 3485 69 21 5 chrX 406100 406537 -176567603 + MLT2A1 LTR ERVL 1 444 0 270 280 17 68 chrX 406537 406629 -176567511 + MIR SINE MIR 136 222 -40 1545 222 0 10 chrX 406660 406971 -176567169 + AluJo SINE Alu 5 312 0 1464 161 3 89 chrX 406971 407180 -176566960 - MER47A DNA MER2_type -2016 307 136 2018 128 24 14 chrX 407180 407477 -176566663 + AluSq SINE Alu 1 300 -13 1464 161 3 89 chrX 407477 407603 -176566537 - MER47A DNA MER2_type -2187 136 1 2296 113 0 0 chrX 409934 410226 -176563914 - AluSx SINE Alu -18 294 3 504 158 0 0 chrX 410284 410379 -176563761 + (TG)n Simple_repeat Simple_repeat 1 95 0 852 230 0 0 chrX 410492 410688 -176563452 + L1MB5 LINE L1 5810 6005 -169 524 191 0 9 chrX 410691 410796 -176563344 + MLT1C LTR MaLR 1 104 -363 440 80 0 148 chrX 410801 410835 -176563305 + MADE1 DNA Mariner 6 21 -59 2275 118 0 0 chrX 410835 411131 -176563009 - AluSg SINE Alu -14 296 1 440 80 0 148 chrX 411131 411184 -176562956 + MADE1 DNA Mariner 21 80 0 1003 176 131 0 chrX 411186 411407 -176562733 + MLT1C LTR MaLR 105 354 -113 2048 117 0 21 chrX 411408 411690 -176562450 + AluSx SINE Alu 1 276 -36 794 155 8 24 chrX 411690 411951 -176562189 + GA-rich Low_complexity Low_complexity 1 257 0 490 254 0 30 chrX 411951 412085 -176562055 + MLT1C LTR MaLR 338 467 0 597 189 13 75 chrX 412099 412215 -176561925 + L1MB5 LINE L1 6026 6131 -43 1793 115 58 0 chrX 412215 412475 -176561665 + AluSx SINE Alu 22 296 -16 597 189 13 75 chrX 412475 412517 -176561623 + L1MB5 LINE L1 6131 6174 0 694 251 52 22 chrX 412662 412876 -176561264 - MER58B DNA MER1_type -2079 341 71 2095 134 3 6 chrX 412876 413189 -176560951 + AluSx SINE Alu 1 312 0 694 251 52 22 chrX 413189 413258 -176560882 - MER58B DNA MER1_type -2349 71 6 2261 124 0 6 chrX 413653 413967 -176560173 + AluSx SINE Alu 1 312 0 3378 80 0 13 chrX 414174 414624 -176559516 + MLT2A1 LTR ERVL 1 444 0 2180 125 3 28 chrX 415257 415577 -176558563 + AluSx SINE Alu 1 312 0 225 0 0 0 chrX 415595 415620 -176558520 + (CA)n Simple_repeat Simple_repeat 2 26 0 295 294 50 0 chrX 415851 415970 -176558170 + L1M4 LINE L1 3851 3975 -2171 2468 65 0 19 chrX 416038 416346 -176557794 - AluSc SINE Alu -7 302 1 1168 95 0 0 chrX 416740 416888 -176557252 + AluSc SINE Alu 1 148 -161 276 111 0 0 chrX 418369 418414 -176555726 + (A)n Simple_repeat Simple_repeat 1 45 0 2427 90 0 0 chrX 418735 419035 -176555105 + AluSx SINE Alu 1 300 -12 184 271 21 0 chrX 419168 419216 -176554924 - L2 LINE L2 -4 3309 3261 2263 81 0 52 chrX 420933 421260 -176552880 - AluSp SINE Alu 0 313 2 2009 138 0 13 chrX 421302 421607 -176552533 + AluSx SINE Alu 2 302 -10 1725 141 6 72 chrX 421886 422205 -176551935 + AluJo SINE Alu 1 298 -14 1728 95 9 0 chrX 422318 422540 -176551600 - AluSg/x SINE Alu -17 293 70 2375 103 6 3 chrX 423259 423570 -176550570 + AluSx SINE Alu 1 312 0 2337 97 7 3 chrX 423580 423888 -176550252 + AluSc SINE Alu 1 309 0 2348 91 0 0 chrX 424155 424480 -176549660 - AluY SINE Alu 0 325 1 2624 71 0 0 chrX 424824 425135 -176549005 - AluY SINE Alu 0 311 1 530 289 168 43 chrX 426206 426449 -176547691 + HAL1 LINE L1 881 1092 -3314 2397 116 0 0 chrX 426449 426759 -176547381 + AluSx SINE Alu 1 310 -2 530 289 168 43 chrX 426759 426937 -176547203 + HAL1 LINE L1 1092 3227 -1179 578 218 12 18 chrX 427887 428234 -176545906 + GA-rich Low_complexity Low_complexity 1 344 0 376 226 33 13 chrX 428247 428615 -176545525 + GA-rich Low_complexity Low_complexity 1 375 0 383 41 0 0 chrX 428957 429006 -176545134 - MADE1 DNA Mariner -2 78 30 294 77 19 58 chrX 429001 429053 -176545087 + AluJo SINE Alu 93 142 -160 * 301 121 0 121 chrX 429054 429120 -176545020 - AluJo SINE Alu -151 151 94 * 354 80 0 0 chrX 429116 429166 -176544974 + MADE1 DNA Mariner 30 79 -1 2405 79 7 3 chrX 429442 429747 -176544393 - AluSx SINE Alu -6 306 1 1606 111 0 9 chrX 430095 430312 -176543828 - AluSg/x SINE Alu 0 309 95 21 0 0 0 chrX 430559 430580 -176543560 + AT_rich Low_complexity Low_complexity 1 21 0 2349 101 0 0 chrX 430583 430879 -176543261 + AluY SINE Alu 1 296 -15 1914 161 0 3 chrX 430883 431182 -176542958 - AluJo SINE Alu -12 300 3 923 127 11 14 chrX 431439 431730 -176542410 + THE1C LTR MaLR 1 375 0 2118 110 20 17 chrX 431919 432220 -176541920 + AluSx SINE Alu 1 302 -10 2255 109 30 0 chrX 432559 432861 -176541279 + AluSx SINE Alu 1 311 -1 2317 97 3 0 chrX 433278 433576 -176540564 + AluSq SINE Alu 1 299 -14 2498 72 0 10 chrX 433896 434202 -176539938 - AluY SINE Alu -8 303 1 2085 118 3 0 chrX 435142 435448 -176538692 + AluSx SINE Alu 1 312 0 22 0 0 0 chrX 435623 435645 -176538495 + AT_rich Low_complexity Low_complexity 1 22 0 1674 192 3 10 chrX 435650 435941 -176538199 - AluJo SINE Alu -23 289 1 2127 105 0 33 chrX 435974 436142 -176537998 - AluSx SINE Alu -17 295 140 2115 124 24 0 chrX 436142 436432 -176537708 - AluSx SINE Alu -15 297 1 2127 105 0 33 chrX 436432 436568 -176537572 - AluSx SINE Alu -172 140 1 546 155 0 0 chrX 437014 437111 -176537029 + CT-rich Low_complexity Low_complexity 4 100 0 1465 118 0 15 chrX 438512 438736 -176535404 + AluSq SINE Alu 82 302 0 22 0 0 0 chrX 438912 438934 -176535206 + AT_rich Low_complexity Low_complexity 1 22 0 779 333 79 26 chrX 438996 439459 -176534681 + L1ME4a LINE L1 5481 5973 -148 1701 193 0 37 chrX 439459 439781 -176534359 + AluJo SINE Alu 1 310 -2 779 333 79 26 chrX 439781 439813 -176534327 + L1ME4a LINE L1 5973 6002 -119 2347 114 0 3 chrX 440131 440439 -176533701 + AluSx SINE Alu 3 309 -3 674 209 40 57 chrX 440922 441099 -176533041 - MER45A DNA AcHobo -4 174 1 209 232 20 71 chrX 441577 441676 -176532464 + GA-rich Low_complexity Low_complexity 2 95 0 2558 74 0 3 chrX 442386 442696 -176531444 + AluY SINE Alu 1 309 -2 1994 139 36 0 chrX 442824 443126 -176531014 + AluSq SINE Alu 1 313 0 2256 113 0 3 chrX 443688 443990 -176530150 - AluSx SINE Alu -11 301 1 1212 154 45 136 chrX 444388 444718 -176529422 + AluJo SINE Alu 1 300 -2 2350 103 0 0 chrX 444738 445038 -176529102 + AluSg SINE Alu 1 300 -10 775 231 138 7 chrX 445048 445353 -176528787 + MLT1C LTR MaLR 1 361 -144 1317 254 58 27 chrX 445368 445816 -176528324 + MLT1C LTR MaLR 6 467 0 650 226 6 19 chrX 446202 446361 -176527779 + Tigger1 DNA MER2_type 1 157 -2261 * 798 155 139 0 chrX 446354 446541 -176527599 + Tigger1 DNA MER2_type 2206 2418 0 21 36 0 0 chrX 446668 446696 -176527444 + AT_rich Low_complexity Low_complexity 1 28 0 275 243 108 0 chrX 446699 446810 -176527330 + MER69 DNA AcHobo 2313 2435 -91 365 274 30 7 chrX 447501 447636 -176526504 + (TG)n Simple_repeat Simple_repeat 2 139 0 512 249 17 22 chrX 447647 447828 -176526312 + (TG)n Simple_repeat Simple_repeat 1 180 0 207 216 21 21 chrX 447830 447927 -176526213 + (TATG)n Simple_repeat Simple_repeat 4 100 0 * 433 232 0 11 chrX 447914 448095 -176526045 + (TG)n Simple_repeat Simple_repeat 2 180 0 450 326 6 6 chrX 448132 448310 -176525830 + (TG)n Simple_repeat Simple_repeat 2 179 0 2240 163 21 74 chrX 448645 449003 -176525137 - L1MA8 LINE L1 -111 6180 5805 2228 99 17 7 chrX 449003 449297 -176524843 - AluSx SINE Alu -15 297 1 2240 163 21 74 chrX 449297 449361 -176524779 - L1MA8 LINE L1 -486 5805 5739 358 247 0 0 chrX 449361 449454 -176524686 - L1MB8 LINE L1 -3 6175 6083 2240 163 21 74 chrX 449454 449587 -176524553 - L1MA8 LINE L1 -552 5739 5653 319 213 11 85 chrX 449606 449700 -176524440 - L1MC4 LINE L1 -1339 6703 6617 306 227 10 82 chrX 449719 449816 -176524324 - L1MC4 LINE L1 -1339 6703 6614 300 239 44 62 chrX 449752 449865 -176524275 + L1MC3 LINE L1 6569 6679 -1106 * 2353 99 0 7 chrX 449884 450187 -176523953 + AluSg SINE Alu 1 301 -9 422 363 0 11 chrX 451298 451480 -176522660 + (TG)n Simple_repeat Simple_repeat 1 180 0 261 296 52 23 chrX 451495 451667 -176522473 + (CATG)n Simple_repeat Simple_repeat 3 179 0 * 337 368 0 16 chrX 451577 451810 -176522330 + (TG)n Simple_repeat Simple_repeat 1 229 0 184 111 44 22 chrX 451810 451855 -176522285 + (CATG)n Simple_repeat Simple_repeat 3 48 0 1955 163 0 7 chrX 453684 454004 -176520136 - AluSx SINE Alu 0 312 4 1325 89 6 0 chrX 454056 454224 -176519916 + AluSg/x SINE Alu 122 290 -22 25 0 0 0 chrX 454224 454249 -176519891 + AT_rich Low_complexity Low_complexity 1 25 0 2415 77 0 3 chrX 454666 454977 -176519163 - AluY SINE Alu -1 310 1 859 235 46 42 chrX 455305 455590 -176518550 + L1MA8 LINE L1 6004 6289 -2 1866 159 0 3 chrX 456040 456330 -176517810 + AluJb SINE Alu 1 289 -23 1992 153 36 0 chrX 456332 456633 -176517507 + AluSx SINE Alu 1 312 0 257 283 35 55 chrX 456907 457052 -176517088 + MER5A DNA MER1_type 22 163 -26 414 0 0 0 chrX 457403 457449 -176516691 + (CA)n Simple_repeat Simple_repeat 2 47 0 2103 261 45 24 chrX 457475 457966 -176516174 + MER82 DNA MER2_type 9 488 -165 2285 91 3 23 chrX 457966 458274 -176515866 + AluSx SINE Alu 1 302 -10 2103 261 45 24 chrX 458274 458314 -176515826 + MER82 DNA MER2_type 488 526 -127 896 153 0 13 chrX 458314 458471 -176515669 + L1PA14 LINE L1 6007 6161 0 2103 261 45 24 chrX 458471 458566 -176515574 + MER82 DNA MER2_type 526 649 -4 348 304 0 65 chrX 458776 458914 -176515226 + L2 LINE L2 2951 3079 -193 520 247 96 14 chrX 458980 459126 -176515014 + MER5B DNA MER1_type 6 163 -15 533 244 0 6 chrX 459761 459933 -176514207 + (TGGG)n Simple_repeat Simple_repeat 2 172 0 894 208 0 6 chrX 459950 460270 -176513870 + (TGGA)n Simple_repeat Simple_repeat 1 317 0 527 195 18 6 chrX 460284 460453 -176513687 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 954 156 0 0 chrX 460469 460720 -176513420 + (TGGA)n Simple_repeat Simple_repeat 1 251 0 218 345 86 0 chrX 461005 461121 -176513019 + MIR SINE MIR 66 191 -71 1467 197 52 7 chrX 461298 461587 -176512553 + AluSx SINE Alu 1 302 -10 2272 118 0 0 chrX 461587 461892 -176512248 + AluSg SINE Alu 1 305 -5 318 87 0 0 chrX 461895 461941 -176512199 + (GAAAA)n Simple_repeat Simple_repeat 5 50 0 1093 176 0 11 chrX 461943 462131 -176512009 + AluJo SINE Alu 118 303 -9 1244 208 0 0 chrX 462371 462578 -176511562 + AluJo SINE Alu 84 290 -22 1741 172 57 7 chrX 462586 462883 -176511257 + AluJo SINE Alu 1 312 0 2096 101 0 7 chrX 464386 464664 -176509476 + AluSq SINE Alu 35 310 -3 1442 206 77 3 chrX 464748 465112 -176509028 + MER34B LTR ERV1 148 538 -27 2046 136 0 0 chrX 465131 465417 -176508723 + AluSx SINE Alu 11 296 -16 1192 185 20 0 chrX 465428 465628 -176508512 + AluJo SINE Alu 86 289 -23 1316 175 5 0 chrX 465635 465841 -176508299 + AluSg/x SINE Alu 86 292 -20 2093 124 0 7 chrX 466287 466586 -176507554 - AluSx SINE Alu -15 297 1 602 271 15 20 chrX 467038 467241 -176506899 - MER20 DNA MER1_type 0 219 18 408 103 10 113 chrX 467834 467931 -176506209 + AluSc SINE Alu 221 307 -2 22 35 0 0 chrX 469836 469865 -176504275 + GC_rich Low_complexity Low_complexity 1 29 0 2316 97 7 0 chrX 471053 471361 -176502779 + AluSx SINE Alu 1 310 -2 2402 149 36 24 chrX 471363 471943 -176502197 - MER4E LTR ERV1 -7 759 19 1888 133 0 14 chrX 471943 472222 -176501918 - AluSx SINE Alu -1 311 37 2402 149 36 24 chrX 472222 472242 -176501898 - MER4E LTR ERV1 -747 19 1 4324 47 4 25 chrX 472335 472371 -176501769 - L1PA7 LINE L1 -2 6152 6117 2584 50 0 10 chrX 472371 472672 -176501468 + AluY SINE Alu 1 298 -13 4324 47 4 25 chrX 472672 473190 -176500950 - L1PA7 LINE L1 -37 6117 5610 1947 148 34 0 chrX 474520 474818 -176499322 - AluSq SINE Alu -5 308 1 450 176 0 0 chrX 474927 475012 -176499128 + (CA)n Simple_repeat Simple_repeat 1 85 0 2500 103 0 0 chrX 475261 475573 -176498567 + AluSx SINE Alu 1 312 0 1925 139 43 10 chrX 475603 475904 -176498236 + AluSx SINE Alu 1 311 -1 892 118 0 7 chrX 475973 476109 -176498031 + MSTA LTR MaLR 1 135 -293 391 106 152 0 chrX 476109 476175 -176497965 + MSTA LTR MaLR 353 428 0 1241 81 81 11 chrX 476175 476234 -176497906 + Charlie3 DNA MER1_type 2509 2562 -144 261 0 0 0 chrX 476234 476263 -176497877 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1241 81 81 11 chrX 476263 476388 -176497752 + Charlie3 DNA MER1_type 2562 2706 0 306 298 48 0 chrX 476421 476505 -176497635 + L1MC3 LINE L1 7163 7250 -535 726 172 0 29 chrX 476510 476756 -176497384 + (TGGA)n Simple_repeat Simple_repeat 1 238 0 2309 95 0 10 chrX 476823 477127 -176497013 - AluY SINE Alu -10 301 1 2498 87 3 0 chrX 477127 477436 -176496704 - AluSp SINE Alu -2 311 1 752 203 0 0 chrX 477793 477926 -176496214 - FLAM_A SINE Alu 0 133 1 1242 168 33 5 chrX 477969 478183 -176495957 - AluJo SINE Alu -92 220 1 1323 217 91 29 chrX 478620 478970 -176495170 + MLT1A2 LTR MaLR 1 372 -2 226 267 13 40 chrX 479108 479183 -176494957 + MLT1J2 LTR MaLR 58 130 -320 383 299 7 95 chrX 479190 479494 -176494646 + MLT1J LTR MaLR 171 447 -64 624 263 10 0 chrX 479690 479986 -176494154 + (TGGA)n Simple_repeat Simple_repeat 1 299 0 801 213 0 0 chrX 480036 480311 -176493829 + (TGGA)n Simple_repeat Simple_repeat 1 275 0 630 208 0 0 chrX 480332 480486 -176493654 + (TGGA)n Simple_repeat Simple_repeat 4 157 0 231 125 0 0 chrX 481467 481507 -176492633 + (CA)n Simple_repeat Simple_repeat 1 40 0 2264 105 3 3 chrX 481632 481936 -176492204 + AluSg SINE Alu 1 304 -6 593 283 112 0 chrX 481944 482131 -176492009 - MLT1G1 LTR MaLR -381 214 7 180 355 0 0 chrX 482491 482553 -176491587 - L2 LINE L2 -218 3054 2993 1371 192 12 0 chrX 482692 482932 -176491208 + AluJo SINE Alu 54 296 -16 1035 261 94 12 chrX 482950 483280 -176490860 + MLT1H LTR MaLR 185 541 -8 239 229 0 0 chrX 484071 484119 -176490021 + (TG)n Simple_repeat Simple_repeat 1 48 0 2242 109 13 0 chrX 484263 484565 -176489575 + AluSx SINE Alu 1 306 -6 2463 96 0 0 chrX 485160 485472 -176488668 + AluSx SINE Alu 1 312 0 1919 141 12 6 chrX 485617 485936 -176488204 + L1PB2 LINE L1 5521 5841 -310 1695 119 4 8 chrX 486046 486297 -176487843 - L1P4 LINE L1 -575 5593 5344 353 221 0 0 chrX 486298 486375 -176487765 - MER4D LTR ERV1 -512 360 284 1949 145 20 7 chrX 486379 486683 -176487457 - AluSx SINE Alu -4 308 1 892 126 33 44 chrX 486687 486870 -176487270 - Tigger7 DNA MER2_type -92 2495 2315 1696 153 78 54 chrX 486926 486993 -176487147 - MSTA LTR MaLR -5 423 359 2120 85 11 7 chrX 486993 487274 -176486866 + AluSx SINE Alu 1 282 -30 180 0 0 0 chrX 487277 487297 -176486843 + (CA)n Simple_repeat Simple_repeat 1 20 0 1696 153 78 54 chrX 487297 487597 -176486543 - MSTA LTR MaLR -70 358 43 2063 96 0 7 chrX 487931 488203 -176485937 + AluSx SINE Alu 43 312 0 719 84 0 0 chrX 488642 488737 -176485403 + AluSc SINE Alu 2 96 -213 1949 153 0 25 chrX 489174 489494 -176484646 - AluSx SINE Alu 0 312 1 644 256 17 0 chrX 489563 489735 -176484405 + MER45A DNA AcHobo 1 175 -3 846 119 0 0 chrX 490753 490871 -176483269 - AluSq SINE Alu -155 158 41 2173 136 3 0 chrX 491201 491510 -176482630 - AluSx SINE Alu -2 310 1 310 278 41 0 chrX 492822 492919 -176481221 + MER34C LTR ERV1 1 101 -484 319 198 33 22 chrX 493015 493106 -176481034 - MER90 LTR ERV1 -477 98 7 742 245 58 5 chrX 493641 493849 -176480291 - MLT1D LTR MaLR -286 219 1 198 318 37 28 chrX 494620 494727 -176479413 + L2 LINE L2 2930 3037 -235 192 77 0 0 chrX 495153 495179 -176478961 + (GA)n Simple_repeat Simple_repeat 1 26 0 2287 95 7 0 chrX 496261 496555 -176477585 + AluSg SINE Alu 1 296 -14 2125 109 6 40 chrX 496795 497116 -176477024 + AluSx SINE Alu 1 310 -2 331 328 85 17 chrX 497241 497595 -176476545 + L1ME4a LINE L1 5491 5868 -253 646 274 12 12 chrX 498366 498534 -176475606 - MER45A DNA AcHobo -3 175 8 2314 94 0 10 chrX 499342 499640 -176474500 - AluSg SINE Alu -15 295 1 22 70 0 0 chrX 499758 499801 -176474339 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chrX 500181 500204 -176473936 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 29 47 0 0 chrX 501007 501050 -176473090 + AT_rich Low_complexity Low_complexity 1 43 0 2198 90 3 21 chrX 501126 501450 -176472690 + AluSx SINE Alu 1 319 0 537 328 6 0 chrX 502312 502486 -176471654 - MER45A DNA AcHobo -3 175 1 254 132 19 0 chrX 503003 503056 -176471084 + GA-rich Low_complexity Low_complexity 1 54 0 228 67 0 0 chrX 503733 503763 -176470377 + (CG)n Simple_repeat Simple_repeat 2 31 0 * 330 26 0 0 chrX 503762 503801 -176470339 + (CA)n Simple_repeat Simple_repeat 1 39 0 2282 93 3 0 chrX 503904 504194 -176469946 - AluSc SINE Alu -10 299 9 2429 81 0 7 chrX 504894 505203 -176468937 - AluSc SINE Alu -2 307 1 2303 100 0 3 chrX 505876 506177 -176467963 + AluSx SINE Alu 1 300 -12 303 256 53 15 chrX 506177 506310 -176467830 - MER33 DNA MER1_type -19 344 207 42 77 0 0 chrX 506310 506401 -176467739 + AT_rich Low_complexity Low_complexity 1 91 0 267 284 11 17 chrX 506464 506640 -176467500 + (TA)n Simple_repeat Simple_repeat 2 176 0 31 68 0 0 chrX 506659 506718 -176467422 + AT_rich Low_complexity Low_complexity 1 59 0 384 227 34 17 chrX 506745 506831 -176467309 + (TA)n Simple_repeat Simple_repeat 1 84 -95 2289 105 10 0 chrX 506831 507125 -176467015 + AluSp SINE Alu 1 297 -16 384 227 34 17 chrX 507125 507214 -176466926 + (TA)n Simple_repeat Simple_repeat 84 179 0 266 286 19 0 chrX 507242 507403 -176466737 + (TA)n Simple_repeat Simple_repeat 2 165 0 495 185 82 86 chrX 507456 507638 -176466502 - MER33 DNA MER1_type -2353 232 50 2277 187 9 12 chrX 507638 508065 -176466075 + MSTB LTR MaLR 1 426 0 495 185 82 86 chrX 508065 508114 -176466026 - MER33 DNA MER1_type -2535 50 2 2415 77 0 0 chrX 508503 508800 -176465340 + AluY SINE Alu 1 297 -14 625 161 100 0 chrX 508884 509014 -176465126 - L1MC3 LINE L1 -195 7590 7448 306 121 35 17 chrX 509041 509099 -176465041 - MSTB1 LTR MaLR -43 389 331 720 114 9 0 chrX 509193 509298 -176464842 - MSTB1 LTR MaLR 0 432 327 1551 180 200 130 chrX 509300 509555 -176464585 - L1MC3 LINE L1 -340 7445 7209 240 284 12 25 chrX 509555 509636 -176464504 - MLT1F1 LTR MaLR -453 114 35 1551 180 200 130 chrX 509636 509985 -176464155 - L1MC3 LINE L1 -576 7209 6713 1266 233 38 24 chrX 510019 510311 -176463829 + AluJo SINE Alu 1 296 -6 471 214 0 0 chrX 510314 510398 -176463742 + AluJo/FRAM SINE Alu 207 290 -22 243 88 0 0 chrX 511922 511956 -176462184 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2286 75 0 4 chrX 511956 512237 -176461903 - AluSx SINE Alu -32 280 1 2257 84 3 32 chrX 512662 512972 -176461168 - AluSx SINE Alu -7 305 5 1568 174 0 30 chrX 513219 513350 -176460790 + AluJb SINE Alu 6 126 -186 2220 111 0 7 chrX 513350 513657 -176460483 + AluSx SINE Alu 2 306 -6 1568 174 0 30 chrX 513657 513795 -176460345 + AluJb SINE Alu 126 267 -45 230 326 22 58 chrX 514081 514219 -176459921 + MIR SINE MIR 34 166 -96 2164 113 0 35 chrX 514264 514582 -176459558 + AluSx SINE Alu 1 307 -5 2748 86 23 16 chrX 514968 515354 -176458786 + MLT2A1 LTR ERVL 1 389 -55 192 77 0 0 chrX 515354 515380 -176458760 + (TA)n Simple_repeat Simple_repeat 1 26 0 1629 164 32 11 chrX 515750 516061 -176458079 - AluJo SINE Alu 0 317 1 2316 95 3 0 chrX 516276 516572 -176457568 + AluSx SINE Alu 1 297 -15 210 91 0 0 chrX 516588 516621 -176457519 + (CA)n Simple_repeat Simple_repeat 2 34 0 183 258 61 0 chrX 517132 517198 -176456942 - MIR SINE MIR -117 145 76 496 248 10 2 chrX 517330 517744 -176456396 + (TCCA)n Simple_repeat Simple_repeat 1 417 0 350 281 0 6 chrX 517768 517939 -176456201 + (TCCA)n Simple_repeat Simple_repeat 4 173 0 563 227 8 0 chrX 519075 519203 -176454937 - AluJb SINE Alu -7 305 177 627 144 8 23 chrX 519230 519362 -176454778 + CT-rich Low_complexity Low_complexity 3 132 0 884 145 0 0 chrX 519364 519495 -176454645 - FLAM_C SINE Alu -2 131 1 283 287 53 0 chrX 519894 519988 -176454152 + MER5A DNA MER1_type 11 109 -80 2285 105 0 0 chrX 521072 521366 -176452774 + AluSp SINE Alu 2 295 -18 208 361 17 17 chrX 521671 521790 -176452350 - MIR SINE MIR -70 138 20 264 174 43 0 chrX 521843 521889 -176452251 + MLT1D LTR MaLR 1 48 -457 334 125 42 0 chrX 521892 521940 -176452200 + MLT1D LTR MaLR 1 50 -455 298 106 64 0 chrX 521941 521988 -176452152 + MLT1D LTR MaLR 1 50 -455 360 102 20 0 chrX 521989 522038 -176452102 + MLT1D LTR MaLR 1 50 -455 312 143 20 0 chrX 522039 522088 -176452052 + MLT1D LTR MaLR 1 50 -455 325 122 20 0 chrX 522089 522138 -176452002 + MLT1D LTR MaLR 1 50 -455 349 102 20 0 chrX 522139 522188 -176451952 + MLT1D LTR MaLR 1 50 -455 336 104 42 0 chrX 522189 522237 -176451903 + MLT1D LTR MaLR 1 50 -455 2158 198 26 40 chrX 522238 522746 -176451394 + MLT1D LTR MaLR 1 622 -4 2845 62 3 3 chrX 522772 523127 -176451013 + THE1A LTR MaLR 1 355 0 3100 109 2 5 chrX 523132 523574 -176450566 + MER41A LTR ERV1 1 441 -113 2312 85 3 0 chrX 523574 523868 -176450272 - AluSc SINE Alu -9 300 6 2205 119 0 10 chrX 524177 524489 -176449651 + AluSx SINE Alu 4 312 0 289 279 45 52 chrX 524791 524945 -176449195 - MER103 DNA DNA 0 166 14 1868 161 3 10 chrX 525237 525542 -176448598 - AluJb SINE Alu -9 303 1 1784 115 4 4 chrX 525677 525929 -176448211 + AluSq SINE Alu 1 252 -61 2049 116 20 0 chrX 527555 527847 -176446293 + AluSx SINE Alu 1 298 -14 2154 105 0 10 chrX 527857 528151 -176445989 + AluSx SINE Alu 7 297 -15 2382 95 0 0 chrX 528727 529023 -176445117 + AluSg SINE Alu 1 296 -14 422 291 10 10 chrX 529023 529126 -176445014 - MLT1E LTR MaLR -489 104 2 1993 139 3 3 chrX 529365 529666 -176444474 - AluSx SINE Alu -11 301 1 467 315 12 6 chrX 531067 531232 -176442908 - MLT1G1 LTR MaLR -207 388 223 360 169 0 0 chrX 531444 531509 -176442631 + Alu SINE Alu 234 298 -3 236 308 0 0 chrX 531509 531574 -176442566 - L2 LINE L2 -18 3295 3231 204 267 0 0 chrX 531609 531669 -176442471 + (TG)n Simple_repeat Simple_repeat 1 60 0 1991 141 0 33 chrX 531718 532017 -176442123 - AluJo SINE Alu -23 289 1 2282 108 3 0 chrX 532088 532384 -176441756 - AluSx SINE Alu -15 297 1 2346 103 0 10 chrX 532721 533023 -176441117 - AluSg SINE Alu -11 299 1 1844 162 8 22 chrX 533164 533507 -176440633 - L1PA16 LINE L1 0 6166 5827 2160 131 3 3 chrX 533507 533813 -176440327 - AluSc SINE Alu -3 306 1 1844 162 8 22 chrX 533813 533827 -176440313 - L1PA16 LINE L1 -339 5827 5814 1023 97 28 7 chrX 533827 533972 -176440168 - AluSc SINE Alu -30 279 132 1173 132 0 16 chrX 533972 534154 -176439986 - AluSg/x SINE Alu 0 310 132 1110 430 35 3 chrX 534154 534438 -176439702 - AluSx SINE Alu -9 293 1 2168 104 11 0 chrX 534701 534988 -176439152 + AluSq SINE Alu 1 290 -23 261 0 0 0 chrX 535220 535249 -176438891 + (T)n Simple_repeat Simple_repeat 1 29 0 1909 127 9 72 chrX 535361 535503 -176438637 + AluJb SINE Alu 1 150 -162 2108 135 6 6 chrX 535503 535815 -176438325 + AluSx SINE Alu 1 312 0 1909 127 9 72 chrX 535815 536004 -176438136 + AluJb SINE Alu 150 311 -1 2251 91 0 10 chrX 536080 536378 -176437762 + AluSx SINE Alu 1 295 -17 741 161 8 16 chrX 536462 536586 -176437554 + AluJo SINE Alu 15 137 -175 1565 197 4 14 chrX 536588 536867 -176437273 + AluJo SINE Alu 5 280 -32 366 80 0 0 chrX 536869 536919 -176437221 + (TAA)n Simple_repeat Simple_repeat 1 50 0 230 75 0 25 chrX 536920 536960 -176437180 + MADE1 DNA Mariner 5 43 -37 2385 92 0 13 chrX 537154 537468 -176436672 - AluSg SINE Alu 0 310 1 1800 178 0 3 chrX 537577 537899 -176436241 - AluJo SINE Alu 0 321 1 1244 211 42 131 chrX 537913 538514 -176435626 - L1MD2 LINE L1 0 6359 5813 294 287 49 16 chrX 538564 538686 -176435454 - L1MD2 LINE L1 -2083 5725 5600 1783 161 3 20 chrX 538689 538994 -176435146 - AluJo SINE Alu -12 300 1 324 299 125 7 chrX 539121 539265 -176434875 - L1MD2 LINE L1 -2329 5479 5319 2492 54 0 14 chrX 539303 539599 -176434541 + AluY SINE Alu 1 292 -19 2750 96 13 0 chrX 539609 539986 -176434154 + L1PA8 LINE L1 5787 6168 -4 626 297 138 47 chrX 539986 540231 -176433909 - L1MC/D LINE L1 -770 5376 5155 1587 163 36 33 chrX 540231 540537 -176433603 - AluJo SINE Alu -5 307 1 626 297 138 47 chrX 540537 541109 -176433031 - L1MC/D LINE L1 -991 5155 4549 26 0 0 0 chrX 541151 541177 -176432963 + AT_rich Low_complexity Low_complexity 1 26 0 2295 82 0 10 chrX 541177 541470 -176432670 - AluSg SINE Alu -20 290 1 2167 161 21 0 chrX 541470 541848 -176432292 - L1PA16 LINE L1 -11 6155 5770 1000 139 6 6 chrX 541855 542020 -176432120 + L1PA16 LINE L1 5608 5772 -394 2660 55 0 0 chrX 542028 542337 -176431803 - AluY SINE Alu -2 309 1 1825 155 7 39 chrX 542340 542650 -176431490 - AluJb SINE Alu -12 300 1 363 272 43 27 chrX 542652 542836 -176431304 - LTR16B LTR ERVL -8 456 270 472 145 0 0 chrX 543106 543182 -176430958 - AluJ/FRAM SINE Alu -14 298 223 638 327 53 56 chrX 543283 543643 -176430497 - L1MC/D LINE L1 -1675 4471 4111 1685 157 3 28 chrX 543643 543929 -176430211 + AluJo SINE Alu 18 296 -16 638 327 53 56 chrX 543929 544036 -176430104 - L1MC/D LINE L1 -2035 4111 4005 219 170 0 0 chrX 544041 544088 -176430052 + (CA)n Simple_repeat Simple_repeat 2 48 0 341 96 0 82 chrX 544463 544536 -176429604 - MLT1A1 LTR MaLR -276 89 23 4032 52 4 4 chrX 544597 545097 -176429043 - L1PA7 LINE L1 -1 6153 5654 2171 197 5 2 chrX 545115 545531 -176428609 - L1PB4 LINE L1 -2 6154 5738 1040 177 8 6 chrX 546515 546790 -176427350 + GA-rich Low_complexity Low_complexity 1 457 -76 1040 128 6 0 chrX 546790 546969 -176427171 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1040 177 8 6 chrX 546969 547047 -176427093 + GA-rich Low_complexity Low_complexity 457 533 0 2414 221 55 2 chrX 547165 547694 -176426446 + MER74A LTR ERVL 1 557 -1 2021 150 0 13 chrX 548209 548522 -176425618 - AluSx SINE Alu -2 310 2 650 222 7 22 chrX 548763 549040 -176425100 - MLT1B LTR MaLR -2 465 170 1856 161 53 9 chrX 549044 549418 -176424722 - MLT1B LTR MaLR 0 396 1 823 192 7 7 chrX 549783 549929 -176424211 - FRAM SINE Alu -16 150 5 1142 139 6 0 chrX 549937 550110 -176424030 - AluSg SINE Alu 0 312 139 1203 83 0 0 chrX 550230 550375 -176423765 - AluSg SINE Alu -165 145 1 230 67 0 0 chrX 550390 550420 -176423720 - L1M LINE L1 -915 5397 5368 23 0 0 0 chrX 550464 550487 -176423653 + AT_rich Low_complexity Low_complexity 1 23 0 1740 178 30 0 chrX 550565 550863 -176423277 - AluJb SINE Alu -5 307 1 2253 88 0 3 chrX 550895 551180 -176422960 - AluSg SINE Alu -26 284 1 2539 185 15 2 chrX 551503 551984 -176422156 - LTR15 LTR ERV1 -6 487 1 432 333 46 35 chrX 552067 552241 -176421899 + MER5A DNA MER1_type 1 176 -13 2345 100 3 3 chrX 552512 552813 -176421327 - AluSq SINE Alu -12 301 1 1705 118 30 43 chrX 553055 553206 -176420934 + L1MA3 LINE L1 5988 6135 -170 2313 103 17 0 chrX 553206 553507 -176420633 + AluSx SINE Alu 2 307 -5 1705 118 30 43 chrX 553507 553659 -176420481 + L1MA3 LINE L1 6135 6287 -18 217 321 0 29 chrX 555564 555701 -176418439 + (TTAGG)n Simple_repeat Simple_repeat 3 135 0 206 264 0 35 chrX 555809 555896 -176418244 + (TTAAG)n Simple_repeat Simple_repeat 4 87 0 * 209 248 57 19 chrX 555836 555941 -176418199 + (AGTTG)n Simple_repeat Simple_repeat 1 109 0 276 314 0 31 chrX 556186 556345 -176417795 + (TTAGG)n Simple_repeat Simple_repeat 2 155 0 2825 176 16 69 chrX 556539 556892 -176417248 - L1MA8 LINE L1 -3 6288 5993 2442 104 0 0 chrX 556892 557201 -176416939 - AluSc SINE Alu 0 309 1 2825 176 16 69 chrX 557201 557589 -176416551 - L1MA8 LINE L1 -298 5993 5586 849 142 0 0 chrX 557732 557852 -176416288 + AluSq/x SINE Alu 1 120 -192 1098 133 0 0 chrX 558350 558538 -176415602 - AluSg/x SINE Alu 0 319 132 2132 114 0 41 chrX 558539 558854 -176415286 - AluSg SINE Alu -8 302 1 2055 116 3 7 chrX 560085 560401 -176413739 + AluSx SINE Alu 1 315 0 2018 96 0 3 chrX 560559 560841 -176413299 + L1PA7 LINE L1 5874 6154 0 1694 91 0 0 chrX 561742 561951 -176412189 + AluSg SINE Alu 1 209 -101 277 102 0 0 chrX 561953 562002 -176412138 + AluSg SINE Alu 260 308 0 21 0 0 0 chrX 562155 562176 -176411964 + AT_rich Low_complexity Low_complexity 1 21 0 3306 190 9 31 chrX 562176 562414 -176411726 - L1PB4 LINE L1 -1 6155 5913 2352 203 54 30 chrX 562414 562911 -176411229 + LTR22 LTR ERVK 1 509 0 3306 190 9 31 chrX 562911 563351 -176410789 - L1PB4 LINE L1 -243 5913 5492 2212 94 3 3 chrX 563381 563669 -176410471 + AluSx SINE Alu 7 294 -18 1586 129 40 66 chrX 563673 563810 -176410330 - THE1B LTR MaLR -69 295 156 2266 97 3 3 chrX 563810 564134 -176410006 + AluSq SINE Alu 2 313 0 1586 129 40 66 chrX 564134 564299 -176409841 - THE1B LTR MaLR -208 156 1 482 217 17 26 chrX 564301 564416 -176409724 + MLT1E2 LTR MaLR 495 608 -18 182 206 29 0 chrX 564908 564942 -176409198 + MIR SINE MIR 118 152 -56 2366 92 3 0 chrX 564959 565252 -176408888 - AluSp SINE Alu -17 296 3 32 0 0 0 chrX 565262 565294 -176408846 + AT_rich Low_complexity Low_complexity 1 32 0 694 181 9 0 chrX 565294 565410 -176408730 - FLAM_C SINE Alu -25 118 2 218 200 40 0 chrX 565534 565584 -176408556 + MIR SINE MIR 101 152 -56 1894 215 65 45 chrX 566071 566189 -176407951 - MER41D LTR ERV1 -11 546 432 2247 136 0 0 chrX 566189 566499 -176407641 + AluSx SINE Alu 2 311 -1 1894 215 65 45 chrX 566499 566915 -176407225 - MER41D LTR ERV1 -125 432 1 27 83 0 28 chrX 568678 568787 -176405353 + GC_rich Low_complexity Low_complexity 1 106 0 23 0 0 0 chrX 568917 568940 -176405200 + AT_rich Low_complexity Low_complexity 1 23 0 1295 164 9 5 chrX 568986 569200 -176404940 - AluJo SINE Alu -94 218 4 1232 203 114 7 chrX 569207 569478 -176404662 - AluJo SINE Alu -2 300 1 548 282 96 47 chrX 569487 569873 -176404267 - Charlie1b DNA MER1_type -115 408 4 467 193 47 94 chrX 571540 571555 -176402585 - Charlie1 DNA MER1_type 0 2761 2747 2172 104 10 0 chrX 571555 571852 -176402288 - AluSp SINE Alu -13 300 1 467 193 47 94 chrX 571852 572049 -176402091 - Charlie1 DNA MER1_type -14 2747 2559 62 52 0 0 chrX 572053 572150 -176401990 + AT_rich Low_complexity Low_complexity 1 97 0 837 137 75 176 chrX 572171 572324 -176401816 - L1MA7 LINE L1 -3 6288 6121 868 100 0 0 chrX 572324 572444 -176401696 - L1PB1 LINE L1 -1 6150 6031 837 137 75 176 chrX 572444 572467 -176401673 - L1MA7 LINE L1 -170 6121 6097 2218 125 3 3 chrX 572467 572779 -176401361 + AluSx SINE Alu 1 312 0 837 137 75 176 chrX 572779 572907 -176401233 - L1MA7 LINE L1 -194 6097 6014 485 275 23 41 chrX 572915 573133 -176401007 - Charlie1 DNA MER1_type -197 2564 2351 198 71 0 0 chrX 573585 573613 -176400527 + (TAA)n Simple_repeat Simple_repeat 2 29 0 231 146 0 0 chrX 573656 573697 -176400443 + (TAA)n Simple_repeat Simple_repeat 2 42 0 198 71 0 0 chrX 573739 573767 -176400373 + (TAA)n Simple_repeat Simple_repeat 2 29 0 279 79 0 0 chrX 573812 573850 -176400290 + (TAA)n Simple_repeat Simple_repeat 1 38 0 216 97 0 0 chrX 573893 573924 -176400216 + (TAA)n Simple_repeat Simple_repeat 2 32 0 215 158 0 0 chrX 573969 574007 -176400133 + (TAA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 574233 574261 -176399879 + AT_rich Low_complexity Low_complexity 1 28 0 2233 110 3 10 chrX 574521 574829 -176399311 - AluSq SINE Alu -5 308 3 203 184 0 0 chrX 574876 574914 -176399226 + (TAA)n Simple_repeat Simple_repeat 1 38 0 201 39 0 0 chrX 574959 574985 -176399155 + (TAA)n Simple_repeat Simple_repeat 3 28 0 285 29 0 0 chrX 575030 575064 -176399076 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1036 247 136 19 chrX 575634 576067 -176398073 - MLT1D LTR MaLR -19 486 3 612 231 87 63 chrX 576079 576365 -176397775 - MLT1C LTR MaLR -122 345 53 2491 86 0 0 chrX 577149 577452 -176396688 + AluSx SINE Alu 1 303 -9 2080 97 31 3 chrX 580044 580333 -176393807 + AluSx SINE Alu 1 297 -15 1701 107 4 27 chrX 580889 581150 -176392990 + AluSx SINE Alu 42 296 -16 21 0 0 0 chrX 582173 582194 -176391946 + AT_rich Low_complexity Low_complexity 1 21 0 300 283 0 35 chrX 582454 582567 -176391573 + CT-rich Low_complexity Low_complexity 3 111 0 729 115 0 68 chrX 582577 582769 -176391371 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 865 141 0 22 chrX 582806 582990 -176391150 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 27 0 0 0 chrX 583311 583338 -176390802 + AT_rich Low_complexity Low_complexity 1 27 0 303 267 0 30 chrX 583355 583456 -176390684 + G-rich Low_complexity Low_complexity 2 99 0 423 185 8 25 chrX 583464 583583 -176390557 + CT-rich Low_complexity Low_complexity 2 118 0 379 235 10 20 chrX 584681 584779 -176389361 - MER58B DNA MER1_type -20 321 225 2145 94 11 0 chrX 584780 585056 -176389084 + AluSq SINE Alu 2 280 -33 230 191 24 71 chrX 585082 585166 -176388974 - MER58B DNA MER1_type -183 158 79 180 0 0 0 chrX 585242 585262 -176388878 + (T)n Simple_repeat Simple_repeat 1 20 0 1755 151 0 31 chrX 585481 585800 -176388340 + AluJo SINE Alu 1 310 0 911 207 0 0 chrX 585800 585964 -176388176 + AluJb SINE Alu 135 298 -14 1490 176 22 38 chrX 586487 586623 -176387517 + AluJo SINE Alu 1 138 -174 1749 184 3 7 chrX 586623 586922 -176387218 + AluJo SINE Alu 1 298 -14 1490 176 22 38 chrX 586922 587098 -176387042 + AluJo SINE Alu 138 308 -4 2238 106 7 0 chrX 587375 587668 -176386472 - AluSq SINE Alu -18 295 1 419 206 0 20 chrX 587848 587950 -176386190 - L1MA7 LINE L1 -8 6283 6184 2081 207 43 62 chrX 588060 588224 -176385916 - L1MA8 LINE L1 -107 6184 6018 1715 175 14 7 chrX 588224 588516 -176385624 - AluJo SINE Alu -18 294 1 744 196 0 0 chrX 588519 588652 -176385488 - AluJo/FLAM SINE Alu -169 133 1 2081 207 43 62 chrX 588652 589059 -176385081 - L1MA8 LINE L1 -275 6016 5620 2280 107 0 0 chrX 591662 591962 -176382178 - AluSx SINE Alu -12 300 1 2026 138 23 0 chrX 592523 592828 -176381312 - AluSq SINE Alu -1 312 1 2218 151 10 29 chrX 592831 593168 -176380972 - L1PA15 LINE L1 -6 6159 5830 2200 115 3 0 chrX 593168 593463 -176380677 - AluSp SINE Alu -17 296 1 2218 151 10 29 chrX 593463 593535 -176380605 - L1PA15 LINE L1 -335 5830 5758 2295 101 0 0 chrX 593753 594049 -176380091 - AluSq SINE Alu -17 296 1 529 168 0 0 chrX 594233 594340 -176379800 - L1MA7 LINE L1 -1 6290 6184 1381 194 97 119 chrX 594411 594621 -176379519 - L1MA7 LINE L1 -88 6203 5990 1588 190 14 0 chrX 594621 594905 -176379235 - AluJo SINE Alu -24 288 1 739 203 0 0 chrX 594910 595043 -176379097 - FLAM_C SINE Alu 0 133 1 1381 194 97 119 chrX 595043 595423 -176378717 - L1MA7 LINE L1 -305 5986 5620 988 106 0 0 chrX 597045 597177 -176376963 - AluSg/x SINE Alu -11 301 170 1551 202 57 9 chrX 597178 597509 -176376631 - MLT1A1 LTR MaLR -15 350 4 21 36 0 0 chrX 597553 597581 -176376559 + AT_rich Low_complexity Low_complexity 1 28 0 1012 118 0 0 chrX 597822 597958 -176376182 - AluSp/q SINE Alu -18 295 160 198 0 0 0 chrX 598124 598146 -176375994 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1302 174 126 7 chrX 598364 598634 -176375506 + AluJo SINE Alu 1 302 -10 841 167 0 32 chrX 598634 598790 -176375350 + AluJo/FRAM SINE Alu 134 284 -28 2478 81 0 0 chrX 599092 599390 -176374750 - AluSq SINE Alu -15 298 1 402 192 29 19 chrX 599576 599680 -176374460 - L1MA7 LINE L1 -3 6288 6184 1918 193 52 64 chrX 599789 599953 -176374187 - L1MA8 LINE L1 -100 6191 6027 1685 181 24 0 chrX 599953 600241 -176373899 - AluJo SINE Alu -17 295 1 684 226 0 0 chrX 600251 600384 -176373756 - FLAM_C SINE Alu 0 133 1 1918 193 52 64 chrX 600384 600787 -176373353 - L1MA8 LINE L1 -273 6018 5620 236 177 0 48 chrX 602754 602816 -176371324 - MLT1A1 LTR MaLR -306 59 1 2365 92 0 0 chrX 603127 603422 -176370718 - AluSq SINE Alu -18 295 1 1604 174 3 34 chrX 603426 603748 -176370392 - AluJo SINE Alu 0 312 1 2621 50 3 0 chrX 604269 604572 -176369568 - AluY SINE Alu -7 304 1 5148 24 0 0 chrX 605093 605677 -176368463 - L1PA4 LINE L1 -7 6148 5565 1127 206 58 21 chrX 605677 605968 -176368172 - MLT1A1 LTR MaLR -54 311 10 209 301 23 40 chrX 607429 607605 -176366535 + (CAGGT)n Simple_repeat Simple_repeat 4 176 0 33 0 0 0 chrX 608185 608218 -176365922 + AT_rich Low_complexity Low_complexity 1 33 0 551 260 83 0 chrX 608418 608599 -176365541 - MER58A DNA MER1_type -2 222 27 285 324 0 32 chrX 609312 609497 -176364643 + (TTAGG)n Simple_repeat Simple_repeat 2 180 0 941 55 0 0 chrX 609753 609862 -176364278 - AluSq/x SINE Alu -203 109 1 1311 178 12 42 chrX 609864 610123 -176364017 + MLT1A1 LTR MaLR 31 318 -78 1694 95 5 0 chrX 610123 610345 -176363795 + AluSp SINE Alu 87 309 -4 207 0 0 0 chrX 610494 610517 -176363623 + (A)n Simple_repeat Simple_repeat 1 23 0 258 237 0 0 chrX 611127 611203 -176362937 + (CAT)n Simple_repeat Simple_repeat 2 77 0 1678 181 7 17 chrX 612020 612318 -176361822 + AluJb SINE Alu 1 295 -17 1041 76 0 7 chrX 612498 612642 -176361498 - L1PA8 LINE L1 -341 5831 5689 1665 196 20 38 chrX 612653 613051 -176361089 - L1MB1 LINE L1 -1 6167 5777 2164 109 0 16 chrX 613051 613354 -176360786 - AluSx SINE Alu -14 298 1 2382 64 24 3 chrX 613361 613658 -176360482 - AluY SINE Alu -8 303 1 2071 110 23 17 chrX 613711 614011 -176360129 - AluSx SINE Alu -10 302 1 233 139 23 0 chrX 614017 614060 -176360080 - L1M2 LINE L1 -467 5824 5781 1849 129 0 0 chrX 614160 614415 -176359725 - AluSx SINE Alu -54 258 4 1703 118 22 4 chrX 614426 614698 -176359442 + L1PB1 LINE L1 5867 6143 -8 1189 144 0 42 chrX 614738 614953 -176359187 - Tigger2a DNA MER2_type -228 206 1 977 248 44 50 chrX 614954 615297 -176358843 - MLT1A2 LTR MaLR -33 341 1 1549 109 0 0 chrX 616089 616290 -176357850 + AluSq SINE Alu 1 201 -112 947 55 87 0 chrX 616410 616537 -176357603 - MER85 DNA T2_type 0 139 2 566 233 10 79 chrX 616552 616675 -176357465 - MER4C LTR ERV1 -2 463 333 2418 81 0 0 chrX 616675 616973 -176357167 - AluSx SINE Alu -14 298 1 2211 111 3 3 chrX 616973 617278 -176356862 - AluSx SINE Alu -6 306 1 566 233 10 79 chrX 617278 617355 -176356785 - MER4C LTR ERV1 -130 335 276 897 148 7 187 chrX 617363 617722 -176356418 - MER4A LTR ERV1 -177 522 139 1658 129 53 76 chrX 617789 618091 -176356049 + AluJb SINE Alu 1 295 -17 3307 129 8 2 chrX 618130 618648 -176355492 + MER41B LTR ERV1 113 633 -2 1694 127 8 0 chrX 618776 619013 -176355127 + AluSq SINE Alu 62 300 -13 2069 131 3 0 chrX 619023 619320 -176354820 + AluSx SINE Alu 1 298 -14 1861 162 17 67 chrX 619509 619891 -176354249 + Tigger2a DNA MER2_type 2 365 -2343 2238 127 0 0 chrX 619891 620190 -176353950 + AluSq SINE Alu 1 299 -14 1861 162 17 67 chrX 620190 620209 -176353931 + Tigger2a DNA MER2_type 365 383 -51 697 189 6 6 chrX 620314 620494 -176353646 + (CAT)n Simple_repeat Simple_repeat 1 180 0 806 192 6 0 chrX 620511 620839 -176353301 + (CAT)n Simple_repeat Simple_repeat 1 330 0 231 354 98 32 chrX 621259 621544 -176352596 - L2 LINE L2 -616 2698 2395 1346 66 11 0 chrX 621974 622157 -176351983 + L1PA2 LINE L1 5932 6116 -39 2175 158 71 76 chrX 623125 623353 -176350787 + LTR39 LTR ERV1 1 229 -554 2857 56 26 3 chrX 623353 623730 -176350410 + L1PA7 LINE L1 5767 6152 -2 2175 158 71 76 chrX 623730 624013 -176350127 + LTR39 LTR ERV1 229 511 -272 2278 99 0 17 chrX 624013 624315 -176349825 - AluSq SINE Alu -16 297 1 2175 158 71 76 chrX 624315 624365 -176349775 + LTR39 LTR ERV1 511 560 -223 741 121 17 0 chrX 624465 624581 -176349559 + MLT2A1 LTR ERVL 327 444 0 492 284 138 53 chrX 624766 625048 -176349092 + L1M4 LINE L1 2922 3227 -2919 2232 103 4 0 chrX 625370 625651 -176348489 + AluSx SINE Alu 1 282 -30 200 91 0 30 chrX 625651 625684 -176348456 + (TC)n Simple_repeat Simple_repeat 1 32 0 324 0 0 0 chrX 625691 625727 -176348413 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 677 273 19 19 chrX 625779 625988 -176348152 + MER58A DNA MER1_type 1 209 -15 244 321 176 0 chrX 626345 626510 -176347630 + MER117 DNA MER1_type 4 197 0 240 111 0 0 chrX 626661 626697 -176347443 + (ATG)n Simple_repeat Simple_repeat 1 36 0 372 94 0 0 chrX 626726 626779 -176347361 + (CA)n Simple_repeat Simple_repeat 2 54 0 933 91 0 8 chrX 626785 626906 -176347234 - AluSc SINE Alu -27 282 163 1068 96 0 0 chrX 627006 627141 -176346999 - AluSq SINE Alu -54 259 125 188 365 0 21 chrX 627191 627287 -176346853 - MIR SINE MIR -140 122 29 1473 224 0 20 chrX 627529 627824 -176346316 + AluJo SINE Alu 1 289 -23 264 77 0 0 chrX 627912 627951 -176346189 + LTR9 LTR ERV1 1 39 -573 1096 170 0 6 chrX 627951 628122 -176346018 + AluJb SINE Alu 129 298 -14 526 31 0 0 chrX 628740 628805 -176345335 + LTR9 LTR ERV1 1 65 -547 1507 95 22 56 chrX 628805 629037 -176345103 - AluSg/x SINE Alu -1 309 86 399 41 0 0 chrX 629140 629189 -176344951 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 1708 167 14 3 chrX 629693 629986 -176344154 - AluJo SINE Alu -3 309 14 2405 106 0 0 chrX 630020 630332 -176343808 - AluSp SINE Alu -1 312 1 778 129 57 0 chrX 630335 630459 -176343681 - AluJo SINE Alu -168 144 14 704 207 0 0 chrX 630555 630671 -176343469 + FLAM_A SINE Alu 1 116 -17 2131 122 0 22 chrX 632056 632375 -176341765 - AluSx SINE Alu 0 312 1 1044 101 14 0 chrX 632375 632514 -176341626 - AluSq/x SINE Alu -172 141 1 2381 69 3 0 chrX 632752 633042 -176341098 - AluSx SINE Alu -21 291 1 695 295 74 44 chrX 633091 633430 -176340710 + MER92B LTR ERV1 27 375 -261 2019 158 27 21 chrX 633933 634307 -176339833 - MER1A DNA MER1_type -61 468 93 2523 61 0 3 chrX 634498 634793 -176339347 - AluSc SINE Alu -15 294 1 337 295 0 9 chrX 634981 635086 -176339054 + MLT1C LTR MaLR 360 463 -4 1177 178 73 8 chrX 635107 635354 -176338786 + Tigger2a DNA MER2_type 1 263 -171 311 65 0 0 chrX 635364 635410 -176338730 + Tigger2a DNA MER2_type 232 277 -167 2264 119 0 3 chrX 635415 635727 -176338413 - AluSp SINE Alu -2 311 1 493 49 0 0 chrX 635787 635848 -176338292 + MER1A DNA MER1_type 261 321 -208 443 212 169 0 chrX 635828 635946 -176338194 + Tigger2a DNA MER2_type 292 429 -5 * 1877 168 0 43 chrX 636065 636272 -176337868 + L1PA15 LINE L1 5831 6019 -146 2187 100 0 0 chrX 636272 636552 -176337588 + AluSg SINE Alu 1 280 -30 1877 168 0 43 chrX 636552 636689 -176337451 + L1PA15 LINE L1 6019 6160 -5 385 117 48 58 chrX 636690 636793 -176337347 + Tigger3(Golem) DNA MER2_type 2425 2526 -503 1699 169 3 0 chrX 637932 638234 -176335906 - Tigger1 DNA MER2_type -165 2253 1951 2508 89 0 6 chrX 638235 638550 -176335590 + AluSq SINE Alu 1 313 0 714 213 0 0 chrX 638559 638700 -176335440 + Tigger1 DNA MER2_type 1538 1678 -740 329 115 19 0 chrX 638801 638853 -176335287 - Alu SINE Alu -250 53 1 376 217 12 0 chrX 638870 639038 -176335102 + CT-rich Low_complexity Low_complexity 1 170 0 22 0 0 0 chrX 640015 640037 -176334103 + AT_rich Low_complexity Low_complexity 1 22 0 1344 138 4 9 chrX 640298 640523 -176333617 - MLT1B LTR MaLR 0 390 167 1004 165 10 16 chrX 640529 640723 -176333417 - MLT1B LTR MaLR 0 390 198 274 317 0 0 chrX 641151 641255 -176332885 + C-rich Low_complexity Low_complexity 4 107 0 2237 94 13 3 chrX 642097 642395 -176331745 - AluSp SINE Alu 0 313 13 1405 270 0 104 chrX 642986 643323 -176330817 - AluSx SINE Alu 0 302 1 2403 99 0 0 chrX 643627 643930 -176330210 - AluSx SINE Alu -9 303 1 2366 101 7 0 chrX 644425 644733 -176329407 - AluSg SINE Alu 0 310 1 1639 186 7 14 chrX 645001 645297 -176328843 + AluJo SINE Alu 11 304 -8 226 304 25 0 chrX 645475 645554 -176328586 - MLT1B LTR MaLR -286 181 101 183 204 0 0 chrX 645891 645935 -176328205 + (CA)n Simple_repeat Simple_repeat 2 45 0 1178 78 0 20 chrX 646251 646404 -176327736 + AluSg SINE Alu 1 150 -160 685 259 70 5 chrX 646407 646592 -176327548 - MIR SINE MIR -18 244 48 1044 83 0 0 chrX 646669 646802 -176327338 + AluY SINE Alu 167 299 -12 4970 108 13 18 chrX 646802 647231 -176326909 + L1PA13 LINE L1 5359 5784 -379 1876 99 48 61 chrX 647231 647543 -176326597 + AluSg SINE Alu 1 308 -2 4970 108 13 18 chrX 647543 647903 -176326237 + L1PA13 LINE L1 5784 6144 -19 1049 170 39 5 chrX 648146 648352 -176325788 - L1M2 LINE L1 -506 5785 5573 2163 112 30 0 chrX 648440 648744 -176325396 + AluSq SINE Alu 1 313 0 2018 118 59 42 chrX 649699 649729 -176324411 + THE1B LTR MaLR 3 31 -333 2029 133 17 0 chrX 649729 650022 -176324118 - AluSq SINE Alu -15 298 1 2018 118 59 42 chrX 650022 650346 -176323794 + THE1B LTR MaLR 31 363 -1 3051 62 10 20 chrX 650387 650788 -176323352 + L1PA7 LINE L1 5758 6154 0 1340 212 0 35 chrX 651445 651761 -176322379 - MLT2D LTR ERVL 0 414 110 932 147 0 51 chrX 651761 651917 -176322223 - AluSp/q SINE Alu -12 301 154 443 208 31 6 chrX 652064 652223 -176321917 + GA-rich Low_complexity Low_complexity 1 163 0 1615 174 16 45 chrX 652947 653258 -176320882 + AluJo SINE Alu 1 302 -10 333 196 78 0 chrX 653736 653889 -176320251 + (TA)n Simple_repeat Simple_repeat 1 165 0 40 79 0 0 chrX 653916 654005 -176320135 + AT_rich Low_complexity Low_complexity 1 89 0 354 145 90 18 chrX 654056 654222 -176319918 + (TA)n Simple_repeat Simple_repeat 1 178 0 724 158 16 16 chrX 654237 654364 -176319776 - FLAM_A SINE Alu -6 136 10 2176 112 0 3 chrX 654785 655072 -176319068 - AluSx SINE Alu -8 304 19 1186 195 24 30 chrX 655518 655816 -176318324 + L1MB3 LINE L1 5596 5891 -292 2293 178 11 15 chrX 655816 656277 -176317863 + L1MB3 LINE L1 5723 6181 -2 2168 102 27 0 chrX 656296 656589 -176317551 + AluSp SINE Alu 1 301 -12 305 69 0 52 chrX 656589 656638 -176317502 + L1MB3 LINE L1 6134 6181 -2 2139 127 0 0 chrX 656653 656960 -176317180 + AluSx SINE Alu 1 307 -5 1795 162 30 20 chrX 657890 658193 -176315947 - AluJo SINE Alu -6 306 1 2286 112 0 6 chrX 658212 658525 -176315615 - AluY SINE Alu 0 311 1 2094 68 0 8 chrX 658840 659105 -176315035 + AluY SINE Alu 45 307 -4 1377 98 0 0 chrX 659105 659279 -176314861 + AluSg/x SINE Alu 124 297 -13 505 156 0 33 chrX 659476 659566 -176314574 - AluS SINE Alu -226 87 1 216 0 0 0 chrX 659995 660019 -176314121 + (TG)n Simple_repeat Simple_repeat 1 24 0 832 200 0 0 chrX 660516 660671 -176313469 + AluJo SINE Alu 1 155 -157 1685 166 7 7 chrX 660672 660962 -176313178 + AluJo SINE Alu 23 312 0 1068 109 0 0 chrX 661046 661184 -176312956 + AluSp/q SINE Alu 162 299 -14 2090 101 0 0 chrX 661308 661584 -176312556 + AluSx SINE Alu 37 312 0 1301 235 68 29 chrX 661608 662050 -176312090 + MLT1C LTR MaLR 7 465 -2 2324 91 0 3 chrX 663067 663364 -176310776 - AluSc SINE Alu -13 296 1 301 263 30 0 chrX 664629 664728 -176309412 - MLT2D LTR ERVL -310 104 3 29 70 0 0 chrX 664925 664982 -176309158 + AT_rich Low_complexity Low_complexity 1 57 0 297 0 0 0 chrX 664985 665018 -176309122 + (TA)n Simple_repeat Simple_repeat 1 33 0 3098 61 8 5 chrX 665020 665645 -176308495 - L1PA7 LINE L1 -2 6152 5392 3614 161 4 85 chrX 665760 666538 -176307602 - LTR62 LTR ERVK -4 715 1 1280 201 60 2 chrX 666543 666952 -176307188 - LTR19A LTR ERV1 0 486 1 2197 129 0 3 chrX 667786 668096 -176306044 + AluSq SINE Alu 1 309 -4 982 250 79 27 chrX 668281 668664 -176305476 + MLT1C LTR MaLR 45 454 -13 492 169 0 11 chrX 669450 669461 -176304679 + L1PB1 LINE L1 5782 5792 -359 219 88 0 0 chrX 669461 669495 -176304645 + (CA)n Simple_repeat Simple_repeat 2 35 0 492 169 0 11 chrX 669495 669572 -176304568 + L1PB1 LINE L1 5792 5869 -282 2390 66 0 3 chrX 669573 669875 -176304265 - L1PA7 LINE L1 -3 6151 5851 3321 172 33 33 chrX 669875 670487 -176303653 + L1PB2 LINE L1 5460 6095 -56 2202 120 0 10 chrX 670487 670787 -176303353 + AluSx SINE Alu 4 300 -12 3321 172 33 33 chrX 670787 670845 -176303295 + L1PB2 LINE L1 6094 6151 0 1929 212 22 7 chrX 671075 671481 -176302659 - MSTB1 LTR MaLR 0 432 21 2372 114 0 0 chrX 671564 671872 -176302268 - AluSx SINE Alu -4 308 1 281 232 24 19 chrX 672653 672760 -176301380 - MLT1C LTR MaLR -353 114 31 896 97 0 0 chrX 672818 672931 -176301209 + AluSg SINE Alu 1 113 -197 989 85 0 0 chrX 672931 673060 -176301080 + L1PA8 LINE L1 6034 6162 -10 421 217 0 23 chrX 673082 673207 -176300933 - MLT1D LTR MaLR -10 495 260 846 122 0 0 chrX 673207 673330 -176300810 + AluSp/q SINE Alu 190 312 -1 2087 104 10 23 chrX 673615 673922 -176300218 + AluSc SINE Alu 6 308 -1 562 75 54 21 chrX 674062 674155 -176299985 + MER4A LTR ERV1 3 98 -566 257 59 0 0 chrX 674167 674201 -176299939 + Alu SINE Alu 1 34 -274 192 182 23 23 chrX 874333 874377 -176099763 + MIR SINE MIR 219 262 0 211 329 98 0 chrX 874393 874475 -176099665 - L2 LINE L2 -36 3236 3147 476 337 52 95 chrX 874486 875002 -176099138 + L3 LINE CR1 832 1325 -252 26 0 0 0 chrX 875130 875156 -176098984 + AT_rich Low_complexity Low_complexity 1 26 0 387 324 92 0 chrX 875237 875410 -176098730 - L2 LINE L2 -5 3308 3120 342 263 123 45 chrX 875548 875727 -176098413 + MIR SINE MIR 21 213 -49 801 330 77 21 chrX 875779 876246 -176097894 + LTR33 LTR ERVL 29 521 0 258 337 0 10 chrX 876911 877009 -176097131 + ERVL LTR ERVL 835 931 -4833 619 314 29 54 chrX 877632 877947 -176096193 + ERVL LTR ERVL 1492 1798 -3966 374 311 79 18 chrX 877982 878146 -176095994 + ERVL LTR ERVL 2425 2598 -3166 349 232 112 90 chrX 878374 878593 -176095547 + MLT1J1 LTR MaLR 281 444 -2 606 311 100 37 chrX 878707 879138 -176095002 + L1MC4a LINE L1 5437 5894 -1914 216 67 0 0 chrX 879184 879214 -176094926 + (CA)n Simple_repeat Simple_repeat 1 30 0 748 216 21 53 chrX 880470 880660 -176093480 + MER5A DNA MER1_type 2 185 -4 353 322 54 21 chrX 881167 881409 -176092731 - L1ME LINE L1 -502 5664 5415 246 344 70 13 chrX 881461 881618 -176092522 - MIR SINE MIR -15 247 82 23 0 0 0 chrX 881964 881987 -176092153 + AT_rich Low_complexity Low_complexity 1 23 0 382 279 0 18 chrX 882052 882163 -176091977 - MIR SINE MIR -2 260 152 260 163 0 0 chrX 882163 882212 -176091928 + MER50 LTR ERV1 1 49 -685 864 80 0 0 chrX 882298 882410 -176091730 - AluSg/x SINE Alu -12 298 187 707 194 0 0 chrX 882413 882537 -176091603 + AluJo/FRAM SINE Alu 171 294 -18 25 0 0 0 chrX 882553 882578 -176091562 + AT_rich Low_complexity Low_complexity 1 25 0 6210 161 17 13 chrX 882613 882654 -176091486 + L1MA4 LINE L1 4135 4174 -2126 1665 140 75 7 chrX 882654 882946 -176091194 + AluSx SINE Alu 1 312 0 6210 161 17 13 chrX 882946 884719 -176089421 + L1MA4 LINE L1 4174 5958 -342 368 176 55 0 chrX 884747 884838 -176089302 + L1MB3 LINE L1 6087 6182 -1 22 0 0 0 chrX 885682 885704 -176088436 + AT_rich Low_complexity Low_complexity 1 22 0 1355 322 70 27 chrX 885962 886589 -176087551 + L1MA6 LINE L1 4 657 -6132 4143 206 19 53 chrX 886944 887990 -176086150 + L1MA6 LINE L1 1322 2331 -4458 * 11115 183 57 8 chrX 887982 889046 -176085094 + L1MA6 LINE L1 3266 4276 -2666 6383 50 10 0 chrX 889046 889847 -176084293 + L1PA5 LINE L1 5343 6151 -3 11115 183 57 8 chrX 889847 891801 -176082339 + L1MA6 LINE L1 4276 6132 -810 198 0 0 0 chrX 891801 891823 -176082317 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 345 24 0 0 chrX 891822 891864 -176082276 + (GA)n Simple_repeat Simple_repeat 2 43 0 11115 183 57 8 chrX 891823 892346 -176081794 + L1MA6 LINE L1 6132 6942 0 438 53 0 0 chrX 892688 892745 -176081395 + (CA)n Simple_repeat Simple_repeat 1 57 0 207 332 63 45 chrX 893062 893285 -176080855 + L2 LINE L2 2622 2848 -466 187 292 0 0 chrX 893294 893342 -176080798 + L2 LINE L2 2712 2759 -555 263 255 51 61 chrX 893703 893801 -176080339 + L2 LINE L2 3174 3270 -2 190 229 21 21 chrX 894731 894779 -176079361 + L2 LINE L2 3262 3309 -4 1960 268 38 13 chrX 894873 895080 -176079060 + MLT1F LTR MaLR 1 201 -341 1572 253 49 26 chrX 895080 895587 -176078553 - LTR40a LTR ERVL 0 519 1 1960 268 38 13 chrX 895587 895908 -176078232 + MLT1F LTR MaLR 201 542 0 261 302 27 27 chrX 895909 896058 -176078082 + MLT1F-int LTR MaLR 2 150 -1221 466 339 26 0 chrX 896081 896311 -176077829 + MLT1F-int LTR MaLR 277 512 -859 259 325 100 25 chrX 897568 897688 -176076452 + MIR SINE MIR 16 144 -64 7215 129 18 0 chrX 897692 898803 -176075337 - Tigger1 DNA MER2_type 0 2418 1288 4431 160 62 7 chrX 898805 899281 -176074859 - Tigger1 DNA MER2_type -1567 851 312 189 0 0 0 chrX 899281 899302 -176074838 + (GA)n Simple_repeat Simple_repeat 2 22 0 4431 160 62 7 chrX 899302 899631 -176074509 - Tigger1 DNA MER2_type -2106 312 2 201 74 0 0 chrX 900518 900545 -176073595 + (TG)n Simple_repeat Simple_repeat 1 27 0 227 161 18 0 chrX 901199 901255 -176072885 + (TA)n Simple_repeat Simple_repeat 2 58 0 444 319 52 7 chrX 901868 902003 -176072137 - MIR3 SINE MIR -38 170 30 4654 40 43 0 chrX 902297 902880 -176071260 + LTR14B LTR ERVK 1 608 0 29 0 0 0 chrX 903260 903289 -176070851 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chrX 904905 904933 -176069207 + AT_rich Low_complexity Low_complexity 1 28 0 207 281 317 0 chrX 905028 905110 -176069030 - L2 LINE L2 0 3313 3206 340 323 52 13 chrX 905226 905381 -176068759 + HAL1b LINE L1 1187 1347 -1 308 331 18 49 chrX 905635 905798 -176068342 - MIR SINE MIR -65 197 40 199 407 58 39 chrX 906500 906859 -176067281 + L2 LINE L2 2809 3174 -98 240 306 52 77 chrX 907751 907999 -176066141 - LTR33 LTR ERVL -1 520 279 1345 199 0 65 chrX 908294 908615 -176065525 - AluJo SINE Alu -12 300 1 293 305 21 59 chrX 908682 908869 -176065271 - HERVL LTR ERVL -326 5328 5149 22 35 0 0 chrX 909761 909790 -176064350 + GC_rich Low_complexity Low_complexity 1 29 0 1633 158 0 26 chrX 909919 910192 -176063948 - AluSx SINE Alu -46 266 1 351 241 80 58 chrX 913053 913190 -176060950 - MIR SINE MIR -56 206 67 348 273 115 22 chrX 913672 913811 -176060329 - MIR SINE MIR -3 259 108 405 353 98 5 chrX 914404 914628 -176059512 + MIR SINE MIR 12 256 -6 21 0 0 0 chrX 918234 918255 -176055885 + AT_rich Low_complexity Low_complexity 1 21 0 283 313 92 19 chrX 918687 918949 -176055191 + L1M4 LINE L1 4767 5047 -1099 1504 204 30 9 chrX 918987 919320 -176054820 - Charlie1b DNA MER1_type -176 347 8 27 0 0 0 chrX 920266 920293 -176053847 + AT_rich Low_complexity Low_complexity 1 27 0 192 234 0 0 chrX 920891 920938 -176053202 + CT-rich Low_complexity Low_complexity 6 52 0 5519 208 20 27 chrX 920992 921076 -176053064 + Cheshire DNA MER1_type 10 93 -2327 2146 107 10 0 chrX 921076 921367 -176052773 - AluSg SINE Alu -16 294 1 5519 208 20 27 chrX 921367 922507 -176051633 + Cheshire DNA MER1_type 93 1225 -1195 2955 179 44 123 chrX 922497 923470 -176050670 + Cheshire DNA MER1_type 1486 2377 -43 * 2323 89 13 0 chrX 923470 923773 -176050367 - AluY SINE Alu -4 307 1 2955 179 44 123 chrX 923773 923814 -176050326 + Cheshire DNA MER1_type 2377 2420 0 2459 101 28 6 chrX 924973 925329 -176048811 + THE1B LTR MaLR 1 364 0 10603 107 33 0 chrX 925329 926858 -176047282 + THE1B-int LTR MaLR 1 1580 0 2466 124 17 0 chrX 926861 927216 -176046924 + THE1B LTR MaLR 4 364 0 225 232 0 0 chrX 927818 927887 -176046253 + (TGAA)n Simple_repeat Simple_repeat 1 69 0 24 0 0 0 chrX 928875 928899 -176045241 + AT_rich Low_complexity Low_complexity 1 24 0 2485 62 0 10 chrX 929394 929700 -176044440 - AluY SINE Alu -8 303 1 516 283 61 53 chrX 931343 931703 -176042437 - MER34B LTR ERV1 0 565 203 180 300 117 42 chrX 931830 931950 -176042190 + L2 LINE L2 3140 3268 -4 214 343 14 0 chrX 932283 932356 -176041784 + MIR SINE MIR 150 223 -39 567 186 5 147 chrX 932879 933083 -176041057 + L1MD3 LINE L1 7322 7496 -499 344 207 103 0 chrX 933078 933165 -176040975 + L1MC3 LINE L1 7357 7452 -333 * 396 0 0 0 chrX 933167 933211 -176040929 + (CA)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chrX 933220 933241 -176040899 + (GA)n Simple_repeat Simple_repeat 2 22 0 25852 107 7 6 chrX 933260 933890 -176040250 + L1P LINE L1 1228 1856 -4290 2346 106 0 0 chrX 933890 934193 -176039947 + AluSg SINE Alu 3 305 -5 25852 107 7 6 chrX 934193 937470 -176036670 + L1P LINE L1 1856 5139 -1007 29 47 0 0 chrX 937472 937515 -176036625 + AT_rich Low_complexity Low_complexity 1 43 0 339 184 23 0 chrX 937612 937699 -176036441 + L1ME4a LINE L1 5977 6065 -56 2238 103 0 17 chrX 938404 938705 -176035435 + AluSx SINE Alu 1 296 -16 1710 176 7 14 chrX 938720 939010 -176035130 + AluJo SINE Alu 6 293 -19 25 0 0 0 chrX 939010 939035 -176035105 + AT_rich Low_complexity Low_complexity 1 25 0 885 174 97 0 chrX 939536 939732 -176034408 + MER33 DNA MER1_type 5 219 -105 218 292 0 15 chrX 940271 940336 -176033804 + GA-rich Low_complexity Low_complexity 1 64 0 3337 128 31 10 chrX 940381 940897 -176033243 - MER1A DNA MER1_type 0 527 1 23 0 0 0 chrX 941692 941715 -176032425 + AT_rich Low_complexity Low_complexity 1 23 0 464 133 8 125 chrX 941732 941860 -176032280 + MER33 DNA MER1_type 251 363 0 512 232 26 45 chrX 942516 942671 -176031469 - L2 LINE L2 0 3313 3162 27 29 0 0 chrX 943738 943772 -176030368 + AT_rich Low_complexity Low_complexity 1 34 0 2016 197 27 15 chrX 944230 944642 -176029498 + MER74A LTR ERVL 128 544 -14 361 238 98 14 chrX 944764 944907 -176029233 + L1MCa LINE L1 1345 1499 -4927 1689 171 13 25 chrX 945175 945490 -176028650 + AluJo SINE Alu 1 311 -1 327 167 0 0 chrX 946053 946119 -176028021 + T-rich Low_complexity Low_complexity 1 66 0 195 42 0 0 chrX 946162 946186 -176027954 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 34 0 0 0 chrX 946737 946771 -176027369 + AT_rich Low_complexity Low_complexity 1 34 0 216 0 0 0 chrX 946984 947008 -176027132 + (A)n Simple_repeat Simple_repeat 1 24 0 31 0 0 0 chrX 947601 947632 -176026508 + AT_rich Low_complexity Low_complexity 1 31 0 1806 184 3 0 chrX 947684 947994 -176026146 + AluJo SINE Alu 1 311 -1 206 362 41 53 chrX 948197 948515 -176025625 - L2 LINE L2 -957 2357 2044 243 257 0 29 chrX 949205 949275 -176024865 + Charlie8 DNA MER1_type 2344 2411 -6 1583 163 10 17 chrX 950809 951098 -176023042 - AluJb SINE Alu 0 312 26 26 30 0 0 chrX 951201 951234 -176022906 + AT_rich Low_complexity Low_complexity 1 33 0 1505 192 23 23 chrX 951391 951698 -176022442 + AluSx SINE Alu 1 307 -5 21 36 0 0 chrX 952344 952372 -176021768 + AT_rich Low_complexity Low_complexity 1 28 0 1483 213 3 17 chrX 953742 954042 -176020098 - AluJo SINE Alu -16 296 1 240 179 0 0 chrX 954378 954417 -176019723 + Charlie5 DNA MER1_type 12 50 -2562 1280 109 14 14 chrX 954539 954750 -176019390 + L1MA5A LINE L1 6086 6296 -1 286 284 11 0 chrX 954751 954839 -176019301 + L1ME1 LINE L1 6028 6116 -50 1975 144 13 3 chrX 954845 955143 -176018997 + AluJb SINE Alu 5 305 -7 2192 101 7 0 chrX 955220 955522 -176018618 + AluSg SINE Alu 1 304 0 850 148 42 64 chrX 955554 955790 -176018350 + Charlie5 DNA MER1_type 2355 2585 -27 193 353 0 0 chrX 955970 956038 -176018102 - L2 LINE L2 -8 3264 3197 362 354 36 31 chrX 956041 956264 -176017876 - L2 LINE L2 -399 2915 2692 429 242 81 12 chrX 956734 956895 -176017245 + L1ME4a LINE L1 5929 6100 -21 1203 318 95 29 chrX 957145 958019 -176016121 + L2 LINE L2 2149 3081 -232 681 289 68 17 chrX 958560 958653 -176015487 - MIR SINE MIR -14 248 161 2042 157 8 45 chrX 958653 958946 -176015194 + MER47A DNA MER2_type 1 278 -2045 2236 102 10 0 chrX 958946 959241 -176014899 - AluSx SINE Alu -14 298 1 2042 157 8 45 chrX 959241 959324 -176014816 + MER47A DNA MER2_type 278 363 -3 681 289 68 17 chrX 959324 959465 -176014675 - MIR SINE MIR -101 161 2 861 232 91 75 chrX 960692 960998 -176013142 - MLT1D LTR MaLR 0 505 190 2083 137 7 0 chrX 960998 961290 -176012850 - AluSx SINE Alu -18 294 1 861 232 91 75 chrX 961290 961367 -176012773 - MLT1D LTR MaLR -315 190 116 284 296 138 37 chrX 962161 962350 -176011790 - MLT1J LTR MaLR -261 250 43 292 339 18 18 chrX 963678 963790 -176010350 - L2 LINE L2 -609 2705 2594 2635 140 22 36 chrX 963799 964292 -176009848 - LTR29 LTR ERV1 0 622 137 242 29 29 0 chrX 964707 964742 -176009398 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1589 174 19 32 chrX 965709 966019 -176008121 + AluJo SINE Alu 1 306 -6 2811 93 0 3 chrX 966536 966911 -176007229 + THE1C LTR MaLR 1 374 -1 315 0 0 0 chrX 967111 967146 -176006994 + (A)n Simple_repeat Simple_repeat 1 35 0 28 61 0 0 chrX 968516 968565 -176005575 + AT_rich Low_complexity Low_complexity 1 49 0 480 18 0 0 chrX 969407 969464 -176004676 + (CA)n Simple_repeat Simple_repeat 2 58 0 364 329 21 14 chrX 969855 969995 -176004145 + MIR3 SINE MIR 6 146 -62 367 321 142 14 chrX 970399 970695 -176003445 + L2 LINE L2 2843 3176 -137 556 320 109 68 chrX 970699 971555 -176002585 + L2 LINE L2 2436 3313 0 242 269 6 154 chrX 971559 971715 -176002425 + L2 LINE L2 3174 3306 -7 815 313 55 13 chrX 972203 972571 -176001569 + LTR16A LTR ERVL 19 429 -21 274 156 22 0 chrX 973329 973374 -176000766 + MLT1D LTR MaLR 1 46 -459 321 293 101 0 chrX 974473 974572 -175999568 - MIR3 SINE MIR -48 160 52 649 134 34 8 chrX 975878 975994 -175998146 + MLT2C1 LTR ERVL 3 121 -276 3228 114 37 18 chrX 975994 976502 -175997638 + LTR8 LTR ERV1 1 518 -173 1334 112 31 10 chrX 976538 976734 -175997406 + LTR8 LTR ERV1 492 691 0 1032 199 57 27 chrX 976737 976952 -175997188 + MLT2C1 LTR ERVL 128 354 -43 182 37 37 0 chrX 976952 976979 -175997161 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 1032 199 57 27 chrX 976979 977025 -175997115 + MLT2C1 LTR ERVL 354 397 0 252 130 0 0 chrX 977453 977499 -175996641 + (GA)n Simple_repeat Simple_repeat 1 46 0 2778 124 76 68 chrX 977969 978510 -175995630 - LTR10A LTR ERV1 -64 545 1 1889 236 76 9 chrX 978515 978976 -175995164 - MLT1F LTR MaLR -50 492 1 2214 95 62 9 chrX 979438 979775 -175994365 - THE1A LTR MaLR 0 355 1 288 401 37 0 chrX 980589 980751 -175993389 + MIR3 SINE MIR 10 177 -31 1356 167 51 31 chrX 981864 982157 -175991983 + MLT1B LTR MaLR 1 299 -91 343 107 89 0 chrX 982157 982213 -175991927 - MLT1A2 LTR MaLR -1 389 329 1927 109 34 0 chrX 982215 982482 -175991658 - AluSc SINE Alu -8 301 26 652 181 83 0 chrX 982586 982730 -175991410 - MLT1A2 LTR MaLR -218 156 1 511 131 107 0 chrX 982732 982816 -175991324 + MLT1B LTR MaLR 297 389 -1 711 226 6 0 chrX 982868 983036 -175991104 - MER97b DNA MER1_type? -321 732 564 1385 162 9 4 chrX 983074 983303 -175990837 - MER46A DNA MER2_type -6 230 1 863 201 242 0 chrX 983303 983547 -175990593 - MER58B DNA MER1_type -35 306 4 1280 229 87 0 chrX 983550 983614 -175990526 - MER97a DNA MER1_type? -325 569 512 1668 148 55 10 chrX 983614 983904 -175990236 - AluJo SINE Alu -1 311 9 1280 229 87 0 chrX 983904 984184 -175989956 - MER97a DNA MER1_type? -382 512 195 367 244 6 21 chrX 984273 984440 -175989700 - MER97a DNA MER1_type? -848 205 4 333 0 0 0 chrX 984943 984980 -175989160 + (TG)n Simple_repeat Simple_repeat 1 37 0 460 175 93 10 chrX 985667 985764 -175988376 - MIR SINE MIR -74 188 84 246 337 116 0 chrX 987777 987863 -175986277 - MIR SINE MIR -76 132 37 1586 101 28 15 chrX 989617 989921 -175984219 + MER61A LTR ERV1 1 343 0 846 201 0 27 chrX 990435 990619 -175983521 - AluJb SINE Alu -7 305 127 5779 190 66 36 chrX 990767 992172 -175981968 - Charlie1a DNA MER1_type -1 1454 7 573 251 18 35 chrX 992724 992895 -175981245 - MIR SINE MIR 0 262 95 533 307 76 44 chrX 992895 993710 -175980430 + L1MC/D LINE L1 4494 5361 -1122 2442 80 3 0 chrX 993710 994021 -175980119 + AluSp SINE Alu 1 312 -1 533 307 76 44 chrX 994021 994399 -175979741 + L1MC/D LINE L1 5361 5725 -758 213 161 54 11 chrX 994760 994853 -175979287 + (TA)n Simple_repeat Simple_repeat 2 98 0 276 289 94 25 chrX 995061 995220 -175978920 - L2 LINE L2 -169 3103 2934 2426 125 11 19 chrX 995656 996033 -175978107 - THE1C LTR MaLR 0 375 2 9321 124 46 43 chrX 996034 997609 -175976531 - THE1C-int LTR MaLR 0 1580 1 2282 117 35 16 chrX 997609 997976 -175976164 - THE1C LTR MaLR 0 375 2 1007 174 92 5 chrX 998347 998542 -175975598 - MLT1B LTR MaLR 0 390 179 1164 188 0 22 chrX 998573 998802 -175975338 - AluJo SINE Alu -3 309 86 740 224 0 46 chrX 998830 999004 -175975136 - MLT1B LTR MaLR -224 166 1 216 122 0 0 chrX 999012 999053 -175975087 + (T)n Simple_repeat Simple_repeat 1 41 0 1460 179 10 57 chrX 999279 999580 -175974560 - AluJb SINE Alu -21 291 5 181 212 0 0 chrX 999619 999652 -175974488 - MIR SINE MIR -64 144 112 1375 215 90 68 chrX 999707 1000332 -175973808 - LTR8A LTR ERV1 0 727 55 4646 152 21 28 chrX 1000363 1001327 -175972813 - MER11C LTR ERVK -25 1046 1 252 68 136 23 chrX 1001336 1001380 -175972760 - LTR8 LTR ERV1 -642 49 1 2343 195 12 82 chrX 1001471 1002067 -175972073 - MLT2B3 LTR ERVL 0 554 1 199 185 0 31 chrX 1002075 1002140 -175972000 + (CAT)n Simple_repeat Simple_repeat 1 63 0 291 184 345 0 chrX 1003240 1003327 -175970813 + L2 LINE L2 3195 3311 -2 186 287 115 11 chrX 1003795 1003882 -175970258 + MIR SINE MIR 36 131 -131 2034 117 3 0 chrX 1004190 1004473 -175969667 + AluSq SINE Alu 17 300 -13 290 255 78 54 chrX 1005349 1005553 -175968587 - L1P5 LINE L1 -580 5574 5366 457 200 0 0 chrX 1005576 1005651 -175968489 + MER1B DNA MER1_type 7 81 -256 * 1057 131 17 40 chrX 1005645 1005820 -175968320 + MER1B DNA MER1_type 169 339 0 200 143 24 0 chrX 1006297 1006339 -175967801 + (TA)n Simple_repeat Simple_repeat 1 43 0 433 232 119 81 chrX 1009122 1009307 -175964833 + MIR SINE MIR 28 219 -43 250 364 50 0 chrX 1009336 1009476 -175964664 + LTR16A LTR ERVL 225 371 -79 759 220 47 86 chrX 1009989 1010056 -175964084 - MIR SINE MIR 0 262 194 778 172 8 15 chrX 1010056 1010190 -175963950 - FLAM_C SINE Alu 0 133 1 759 220 47 86 chrX 1010190 1010377 -175963763 - MIR SINE MIR -68 194 18 453 233 0 78 chrX 1012131 1012247 -175961893 - MER69 DNA AcHobo -70 2456 1 515 264 49 28 chrX 1012420 1012564 -175961576 - MER63A DNA MER1_type 0 210 64 638 299 118 50 chrX 1012947 1013345 -175960795 - L2 LINE L2 0 3313 2889 494 349 45 65 chrX 1013331 1013583 -175960557 - L2 LINE L2 -356 2958 2718 * 1377 172 122 11 chrX 1013583 1013845 -175960295 - AluJb SINE Alu -21 291 1 494 349 45 65 chrX 1013845 1014054 -175960086 - L2 LINE L2 -596 2718 2506 1955 137 38 3 chrX 1014054 1014346 -175959794 - AluSx SINE Alu -10 302 1 1515 214 0 22 chrX 1014406 1014724 -175959416 + AluJo SINE Alu 1 311 -1 246 225 0 14 chrX 1015586 1015657 -175958483 - L1MC4 LINE L1 -1320 6722 6653 233 292 0 0 chrX 1015624 1015696 -175958444 + L1MC4 LINE L1 6614 6685 -1357 * 2252 99 0 0 chrX 1015697 1015979 -175958161 - AluSx SINE Alu -29 283 2 22 0 0 0 chrX 1016370 1016392 -175957748 + AT_rich Low_complexity Low_complexity 1 22 0 447 265 112 6 chrX 1016551 1016721 -175957419 + MIR SINE MIR 2 189 -73 1126 298 24 38 chrX 1017352 1017805 -175956335 + L2 LINE L2 1804 2250 -1064 1217 254 95 40 chrX 1017808 1018333 -175955807 + MLT1G1 LTR MaLR 1 595 0 1107 286 160 25 chrX 1018346 1019200 -175954940 + L2 LINE L2 2262 3229 -84 1821 233 37 31 chrX 1019655 1020165 -175953975 - LTR40a LTR ERVL 0 519 7 1226 207 47 76 chrX 1020169 1020551 -175953589 + MLT1A2 LTR MaLR 4 374 0 1602 179 26 29 chrX 1020609 1020917 -175953223 + AluJo SINE Alu 1 307 -5 26 30 0 0 chrX 1021055 1021088 -175953052 + AT_rich Low_complexity Low_complexity 1 33 0 197 327 71 44 chrX 1021280 1021393 -175952747 + MIR SINE MIR 68 183 -79 231 393 131 35 chrX 1021656 1021969 -175952171 + L2 LINE L2 2925 3267 -5 726 309 36 12 chrX 1022056 1022308 -175951832 + MIR SINE MIR 5 262 0 432 0 0 0 chrX 1023759 1023807 -175950333 + (TG)n Simple_repeat Simple_repeat 2 49 0 429 20 0 0 chrX 1024508 1024558 -175949582 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 346 338 101 31 chrX 1025611 1025839 -175948301 + MIR SINE MIR 9 252 -10 502 324 49 0 chrX 1025992 1026177 -175947963 + MIR SINE MIR 3 196 -66 2368 92 0 0 chrX 1026707 1027000 -175947140 + AluSg SINE Alu 1 293 -17 24 32 0 0 chrX 1027887 1027918 -175946222 + AT_rich Low_complexity Low_complexity 1 31 0 660 310 51 0 chrX 1028353 1028550 -175945590 + MIR SINE MIR 25 231 -31 233 266 25 0 chrX 1028574 1028653 -175945487 + (TA)n Simple_repeat Simple_repeat 2 82 0 306 0 0 0 chrX 1029670 1029704 -175944436 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chrX 1029704 1029733 -175944407 + AT_rich Low_complexity Low_complexity 1 29 0 25 83 0 0 chrX 1030022 1030082 -175944058 + AT_rich Low_complexity Low_complexity 1 60 0 377 237 43 36 chrX 1032147 1032286 -175941854 + MIR SINE MIR 13 152 -110 954 238 28 68 chrX 1032739 1033063 -175941077 + MER93a LTR ERV1 92 402 0 651 355 105 13 chrX 1033207 1033598 -175940542 + L2 LINE L2 793 1219 -2095 840 186 61 85 chrX 1033759 1034006 -175940134 - MER57A LTR ERV1 -28 375 135 3374 159 5 5 chrX 1034024 1034616 -175939524 - L1PA16 LINE L1 -3 6163 5572 188 371 52 35 chrX 1034950 1035066 -175939074 + L2 LINE L2 3142 3259 -13 396 318 12 29 chrX 1035218 1035388 -175938752 + MIR SINE MIR 1 167 -95 2096 61 0 58 chrX 1035638 1035933 -175938207 - L1PA7 LINE L1 -11 6143 5866 11928 114 9 27 chrX 1035958 1038416 -175935724 - L1P3 LINE L1 -4001 2460 2 25 65 0 0 chrX 1038689 1038735 -175935405 + AT_rich Low_complexity Low_complexity 1 46 0 2411 115 120 5 chrX 1039607 1039991 -175934149 - MSTA LTR MaLR 0 428 1 254 202 24 36 chrX 1040393 1040477 -175933663 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 195 386 64 0 chrX 1042707 1042847 -175931293 - MIR SINE MIR -17 245 97 213 182 68 0 chrX 1042898 1042942 -175931198 + MIR SINE MIR 122 168 -94 2526 44 3 0 chrX 1043206 1043501 -175930639 - AluY SINE Alu -15 296 1 230 313 109 55 chrX 1043646 1043774 -175930366 + MIR3 SINE MIR 51 185 -23 2197 101 24 3 chrX 1144113 1144409 -175829731 - AluSg SINE Alu -8 302 1 649 165 0 10 chrX 1145569 1145819 -175828321 + AluJb SINE Alu 11 294 -18 368 236 138 98 chrX 1145977 1145989 -175828151 - MIR SINE MIR -25 237 227 4722 106 25 63 chrX 1145989 1146799 -175827341 - MER4E LTR ERV1 0 779 1 368 236 138 98 chrX 1146799 1146956 -175827184 - MIR SINE MIR -35 227 54 2288 101 0 0 chrX 1146956 1147252 -175826888 + AluSg SINE Alu 1 296 -14 368 236 138 98 chrX 1147252 1147306 -175826834 - MIR SINE MIR -208 54 4 22 25 0 25 chrX 1147850 1147868 -175826272 + AT_rich Low_complexity Low_complexity 1 18 -21 1977 146 0 7 chrX 1147868 1148155 -175825985 + AluSx SINE Alu 1 285 -27 22 25 0 25 chrX 1148155 1148176 -175825964 + AT_rich Low_complexity Low_complexity 18 39 0 457 279 127 12 chrX 1148377 1148542 -175825598 + MER5A DNA MER1_type 6 189 0 180 354 34 41 chrX 1148990 1149137 -175825003 + L2 LINE L2 333 478 -2836 23 68 0 0 chrX 1149231 1149275 -175824865 + AT_rich Low_complexity Low_complexity 1 44 0 324 299 15 104 chrX 1149592 1149793 -175824347 - MER102b DNA MER1_type 0 341 159 2394 59 3 3 chrX 1149793 1150081 -175824059 - AluSp SINE Alu -16 297 10 1277 124 0 83 chrX 1150139 1150356 -175823784 - AluSx SINE Alu -10 302 104 710 36 0 0 chrX 1150356 1150440 -175823700 - AluY SINE Alu -13 298 215 739 119 0 51 chrX 1150440 1150558 -175823582 - AluSq/x SINE Alu -196 116 5 1843 136 52 0 chrX 1150610 1150896 -175823244 + AluSx SINE Alu 1 301 -11 870 227 76 29 chrX 1150896 1151239 -175822901 + L1MC4 LINE L1 7211 7569 -473 599 180 0 9 chrX 1151247 1151358 -175822782 + Tigger7 DNA MER2_type 2370 2479 -8 2364 90 0 3 chrX 1152381 1152681 -175821459 - AluSc SINE Alu -10 299 1 225 241 0 0 chrX 1152760 1152814 -175821326 - MER53 DNA DNA -135 54 1 426 244 119 19 chrX 1152876 1153036 -175821104 + MER102a DNA MER1_type 135 310 -20 216 0 0 0 chrX 1153205 1153229 -175820911 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1277 108 5 78 chrX 1153239 1153443 -175820697 - AluSg/x SINE Alu -23 289 101 1513 163 29 56 chrX 1153654 1153960 -175820180 - AluJb SINE Alu -14 298 1 29 0 0 0 chrX 1155544 1155573 -175818567 + AT_rich Low_complexity Low_complexity 1 29 0 1906 152 3 29 chrX 1155722 1156031 -175818109 - AluSx SINE Alu -11 301 1 39 50 0 0 chrX 1156586 1156646 -175817494 + AT_rich Low_complexity Low_complexity 1 60 0 1894 169 10 0 chrX 1156681 1156982 -175817158 - AluJo SINE Alu -8 304 1 1303 184 41 68 chrX 1157120 1157413 -175816727 - AluJo SINE Alu -23 289 5 678 211 0 0 chrX 1157481 1157604 -175816536 - AluJb SINE Alu -181 131 9 375 154 0 0 chrX 1157863 1157928 -175816212 + T-rich Low_complexity Low_complexity 5 69 0 824 274 115 13 chrX 1158184 1158498 -175815642 + MLT2F LTR ERVL 17 362 -301 3461 269 59 14 chrX 1158539 1159589 -175814551 + ERVL LTR ERVL 2644 3740 -2024 1198 220 4 4 chrX 1159654 1159895 -175814245 + ERVL LTR ERVL 4138 4378 -1386 1776 112 68 4 chrX 1160048 1160326 -175813814 + AluSc SINE Alu 1 296 -13 222 37 0 0 chrX 1161310 1161337 -175812803 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2045 105 0 3 chrX 1161416 1161701 -175812439 - AluSx SINE Alu -5 307 24 1868 194 0 0 chrX 1162871 1163181 -175810959 - AluSx SINE Alu 0 312 3 204 40 0 0 chrX 1163373 1163398 -175810742 + (A)n Simple_repeat Simple_repeat 1 25 0 2334 93 0 10 chrX 1164863 1165173 -175808967 - AluSg1 SINE Alu -2 307 1 183 184 0 0 chrX 1165895 1165933 -175808207 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 262 222 0 19 chrX 1167997 1168051 -175806089 + L2 LINE L2 3216 3268 -4 1857 169 0 10 chrX 1168228 1168542 -175805598 - AluJb SINE Alu -1 311 1 492 279 60 40 chrX 1168723 1168929 -175805211 + MIR SINE MIR 44 257 -5 2101 143 0 0 chrX 1169600 1169893 -175804247 - AluSq SINE Alu -19 294 2 190 236 132 47 chrX 1171928 1172034 -175802106 + MIR SINE MIR 31 145 -63 1037 173 0 6 chrX 1172412 1172585 -175801555 + AluJb SINE Alu 132 303 -9 2107 176 2 30 chrX 1172651 1173054 -175801086 + MLT2D LTR ERVL 10 401 -13 211 337 157 11 chrX 1174217 1174395 -175799745 - MIR SINE MIR -1 261 58 1949 164 3 0 chrX 1175063 1175368 -175798772 + AluJb SINE Alu 1 306 -6 531 247 34 22 chrX 1175556 1175734 -175798406 + MER104 DNA MER2_type 1 180 0 972 213 98 9 chrX 1175788 1176013 -175798127 - AluJo SINE Alu -44 268 24 361 242 8 94 chrX 1176222 1176350 -175797790 - MIR SINE MIR -71 191 75 2232 123 0 0 chrX 1176356 1176657 -175797483 + AluSq SINE Alu 1 301 -12 1874 156 10 0 chrX 1177283 1177578 -175796562 - AluJb SINE Alu -14 298 1 1814 135 0 48 chrX 1177799 1178112 -175796028 + AluSx SINE Alu 9 307 0 219 36 0 0 chrX 1179113 1179141 -175794999 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 228 297 144 25 chrX 1179141 1179259 -175794881 - MIR3 SINE MIR -62 146 15 2255 113 0 3 chrX 1179293 1179595 -175794545 + AluSx SINE Alu 1 301 -11 396 0 0 0 chrX 1180329 1180373 -175793767 + (TG)n Simple_repeat Simple_repeat 1 44 0 2191 93 0 4 chrX 1180373 1180653 -175793487 - AluSx SINE Alu -33 279 1 1141 104 46 20 chrX 1181175 1181492 -175792648 - THE1C LTR MaLR 0 375 1 2071 121 13 7 chrX 1181523 1181830 -175792310 + AluY SINE Alu 1 309 -2 235 273 143 0 chrX 1181833 1181910 -175792230 + MIR3 SINE MIR 120 207 -1 1748 170 3 7 chrX 1182493 1182787 -175791353 + AluJb SINE Alu 2 294 -18 25 31 0 0 chrX 1182983 1183015 -175791125 + AT_rich Low_complexity Low_complexity 1 32 0 2028 115 63 0 chrX 1183751 1184037 -175790103 + AluSg SINE Alu 1 304 -6 322 279 7 20 chrX 1184154 1184270 -175789870 + L1ME4a LINE L1 5778 5893 -228 1008 178 6 18 chrX 1184270 1184439 -175789701 + FAM SINE Alu 1 167 -8 322 279 7 20 chrX 1184439 1184469 -175789671 + L1ME4a LINE L1 5893 5922 -199 353 289 0 0 chrX 1184585 1184675 -175789465 - L1MC4 LINE L1 -1339 6703 6614 338 272 0 22 chrX 1184595 1184687 -175789453 + L1MC4 LINE L1 6614 6703 -1339 * 180 111 0 0 chrX 1184687 1184714 -175789426 + (TA)n Simple_repeat Simple_repeat 2 28 0 485 316 119 14 chrX 1184830 1185048 -175789092 - MIR SINE MIR -16 246 6 21 0 0 0 chrX 1185694 1185715 -175788425 + AT_rich Low_complexity Low_complexity 1 21 0 685 247 37 0 chrX 1186100 1186262 -175787878 + MER45A DNA AcHobo 6 173 -5 189 250 0 0 chrX 1186266 1186310 -175787830 - L2 LINE L2 -62 3251 3208 484 165 48 10 chrX 1186474 1186577 -175787563 + AluSq/x SINE Alu 1 107 -206 1086 157 0 12 chrX 1186764 1186936 -175787204 + AluSg/x SINE Alu 128 297 -15 2282 71 9 52 chrX 1187762 1188088 -175786052 + AluSx SINE Alu 1 312 0 1669 171 21 4 chrX 1189443 1189724 -175784416 - AluJb SINE Alu -26 286 1 1901 178 0 9 chrX 1191538 1191853 -175782287 - AluJo SINE Alu 0 312 1 2234 89 4 0 chrX 1192054 1192334 -175781806 - AluSq SINE Alu -32 281 1 797 258 40 74 chrX 1192462 1192842 -175781298 - L1MC4 LINE L1 -1865 5943 5577 286 196 72 21 chrX 1192854 1192951 -175781189 - L1MC4 LINE L1 -2300 5508 5407 2037 161 0 0 chrX 1193138 1193443 -175780697 + AluSx SINE Alu 1 305 -7 27 62 0 0 chrX 1193630 1193678 -175780462 + AT_rich Low_complexity Low_complexity 1 48 0 1821 182 3 6 chrX 1193893 1194265 -175779875 + AluJo SINE Alu 1 371 0 894 184 20 0 chrX 1194510 1194657 -175779483 + FRAM SINE Alu 1 146 -30 29 0 0 0 chrX 1194673 1194702 -175779438 + AT_rich Low_complexity Low_complexity 1 29 0 270 224 118 0 chrX 1194803 1194879 -175779261 - L2 LINE L2 -12 3301 3217 1613 154 0 0 chrX 1194879 1195125 -175779015 + AluSx SINE Alu 53 298 -14 2229 119 3 0 chrX 1195534 1195845 -175778295 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 1195958 1195981 -175778159 + AT_rich Low_complexity Low_complexity 1 23 0 2249 103 0 0 chrX 1196403 1196695 -175777445 + AluSx SINE Alu 1 292 -20 2338 86 10 0 chrX 1196695 1196998 -175777142 + AluSq SINE Alu 1 306 -7 2108 112 7 0 chrX 1197007 1197302 -175776838 + AluSg SINE Alu 1 297 -13 261 288 119 8 chrX 1197334 1197452 -175776688 + L2 LINE L2 3171 3301 -12 2132 132 24 0 chrX 1197454 1197750 -175776390 + AluSx SINE Alu 1 303 -9 2419 70 0 3 chrX 1198139 1198441 -175775699 + AluSc SINE Alu 2 302 -7 2065 135 0 0 chrX 1198445 1198754 -175775386 + AluSx SINE Alu 1 309 0 725 194 8 0 chrX 1198890 1199019 -175775121 + FLAM_A SINE Alu 1 130 -3 1871 132 0 31 chrX 1200627 1200914 -175773226 + AluSx SINE Alu 1 278 -34 254 96 0 19 chrX 1200917 1200969 -175773171 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1754 82 16 4 chrX 1201108 1201352 -175772788 + L1PA7 LINE L1 5905 6151 -3 206 189 11 137 chrX 1201449 1201544 -175772596 + MIR SINE MIR 170 252 -10 21 71 0 0 chrX 1201877 1201919 -175772221 + AT_rich Low_complexity Low_complexity 1 42 0 2011 152 7 7 chrX 1202281 1202590 -175771550 + AluSx SINE Alu 3 311 -1 250 305 42 0 chrX 1204060 1204155 -175769985 - L2 LINE L2 -927 2387 2289 203 315 62 88 chrX 1204164 1204236 -175769904 - L2 LINE L2 -1320 1994 1922 1779 178 3 0 chrX 1204236 1204534 -175769606 - AluSx SINE Alu 0 312 14 203 315 62 88 chrX 1204534 1204848 -175769292 - L2 LINE L2 -1392 1922 1618 2157 102 20 0 chrX 1205302 1205607 -175768533 + AluSx SINE Alu 1 311 -1 24 0 0 0 chrX 1205669 1205693 -175768447 + AT_rich Low_complexity Low_complexity 1 24 0 2310 89 0 3 chrX 1205816 1206118 -175768022 + AluY SINE Alu 1 301 -10 2195 132 3 0 chrX 1206323 1206633 -175767507 - AluSx SINE Alu -1 311 1 2049 127 0 0 chrX 1207380 1207699 -175766441 - AluSx SINE Alu 0 319 1 924 161 86 0 chrX 1207868 1208042 -175766098 - MER46A DNA MER2_type 0 236 48 2274 97 0 7 chrX 1208205 1208503 -175765637 - AluSg SINE Alu -14 296 1 2328 89 3 3 chrX 1208776 1209080 -175765060 + AluSg SINE Alu 1 304 -6 307 190 0 0 chrX 1209081 1209139 -175765001 - MER46A DNA MER2_type -178 58 1 286 193 0 0 chrX 1209091 1209148 -175764992 + MER46A DNA MER2_type 97 153 -83 * 27 49 0 0 chrX 1209330 1209371 -175764769 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chrX 1209592 1209616 -175764524 + AT_rich Low_complexity Low_complexity 1 24 0 1946 143 3 16 chrX 1209819 1210133 -175764007 + AluJb SINE Alu 3 312 0 38 0 0 0 chrX 1210328 1210366 -175763774 + AT_rich Low_complexity Low_complexity 1 38 0 1586 99 19 0 chrX 1210366 1210578 -175763562 - AluSg/x SINE Alu -15 295 80 1391 165 0 35 chrX 1210578 1210832 -175763308 + AluJo SINE Alu 67 311 -1 1559 159 10 51 chrX 1210965 1211145 -175762995 - AluJb SINE Alu 0 316 152 2208 106 0 3 chrX 1211145 1211437 -175762703 - AluY SINE Alu -20 291 1 1559 159 10 51 chrX 1211437 1211584 -175762556 - AluJb SINE Alu -164 152 1 884 200 22 0 chrX 1211971 1212156 -175761984 + L1MC4 LINE L1 6815 7003 -1039 * 2307 221 88 56 chrX 1212153 1212265 -175761875 + L1MC3 LINE L1 6188 6295 -1490 1977 127 3 11 chrX 1212265 1212585 -175761555 + AluSx SINE Alu 1 318 0 2307 221 88 56 chrX 1212585 1212874 -175761266 + L1MC3 LINE L1 6295 6573 -1212 195 42 0 0 chrX 1212874 1212898 -175761242 + (TAGA)n Simple_repeat Simple_repeat 3 26 0 2307 221 88 56 chrX 1212898 1213265 -175760875 + L1MC3 LINE L1 6573 6992 -793 1814 150 56 0 chrX 1213265 1213552 -175760588 - AluSx SINE Alu -9 303 1 2307 221 88 56 chrX 1213552 1213666 -175760474 + L1MC3 LINE L1 6992 7101 -684 374 241 0 11 chrX 1213666 1213753 -175760387 + MLT1F1 LTR MaLR 40 125 -442 651 206 25 25 chrX 1213754 1213914 -175760226 + L1MD3 LINE L1 7404 7563 -432 416 154 86 26 chrX 1214063 1214180 -175759960 + L1MC4 LINE L1 7918 8041 -1 1464 208 54 17 chrX 1214211 1214509 -175759631 - AluJo SINE Alu -3 309 1 1752 173 0 46 chrX 1214575 1214898 -175759242 - AluJo SINE Alu -4 308 1 949 158 99 0 chrX 1214900 1215122 -175759018 + L1MCa LINE L1 2158 2401 -4025 332 357 66 63 chrX 1215529 1215665 -175758475 - L2 LINE L2 -18 3254 3120 2091 127 0 31 chrX 1215665 1215987 -175758153 + AluSx SINE Alu 1 312 0 332 357 66 63 chrX 1215987 1216197 -175757943 - L2 LINE L2 -152 3120 2907 510 152 181 0 chrX 1216728 1216833 -175757307 + FLAM_C SINE Alu 3 126 -17 44 0 0 0 chrX 1216833 1216877 -175757263 + AT_rich Low_complexity Low_complexity 1 44 0 2314 98 0 3 chrX 1217820 1218125 -175756015 + AluSg SINE Alu 1 304 -6 249 56 0 0 chrX 1218299 1218335 -175755805 - AluJo SINE Alu -9 291 256 240 268 78 20 chrX 1218533 1218686 -175755454 + L1MC5 LINE L1 7503 7664 -297 1528 204 4 0 chrX 1218742 1219002 -175755138 - AluJo SINE Alu -49 263 3 21 0 0 0 chrX 1219203 1219224 -175754916 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chrX 1220270 1220312 -175753828 + AT_rich Low_complexity Low_complexity 1 42 0 294 241 113 0 chrX 1220404 1220545 -175753595 + L1ME LINE L1 5629 5785 -336 1016 174 23 46 chrX 1220559 1220777 -175753363 - AluJo SINE Alu -5 307 95 2337 97 3 0 chrX 1220808 1221107 -175753033 + AluSp SINE Alu 1 300 -13 2222 129 0 3 chrX 1221107 1221418 -175752722 + AluSx SINE Alu 1 310 -2 1927 142 7 0 chrX 1221427 1221752 -175752388 + AluSx SINE Alu 1 327 0 1611 201 4 4 chrX 1222145 1222424 -175751716 + AluJb SINE Alu 13 291 -21 297 0 0 0 chrX 1222425 1222439 -175751701 + (TG)n Simple_repeat Simple_repeat 1 47 0 297 0 0 0 chrX 1222439 1222472 -175751668 + (TG)n Simple_repeat Simple_repeat 2 34 0 2270 106 3 0 chrX 1222658 1222961 -175751179 + AluSp SINE Alu 1 304 -9 234 233 67 58 chrX 1223231 1223351 -175750789 + L1ME LINE L1 5705 5825 -296 752 149 0 37 chrX 1223379 1223513 -175750627 - FLAM_C SINE Alu -1 142 14 252 0 0 0 chrX 1223527 1223555 -175750585 + (TA)n Simple_repeat Simple_repeat 2 29 0 2315 84 10 3 chrX 1223555 1223854 -175750286 - AluSq SINE Alu -9 304 4 1345 233 89 83 chrX 1224019 1224949 -175749191 + L1ME3 LINE L1 4337 5275 -871 2215 122 0 0 chrX 1224949 1225244 -175748896 + AluSx SINE Alu 1 295 -17 1345 233 89 83 chrX 1225244 1225285 -175748855 + L1ME3 LINE L1 5275 5314 -832 558 266 125 41 chrX 1225282 1225451 -175748689 + L1ME3 LINE L1 5677 5830 -332 * 2407 93 0 3 chrX 1225451 1225762 -175748378 + AluSg SINE Alu 1 310 0 558 266 125 41 chrX 1225762 1226032 -175748108 + L1ME3 LINE L1 5830 6153 -9 2086 124 34 47 chrX 1226431 1226811 -175747329 - THE1C LTR MaLR 0 375 1 23 33 0 0 chrX 1227406 1227436 -175746704 + AT_rich Low_complexity Low_complexity 1 30 0 2321 92 0 7 chrX 1227669 1227975 -175746165 + AluY SINE Alu 1 304 -7 808 129 0 64 chrX 1228182 1228322 -175745818 - FLAM_C SINE Alu 0 133 3 271 313 133 0 chrX 1228963 1229113 -175745027 - L2 LINE L2 -207 3065 2896 2459 84 0 0 chrX 1229254 1229564 -175744576 + AluY SINE Alu 1 310 -1 307 244 33 22 chrX 1229572 1229662 -175744478 - L1MC4 LINE L1 -1340 6702 6612 905 79 28 11 chrX 1229681 1229858 -175744282 + (TA)n Simple_repeat Simple_repeat 1 180 0 838 176 59 26 chrX 1229956 1230109 -175744031 + FAM SINE Alu 1 158 -17 1250 179 122 4 chrX 1230266 1230383 -175743757 + AluJo SINE Alu 1 103 -209 222 62 0 0 chrX 1230383 1230415 -175743725 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1250 179 122 4 chrX 1230415 1230559 -175743581 + AluJo SINE Alu 103 293 -19 389 289 132 0 chrX 1230854 1231013 -175743127 - MIR SINE MIR -12 250 71 288 77 0 0 chrX 1231780 1231819 -175742321 + (TA)n Simple_repeat Simple_repeat 1 39 0 2384 67 3 7 chrX 1231819 1232118 -175742022 - AluY SINE Alu -13 298 1 2104 110 3 7 chrX 1232725 1232901 -175741239 - AluSc SINE Alu -11 298 122 216 0 0 0 chrX 1232901 1232925 -175741215 + (TG)n Simple_repeat Simple_repeat 2 25 0 2104 110 3 7 chrX 1232925 1233047 -175741093 - AluSc SINE Alu -187 122 1 2421 74 0 6 chrX 1233432 1233744 -175740396 + AluY SINE Alu 1 310 -1 31 26 0 0 chrX 1233850 1233888 -175740252 + AT_rich Low_complexity Low_complexity 1 38 0 965 147 0 0 chrX 1234605 1234748 -175739392 + U4 snRNA snRNA 2 144 -1 31 0 0 0 chrX 1234751 1234782 -175739358 + AT_rich Low_complexity Low_complexity 1 31 0 1297 167 10 68 chrX 1234792 1235103 -175739037 + AluJo SINE Alu 11 303 -9 2183 132 0 3 chrX 1235962 1236273 -175737867 - AluSx SINE Alu -2 310 1 2299 94 3 0 chrX 1236458 1236755 -175737385 + AluSp SINE Alu 5 302 -11 219 362 106 0 chrX 1236769 1236863 -175737277 + L2 LINE L2 3154 3257 -15 2487 44 0 10 chrX 1237466 1237762 -175736378 - AluY SINE Alu -17 294 2 1422 128 128 12 chrX 1238193 1238442 -175735698 - AluSg1 SINE Alu -11 298 21 2228 79 4 0 chrX 1238685 1238964 -175735176 + AluSg SINE Alu 1 280 -30 2187 107 7 0 chrX 1242420 1242711 -175731429 - AluSq SINE Alu -20 293 1 1174 223 20 46 chrX 1243547 1243942 -175730198 + L1ME1 LINE L1 5738 6122 -44 457 62 0 0 chrX 1244195 1244260 -175729880 + L1PB3 LINE L1 6082 6146 -8 187 75 0 50 chrX 1244375 1244415 -175729725 + (TATAA)n Simple_repeat Simple_repeat 3 40 0 276 355 64 35 chrX 1244418 1244762 -175729378 - L2 LINE L2 -739 2575 2222 2324 97 0 28 chrX 1245470 1245789 -175728351 - AluY SINE Alu -1 310 1 2228 79 4 0 chrX 1246127 1246406 -175727734 + AluSg SINE Alu 1 280 -30 2247 110 3 0 chrX 1249862 1250154 -175723986 - AluSp SINE Alu -20 293 1 499 192 111 0 chrX 1250221 1250320 -175723820 - FLAM_A SINE Alu -8 134 25 1911 87 45 42 chrX 1250717 1251005 -175723135 + AluY SINE Alu 1 289 -22 341 23 0 0 chrX 1252508 1252551 -175721589 - U3 snRNA snRNA -174 43 1 353 290 55 19 chrX 1253422 1253539 -175720601 + MER5A DNA MER1_type 14 130 -48 468 233 92 137 chrX 1254469 1254783 -175719357 + L2 LINE L2 2966 3265 -48 1423 123 22 148 chrX 1254790 1254916 -175719224 + AluYb8 SINE Alu 12 152 -161 2417 40 0 33 chrX 1254916 1255218 -175718922 + AluY SINE Alu 1 292 -19 1423 123 22 148 chrX 1255218 1255433 -175718707 + AluYb8 SINE Alu 152 313 0 23 0 0 0 chrX 1256316 1256339 -175717801 + AT_rich Low_complexity Low_complexity 1 23 0 849 158 0 0 chrX 1257024 1257151 -175716989 - FLAM_C SINE Alu -5 128 2 23 33 0 0 chrX 1257162 1257192 -175716948 + AT_rich Low_complexity Low_complexity 1 30 0 1094 109 0 0 chrX 1261829 1261985 -175712155 - AluSq SINE Alu -12 301 146 262 98 0 0 chrX 1261985 1262026 -175712114 - Alu SINE Alu -261 41 1 2055 129 3 0 chrX 1263951 1264246 -175709894 + AluSx SINE Alu 1 296 -16 1036 209 5 0 chrX 1264271 1264462 -175709678 + AluJo SINE Alu 6 197 -115 183 80 0 0 chrX 1264464 1264489 -175709651 + (A)n Simple_repeat Simple_repeat 1 25 0 203 211 211 0 chrX 1265664 1265716 -175708424 - L2 LINE L2 0 3313 3251 2392 88 3 0 chrX 1265878 1266184 -175707956 + AluSx SINE Alu 1 307 -5 2189 95 0 7 chrX 1266355 1266649 -175707491 - AluSq SINE Alu -21 292 1 540 180 72 0 chrX 1267464 1267575 -175706565 - MLT2B2 LTR ERVL -396 119 1 2195 101 3 3 chrX 1267583 1267881 -175706259 - AluSg SINE Alu -12 298 1 27 0 0 26 chrX 1268031 1268046 -175706094 + AT_rich Low_complexity Low_complexity 1 15 -22 1309 133 58 0 chrX 1268046 1268286 -175705854 - L1MA4 LINE L1 -11 6289 6036 27 0 0 26 chrX 1268286 1268308 -175705832 + AT_rich Low_complexity Low_complexity 15 37 0 2271 53 60 3 chrX 1268341 1268624 -175705516 - AluY SINE Alu -12 299 1 352 128 13 26 chrX 1268628 1268706 -175705434 - L1MA4 LINE L1 -249 6051 5975 278 130 0 0 chrX 1268706 1268752 -175705388 + L1 LINE L1 5193 5238 -908 613 139 11 2 chrX 1268839 1268963 -175705177 - L1MA4A LINE L1 -339 5966 5842 18888 87 2 10 chrX 1269126 1269737 -175704403 - L1PA7 LINE L1 -68 6086 5472 2075 135 3 0 chrX 1269737 1270034 -175704106 - AluSg1 SINE Alu -11 298 1 18888 87 2 10 chrX 1270034 1272853 -175701287 - L1PA7 LINE L1 -682 5472 2684 2340 86 7 7 chrX 1273009 1273312 -175700828 - AluSc SINE Alu -6 303 1 634 177 32 0 chrX 1273312 1273436 -175700704 - L1MC3 LINE L1 -1081 6704 6577 * 2260 187 11 2 chrX 1273433 1273866 -175700274 - L1MC3 LINE L1 -1098 6687 6251 196 337 30 20 chrX 1275124 1275225 -175698915 - L3 LINE CR1 -211 1366 1265 21 82 0 0 chrX 1275262 1275311 -175698829 + AT_rich Low_complexity Low_complexity 1 49 0 812 293 19 34 chrX 1275743 1276006 -175698134 + MIR SINE MIR 1 259 -3 2397 70 3 20 chrX 1276519 1276821 -175697319 - AluSp SINE Alu -16 297 1 1720 173 3 3 chrX 1277076 1277360 -175696780 + AluJo SINE Alu 13 296 -16 21 36 0 0 chrX 1279461 1279489 -175694651 + AT_rich Low_complexity Low_complexity 1 28 0 389 195 0 0 chrX 1279680 1279762 -175694378 - L1MA9 LINE L1 -22 6290 6209 1202 259 108 75 chrX 1280536 1281333 -175692807 - HAL1 LINE L1 -13 2494 1672 192 77 0 0 chrX 1281355 1281381 -175692759 + (T)n Simple_repeat Simple_repeat 1 26 0 381 311 39 34 chrX 1281409 1281766 -175692374 - HAL1 LINE L1 -1115 1392 1034 679 256 38 0 chrX 1281772 1281932 -175692208 + MLT1F1 LTR MaLR 395 560 -7 1698 185 14 0 chrX 1282325 1282612 -175691528 + AluJb SINE Alu 1 291 -21 29 28 0 0 chrX 1282784 1282820 -175691320 + AT_rich Low_complexity Low_complexity 1 36 0 646 178 0 0 chrX 1282820 1282921 -175691219 - U6 snRNA snRNA -6 101 1 479 303 106 14 chrX 1283116 1283324 -175690816 - MIR SINE MIR -15 247 21 1972 138 21 55 chrX 1283369 1283754 -175690386 + THE1C LTR MaLR 1 372 -3 407 276 33 62 chrX 1284327 1284602 -175689538 + L1ME3A LINE L1 5702 5968 -202 295 268 45 67 chrX 1284858 1285037 -175689103 - HAL1 LINE L1 0 2507 2333 42 20 0 0 chrX 1285037 1285086 -175689054 + AT_rich Low_complexity Low_complexity 1 49 0 727 124 62 9 chrX 1285087 1285200 -175688940 - FLAM_C SINE Alu -14 119 1 1104 267 93 30 chrX 1285200 1285740 -175688400 - HAL1 LINE L1 -160 2347 1774 257 286 118 0 chrX 1285742 1285861 -175688279 - L2 LINE L2 -5 3308 3176 1192 278 34 37 chrX 1286036 1286712 -175687428 - L2 LINE L2 -229 3084 2199 437 208 113 0 chrX 1287252 1287358 -175686782 - HAL1 LINE L1 -2384 123 6 345 333 50 33 chrX 1288143 1288263 -175685877 + L2 LINE L2 3122 3243 -29 378 312 74 72 chrX 1288674 1289065 -175685075 - HAL1 LINE L1 -2 2505 2114 865 263 107 12 chrX 1289195 1289541 -175684599 - L1ME4a LINE L1 -238 5883 5505 2427 87 0 0 chrX 1290017 1290317 -175683823 - AluSg SINE Alu -10 300 1 2202 119 0 7 chrX 1291289 1291599 -175682541 + AluSg SINE Alu 1 308 -2 259 303 0 34 chrX 1292075 1292164 -175681976 + L2 LINE L2 44 129 -3185 * 715 255 242 7 chrX 1292158 1292456 -175681684 + L2 LINE L2 2946 3313 0 746 360 22 0 chrX 1292677 1292988 -175681152 + HAL1 LINE L1 2 319 -2188 418 292 167 51 chrX 1293009 1293299 -175680841 + HAL1 LINE L1 436 772 -1735 1785 292 72 20 chrX 1293299 1293894 -175680246 + MLT2E LTR ERVL 1 626 -2 418 292 167 51 chrX 1293894 1293939 -175680201 + HAL1 LINE L1 772 810 -1697 1555 255 134 21 chrX 1293980 1294795 -175679345 + HAL1 LINE L1 967 1873 -634 568 233 12 6 chrX 1294810 1294982 -175679158 + (CATA)n Simple_repeat Simple_repeat 4 176 0 288 287 271 0 chrX 1295078 1295200 -175678940 + HAL1 LINE L1 621 775 -1732 317 262 19 10 chrX 1295269 1295372 -175678768 - L1MC4 LINE L1 -1328 6714 6611 23 0 0 0 chrX 1295405 1295428 -175678712 + AT_rich Low_complexity Low_complexity 1 23 0 836 314 66 39 chrX 1295892 1295909 -175678231 + HAL1 LINE L1 1468 1483 -1024 2168 112 0 3 chrX 1295909 1296241 -175677899 - AluSq SINE Alu 0 332 2 836 314 66 39 chrX 1296241 1296690 -175677450 + HAL1 LINE L1 1483 1948 -559 326 253 89 55 chrX 1296724 1296926 -175677214 + LTR33A LTR ERVL 3 211 -312 1803 181 13 0 chrX 1296933 1297236 -175676904 - AluJb SINE Alu -5 307 1 233 212 25 59 chrX 1298355 1298473 -175675667 + (TCTCTG)n Simple_repeat Simple_repeat 2 115 0 565 217 8 8 chrX 1300079 1300208 -175673932 + L1M4 LINE L1 5340 5468 -710 664 166 93 20 chrX 1300208 1300359 -175673781 - MLT1D LTR MaLR 0 505 344 * 781 191 42 24 chrX 1300348 1300516 -175673624 - MSTA LTR MaLR -43 385 215 21 0 0 0 chrX 1300605 1300626 -175673514 + AT_rich Low_complexity Low_complexity 1 21 0 2115 125 0 3 chrX 1300664 1300961 -175673179 + AluSg SINE Alu 1 296 -14 21 0 0 0 chrX 1301021 1301042 -175673098 + AT_rich Low_complexity Low_complexity 1 21 0 215 286 0 0 chrX 1302107 1302163 -175671977 - MIR SINE MIR -121 141 86 233 316 35 11 chrX 1302999 1303112 -175671028 - MIR SINE MIR -74 134 15 423 204 18 26 chrX 1304011 1304124 -175670016 + MER31A LTR ERV1 346 457 -28 2391 57 3 7 chrX 1304149 1304446 -175669694 - AluY SINE Alu -15 296 1 300 188 0 0 chrX 1304495 1304559 -175669581 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 357 248 0 0 chrX 1304618 1304731 -175669409 + (TA)n Simple_repeat Simple_repeat 2 114 0 453 259 54 32 chrX 1305113 1305298 -175668842 + MIR SINE MIR 68 256 -6 1867 181 3 3 chrX 1305626 1305935 -175668205 + AluJo SINE Alu 1 309 -3 2216 125 6 3 chrX 1306264 1306575 -175667565 - AluSx SINE Alu 0 312 1 890 125 0 0 chrX 1306626 1306762 -175667378 - L1PA16 LINE L1 -5 6161 6026 692 269 58 66 chrX 1306946 1307311 -175666829 - LTR16A1 LTR ERVL -45 412 51 181 62 0 94 chrX 1307499 1307531 -175666609 - MIR SINE MIR -5 257 229 2684 107 65 2 chrX 1307654 1308067 -175666073 - MLT2A2 LTR ERVL 0 453 15 2337 91 3 7 chrX 1308560 1308868 -175665272 + AluSq SINE Alu 1 307 -6 270 179 0 15 chrX 1308868 1308935 -175665205 - L1ME LINE L1 -2413 3667 3602 1541 188 15 4 chrX 1309003 1309274 -175664866 - AluJo SINE Alu -2 310 37 2207 131 0 0 chrX 1309300 1309597 -175664543 - AluSg SINE Alu -13 297 1 2996 253 63 59 chrX 1309597 1310051 -175664089 - L1ME LINE L1 -2581 3499 3048 2318 85 0 3 chrX 1310051 1310346 -175663794 - AluSg SINE Alu -16 294 1 1802 174 17 3 chrX 1310346 1310640 -175663500 - AluSx SINE Alu -14 298 1 2996 253 63 59 chrX 1310640 1310739 -175663401 - L1ME LINE L1 -3032 3048 2951 562 193 0 90 chrX 1310739 1310884 -175663256 - FLAM_C SINE Alu -1 132 1 2996 253 63 59 chrX 1310884 1310952 -175663188 - L1ME LINE L1 -3129 2951 2885 2149 128 3 0 chrX 1310952 1311248 -175662892 - AluSx SINE Alu -15 297 1 2996 253 63 59 chrX 1311248 1311787 -175662353 - L1ME LINE L1 -3195 2885 2350 646 209 8 8 chrX 1311787 1311916 -175662224 - FLAM_A SINE Alu -4 129 1 2996 253 63 59 chrX 1311916 1312178 -175661962 - L1ME LINE L1 -3730 2350 2091 2062 140 0 0 chrX 1312178 1312470 -175661670 - AluSg SINE Alu -18 292 1 2996 253 63 59 chrX 1312470 1313069 -175661071 - L1ME LINE L1 -3989 2091 1496 2050 136 67 43 chrX 1313069 1313116 -175661024 - MSTA LTR MaLR 0 428 384 1945 137 0 59 chrX 1313116 1313438 -175660702 + AluJb SINE Alu 6 308 -4 2050 136 67 43 chrX 1313438 1313808 -175660332 - MSTA LTR MaLR -44 384 1 2996 253 63 59 chrX 1313808 1314233 -175659907 - L1ME LINE L1 -4584 1496 1074 2458 65 0 0 chrX 1314233 1314527 -175659613 + AluY SINE Alu 1 294 -17 2996 253 63 59 chrX 1314527 1314970 -175659170 - L1ME LINE L1 -5006 1074 566 1040 289 63 47 chrX 1315524 1315578 -175658562 - L1ME LINE L1 -5553 517 465 1726 176 28 0 chrX 1315578 1315868 -175658272 - AluJb SINE Alu -14 298 1 1040 289 63 47 chrX 1315868 1316322 -175657818 - L1ME LINE L1 -5605 465 1 302 275 44 11 chrX 1316722 1316813 -175657327 - MIR SINE MIR -61 201 108 22 56 0 0 chrX 1317128 1317164 -175656976 + AT_rich Low_complexity Low_complexity 1 36 0 730 244 36 50 chrX 1317239 1317292 -175656848 + MER58A DNA MER1_type 6 58 -2362 495 87 0 0 chrX 1317292 1317361 -175656779 + (CTATT)n Simple_repeat Simple_repeat 3 71 0 730 244 36 50 chrX 1317361 1317397 -175656743 + MER58A DNA MER1_type 58 93 -2327 2480 50 3 0 chrX 1317397 1317699 -175656441 - AluY SINE Alu -8 303 1 730 244 36 50 chrX 1317699 1317829 -175656311 + MER58A DNA MER1_type 93 223 -1 2431 93 0 3 chrX 1318304 1318614 -175655526 - AluSx SINE Alu -3 309 1 1655 207 0 14 chrX 1318623 1318986 -175655154 + L1MA7 LINE L1 4727 5084 -1062 301 68 0 68 chrX 1318990 1319049 -175655091 + (TG)n Simple_repeat Simple_repeat 1 55 0 928 197 5 5 chrX 1319054 1319247 -175654893 - MER58 DNA MER1_type -2217 203 11 4091 149 22 61 chrX 1319247 1319306 -175654834 + L1MA7 LINE L1 5080 5140 -1151 1801 189 3 3 chrX 1319306 1319612 -175654528 + AluJo SINE Alu 1 306 -6 4091 149 22 61 chrX 1319612 1320158 -175653982 + L1MA7 LINE L1 5140 5626 -665 695 110 0 0 chrX 1320158 1320258 -175653882 + HY3 scRNA scRNA 1 100 -1 4091 149 22 61 chrX 1320258 1320782 -175653358 + L1MA7 LINE L1 5626 6169 -122 894 181 7 0 chrX 1320782 1320926 -175653214 + AluJb SINE Alu 134 278 -34 648 155 35 21 chrX 1320926 1320942 -175653198 + L1MA5 LINE L1 6155 6169 -131 375 23 0 0 chrX 1320942 1320986 -175653154 + (TA)n Simple_repeat Simple_repeat 2 45 0 648 155 35 21 chrX 1320986 1321111 -175653029 + L1MA5 LINE L1 6169 6298 -2 22 56 0 0 chrX 1321111 1321147 -175652993 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chrX 1321349 1321377 -175652763 + AT_rich Low_complexity Low_complexity 1 28 0 30 59 0 0 chrX 1321775 1321826 -175652314 + AT_rich Low_complexity Low_complexity 1 51 0 3770 169 9 28 chrX 1321938 1322089 -175652051 - L1M1 LINE L1 -677 5628 5476 3440 107 62 65 chrX 1322089 1322754 -175651386 + MER4A LTR ERV1 2 664 0 3770 169 9 28 chrX 1322754 1322876 -175651264 - L1M1 LINE L1 -829 5476 5353 1852 165 3 3 chrX 1322876 1323173 -175650967 - AluJb SINE Alu -15 297 1 3770 169 9 28 chrX 1323173 1324069 -175650071 - L1M1 LINE L1 -952 5353 4474 1190 201 5 18 chrX 1324873 1325092 -175649048 + MER20 DNA MER1_type 2 217 -2 1615 206 7 0 chrX 1325097 1325403 -175648737 + AluJo SINE Alu 1 308 -4 2381 101 0 0 chrX 1325804 1326111 -175648029 - AluSq SINE Alu -6 307 1 345 327 74 31 chrX 1326300 1326362 -175647778 + MIR SINE MIR 71 129 -133 459 0 0 0 chrX 1326362 1326413 -175647727 + (TA)n Simple_repeat Simple_repeat 2 52 0 345 327 74 31 chrX 1326413 1326512 -175647628 + MIR SINE MIR 129 239 -23 2413 97 3 0 chrX 1327148 1327456 -175646684 + AluSx SINE Alu 1 309 -3 639 259 47 19 chrX 1327578 1327790 -175646350 + HsTC2 DNA Tc2 1521 1738 -160 1050 191 57 0 chrX 1327819 1328013 -175646127 - AluJo SINE Alu -16 296 92 22 0 0 0 chrX 1328492 1328514 -175645626 + AT_rich Low_complexity Low_complexity 1 22 0 1738 201 61 27 chrX 1329420 1329862 -175644278 - LTR2B LTR ERV1 0 490 34 2665 104 60 29 chrX 1330274 1330821 -175643319 + MER4A LTR ERV1 1 663 -1 340 232 0 32 chrX 1330825 1330920 -175643220 + MLT1K LTR MaLR 346 437 -151 10372 160 25 36 chrX 1331271 1333529 -175640611 - L1P LINE L1 -3314 2832 600 5458 163 59 31 chrX 1333531 1334325 -175639815 - L1 LINE L1 -1653 4493 3723 423 0 0 0 chrX 1334325 1334372 -175639768 + (TG)n Simple_repeat Simple_repeat 2 48 0 5458 163 59 31 chrX 1334372 1334831 -175639309 - L1 LINE L1 -2423 3723 3199 1484 196 0 29 chrX 1334831 1335137 -175639003 - AluJb SINE Alu -4 308 12 5458 163 59 31 chrX 1335137 1335203 -175638937 - L1 LINE L1 -2947 3199 3136 941 204 12 0 chrX 1335204 1335376 -175638764 - AluJb SINE Alu -10 302 129 2348 101 0 25 chrX 1335487 1335805 -175638335 - AluY SINE Alu -1 310 1 656 311 144 3 chrX 1335924 1336223 -175637917 + MLT1J LTR MaLR 1 341 -170 2403 88 0 3 chrX 1336491 1336799 -175637341 + AluSx SINE Alu 1 307 -5 2210 120 0 0 chrX 1337099 1337400 -175636740 + AluSg SINE Alu 1 301 -9 2671 222 69 25 chrX 1337728 1338499 -175635641 - MER45B DNA AcHobo 0 1040 236 525 244 15 7 chrX 1338534 1338669 -175635471 - MER45B DNA AcHobo -900 140 5 570 279 113 33 chrX 1338673 1339215 -175634925 + L1MC5 LINE L1 7330 7914 -47 25 0 0 0 chrX 1339247 1339272 -175634868 + AT_rich Low_complexity Low_complexity 1 25 0 193 263 26 26 chrX 1340514 1340590 -175633550 - MIR SINE MIR 0 262 187 730 287 20 0 chrX 1340848 1341050 -175633090 - LTR16A LTR ERVL -12 438 233 331 290 81 0 chrX 1341291 1341477 -175632663 - L1MEc LINE L1 -3940 2456 2256 25 31 0 0 chrX 1341574 1341606 -175632534 + AT_rich Low_complexity Low_complexity 1 32 0 778 218 0 0 chrX 1341702 1341835 -175632305 + FLAM_A SINE Alu 1 133 0 449 259 57 69 chrX 1342110 1342372 -175631768 + MER20B DNA MER1_type 23 281 -502 782 222 96 9 chrX 1342472 1342702 -175631438 + MER20B DNA MER1_type 273 522 -261 24 0 0 0 chrX 1343968 1343992 -175630148 + AT_rich Low_complexity Low_complexity 1 24 0 2321 97 3 0 chrX 1344668 1344968 -175629172 - AluSx SINE Alu -6 306 6 248 383 58 8 chrX 1344970 1345090 -175629050 + L2 LINE L2 3147 3272 0 25 31 0 0 chrX 1345171 1345203 -175628937 + AT_rich Low_complexity Low_complexity 1 32 0 242 258 32 0 chrX 1345246 1345308 -175628832 - MIR SINE MIR -79 183 120 276 329 0 0 chrX 1345382 1345455 -175628685 - MIR SINE MIR -102 106 34 2340 38 41 10 chrX 1346326 1346618 -175627522 - AluY SINE Alu -10 301 1 200 59 29 0 chrX 1346984 1347018 -175627122 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 384 311 12 42 chrX 1347037 1347204 -175626936 - MER5A DNA MER1_type -11 178 17 2581 74 0 0 chrX 1347240 1347551 -175626589 + AluY SINE Alu 1 311 0 2392 101 0 0 chrX 1347822 1348129 -175626011 + AluSg SINE Alu 1 307 -3 714 230 35 71 chrX 1348604 1348734 -175625406 - MER58A DNA MER1_type -2197 223 90 2455 47 3 0 chrX 1348734 1349031 -175625109 + AluY SINE Alu 1 298 -13 714 230 35 71 chrX 1349031 1349072 -175625068 - MER58A DNA MER1_type -2330 90 49 495 87 0 0 chrX 1349072 1349141 -175624999 + (AATAG)n Simple_repeat Simple_repeat 3 71 0 714 230 35 71 chrX 1349141 1349194 -175624946 - MER58A DNA MER1_type -2371 49 6 22 56 0 0 chrX 1349269 1349305 -175624835 + AT_rich Low_complexity Low_complexity 1 36 0 302 275 44 11 chrX 1349620 1349711 -175624429 + MIR SINE MIR 108 201 -61 943 307 71 18 chrX 1350111 1350560 -175623580 + L1ME LINE L1 1 473 -5597 1084 171 11 0 chrX 1350565 1350741 -175623399 + AluJb SINE Alu 1 178 -134 1404 165 5 22 chrX 1552325 1552549 -175421591 + AluJo SINE Alu 1 220 -92 724 205 118 46 chrX 1552549 1552744 -175421396 + AluJo SINE Alu 86 294 -18 314 121 0 17 chrX 1552744 1552802 -175421338 + (GGA)n Simple_repeat Simple_repeat 1 57 0 472 313 166 22 chrX 1553256 1553611 -175420529 - L2 LINE L2 -2 3311 2906 1598 182 32 50 chrX 1553805 1554206 -175419934 + L1MB5 LINE L1 5667 6060 -114 256 61 0 0 chrX 1554210 1554243 -175419897 + U2 snRNA snRNA 1 33 -155 239 293 52 9 chrX 1554243 1554359 -175419781 + L1MB7 LINE L1 6049 6169 -15 188 257 15 125 chrX 1554952 1555088 -175419052 + MIR3 SINE MIR 37 157 -51 213 213 0 0 chrX 1555171 1555218 -175418922 + (CA)n Simple_repeat Simple_repeat 2 48 0 778 169 4 146 chrX 1555225 1555313 -175418827 - MER82 DNA MER2_type -218 435 336 1534 173 0 104 chrX 1555313 1555648 -175418492 + AluJo SINE Alu 1 300 -2 778 169 4 146 chrX 1555648 1555820 -175418320 - MER82 DNA MER2_type -317 336 212 2295 96 8 22 chrX 1555871 1556236 -175417904 + L1PB1 LINE L1 5712 6071 -80 692 179 19 13 chrX 1556262 1556418 -175417722 + L1MB3 LINE L1 6020 6176 -7 2591 71 0 0 chrX 1556725 1557036 -175417104 - AluY SINE Alu 0 311 1 1974 171 14 8 chrX 1557737 1558100 -175416040 - MLT1A1 LTR MaLR 0 365 1 2060 129 20 0 chrX 1558125 1558419 -175415721 + AluSx SINE Alu 1 300 -12 2237 97 0 13 chrX 1558419 1558717 -175415423 + AluSc SINE Alu 1 294 -15 2782 238 14 3 chrX 1559366 1559988 -175414152 - MER82 DNA MER2_type -1 652 24 602 271 95 70 chrX 1560458 1560511 -175413629 - MLT1D LTR MaLR 0 505 455 2467 138 19 0 chrX 1560511 1560570 -175413570 + L1PB1 LINE L1 5731 5787 -364 270 0 0 0 chrX 1560570 1560600 -175413540 + (CA)n Simple_repeat Simple_repeat 2 31 0 2467 138 19 0 chrX 1560600 1560953 -175413187 + L1PB1 LINE L1 5787 6151 0 602 271 95 70 chrX 1560953 1561330 -175412810 - MLT1D LTR MaLR -50 455 64 1364 181 55 43 chrX 1561336 1561684 -175412456 - MLT1A2 LTR MaLR 0 374 23 2119 125 36 22 chrX 1561689 1562048 -175412092 - THE1B LTR MaLR 0 364 1 1149 234 64 39 chrX 1563767 1564202 -175409938 + MLT1C LTR MaLR 22 467 0 1795 184 56 29 chrX 1565449 1565980 -175408160 + MLT2A2 LTR ERVL 1 554 0 255 103 0 0 chrX 1566443 1566482 -175407658 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1916 107 70 0 chrX 1567042 1567312 -175406828 - AluSx SINE Alu -21 291 3 688 228 82 30 chrX 1567418 1567531 -175406609 - L1MB7 LINE L1 -249 5935 5829 2369 123 76 27 chrX 1567531 1567939 -175406201 + MSTA LTR MaLR 1 428 0 688 228 82 30 chrX 1567939 1568057 -175406083 - L1MB7 LINE L1 -355 5829 5692 356 194 120 0 chrX 1568051 1568159 -175405981 + L1MB4 LINE L1 6035 6155 -25 * 2250 102 0 0 chrX 1568241 1568534 -175405606 + AluSx SINE Alu 7 299 -13 455 212 7 0 chrX 1568668 1568814 -175405326 + CT-rich Low_complexity Low_complexity 2 148 0 647 196 0 6 chrX 1568909 1569088 -175405052 + CT-rich Low_complexity Low_complexity 2 179 0 21 36 0 0 chrX 1569385 1569413 -175404727 + AT_rich Low_complexity Low_complexity 1 28 0 298 263 0 13 chrX 1570299 1570375 -175403765 + (CATA)n Simple_repeat Simple_repeat 4 78 0 385 247 6 22 chrX 1570375 1570557 -175403583 + (TA)n Simple_repeat Simple_repeat 1 179 0 196 200 10 40 chrX 1570628 1570728 -175403412 + (TA)n Simple_repeat Simple_repeat 1 97 0 323 211 0 84 chrX 1570739 1570834 -175403306 + L1MC4 LINE L1 6615 6701 -1341 454 220 14 24 chrX 1570878 1571179 -175402961 + (CATATA)n Simple_repeat Simple_repeat 1 297 0 291 140 0 0 chrX 1571281 1571331 -175402809 + (TATG)n Simple_repeat Simple_repeat 4 53 0 643 207 93 5 chrX 1572795 1572988 -175401152 - MER20 DNA MER1_type -9 210 1 428 35 17 0 chrX 1572992 1573050 -175401090 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 2099 128 30 41 chrX 1573052 1573420 -175400720 + THE1B LTR MaLR 1 364 0 473 161 39 13 chrX 1573420 1573575 -175400565 + (TAGA)n Simple_repeat Simple_repeat 3 161 0 811 198 51 42 chrX 1573609 1573826 -175400314 - MER20 DNA MER1_type 0 219 1 2024 150 0 6 chrX 1573994 1574308 -175399832 + AluSx SINE Alu 1 312 0 241 148 49 0 chrX 1575265 1575326 -175398814 + (CATA)n Simple_repeat Simple_repeat 4 67 0 1951 131 166 66 chrX 1577043 1577454 -175396686 + LTR47A LTR ERVL 1 452 0 240 314 98 49 chrX 1578782 1579046 -175395094 + L2 LINE L2 2364 2640 -674 408 191 0 0 chrX 1579296 1579385 -175394755 + (CAT)n Simple_repeat Simple_repeat 3 91 0 24 0 0 0 chrX 1579875 1579899 -175394241 + AT_rich Low_complexity Low_complexity 1 24 0 464 269 14 28 chrX 1580499 1580640 -175393500 - MIR SINE MIR -56 206 68 494 215 20 108 chrX 1580925 1581120 -175393020 - MER5B DNA MER1_type 0 178 1 253 228 33 11 chrX 1581529 1581621 -175392519 + (TA)n Simple_repeat Simple_repeat 2 95 0 284 217 14 0 chrX 1582331 1582400 -175391740 + MLT1J LTR MaLR 100 169 -342 663 209 11 6 chrX 1583916 1584093 -175390047 + GA-rich Low_complexity Low_complexity 3 180 0 28 91 0 0 chrX 1584378 1584455 -175389685 + AT_rich Low_complexity Low_complexity 1 77 0 484 262 17 17 chrX 1584735 1584907 -175389233 - L1ME LINE L1 -474 5647 5476 317 184 0 13 chrX 1584951 1585027 -175389113 + CT-rich Low_complexity Low_complexity 2 76 0 305 250 15 0 chrX 1585074 1585142 -175388998 - MER5B DNA MER1_type -109 69 1 337 202 0 21 chrX 1585389 1585483 -175388657 + CT-rich Low_complexity Low_complexity 1 92 0 1429 130 39 4 chrX 1585574 1585828 -175388312 - L1MA5A LINE L1 -6 6291 6029 1740 166 10 20 chrX 1586153 1586441 -175387699 + AluJo SINE Alu 1 287 -25 996 133 0 0 chrX 1586441 1586621 -175387519 + (TA)n Simple_repeat Simple_repeat 1 180 0 1706 105 201 10 chrX 1586719 1587032 -175387108 - THE1C LTR MaLR 0 375 3 340 172 0 0 chrX 1587907 1587965 -175386175 - MER63 DNA MER1_type -315 747 690 1363 91 0 0 chrX 1588661 1588859 -175385281 - L1PA14 LINE L1 -361 5800 5603 2342 83 0 93 chrX 1588859 1589255 -175384885 + L1PA14 LINE L1 5800 6159 -2 1744 184 7 3 chrX 1590061 1590366 -175383774 - AluJo SINE Alu -6 306 1 21 36 0 0 chrX 1592336 1592364 -175381776 + AT_rich Low_complexity Low_complexity 1 28 0 2172 140 0 6 chrX 1592441 1592755 -175381385 + AluSx SINE Alu 1 312 0 4949 129 19 8 chrX 1592755 1593589 -175380551 + L1PA15 LINE L1 5321 6163 -2 23 0 0 0 chrX 1593590 1593613 -175380527 + AT_rich Low_complexity Low_complexity 1 23 0 201 270 95 0 chrX 1593900 1593963 -175380177 - MIR SINE MIR -92 170 102 1026 196 117 56 chrX 1595021 1595363 -175378777 - MLT1A1 LTR MaLR -2 363 1 485 154 23 17 chrX 1595422 1595597 -175378543 + (TA)n Simple_repeat Simple_repeat 1 176 0 336 153 0 0 chrX 1595714 1595773 -175378367 - L1MC1 LINE L1 -484 5849 5791 637 193 8 0 chrX 1595780 1595899 -175378241 + L1MC1 LINE L1 6214 6333 0 3403 146 50 2 chrX 1597272 1597847 -175376293 + LTR26 LTR ERV1 1 603 0 638 164 103 0 chrX 1597997 1598113 -175376027 + MER5A DNA MER1_type 1 128 -61 513 106 12 12 chrX 1598115 1598200 -175375940 + THE1B LTR MaLR 280 364 0 3851 103 0 12 chrX 1599191 1599752 -175374388 - MER41A LTR ERV1 0 554 1 1473 150 33 57 chrX 1599752 1600085 -175374055 + L1MC1 LINE L1 6009 6333 0 266 225 38 0 chrX 1600096 1600176 -175373964 + L1M4 LINE L1 5815 5897 -287 875 124 58 0 chrX 1600177 1600314 -175373826 - LTR12 LTR ERV1 -234 480 336 472 101 130 0 chrX 1600314 1600383 -175373757 + AluJb SINE Alu 209 286 -26 1819 170 3 13 chrX 1600652 1600958 -175373182 - AluJo SINE Alu -9 303 1 33 0 0 0 chrX 1601740 1601773 -175372367 + AT_rich Low_complexity Low_complexity 1 33 0 1280 173 18 162 chrX 1601778 1602228 -175371912 - L1PA15 LINE L1 0 6165 5781 265 127 1 52 chrX 1602250 1602308 -175371832 + L1P2 LINE L1 5774 5828 -327 318 267 0 22 chrX 1602342 1602432 -175371708 - L1MC4 LINE L1 -1339 6703 6616 211 257 14 14 chrX 1602433 1602472 -175371668 + (TA)n Simple_repeat Simple_repeat 1 42 -32 571 113 0 0 chrX 1602472 1602552 -175371588 + MADE1 DNA Mariner 1 80 0 211 257 14 14 chrX 1602552 1602586 -175371554 + (TA)n Simple_repeat Simple_repeat 41 74 0 932 151 0 0 chrX 1602587 1602733 -175371407 - L1PA15 LINE L1 -368 5788 5643 606 262 12 0 chrX 1603196 1603368 -175370772 - MER96B DNA MER1_type? -243 174 1 180 176 0 0 chrX 1603452 1603486 -175370654 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1715 195 7 0 chrX 1603525 1603823 -175370317 - AluJo SINE Alu -12 300 1 831 187 0 0 chrX 1603837 1603971 -175370169 - AluJo SINE Alu -178 134 1 227 176 0 0 chrX 1603991 1604025 -175370115 + Tigger5 DNA MER2_type 2273 2306 -17 233 224 0 35 chrX 1604049 1604107 -175370033 + Tigger5 DNA MER2_type 1 56 -2267 * 321 206 14 14 chrX 1604075 1604148 -175369992 + Tigger5 DNA MER2_type 2251 2323 0 368 162 38 0 chrX 1604148 1604253 -175369887 + (TA)n Simple_repeat Simple_repeat 1 109 0 27 29 0 0 chrX 1604286 1604320 -175369820 + AT_rich Low_complexity Low_complexity 1 34 0 191 35 0 35 chrX 1604368 1604397 -175369743 + (TA)n Simple_repeat Simple_repeat 1 28 0 370 288 58 14 chrX 1604668 1604807 -175369333 + MER77 LTR ERV1 55 199 -406 1104 234 96 47 chrX 1604855 1605261 -175368879 + MER77 LTR ERV1 173 598 -7 375 105 0 0 chrX 1605453 1605510 -175368630 + (GA)n Simple_repeat Simple_repeat 2 58 0 1162 243 80 39 chrX 1607410 1607850 -175366290 - MLT1C LTR MaLR -8 459 2 552 219 73 35 chrX 1607861 1608141 -175365999 - MLT1D LTR MaLR -144 361 14 713 232 81 32 chrX 1608154 1608451 -175365689 - MLT1C LTR MaLR -122 345 24 1162 182 5 5 chrX 1608713 1608922 -175365218 - AluJo SINE Alu -4 308 100 1485 171 25 18 chrX 1608922 1609196 -175364944 + AluJo SINE Alu 24 299 -13 2098 119 36 7 chrX 1609416 1609719 -175364421 - AluSx SINE Alu 0 312 1 2097 145 0 0 chrX 1610522 1610832 -175363308 - AluSx SINE Alu -2 310 1 2417 66 3 7 chrX 1611129 1611432 -175362708 + AluY SINE Alu 1 302 -9 2387 139 58 0 chrX 1612431 1612775 -175361365 + THE1B LTR MaLR 1 364 0 1840 163 0 0 chrX 1613314 1613624 -175360516 - AluJb SINE Alu 0 310 1 1088 124 10 161 chrX 1614029 1614247 -175359893 - Tigger4(Zombi) DNA MER2_type -5 2726 2561 1454 204 25 0 chrX 1614247 1614527 -175359613 - AluJo SINE Alu -25 287 1 1088 124 10 161 chrX 1614527 1614599 -175359541 - Tigger4(Zombi) DNA MER2_type -170 2561 2480 1957 146 0 17 chrX 1614600 1614902 -175359238 + AluJb SINE Alu 1 297 -15 418 244 0 0 chrX 1614979 1615061 -175359079 - Tigger4(Zombi) DNA MER2_type -2649 82 1 4205 141 19 16 chrX 1615126 1615635 -175358505 + MER41B LTR ERV1 1 514 -121 2362 100 7 0 chrX 1615635 1615945 -175358195 - AluSx SINE Alu 0 312 1 4205 141 19 16 chrX 1615945 1616068 -175358072 + MER41B LTR ERV1 514 635 0 3587 111 61 23 chrX 1616626 1617196 -175356944 - MER4B LTR ERV1 -9 601 10 2496 200 28 48 chrX 1618124 1618689 -175355451 - MLT2B3 LTR ERVL 0 554 1 238 207 0 52 chrX 1618689 1618747 -175355393 + MLT1A1 LTR MaLR 308 362 -3 532 165 0 0 chrX 1618888 1618979 -175355161 + L1PB4 LINE L1 6061 6151 -5 889 223 5 11 chrX 1619372 1619560 -175354580 - MLT1A1 LTR MaLR -17 348 162 515 155 10 0 chrX 1619562 1619665 -175354475 + GA-rich Low_complexity Low_complexity 2 105 0 22 0 0 0 chrX 1620052 1620074 -175354066 + AT_rich Low_complexity Low_complexity 1 22 0 259 77 0 0 chrX 1621086 1621117 -175353023 - MADE1 DNA Mariner 0 80 47 2064 139 0 0 chrX 1621117 1621419 -175352721 + AluSx SINE Alu 1 302 -10 931 211 70 26 chrX 1621421 1621706 -175352434 + MSTD LTR MaLR 48 389 -7 1762 173 0 19 chrX 1622050 1622357 -175351783 - AluJo SINE Alu -11 301 1 213 94 0 0 chrX 1622583 1622615 -175351525 + (TAA)n Simple_repeat Simple_repeat 2 33 0 43 71 0 0 chrX 1622620 1622705 -175351435 + AT_rich Low_complexity Low_complexity 1 85 0 810 158 0 0 chrX 1622745 1622865 -175351275 + FLAM_C SINE Alu 6 125 -18 4523 97 8 0 chrX 1623162 1623749 -175350391 - L1PA10 LINE L1 -4 6164 5573 257 211 42 28 chrX 1623756 1623827 -175350313 - MLT1E3 LTR MaLR -8 616 545 1776 135 8 15 chrX 1624353 1624670 -175349470 + Tigger2 DNA MER2_type 1 2609 -109 216 202 10 40 chrX 1624741 1624840 -175349300 + (TATAA)n Simple_repeat Simple_repeat 2 97 0 182 123 27 55 chrX 1624882 1624955 -175349185 + (TATAA)n Simple_repeat Simple_repeat 5 75 0 224 288 34 0 chrX 1624979 1625125 -175349015 + (TA)n Simple_repeat Simple_repeat 1 151 0 544 213 9 19 chrX 1625126 1625234 -175348906 + Tigger2 DNA MER2_type 2601 2707 -11 22 80 0 0 chrX 1625234 1625284 -175348856 + AT_rich Low_complexity Low_complexity 1 50 0 444 305 41 15 chrX 1625419 1625616 -175348524 + MLT1H LTR MaLR 87 288 -261 514 249 154 6 chrX 1625643 1625812 -175348328 + MLT1H LTR MaLR 356 549 0 430 260 26 42 chrX 1625879 1626071 -175348069 + HAL1 LINE L1 1486 1674 -833 24 109 0 0 chrX 1626625 1626726 -175347414 + AT_rich Low_complexity Low_complexity 1 101 0 828 173 0 0 chrX 1627659 1627786 -175346354 + FLAM_C SINE Alu 1 127 -16 1919 166 0 0 chrX 1628305 1628600 -175345540 - AluJb SINE Alu -15 297 3 2565 121 20 3 chrX 1628630 1628986 -175345154 + THE1B LTR MaLR 1 362 -2 1781 174 0 0 chrX 1630507 1630788 -175343352 - AluJb SINE Alu -23 289 9 1795 147 0 53 chrX 1631919 1632239 -175341901 - AluJo SINE Alu -9 303 1 1526 172 36 7 chrX 1632675 1632954 -175341186 + MER2 DNA MER2_type 28 314 -31 1274 186 17 0 chrX 1633017 1633253 -175340887 + AluJb SINE Alu 52 291 -21 234 179 0 0 chrX 1634386 1634442 -175339698 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 775 140 22 27 chrX 1634464 1634799 -175339341 + (TCTA)n Simple_repeat Simple_repeat 1 333 0 235 288 0 0 chrX 1635068 1635127 -175339013 + LTR16A LTR ERVL 385 443 -7 1827 160 3 3 chrX 1635613 1635907 -175338233 - AluJo SINE Alu -18 294 1 233 232 18 0 chrX 1635994 1636050 -175338090 - L1ME3A LINE L1 -114 6056 6000 1675 169 3 40 chrX 1636632 1636772 -175337368 - AluJo SINE Alu -20 292 148 2869 105 47 0 chrX 1636772 1637181 -175336959 + MSTA LTR MaLR 1 428 0 1675 169 3 40 chrX 1637181 1637342 -175336798 - AluJo SINE Alu -164 148 2 2302 121 23 69 chrX 1637715 1638152 -175335988 + L1PB4 LINE L1 5605 6021 -135 348 155 48 0 chrX 1638275 1638359 -175335781 + CT-rich Low_complexity Low_complexity 4 91 0 532 215 35 9 chrX 1638387 1638943 -175335197 + CT-rich Low_complexity Low_complexity 1 570 0 1801 185 91 8 chrX 1639581 1639964 -175334176 - MLT1D LTR MaLR -90 415 1 236 81 54 0 chrX 1639965 1640002 -175334138 - MLT1D LTR MaLR -455 50 12 277 188 42 0 chrX 1640010 1640058 -175334082 - MLT1D LTR MaLR -455 50 1 308 125 42 0 chrX 1640059 1640107 -175334033 - MLT1D LTR MaLR -455 50 1 1276 246 58 87 chrX 1640219 1640517 -175333623 + MER77 LTR ERV1 55 302 -303 2556 148 46 5 chrX 1640517 1640928 -175333212 + MSTA LTR MaLR 1 428 0 1276 246 58 87 chrX 1640928 1641216 -175332924 + MER77 LTR ERV1 302 597 -8 1642 173 10 33 chrX 1641348 1641830 -175332310 + AluJo SINE Alu 6 312 0 985 90 0 34 chrX 1641854 1642032 -175332108 + (GGAA)n Simple_repeat Simple_repeat 2 173 0 1861 175 9 62 chrX 1642389 1642765 -175331375 + L1MB8 LINE L1 5773 6126 -52 1618 195 30 0 chrX 1642765 1643062 -175331078 + AluJo SINE Alu 1 306 -6 1861 175 9 62 chrX 1643062 1643107 -175331033 + L1MB8 LINE L1 6126 6172 -6 722 242 6 0 chrX 1644100 1644257 -175329883 - L1PB4 LINE L1 -5 6151 5994 1589 161 56 7 chrX 1644391 1644677 -175329463 - MLT1A1 LTR MaLR -2 363 64 1964 174 17 62 chrX 1644723 1645126 -175329014 - MLT1B LTR MaLR -3 387 3 194 121 30 0 chrX 1645627 1645660 -175328480 + (CA)n Simple_repeat Simple_repeat 1 34 0 1884 148 13 10 chrX 1645907 1646212 -175327928 - AluJo SINE Alu -6 306 1 2525 120 3 0 chrX 1646234 1646600 -175327540 - L1PB4 LINE L1 0 6156 5790 1120 127 6 0 chrX 1646600 1646758 -175327382 + THE1B LTR MaLR 3 161 -203 8822 57 16 1 chrX 1646758 1648627 -175325513 - L1PA6 LINE L1 -4 6150 4287 1976 43 30 0 chrX 1648628 1648863 -175325277 + L1PA6 LINE L1 4045 4286 -1860 1141 115 72 48 chrX 1648863 1649071 -175325069 + THE1B LTR MaLR 152 364 0 1298 119 12 27 chrX 1649071 1649323 -175324817 - L1PB4 LINE L1 -360 5796 5550 1253 219 32 69 chrX 1649907 1649980 -175324160 + MLT1A1 LTR MaLR 1 75 -290 2028 117 23 94 chrX 1649980 1650373 -175323767 + MLT1A1 LTR MaLR 1 365 0 1253 219 32 69 chrX 1650373 1650678 -175323462 + MLT1A1 LTR MaLR 75 365 0 2121 156 35 20 chrX 1650854 1651043 -175323097 + L1MA7 LINE L1 5889 6074 -217 2363 129 116 13 chrX 1651043 1651431 -175322709 - MSTA LTR MaLR 0 428 1 2121 156 35 20 chrX 1651431 1651638 -175322502 + L1MA7 LINE L1 6074 6291 0 885 147 27 7 chrX 1652110 1652260 -175321880 - L1MA4 LINE L1 -302 5998 5846 586 258 113 36 chrX 1652260 1652589 -175321551 + MER20B DNA MER1_type 292 645 -138 398 171 0 0 chrX 1652731 1652801 -175321339 + L1PB4 LINE L1 6079 6148 -8 950 63 39 16 chrX 1652805 1652954 -175321186 + L1PA10 LINE L1 6039 6168 0 510 279 63 82 chrX 1652973 1653343 -175320797 - L1ME3A LINE L1 -248 5922 5579 2161 110 7 0 chrX 1653343 1653635 -175320505 + AluSx SINE Alu 1 294 -18 510 279 63 82 chrX 1653635 1653861 -175320279 - L1ME3A LINE L1 -591 5579 5350 509 254 117 64 chrX 1653905 1654298 -175319842 - L1ME3A LINE L1 -867 5279 4866 282 379 11 32 chrX 1654337 1654527 -175319613 + LTR16C LTR ERVL 73 258 -233 1210 213 54 57 chrX 1654587 1654972 -175319168 - MLT1B LTR MaLR 0 467 4 524 124 0 157 chrX 1655380 1655426 -175318714 + Tigger5 DNA MER2_type 2222 2239 -84 1869 166 16 3 chrX 1655426 1655734 -175318406 - AluJo SINE Alu 0 312 1 524 124 0 157 chrX 1655734 1655808 -175318332 + Tigger5 DNA MER2_type 2239 2323 0 1406 137 5 0 chrX 1656447 1656666 -175317474 - MLT1B LTR MaLR -12 378 159 1249 172 5 9 chrX 1656667 1656902 -175317238 - MLT1B LTR MaLR 0 396 158 1397 225 30 48 chrX 1656904 1657302 -175316838 - MLT1B LTR MaLR -1 395 1 574 213 22 7 chrX 1657667 1658215 -175315925 + GA-rich Low_complexity Low_complexity 1 556 0 236 374 0 0 chrX 1658216 1658299 -175315841 + A-rich Low_complexity Low_complexity 4 86 0 274 132 0 0 chrX 1658550 1658588 -175315552 - MER20 DNA MER1_type 0 219 182 409 105 0 0 chrX 1658589 1658646 -175315494 - Alu SINE Alu -16 296 240 2402 145 3 3 chrX 1658733 1659092 -175315048 - THE1B LTR MaLR 0 364 6 4149 153 15 44 chrX 1659092 1659496 -175314644 + LTR62 LTR ERVK 3 378 -341 1629 167 3 44 chrX 1659496 1659813 -175314327 - AluJb SINE Alu -8 304 1 4149 153 15 44 chrX 1659813 1660142 -175313998 + LTR62 LTR ERVK 378 715 -4 2825 178 10 2 chrX 1660841 1661335 -175312805 - L1MB3 LINE L1 0 6183 5686 677 183 11 22 chrX 1661690 1661870 -175312270 + CT-rich Low_complexity Low_complexity 3 180 0 447 166 36 22 chrX 1661886 1662025 -175312115 + CT-rich Low_complexity Low_complexity 1 141 0 414 79 0 16 chrX 1662410 1662473 -175311667 - L1P4 LINE L1 -671 5495 5434 329 209 91 0 chrX 1662670 1662780 -175311360 + L1PA15 LINE L1 5196 5315 -831 564 231 103 15 chrX 1662780 1662983 -175311157 - THE1C LTR MaLR 0 375 155 795 148 56 14 chrX 1663104 1663246 -175310894 - THE1C LTR MaLR -227 148 1 4565 119 1 35 chrX 1663247 1663963 -175310177 + L1PA15 LINE L1 5312 6003 -162 3231 86 36 2 chrX 1663955 1664396 -175309744 - L1PA13 LINE L1 -25 6138 5683 * 2157 123 0 0 chrX 1665226 1665511 -175308629 - AluSx SINE Alu -17 295 11 357 109 0 0 chrX 1666760 1666815 -175307325 + (TC)n Simple_repeat Simple_repeat 2 56 0 1083 236 96 47 chrX 1667007 1667413 -175306727 - MER77 LTR ERV1 -7 598 173 370 288 58 14 chrX 1667461 1667600 -175306540 - MER77 LTR ERV1 -406 199 55 191 35 0 35 chrX 1667871 1667900 -175306240 + (TA)n Simple_repeat Simple_repeat 1 28 0 27 29 0 0 chrX 1667948 1667982 -175306158 + AT_rich Low_complexity Low_complexity 1 34 0 440 150 35 0 chrX 1668015 1668128 -175306012 + (TA)n Simple_repeat Simple_repeat 1 117 0 321 206 14 14 chrX 1668128 1668201 -175305939 - Tigger5 DNA MER2_type 0 2323 2251 233 224 0 35 chrX 1668169 1668227 -175305913 - Tigger5 DNA MER2_type -2267 56 1 * 227 176 0 0 chrX 1668251 1668285 -175305855 - Tigger5 DNA MER2_type -17 2306 2273 831 187 0 0 chrX 1668305 1668439 -175305701 + AluJo SINE Alu 1 134 -178 1715 195 7 0 chrX 1668453 1668751 -175305389 + AluJo SINE Alu 1 300 -12 180 176 0 0 chrX 1668790 1668824 -175305316 + (CATA)n Simple_repeat Simple_repeat 3 36 0 606 262 12 0 chrX 1668908 1669080 -175305060 + MER96B DNA MER1_type? 1 174 -243 932 151 0 0 chrX 1669543 1669689 -175304451 + L1PA15 LINE L1 5643 5788 -368 211 257 14 14 chrX 1669690 1669724 -175304416 + (TA)n Simple_repeat Simple_repeat 1 34 -40 571 113 0 0 chrX 1669724 1669804 -175304336 - MADE1 DNA Mariner 0 80 1 211 257 14 14 chrX 1669804 1669843 -175304297 + (TA)n Simple_repeat Simple_repeat 33 74 0 318 267 0 22 chrX 1669844 1669934 -175304206 + L1MC4 LINE L1 6616 6703 -1339 265 127 1 52 chrX 1669968 1670026 -175304114 - L1P2 LINE L1 -327 5828 5774 1280 173 18 162 chrX 1670048 1670498 -175303642 + L1PA15 LINE L1 5781 6165 0 33 0 0 0 chrX 1670503 1670536 -175303604 + AT_rich Low_complexity Low_complexity 1 33 0 1787 154 20 29 chrX 1671318 1671624 -175302516 + AluJo SINE Alu 1 303 -9 472 101 130 0 chrX 1671893 1671962 -175302178 - AluJb SINE Alu -26 286 209 875 124 58 0 chrX 1671962 1672099 -175302041 + LTR12 LTR ERV1 336 480 -234 266 225 38 0 chrX 1672100 1672180 -175301960 - L1M4 LINE L1 -287 5897 5815 1633 150 33 57 chrX 1672191 1672524 -175301616 - L1MC1 LINE L1 0 6333 6009 4147 113 0 11 chrX 1672524 1673084 -175301056 + MER41A LTR ERV1 1 554 0 2337 116 42 33 chrX 1674076 1674437 -175299703 - THE1B LTR MaLR 0 364 1 497 193 28 0 chrX 1674700 1674845 -175299295 + (TA)n Simple_repeat Simple_repeat 1 149 0 719 205 22 32 chrX 1674853 1674871 -175299269 - MLT1B LTR MaLR -109 358 341 2265 118 29 50 chrX 1674871 1675254 -175298886 - THE1C LTR MaLR 0 375 1 719 205 22 32 chrX 1675254 1675420 -175298720 - MLT1B LTR MaLR -126 341 176 813 178 0 22 chrX 1675425 1675560 -175298580 - FLAM_C SINE Alu -10 133 2 751 212 11 38 chrX 1675560 1675744 -175298396 - MLT1B LTR MaLR -210 180 2 1149 116 0 0 chrX 1676107 1676262 -175297878 - AluSg/x SINE Alu -17 295 141 2256 90 0 29 chrX 1676265 1676577 -175297563 - AluSx SINE Alu -9 303 1 1695 182 3 35 chrX 1676684 1677003 -175297137 - AluJo SINE Alu -3 309 1 1916 167 0 0 chrX 1677320 1677613 -175296527 + AluJo SINE Alu 1 293 -19 2081 141 3 0 chrX 1677912 1678211 -175295929 + AluSx SINE Alu 1 300 -12 189 0 0 0 chrX 1678409 1678430 -175295710 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1498 169 63 11 chrX 1678610 1678894 -175295246 - AluJo SINE Alu -11 301 3 801 180 0 22 chrX 1678902 1679041 -175295099 - FLAM_C SINE Alu 0 143 8 224 322 76 34 chrX 1681897 1682015 -175292125 - MIR3 SINE MIR -3 205 83 1822 176 0 28 chrX 1682125 1682444 -175291696 + AluJo SINE Alu 1 310 -2 1993 152 0 0 chrX 1682559 1682869 -175291271 - AluSx SINE Alu -2 310 1 216 184 0 0 chrX 1682952 1683001 -175291139 + (TG)n Simple_repeat Simple_repeat 1 49 0 31 26 0 0 chrX 1683571 1683609 -175290531 + AT_rich Low_complexity Low_complexity 1 38 0 1594 161 4 11 chrX 1683621 1683881 -175290259 - AluJb SINE Alu -54 258 1 21 0 0 0 chrX 1683882 1683903 -175290237 + AT_rich Low_complexity Low_complexity 1 21 0 832 171 0 36 chrX 1684028 1684168 -175289972 + AluJb SINE Alu 1 135 -177 1681 168 10 17 chrX 1684168 1684460 -175289680 + AluJb SINE Alu 1 290 -22 2379 103 3 0 chrX 1684828 1685130 -175289010 + AluSq SINE Alu 1 303 -10 1034 145 54 0 chrX 1685130 1685296 -175288844 + AluSq SINE Alu 134 308 -5 1198 130 12 0 chrX 1685391 1685560 -175288580 + AluSg/x SINE Alu 132 302 -10 938 142 25 12 chrX 1686181 1686343 -175287797 - FRAM SINE Alu -13 163 1 180 0 0 0 chrX 1686726 1686746 -175287394 + (TA)n Simple_repeat Simple_repeat 1 20 0 2408 82 0 0 chrX 1686836 1687127 -175287013 - AluSx SINE Alu -8 304 14 4654 79 92 0 chrX 1687446 1688078 -175286062 - LTR8 LTR ERV1 -1 690 1 2687 116 83 2 chrX 1688596 1688992 -175285148 + MSTA LTR MaLR 1 428 0 2092 128 0 0 chrX 1689097 1689387 -175284753 + AluSx SINE Alu 1 290 -22 2265 92 0 3 chrX 1689852 1690144 -175283996 + AluSc SINE Alu 1 291 -18 21 0 0 0 chrX 1690144 1690165 -175283975 + AT_rich Low_complexity Low_complexity 1 21 0 2124 137 0 3 chrX 1690232 1690538 -175283602 - AluSx SINE Alu -4 308 4 2058 71 0 8 chrX 1691101 1691356 -175282784 + AluSq SINE Alu 1 253 -60 919 182 18 0 chrX 1691356 1691521 -175282619 + AluJb SINE Alu 145 312 0 904 126 0 14 chrX 1692030 1692173 -175281967 - FRAM SINE Alu -3 173 33 29 0 0 0 chrX 1692519 1692548 -175281592 + AT_rich Low_complexity Low_complexity 1 29 0 211 237 40 45 chrX 1692804 1692981 -175281159 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 * 393 203 38 30 chrX 1692906 1693276 -175280864 + (TA)n Simple_repeat Simple_repeat 1 372 0 738 231 40 5 chrX 1693755 1693954 -175280186 + MER20 DNA MER1_type 7 212 -7 224 256 33 44 chrX 1694441 1694621 -175279519 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 222 192 62 27 chrX 1694556 1694702 -175279438 + (TA)n Simple_repeat Simple_repeat 1 151 0 * 230 259 25 49 chrX 1694697 1694859 -175279281 + (TATAA)n Simple_repeat Simple_repeat 5 162 0 210 241 59 6 chrX 1694945 1695115 -175279025 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 328 166 44 61 chrX 1695049 1695230 -175278910 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 1081 146 45 10 chrX 1695523 1695722 -175278418 - L1MB5 LINE L1 -11 6163 5958 617 246 6 18 chrX 1695728 1695899 -175278241 - L1MB5 LINE L1 -393 5781 5613 1913 164 3 0 chrX 1695925 1696218 -175277922 + AluJb SINE Alu 1 294 -18 185 217 87 76 chrX 1696381 1696473 -175277667 + L2 LINE L2 942 1034 -2280 726 223 113 87 chrX 1696880 1697373 -175276767 - MER34C LTR ERV1 -75 490 5 242 156 44 22 chrX 1697626 1697671 -175276469 + MLT1C LTR MaLR 130 175 -215 885 142 0 47 chrX 1697675 1697823 -175276317 + AluJb SINE Alu 1 141 -171 1207 225 30 27 chrX 1697850 1698148 -175275992 + MLT1C LTR MaLR 169 467 0 21 0 0 0 chrX 1698349 1698370 -175275770 + AT_rich Low_complexity Low_complexity 1 21 0 3736 120 24 0 chrX 1698453 1698987 -175275153 - L1PB4 LINE L1 0 6156 5610 2423 87 0 13 chrX 1699159 1699469 -175274671 - AluSq SINE Alu -5 308 3 23 0 0 0 chrX 1700094 1700117 -175274023 + AT_rich Low_complexity Low_complexity 1 23 0 206 174 0 22 chrX 1700304 1700350 -175273790 + A-rich Low_complexity Low_complexity 3 47 0 357 145 0 0 chrX 1700388 1700464 -175273676 + (TG)n Simple_repeat Simple_repeat 2 77 0 1869 148 39 7 chrX 1701224 1701507 -175272633 + AluJo SINE Alu 2 293 -19 911 137 6 22 chrX 1701514 1701697 -175272443 + (GAA)n Simple_repeat Simple_repeat 1 180 0 225 0 0 0 chrX 1701743 1701768 -175272372 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 731 313 47 49 chrX 1702188 1702702 -175271438 - MER34 LTR ERV1 -29 513 1 395 185 31 17 chrX 1702827 1703201 -175270939 + GA-rich Low_complexity Low_complexity 1 379 0 225 254 48 0 chrX 1703212 1703275 -175270865 + GA-rich Low_complexity Low_complexity 3 68 0 231 114 0 0 chrX 1703282 1703317 -175270823 + (GA)n Simple_repeat Simple_repeat 1 35 0 374 100 17 0 chrX 1703463 1703523 -175270617 - MER4E LTR ERV1 0 779 719 2600 91 0 6 chrX 1703523 1703875 -175270265 - MER41A LTR ERV1 0 554 205 1006 143 20 31 chrX 1703858 1704054 -175270086 + MER39B LTR ERV1 76 269 -384 * 556 177 10 0 chrX 1704056 1704152 -175269988 + AluJ/FLAM SINE Alu 2 98 -214 369 190 10 47 chrX 1705419 1705691 -175268449 + CT-rich Low_complexity Low_complexity 1 261 0 899 143 0 0 chrX 1705698 1705831 -175268309 - FLAM_C SINE Alu 0 133 1 1070 153 49 0 chrX 1705831 1706034 -175268106 + MER65A LTR ERV1 233 445 0 1883 160 13 7 chrX 1707267 1707574 -175266566 - AluJb SINE Alu -3 309 1 324 127 0 0 chrX 1707628 1707683 -175266457 + (TG)n Simple_repeat Simple_repeat 2 56 0 616 176 43 152 chrX 1707704 1707914 -175266226 + MER39B LTR ERV1 65 251 -402 2195 113 0 0 chrX 1708730 1709058 -175265082 - AluSx SINE Alu 0 328 1 389 174 12 23 chrX 1710079 1710165 -175263975 + L1MC2 LINE L1 6084 6168 -176 650 116 0 11 chrX 1710165 1710260 -175263880 + MER4A LTR ERV1 1 94 -570 1616 98 61 292 chrX 1710260 1710985 -175263155 + LTR12 LTR ERV1 2 558 -156 2250 141 18 39 chrX 1710997 1711513 -175262627 + MER4A LTR ERV1 90 662 -2 265 216 0 0 chrX 1711515 1711566 -175262574 + L1MC2 LINE L1 6165 6215 -129 3448 110 15 68 chrX 1711591 1711622 -175262518 + MER4B LTR ERV1 1 32 -747 2197 113 3 3 chrX 1711622 1711922 -175262218 + AluSx SINE Alu 1 300 -12 3448 110 15 68 chrX 1711922 1712452 -175261688 + MER4B LTR ERV1 32 694 -85 4078 141 5 11 chrX 1712452 1713091 -175261049 + MER41B LTR ERV1 1 635 0 3448 110 15 68 chrX 1713091 1713173 -175260967 + MER4B LTR ERV1 694 779 0 403 122 73 0 chrX 1713177 1713259 -175260881 + L1MC2 LINE L1 6255 6342 -2 255 109 46 45 chrX 1714394 1714452 -175259688 - MLT2B2 LTR ERVL 0 515 475 1819 192 73 84 chrX 1714455 1715001 -175259139 + LTR64 LTR ERVK 1 540 -18 735 177 0 48 chrX 1715003 1715150 -175258990 - FLAM_C SINE Alu -2 141 2 311 81 40 14 chrX 1715168 1715242 -175258898 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 1131 179 25 0 chrX 1715491 1715692 -175258448 + MLT2C1 LTR ERVL 1 206 -191 1419 144 0 0 chrX 1715692 1715907 -175258233 + AluSg/x SINE Alu 85 299 -13 1377 160 43 19 chrX 1715907 1716163 -175257977 + MLT2C2 LTR ERVL 198 459 -5 3598 58 9 0 chrX 1716656 1717088 -175257052 - MLT2A1 LTR ERVL -8 436 1 2205 91 3 0 chrX 1717198 1717483 -175256657 + AluY SINE Alu 1 286 -25 32 0 0 0 chrX 1717483 1717515 -175256625 + AT_rich Low_complexity Low_complexity 1 32 0 1811 80 4 4 chrX 1717699 1717925 -175256215 - AluSc SINE Alu -83 226 1 1459 185 45 24 chrX 1718426 1718713 -175255427 - AluJb SINE Alu -19 293 1 200 122 0 49 chrX 1720067 1720108 -175254032 + (TTC)n Simple_repeat Simple_repeat 1 39 0 1044 220 46 85 chrX 1720726 1720908 -175253232 - MER39 LTR ERV1 0 707 520 1716 157 3 21 chrX 1720908 1721195 -175252945 - AluSx SINE Alu -30 282 1 1044 220 46 85 chrX 1721195 1721460 -175252680 - MER39 LTR ERV1 -187 520 150 226 36 0 0 chrX 1721577 1721605 -175252535 + Alu SINE Alu 74 101 -201 248 222 4 0 chrX 1721682 1721741 -175252399 - MER39 LTR ERV1 -584 60 1 207 0 0 0 chrX 1722106 1722129 -175252011 + (TTTC)n Simple_repeat Simple_repeat 1 23 0 721 199 0 0 chrX 1722129 1722260 -175251880 - FRAM SINE Alu -1 175 45 280 257 14 0 chrX 1722262 1722332 -175251808 - MER34C LTR ERV1 -491 94 24 1063 247 0 0 chrX 1722452 1722675 -175251465 + MER58A DNA MER1_type 2 224 0 1914 179 65 3 chrX 1722998 1723367 -175250773 + MER89 LTR ERV1 168 559 0 1902 166 28 8 chrX 1724150 1724506 -175249634 - MLT1A1 LTR MaLR -2 363 1 644 205 0 0 chrX 1724833 1724945 -175249195 + FLAM_A SINE Alu 6 117 -25 1168 0 38 13 chrX 1724946 1725105 -175249035 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 392 353 95 17 chrX 1725235 1725530 -175248610 - L1MC4a LINE L1 -1879 5929 5612 2757 134 5 2 chrX 1726464 1726867 -175247273 + MSTA-int LTR MaLR 1248 1651 0 2488 133 70 0 chrX 1726869 1727267 -175246873 + MSTA LTR MaLR 3 428 0 3836 99 4 4 chrX 1727780 1728315 -175245825 - L1PA11 LINE L1 -1 6173 5639 1644 163 41 24 chrX 1729285 1729404 -175244736 + AluJb SINE Alu 1 116 -196 303 49 0 0 chrX 1729404 1729445 -175244695 + (CA)n Simple_repeat Simple_repeat 2 42 0 1644 163 41 24 chrX 1729445 1729619 -175244521 + AluJb SINE Alu 116 299 -13 267 257 36 36 chrX 1730266 1730406 -175243734 + (TA)n Simple_repeat Simple_repeat 1 140 0 2651 46 0 0 chrX 1730712 1731019 -175243121 - AluY SINE Alu -4 307 1 1752 149 57 20 chrX 1731022 1731323 -175242817 - AluJb SINE Alu 0 312 1 2163 127 0 7 chrX 1732039 1732346 -175241794 - AluSx SINE Alu -7 305 1 1751 174 7 3 chrX 1733028 1733326 -175240814 + AluJo SINE Alu 1 299 -13 425 237 59 25 chrX 1733552 1733670 -175240470 + MLT1J LTR MaLR 226 347 -164 1774 166 39 3 chrX 1733759 1734043 -175240097 - AluJo SINE Alu -18 294 1 1934 147 0 20 chrX 1734443 1734735 -175239405 + AluJo SINE Alu 1 286 -26 1769 165 3 7 chrX 1735038 1735323 -175238817 + AluJb SINE Alu 24 307 -5 239 53 0 26 chrX 1735357 1735395 -175238745 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 805 167 177 37 chrX 1735486 1735701 -175238439 - L1PA16 LINE L1 0 6166 5922 * 937 135 0 0 chrX 1735697 1735830 -175238310 + L1PA16 LINE L1 5786 5918 -248 1850 128 28 24 chrX 1737051 1737339 -175236801 - AluJo SINE Alu -23 289 1 313 156 0 78 chrX 1738471 1738548 -175235592 - MER53 DNA DNA 0 189 119 401 129 14 0 chrX 1738689 1738759 -175235381 + (TA)n Simple_repeat Simple_repeat 1 71 0 2203 111 9 19 chrX 1738760 1739075 -175235065 - AluSx SINE Alu 0 312 1 2144 122 21 0 chrX 1739194 1739482 -175234658 + AluSq SINE Alu 1 294 -19 30 27 0 0 chrX 1739709 1739746 -175234394 + AT_rich Low_complexity Low_complexity 1 37 0 426 133 0 53 chrX 1739781 1739856 -175234284 + AluS SINE Alu 2 72 -246 1841 171 3 0 chrX 1740231 1740557 -175233583 - AluJo SINE Alu 0 312 1 836 150 111 28 chrX 1740669 1740849 -175233291 - MER4E-int LTR ERV1 -1653 5105 4911 1658 174 0 7 chrX 1740849 1741131 -175233009 - MER4E LTR ERV1 0 779 500 3508 138 29 16 chrX 1741145 1741705 -175232435 + MER50 LTR ERV1 1 571 -163 2430 76 0 7 chrX 1741705 1742007 -175232133 - AluSq SINE Alu -13 300 1 3508 138 29 16 chrX 1742007 1742026 -175232114 + MER50 LTR ERV1 571 588 -146 1001 137 18 12 chrX 1742026 1742194 -175231946 - MER4E-int LTR ERV1 -2421 4337 4169 1600 99 5 9 chrX 1742194 1742407 -175231733 + AluSq SINE Alu 85 296 -17 471 138 0 0 chrX 1742423 1742503 -175231637 - MER4E-int LTR ERV1 -2572 4186 4107 2881 118 60 128 chrX 1742525 1742632 -175231508 + MER4A LTR ERV1 2 115 -664 207 0 0 0 chrX 1742632 1742655 -175231485 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2881 118 60 128 chrX 1742655 1743253 -175230887 + MER4A LTR ERV1 115 779 0 769 145 7 62 chrX 1743253 1743398 -175230742 - MER4E-int LTR ERV1 -2653 4105 3969 281 186 17 0 chrX 1743398 1743457 -175230683 + MER72 LTR ERV1 663 722 0 4459 105 2 3 chrX 1743480 1744081 -175230059 - MER4A LTR ERV1 0 600 1 4899 136 8 45 chrX 1744081 1744093 -175230047 - MER4E-int LTR ERV1 -2794 3964 3953 2061 159 14 30 chrX 1744093 1744463 -175229677 + THE1B LTR MaLR 1 364 0 4899 136 8 45 chrX 1744463 1744796 -175229344 - MER4E-int LTR ERV1 -2805 3953 3609 2101 134 0 3 chrX 1744796 1745088 -175229052 + AluSx SINE Alu 5 295 -17 4899 136 8 45 chrX 1745088 1745190 -175228950 - MER4E-int LTR ERV1 -3149 3609 3505 1477 115 55 0 chrX 1745190 1745408 -175228732 - MER30 DNA MER1_type 0 230 1 4899 136 8 45 chrX 1745408 1745802 -175228338 - MER4E-int LTR ERV1 -3253 3505 3152 1379 201 21 97 chrX 1745802 1746086 -175228054 + LTR9 LTR ERV1 1 305 -307 2293 83 0 10 chrX 1746086 1746408 -175227732 + AluSq SINE Alu 1 319 0 1379 201 21 97 chrX 1746408 1746462 -175227678 + LTR9 LTR ERV1 305 305 -307 1998 91 4 0 chrX 1746462 1746716 -175227424 + AluSp SINE Alu 47 301 -12 1379 201 21 97 chrX 1746716 1746798 -175227342 + LTR9 LTR ERV1 304 391 -221 936 184 116 54 chrX 1746776 1747053 -175227087 + LTR19C LTR ERV1 486 779 0 * 1558 151 36 4 chrX 1747054 1747332 -175226808 - MER4E-int LTR ERV1 -3604 3154 2868 963 271 43 88 chrX 1747343 1747853 -175226287 + LTR1B LTR ERV1 39 603 -302 12805 150 64 73 chrX 1747959 1748184 -175225956 - MER4E-int LTR ERV1 -3885 2873 2647 1619 163 10 27 chrX 1748184 1748484 -175225656 + AluJo SINE Alu 1 295 -17 12805 150 64 73 chrX 1748484 1749094 -175225046 - MER4E-int LTR ERV1 -4111 2647 2033 2193 119 0 10 chrX 1749094 1749396 -175224744 - AluSg SINE Alu -11 299 1 12805 150 64 73 chrX 1749396 1749473 -175224667 - MER4E-int LTR ERV1 -4725 2033 1957 2158 119 0 3 chrX 1749473 1749776 -175224364 + AluSx SINE Alu 1 302 -10 12805 150 64 73 chrX 1749776 1750680 -175223460 - MER4E-int LTR ERV1 -4801 1957 1046 2257 105 20 0 chrX 1750680 1750986 -175223154 + AluSx SINE Alu 1 312 0 12805 150 64 73 chrX 1750986 1752060 -175222080 - MER4E-int LTR ERV1 -5712 1046 6 2367 159 84 16 chrX 1752064 1752504 -175221636 - MER4E LTR ERV1 0 779 310 987 219 21 29 chrX 1752504 1752710 -175221430 + L1MC4 LINE L1 7316 7521 -521 2209 110 0 0 chrX 1752710 1753009 -175221131 + AluSx SINE Alu 1 299 -13 987 219 21 29 chrX 1753009 1753044 -175221096 + L1MC4 LINE L1 7521 7555 -487 244 254 59 35 chrX 1753078 1753247 -175220893 - L1M4 LINE L1 -3861 2285 2113 1653 155 3 91 chrX 1753669 1753688 -175220452 - AluJo SINE Alu -6 306 287 180 0 0 0 chrX 1753688 1753708 -175220432 + (TAG)n Simple_repeat Simple_repeat 1 20 0 1653 155 3 91 chrX 1753708 1754017 -175220123 - AluJo SINE Alu -25 287 7 2259 122 70 14 chrX 1754188 1754532 -175219608 + THE1B LTR MaLR 1 363 -1 23 33 0 0 chrX 1754979 1755009 -175219131 + AT_rich Low_complexity Low_complexity 1 30 0 323 34 134 0 chrX 1755009 1755128 -175219012 + (TA)n Simple_repeat Simple_repeat 2 136 0 403 222 0 30 chrX 1755131 1755230 -175218910 - L1MA7 LINE L1 -25 6266 6171 * 432 149 14 0 chrX 1755228 1755302 -175218838 + L1MA7 LINE L1 6043 6117 -174 307 308 47 0 chrX 1755409 1755516 -175218624 - MIR SINE MIR -52 210 99 1980 60 0 8 chrX 1755963 1756213 -175217927 + AluSq SINE Alu 1 248 -65 488 118 13 0 chrX 1756431 1756507 -175217633 + Alu SINE Alu 225 301 -10 456 132 44 22 chrX 1756507 1756598 -175217542 - L1MB3 LINE L1 -5 6178 6086 2070 121 0 3 chrX 1756600 1756882 -175217258 + AluSx SINE Alu 6 286 -26 544 145 13 0 chrX 1756918 1756994 -175217146 + AluJ/FLAM SINE Alu 2 78 -234 1848 166 130 13 chrX 1757024 1757416 -175216724 + MER66B LTR ERV1 48 485 -1 531 284 132 11 chrX 1757667 1757857 -175216283 - MIR SINE MIR -2 260 48 217 115 19 39 chrX 1759152 1759204 -175214936 + CT-rich Low_complexity Low_complexity 3 53 0 661 169 11 33 chrX 1759220 1759403 -175214737 + CT-rich Low_complexity Low_complexity 2 180 0 1136 153 0 0 chrX 1759461 1759638 -175214502 - AluSg/x SINE Alu 0 310 134 380 239 69 96 chrX 1759784 1760002 -175214138 + MLT1L LTR MaLR 225 461 -75 1377 237 72 70 chrX 1760581 1760628 -175213512 + MER74B LTR ERVL 57 102 -520 1559 166 72 11 chrX 1760628 1760906 -175213234 - AluJo SINE Alu -17 295 1 1377 237 72 70 chrX 1760906 1760986 -175213154 + MER74B LTR ERVL 102 180 -442 2049 127 81 35 chrX 1760986 1761333 -175212807 + THE1B LTR MaLR 2 364 0 1377 237 72 70 chrX 1761333 1761744 -175212396 + MER74B LTR ERVL 180 597 -25 576 192 135 0 chrX 1761754 1761858 -175212282 + FLAM_C SINE Alu 1 118 -15 32 0 0 0 chrX 1761858 1761890 -175212250 + AT_rich Low_complexity Low_complexity 1 32 0 2159 117 0 0 chrX 1761943 1762250 -175211890 + AluSx SINE Alu 1 307 0 324 158 0 0 chrX 1762593 1762650 -175211490 + GA-rich Low_complexity Low_complexity 3 59 0 1254 82 10 46 chrX 1762670 1762865 -175211275 - AluSg/x SINE Alu -4 308 121 469 210 4 4 chrX 1763041 1763279 -175210861 + GA-rich Low_complexity Low_complexity 1 238 0 2167 151 34 77 chrX 1763635 1764131 -175210009 + L1MA8 LINE L1 5816 6290 -1 314 197 17 11 chrX 1764884 1765062 -175209078 + (TA)n Simple_repeat Simple_repeat 1 179 0 21 0 0 0 chrX 1765062 1765083 -175209057 + AT_rich Low_complexity Low_complexity 1 21 0 290 250 35 43 chrX 1765083 1765199 -175208941 - L1MA5A LINE L1 -11 6286 6172 534 259 179 0 chrX 1765220 1765382 -175208758 + MIR SINE MIR 42 232 -30 264 184 41 0 chrX 1765415 1765562 -175208578 + (TA)n Simple_repeat Simple_repeat 2 154 0 236 210 30 10 chrX 1765581 1765894 -175208246 + (TA)n Simple_repeat Simple_repeat 1 319 0 498 278 179 0 chrX 1765978 1766140 -175208000 - MIR SINE MIR -30 232 42 667 171 0 16 chrX 1766161 1766284 -175207856 + L1MA5A LINE L1 6172 6292 -5 24 85 0 0 chrX 1766297 1766356 -175207784 + AT_rich Low_complexity Low_complexity 1 59 0 2046 96 25 53 chrX 1766854 1767064 -175207076 + L1PB1 LINE L1 5475 5689 -462 2133 108 0 0 chrX 1767064 1767343 -175206797 + AluSx SINE Alu 1 279 -33 264 30 0 0 chrX 1767343 1767376 -175206764 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2046 96 25 53 chrX 1767376 1767486 -175206654 + L1PB1 LINE L1 5687 5787 -364 294 29 0 0 chrX 1767688 1767723 -175206417 + (CA)n Simple_repeat Simple_repeat 1 35 0 2865 69 6 0 chrX 1767723 1768073 -175206067 + L1PB1 LINE L1 5793 6144 -7 3278 170 17 7 chrX 1768306 1768883 -175205257 + L1MA8 LINE L1 5696 6278 -13 229 155 0 71 chrX 1768906 1768990 -175205150 + A-rich Low_complexity Low_complexity 1 78 0 1714 137 63 4 chrX 1769058 1769329 -175204811 + AluJo SINE Alu 9 295 -17 28 0 0 0 chrX 1769371 1769399 -175204741 + AT_rich Low_complexity Low_complexity 1 28 0 1804 138 0 56 chrX 1769934 1770253 -175203887 + AluJo SINE Alu 1 301 -11 1834 98 8 0 chrX 1770791 1771036 -175203104 - AluSx SINE Alu -16 296 50 310 97 0 32 chrX 1771468 1771530 -175202610 + (CA)n Simple_repeat Simple_repeat 2 61 0 240 301 27 0 chrX 1771540 1771613 -175202527 + GA-rich Low_complexity Low_complexity 5 79 0 1712 147 41 10 chrX 1772551 1772844 -175201296 - AluJo SINE Alu -10 302 1 1049 189 0 0 chrX 1773009 1773178 -175200962 - AluSx SINE Alu -15 295 127 279 0 0 0 chrX 1773194 1773225 -175200915 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 40424 73 10 7 chrX 1773225 1779334 -175194806 - L1PA6 LINE L1 -11 6143 11 1143 82 0 0 chrX 1779345 1779480 -175194660 - AluSx SINE Alu -178 135 1 1637 201 0 26 chrX 1779781 1780090 -175194050 - AluJo SINE Alu -11 301 1 1742 185 7 0 chrX 1780158 1780461 -175193679 + 7SLRNA srpRNA srpRNA 16 320 0 1997 138 7 0 chrX 1782088 1782385 -175191755 + AluSx SINE Alu 3 301 -11 1627 174 7 37 chrX 1782400 1782699 -175191441 + AluJo SINE Alu 1 290 -22 22 0 0 0 chrX 1782699 1782721 -175191419 + AT_rich Low_complexity Low_complexity 1 22 0 679 270 42 5 chrX 1782757 1782972 -175191168 - LTR16C LTR ERVL -45 446 224 306 62 0 0 chrX 1783298 1783346 -175190794 - AluSp/q SINE Alu 0 303 256 239 321 0 42 chrX 1783484 1783652 -175190488 + T-rich Low_complexity Low_complexity 2 162 0 206 398 12 12 chrX 1783610 1783771 -175190369 + CT-rich Low_complexity Low_complexity 3 163 0 * 2320 167 29 12 chrX 1783960 1784379 -175189761 + L1MC1 LINE L1 5907 6332 -1 2070 119 0 4 chrX 1784386 1784683 -175189457 + AluSx SINE Alu 9 304 0 1237 236 0 0 chrX 1784683 1784925 -175189215 + AluJb SINE Alu 51 292 -20 1765 162 0 32 chrX 1785008 1785317 -175188823 + AluJb SINE Alu 1 299 -13 187 254 18 36 chrX 1785753 1785808 -175188332 - MIR SINE MIR -139 69 16 425 208 15 15 chrX 1786329 1786421 -175187719 + (TCTA)n Simple_repeat Simple_repeat 1 91 -554 2493 124 5 27 chrX 1786421 1786793 -175187347 - THE1B LTR MaLR 0 364 1 425 208 15 15 chrX 1786793 1786974 -175187166 + (TCTA)n Simple_repeat Simple_repeat 91 645 0 * 604 48 29 19 chrX 1786973 1787076 -175187064 + (TTTC)n Simple_repeat Simple_repeat 4 107 0 509 105 30 63 chrX 1787096 1787340 -175186800 + (TCTA)n Simple_repeat Simple_repeat 1 235 0 222 105 0 0 chrX 1787340 1787378 -175186762 + (TC)n Simple_repeat Simple_repeat 2 39 0 744 224 33 22 chrX 1788848 1789031 -175185109 + MLT1D LTR MaLR 1 185 -320 797 178 0 0 chrX 1789162 1789280 -175184860 + FLAM_C SINE Alu 1 118 -15 379 195 58 12 chrX 1789393 1789534 -175184606 + MLT1D LTR MaLR 191 360 -123 792 233 81 106 chrX 1789545 1790038 -175184102 + MLT1D LTR MaLR 1 481 -24 872 163 0 15 chrX 1790870 1791005 -175183135 + FLAM_C SINE Alu 1 133 0 2236 118 0 6 chrX 1791328 1791642 -175182498 - AluSx SINE Alu 0 312 1 1738 180 7 16 chrX 1792483 1792788 -175181352 + AluSx SINE Alu 3 304 -8 333 351 61 63 chrX 1792925 1793351 -175180789 + L2 LINE L2 2511 2936 -336 1350 249 32 99 chrX 1793351 1793418 -175180722 - LTR45 LTR ERV1 0 525 455 1595 185 10 3 chrX 1793418 1793710 -175180430 - AluJb SINE Alu -13 299 6 1350 249 32 99 chrX 1793710 1793859 -175180281 - LTR45 LTR ERV1 -70 455 298 1824 166 10 13 chrX 1793859 1794172 -175179968 + AluJo SINE Alu 1 312 0 1350 249 32 99 chrX 1794172 1794517 -175179623 - LTR45 LTR ERV1 -227 298 1 333 351 61 63 chrX 1794517 1794693 -175179447 + L2 LINE L2 2936 3108 -164 1114 214 18 7 chrX 1794973 1795249 -175178891 - L1MA4 LINE L1 0 6300 6022 813 150 21 50 chrX 1795389 1795529 -175178611 - AluJo SINE Alu -176 136 1 2249 110 0 3 chrX 1795572 1795873 -175178267 - AluSg SINE Alu -10 300 1 1036 203 5 0 chrX 1795898 1796095 -175178045 - AluJ SINE Alu -8 304 107 455 171 0 24 chrX 1796102 1796184 -175177956 + AluY SINE Alu 4 83 -228 * 820 148 0 0 chrX 1796176 1796291 -175177849 - AluJ SINE Alu -193 119 5 1051 139 0 0 chrX 1796356 1796514 -175177626 - FRAM SINE Alu -7 169 12 639 169 0 119 chrX 1796885 1797045 -175177095 + AluJb SINE Alu 149 289 -23 2172 197 10 18 chrX 1797045 1797446 -175176694 - MER57A LTR ERV1 -4 399 2 3428 168 21 33 chrX 1797669 1797876 -175176264 + LTR51 LTR ERV1 1 209 -462 1806 173 0 20 chrX 1797876 1798171 -175175969 - AluJb SINE Alu -23 289 1 3428 168 21 33 chrX 1798171 1798350 -175175790 + LTR51 LTR ERV1 209 389 -282 1796 154 48 7 chrX 1798350 1798642 -175175498 - AluJb SINE Alu -5 307 4 3428 168 21 33 chrX 1798642 1798919 -175175221 + LTR51 LTR ERV1 389 657 -14 7948 35 2 0 chrX 1798919 1800556 -175173584 + L1PA3 LINE L1 4514 6153 -2 347 194 83 28 chrX 1800632 1800740 -175173400 + MER34C LTR ERV1 37 150 -435 423 91 0 0 chrX 1800744 1800799 -175173341 - L1PA13 LINE L1 -69 6094 6040 489 186 21 10 chrX 1800799 1800896 -175173244 + MER4A LTR ERV1 1 98 -566 1694 129 25 73 chrX 1800896 1801259 -175172881 + MER4A LTR ERV1 261 664 0 1721 87 0 0 chrX 1801259 1801490 -175172650 - L1PA12 LINE L1 -125 6043 5813 767 243 44 56 chrX 1801532 1801941 -175172199 + MER34B LTR ERV1 76 557 -8 265 200 0 0 chrX 1801958 1802008 -175172132 + MER45A DNA AcHobo 79 128 -50 2948 113 5 27 chrX 1802008 1802168 -175171972 - MER57B LTR ERV1 0 434 272 2352 52 7 29 chrX 1802168 1802475 -175171665 + AluY SINE Alu 1 300 -11 2948 113 5 27 chrX 1802475 1802758 -175171382 - MER57B LTR ERV1 -162 272 1 265 226 20 0 chrX 1802780 1802851 -175171289 + MER45 DNA AcHobo 1506 1580 -1 1942 149 3 0 chrX 1803074 1803376 -175170764 + AluJb SINE Alu 1 303 -9 345 337 46 17 chrX 1805013 1805188 -175168952 - MIR SINE MIR -10 252 73 211 403 21 27 chrX 1805364 1805550 -175168590 + MIR3 SINE MIR 19 203 -5 1184 130 52 23 chrX 1805855 1806099 -175168041 - L1PB1 LINE L1 -215 5941 5693 2372 181 37 45 chrX 1806142 1806360 -175167780 - MER66B LTR ERV1 -3 483 265 1912 127 0 7 chrX 1806360 1806636 -175167504 - AluSx SINE Alu -3 309 36 2372 181 37 45 chrX 1806636 1806904 -175167236 - MER66B LTR ERV1 -221 265 1 181 336 26 43 chrX 1806908 1807024 -175167116 + MIR SINE MIR 10 123 -139 1020 211 26 103 chrX 1807053 1807469 -175166671 + MLT1B LTR MaLR 7 390 0 481 111 100 11 chrX 1807694 1807784 -175166356 + MER4A LTR ERV1 1 98 -566 1775 141 163 68 chrX 1807784 1808153 -175165987 + MER4A LTR ERV1 261 664 0 1069 203 64 0 chrX 1808403 1808639 -175165501 + AluJo SINE Alu 1 251 -61 2196 124 0 0 chrX 1808814 1809112 -175165028 - AluSx SINE Alu -14 298 1 1470 156 7 68 chrX 1810122 1810197 -175163943 + L1MA5A LINE L1 6006 6084 -213 3771 132 4 9 chrX 1810197 1810727 -175163413 + MER1A DNA MER1_type 1 527 0 1470 156 7 68 chrX 1810727 1810946 -175163194 + L1MA5A LINE L1 6084 6282 -15 180 111 0 0 chrX 1811141 1811168 -175162972 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 2157 128 0 3 chrX 1811374 1811679 -175162461 - AluSx SINE Alu -8 304 1 475 246 41 8 chrX 1811748 1811870 -175162270 - L1MA9 LINE L1 -9 6303 6178 1558 151 44 4 chrX 1812575 1812846 -175161294 + L1PA16 LINE L1 5875 6156 -10 21 36 0 0 chrX 1812846 1812874 -175161266 + AT_rich Low_complexity Low_complexity 1 28 0 2191 125 3 0 chrX 1812953 1813256 -175160884 - AluSp SINE Alu -9 304 1 2222 109 3 0 chrX 1813260 1813554 -175160586 - AluSq SINE Alu -13 300 6 2518 258 76 8 chrX 1813574 1814522 -175159618 + L1M4 LINE L1 4187 5198 -948 29 47 0 0 chrX 1814554 1814597 -175159543 + AT_rich Low_complexity Low_complexity 1 43 0 424 195 80 0 chrX 1814637 1814750 -175159390 - L1M4 LINE L1 -1382 4764 4643 323 277 0 0 chrX 1814753 1814818 -175159322 + MER2 DNA MER2_type 280 344 -1 211 216 0 54 chrX 1814844 1814918 -175159222 + T-rich Low_complexity Low_complexity 1 70 0 651 238 10 10 chrX 1814941 1815147 -175158993 - L1M4 LINE L1 -948 5198 4993 1629 156 7 19 chrX 1815149 1815418 -175158722 - MER2 DNA MER2_type -79 266 1 2138 123 3 3 chrX 1816529 1816839 -175157301 + AluSq SINE Alu 1 310 -3 2219 166 20 43 chrX 1817655 1818100 -175156040 + L1MA4 LINE L1 5586 6020 -280 412 172 35 0 chrX 1818103 1818190 -175155950 + L1MB3 LINE L1 6094 6183 0 235 347 31 0 chrX 1818767 1818865 -175155275 + L2 LINE L2 2936 3036 -277 24 0 0 0 chrX 1818865 1818889 -175155251 + AT_rich Low_complexity Low_complexity 1 24 0 506 260 82 41 chrX 1818927 1819146 -175154994 + L2 LINE L2 3034 3261 -52 2291 75 4 0 chrX 1819371 1819650 -175154490 - AluSc SINE Alu -17 292 13 3173 123 11 0 chrX 1819694 1820149 -175153991 + L1PB2 LINE L1 5683 6142 -9 2296 107 3 0 chrX 1821400 1821708 -175152432 + AluSg1 SINE Alu 1 309 0 25 31 0 0 chrX 1822436 1822468 -175151672 + AT_rich Low_complexity Low_complexity 1 32 0 1460 237 72 86 chrX 1822478 1823224 -175150916 + L1MC4 LINE L1 7172 7907 -135 186 133 0 0 chrX 1823233 1823263 -175150877 + (GA)n Simple_repeat Simple_repeat 2 31 0 391 206 0 11 chrX 1823301 1823393 -175150747 + L1MC4 LINE L1 7935 8025 -17 2400 130 30 25 chrX 1823554 1823916 -175150224 - THE1B LTR MaLR 0 364 1 736 174 0 43 chrX 1824042 1824180 -175149960 + FLAM_C SINE Alu 3 134 -9 551 15 15 0 chrX 1824216 1824284 -175149856 + (TG)n Simple_repeat Simple_repeat 2 70 0 2007 99 70 0 chrX 1824295 1824568 -175149572 - AluSp SINE Alu -21 292 1 949 264 55 42 chrX 1825140 1825519 -175148621 - MLT1B LTR MaLR -6 384 1 227 186 43 0 chrX 1826133 1826203 -175147937 + (TA)n Simple_repeat Simple_repeat 2 74 0 294 211 51 23 chrX 1826266 1826441 -175147699 + (TA)n Simple_repeat Simple_repeat 1 180 0 382 170 33 55 chrX 1826795 1826977 -175147163 + (TATAA)n Simple_repeat Simple_repeat 1 178 0 22 80 0 0 chrX 1827081 1827131 -175147009 + AT_rich Low_complexity Low_complexity 1 50 0 823 178 0 0 chrX 1827163 1827292 -175146848 - FRAM SINE Alu -25 151 23 22 35 0 0 chrX 1827329 1827358 -175146782 + AT_rich Low_complexity Low_complexity 1 29 0 226 235 41 24 chrX 1827367 1827537 -175146603 + (TA)n Simple_repeat Simple_repeat 1 173 0 195 259 121 35 chrX 1828135 1828251 -175145889 + MIR SINE MIR 136 261 -1 356 121 4 0 chrX 1828271 1828391 -175145749 + MADE1 DNA Mariner 1 80 0 4275 141 38 0 chrX 1828398 1829056 -175145084 + L1PA16 LINE L1 5476 6158 -8 2245 69 24 0 chrX 1829137 1829425 -175144715 - AluY SINE Alu -16 295 1 315 96 0 0 chrX 1830084 1830136 -175144004 + (TATG)n Simple_repeat Simple_repeat 1 52 0 643 118 57 10 chrX 1830136 1830545 -175143595 + (TCTA)n Simple_repeat Simple_repeat 1 428 0 200 259 0 17 chrX 1830576 1830634 -175143506 + (CA)n Simple_repeat Simple_repeat 2 58 0 24 53 0 0 chrX 1830661 1830699 -175143441 + AT_rich Low_complexity Low_complexity 1 38 0 1879 107 4 32 chrX 1831078 1831101 -175143039 + L1PA16 LINE L1 5665 5687 -479 1805 193 0 0 chrX 1831101 1831396 -175142744 + AluJb SINE Alu 1 295 -17 1879 107 4 32 chrX 1831396 1831652 -175142488 + L1PA16 LINE L1 5687 5936 -230 1765 143 7 33 chrX 1831652 1831925 -175142215 - AluJo SINE Alu -46 266 1 290 214 11 34 chrX 1832051 1832140 -175142000 + L1MA9 LINE L1 6196 6282 -30 1375 184 4 0 chrX 1832156 1832390 -175141750 + L1PA16 LINE L1 5923 6157 -9 2862 176 94 25 chrX 1833026 1833451 -175140689 + LTR26 LTR ERV1 1 476 -127 2034 136 7 0 chrX 1833451 1833746 -175140394 + AluSq SINE Alu 1 297 -16 2862 176 94 25 chrX 1833746 1833884 -175140256 + LTR26 LTR ERV1 476 603 0 22 56 0 0 chrX 1834301 1834337 -175139803 + AT_rich Low_complexity Low_complexity 1 36 0 802 197 185 31 chrX 1834346 1834642 -175139498 + MLT1C LTR MaLR 1 361 -144 962 211 88 53 chrX 1834652 1834993 -175139147 + MLT1C LTR MaLR 1 353 -114 22 0 0 0 chrX 1834996 1835018 -175139122 + AT_rich Low_complexity Low_complexity 1 22 0 1089 206 11 35 chrX 1835064 1835477 -175138663 + MLT1D LTR MaLR 2 466 -39 1688 202 3 3 chrX 1835477 1835774 -175138366 - AluJb SINE Alu -15 297 1 1089 206 11 35 chrX 1835774 1835814 -175138326 + MLT1D LTR MaLR 466 505 0 1351 101 291 0 chrX 1836277 1836504 -175137636 - AluSx SINE Alu -9 293 1 198 71 0 0 chrX 1836934 1836962 -175137178 + (TA)n Simple_repeat Simple_repeat 2 29 0 221 89 36 36 chrX 1836990 1837046 -175137094 + (TA)n Simple_repeat Simple_repeat 2 57 0 655 218 12 98 chrX 1837336 1837580 -175136560 - L1MA4 LINE L1 -2 6298 6077 339 170 9 27 chrX 1838534 1838646 -175135494 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 644 126 30 18 chrX 1838658 1838825 -175135315 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 334 297 21 11 chrX 1838858 1839165 -175134975 + (TGGA)n Simple_repeat Simple_repeat 1 310 0 671 132 17 35 chrX 1839167 1839341 -175134799 + (TAGA)n Simple_repeat Simple_repeat 1 171 0 310 298 16 8 chrX 1839363 1839484 -175134656 + (TGGA)n Simple_repeat Simple_repeat 3 124 0 209 194 0 0 chrX 1839516 1839579 -175134561 + (TATG)n Simple_repeat Simple_repeat 1 63 0 545 219 24 0 chrX 1839642 1839938 -175134202 + (TAGA)n Simple_repeat Simple_repeat 1 303 0 205 217 57 38 chrX 1839938 1840044 -175134096 + (TGGA)n Simple_repeat Simple_repeat 3 110 0 2081 143 0 10 chrX 1840664 1840972 -175133168 + AluSx SINE Alu 1 305 -7 1217 161 21 0 chrX 1840981 1841174 -175132966 - AluJo SINE Alu -110 202 6 2107 146 14 6 chrX 1841459 1841808 -175132332 + MLT1A1 LTR MaLR 12 363 -2 1494 114 0 0 chrX 1841815 1842008 -175132132 - AluSc SINE Alu -16 293 101 495 113 0 0 chrX 1842008 1842070 -175132070 - AluSc SINE Alu -246 63 2 1950 148 3 10 chrX 1842276 1842586 -175131554 - AluSx SINE Alu 0 312 5 2167 236 33 9 chrX 1842606 1842624 -175131516 + L1MB5 LINE L1 5599 5615 -559 2278 104 7 0 chrX 1842624 1842923 -175131217 + AluSp SINE Alu 1 301 -12 2167 236 33 9 chrX 1842923 1843465 -175130675 + L1MB5 LINE L1 5615 6142 -32 2009 158 0 0 chrX 1843465 1843776 -175130364 + AluJb SINE Alu 1 311 -1 1466 219 29 0 chrX 1843783 1844061 -175130079 + AluJo SINE Alu 1 286 -26 1809 128 4 0 chrX 1844161 1844419 -175129721 + AluSx SINE Alu 1 259 -53 2164 106 7 3 chrX 1844561 1844854 -175129286 - AluSx SINE Alu -18 294 1 1667 181 23 13 chrX 1845139 1845448 -175128692 - AluJo SINE Alu 0 312 1 266 300 33 0 chrX 1845665 1845755 -175128385 + GA-rich Low_complexity Low_complexity 2 94 0 409 239 6 6 chrX 1845775 1845951 -175128189 + GA-rich Low_complexity Low_complexity 1 176 0 598 186 6 6 chrX 1845968 1846129 -175128011 + GA-rich Low_complexity Low_complexity 2 162 0 366 244 0 0 chrX 1846142 1846277 -175127863 + GA-rich Low_complexity Low_complexity 2 136 0 1432 183 4 18 chrX 2046286 2046559 -174927581 + LTR2B LTR ERV1 222 490 0 909 117 114 80 chrX 2046559 2046823 -174927317 + LTR1B LTR ERV1 496 784 -1 681 227 8 0 chrX 2046864 2046996 -174927144 + MER21B LTR ERV1 279 411 -452 2999 136 54 24 chrX 2047002 2047586 -174926554 - MER4B LTR ERV1 -6 773 5 2582 143 14 24 chrX 2047592 2048013 -174926127 + MER21A LTR ERV1 506 922 -9 929 193 53 0 chrX 2048023 2048210 -174925930 + L1MB1 LINE L1 5917 6113 -76 1085 35 35 17 chrX 2049183 2049355 -174924785 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1713 160 0 7 chrX 2049356 2049631 -174924509 - AluJo SINE Alu -38 274 2 2274 106 0 0 chrX 2049805 2050107 -174924033 - AluY SINE Alu -9 302 1 2500 134 7 36 chrX 2050127 2050545 -174923595 - Tigger2a DNA MER2_type -4 430 25 210 143 0 0 chrX 2050940 2050975 -174923165 + (T)n Simple_repeat Simple_repeat 1 35 0 1871 181 0 6 chrX 2050992 2051306 -174922834 + AluJb SINE Alu 1 312 0 1038 113 0 0 chrX 2051879 2052012 -174922128 - AluSq/x SINE Alu -179 133 1 12097 110 24 4 chrX 2052080 2052469 -174921671 + L1P3 LINE L1 10 390 -6061 198 71 0 0 chrX 2052469 2052497 -174921643 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 12097 110 24 4 chrX 2052497 2053868 -174920272 + L1P3 LINE L1 390 1785 -4666 291 185 33 0 chrX 2053870 2053962 -174920178 + GA-rich Low_complexity Low_complexity 2 96 0 2226 102 0 3 chrX 2054924 2055209 -174918931 + AluSx SINE Alu 1 284 -28 512 179 18 30 chrX 2055343 2055467 -174918673 + MLT1C LTR MaLR 1 108 -359 1308 158 48 9 chrX 2055467 2055695 -174918445 - AluJo SINE Alu -75 237 1 29 47 0 0 chrX 2055869 2055912 -174918228 + AT_rich Low_complexity Low_complexity 1 43 0 734 152 9 0 chrX 2056045 2056157 -174917983 - FLAM_C SINE Alu -19 124 12 189 0 0 0 chrX 2056713 2056734 -174917406 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 1662 175 3 27 chrX 2056860 2057157 -174916983 + AluJo SINE Alu 1 290 -22 1193 230 36 48 chrX 2057436 2057792 -174916348 - L1MD2 LINE L1 0 6359 6008 1944 163 3 0 chrX 2057994 2058289 -174915851 - AluJo SINE Alu -16 296 1 1608 191 75 9 chrX 2058545 2058864 -174915276 + MER2 DNA MER2_type 4 343 -1 5140 60 0 6 chrX 2059101 2059740 -174914400 - L1PA8 LINE L1 -12 6160 5526 1857 107 10 10 chrX 2060611 2060900 -174913240 + L1PA13 LINE L1 5873 6161 -2 326 205 51 13 chrX 2060947 2061025 -174913115 - MLT1E1 LTR MaLR -492 162 82 597 105 42 0 chrX 2062868 2062963 -174911177 - L1MA10 LINE L1 0 6334 6236 1501 70 0 10 chrX 2062978 2063177 -174910963 - LTR43 LTR ERV1 -8 594 398 1440 122 9 5 chrX 2063203 2063417 -174910723 - THE1A LTR MaLR -55 300 86 1654 179 24 157 chrX 2063919 2064310 -174909830 + L1MB3 LINE L1 3882 4323 -1823 1856 120 0 39 chrX 2064310 2064594 -174909546 + AluSx SINE Alu 1 273 -39 1654 179 24 157 chrX 2064594 2064695 -174909445 + L1MB3 LINE L1 4323 4285 -1861 1940 137 46 0 chrX 2064695 2064980 -174909160 + AluSx SINE Alu 1 298 -14 1654 179 24 157 chrX 2064980 2065079 -174909061 + L1MB3 LINE L1 4284 4395 -1751 * 2726 158 30 81 chrX 2065050 2065659 -174908481 + L1MB3 LINE L1 5602 6179 -4 1569 142 103 36 chrX 2066105 2066186 -174907954 + MSTA LTR MaLR 98 172 -256 2558 53 3 0 chrX 2066186 2066488 -174907652 + AluY SINE Alu 2 304 -7 1569 142 103 36 chrX 2066488 2066708 -174907432 + MSTA LTR MaLR 172 419 -9 388 211 12 170 chrX 2067767 2067803 -174906337 + MER112 DNA MER1_type 8 48 -212 2325 94 0 0 chrX 2067803 2068100 -174906040 + AluSx SINE Alu 1 297 -15 2126 104 30 7 chrX 2068101 2068398 -174905742 + AluSx SINE Alu 1 304 -8 388 211 12 170 chrX 2068398 2068542 -174905598 + MER112 DNA MER1_type 48 144 -116 2258 99 7 7 chrX 2068542 2068845 -174905295 - AluSx SINE Alu -3 309 7 388 211 12 170 chrX 2068845 2068908 -174905232 + MER112 DNA MER1_type 144 215 -45 2304 106 3 0 chrX 2069581 2069883 -174904257 - AluSx SINE Alu -9 303 1 1532 145 9 112 chrX 2070549 2070880 -174903260 - AluJb SINE Alu -14 298 2 275 0 29 0 chrX 2071227 2071261 -174902879 - MADE1 DNA Mariner -45 35 1 1426 244 97 30 chrX 2072257 2072752 -174901388 + MLT1H LTR MaLR 1 528 -21 29 0 0 0 chrX 2073236 2073265 -174900875 + AT_rich Low_complexity Low_complexity 1 29 0 2110 138 0 0 chrX 2073307 2073605 -174900535 - AluSx SINE Alu -3 309 12 1901 155 0 29 chrX 2074352 2074662 -174899478 + AluJo SINE Alu 1 301 -11 2432 43 4 0 chrX 2074711 2075010 -174899130 - AluY SINE Alu 0 300 1 1666 162 49 0 chrX 2075389 2075508 -174898632 + AluJo SINE Alu 1 113 -199 321 26 0 0 chrX 2075508 2075546 -174898594 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1666 162 49 0 chrX 2075546 2075710 -174898430 + AluJo SINE Alu 113 298 -14 1729 162 7 34 chrX 2076614 2076911 -174897229 - AluJo SINE Alu -23 289 1 1802 182 0 10 chrX 2077301 2077614 -174896526 - AluJo SINE Alu 0 312 3 2075 143 10 0 chrX 2078234 2078541 -174895599 + AluSx SINE Alu 1 310 -2 1985 177 32 0 chrX 2078574 2078946 -174895194 + L1PB4 LINE L1 5766 6149 -7 22 0 0 0 chrX 2079154 2079176 -174894964 + GC_rich Low_complexity Low_complexity 1 22 0 79 55 0 0 chrX 2079195 2079323 -174894817 + GC_rich Low_complexity Low_complexity 1 128 0 140 71 0 0 chrX 2079368 2079648 -174894492 + GC_rich Low_complexity Low_complexity 1 280 0 206 163 20 0 chrX 2079665 2079714 -174894426 + C-rich Low_complexity Low_complexity 4 53 0 519 194 0 36 chrX 2079834 2079999 -174894141 + GA-rich Low_complexity Low_complexity 1 159 0 249 273 13 26 chrX 2079999 2080076 -174894064 + A-rich Low_complexity Low_complexity 1 76 0 529 292 0 0 chrX 2080159 2080289 -174893851 - MER77 LTR ERV1 0 605 476 984 176 64 5 chrX 2080292 2080496 -174893644 - L1M2 LINE L1 -725 5587 5372 276 138 62 75 chrX 2080498 2080535 -174893605 + L1MA9 LINE L1 6234 6270 -42 1675 159 0 15 chrX 2080535 2080799 -174893341 + AluJb SINE Alu 35 294 -18 276 138 62 75 chrX 2080799 2080841 -174893299 + L1MA9 LINE L1 6270 6312 0 1443 261 55 60 chrX 2080920 2081407 -174892733 - MER77 LTR ERV1 -119 486 2 185 35 69 0 chrX 2082525 2082554 -174891586 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2426 118 8 30 chrX 2082600 2082972 -174891168 - THE1B LTR MaLR 0 364 1 1892 169 0 10 chrX 2083068 2083382 -174890758 + AluJb SINE Alu 1 311 -1 808 225 89 65 chrX 2083551 2083957 -174890183 - MLT1C LTR MaLR -6 587 45 278 266 32 13 chrX 2084858 2085016 -174889124 + (TATAA)n Simple_repeat Simple_repeat 2 162 0 215 224 19 28 chrX 2084972 2085079 -174889061 + (TTA)n Simple_repeat Simple_repeat 3 108 0 * 205 121 61 38 chrX 2085079 2085211 -174888929 + (TATAA)n Simple_repeat Simple_repeat 5 139 0 255 178 23 85 chrX 2085258 2085387 -174888753 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 22 35 0 0 chrX 2085604 2085633 -174888507 + AT_rich Low_complexity Low_complexity 1 29 0 2185 109 46 57 chrX 2087489 2087856 -174886284 + THE1B LTR MaLR 1 363 -1 201 154 0 0 chrX 2087863 2087902 -174886238 + (CAA)n Simple_repeat Simple_repeat 1 39 0 10879 21 1 0 chrX 2088115 2090068 -174884072 - L1PA2 LINE L1 -60 6095 4142 19545 190 4 13 chrX 2090068 2095961 -174878179 + HERVE LTR ERV1 814 6668 -1145 272 301 194 25 chrX 2096849 2097045 -174877095 - MIR SINE MIR -22 240 12 236 212 15 0 chrX 2098168 2098234 -174875906 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 2250 169 43 0 chrX 2098443 2098857 -174875283 - MSTB1 LTR MaLR 0 432 1 1049 137 6 17 chrX 2098921 2099096 -174875044 + MSTB1 LTR MaLR 259 431 -1 595 248 63 76 chrX 2099301 2099668 -174874472 + L1ME3 LINE L1 5793 6154 -8 312 309 77 17 chrX 2099831 2100012 -174874128 + L1M4 LINE L1 3239 3430 -2716 314 144 56 11 chrX 2101313 2101403 -174872737 + GA-rich Low_complexity Low_complexity 1 94 0 2163 177 60 20 chrX 2102230 2102681 -174871459 + MLT2B2 LTR ERVL 1 469 -46 378 175 32 7 chrX 2102684 2102838 -174871302 + (TCTA)n Simple_repeat Simple_repeat 3 160 0 491 232 64 8 chrX 2103614 2103739 -174870401 + MER20 DNA MER1_type 1 132 -87 1553 71 0 0 chrX 2103821 2104017 -174870123 + MER107 DNA MER1_type 1 196 -1 2136 135 0 0 chrX 2104368 2104680 -174869460 - AluSx SINE Alu 0 312 1 618 313 85 25 chrX 2105394 2105793 -174868347 - HERV16 LTR ERVL -896 4868 4446 1599 236 115 61 chrX 2106360 2106952 -174867188 + MLT1E3 LTR MaLR 1 624 0 1838 174 127 16 chrX 2107994 2108379 -174865761 - MSTA LTR MaLR 0 428 1 742 293 91 80 chrX 2109091 2110037 -174864103 + L1M4 LINE L1 2177 3140 -3006 1660 132 33 7 chrX 2110037 2110310 -174863830 + L1PA16 LINE L1 5882 6161 -5 742 293 91 80 chrX 2110310 2110492 -174863648 + L1M4 LINE L1 3140 3318 -2828 1635 161 14 27 chrX 2111173 2111465 -174862675 - AluJb SINE Alu -24 288 1 316 316 28 12 chrX 2111469 2111612 -174862528 - MIR SINE MIR -105 103 12 766 59 0 2 chrX 2111624 2111880 -174862260 - AluY SINE Alu -10 301 1 660 102 0 0 chrX 2111946 2112044 -174862096 + (TG)n Simple_repeat Simple_repeat 2 99 0 1841 144 0 4 chrX 2112581 2112852 -174861288 + AluJo SINE Alu 11 280 -32 369 0 0 0 chrX 2112853 2112894 -174861246 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2674 103 15 2 chrX 2113161 2113569 -174860571 - L1PA13 LINE L1 -19 6144 5732 1931 152 0 33 chrX 2114125 2114428 -174859712 - AluJb SINE Alu -19 293 1 608 219 29 136 chrX 2114568 2114888 -174859252 - MLT1E1 LTR MaLR -242 407 102 487 181 8 24 chrX 2114888 2115015 -174859125 + L1PA13 LINE L1 5750 5874 -289 763 207 101 48 chrX 2116139 2116347 -174857793 - MER20 DNA MER1_type 0 219 1 384 40 0 0 chrX 2116703 2116753 -174857387 + (TG)n Simple_repeat Simple_repeat 2 51 0 569 322 93 34 chrX 2116936 2117473 -174856667 - HERV16 LTR ERVL -2377 3277 2709 528 323 85 26 chrX 2117772 2118162 -174855978 - HERV16 LTR ERVL -4223 773 361 622 310 24 0 chrX 2118466 2118679 -174855461 - HERV16 LTR ERVL -3814 1182 965 4373 141 35 16 chrX 2118835 2119644 -174854496 + L1PB4 LINE L1 5330 6153 -3 1959 157 20 3 chrX 2119883 2120234 -174853906 + L1MB3 LINE L1 5817 6173 -10 194 0 0 37 chrX 2121988 2122015 -174852125 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chrX 2122713 2122746 -174851394 + AT_rich Low_complexity Low_complexity 1 33 0 1070 114 35 0 chrX 2122882 2123084 -174851056 + MER39B LTR ERV1 1 209 -444 350 280 68 41 chrX 2123278 2123571 -174850569 + L1ME3A LINE L1 5331 5631 -533 663 263 51 2 chrX 2123599 2123852 -174850288 + L1ME3A LINE L1 5694 5957 -207 21 0 0 0 chrX 2123963 2123984 -174850156 + AT_rich Low_complexity Low_complexity 1 21 0 234 207 0 0 chrX 2124056 2124114 -174850026 + GA-rich Low_complexity Low_complexity 1 58 0 237 262 98 0 chrX 2124397 2124458 -174849682 + L2 LINE L2 3230 3296 -17 998 68 28 11 chrX 2126911 2127087 -174847053 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 248 167 46 42 chrX 2127131 2127356 -174846784 + (TAGA)n Simple_repeat Simple_repeat 1 226 0 392 124 46 52 chrX 2127374 2127527 -174846613 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 512 55 22 22 chrX 2127593 2127684 -174846456 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 342 161 129 21 chrX 2128366 2128459 -174845681 + L1M3 LINE L1 5653 5755 -428 1968 149 0 3 chrX 2129215 2129517 -174844623 - AluJb SINE Alu -7 305 5 314 195 49 12 chrX 2129697 2129779 -174844361 + MLT1I LTR MaLR 318 402 -7 2418 46 3 13 chrX 2129873 2130177 -174843963 + AluY SINE Alu 1 301 -10 279 0 0 0 chrX 2130283 2130314 -174843826 + (CA)n Simple_repeat Simple_repeat 2 32 0 677 143 134 0 chrX 2130580 2130699 -174843441 - AluJb SINE Alu -177 135 1 3731 106 12 9 chrX 2131292 2131856 -174842284 + L1PA16 LINE L1 5592 6157 -9 1425 234 73 15 chrX 2131892 2132423 -174841717 - MER39B LTR ERV1 0 653 92 2590 121 8 7 chrX 2132645 2133193 -174840947 + MER4E LTR ERV1 227 766 0 338 113 0 48 chrX 2133196 2133258 -174840882 - L1MB1 LINE L1 -26 6163 6105 690 165 181 6 chrX 2133281 2133463 -174840677 + MER21A LTR ERV1 6 219 -712 2646 147 45 8 chrX 2133464 2133945 -174840195 + LTR1B LTR ERV1 1 499 -327 1456 183 25 28 chrX 2133945 2134387 -174839753 + LTR2B LTR ERV1 1 490 0 2624 78 0 0 chrX 2134387 2134744 -174839396 + Harlequin LTR ERV1 1 357 -6539 625 24 0 0 chrX 2134744 2134826 -174839314 - L1PA2 LINE L1 0 6155 6074 748 89 48 8 chrX 2134826 2134950 -174839190 - AluY SINE Alu -92 219 91 1518 171 66 21 chrX 2135321 2135608 -174838532 - AluJo SINE Alu -9 303 4 684 93 0 0 chrX 2136446 2136543 -174837597 + (GAAA)n Simple_repeat Simple_repeat 1 97 0 2157 251 93 35 chrX 2136543 2136714 -174837426 + L1ME LINE L1 4151 4311 -1853 2420 74 0 3 chrX 2136714 2137013 -174837127 + AluY SINE Alu 1 298 -13 2157 251 93 35 chrX 2137013 2137720 -174836420 + L1ME LINE L1 4311 4976 -1188 1453 120 0 74 chrX 2137720 2137962 -174836178 + AluSx SINE Alu 1 224 -88 294 29 0 0 chrX 2137962 2137997 -174836143 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 2157 251 93 35 chrX 2137997 2138505 -174835635 + L1ME LINE L1 4975 5609 -555 21 0 0 0 chrX 2138605 2138626 -174835514 + AT_rich Low_complexity Low_complexity 1 21 0 2293 103 6 0 chrX 2139149 2139460 -174834680 + AluSq SINE Alu 1 313 0 26 0 0 0 chrX 2139496 2139522 -174834618 + AT_rich Low_complexity Low_complexity 1 26 0 511 198 21 80 chrX 2139526 2139705 -174834435 + L1MB5 LINE L1 6014 6183 -1 268 326 6 22 chrX 2140372 2140553 -174833587 + (CA)n Simple_repeat Simple_repeat 1 178 0 378 301 3 34 chrX 2140571 2140907 -174833233 + (CA)n Simple_repeat Simple_repeat 1 325 0 426 302 0 12 chrX 2141037 2141206 -174832934 + (CA)n Simple_repeat Simple_repeat 1 167 0 1272 235 62 75 chrX 2141700 2142138 -174832002 - MER67D LTR ERV1 -8 506 75 1352 152 14 48 chrX 2142140 2142340 -174831800 + L1MA4 LINE L1 5847 6035 -265 1689 158 4 11 chrX 2142340 2142606 -174831534 - AluJo SINE Alu -1 311 48 1352 152 14 48 chrX 2142606 2142694 -174831446 + L1MA4 LINE L1 6035 6125 -175 1787 145 8 0 chrX 2142702 2142964 -174831176 - AluJb SINE Alu -1 311 48 4209 33 17 0 chrX 2142964 2143444 -174830696 - LTR2B LTR ERV1 -2 488 1 406 58 0 0 chrX 2143445 2143497 -174830643 - AluJb SINE Alu -261 52 1 2072 118 13 54 chrX 2144251 2144566 -174829574 - AluSx SINE Alu -10 302 1 2073 141 3 3 chrX 2144800 2145104 -174829036 + AluSx SINE Alu 1 304 -8 560 101 60 18 chrX 2145420 2145588 -174828552 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 275 218 10 0 chrX 2145627 2145728 -174828412 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 197 274 27 27 chrX 2145942 2146015 -174828125 + L3 LINE CR1 1504 1576 -1 3365 177 44 6 chrX 2146695 2147333 -174826807 + L1PB4 LINE L1 5482 6143 -13 1686 167 11 28 chrX 2147879 2148166 -174825974 + AluJo SINE Alu 7 288 -24 242 114 0 23 chrX 2148169 2148213 -174825927 + (GGA)n Simple_repeat Simple_repeat 1 43 0 1135 253 63 38 chrX 2148486 2148913 -174825227 - MLT1C LTR MaLR -9 458 21 1879 161 0 40 chrX 2149010 2149334 -174824806 + AluJo SINE Alu 1 311 -1 234 240 82 96 chrX 2150122 2150180 -174823960 - MLT1J2 LTR MaLR -2 448 391 2695 55 0 3 chrX 2150180 2150492 -174823648 - AluY SINE Alu 0 311 1 234 240 82 96 chrX 2150492 2150641 -174823499 - MLT1J2 LTR MaLR -59 391 244 1368 140 18 0 chrX 2150691 2150912 -174823228 - MLT1B LTR MaLR -8 382 158 466 176 0 22 chrX 2150912 2151003 -174823137 - MLT1A2 LTR MaLR 0 374 286 562 133 67 14 chrX 2151023 2151308 -174822832 + (TCTA)n Simple_repeat Simple_repeat 1 300 0 4055 176 21 4 chrX 2151309 2152030 -174822110 - L1MB3 LINE L1 -8 6175 5443 2005 140 33 7 chrX 2152244 2152544 -174821596 - AluSx SINE Alu -4 308 1 1317 81 0 51 chrX 2152553 2152697 -174821443 + L1MA1 LINE L1 6116 6249 -53 2021 161 0 0 chrX 2152697 2152996 -174821144 + AluSx SINE Alu 1 299 -13 1317 81 0 51 chrX 2152996 2153048 -174821092 + L1MA1 LINE L1 6249 6302 0 24 0 0 0 chrX 2153048 2153072 -174821068 + AT_rich Low_complexity Low_complexity 1 24 0 397 268 14 49 chrX 2153768 2153910 -174820230 - MLT1C LTR MaLR -1 466 330 1551 137 0 0 chrX 2153910 2154161 -174819979 + AluSg/x SINE Alu 86 336 0 396 209 14 119 chrX 2154342 2154467 -174819673 - MER53 DNA DNA -1 188 92 1957 152 10 3 chrX 2154467 2154776 -174819364 + AluJb SINE Alu 1 311 -1 396 209 14 119 chrX 2154776 2154860 -174819280 - MER53 DNA DNA -97 92 1 197 339 51 0 chrX 2155272 2155331 -174818809 + L3 LINE CR1 132 193 -1384 233 270 10 0 chrX 2155433 2155533 -174818607 - HAL1 LINE L1 -124 2383 2283 2208 117 10 7 chrX 2155595 2155903 -174818237 + AluSq SINE Alu 1 309 -4 368 266 78 8 chrX 2155906 2156034 -174818106 + MER87 LTR ERV1 13 149 -392 1756 146 0 8 chrX 2156050 2156340 -174817800 + AluJb SINE Alu 30 317 0 183 42 0 0 chrX 2156366 2156390 -174817750 + (GA)n Simple_repeat Simple_repeat 2 25 0 831 248 89 65 chrX 2156514 2157003 -174817137 + LTR8A LTR ERV1 116 727 0 471 276 100 69 chrX 2157015 2157205 -174816935 - HAL1 LINE L1 -273 2234 2051 921 149 37 50 chrX 2157205 2157366 -174816774 - FRAM SINE Alu -7 159 1 471 276 100 69 chrX 2157366 2157714 -174816426 - HAL1 LINE L1 -456 2051 1679 2495 102 9 80 chrX 2157714 2158164 -174815976 - MER4E LTR ERV1 0 766 349 21 0 0 0 chrX 2158517 2158538 -174815602 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 2158657 2158678 -174815462 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 2158827 2158849 -174815291 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 2159039 2159060 -174815080 + GC_rich Low_complexity Low_complexity 1 21 0 303 122 0 0 chrX 2160128 2160177 -174813963 + (TC)n Simple_repeat Simple_repeat 2 50 0 2486 91 8 36 chrX 2160198 2160263 -174813877 - THE1A LTR MaLR 0 355 290 2263 104 0 3 chrX 2160263 2160560 -174813580 - AluSx SINE Alu -16 296 1 2486 91 8 36 chrX 2160560 2160857 -174813283 - THE1A LTR MaLR -65 290 3 10957 101 43 2 chrX 2160859 2162377 -174811763 - THE1A-int LTR MaLR 0 1580 1 2412 120 11 0 chrX 2162377 2162728 -174811412 - THE1A LTR MaLR 0 355 1 229 186 0 0 chrX 2162916 2162959 -174811181 - Alu SINE Alu -255 44 2 417 151 0 0 chrX 2163483 2163556 -174810584 + tRNA-Ile-ATT tRNA tRNA 1 73 -4 538 107 0 0 chrX 2163897 2163972 -174810168 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 230 300 80 10 chrX 2164413 2164513 -174809627 - L2 LINE L2 -4 3309 3203 1921 143 0 53 chrX 2165280 2165601 -174808539 + AluJb SINE Alu 1 304 -8 183 194 0 0 chrX 2165847 2165878 -174808262 + L2 LINE L2 3231 3261 -11 286 283 43 58 chrX 2166266 2166404 -174807736 + MER5A DNA MER1_type 49 184 -5 250 146 21 0 chrX 2166496 2166544 -174807596 - L2 LINE L2 -205 3067 3019 207 167 0 0 chrX 2167534 2167570 -174806570 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 205 155 87 41 chrX 2167884 2167933 -174806207 + MIR SINE MIR 68 119 -89 199 288 0 15 chrX 2167972 2168038 -174806102 - L2 LINE L2 -13 3259 3195 245 339 37 18 chrX 2168492 2168601 -174805539 - L2 LINE L2 -208 3064 2954 190 299 93 10 chrX 2168965 2169062 -174805078 - MER5A DNA MER1_type -11 178 74 1188 173 31 126 chrX 2169309 2169487 -174804653 - AluJo SINE Alu -8 304 168 1815 146 7 0 chrX 2169487 2169761 -174804379 + AluSx SINE Alu 1 276 -36 1188 173 31 126 chrX 2169761 2169900 -174804240 - AluJo SINE Alu -144 168 17 569 196 227 6 chrX 2170232 2170395 -174803745 + MER20 DNA MER1_type 2 200 -19 285 211 0 211 chrX 2170460 2170593 -174803547 + L2 LINE L2 3202 3306 -7 319 266 49 28 chrX 2170622 2170765 -174803375 - L1MC/D LINE L1 -2080 5728 5583 2310 124 0 0 chrX 2170797 2171103 -174803037 + AluSx SINE Alu 1 306 -6 441 272 178 47 chrX 2171114 2171412 -174802728 + L1ME3A LINE L1 5632 5968 -202 335 219 12 170 chrX 2171684 2171747 -174802393 - MER112 DNA MER1_type -45 215 144 2306 103 7 0 chrX 2171747 2172049 -174802091 + AluSx SINE Alu 7 310 -2 335 219 12 170 chrX 2172049 2172193 -174801947 - MER112 DNA MER1_type -116 144 -21 2150 104 30 7 chrX 2172193 2172490 -174801650 - AluSx SINE Alu -8 304 1 2345 94 0 0 chrX 2172491 2172788 -174801352 - AluSx SINE Alu -15 297 1 335 219 12 170 chrX 2172788 2172824 -174801316 - MER112 DNA MER1_type -212 48 8 1486 148 100 35 chrX 2173877 2174105 -174800035 - MSTA LTR MaLR -1 427 172 2569 53 3 0 chrX 2174105 2174407 -174799733 - AluY SINE Alu -7 304 2 1486 148 100 35 chrX 2174407 2174488 -174799652 - MSTA LTR MaLR -256 172 98 2578 163 28 79 chrX 2174933 2175542 -174798598 - L1MB3 LINE L1 -4 6179 5602 1689 180 28 71 chrX 2175519 2175612 -174798528 - L1MB3 LINE L1 -1755 4391 4296 * 1968 137 46 0 chrX 2175612 2175897 -174798243 - AluSx SINE Alu -14 298 1 1689 180 28 71 chrX 2175897 2175944 -174798196 - L1MB3 LINE L1 -1850 4296 4249 1895 115 0 95 chrX 2175944 2176282 -174797858 - AluSx SINE Alu -6 306 1 1689 180 28 71 chrX 2176282 2176673 -174797467 - L1MB3 LINE L1 -1897 4249 3882 1863 157 43 4 chrX 2177328 2177608 -174796532 + AluSx SINE Alu 1 291 -21 2256 97 0 19 chrX 2177714 2178022 -174796118 + AluY SINE Alu 1 302 -9 804 261 0 0 chrX 2178132 2178297 -174795843 - AluJb SINE Alu -11 301 137 2190 104 3 14 chrX 2178430 2178727 -174795413 - AluSx SINE Alu -18 294 1 358 317 6 19 chrX 2178895 2179220 -174794920 + (CA)n Simple_repeat Simple_repeat 1 320 0 367 296 0 28 chrX 2179472 2179648 -174794492 + (CA)n Simple_repeat Simple_repeat 1 171 0 1453 229 65 86 chrX 2180121 2180567 -174793573 - MER67D LTR ERV1 0 514 79 1995 169 40 33 chrX 2180567 2180756 -174793384 + L1MA4 LINE L1 5847 6033 -267 1721 157 0 0 chrX 2180756 2181005 -174793135 - AluJo SINE Alu -16 296 48 1995 169 40 33 chrX 2181005 2181265 -174792875 + L1MA4 LINE L1 6033 6299 -1 1453 229 65 86 chrX 2181265 2181343 -174792797 - MER67D LTR ERV1 -435 79 1 2391 109 34 14 chrX 2181383 2181740 -174792400 + THE1B LTR MaLR 1 364 0 465 137 0 0 chrX 2181791 2181864 -174792276 - AluJo SINE Alu -6 306 234 1183 160 48 0 chrX 2182247 2182434 -174791706 - AluJo SINE Alu -69 243 48 2182 117 7 23 chrX 2182661 2182970 -174791170 - AluSx SINE Alu -8 304 1 1884 127 67 11 chrX 2183195 2183479 -174790661 + AluSx SINE Alu 3 302 -10 315 128 51 26 chrX 2183726 2183843 -174790297 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 3178 169 50 13 chrX 2183874 2184496 -174789644 + L1PB4 LINE L1 5499 6143 -13 1323 201 18 25 chrX 2185038 2185322 -174788818 + AluJo SINE Alu 7 288 -24 273 235 25 12 chrX 2185613 2185694 -174788446 - MLT1C LTR MaLR -4 463 382 2390 57 0 0 chrX 2186531 2186829 -174787311 - AluY SINE Alu -13 298 1 692 92 20 0 chrX 2187663 2187761 -174786379 + FLAM_C SINE Alu 23 122 -21 2298 81 3 0 chrX 2187769 2188076 -174786064 - AluSx SINE Alu -4 308 1 1478 194 7 0 chrX 2188096 2188380 -174785760 + AluJo SINE Alu 3 288 -24 757 71 50 0 chrX 2188984 2189083 -174785057 - AluSq/x SINE Alu -205 108 5 1339 158 41 15 chrX 2189099 2189365 -174784775 + L1MA8 LINE L1 6017 6289 -2 2207 109 0 0 chrX 2189375 2189677 -174784463 + AluSx SINE Alu 1 302 -10 1582 138 30 0 chrX 2189707 2189976 -174784164 - L1MA5A LINE L1 0 6297 6021 1717 147 97 27 chrX 2190314 2190597 -174783543 + MLT1A1 LTR MaLR 1 314 -51 1576 83 12 51 chrX 2190597 2190850 -174783290 + MER75B DNA T2_type 1 243 0 1717 147 97 27 chrX 2190850 2190906 -174783234 + MLT1A1 LTR MaLR 314 365 0 1072 151 0 0 chrX 2191027 2191199 -174782941 - AluSq SINE Alu 0 313 142 1051 184 71 21 chrX 2191358 2191597 -174782543 - AluJb SINE Alu -59 253 3 1321 172 78 54 chrX 2191771 2192067 -174782073 - AluJo SINE Alu -9 303 1 1215 176 9 0 chrX 2192162 2192372 -174781768 - L1PA16 LINE L1 -9 6157 5946 204 209 0 47 chrX 2193143 2193229 -174780911 + (TTTG)n Simple_repeat Simple_repeat 2 83 0 * 221 134 60 45 chrX 2193169 2193236 -174780904 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 3685 131 23 29 chrX 2193405 2193482 -174780658 - L1PA16 LINE L1 -24 6142 6066 2001 186 41 117 chrX 2193482 2194142 -174779998 - LTR9 LTR ERV1 0 612 3 3685 131 23 29 chrX 2194142 2194382 -174779758 - L1PA16 LINE L1 -100 6066 5166 609 279 59 50 chrX 2194382 2194657 -174779483 - L1MD3 LINE L1 -2169 5826 5546 2625 74 148 3 chrX 2194657 2195048 -174779092 + LTR7 LTR ERV1 1 448 -2 609 279 59 50 chrX 2195048 2195130 -174779010 - L1MD3 LINE L1 -2449 5546 5466 549 61 0 49 chrX 2195436 2195487 -174778653 - MADE1 DNA Mariner -1 79 27 1799 153 0 0 chrX 2195487 2195768 -174778372 + AluSx SINE Alu 1 281 -31 243 0 0 0 chrX 2195769 2195796 -174778344 + (CA)n Simple_repeat Simple_repeat 2 28 0 549 61 0 49 chrX 2195796 2195824 -174778316 - MADE1 DNA Mariner -52 28 2 374 120 0 0 chrX 2196801 2196851 -174777289 + Alu SINE Alu 1 50 -250 352 120 0 0 chrX 2196886 2196936 -174777204 + Alu SINE Alu 1 50 -250 1617 99 0 5 chrX 2196971 2197194 -174776946 + AluSq SINE Alu 1 222 -91 218 146 42 0 chrX 2197208 2197256 -174776884 + G-rich Low_complexity Low_complexity 2 51 0 1230 109 6 0 chrX 2197422 2197596 -174776544 + AluSg/x SINE Alu 122 296 -16 1366 212 7 0 chrX 2197698 2197986 -174776154 - AluJo SINE Alu -22 290 1 1801 216 49 28 chrX 2198065 2198100 -174776040 - L1MB5 LINE L1 -8 6166 6133 2143 125 0 0 chrX 2198100 2198411 -174775729 - AluSx SINE Alu 0 312 2 1801 216 49 28 chrX 2198411 2198805 -174775335 - L1MB5 LINE L1 -41 6133 5728 329 54 0 0 chrX 2199291 2199393 -174774747 - Alu SINE Alu 0 325 234 270 204 0 56 chrX 2199391 2199437 -174774703 - AluSg/x SINE Alu -123 177 133 * 1934 160 0 0 chrX 2199437 2199744 -174774396 - AluSx SINE Alu -5 307 1 24 32 0 0 chrX 2199751 2199782 -174774358 + AT_rich Low_complexity Low_complexity 1 31 0 3225 135 4 4 chrX 2199782 2200301 -174773839 - L1PA16 LINE L1 -1 6165 5647 2193 229 7 37 chrX 2200314 2200439 -174773701 - L1MB7 LINE L1 -9 6175 6048 2113 105 10 0 chrX 2200439 2200745 -174773395 - AluSx SINE Alu -3 309 1 2193 229 7 37 chrX 2200745 2201182 -174772958 - L1MB7 LINE L1 -136 6048 5630 342 309 63 37 chrX 2201184 2201375 -174772765 + MIR SINE MIR 67 262 0 653 182 108 140 chrX 2201473 2201808 -174772332 + MLT1C LTR MaLR 1 324 -143 741 203 98 87 chrX 2201817 2202103 -174772037 + MLT1C LTR MaLR 45 333 -134 675 200 21 28 chrX 2202361 2202506 -174771634 + MLT1C LTR MaLR 316 459 -8 969 129 0 0 chrX 2202549 2202689 -174771451 + AluJo SINE Alu 2 141 -171 2117 109 0 22 chrX 2202689 2203002 -174771138 + AluSx SINE Alu 1 306 -6 2071 112 20 0 chrX 2203010 2203315 -174770825 + AluSx SINE Alu 1 311 -1 1285 178 5 0 chrX 2203423 2203642 -174770498 + AluJo SINE Alu 1 220 -92 237 214 0 18 chrX 2203642 2203698 -174770442 + AluJb SINE Alu 86 140 -162 1337 163 96 4 chrX 2203701 2203952 -174770188 + AluJo SINE Alu 9 282 -30 697 136 36 0 chrX 2205009 2205119 -174769021 + FLAM_C SINE Alu 12 125 -18 600 159 28 9 chrX 2205122 2205229 -174768911 - L1MB3 LINE L1 -10 6173 6065 1455 186 4 8 chrX 2205378 2205642 -174768498 - AluJo SINE Alu -45 267 5 736 217 63 10 chrX 2205796 2205991 -174768149 + MLT1B LTR MaLR 1 197 -177 902 186 50 25 chrX 2205991 2206190 -174767950 - L1MB1 LINE L1 -12 6156 5953 767 214 0 0 chrX 2206228 2206368 -174767772 + MLT1B LTR MaLR 193 332 -58 1981 121 175 22 chrX 2206456 2206827 -174767313 - MSTA LTR MaLR 0 428 1 2681 184 29 6 chrX 2207149 2207665 -174766475 + L1MB1 LINE L1 5586 6113 -76 2480 94 9 0 chrX 2207665 2208003 -174766137 + L1PB1 LINE L1 5800 6144 -7 377 174 43 0 chrX 2208024 2208093 -174766047 + L1MB1 LINE L1 6092 6163 -5 22 0 0 0 chrX 2208415 2208437 -174765703 + AT_rich Low_complexity Low_complexity 1 22 0 213 132 0 0 chrX 2208919 2208957 -174765183 + (TCC)n Simple_repeat Simple_repeat 3 40 0 255 86 17 35 chrX 2209164 2209222 -174764918 + (TCC)n Simple_repeat Simple_repeat 1 57 0 615 206 12 8 chrX 2209243 2209480 -174764660 + CT-rich Low_complexity Low_complexity 1 237 0 1230 203 31 157 chrX 2209704 2209754 -174764386 + L1MB5 LINE L1 5613 5668 -506 1783 114 96 7 chrX 2209754 2210034 -174764106 + AluSx SINE Alu 1 305 -7 708 170 0 30 chrX 2210044 2210179 -174763961 + FLAM_C SINE Alu 1 131 -2 1230 203 31 157 chrX 2210179 2210239 -174763901 + L1MB5 LINE L1 5678 5744 -430 1784 158 10 0 chrX 2210239 2210542 -174763598 + AluJb SINE Alu 1 306 -6 1230 203 31 157 chrX 2210542 2210907 -174763233 + L1MB5 LINE L1 5744 6004 -170 2284 94 0 0 chrX 2210907 2211206 -174762934 + AluSx SINE Alu 6 304 -8 1230 203 31 157 chrX 2211206 2211356 -174762784 + L1MB5 LINE L1 6004 6171 -3 4414 135 12 25 chrX 2211825 2212545 -174761595 - MER50 LTR ERV1 -23 711 1 2496 73 0 0 chrX 2212549 2212863 -174761277 + MER41A LTR ERV1 1 314 -240 282 116 0 0 chrX 2213308 2213351 -174760789 + (T)n Simple_repeat Simple_repeat 1 43 0 712 216 9 0 chrX 2213991 2214139 -174760001 + L1MB2 LINE L1 5772 5930 -232 2284 122 20 58 chrX 2214141 2214293 -174759847 - LTR56 LTR ERV1 0 445 289 966 154 0 0 chrX 2214293 2214442 -174759698 - FRAM SINE Alu -17 149 1 2284 122 20 58 chrX 2214442 2214761 -174759379 - LTR56 LTR ERV1 -156 289 9 285 247 27 0 chrX 2214767 2214850 -174759290 + L1MB2 LINE L1 5928 6012 -167 1655 168 7 3 chrX 2214929 2215220 -174758920 + AluJb SINE Alu 21 312 0 1337 140 5 10 chrX 2215253 2215460 -174758680 + THE1B LTR MaLR 159 364 0 4130 134 11 11 chrX 2215555 2215996 -174758144 + MER41B LTR ERV1 1 444 -191 1963 173 16 16 chrX 2215996 2216371 -174757769 - THE1C LTR MaLR 0 375 1 4130 134 11 11 chrX 2216371 2216564 -174757576 + MER41B LTR ERV1 443 635 0 469 160 21 0 chrX 2217077 2217171 -174756969 + LTR26 LTR ERV1 1 96 -507 799 282 7 22 chrX 2217431 2217548 -174756592 + L1MD2 LINE L1 6077 6194 -165 1997 134 44 49 chrX 2217548 2217914 -174756226 + THE1B LTR MaLR 1 364 0 799 282 7 22 chrX 2217914 2218073 -174756067 + L1MD2 LINE L1 6194 6349 -10 3008 201 36 30 chrX 2218339 2218981 -174755159 + MER82 DNA MER2_type 7 652 -1 290 317 99 32 chrX 2218988 2219396 -174754744 + MLT1E LTR MaLR 20 499 -96 640 191 95 0 chrX 2220821 2220947 -174753193 - MLT1E1 LTR MaLR -110 544 407 1927 178 31 3 chrX 2221310 2221665 -174752475 - MLT1A1 LTR MaLR 0 365 1 2185 231 77 58 chrX 2221972 2222436 -174751704 - MLT1E1 LTR MaLR 0 654 173 1979 87 53 20 chrX 2222436 2222736 -174751404 - AluSq SINE Alu -1 312 3 2185 231 77 58 chrX 2222736 2222907 -174751233 - MLT1E1 LTR MaLR -481 173 7 3580 156 114 36 chrX 2222907 2223655 -174750485 - L1PA16 LINE L1 -18 6148 5343 2064 98 11 0 chrX 2223661 2223972 -174750168 + AluSx SINE Alu 1 314 0 958 144 0 54 chrX 2223972 2224186 -174749954 + AluSg/x SINE Alu 124 328 0 2347 74 3 3 chrX 2225098 2225407 -174748733 - AluSx SINE Alu -3 309 1 3422 92 54 75 chrX 2225465 2225683 -174748457 + L1PA16 LINE L1 5569 5790 -376 2145 89 20 3 chrX 2225683 2225987 -174748153 + AluSg SINE Alu 1 309 -1 3422 92 54 75 chrX 2225987 2226377 -174747763 + L1PA16 LINE L1 5790 6164 -2 2524 55 0 0 chrX 2226392 2226703 -174747437 + AluY SINE Alu 1 311 0 510 299 77 30 chrX 2226749 2226983 -174747157 + MLT1J LTR MaLR 266 510 -1 2378 178 17 5 chrX 2227634 2228056 -174746084 + MSTB1 LTR MaLR 6 432 0 1585 113 20 24 chrX 2228279 2228526 -174745614 + AluJo SINE Alu 50 295 -17 2352 81 0 0 chrX 2228970 2229265 -174744875 + AluSq SINE Alu 3 297 -16 1029 190 44 0 chrX 2229541 2229767 -174744373 + L1MB5 LINE L1 5939 6174 0 4018 110 2 2 chrX 2230059 2230613 -174743527 + MER41A LTR ERV1 1 554 0 1787 205 9 36 chrX 2230778 2231188 -174742952 + L1MC2 LINE L1 5937 6337 -7 1955 117 11 65 chrX 2231188 2231539 -174742601 + L1PB2 LINE L1 5817 6148 -3 2098 104 0 24 chrX 2231696 2231983 -174742157 + AluSx SINE Alu 1 280 -32 258 32 0 0 chrX 2231985 2232016 -174742124 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 225 94 0 0 chrX 2232051 2232083 -174742057 + (ATG)n Simple_repeat Simple_repeat 2 33 0 1438 126 44 139 chrX 2232084 2232219 -174741921 + AluJo SINE Alu 1 90 -222 2256 112 3 3 chrX 2232219 2232523 -174741617 + AluSg SINE Alu 1 304 -6 1438 126 44 139 chrX 2232523 2232704 -174741436 + AluJo SINE Alu 90 287 -25 2300 112 0 0 chrX 2233201 2233497 -174740643 - AluSx SINE Alu -16 296 1 906 125 0 8 chrX 2233523 2233651 -174740489 + FLAM_C SINE Alu 1 127 -16 899 239 126 60 chrX 2234351 2234535 -174739605 + L1ME3A LINE L1 5145 5315 -855 2266 117 0 0 chrX 2234535 2234835 -174739305 + AluSx SINE Alu 1 300 -12 899 239 126 60 chrX 2234835 2234846 -174739294 + L1ME3A LINE L1 5315 5324 -846 2080 142 7 3 chrX 2234846 2235155 -174738985 + AluSx SINE Alu 1 310 -2 899 239 126 60 chrX 2235155 2235612 -174738528 + L1ME3A LINE L1 5324 5858 -312 * 1990 217 41 29 chrX 2235225 2235713 -174738427 + L1MA3 LINE L1 5477 5970 -335 * 3970 126 35 0 chrX 2235280 2235884 -174738256 + L1PA16 LINE L1 5522 6146 -20 849 192 18 0 chrX 2235893 2236060 -174738080 + L1MB3 LINE L1 5428 5597 -577 406 143 16 0 chrX 2236060 2236123 -174738017 + Charlie1 DNA MER1_type 2697 2760 -1 856 222 6 6 chrX 2236504 2236684 -174737456 + MER58A DNA MER1_type 45 224 0 2201 193 30 17 chrX 2236891 2237353 -174736787 + MER89 LTR ERV1 1 468 -91 519 186 28 11 chrX 2237417 2237594 -174736546 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 682 166 29 0 chrX 2237654 2237829 -174736311 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 307 208 42 0 chrX 2237843 2237963 -174736177 + (TGGA)n Simple_repeat Simple_repeat 3 127 0 615 153 5 53 chrX 2237982 2238171 -174735969 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 397 218 11 0 chrX 2238183 2238270 -174735870 + MER89 LTR ERV1 472 559 0 23 54 0 0 chrX 2239123 2239160 -174734980 + AT_rich Low_complexity Low_complexity 1 37 0 1660 196 3 20 chrX 2239396 2239697 -174734443 - AluJo SINE Alu -16 296 1 581 174 22 28 chrX 2240490 2240817 -174733323 + (TCCA)n Simple_repeat Simple_repeat 1 325 0 2837 202 50 5 chrX 2241011 2241596 -174732544 + L1MB3 LINE L1 5566 6176 -7 491 225 0 5 chrX 2242051 2242273 -174731867 + (TGGA)n Simple_repeat Simple_repeat 1 220 0 253 215 25 33 chrX 2242247 2242368 -174731772 + (TGAA)n Simple_repeat Simple_repeat 4 123 0 * 478 242 6 6 chrX 2242402 2242580 -174731560 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 625 217 7 0 chrX 2242595 2242873 -174731267 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 801 170 0 11 chrX 2242898 2243270 -174730870 + (TGGA)n Simple_repeat Simple_repeat 1 367 0 312 352 0 0 chrX 2243271 2243362 -174730778 + (TGGG)n Simple_repeat Simple_repeat 1 91 0 705 208 0 0 chrX 2243363 2243531 -174730609 + (TGGA)n Simple_repeat Simple_repeat 2 169 0 471 202 0 0 chrX 2243543 2243657 -174730483 + (TGGA)n Simple_repeat Simple_repeat 2 115 0 192 77 0 0 chrX 2243667 2243693 -174730447 + (TG)n Simple_repeat Simple_repeat 1 26 0 2719 45 0 0 chrX 2244408 2244719 -174729421 - AluY SINE Alu 0 311 1 685 58 8 91 chrX 2244721 2244842 -174729298 + LTR36 LTR ERV1 11 121 -490 2279 79 3 0 chrX 2244843 2245134 -174729006 + AluY SINE Alu 1 292 -19 1169 127 12 0 chrX 2245134 2245300 -174728840 + LTR36 LTR ERV1 444 611 0 2242 116 0 3 chrX 2245532 2245833 -174728307 + AluSx SINE Alu 1 300 -12 2154 119 16 0 chrX 2245859 2246162 -174727978 + AluSx SINE Alu 1 308 -4 1834 198 98 30 chrX 2246636 2246761 -174727379 - MLT1D LTR MaLR -2 503 388 1730 170 3 7 chrX 2246761 2247044 -174727096 + AluJo SINE Alu 1 282 -30 1834 198 98 30 chrX 2247044 2247389 -174726751 - MLT1D LTR MaLR -117 388 1 484 168 11 0 chrX 2247537 2247632 -174726508 - L1PA11 LINE L1 0 6174 6079 444 164 0 0 chrX 2247632 2247705 -174726435 - L1P4 LINE L1 -680 5488 5416 * 4556 127 13 1 chrX 2247681 2248357 -174725783 - L1PA11 LINE L1 -81 6093 5410 1157 171 9 28 chrX 2248645 2248856 -174725284 + AluJo SINE Alu 87 293 -19 1116 124 74 109 chrX 2248869 2249152 -174724988 + L1MA8 LINE L1 6019 6291 0 207 281 0 0 chrX 2249174 2249238 -174724902 + A-rich Low_complexity Low_complexity 1 64 0 2314 102 0 0 chrX 2249238 2249531 -174724609 + AluSx SINE Alu 1 293 -19 674 186 0 0 chrX 2249617 2249730 -174724410 + FLAM_A SINE Alu 25 137 -5 2172 133 0 0 chrX 2249754 2250055 -174724085 - AluSx SINE Alu -11 301 1 605 173 27 0 chrX 2250184 2250293 -174723847 - MLT1D LTR MaLR -6 499 388 2085 145 117 25 chrX 2250293 2250656 -174723484 - MSTA LTR MaLR 0 428 25 2746 89 14 3 chrX 2250656 2251025 -174723115 + THE1C LTR MaLR 3 375 0 2085 145 117 25 chrX 2251025 2251053 -174723087 - MSTA LTR MaLR -403 25 1 1831 220 32 3 chrX 2251053 2251430 -174722710 - MLT1D LTR MaLR -113 392 5 964 162 52 0 chrX 2251762 2251916 -174722224 - AluJo SINE Alu -30 282 121 52 0 0 0 chrX 2251948 2252000 -174722140 + AT_rich Low_complexity Low_complexity 1 52 0 4479 148 3 1 chrX 2252012 2252709 -174721431 + L1PA15 LINE L1 5467 6164 -1 2123 86 61 0 chrX 2252714 2252993 -174721147 + AluSx SINE Alu 1 296 -16 186 43 0 0 chrX 2253013 2253036 -174721104 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1413 206 11 11 chrX 2253038 2253320 -174720820 - AluJo SINE Alu -30 282 1 401 322 117 23 chrX 2253438 2253588 -174720552 - HAL1 LINE L1 -145 2362 2227 321 26 0 0 chrX 2253588 2253626 -174720514 + (CA)n Simple_repeat Simple_repeat 1 38 0 401 322 117 23 chrX 2253626 2253990 -174720150 - HAL1 LINE L1 -280 2227 1800 192 279 0 51 chrX 2254011 2254090 -174720050 + MIR SINE MIR 82 156 -106 376 236 115 115 chrX 2254171 2254510 -174719630 - HAL1 LINE L1 -698 1809 1471 2384 96 0 0 chrX 2254524 2254825 -174719315 - AluSx SINE Alu -11 301 1 433 208 3 44 chrX 2254833 2255137 -174719003 + CT-rich Low_complexity Low_complexity 1 291 0 1794 159 7 17 chrX 2255288 2255590 -174718550 + AluJb SINE Alu 1 299 -13 273 29 0 0 chrX 2255954 2255988 -174718152 + (TG)n Simple_repeat Simple_repeat 1 34 0 1935 140 25 3 chrX 2256075 2256396 -174717744 + MLT1A1 LTR MaLR 1 328 -37 257 221 13 39 chrX 2256780 2256857 -174717283 + L1M3 LINE L1 5633 5707 -473 1791 185 7 7 chrX 2256917 2257214 -174716926 - AluJb SINE Alu -15 297 1 2124 117 0 0 chrX 2257226 2257531 -174716609 - AluSx SINE Alu 0 305 1 1610 96 9 0 chrX 2257537 2257767 -174716373 - L1PA14 LINE L1 -2 6159 5928 303 49 0 0 chrX 2258120 2258161 -174715979 + (TA)n Simple_repeat Simple_repeat 2 42 0 258 111 0 0 chrX 2258161 2258201 -174715939 + (GA)n Simple_repeat Simple_repeat 1 40 0 1674 96 23 0 chrX 2258390 2258610 -174715530 - AluSg/x SINE Alu -4 308 84 1719 185 3 3 chrX 2258620 2258923 -174715217 - AluJo SINE Alu -9 303 1 1810 166 13 17 chrX 2259025 2259326 -174714814 + AluJo SINE Alu 1 300 -12 189 0 0 0 chrX 2259495 2259516 -174714624 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 979 192 6 0 chrX 2259944 2260126 -174714014 - AluJo SINE Alu -7 305 123 249 177 32 32 chrX 2260163 2260207 -174713933 - L1M LINE L1 -2398 5410 5364 1948 115 21 10 chrX 2260207 2260495 -174713645 - AluSx SINE Alu -21 291 1 249 177 32 32 chrX 2260495 2260512 -174713628 - L1M LINE L1 -2443 5365 5349 554 67 0 0 chrX 2260555 2260630 -174713510 - L1PA5 LINE L1 0 6154 6080 4389 141 53 87 chrX 2260630 2261105 -174713035 - L1MC1 LINE L1 -2 6331 5841 1948 153 40 0 chrX 2261105 2261405 -174712735 - AluJo SINE Alu 0 312 1 4389 141 53 87 chrX 2261405 2261466 -174712674 - L1MC1 LINE L1 -492 5841 5779 2437 93 0 0 chrX 2261466 2261768 -174712372 - AluSg SINE Alu -8 302 1 2319 100 3 3 chrX 2261770 2262081 -174712059 - AluSx SINE Alu -1 311 1 4389 141 53 87 chrX 2262081 2262491 -174711649 - L1MC1 LINE L1 -555 5778 5414 523 277 128 36 chrX 2262494 2262692 -174711448 - L1ME3A LINE L1 -224 5946 5768 2227 141 30 22 chrX 2262692 2263053 -174711087 + THE1B LTR MaLR 1 364 0 523 277 128 36 chrX 2263053 2263403 -174710737 - L1ME3A LINE L1 -402 5768 5337 2093 139 3 0 chrX 2263419 2263713 -174710427 - AluJo SINE Alu -13 299 5 336 304 172 25 chrX 2263715 2264430 -174709710 - L1ME3A LINE L1 -2064 4082 3247 1471 116 9 9 chrX 2264430 2264646 -174709494 - AluSq SINE Alu -16 297 82 336 304 172 25 chrX 2264646 2264691 -174709449 - L1ME3A LINE L1 -2899 3247 3210 43 108 0 0 chrX 2264697 2264873 -174709267 + AT_rich Low_complexity Low_complexity 1 176 0 919 231 30 0 chrX 2265926 2266125 -174708015 + MER2 DNA MER2_type 1 205 -140 1139 161 9 28 chrX 2266127 2266338 -174707802 - AluJo SINE Alu -10 302 96 * 1299 131 0 53 chrX 2266336 2266542 -174707598 - AluSx SINE Alu -117 195 1 1057 128 0 0 chrX 2266841 2266989 -174707151 + FRAM SINE Alu 11 158 -18 672 194 7 28 chrX 2267241 2267385 -174706755 - MLT1C LTR MaLR 0 467 327 4363 153 33 30 chrX 2267385 2267505 -174706635 - LTR39 LTR ERV1 -28 755 637 1942 169 0 0 chrX 2267505 2267813 -174706327 + AluJb SINE Alu 1 308 -4 2307 62 0 36 chrX 2267813 2268117 -174706023 + AluY SINE Alu 1 293 -18 4363 153 33 30 chrX 2268117 2268748 -174705392 - LTR39 LTR ERV1 -145 638 1 3133 100 27 11 chrX 2268749 2269063 -174705077 + MER41B LTR ERV1 1 326 -309 1710 168 58 9 chrX 2269063 2269390 -174704750 + MER61A LTR ERV1 1 343 0 3133 100 27 11 chrX 2269390 2269524 -174704616 + MER41B LTR ERV1 326 456 -179 868 139 0 29 chrX 2269527 2269664 -174704476 + AluSg/x SINE Alu 165 297 -15 2298 103 0 0 chrX 2269686 2269978 -174704162 + AluSx SINE Alu 2 293 -19 729 219 2 26 chrX 2270125 2270253 -174703887 - L1MB3 LINE L1 -212 5956 5835 2243 98 10 7 chrX 2270253 2270558 -174703582 - AluSq SINE Alu -7 306 1 729 219 2 26 chrX 2270558 2270639 -174703501 - L1MB3 LINE L1 -333 5835 5754 612 220 22 78 chrX 2270698 2270930 -174703210 + MER20 DNA MER1_type 1 219 0 1985 125 14 3 chrX 2271137 2271426 -174702714 - AluSx SINE Alu -20 292 1 231 170 0 0 chrX 2271534 2271581 -174702559 + L1MC4 LINE L1 6659 6705 -1337 2400 86 3 3 chrX 2271756 2272060 -174702080 + AluSx SINE Alu 1 304 -8 2248 107 0 0 chrX 2272179 2272470 -174701670 - AluSx SINE Alu -21 291 1 1260 184 99 64 chrX 2272564 2272698 -174701442 + AluJo SINE Alu 1 129 -183 185 0 40 0 chrX 2272698 2272723 -174701417 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1260 184 99 64 chrX 2272723 2272870 -174701270 + AluJo SINE Alu 129 292 -20 1435 211 43 0 chrX 2274226 2274525 -174699615 - AluJo SINE Alu 0 312 1 2161 98 0 0 chrX 2274709 2274983 -174699157 + AluSx SINE Alu 1 274 -38 2419 76 3 17 chrX 2274985 2275287 -174698853 - AluSq SINE Alu -15 298 1 1348 144 5 5 chrX 2275289 2275497 -174698643 + AluJb SINE Alu 102 309 -3 2272 88 0 14 chrX 2275767 2276064 -174698076 - AluSc SINE Alu -16 293 1 30 0 0 0 chrX 2276075 2276105 -174698035 + AT_rich Low_complexity Low_complexity 1 30 0 870 122 0 29 chrX 2276107 2276246 -174697894 - L1MA2 LINE L1 0 6304 6170 1598 199 0 0 chrX 2276265 2276531 -174697609 - AluJo SINE Alu -24 288 23 2445 104 0 0 chrX 2277013 2277322 -174696818 - AluSx SINE Alu -3 309 1 886 156 0 21 chrX 2277413 2277554 -174696586 + FLAM_C SINE Alu 1 138 -5 2586 54 0 0 chrX 2277621 2277918 -174696222 + AluY SINE Alu 1 297 -14 2118 110 0 4 chrX 2278066 2278380 -174695760 + AluSg SINE Alu 1 313 0 195 42 0 0 chrX 2279232 2279256 -174694884 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1801 184 0 7 chrX 2279278 2279577 -174694563 + AluJo SINE Alu 1 297 -15 330 87 0 0 chrX 2279851 2279897 -174694243 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 1793 178 10 24 chrX 2279897 2280195 -174693945 - AluJo SINE Alu -18 294 1 1536 165 3 93 chrX 2280680 2281013 -174693127 + AluJo SINE Alu 1 303 -9 1374 144 137 46 chrX 2281223 2281486 -174692654 - AluJo SINE Alu -17 295 9 183 100 0 0 chrX 2282239 2282269 -174691871 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2430 85 0 0 chrX 2282272 2282591 -174691549 - L1PA13 LINE L1 -19 6144 5826 198 0 0 0 chrX 2282591 2282613 -174691527 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1164 196 36 5 chrX 2282613 2282833 -174691307 - AluJo SINE Alu -28 284 58 2394 89 0 3 chrX 2282842 2283144 -174690996 - AluY SINE Alu -10 301 1 1923 117 3 57 chrX 2283180 2283508 -174690632 - AluSq SINE Alu 0 316 5 215 163 0 20 chrX 2284289 2284338 -174689802 + T-rich Low_complexity Low_complexity 2 49 0 305 314 0 59 chrX 2284880 2284982 -174689158 + L1MC4 LINE L1 6614 6709 -1333 * 324 252 37 30 chrX 2284903 2285018 -174689122 - L1MCa LINE L1 -1337 6985 1973 234 154 66 22 chrX 2285056 2285147 -174688993 + (TA)n Simple_repeat Simple_repeat 1 95 0 1383 72 0 0 chrX 2285156 2285322 -174688818 + AluSg SINE Alu 1 166 -144 682 158 9 11 chrX 2285338 2285499 -174688641 + L1PB4 LINE L1 5782 5901 -255 25 102 0 0 chrX 2285499 2285587 -174688553 + AT_rich Low_complexity Low_complexity 1 88 0 316 194 0 82 chrX 2285590 2285688 -174688452 - L1MC4 LINE L1 -1339 6703 6614 183 129 0 0 chrX 2285688 2285719 -174688421 + (CA)n Simple_repeat Simple_repeat 2 32 0 1265 163 112 47 chrX 2285765 2286041 -174688099 - AluJb SINE Alu -8 294 1 281 229 33 57 chrX 2287265 2287387 -174686753 + MER53 DNA DNA 37 155 -34 314 297 69 14 chrX 2287498 2287643 -174686497 - L1MD2 LINE L1 -1 6358 6206 1048 110 0 14 chrX 2287818 2287963 -174686177 + AluSq/x SINE Alu 1 143 -169 30 45 0 0 chrX 2288387 2288431 -174685709 + GC_rich Low_complexity Low_complexity 1 44 0 315 243 20 15 chrX 2290020 2290227 -174683913 + CT-rich Low_complexity Low_complexity 1 208 0 2069 102 0 7 chrX 2291282 2291557 -174682583 + AluSx SINE Alu 1 273 -39 1620 183 23 20 chrX 2291868 2292169 -174681971 + AluJb SINE Alu 1 302 -10 374 297 61 0 chrX 2292586 2292751 -174681389 - L1MD3 LINE L1 -19 7976 7802 1121 129 0 23 chrX 2292752 2292923 -174681217 - FRAM SINE Alu -10 166 1 344 260 7 84 chrX 2292923 2293077 -174681063 - L1MD2 LINE L1 -176 6183 6042 2108 99 57 0 chrX 2293091 2293373 -174680767 - AluSp SINE Alu -15 298 1 2052 164 23 3 chrX 2293584 2293938 -174680202 - MLT1A1 LTR MaLR -4 361 1 209 106 0 64 chrX 2294288 2294335 -174679805 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 449 167 0 0 chrX 2294365 2294437 -174679703 - FLAM_A SINE Alu -26 116 45 199 333 30 30 chrX 2294439 2294538 -174679602 + L2 LINE L2 3191 3289 -24 315 286 95 19 chrX 2294556 2294661 -174679479 + MER81 DNA DNA 1 113 -1 1885 148 7 13 chrX 2294802 2295106 -174679034 - AluJb SINE Alu -4 308 7 728 157 35 0 chrX 2295345 2295460 -174678680 + AluJb SINE Alu 176 294 -18 1722 162 17 24 chrX 2295469 2295766 -174678374 + AluJo SINE Alu 1 295 -17 2469 64 0 19 chrX 2295964 2296275 -174677865 + AluY SINE Alu 1 305 -6 1737 194 14 14 chrX 2296529 2296879 -174677261 + MLT1A1 LTR MaLR 14 363 -2 240 292 0 0 chrX 2296969 2297034 -174677106 - MLT1E2 LTR MaLR 0 626 562 1285 169 8 8 chrX 2297036 2297284 -174676856 + L1MA6 LINE L1 5675 5922 -378 1699 142 31 17 chrX 2297285 2297573 -174676567 - AluJb SINE Alu -20 292 1 2101 134 3 13 chrX 2297984 2298298 -174675842 + AluSx SINE Alu 1 311 -1 1132 124 0 28 chrX 2298649 2298826 -174675314 - FRAM SINE Alu -9 167 1 1730 179 10 17 chrX 2298972 2299268 -174674872 + AluJb SINE Alu 13 306 -6 4199 101 0 0 chrX 2299825 2300379 -174673761 - MER41A LTR ERV1 0 554 1 1897 168 24 0 chrX 2300557 2300855 -174673285 + AluJo SINE Alu 8 312 0 1671 158 39 32 chrX 2301053 2301183 -174672957 + AluJb SINE Alu 1 129 -183 207 0 0 0 chrX 2301183 2301206 -174672934 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1671 158 39 32 chrX 2301206 2301385 -174672755 + AluJb SINE Alu 129 312 0 189 196 0 0 chrX 2301393 2301439 -174672701 + A-rich Low_complexity Low_complexity 1 46 0 315 296 22 7 chrX 2301570 2301705 -174672435 - L1M4 LINE L1 -2910 3236 3100 2285 107 0 16 chrX 2302302 2302619 -174671521 + AluSx SINE Alu 1 312 0 2242 112 3 3 chrX 2302620 2302923 -174671217 + AluSx SINE Alu 2 304 -8 263 71 0 0 chrX 2302949 2302991 -174671149 + Alu SINE Alu 258 299 -1 2083 109 6 64 chrX 2303065 2303395 -174670745 + AluSx SINE Alu 1 311 -1 200 100 25 0 chrX 2303408 2303448 -174670692 + (CAA)n Simple_repeat Simple_repeat 2 42 0 784 149 0 71 chrX 2303471 2303612 -174670528 + FLAM_C SINE Alu 3 133 0 1700 179 3 19 chrX 2304105 2304413 -174669727 + AluJo SINE Alu 1 303 -9 1700 187 0 39 chrX 2304572 2304882 -174669258 - AluJb SINE Alu -12 300 3 2003 131 7 0 chrX 2304896 2305218 -174668922 - AluSx SINE Alu 0 324 1 1924 162 17 8 chrX 2305299 2305650 -174668490 + MER47A DNA MER2_type 13 366 0 1897 125 39 0 chrX 2305650 2305961 -174668179 - MLT1A1 LTR MaLR -32 333 11 1984 124 7 0 chrX 2306280 2306555 -174667585 + AluJo SINE Alu 36 312 0 204 363 26 18 chrX 2306746 2306859 -174667281 + L2 LINE L2 2181 2294 -1020 1257 244 64 33 chrX 2306931 2307353 -174666787 - MLT1C LTR MaLR -27 440 6 663 176 60 166 chrX 2307368 2307519 -174666621 - MLT1C LTR MaLR -122 345 180 2177 91 3 30 chrX 2307519 2307847 -174666293 - AluSq SINE Alu 0 313 5 663 176 60 166 chrX 2307847 2307986 -174666154 - MLT1C LTR MaLR -287 180 102 2636 51 0 10 chrX 2307986 2308300 -174665840 - AluY SINE Alu 0 311 1 663 176 60 166 chrX 2308300 2308388 -174665752 - MLT1C LTR MaLR -365 102 6 2564 67 0 0 chrX 2309129 2309428 -174664712 + AluY SINE Alu 1 299 -12 539 219 8 8 chrX 2309429 2309557 -174664583 - MER3 DNA MER1_type -80 129 2 745 238 52 9 chrX 2309567 2309777 -174664363 + MER20 DNA MER1_type 1 219 0 303 191 0 0 chrX 2309795 2309863 -174664277 + CT-rich Low_complexity Low_complexity 1 68 0 307 191 26 17 chrX 2309886 2310001 -174664139 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 237 149 0 21 chrX 2310057 2310104 -174664036 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 308 131 0 16 chrX 2310104 2310165 -174663975 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 737 231 42 46 chrX 2310169 2310385 -174663755 + MER20 DNA MER1_type 1 215 -4 537 237 63 90 chrX 2310556 2310959 -174663181 + LTR15 LTR ERV1 112 596 0 1841 168 7 0 chrX 2311201 2311505 -174662635 - AluJb SINE Alu -6 306 1 347 220 0 20 chrX 2311845 2311945 -174662195 - L1MB7 LINE L1 0 6184 6087 2466 82 0 0 chrX 2311955 2312260 -174661880 - AluY SINE Alu -6 305 1 1640 177 21 7 chrX 2312270 2312553 -174661587 - AluJo SINE Alu -24 288 2 1781 146 13 48 chrX 2313066 2313375 -174660765 - AluJo SINE Alu -14 298 1 2303 104 0 0 chrX 2313495 2313792 -174660348 - AluSx SINE Alu -15 297 1 1530 141 0 4 chrX 2313795 2314022 -174660118 - AluSg/x SINE Alu -2 310 85 1473 149 86 4 chrX 2314658 2314926 -174659214 + AluJo SINE Alu 3 292 -20 685 143 0 61 chrX 2314946 2315093 -174659047 + L1MB3 LINE L1 6045 6182 -1 2326 86 3 10 chrX 2315105 2315406 -174658734 + AluSx SINE Alu 7 305 -7 813 182 8 0 chrX 2315420 2315552 -174658588 + FLAM_C SINE Alu 1 133 0 1900 154 0 7 chrX 2315891 2316190 -174657950 - AluJb SINE Alu -13 299 3 284 253 12 12 chrX 2316267 2316350 -174657790 - L1ME1 LINE L1 -22 6144 6062 264 246 254 7 chrX 2316402 2316540 -174657600 - MIR SINE MIR -12 250 79 501 187 23 12 chrX 2316594 2316765 -174657375 + GA-rich Low_complexity Low_complexity 4 176 0 2253 127 0 6 chrX 2316839 2317153 -174656987 + AluSx SINE Alu 1 312 0 1087 168 24 0 chrX 2317156 2317365 -174656775 + MLT1B LTR MaLR 172 385 -5 2452 90 0 3 chrX 2317674 2317985 -174656155 - AluSg SINE Alu 0 310 1 1868 156 10 16 chrX 2318087 2318401 -174655739 - AluJo SINE Alu 0 312 1 1333 224 68 30 chrX 2318761 2319189 -174654951 - MLT1C LTR MaLR -23 444 1 365 218 223 0 chrX 2319199 2319392 -174654748 - MLT1C LTR MaLR -122 345 110 301 120 0 120 chrX 2319404 2319479 -174654661 - FLAM SINE Alu 0 133 68 258 180 60 0 chrX 2319461 2319511 -174654629 - Alu SINE Alu -247 53 1 * 388 250 10 0 chrX 2319524 2319628 -174654512 - MLT1C LTR MaLR -359 108 4 23 0 0 0 chrX 2320275 2320298 -174653842 + AT_rich Low_complexity Low_complexity 1 23 0 1741 156 21 10 chrX 2320298 2320586 -174653554 - AluSx SINE Alu -21 291 1 1356 175 116 19 chrX 2320588 2320856 -174653284 - AluJb SINE Alu -18 294 1 185 0 40 0 chrX 2320856 2320881 -174653259 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1528 151 7 69 chrX 2320881 2321185 -174652955 - AluJo SINE Alu -27 285 1 2228 97 0 0 chrX 2321512 2321791 -174652349 + AluSx SINE Alu 1 279 -33 306 0 0 0 chrX 2321791 2321825 -174652315 + (CAA)n Simple_repeat Simple_repeat 2 35 0 703 290 74 7 chrX 2322208 2322491 -174651649 - MER46C DNA MER2_type -32 306 5 1922 187 11 6 chrX 2322540 2322899 -174651241 + L1PA16 LINE L1 5806 6166 0 289 275 0 14 chrX 2323045 2323114 -174651026 - MLT1J LTR MaLR -328 183 116 1067 149 17 6 chrX 2324457 2324638 -174649502 + AluJb SINE Alu 129 311 -1 2191 184 13 33 chrX 2324714 2324902 -174649238 - L1MA9 LINE L1 -191 6121 5931 2513 114 3 14 chrX 2324902 2325270 -174648870 - THE1B LTR MaLR 0 364 1 2191 184 13 33 chrX 2325270 2325533 -174648607 - L1MA9 LINE L1 -381 5931 5679 513 126 0 2 chrX 2325919 2326126 -174648014 + AluJo SINE Alu 9 250 -62 329 129 0 16 chrX 2326220 2326282 -174647858 + (GGA)n Simple_repeat Simple_repeat 3 63 0 470 244 6 0 chrX 2326365 2326521 -174647619 + GA-rich Low_complexity Low_complexity 1 157 0 246 105 0 0 chrX 2326942 2326980 -174647160 + (TC)n Simple_repeat Simple_repeat 2 39 0 2078 154 38 3 chrX 2327873 2328217 -174645923 - MLT1A1 LTR MaLR -5 360 5 186 133 0 0 chrX 2328918 2328948 -174645192 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 1299 180 120 11 chrX 2328951 2329218 -174644922 - AluJo SINE Alu -4 298 3 263 191 0 21 chrX 2329264 2329311 -174644829 + MLT1C LTR MaLR 422 467 0 23 54 0 0 chrX 2329713 2329750 -174644390 + AT_rich Low_complexity Low_complexity 1 37 0 893 172 6 0 chrX 2329758 2329921 -174644219 - AluJb SINE Alu -26 286 123 22 56 0 0 chrX 2329921 2329957 -174644183 + AT_rich Low_complexity Low_complexity 1 36 0 1284 201 123 4 chrX 2329982 2330250 -174643890 - AluJo SINE Alu -2 300 1 913 124 0 0 chrX 2330561 2330690 -174643450 + FLAM_C SINE Alu 1 129 -4 1456 132 4 0 chrX 2330704 2330931 -174643209 + AluSg/x SINE Alu 83 310 0 1790 150 3 0 chrX 2331115 2331401 -174642739 + AluJb SINE Alu 5 291 -21 583 266 31 36 chrX 2331878 2332070 -174642070 - MER20 DNA MER1_type -28 191 1 393 216 47 18 chrX 2332071 2332242 -174641898 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 840 204 31 62 chrX 2332352 2332577 -174641563 - MER20 DNA MER1_type -1 218 1 450 0 0 0 chrX 2332589 2332639 -174641501 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 401 131 77 36 chrX 2332680 2332848 -174641292 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 925 224 28 9 chrX 2332858 2333072 -174641068 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chrX 2333548 2333569 -174640571 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chrX 2333760 2333800 -174640340 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chrX 2334682 2334705 -174639435 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chrX 2334959 2334983 -174639157 + AT_rich Low_complexity Low_complexity 1 24 0 1718 166 0 19 chrX 2335023 2335330 -174638810 - AluJo SINE Alu -9 303 3 707 207 0 0 chrX 2335331 2335466 -174638674 - AluJo SINE Alu -176 136 2 2375 69 0 7 chrX 2335500 2335803 -174638337 + AluY SINE Alu 1 301 -10 939 134 0 0 chrX 2335814 2335956 -174638184 + AluSg/x SINE Alu 168 309 -1 2025 175 25 55 chrX 2335962 2336437 -174637703 - L1MB3 LINE L1 -63 6120 5660 1280 170 4 0 chrX 2336460 2336689 -174637451 - AluSg/x SINE Alu -10 302 73 411 218 0 0 chrX 2336761 2336862 -174637278 + (CA)n Simple_repeat Simple_repeat 1 101 0 1855 191 12 29 chrX 2336983 2337397 -174636743 - L1PB4 LINE L1 -1 6155 5749 244 191 29 29 chrX 2337404 2337420 -174636720 + L1P5 LINE L1 5476 5491 -663 1631 183 0 13 chrX 2337420 2337732 -174636408 + AluJo SINE Alu 3 310 -2 244 191 29 29 chrX 2337732 2337783 -174636357 + L1P5 LINE L1 5490 5543 -611 191 263 88 120 chrX 2338129 2338303 -174635837 + L2 LINE L2 2347 2514 -800 1416 222 13 0 chrX 2338303 2338487 -174635653 - AluJo SINE Alu -6 306 115 387 0 0 0 chrX 2338487 2338530 -174635610 + (TG)n Simple_repeat Simple_repeat 2 44 0 1416 222 13 0 chrX 2338530 2338647 -174635493 - AluJo SINE Alu -197 115 1 191 263 88 120 chrX 2338647 2338689 -174635451 + L2 LINE L2 2514 2556 -758 755 169 0 0 chrX 2338817 2338935 -174635205 + AluJo/FLAM SINE Alu 2 119 -193 1466 199 31 0 chrX 2338935 2339227 -174634913 - AluJo SINE Alu -7 305 5 2412 81 0 0 chrX 2339233 2339542 -174634598 - AluY SINE Alu -2 309 1 828 141 15 0 chrX 2339542 2339677 -174634463 - AluJo SINE Alu -175 137 1 1581 167 39 0 chrX 2340346 2340628 -174633512 - AluJo SINE Alu -16 296 4 229 185 31 0 chrX 2341020 2341085 -174633055 + CT-rich Low_complexity Low_complexity 4 70 0 1313 86 11 5 chrX 2342055 2342242 -174631898 + AluSg/x SINE Alu 125 312 0 1514 171 51 14 chrX 2342680 2342973 -174631167 - AluJo SINE Alu -8 304 1 1642 176 3 17 chrX 2343368 2343663 -174630477 + AluJb SINE Alu 1 291 -21 2228 90 7 0 chrX 2343665 2343965 -174630175 + AluSq SINE Alu 1 302 -11 1672 183 13 6 chrX 2344379 2344696 -174629444 - MLT1B LTR MaLR 0 390 72 1280 229 42 11 chrX 2344832 2345186 -174628954 + MLT1A1 LTR MaLR 1 365 0 1764 173 0 22 chrX 2347175 2347493 -174626647 + AluJb SINE Alu 2 312 0 245 96 62 48 chrX 2347571 2347717 -174626423 + (TA)n Simple_repeat Simple_repeat 1 148 0 527 41 67 58 chrX 2347743 2348346 -174625794 + (TA)n Simple_repeat Simple_repeat 1 608 0 341 211 105 0 chrX 2348411 2348506 -174625634 - MLT2B1 LTR ERVL -415 105 1 1962 159 17 11 chrX 2348510 2348869 -174625271 - MLT1A1 LTR MaLR -1 364 4 1935 191 16 0 chrX 2348918 2349284 -174624856 - MLT1B LTR MaLR -18 372 1 1302 96 0 0 chrX 2349344 2349521 -174624619 - AluSg/x SINE Alu -2 308 132 2351 77 0 0 chrX 2349522 2349819 -174624321 - AluY SINE Alu -14 297 1 679 140 0 0 chrX 2349819 2349926 -174624214 - L1PB1 LINE L1 -117 6034 5928 323 224 19 28 chrX 2349929 2350036 -174624104 - Charlie5 DNA MER1_type -273 2339 2234 276 237 30 59 chrX 2350022 2350157 -174623983 - Charlie5 DNA MER1_type -2476 136 6 * 2053 139 0 0 chrX 2351049 2351359 -174622781 - AluJb SINE Alu -2 310 1 2536 42 3 0 chrX 2351406 2351716 -174622424 - AluY SINE Alu 0 311 1 1776 173 3 6 chrX 2351786 2352098 -174622042 - AluJo SINE Alu -1 311 1 485 131 12 0 chrX 2352099 2352183 -174621957 + CT-rich Low_complexity Low_complexity 1 85 0 1001 127 0 6 chrX 2352184 2352365 -174621775 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 1316 146 13 34 chrX 2352680 2352913 -174621227 - MER46A DNA MER2_type -7 229 2 781 191 0 0 chrX 2353016 2353157 -174620983 - FLAM_C SINE Alu 0 143 3 468 0 0 0 chrX 2353297 2353349 -174620791 + (CA)n Simple_repeat Simple_repeat 1 52 0 258 309 49 16 chrX 2353351 2353474 -174620666 - L1MC5 LINE L1 -69 7892 7766 326 143 0 100 chrX 2353567 2353637 -174620503 + AluJo SINE Alu 85 147 -155 * 804 222 125 0 chrX 2353636 2353812 -174620328 + MER58A DNA MER1_type 27 224 0 1642 235 5 3 chrX 2353865 2354257 -174619883 + L1MB3 LINE L1 5790 6182 -1 294 243 35 18 chrX 2354259 2354428 -174619712 + (TA)n Simple_repeat Simple_repeat 2 173 0 80 70 0 0 chrX 2354465 2354622 -174619518 + AT_rich Low_complexity Low_complexity 1 157 0 226 296 23 6 chrX 2354681 2354857 -174619283 + (TA)n Simple_repeat Simple_repeat 2 180 0 2068 120 7 3 chrX 2355635 2355943 -174618197 - AluSg SINE Alu -1 309 1 702 151 36 130 chrX 2355953 2356009 -174618131 - L1MB5 LINE L1 -1 6179 6119 1591 182 0 7 chrX 2356009 2356305 -174617835 - AluJo SINE Alu -18 294 1 702 151 36 130 chrX 2356305 2356440 -174617700 - L1MB5 LINE L1 -61 6119 6006 492 198 116 16 chrX 2356440 2356561 -174617579 - MLT1C LTR MaLR -327 140 8 1593 188 3 13 chrX 2357531 2357840 -174616300 - AluJo SINE Alu -6 306 1 1295 139 60 0 chrX 2358585 2358786 -174615354 - LTR36 LTR ERV1 0 611 399 2104 112 3 22 chrX 2358925 2359239 -174614901 - AluSx SINE Alu -4 308 1 180 0 0 0 chrX 2359311 2359331 -174614809 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1566 160 110 10 chrX 2359337 2359536 -174614604 - L1PA15 LINE L1 -21 6144 5946 414 179 193 50 chrX 2359536 2359676 -174614464 - L1MA4 LINE L1 -362 5938 5779 718 99 9 9 chrX 2360400 2360511 -174613629 + HY1 scRNA scRNA 1 111 -1 24 0 0 0 chrX 2360517 2360541 -174613599 + AT_rich Low_complexity Low_complexity 1 24 0 4244 122 18 0 chrX 2360696 2361320 -174612820 - MER41B LTR ERV1 0 635 1 256 239 15 15 chrX 2362283 2362350 -174611790 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 443 256 10 0 chrX 2362364 2362669 -174611471 + (CCCA)n Simple_repeat Simple_repeat 1 308 0 858 180 0 0 chrX 2362672 2362850 -174611290 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 220 195 26 39 chrX 2362894 2363048 -174611092 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 518 207 23 0 chrX 2363061 2363235 -174610905 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 22 35 0 0 chrX 2363696 2363725 -174610415 + AT_rich Low_complexity Low_complexity 1 29 0 2068 98 23 10 chrX 2363894 2364201 -174609939 + AluSx SINE Alu 1 311 -1 523 235 0 13 chrX 2364822 2364975 -174609165 + CT-rich Low_complexity Low_complexity 4 154 0 341 58 0 39 chrX 2364983 2365035 -174609105 + (TTTCC)n Simple_repeat Simple_repeat 1 50 0 419 143 16 0 chrX 2365038 2365101 -174609039 - AluSp/q SINE Alu -41 272 209 2056 94 0 4 chrX 2365103 2365378 -174608762 - AluSx SINE Alu -38 274 1 1823 164 0 10 chrX 2366065 2366369 -174607771 + AluJo SINE Alu 1 301 -11 300 314 0 0 chrX 2366544 2366630 -174607510 + Charlie1 DNA MER1_type 2350 2435 -326 660 256 32 97 chrX 2366694 2366952 -174607188 - Charlie1 DNA MER1_type 0 2761 2538 1591 149 13 49 chrX 2366952 2367260 -174606880 + AluJb SINE Alu 1 297 -15 660 256 32 97 chrX 2367260 2367412 -174606728 - Charlie1 DNA MER1_type -223 2538 2378 30 21 0 21 chrX 2367666 2367695 -174606445 + AT_rich Low_complexity Low_complexity 1 30 -17 2010 126 0 0 chrX 2367695 2367988 -174606152 - AluSx SINE Alu -19 293 1 30 21 0 21 chrX 2367988 2368006 -174606134 + AT_rich Low_complexity Low_complexity 30 47 0 1756 158 13 16 chrX 2368366 2368669 -174605471 - AluJo SINE Alu -2 310 9 1890 128 3 102 chrX 2368676 2369020 -174605120 - AluJo SINE Alu -2 310 1 1298 237 93 32 chrX 2370000 2370439 -174603701 - MLT1C LTR MaLR -1 466 1 806 236 146 37 chrX 2370449 2370771 -174603369 - MLT1C LTR MaLR -122 345 5 1933 137 137 34 chrX 2371058 2371373 -174602767 + MSTA LTR MaLR 1 365 -63 2519 66 0 3 chrX 2371373 2371678 -174602462 - AluY SINE Alu -7 304 1 1933 137 137 34 chrX 2371678 2371750 -174602390 + MSTA LTR MaLR 365 428 0 1082 185 15 10 chrX 2372098 2372298 -174601842 + AluJo SINE Alu 97 297 -15 222 352 0 0 chrX 2372316 2372387 -174601753 - L2 LINE L2 -1 3271 3201 1636 156 0 59 chrX 2372402 2372709 -174601431 + AluJb SINE Alu 5 293 -19 1922 132 4 0 chrX 2372925 2373197 -174600943 - AluSx SINE Alu -39 273 1 1259 164 19 0 chrX 2373199 2373412 -174600728 - AluJb SINE Alu -9 303 87 5877 138 12 38 chrX 2373416 2374192 -174599948 - L1MA5A LINE L1 0 6297 5503 1971 138 3 10 chrX 2374192 2374488 -174599652 + AluJb SINE Alu 1 294 -18 5877 138 12 38 chrX 2374488 2374544 -174599596 - L1MA5A LINE L1 -794 5503 5447 2349 76 0 7 chrX 2374544 2374834 -174599306 - AluSq SINE Alu -3 310 23 5877 138 12 38 chrX 2374834 2375054 -174599086 - L1MA5A LINE L1 -850 5447 5271 21 36 0 0 chrX 2376051 2376079 -174598061 + AT_rich Low_complexity Low_complexity 1 28 0 2201 116 0 0 chrX 2376085 2376379 -174597761 + AluY SINE Alu 1 294 -17 1769 170 3 26 chrX 2377029 2377340 -174596800 + AluJo SINE Alu 1 304 -8 703 180 0 50 chrX 2377737 2377876 -174596264 - FLAM_C SINE Alu -1 132 1 1515 173 3 21 chrX 2378380 2378663 -174595477 - AluJo SINE Alu -14 298 21 21 0 0 0 chrX 2378715 2378736 -174595404 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chrX 2378768 2378804 -174595336 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chrX 2379581 2379609 -174594531 + AT_rich Low_complexity Low_complexity 1 28 0 1816 153 0 19 chrX 2379793 2380100 -174594040 - AluSx SINE Alu -11 301 1 24 0 0 0 chrX 2380833 2380857 -174593283 + AT_rich Low_complexity Low_complexity 1 24 0 623 277 5 29 chrX 2381014 2381220 -174592920 - L1MB8 LINE L1 0 6178 5978 1547 110 239 146 chrX 2381220 2381529 -174592611 - Charlie3 DNA MER1_type 0 2712 2 1262 217 7 7 chrX 2381530 2381820 -174592320 - L1MB8 LINE L1 -190 5984 5695 439 255 19 9 chrX 2381689 2381855 -174592285 - L1PA13 LINE L1 -336 5825 5662 * 1257 226 100 25 chrX 2382172 2382571 -174591569 - MLT1C LTR MaLR -17 450 22 1080 212 91 39 chrX 2382599 2382929 -174591211 - MLT1C LTR MaLR -120 347 1 1892 149 38 54 chrX 2383326 2383494 -174590646 - L1MA8 LINE L1 0 6291 6122 793 160 0 0 chrX 2383494 2383619 -174590521 - FLAM_C SINE Alu -7 126 2 1892 149 38 54 chrX 2383619 2383874 -174590266 - L1MA8 LINE L1 -169 6122 5875 430 145 14 0 chrX 2383916 2383985 -174590155 + AluSg/x SINE Alu 211 280 -32 1115 197 136 15 chrX 2384002 2384266 -174589874 - Tigger3(Golem) DNA MER2_type -2733 296 1 1872 140 10 13 chrX 2384289 2384589 -174589551 - AluJo SINE Alu -9 303 5 415 218 15 30 chrX 2384653 2384786 -174589354 + (TA)n Simple_repeat Simple_repeat 1 131 0 520 216 0 22 chrX 2384791 2384972 -174589168 + (TATG)n Simple_repeat Simple_repeat 2 178 0 242 289 25 55 chrX 2385588 2385726 -174588414 + MIR3 SINE MIR 28 162 -46 318 96 22 0 chrX 2386365 2386422 -174587718 - L1M2 LINE L1 -505 5786 5724 2045 156 0 0 chrX 2386637 2386944 -174587196 + AluJb SINE Alu 1 307 -5 313 233 14 0 chrX 2386975 2387048 -174587092 - MIR SINE MIR -119 143 70 2981 160 35 28 chrX 2387062 2387444 -174586696 - L1MA4A LINE L1 -28 6275 5883 1992 115 44 10 chrX 2387444 2387740 -174586400 - AluSx SINE Alu -6 306 1 2981 160 35 28 chrX 2387740 2387932 -174586208 - L1MA4A LINE L1 -420 5883 5694 215 304 108 20 chrX 2387961 2388063 -174586077 + MER5B DNA MER1_type 6 116 -62 2180 119 0 31 chrX 2388072 2388391 -174585749 - AluSx SINE Alu -1 311 3 563 214 42 117 chrX 2388533 2388775 -174585365 - L1MC4a LINE L1 -1759 6049 5833 2437 87 7 0 chrX 2388775 2389085 -174585055 - AluSx SINE Alu 0 312 1 563 214 42 117 chrX 2389085 2389150 -174584990 - L1MC4a LINE L1 -1975 5833 5765 1646 175 11 11 chrX 2389165 2389451 -174584689 - AluJo SINE Alu -26 286 1 28 29 0 0 chrX 2390288 2390323 -174583817 + AT_rich Low_complexity Low_complexity 1 35 0 2306 91 3 7 chrX 2391459 2391757 -174582383 - AluSx SINE Alu -15 297 1 1693 195 7 3 chrX 2392200 2392492 -174581648 + AluJb SINE Alu 1 293 -19 2277 103 3 0 chrX 2392495 2392797 -174581343 + AluSq SINE Alu 1 303 -10 438 53 0 0 chrX 2393332 2393389 -174580751 + (TG)n Simple_repeat Simple_repeat 2 58 0 1951 157 3 3 chrX 2393774 2394080 -174580060 + AluJb SINE Alu 1 306 -6 753 165 31 0 chrX 2394150 2394277 -174579863 + FLAM_C SINE Alu 2 132 -1 675 148 0 9 chrX 2394590 2394698 -174579442 + U6 snRNA snRNA 1 107 0 2346 74 17 3 chrX 2395281 2395580 -174578560 + AluSx SINE Alu 1 303 -9 183 80 0 0 chrX 2396291 2396316 -174577824 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 432 0 0 0 chrX 2396895 2396943 -174577197 + (TG)n Simple_repeat Simple_repeat 2 49 0 707 255 51 19 chrX 2397648 2397749 -174576391 - MER58A DNA MER1_type -2197 223 127 1520 189 28 7 chrX 2397749 2398040 -174576100 + AluJo SINE Alu 6 302 -10 707 255 51 19 chrX 2398040 2398154 -174575986 - MER58A DNA MER1_type -2293 127 1 228 67 0 0 chrX 2398917 2398947 -174575193 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1603 158 0 26 chrX 2398948 2399220 -174574920 - AluJo SINE Alu -32 280 16 310 185 61 21 chrX 2399510 2399855 -174574285 + (TA)n Simple_repeat Simple_repeat 1 358 0 29 0 0 0 chrX 2399873 2399902 -174574238 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chrX 2400087 2400115 -174574025 + AT_rich Low_complexity Low_complexity 1 28 0 2867 131 42 17 chrX 2400117 2400380 -174573760 - L1MA5A LINE L1 -6 6291 6036 2331 111 0 0 chrX 2400380 2400677 -174573463 + AluSg SINE Alu 1 297 -13 2867 131 42 17 chrX 2400677 2400939 -174573201 - L1MA5A LINE L1 -261 6036 5753 1847 170 0 19 chrX 2400943 2401254 -174572886 - AluJb SINE Alu -5 307 3 300 182 299 26 chrX 2401347 2401501 -174572639 - L1MB2 LINE L1 -7 6164 5969 180 0 0 0 chrX 2402869 2402889 -174571251 + (T)n Simple_repeat Simple_repeat 1 20 0 657 197 100 120 chrX 2403231 2403530 -174570610 - MER101 LTR ERV1 0 474 182 315 241 0 27 chrX 2403545 2403657 -174570483 - MER101 LTR ERV1 -186 288 180 256 294 16 32 chrX 2403774 2403900 -174570240 - MER101 LTR ERV1 -186 288 165 1120 199 3 77 chrX 2403909 2404196 -174569944 - MER101 LTR ERV1 -198 276 11 2749 39 0 3 chrX 2404447 2404759 -174569381 - AluY SINE Alu 0 311 1 33 25 0 0 chrX 2404845 2404885 -174569255 + AT_rich Low_complexity Low_complexity 1 40 0 865 160 0 0 chrX 2405054 2405179 -174568961 + AluJo SINE Alu 90 214 -98 289 126 32 42 chrX 2405210 2405305 -174568835 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 1023 167 31 50 chrX 2405323 2405545 -174568595 - MER20 DNA MER1_type 0 219 2 495 307 100 28 chrX 2406228 2406707 -174567433 + L2 LINE L2 2729 3245 -68 378 258 44 107 chrX 2406770 2406933 -174567207 - L1MC4a LINE L1 -1958 5850 5713 2224 104 7 0 chrX 2406933 2407232 -174566908 + AluSq SINE Alu 1 301 -12 378 258 44 107 chrX 2407232 2407366 -174566774 - L1MC4a LINE L1 -2095 5713 5572 2177 115 0 0 chrX 2407367 2407653 -174566487 - AluJb SINE Alu -16 296 11 2154 137 83 21 chrX 2407664 2408051 -174566089 - L1MA7 LINE L1 -342 5949 5539 2533 70 0 0 chrX 2408178 2408477 -174565663 + AluSq SINE Alu 1 299 -14 2301 99 0 0 chrX 2408757 2409061 -174565079 - AluSq SINE Alu -9 304 1 4505 96 19 3 chrX 2409298 2409932 -174564208 + LTR9B LTR ERV1 1 644 0 198 0 0 0 chrX 2410050 2410072 -174564068 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1735 130 0 20 chrX 2410106 2410359 -174563781 + AluJo SINE Alu 4 251 -61 2121 89 36 30 chrX 2410359 2410656 -174563484 - LTR7 LTR ERV1 0 450 104 2583 58 0 6 chrX 2410656 2410969 -174563171 - AluY SINE Alu 0 311 1 2121 89 36 30 chrX 2410969 2411038 -174563102 - LTR7 LTR ERV1 -346 104 37 272 109 0 0 chrX 2411026 2411072 -174563068 + AluJo SINE Alu 257 302 0 * 452 183 113 35 chrX 2411087 2411202 -174562938 + MER63 DNA MER1_type 2 751 -85 2283 92 3 52 chrX 2411232 2411557 -174562583 - AluSq SINE Alu -4 309 1 2225 170 18 8 chrX 2412052 2412451 -174561689 + MER57A LTR ERV1 1 403 0 1654 149 51 14 chrX 2412659 2412934 -174561206 - AluJo SINE Alu -17 295 11 1991 131 24 0 chrX 2412953 2413243 -174560897 - AluSx SINE Alu -15 297 1 2423 81 7 0 chrX 2413308 2413606 -174560534 - AluY SINE Alu -11 300 1 2180 120 0 19 chrX 2413893 2414218 -174559922 - LTR8 LTR ERV1 -372 319 1 1914 140 3 29 chrX 2414942 2415250 -174558890 - AluJo SINE Alu -11 301 2 636 168 0 0 chrX 2415578 2415685 -174558455 - MER53 DNA DNA 0 189 83 933 194 6 0 chrX 2417126 2417286 -174556854 - Charlie3 DNA MER1_type -2546 164 4 539 157 0 0 chrX 2417671 2417760 -174556380 - MER4B LTR ERV1 -163 447 359 25 0 0 0 chrX 2417767 2417792 -174556348 + AT_rich Low_complexity Low_complexity 1 25 0 397 233 3 30 chrX 2417792 2418103 -174556037 + CT-rich Low_complexity Low_complexity 1 302 0 2056 131 10 0 chrX 2418648 2418946 -174555194 - AluJb SINE Alu -7 305 5 694 202 131 0 chrX 2419630 2419798 -174554342 - MER20 DNA MER1_type 0 219 30 2354 130 25 5 chrX 2420608 2420976 -174553164 - THE1C LTR MaLR 0 375 1 2066 158 0 0 chrX 2422171 2422542 -174551598 - AluSx SINE Alu 0 371 1 1750 197 16 35 chrX 2422674 2423044 -174551096 - MLT1A1 LTR MaLR -2 363 1 31 26 0 0 chrX 2423252 2423290 -174550850 + AT_rich Low_complexity Low_complexity 1 38 0 2333 102 0 0 chrX 2423457 2423752 -174550388 - AluSx SINE Alu -17 295 1 1790 164 0 32 chrX 2425329 2425639 -174548501 + AluJo SINE Alu 1 300 -12 1270 164 19 5 chrX 2426377 2426590 -174547550 + AluJb SINE Alu 73 288 -24 259 224 34 34 chrX 2426590 2426769 -174547371 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 30 0 0 chrX 2426775 2426808 -174547332 + AT_rich Low_complexity Low_complexity 1 33 0 253 230 13 0 chrX 2426808 2426960 -174547180 + (TA)n Simple_repeat Simple_repeat 1 154 0 417 100 86 14 chrX 2428039 2428109 -174546031 + MLT2B1 LTR ERVL 354 428 -92 767 180 33 27 chrX 2428109 2428259 -174545881 - AluJb SINE Alu -49 263 113 269 255 118 0 chrX 2428295 2428397 -174545743 + L2 LINE L2 3197 3310 -3 355 254 45 0 chrX 2428681 2428791 -174545349 - MLT1H1 LTR MaLR -12 543 429 * 438 288 8 0 chrX 2428781 2428906 -174545234 + MER20 DNA MER1_type 90 215 -4 656 125 19 10 chrX 2428995 2429099 -174545041 - U6 snRNA snRNA -2 105 1 232 320 0 48 chrX 2429187 2429312 -174544828 - MLT1H-int LTR MaLR -1616 119 1 393 287 65 51 chrX 2429315 2429532 -174544608 - MLT1H LTR MaLR -3 548 333 610 224 59 51 chrX 2429568 2429871 -174544269 + MLT1H1 LTR MaLR 243 547 -2 1495 166 121 10 chrX 2430167 2430480 -174543660 - MER7A DNA MER2_type 0 346 1 4426 121 11 2 chrX 2430517 2431145 -174542995 - MER41B LTR ERV1 0 635 2 1193 123 0 3 chrX 2431580 2431941 -174542199 + (TA)n Simple_repeat Simple_repeat 1 359 0 193 286 79 0 chrX 2432772 2432835 -174541305 - L2 LINE L2 0 3313 3246 395 143 30 48 chrX 2433299 2433467 -174540673 + (TAGA)n Simple_repeat Simple_repeat 2 166 0 454 171 22 39 chrX 2433517 2433698 -174540442 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1597 134 28 0 chrX 2433873 2434120 -174540020 + L1MA7 LINE L1 5682 5935 -356 688 261 28 6 chrX 2434140 2434320 -174539820 - MER20 DNA MER1_type -6 213 30 807 174 0 0 chrX 2434462 2434594 -174539546 + AluJb SINE Alu 1 132 -180 1741 166 28 3 chrX 2434601 2434885 -174539255 + AluJb SINE Alu 6 296 -16 4274 110 23 2 chrX 2435035 2435655 -174538485 + MER41B LTR ERV1 1 633 -2 1960 157 0 7 chrX 2436064 2436369 -174537771 - AluJo SINE Alu -9 303 1 1969 187 7 12 chrX 2436381 2436787 -174537353 - L1MA3 LINE L1 0 6305 5902 1816 137 41 47 chrX 2436811 2437026 -174537114 - L1PB3 LINE L1 0 6154 5940 1804 163 0 7 chrX 2437026 2437315 -174536825 - AluJb SINE Alu -21 291 5 1816 137 41 47 chrX 2437315 2437442 -174536698 - L1PB3 LINE L1 -214 5940 5814 753 240 73 5 chrX 2437448 2437652 -174536488 + MER20 DNA MER1_type 1 218 -1 913 111 0 0 chrX 2437658 2437775 -174536365 + AluSp SINE Alu 1 117 -196 267 31 0 0 chrX 2438034 2438066 -174536074 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2882 57 5 94 chrX 2438655 2438888 -174535252 - L1PA10 LINE L1 -294 5874 5696 1840 81 76 0 chrX 2438888 2439124 -174535016 - AluSq SINE Alu -59 254 1 2882 57 5 94 chrX 2439124 2439326 -174534814 - L1PA10 LINE L1 -472 5696 5478 1252 71 130 0 chrX 2439326 2439510 -174534630 + L1PA10 LINE L1 5959 6166 -2 1677 209 30 5 chrX 2439734 2440107 -174534033 + L1MB5 LINE L1 5792 6173 -1 2059 133 3 0 chrX 2440118 2440465 -174533675 + AluSx SINE Alu 1 312 0 1623 138 7 67 chrX 2440696 2440993 -174533147 + AluSx SINE Alu 5 283 -29 350 130 0 0 chrX 2441188 2441242 -174532898 - MADE1 DNA Mariner -1 79 26 218 226 0 16 chrX 2441264 2441326 -174532814 + (TA)n Simple_repeat Simple_repeat 2 62 0 34 0 0 0 chrX 2441327 2441361 -174532779 + AT_rich Low_complexity Low_complexity 1 34 0 320 140 20 0 chrX 2441459 2441509 -174532631 - MER20 DNA MER1_type -1 218 168 1025 227 31 14 chrX 2441527 2441781 -174532359 - MLT2D LTR ERVL -39 481 128 2724 88 58 21 chrX 2441794 2442226 -174531914 + LTR7 LTR ERV1 1 448 -2 4608 114 68 39 chrX 2442228 2443227 -174530913 + HERVH LTR ERV1 1 903 -6810 5328 14 2 0 chrX 2443254 2443848 -174530292 - L1PA2 LINE L1 -5 6150 5556 3454 12 5 0 chrX 2443849 2444409 -174529731 + L1PA2 LINE L1 4987 5550 -605 14831 90 11 8 chrX 2444409 2446492 -174527648 + HERVH LTR ERV1 899 2987 -4726 931 128 20 0 chrX 2446486 2446634 -174527506 + HERVH LTR ERV1 3140 3290 -4423 * 3472 111 0 6 chrX 2446624 2447129 -174527011 + HERVH LTR ERV1 3492 3993 -3720 4332 137 11 3 chrX 2447131 2447788 -174526352 + HERVH LTR ERV1 4488 5149 -2564 1420 110 23 14 chrX 2447789 2448007 -174526133 + HERVH LTR ERV1 5600 5819 -1894 * 2746 64 45 0 chrX 2448005 2448380 -174525760 + HERVH LTR ERV1 7322 7713 0 2626 99 58 21 chrX 2448380 2448812 -174525328 + LTR7 LTR ERV1 1 448 -2 321 213 8 134 chrX 2448815 2448942 -174525198 - MLT2D LTR ERVL -302 112 2 236 88 0 0 chrX 2448943 2448977 -174525163 - MLT2B2 LTR ERVL -481 34 1 228 136 0 23 chrX 2448977 2449011 -174525129 - MLT2C2 LTR ERVL -431 33 1 996 187 31 58 chrX 2449065 2449290 -174524850 + MER20 DNA MER1_type 1 219 0 24 77 0 0 chrX 2449383 2449435 -174524705 + AT_rich Low_complexity Low_complexity 1 52 0 705 161 15 8 chrX 2449517 2449647 -174524493 - MLT1A1 LTR MaLR -234 131 1 328 229 0 0 chrX 2449694 2449764 -174524376 + MER69 DNA AcHobo 2456 2525 -1 26 0 0 0 chrX 2449972 2449998 -174524142 + AT_rich Low_complexity Low_complexity 1 26 0 367 118 0 0 chrX 2450006 2450057 -174524083 - AluSx SINE Alu -7 295 245 23 0 0 0 chrX 2450057 2450080 -174524060 + AT_rich Low_complexity Low_complexity 1 23 0 1653 197 3 3 chrX 2450086 2450381 -174523759 - AluJo SINE Alu -17 295 1 430 197 0 0 chrX 2450821 2450892 -174523248 - MER81 DNA DNA -21 93 23 2657 165 0 52 chrX 2450974 2451080 -174523060 - MER66A LTR ERV1 0 478 368 1893 99 4 0 chrX 2451080 2451322 -174522818 - AluSx SINE Alu -59 253 11 2657 165 0 52 chrX 2451322 2451719 -174522421 - MER66A LTR ERV1 -110 368 1 683 214 35 23 chrX 2452042 2452215 -174521925 - MER20 DNA MER1_type -26 193 19 258 32 0 0 chrX 2452572 2452603 -174521537 + (GA)n Simple_repeat Simple_repeat 1 31 0 2214 102 7 0 chrX 2453683 2453976 -174520164 - AluSx SINE Alu -17 295 1 907 131 0 65 chrX 2454143 2454296 -174519844 - FLAM_C SINE Alu 0 143 1 913 112 176 70 chrX 2454676 2454863 -174519277 + AluJo SINE Alu 85 291 -21 1008 112 0 17 chrX 2454952 2455131 -174519009 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 180 111 0 0 chrX 2456064 2456091 -174518049 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 1793 167 0 17 chrX 2456549 2456843 -174517297 - AluJo SINE Alu -11 301 13 2080 134 0 10 chrX 2456857 2457170 -174516970 - AluJb SINE Alu -2 310 1 915 172 7 0 chrX 2457174 2457325 -174516815 - MLT1A1 LTR MaLR -213 152 1 1741 157 0 38 chrX 2457942 2458102 -174516038 - AluJo SINE Alu -24 288 123 225 0 0 0 chrX 2458102 2458127 -174516013 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 243 0 0 0 chrX 2458126 2458153 -174515987 + (GA)n Simple_repeat Simple_repeat 2 28 0 1741 157 0 38 chrX 2458127 2458153 -174515987 - AluJo SINE Alu -189 123 98 2252 90 0 0 chrX 2458153 2458430 -174515710 - AluY SINE Alu -34 277 1 1741 157 0 38 chrX 2458430 2458555 -174515585 - AluJo SINE Alu -214 98 13 2778 83 14 3 chrX 2459295 2459655 -174514485 + THE1B LTR MaLR 1 364 0 260 269 215 0 chrX 2659944 2660074 -174314066 + MLT2B1 LTR ERVL 5 162 -358 456 222 0 0 chrX 2660084 2660174 -174313966 - L1M2 LINE L1 -724 5588 5499 183 129 0 0 chrX 2660232 2660263 -174313877 + (TG)n Simple_repeat Simple_repeat 2 32 0 231 152 0 0 chrX 2660326 2660372 -174313768 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1777 175 0 20 chrX 2660373 2660670 -174313470 - AluJo SINE Alu -21 291 1 408 190 131 73 chrX 2660677 2660803 -174313337 - MLT1D LTR MaLR -329 176 43 2015 148 38 40 chrX 2660803 2661295 -174312845 + LTR1B LTR ERV1 1 525 -301 992 338 113 21 chrX 2661406 2662087 -174312053 + L2 LINE L2 855 1598 -1716 1128 167 57 33 chrX 2662179 2662245 -174311895 + MLT1A1 LTR MaLR 1 64 -301 2114 158 25 0 chrX 2662245 2662599 -174311541 - THE1B LTR MaLR 0 364 2 1128 167 57 33 chrX 2662599 2662777 -174311363 + MLT1A1 LTR MaLR 64 251 -114 288 146 0 73 chrX 2662881 2663004 -174311136 + (TATATG)n Simple_repeat Simple_repeat 5 118 0 301 184 0 126 chrX 2663010 2663113 -174311027 - L1MC4 LINE L1 -1339 6703 6614 * 317 270 11 11 chrX 2663025 2663114 -174311026 + L1MC4 LINE L1 6614 6702 -1340 1524 200 21 14 chrX 2663146 2663514 -174310626 - MER47B DNA MER2_type 0 418 1 312 200 13 27 chrX 2663542 2663648 -174310492 + (TA)n Simple_repeat Simple_repeat 1 106 -42 1832 127 66 33 chrX 2663648 2664011 -174310129 + THE1C LTR MaLR 1 375 0 312 200 13 27 chrX 2664011 2664054 -174310086 + (TA)n Simple_repeat Simple_repeat 106 148 0 1519 183 23 17 chrX 2664103 2664404 -174309736 - AluJb SINE Alu -9 303 1 333 254 15 15 chrX 2664432 2664566 -174309574 + (TA)n Simple_repeat Simple_repeat 2 135 0 614 322 152 39 chrX 2664827 2665340 -174308800 + L2 LINE L2 1720 2290 -1024 2404 142 22 52 chrX 2665349 2665793 -174308347 + Tigger2a DNA MER2_type 1 431 -3 301 265 147 5 chrX 2665869 2666080 -174308060 - L1M4 LINE L1 -3194 2952 2712 1896 138 3 22 chrX 2666084 2666433 -174307707 - MER4A LTR ERV1 -3 661 261 572 134 21 10 chrX 2666433 2666530 -174307610 - MER4A LTR ERV1 -566 98 1 311 265 56 47 chrX 2666530 2666745 -174307395 - L1M4 LINE L1 -3432 2714 2498 341 123 18 0 chrX 2667747 2667804 -174306336 + Tigger3(Golem) DNA MER2_type 2916 2973 -56 364 138 0 0 chrX 2667921 2667979 -174306161 + Tigger3(Golem) DNA MER2_type 2917 2974 -55 24 0 0 0 chrX 2668003 2668027 -174306113 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 2668538 2668560 -174305580 + AT_rich Low_complexity Low_complexity 1 22 0 2057 113 23 13 chrX 2668747 2669056 -174305084 + AluSq SINE Alu 1 312 -1 223 170 55 24 chrX 2670029 2670197 -174303943 + (TAGA)n Simple_repeat Simple_repeat 1 173 0 248 217 63 21 chrX 2670249 2670392 -174303748 + (TAGA)n Simple_repeat Simple_repeat 4 152 0 301 194 51 40 chrX 2670427 2670602 -174303538 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 369 202 0 0 chrX 2670814 2670888 -174303252 - MLT1D LTR MaLR -327 178 111 508 277 31 6 chrX 2670982 2671141 -174302999 - MIR SINE MIR 0 262 100 739 218 7 0 chrX 2671931 2672165 -174301975 - AluJb SINE Alu 0 374 140 2206 129 0 0 chrX 2672170 2672472 -174301668 - AluSx SINE Alu -9 303 2 2376 107 0 0 chrX 2672478 2672787 -174301353 - AluSq SINE Alu -4 309 1 1844 159 10 0 chrX 2673286 2673576 -174300564 - AluJo SINE Alu -19 293 1 1923 164 31 82 chrX 2673730 2674181 -174299959 - MSTC LTR MaLR 0 428 1 1510 175 133 6 chrX 2674329 2674660 -174299480 + MSTA LTR MaLR 1 373 -55 262 312 168 70 chrX 2674788 2675406 -174298734 - L2 LINE L2 -2634 680 2 979 261 17 17 chrX 2676564 2676909 -174297231 + L1MA9 LINE L1 5943 6287 -25 183 222 0 0 chrX 2676931 2676976 -174297164 + (TA)n Simple_repeat Simple_repeat 1 45 0 2389 83 0 3 chrX 2677957 2678257 -174295883 - AluSq SINE Alu -14 299 1 1657 161 7 4 chrX 2679078 2679358 -174294782 - AluJo SINE Alu -10 302 22 488 181 14 21 chrX 2679492 2679636 -174294504 + CT-rich Low_complexity Low_complexity 3 145 0 1499 215 13 0 chrX 2679839 2680353 -174293787 - AluJb SINE Alu 0 518 1 185 50 0 75 chrX 2680353 2680365 -174293775 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chrX 2680661 2680683 -174293457 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 2680961 2680985 -174293155 + AT_rich Low_complexity Low_complexity 1 24 0 1073 262 115 49 chrX 2681709 2682136 -174292004 - LTR40a LTR ERVL 0 519 65 1847 168 0 7 chrX 2682183 2682505 -174291635 - AluJb SINE Alu 0 312 1 194 255 108 39 chrX 2683238 2683340 -174290800 + MIR SINE MIR 54 162 -100 673 216 211 15 chrX 2683360 2683559 -174290581 + MLT1A1 LTR MaLR 1 238 -127 1078 115 0 0 chrX 2683666 2683822 -174290318 + AluSp/q SINE Alu 156 311 -2 349 186 70 39 chrX 2683844 2684000 -174290140 + Charlie1 DNA MER1_type 2572 2732 -29 326 153 36 29 chrX 2684022 2684159 -174289981 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 2318 88 3 0 chrX 2684228 2684525 -174289615 - AluSx SINE Alu -14 298 1 411 284 100 50 chrX 2684558 2684797 -174289343 + MIR SINE MIR 5 255 -7 654 204 6 16 chrX 2685069 2685583 -174288557 + GA-rich Low_complexity Low_complexity 1 508 0 212 240 42 21 chrX 2686866 2686962 -174287178 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 28 0 0 0 chrX 2687351 2687379 -174286761 + AT_rich Low_complexity Low_complexity 1 28 0 596 124 21 10 chrX 2687866 2687963 -174286177 + MER4A LTR ERV1 1 98 -566 1524 164 184 40 chrX 2687963 2688316 -174285824 + MER4A LTR ERV1 261 664 0 203 171 0 0 chrX 2688324 2688365 -174285775 + GA-rich Low_complexity Low_complexity 1 41 0 791 154 0 28 chrX 2689262 2689405 -174284735 - LTR7 LTR ERV1 -311 139 1 22 0 0 0 chrX 2689435 2689457 -174284683 + AT_rich Low_complexity Low_complexity 1 22 0 2308 114 29 24 chrX 2689530 2689908 -174284232 + Tigger2a DNA MER2_type 1 380 -54 2779 197 12 25 chrX 2689910 2690473 -174283667 + L1PA16 LINE L1 5607 6162 -4 2340 118 25 6 chrX 2690996 2691353 -174282787 + THE1B LTR MaLR 1 364 0 1159 241 25 97 chrX 2691436 2691991 -174282149 - L1ME3A LINE L1 -5 6165 5651 808 117 7 36 chrX 2692671 2692808 -174281332 + THE1C LTR MaLR 1 133 -242 910 213 28 21 chrX 2692918 2693156 -174280984 + LTR1B LTR ERV1 545 826 0 185 350 8 51 chrX 2693273 2693390 -174280750 + L2 LINE L2 2940 3051 -221 916 190 27 36 chrX 2694429 2694650 -174279490 + MER20 DNA MER1_type 1 219 0 180 0 0 0 chrX 2694663 2694683 -174279457 + (T)n Simple_repeat Simple_repeat 1 20 0 3445 172 120 33 chrX 2695225 2695985 -174278155 + LTR1B LTR ERV1 1 826 0 231 145 66 0 chrX 2696541 2696617 -174277523 + (TATAG)n Simple_repeat Simple_repeat 5 85 0 253 161 18 18 chrX 2696809 2696865 -174277275 + L1MA5A LINE L1 6034 6089 -208 1448 191 70 29 chrX 2696866 2697521 -174276619 + LTR8A LTR ERV1 1 724 -3 1107 96 71 0 chrX 2697521 2697719 -174276421 + L1MA5A LINE L1 6084 6295 -2 228 361 56 21 chrX 2697848 2697992 -174276148 - L2 LINE L2 -189 3083 2935 282 206 22 65 chrX 2698822 2699006 -174275134 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 * 295 178 74 22 chrX 2698969 2699104 -174275036 + (TA)n Simple_repeat Simple_repeat 1 142 0 304 239 60 12 chrX 2699204 2699371 -174274769 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 405 175 33 55 chrX 2699354 2699537 -174274603 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 323 86 63 46 chrX 2699610 2699784 -174274356 + (TA)n Simple_repeat Simple_repeat 2 178 0 234 326 167 60 chrX 2700875 2701391 -174272749 + L2 LINE L2 1268 1838 -1476 204 184 31 0 chrX 2702646 2702744 -174271396 + (TA)n Simple_repeat Simple_repeat 1 101 0 324 0 0 0 chrX 2702794 2702830 -174271310 + (CA)n Simple_repeat Simple_repeat 2 37 0 651 173 48 7 chrX 2702831 2702948 -174271192 + (TCTA)n Simple_repeat Simple_repeat 1 112 -496 2235 131 0 0 chrX 2702948 2703260 -174270880 - AluSx SINE Alu 0 312 1 651 173 48 7 chrX 2703260 2703416 -174270724 + (TCTA)n Simple_repeat Simple_repeat 112 608 0 581 73 85 18 chrX 2703471 2703635 -174270505 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 729 102 40 23 chrX 2703655 2703832 -174270308 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 200 125 25 25 chrX 2703899 2703939 -174270201 + CT-rich Low_complexity Low_complexity 2 41 0 26 0 0 0 chrX 2705600 2705626 -174268514 + AT_rich Low_complexity Low_complexity 1 26 0 521 206 16 24 chrX 2706506 2706723 -174267417 + CT-rich Low_complexity Low_complexity 1 218 -314 1521 197 7 10 chrX 2706723 2707013 -174267127 - AluJb SINE Alu -23 289 1 521 206 16 24 chrX 2707013 2707043 -174267097 + CT-rich Low_complexity Low_complexity 218 532 0 790 75 47 31 chrX 2707768 2708024 -174266116 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 21 57 0 0 chrX 2708531 2708566 -174265574 + AT_rich Low_complexity Low_complexity 1 35 0 3064 147 49 9 chrX 2708682 2709255 -174264885 - L1MA4 LINE L1 -5 6295 5700 884 140 6 13 chrX 2709457 2709614 -174264526 - L1MA4 LINE L1 -593 5710 5555 2126 140 19 22 chrX 2709621 2709986 -174264154 - THE1B LTR MaLR 0 364 1 2164 145 0 0 chrX 2710383 2710680 -174263460 + AluSx SINE Alu 1 297 -15 1979 143 0 16 chrX 2711263 2711571 -174262569 - AluSx SINE Alu -9 303 1 2349 107 0 0 chrX 2712193 2712501 -174261639 - AluSx SINE Alu -4 308 1 330 45 0 0 chrX 2713757 2713801 -174260339 + U5 snRNA snRNA 1 44 -72 501 66 0 13 chrX 2714050 2714126 -174260014 + L1PB3 LINE L1 6073 6147 -7 1291 191 46 8 chrX 2714687 2714928 -174259212 - AluJo SINE Alu -61 251 2 185 105 0 26 chrX 2715039 2715077 -174259063 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 334 167 69 35 chrX 2715099 2715243 -174258897 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 21 0 0 0 chrX 2715897 2715918 -174258222 + AT_rich Low_complexity Low_complexity 1 21 0 462 291 172 28 chrX 2715962 2716399 -174257741 + L1ME3 LINE L1 3901 4400 -1746 311 252 16 8 chrX 2716424 2716547 -174257593 + L1ME3 LINE L1 4534 4657 -1489 30 0 0 0 chrX 2716798 2716828 -174257312 + AT_rich Low_complexity Low_complexity 1 30 0 2132 136 0 0 chrX 2716955 2717256 -174256884 + AluSx SINE Alu 1 304 -8 324 0 0 0 chrX 2717256 2717292 -174256848 + (TA)n Simple_repeat Simple_repeat 2 37 0 369 287 27 18 chrX 2718086 2718309 -174255831 + L1ME3 LINE L1 5725 5949 -213 3103 232 33 33 chrX 2718450 2719414 -174254726 + MER45B DNA AcHobo 1 964 -76 1133 214 0 0 chrX 2719420 2719626 -174254514 - MER58A DNA MER1_type -6 218 13 337 166 63 46 chrX 2722971 2723146 -174250994 + (TA)n Simple_repeat Simple_repeat 2 179 0 247 107 67 0 chrX 2723162 2723237 -174250903 + (TA)n Simple_repeat Simple_repeat 2 81 0 545 225 12 0 chrX 2723276 2723436 -174250704 + (CATA)n Simple_repeat Simple_repeat 1 162 0 2376 223 25 14 chrX 2723895 2724460 -174249680 - MER7C DNA MER2_type 0 602 32 269 179 30 30 chrX 2724525 2724592 -174249548 - MLT1C LTR MaLR 0 467 401 1164 149 0 0 chrX 2724595 2724763 -174249377 + AluSg/x SINE Alu 137 304 -8 539 275 25 35 chrX 2724783 2724983 -174249157 - MLT1C LTR MaLR -176 291 94 1103 247 32 23 chrX 2725380 2725733 -174248407 - MER87 LTR ERV1 -9 547 174 552 125 0 0 chrX 2725759 2725839 -174248301 + AluS SINE Alu 1 80 -233 338 106 0 0 chrX 2725840 2725887 -174248253 - Alu SINE Alu -254 47 1 1821 176 0 3 chrX 2725887 2726183 -174247957 - AluJo SINE Alu -12 300 6 699 210 7 0 chrX 2726192 2726335 -174247805 - L1PB4 LINE L1 -3 6153 6010 2314 124 65 10 chrX 2726359 2726762 -174247378 - MSTA LTR MaLR 0 428 4 2198 113 0 7 chrX 2728309 2728610 -174245530 + AluSx SINE Alu 1 299 -13 1777 171 7 0 chrX 2728754 2729052 -174245088 + AluJb SINE Alu 1 300 -12 631 254 86 62 chrX 2729259 2729644 -174244496 + L1ME3A LINE L1 5714 6107 -63 2303 92 0 7 chrX 2730190 2730484 -174243656 + AluSx SINE Alu 1 292 -20 228 35 0 0 chrX 2730544 2730573 -174243567 + (CA)n Simple_repeat Simple_repeat 1 29 0 2370 75 3 3 chrX 2730933 2731228 -174242912 + AluSp SINE Alu 1 295 -18 255 355 70 25 chrX 2734097 2734297 -174239843 + L2 LINE L2 223 431 -2883 3804 141 25 45 chrX 2735977 2736760 -174237380 + L1PB4 LINE L1 5386 6153 -3 2218 102 3 0 chrX 2736845 2737156 -174236984 - AluSp SINE Alu 0 312 1 242 29 29 0 chrX 2737569 2737604 -174236536 + (TG)n Simple_repeat Simple_repeat 1 36 0 3885 229 20 28 chrX 2737608 2738414 -174235726 - L1MC3 LINE L1 -935 6850 6040 1571 177 35 41 chrX 2738414 2738759 -174235381 - MER2 DNA MER2_type 0 344 2 3885 229 20 28 chrX 2738759 2739003 -174235137 - L1MC3 LINE L1 -1745 6040 5806 1006 231 104 24 chrX 2739003 2739174 -174234966 - MLT1A1 LTR MaLR 0 365 209 180 0 0 0 chrX 2739174 2739194 -174234946 + (GA)n Simple_repeat Simple_repeat 2 21 0 1006 231 104 24 chrX 2739194 2739360 -174234780 - MLT1A1 LTR MaLR -156 209 1 3885 229 20 28 chrX 2739360 2739397 -174234743 - L1MC3 LINE L1 -1979 5806 5770 1118 199 4 17 chrX 2739861 2740097 -174234043 - MLT1D LTR MaLR -3 502 270 207 0 0 0 chrX 2740149 2740172 -174233968 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1159 228 28 53 chrX 2740179 2740464 -174233676 - AluJo SINE Alu -34 278 1 681 262 26 47 chrX 2740469 2740721 -174233419 - MLT1D LTR MaLR -295 210 18 557 214 38 13 chrX 2740780 2740939 -174233201 + L1MA9 LINE L1 6112 6274 -38 1192 225 8 19 chrX 2740953 2741215 -174232925 + AluJo SINE Alu 47 305 -7 256 339 85 28 chrX 2743163 2743340 -174230800 + MER5A DNA MER1_type 1 187 -2 186 43 0 0 chrX 2743415 2743438 -174230702 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1351 218 39 105 chrX 2744119 2744632 -174229508 - LTR8 LTR ERV1 0 691 213 602 152 0 9 chrX 2744708 2744813 -174229327 + LTR24B LTR ERV1 1 104 -472 339 226 19 19 chrX 2744858 2744964 -174229176 + L1MA10 LINE L1 6228 6333 -1 2735 180 21 16 chrX 2745017 2745583 -174228557 - LTR24B LTR ERV1 -7 569 1 2079 191 5 2 chrX 2745583 2745988 -174228152 + LTR49 LTR ERV1 30 435 -160 232 130 148 19 chrX 2745974 2746028 -174228112 + LTR48 LTR ERV1 607 667 -120 * 2654 184 39 66 chrX 2746065 2746195 -174227945 + LTR8A LTR ERV1 34 166 -561 1832 163 3 7 chrX 2746195 2746495 -174227645 - AluJb SINE Alu -9 303 5 2654 184 39 66 chrX 2746495 2747077 -174227063 + LTR8A LTR ERV1 166 727 0 462 125 12 12 chrX 2747086 2747166 -174226974 + LTR49 LTR ERV1 516 595 0 1208 210 64 42 chrX 2747244 2747432 -174226708 + MLT1A2 LTR MaLR 1 202 -172 4600 119 16 13 chrX 2747432 2748121 -174226019 + LTR8 LTR ERV1 1 691 0 1208 210 64 42 chrX 2748121 2748289 -174225851 + MLT1A2 LTR MaLR 202 365 -9 941 246 81 44 chrX 2748411 2748974 -174225166 - LTR24B LTR ERV1 -7 569 1 243 152 0 0 chrX 2749081 2749127 -174225013 + (TG)n Simple_repeat Simple_repeat 1 46 0 2000 153 44 8 chrX 2749228 2749683 -174224457 - MER61E LTR ERV1 -40 461 1 1573 185 92 3 chrX 2749886 2750221 -174223919 - MLT1A1 LTR MaLR 0 365 1 1566 206 0 3 chrX 2750704 2750986 -174223154 - AluJb SINE Alu -31 281 1 1921 134 7 7 chrX 2752403 2752693 -174221447 + AluSx SINE Alu 1 290 -22 433 236 236 78 chrX 2752726 2753261 -174220879 - MER92B LTR ERV1 -8 628 10 361 21 0 0 chrX 2753429 2753476 -174220664 - MER41B LTR ERV1 -108 527 481 2947 150 35 4 chrX 2753640 2754159 -174219981 + LTR39 LTR ERV1 1 535 -248 3615 104 11 11 chrX 2754159 2754718 -174219422 - PABL_A LTR ERV1 0 660 102 1248 134 49 45 chrX 2754826 2755072 -174219068 + THE1B LTR MaLR 118 364 0 299 313 77 15 chrX 2755148 2755343 -174218797 - ERVL LTR ERVL -1545 4219 4013 222 214 0 0 chrX 2756725 2756767 -174217373 + GA-rich Low_complexity Low_complexity 2 43 0 2226 104 14 0 chrX 2756875 2757164 -174216976 + AluSx SINE Alu 1 293 -19 201 143 0 0 chrX 2757413 2757448 -174216692 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 796 176 6 6 chrX 2757448 2757624 -174216516 + GA-rich Low_complexity Low_complexity 3 178 0 770 167 21 0 chrX 2757635 2757872 -174216268 + GA-rich Low_complexity Low_complexity 1 242 0 1376 91 11 0 chrX 2759307 2759483 -174214657 + AluSx SINE Alu 2 179 -133 959 62 78 0 chrX 2759563 2759692 -174214448 + MER85 DNA T2_type 1 139 0 23 0 0 0 chrX 2759922 2759945 -174214195 + AT_rich Low_complexity Low_complexity 1 23 0 263 312 59 72 chrX 2760751 2761112 -174213028 - L2 LINE L2 0 3313 2946 2113 141 0 0 chrX 2761264 2761562 -174212578 - AluSx SINE Alu -14 298 1 29 78 0 0 chrX 2762393 2762457 -174211683 + AT_rich Low_complexity Low_complexity 1 64 0 318 132 0 0 chrX 2762781 2762834 -174211306 + (TG)n Simple_repeat Simple_repeat 2 54 0 2474 53 0 38 chrX 2763009 2763327 -174210813 + AluY SINE Alu 1 306 -5 970 126 6 55 chrX 2763870 2763894 -174210246 - L1MA2 LINE L1 -5 6299 6275 2561 105 6 3 chrX 2763894 2764255 -174209885 + THE1B LTR MaLR 3 364 0 970 126 6 55 chrX 2764255 2764412 -174209728 - L1MA2 LINE L1 -29 6275 6127 397 293 37 111 chrX 2764484 2764754 -174209386 + L2 LINE L2 969 1218 -2096 2239 149 3 0 chrX 2764819 2765187 -174208953 - L1PB4 LINE L1 -6 6150 5782 1026 92 17 11 chrX 2765202 2765376 -174208764 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2000 143 0 4 chrX 2765376 2765656 -174208484 - AluSx SINE Alu -33 279 1 664 208 0 34 chrX 2765656 2765805 -174208335 - FRAM SINE Alu -21 155 12 237 65 0 0 chrX 2765827 2765858 -174208282 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6399 197 10 26 chrX 2765861 2766550 -174207590 - L1PA15 LINE L1 -5 6160 5462 2338 70 0 17 chrX 2766550 2766850 -174207290 - AluY SINE Alu -16 295 1 6399 197 10 26 chrX 2766850 2767021 -174207119 - L1PA15 LINE L1 -703 5462 5290 1892 137 3 36 chrX 2767021 2767348 -174206792 - AluSx SINE Alu 0 312 1 6399 197 10 26 chrX 2767348 2768810 -174205330 - L1PA15 LINE L1 -875 5290 3882 2154 84 7 10 chrX 2768950 2769246 -174204894 - AluY SINE Alu -14 297 3 1915 157 0 25 chrX 2769360 2769679 -174204461 + AluJo SINE Alu 1 311 -1 429 310 74 77 chrX 2769838 2770202 -174203938 + L2 LINE L2 1970 2332 -982 1607 178 20 26 chrX 2770664 2771046 -174203094 + L1MB3 LINE L1 5659 5998 -185 404 181 29 3 chrX 2771017 2771111 -174203029 + L1MB3 LINE L1 6060 6143 -28 * 1509 205 0 35 chrX 2771114 2771402 -174202738 + AluJo SINE Alu 7 284 -28 23 33 0 0 chrX 2771449 2771479 -174202661 + AT_rich Low_complexity Low_complexity 1 30 0 413 370 31 43 chrX 2771535 2771884 -174202256 + L2 LINE L2 2570 2914 -400 2085 129 24 12 chrX 2772001 2772342 -174201798 + MLT1A1 LTR MaLR 1 345 -20 1973 120 3 17 chrX 2772404 2772704 -174201436 - AluSg SINE Alu -14 296 1 1630 164 58 0 chrX 2774164 2774438 -174199702 + AluJb SINE Alu 1 290 -22 1278 173 0 18 chrX 2775538 2775764 -174198376 + AluJo SINE Alu 83 304 -8 2260 118 0 0 chrX 2775803 2776100 -174198040 + AluSx SINE Alu 1 297 -15 327 200 0 15 chrX 2776168 2776233 -174197907 - MLT1E2 LTR MaLR -5 621 558 973 156 0 0 chrX 2776233 2776374 -174197766 + FRAM SINE Alu 20 160 -16 324 186 0 14 chrX 2776381 2776451 -174197689 - MLT1B LTR MaLR -67 438 370 2486 180 39 34 chrX 2776451 2776608 -174197532 - L1MB3 LINE L1 -56 6127 5972 4969 76 8 13 chrX 2776608 2777279 -174196861 + PABL_B LTR ERV1 1 667 0 2486 180 39 34 chrX 2777279 2777368 -174196772 - L1MB3 LINE L1 -211 5972 5885 2102 177 18 0 chrX 2777368 2777764 -174196376 + MER57A LTR ERV1 1 403 0 2486 180 39 34 chrX 2777764 2778082 -174196058 - L1MB3 LINE L1 -298 5885 5559 2050 98 0 4 chrX 2778183 2778449 -174195691 - AluSq SINE Alu -48 265 1 1631 184 0 27 chrX 2778466 2778760 -174195380 - AluJb SINE Alu -24 288 3 939 193 6 0 chrX 2778762 2778938 -174195202 - MLT1B LTR MaLR -213 177 1 1167 136 5 35 chrX 2779693 2779916 -174194224 - AluJo SINE Alu 0 306 90 1828 179 0 0 chrX 2780079 2780403 -174193737 + L1MA9 LINE L1 5464 5787 -525 606 123 29 29 chrX 2780413 2780584 -174193556 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 634 130 11 43 chrX 2780627 2780811 -174193329 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1266 228 72 70 chrX 2780812 2781282 -174192858 + L1MA9 LINE L1 5804 6274 -38 21 0 0 0 chrX 2781283 2781304 -174192836 + AT_rich Low_complexity Low_complexity 1 21 0 776 156 0 15 chrX 2781559 2781694 -174192446 + FLAM_C SINE Alu 1 133 -10 1590 160 0 70 chrX 2782716 2783016 -174191124 + AluJo SINE Alu 1 279 -33 357 24 0 0 chrX 2784341 2784383 -174189757 + (TA)n Simple_repeat Simple_repeat 1 42 0 780 130 22 29 chrX 2784493 2784631 -174189509 - AluJo SINE Alu -175 137 1 280 85 21 0 chrX 2785582 2785629 -174188511 - MADE1 DNA Mariner 0 80 33 207 100 0 0 chrX 2785889 2785919 -174188221 + (A)n Simple_repeat Simple_repeat 1 30 0 286 179 0 0 chrX 2786698 2786754 -174187386 + L1MA9 LINE L1 5943 5998 -191 1160 194 48 39 chrX 2786828 2786988 -174187152 + L1MA9 LINE L1 5995 6152 -160 459 0 0 0 chrX 2786988 2787039 -174187101 + (CA)n Simple_repeat Simple_repeat 1 51 0 1160 194 48 39 chrX 2787039 2787059 -174187081 + L1MA9 LINE L1 6152 6170 -142 2473 169 50 67 chrX 2787059 2787682 -174186458 - LTR9 LTR ERV1 0 612 1 1160 194 48 39 chrX 2787682 2787810 -174186330 + L1MA9 LINE L1 6170 6307 -5 23 0 0 0 chrX 2788357 2788380 -174185760 + AT_rich Low_complexity Low_complexity 1 23 0 723 118 31 16 chrX 2788490 2788727 -174185413 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 868 139 10 19 chrX 2788765 2789082 -174185058 + (TCTA)n Simple_repeat Simple_repeat 1 313 0 467 182 7 26 chrX 2789105 2789259 -174184881 + (TCTA)n Simple_repeat Simple_repeat 3 153 0 323 179 8 12 chrX 2789267 2789390 -174184750 - Tigger2 DNA MER2_type 0 2718 2554 * 772 208 19 51 chrX 2789389 2789605 -174184535 - Tigger2 DNA MER2_type -2508 210 2 696 285 112 19 chrX 2790154 2790421 -174183719 - MLT1E LTR MaLR -11 582 291 731 136 32 16 chrX 2790917 2791042 -174183098 + FLAM_A SINE Alu 16 142 0 334 267 159 11 chrX 2791112 2791288 -174182852 + L1ME3A LINE L1 5311 5512 -650 1814 179 0 0 chrX 2791321 2791633 -174182507 + AluJo SINE Alu 1 312 0 470 308 77 15 chrX 2791638 2791911 -174182229 + L1ME3A LINE L1 5594 5883 -287 2539 59 3 0 chrX 2791918 2792223 -174181917 + AluY SINE Alu 1 306 -5 236 264 33 41 chrX 2792267 2792388 -174181752 + L1ME3A LINE L1 6046 6165 -5 2272 88 3 7 chrX 2792826 2793131 -174181009 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 2795133 2795529 -174178611 - L1PA16 LINE L1 -45 6121 5688 2377 90 10 0 chrX 2795529 2795830 -174178310 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 2795830 2795876 -174178264 - L1PA16 LINE L1 -478 5688 5647 23 86 0 0 chrX 2795901 2795959 -174178181 + AT_rich Low_complexity Low_complexity 1 58 0 571 213 0 0 chrX 2796808 2796916 -174177224 - AluJb SINE Alu -23 289 182 25 0 0 0 chrX 2796927 2796952 -174177188 + AT_rich Low_complexity Low_complexity 1 25 0 729 160 8 0 chrX 2797015 2797140 -174177000 + MER57A LTR ERV1 2 127 -276 269 239 11 54 chrX 2797304 2797396 -174176744 + (CATA)n Simple_repeat Simple_repeat 4 91 0 236 322 0 0 chrX 2797396 2797486 -174176654 - L1MC4 LINE L1 -1339 6703 6614 346 194 0 60 chrX 2797491 2797814 -174176326 + (TA)n Simple_repeat Simple_repeat 1 303 0 219 226 9 17 chrX 2797852 2797905 -174176235 + (TA)n Simple_repeat Simple_repeat 1 53 -61 2601 131 5 38 chrX 2797905 2798354 -174175786 - Tigger2a DNA MER2_type 0 434 1 219 226 9 17 chrX 2798354 2798415 -174175725 + (TA)n Simple_repeat Simple_repeat 53 114 0 282 179 0 0 chrX 2798851 2798907 -174175233 + (TG)n Simple_repeat Simple_repeat 2 57 0 21 89 0 0 chrX 2799096 2799152 -174174988 + AT_rich Low_complexity Low_complexity 1 56 0 370 256 24 18 chrX 2799245 2799409 -174174731 + (TA)n Simple_repeat Simple_repeat 1 165 0 341 273 16 44 chrX 2799348 2799531 -174174609 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 * 298 275 158 18 chrX 2800057 2800228 -174173912 - MIR SINE MIR -40 222 28 2198 105 7 0 chrX 2800601 2800896 -174173244 - AluSx SINE Alu -15 297 1 300 27 0 0 chrX 2801346 2801383 -174172757 + (CA)n Simple_repeat Simple_repeat 2 38 0 1508 170 11 11 chrX 2801413 2801719 -174172421 - AluSx SINE Alu 0 306 1 400 122 22 78 chrX 2801823 2802003 -174172137 + (TTATA)n Simple_repeat Simple_repeat 1 170 0 27 49 0 0 chrX 2802009 2802050 -174172090 + AT_rich Low_complexity Low_complexity 1 41 0 219 200 29 0 chrX 2802115 2802185 -174171955 + (TA)n Simple_repeat Simple_repeat 1 72 0 35 54 0 0 chrX 2802185 2802241 -174171899 + AT_rich Low_complexity Low_complexity 1 56 0 475 260 94 43 chrX 2802400 2802432 -174171708 - MLT1G LTR MaLR -2 588 559 1376 193 128 21 chrX 2802432 2802815 -174171325 - MSTB LTR MaLR 0 426 3 475 260 94 43 chrX 2802815 2803017 -174171123 - MLT1G LTR MaLR -31 559 342 262 245 170 68 chrX 2803010 2803157 -174170983 - MLT1G LTR MaLR -332 223 62 * 1636 175 3 29 chrX 2803158 2803466 -174170674 - AluJo SINE Alu -7 305 6 1675 177 3 23 chrX 2804028 2804333 -174169807 - AluJb SINE Alu -13 299 1 568 0 65 0 chrX 2805099 2805176 -174168964 + (TTTTA)n Simple_repeat Simple_repeat 2 83 0 1596 175 0 34 chrX 2805178 2805470 -174168670 - AluJo SINE Alu -30 282 1 209 222 0 0 chrX 2805509 2805554 -174168586 + MIR SINE MIR 218 262 0 22 0 0 0 chrX 2805705 2805727 -174168413 + AT_rich Low_complexity Low_complexity 1 22 0 2137 136 21 42 chrX 2806492 2806874 -174167266 - THE1C LTR MaLR -1 374 1 223 236 0 0 chrX 2807165 2807220 -174166920 + (TG)n Simple_repeat Simple_repeat 2 56 0 262 333 14 14 chrX 2808197 2808344 -174165796 - MIR3 SINE MIR -11 197 51 269 116 23 0 chrX 2808865 2808908 -174165232 + MLT1D LTR MaLR 6 49 -456 253 213 43 0 chrX 2808909 2808956 -174165184 + MLT1D LTR MaLR 1 49 -456 261 163 23 0 chrX 2808963 2809006 -174165134 + MLT1D LTR MaLR 7 50 -455 285 140 40 40 chrX 2809007 2809057 -174165083 + MLT1D LTR MaLR 1 50 -455 308 143 20 0 chrX 2809058 2809107 -174165033 + MLT1D LTR MaLR 1 50 -455 298 189 19 0 chrX 2809108 2809161 -174164979 + MLT1D LTR MaLR 1 54 -451 255 167 24 0 chrX 2809154 2809196 -174164944 + MLT1D LTR MaLR 8 50 -455 * 285 116 47 0 chrX 2809197 2809240 -174164900 + MLT1D LTR MaLR 1 45 -460 263 240 20 0 chrX 2809247 2809297 -174164843 + MLT1D LTR MaLR 1 51 -454 300 213 107 0 chrX 2809297 2809372 -174164768 + MLT1D LTR MaLR 1 83 -422 1691 222 96 14 chrX 2809474 2809818 -174164322 + MLT1D LTR MaLR 43 430 -75 3028 93 7 0 chrX 2809818 2810236 -174163904 - L1PA13 LINE L1 0 6163 5743 1691 222 96 14 chrX 2810236 2810319 -174163821 + MLT1D LTR MaLR 430 505 0 476 191 44 7 chrX 2810925 2811061 -174163079 + MER96B DNA MER1_type? 81 221 -196 24 0 0 0 chrX 2811159 2811183 -174162957 + AT_rich Low_complexity Low_complexity 1 24 0 1573 163 0 23 chrX 2811186 2811410 -174162730 - AluSx SINE Alu -53 259 40 5156 76 3 39 chrX 2811410 2812124 -174162016 + LTR12 LTR ERV1 1 688 0 1573 163 0 23 chrX 2812124 2812157 -174161983 - AluSx SINE Alu -272 40 8 2034 212 47 53 chrX 2812161 2812556 -174161584 - L1MB7 LINE L1 -69 6115 5724 1406 33 33 0 chrX 2812556 2812738 -174161402 - L1MA1 LINE L1 -4 6298 6111 2034 212 47 53 chrX 2812738 2813002 -174161138 - L1MB7 LINE L1 -460 5724 5460 233 167 0 0 chrX 2813048 2813096 -174161044 - L1M4c LINE L1 -3948 2698 2651 1542 232 64 127 chrX 2813164 2814247 -174159893 - L1M4c LINE L1 -5512 1030 16 1657 201 3 23 chrX 2815204 2815513 -174158627 + AluJb SINE Alu 1 303 -9 505 226 34 45 chrX 2816041 2816218 -174157922 + MER96B DNA MER1_type? 1 175 -242 2559 52 3 0 chrX 2816289 2816596 -174157544 - AluY SINE Alu -3 308 1 961 245 21 10 chrX 2816759 2817117 -174157023 + MLT1B LTR MaLR 1 343 -124 911 261 26 15 chrX 2817121 2817393 -174156747 + MLT1C LTR MaLR 193 467 0 1599 155 143 103 chrX 2818257 2818753 -174155387 - L1MB3 LINE L1 -7 6176 5661 572 158 18 26 chrX 2818753 2818849 -174155291 - AluJo/FRAM SINE Alu 0 312 216 1478 156 3 90 chrX 2818849 2819150 -174154990 - AluJb SINE Alu -37 275 1 572 158 18 26 chrX 2819150 2819167 -174154973 - AluJo/FRAM SINE Alu -96 216 200 253 173 19 0 chrX 2819167 2819219 -174154921 - L1MB3 LINE L1 -647 5658 5606 369 119 104 0 chrX 2819219 2819286 -174154854 - MADE1 DNA Mariner 0 80 7 791 261 20 5 chrX 2819617 2819820 -174154320 - MER58A DNA MER1_type 0 224 19 807 204 91 72 chrX 2820163 2820570 -174153570 - MLT2B1 LTR ERVL 0 520 1 1274 84 6 12 chrX 2820606 2820772 -174153368 - AluSp SINE Alu -16 297 133 950 119 34 17 chrX 2820876 2821053 -174153087 - AluSq SINE Alu -129 184 5 1466 185 78 37 chrX 2821132 2821515 -174152625 + LTR2B LTR ERV1 34 432 -58 392 329 117 49 chrX 2821956 2822953 -174151187 - L1 LINE L1 -942 5204 4128 318 106 0 0 chrX 2823033 2823080 -174151060 + (TA)n Simple_repeat Simple_repeat 2 48 0 456 213 110 55 chrX 2823340 2823504 -174150636 - MER58B DNA MER1_type -1 340 168 1014 176 0 6 chrX 2824614 2824773 -174149367 - AluJb SINE Alu -26 286 129 833 166 11 17 chrX 2825016 2825338 -174148802 + GA-rich Low_complexity Low_complexity 1 320 0 249 263 13 0 chrX 2826675 2826751 -174147389 - L1MC3 LINE L1 -304 7481 7405 239 116 47 0 chrX 2826778 2826821 -174147319 + MER4A LTR ERV1 54 98 -566 1690 135 3 30 chrX 2826821 2827176 -174146964 + MER4A LTR ERV1 261 664 0 1282 221 46 14 chrX 2827176 2827547 -174146593 - L1MC3 LINE L1 -377 7408 7026 294 375 71 6 chrX 2827858 2828026 -174146114 + MIR SINE MIR 47 225 -37 1349 196 0 41 chrX 2828088 2828358 -174145782 + AluJo SINE Alu 30 288 -24 702 154 0 0 chrX 2828365 2828469 -174145671 + FRAM SINE Alu 37 140 -36 21 0 0 0 chrX 2829441 2829462 -174144678 + AT_rich Low_complexity Low_complexity 1 21 0 2235 70 0 7 chrX 2829955 2830266 -174143874 - AluY SINE Alu 0 309 1 2420 203 30 16 chrX 2830266 2830786 -174143354 + MLT2B3 LTR ERVL 1 418 -35 364 186 32 8 chrX 2830819 2830943 -174143197 + GA-rich Low_complexity Low_complexity 2 128 0 563 175 24 0 chrX 2830978 2831197 -174142943 + GA-rich Low_complexity Low_complexity 1 224 0 273 119 0 0 chrX 2831382 2831424 -174142716 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 71 0 0 chrX 2832122 2832164 -174141976 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chrX 2834254 2834284 -174139856 + AT_rich Low_complexity Low_complexity 1 30 0 1487 176 3 83 chrX 2834321 2834634 -174139506 + AluJb SINE Alu 1 288 -24 197 33 33 0 chrX 2834643 2834673 -174139467 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 22 35 0 0 chrX 2834765 2834794 -174139346 + AT_rich Low_complexity Low_complexity 1 29 0 2352 57 3 0 chrX 2834948 2835276 -174138864 + AluY SINE Alu 1 329 0 423 0 0 0 chrX 2835522 2835569 -174138571 + (TG)n Simple_repeat Simple_repeat 2 48 0 2013 131 3 0 chrX 2836494 2836811 -174137329 - AluSx SINE Alu 0 318 1 2962 146 60 86 chrX 2837145 2837218 -174136922 - LTR8A LTR ERV1 0 727 654 2055 136 0 23 chrX 2837218 2837527 -174136613 + AluSx SINE Alu 1 302 -10 2962 146 60 86 chrX 2837527 2838199 -174135941 - LTR8A LTR ERV1 -73 654 1 1650 202 70 30 chrX 2838233 2838417 -174135723 + MER50 LTR ERV1 287 462 -272 2418 114 28 17 chrX 2838417 2838777 -174135363 - THE1B LTR MaLR 0 364 1 1650 202 70 30 chrX 2838777 2839023 -174135117 + MER50 LTR ERV1 462 734 0 308 261 0 0 chrX 2840989 2841054 -174133086 - MER2 DNA MER2_type -1 344 280 672 124 80 7 chrX 2841073 2841210 -174132930 + L1M LINE L1 5265 5411 -889 1508 135 7 52 chrX 2841608 2841896 -174132244 + Tigger4(Zombi) DNA MER2_type 2 276 -2455 2217 120 0 0 chrX 2841896 2842196 -174131944 + AluSx SINE Alu 1 300 -12 1040 122 109 0 chrX 2842198 2842354 -174131786 + AluSg/x SINE Alu 140 312 0 1753 139 13 3 chrX 2842365 2842666 -174131474 + Tigger4(Zombi) DNA MER2_type 269 572 -2159 2679 158 13 22 chrX 2842672 2842924 -174131216 + Tigger4(Zombi) DNA MER2_type 2144 2397 -334 1875 164 27 6 chrX 2842924 2843254 -174130886 - MER1B DNA MER1_type 0 337 1 2679 158 13 22 chrX 2843254 2843539 -174130601 + Tigger4(Zombi) DNA MER2_type 2397 2676 -55 23 0 0 0 chrX 2843677 2843700 -174130440 + AT_rich Low_complexity Low_complexity 1 23 0 574 254 86 10 chrX 2844802 2844999 -174129141 - MER20 DNA MER1_type -4 215 4 691 142 15 8 chrX 2845221 2845355 -174128785 + CT-rich Low_complexity Low_complexity 1 135 0 1714 167 31 7 chrX 2845355 2845642 -174128498 - AluJo SINE Alu -18 294 1 2114 113 49 0 chrX 2845786 2846070 -174128070 - AluSx SINE Alu -14 298 1 2009 146 31 29 chrX 2846214 2846599 -174127541 + MLT1B LTR MaLR 1 386 -4 830 239 0 0 chrX 2847557 2847720 -174126420 + FRAM SINE Alu 1 160 -16 1349 186 48 35 chrX 2848159 2848333 -174125807 - MER77 LTR ERV1 -17 588 407 2257 94 0 17 chrX 2848333 2848632 -174125508 - AluY SINE Alu -17 294 1 1349 186 48 35 chrX 2848632 2848768 -174125372 - MER77 LTR ERV1 -198 407 274 545 228 35 17 chrX 2848908 2849072 -174125068 - MLT1A1 LTR MaLR 0 365 216 1435 176 87 13 chrX 2899216 2899528 -174074612 + MER44D DNA MER2_type 5 609 0 1420 187 60 18 chrX 2899750 2900033 -174074107 + AluJb SINE Alu 1 295 -17 186 43 0 0 chrX 2900043 2900066 -174074074 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 2048 171 16 5 chrX 2900884 2901270 -174072870 - MLT1B LTR MaLR 0 390 1 321 283 232 0 chrX 2901527 2901665 -174072475 - MER5A DNA MER1_type -7 182 13 1333 163 57 28 chrX 2901922 2902205 -174071935 + AluJo SINE Alu 1 291 -21 22 0 0 0 chrX 2902368 2902390 -174071750 + AT_rich Low_complexity Low_complexity 1 22 0 1921 167 3 15 chrX 2902624 2902959 -174071181 + MER47A DNA MER2_type 36 366 0 1792 212 51 36 chrX 2903120 2903416 -174070724 + L1MD1 LINE L1 5764 6071 -171 1958 140 140 8 chrX 2903416 2903794 -174070346 + MSTA LTR MaLR 1 428 0 1792 212 51 36 chrX 2903794 2903969 -174070171 + L1MD1 LINE L1 6071 6242 0 1005 137 0 0 chrX 2907258 2907411 -174066729 + AluSg/x SINE Alu 132 284 -28 28 48 0 0 chrX 2907417 2907459 -174066681 + AT_rich Low_complexity Low_complexity 1 42 0 1048 228 94 22 chrX 2907675 2907995 -174066145 + MER2 DNA MER2_type 1 343 -1 1672 147 26 23 chrX 2908567 2908873 -174065267 - MLT1B LTR MaLR -83 307 1 378 0 0 0 chrX 2908938 2908980 -174065160 + (CA)n Simple_repeat Simple_repeat 2 43 0 1799 82 4 0 chrX 2909036 2909267 -174064873 - AluSp SINE Alu -17 296 65 1356 203 41 24 chrX 2910103 2910394 -174063746 - AluJo SINE Alu -5 297 2 22 35 0 0 chrX 2910664 2910693 -174063447 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 2910800 2910821 -174063319 + AT_rich Low_complexity Low_complexity 1 21 0 218 96 0 58 chrX 2910889 2910941 -174063199 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 572 292 17 43 chrX 2911270 2911503 -174062637 - MLT1E2 LTR MaLR -8 618 392 1255 129 224 11 chrX 2911523 2911786 -174062354 - MER47A DNA MER2_type -28 338 20 467 281 45 41 chrX 2911786 2912053 -174062087 - MLT1E2 LTR MaLR -239 387 120 2374 263 146 37 chrX 2912091 2913349 -174060791 + L1MD1 LINE L1 210 1605 -4935 1926 210 24 118 chrX 2913450 2913816 -174060324 + L1PA16 LINE L1 5499 5767 -399 414 100 0 0 chrX 2913816 2913876 -174060264 + (TA)n Simple_repeat Simple_repeat 1 60 0 1926 210 24 118 chrX 2913876 2914219 -174059921 + L1PA16 LINE L1 5767 6141 -25 1869 219 48 41 chrX 2914228 2914689 -174059451 + L1MD1 LINE L1 5374 5830 -806 1630 193 13 10 chrX 2914689 2914989 -174059151 + AluJo SINE Alu 2 302 -10 1869 219 48 41 chrX 2914989 2915384 -174058756 + L1MD1 LINE L1 5830 6220 -416 485 171 77 0 chrX 2915384 2915501 -174058639 + L1MD1 LINE L1 6500 6625 -11 1936 164 3 0 chrX 2915682 2915987 -174058153 - AluJb SINE Alu -6 306 1 229 289 70 26 chrX 2916255 2916369 -174057771 - MIR SINE MIR -32 230 112 731 130 41 0 chrX 2917700 2917869 -174056271 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 1961 178 113 10 chrX 2917908 2918325 -174055815 - MLT2B1 LTR ERVL -60 460 1 284 317 37 38 chrX 2918650 2918798 -174055342 - MIR SINE MIR -74 134 12 2173 106 3 10 chrX 2919560 2919853 -174054287 - AluSp SINE Alu -22 291 1 1053 255 92 10 chrX 2919878 2920270 -174053870 - L1MC3 LINE L1 0 7785 7362 32 43 0 0 chrX 2920832 2920878 -174053262 + AT_rich Low_complexity Low_complexity 1 46 0 2209 96 24 0 chrX 2921524 2921650 -174052490 + AluSx SINE Alu 1 123 -189 189 0 0 0 chrX 2921650 2921671 -174052469 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2209 96 24 0 chrX 2921671 2921837 -174052303 + AluSx SINE Alu 123 300 -12 22 0 0 0 chrX 2922130 2922152 -174051988 + AT_rich Low_complexity Low_complexity 1 22 0 312 232 159 0 chrX 2922284 2922422 -174051718 - Charlie2a DNA MER1_type -1784 1078 919 21 57 0 0 chrX 2922547 2922582 -174051558 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chrX 2922991 2923017 -174051123 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 22 0 0 0 chrX 2923078 2923100 -174051040 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chrX 2923264 2923315 -174050825 + AT_rich Low_complexity Low_complexity 1 51 0 26951 39 39 1 chrX 2923575 2927130 -174047010 + L1P LINE L1 3 3694 -2452 301 246 0 0 chrX 2927342 2927411 -174046729 + L1MA1 LINE L1 6225 6293 -9 1379 243 78 10 chrX 2927488 2927887 -174046253 - L1MC3 LINE L1 -611 7174 6749 472 163 38 22 chrX 2928150 2928464 -174045676 + (TCTA)n Simple_repeat Simple_repeat 1 319 0 333 323 84 21 chrX 2928738 2929023 -174045117 - L1M4 LINE L1 -2461 3685 3383 23 0 0 0 chrX 2929052 2929075 -174045065 + AT_rich Low_complexity Low_complexity 1 23 0 197 132 26 0 chrX 2929142 2929180 -174044960 + CT-rich Low_complexity Low_complexity 2 40 0 303 28 0 0 chrX 2929966 2930002 -174044138 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 366 23 0 0 chrX 2930001 2930044 -174044096 + (TC)n Simple_repeat Simple_repeat 1 43 0 304 197 7 148 chrX 2930212 2930354 -174043786 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 1677 126 90 44 chrX 2930340 2930465 -174043675 + Tigger3(Golem) DNA MER2_type 2284 2402 -626 1707 195 3 3 chrX 2930465 2930792 -174043348 + AluJo SINE Alu 1 312 0 1677 126 90 44 chrX 2930792 2931055 -174043085 + Tigger3(Golem) DNA MER2_type 2402 2690 -338 360 188 0 0 chrX 2931279 2931359 -174042781 + L1MEc LINE L1 2177 2256 -4140 497 308 44 56 chrX 2931394 2931732 -174042408 + L1MEc LINE L1 2255 2588 -3627 640 212 9 0 chrX 2931746 2931975 -174042165 + GA-rich Low_complexity Low_complexity 1 231 0 587 219 20 9 chrX 2932007 2932359 -174041781 + GA-rich Low_complexity Low_complexity 1 356 0 2362 166 2 5 chrX 2933302 2933713 -174040427 + MER66B LTR ERV1 1 410 -76 431 298 31 31 chrX 2934295 2934456 -174039684 - MER5A DNA MER1_type -27 162 2 1873 147 3 13 chrX 2934570 2934883 -174039257 + AluSx SINE Alu 1 310 -2 3018 190 11 54 chrX 2935005 2935225 -174038915 + LTR51 LTR ERV1 1 229 -442 2125 116 0 3 chrX 2935225 2935543 -174038597 - AluSx SINE Alu 0 317 1 3018 190 11 54 chrX 2935543 2936021 -174038119 + LTR51 LTR ERV1 229 670 -1 2505 59 0 3 chrX 2936222 2936525 -174037615 + AluY SINE Alu 3 304 -7 2401 195 27 63 chrX 2936607 2937242 -174036898 - LTR9 LTR ERV1 0 612 1 1923 229 24 15 chrX 2937417 2937880 -174036260 + LTR24 LTR ERV1 1 467 0 1884 149 3 29 chrX 2937899 2938208 -174035932 - AluJo SINE Alu -11 301 1 2054 125 76 15 chrX 2938501 2938844 -174035296 + THE1B LTR MaLR 1 364 0 230 136 45 45 chrX 2939322 2939388 -174034752 + L1MA9 LINE L1 6239 6304 -8 1619 110 195 23 chrX 2940506 2940814 -174033326 - MER4A LTR ERV1 -43 621 261 485 155 21 10 chrX 2940814 2940911 -174033229 - MER4A LTR ERV1 -566 98 1 288 0 0 0 chrX 2941593 2941625 -174032515 + (TATG)n Simple_repeat Simple_repeat 1 32 0 873 105 35 0 chrX 2941625 2941796 -174032344 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 189 74 0 0 chrX 2941828 2941855 -174032285 + (TC)n Simple_repeat Simple_repeat 2 28 0 427 133 0 42 chrX 2941860 2941980 -174032160 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 413 293 33 13 chrX 2943343 2943493 -174030647 + MIR SINE MIR 107 259 -3 190 107 47 67 chrX 2943532 2943681 -174030459 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 33 25 0 0 chrX 2944252 2944292 -174029848 + AT_rich Low_complexity Low_complexity 1 40 0 213 121 0 0 chrX 2944957 2944990 -174029150 + (T)n Simple_repeat Simple_repeat 1 33 0 465 19 0 0 chrX 2945710 2945764 -174028376 + (TG)n Simple_repeat Simple_repeat 1 54 0 1637 161 3 39 chrX 2945815 2946021 -174028119 - AluJo SINE Alu -18 294 101 2429 107 27 3 chrX 2946021 2946387 -174027753 + THE1C LTR MaLR 1 375 0 1637 161 3 39 chrX 2946387 2946485 -174027655 - AluJo SINE Alu -211 101 1 1067 70 23 12 chrX 2946988 2947159 -174026981 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 720 89 16 8 chrX 2947273 2947397 -174026743 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 1883 180 12 21 chrX 2947881 2948011 -174026129 + MLT2B2 LTR ERVL 1 131 -384 2373 118 14 11 chrX 2948011 2948374 -174025766 + THE1B LTR MaLR 1 364 0 1883 180 12 21 chrX 2948374 2948675 -174025465 + MLT2B2 LTR ERVL 131 476 -39 427 221 16 0 chrX 2948707 2948834 -174025306 + (TCCA)n Simple_repeat Simple_repeat 1 129 0 2069 153 32 8 chrX 2949521 2949894 -174024246 + MLT1B LTR MaLR 1 382 -8 24 0 0 0 chrX 2950915 2950939 -174023201 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrX 2951751 2951779 -174022361 + AT_rich Low_complexity Low_complexity 1 28 0 1538 160 9 0 chrX 2951781 2952012 -174022128 - AluJo SINE Alu -75 237 5 986 182 0 23 chrX 2952526 2952702 -174021438 - AluJ SINE Alu 0 312 141 710 184 102 20 chrX 2952739 2952762 -174021378 - AluJ SINE Alu -153 159 139 189 0 0 0 chrX 2952762 2952783 -174021357 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 710 184 102 20 chrX 2952783 2952906 -174021234 - AluJ SINE Alu -173 139 1 5426 45 1 0 chrX 2953319 2953980 -174020160 + L1PA5 LINE L1 5486 6147 -7 2626 116 3 0 chrX 2955367 2955729 -174018411 + THE1B LTR MaLR 1 363 -1 1422 178 21 0 chrX 2955766 2956047 -174018093 + L1PB4 LINE L1 5868 6154 -2 25 65 0 0 chrX 2956054 2956100 -174018040 + AT_rich Low_complexity Low_complexity 1 46 0 2029 123 0 7 chrX 2956263 2956563 -174017577 + AluJb SINE Alu 1 298 -14 832 159 39 0 chrX 2956691 2956963 -174017177 - L1MA5A LINE L1 -5 6292 5961 2259 113 0 0 chrX 2956963 2957273 -174016867 - AluSq SINE Alu -3 310 1 832 159 39 0 chrX 2957273 2957323 -174016817 - L1MA5A LINE L1 -336 5961 5914 855 171 0 0 chrX 2957351 2957497 -174016643 - L1PA16 LINE L1 -2 6164 6019 233 308 33 11 chrX 2957883 2957974 -174016166 + MIR SINE MIR 35 127 -135 1905 129 42 58 chrX 2958327 2958708 -174015432 - THE1C LTR MaLR 0 375 1 781 219 26 53 chrX 2958875 2959477 -174014663 + MER4C LTR ERV1 1 693 -6 208 299 103 10 chrX 2960898 2960995 -174013145 - MER5A DNA MER1_type -77 112 7 433 304 131 6 chrX 2961009 2961177 -174012963 - MER5A DNA MER1_type 0 189 1 199 316 127 0 chrX 2961193 2961272 -174012868 - MER5B DNA MER1_type 0 178 90 2267 186 20 40 chrX 2961275 2961830 -174012310 - L1PA16 LINE L1 -2 6164 5621 3672 205 27 64 chrX 2961945 2962989 -174011151 - L1PA16 LINE L1 -784 5362 4358 195 333 0 0 chrX 2963005 2963068 -174011072 + MER5B DNA MER1_type 115 177 -1 493 219 5 10 chrX 2963641 2963843 -174010297 + CT-rich Low_complexity Low_complexity 1 200 0 824 185 0 6 chrX 2963856 2964029 -174010111 + CT-rich Low_complexity Low_complexity 3 174 0 221 284 86 12 chrX 2964033 2964114 -174010026 + MIR SINE MIR 108 194 -68 543 185 21 35 chrX 2965479 2965806 -174008334 + CT-rich Low_complexity Low_complexity 1 322 0 251 219 21 31 chrX 2965948 2966044 -174008096 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 286 141 13 26 chrX 2966300 2966343 -174007797 + (TAGA)n Simple_repeat Simple_repeat 1 44 -33 2217 72 27 14 chrX 2966343 2966635 -174007505 + AluSx SINE Alu 11 306 -6 286 141 13 26 chrX 2966635 2966669 -174007471 + (TAGA)n Simple_repeat Simple_repeat 44 77 0 8727 27 2 1 chrX 2967173 2968989 -174005151 - L1PA2 LINE L1 -5 6150 4335 26 0 0 0 chrX 2969494 2969520 -174004620 + AT_rich Low_complexity Low_complexity 1 26 0 1479 186 10 10 chrX 2969906 2970202 -174003938 + AluJb SINE Alu 7 302 -10 2399 164 54 5 chrX 2970745 2971172 -174002968 + MER83 LTR ERV1 1 448 0 1541 206 24 22 chrX 2971389 2971758 -174002382 + L1PA16 LINE L1 5657 6026 -140 639 160 25 15 chrX 2971881 2972047 -174002093 + CT-rich Low_complexity Low_complexity 1 196 -32 201 39 0 0 chrX 2972047 2972073 -174002067 + (TTG)n Simple_repeat Simple_repeat 2 27 0 639 160 25 15 chrX 2972073 2972107 -174002033 + CT-rich Low_complexity Low_complexity 196 228 0 349 123 0 18 chrX 2973416 2973469 -174000671 - AluJo SINE Alu -12 290 239 1459 219 156 72 chrX 2973469 2973669 -174000471 + LTR1 LTR ERV1 1 183 -602 246 62 0 0 chrX 2973669 2973701 -174000439 + (CA)n Simple_repeat Simple_repeat 1 32 0 1459 219 156 72 chrX 2973701 2974223 -173999917 + LTR1 LTR ERV1 183 784 -1 1388 163 0 48 chrX 2974223 2974474 -173999666 - AluJo SINE Alu -70 242 4 531 227 25 81 chrX 2974619 2974818 -173999322 + MER106B DNA MER1_type 1 210 -849 1504 184 12 70 chrX 2974818 2975149 -173998991 + AluJb SINE Alu 1 312 0 531 227 25 81 chrX 2975149 2975178 -173998962 + MER106B DNA MER1_type 210 1043 -16 195 204 0 0 chrX 2975500 2975549 -173998591 + (TA)n Simple_repeat Simple_repeat 1 49 0 2750 164 15 33 chrX 2975684 2976225 -173997915 + LTR26B LTR ERV1 1 531 0 257 320 20 0 chrX 2977202 2977302 -173996838 + MLT1J LTR MaLR 80 181 -330 1828 208 65 114 chrX 2977722 2978095 -173996045 + LTR8A LTR ERV1 1 320 -407 2431 118 5 18 chrX 2978095 2978475 -173995665 + THE1C LTR MaLR 1 375 0 1828 208 65 114 chrX 2978475 2978864 -173995276 + LTR8A LTR ERV1 320 726 -1 324 270 10 0 chrX 2979003 2979103 -173995037 + MLT1I LTR MaLR 309 409 0 432 277 32 26 chrX 2979252 2979407 -173994733 - LTR16A1 LTR ERVL -4 453 298 315 0 0 0 chrX 2980728 2980763 -173993377 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chrX 2980993 2981024 -173993116 + AT_rich Low_complexity Low_complexity 1 31 0 286 247 37 0 chrX 2981581 2981662 -173992478 + (TA)n Simple_repeat Simple_repeat 2 85 0 31 44 0 0 chrX 2981674 2981719 -173992421 + AT_rich Low_complexity Low_complexity 1 45 0 281 161 0 0 chrX 2981722 2981778 -173992362 - L1PB4 LINE L1 -1 6155 6100 186 236 0 0 chrX 2981783 2981838 -173992302 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 34 55 0 0 chrX 2982007 2982062 -173992078 + AT_rich Low_complexity Low_complexity 1 55 0 494 237 119 0 chrX 2982066 2982184 -173991956 - FLAM_A SINE Alu -1 132 1 920 164 0 7 chrX 2982914 2983066 -173991074 + FRAM SINE Alu 2 152 -14 899 293 86 112 chrX 2983222 2983889 -173990251 + L2 LINE L2 1839 2522 -791 3150 146 10 2 chrX 2983889 2984381 -173989759 + LOR1a LTR ERV1 1 496 -1 899 293 86 112 chrX 2984381 2984530 -173989610 + L2 LINE L2 2522 2673 -640 1982 129 0 14 chrX 2984530 2984860 -173989280 - AluSx SINE Alu 0 326 1 899 293 86 112 chrX 2984860 2985576 -173988564 + L2 LINE L2 2673 3307 -6 2376 82 0 19 chrX 2986180 2986495 -173987645 + AluY SINE Alu 3 311 0 213 65 0 0 chrX 2986548 2986579 -173987561 + (A)n Simple_repeat Simple_repeat 1 31 0 353 284 34 28 chrX 2986581 2986757 -173987383 + L1MC/D LINE L1 5272 5448 -2360 257 291 25 23 chrX 2986993 2987155 -173986985 + L1MC/D LINE L1 5665 5825 -312 180 0 0 0 chrX 2987182 2987202 -173986938 + (TA)n Simple_repeat Simple_repeat 2 21 0 493 311 58 5 chrX 2987202 2987392 -173986748 - MIR SINE MIR -35 227 28 207 0 0 0 chrX 2987430 2987453 -173986687 + (CATATA)n Simple_repeat Simple_repeat 5 27 0 793 159 0 15 chrX 2987468 2987600 -173986540 + FLAM_C SINE Alu 2 131 -2 268 230 10 10 chrX 2987645 2987745 -173986395 + (TA)n Simple_repeat Simple_repeat 1 100 0 422 88 11 132 chrX 2987748 2987839 -173986301 + MADE1 DNA Mariner 1 80 0 2285 76 6 31 chrX 2988017 2988334 -173985806 + AluY SINE Alu 1 309 -2 26 0 0 0 chrX 2988334 2988360 -173985780 + AT_rich Low_complexity Low_complexity 1 26 0 244 286 128 23 chrX 2989392 2989525 -173984615 - MIR SINE MIR -42 220 74 1566 151 16 87 chrX 2990729 2991041 -173983099 - AluJo SINE Alu -21 291 2 1055 286 68 52 chrX 2991898 2992706 -173981434 - L1ME3A LINE L1 -94 6076 5255 279 299 99 10 chrX 2992766 2992836 -173981304 - L1ME3A LINE L1 -925 5221 5159 2125 135 30 28 chrX 2992836 2993199 -173980941 + THE1B LTR MaLR 1 364 0 279 299 99 10 chrX 2993199 2993329 -173980811 - L1ME3A LINE L1 -987 5159 5003 244 293 166 13 chrX 2993646 2993803 -173980337 - L1ME3A LINE L1 -2272 3874 3694 * 271 272 128 11 chrX 2993796 2993976 -173980164 - L1M4 LINE L1 -1538 4608 4408 353 270 0 0 chrX 2994319 2994393 -173979747 - MER5A DNA MER1_type -99 90 17 1658 197 0 7 chrX 2994876 2995171 -173978969 + AluJo SINE Alu 3 295 -17 1616 193 0 41 chrX 2995234 2995550 -173978590 - AluJb SINE Alu -8 304 2 883 154 83 12 chrX 2998199 2998368 -173975772 + MER20 DNA MER1_type 34 214 -5 21 36 0 0 chrX 2998876 2998904 -173975236 + AT_rich Low_complexity Low_complexity 1 28 0 2441 153 28 19 chrX 2998905 2999335 -173974805 + Tigger2a DNA MER2_type 1 434 0 1945 155 0 0 chrX 2999361 2999668 -173974472 + AluSx SINE Alu 1 307 0 1448 121 56 0 chrX 2999903 3000152 -173973988 - L1MA4 LINE L1 0 6300 6038 380 341 59 36 chrX 3000995 3001353 -173972787 + L1M4 LINE L1 2480 2845 -3301 1802 149 36 0 chrX 3001381 3001683 -173972457 + AluSq SINE Alu 1 313 0 383 123 0 27 chrX 3001689 3001762 -173972378 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 250 171 24 49 chrX 3001882 3001964 -173972176 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2650 182 34 61 chrX 3002124 3003111 -173971029 + L1MA10 LINE L1 4626 5607 -561 662 147 0 18 chrX 3003111 3003220 -173970920 + FLAM_C SINE Alu 14 120 -23 330 87 0 0 chrX 3003221 3003267 -173970873 + (TA)n Simple_repeat Simple_repeat 1 46 0 3314 178 36 23 chrX 3003271 3004002 -173970138 + L1MA10 LINE L1 5594 6333 -1 410 158 40 0 chrX 3004590 3004666 -173969474 + MADE1 DNA Mariner 2 80 0 24 0 0 0 chrX 3005104 3005128 -173969012 + AT_rich Low_complexity Low_complexity 1 24 0 1341 185 14 42 chrX 3005496 3005664 -173968476 + AluJb SINE Alu 1 159 -153 2048 139 232 34 chrX 3005664 3006104 -173968036 - MER1A DNA MER1_type 0 527 1 1341 185 14 42 chrX 3006104 3006222 -173967918 + AluJb SINE Alu 159 279 -33 213 65 0 0 chrX 3006222 3006253 -173967887 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 266 159 48 28 chrX 3006626 3006771 -173967369 + (TCTA)n Simple_repeat Simple_repeat 2 149 0 23 0 0 0 chrX 3006929 3006952 -173967188 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chrX 3007574 3007606 -173966534 + AT_rich Low_complexity Low_complexity 1 32 0 37 52 0 0 chrX 3007627 3007685 -173966455 + AT_rich Low_complexity Low_complexity 1 58 0 2365 274 101 35 chrX 3008473 3010433 -173963707 + L1MEc LINE L1 638 2686 -3529 561 192 20 20 chrX 3010491 3010637 -173963503 - L1MA10 LINE L1 -7 6327 6182 207 114 0 0 chrX 3011076 3011111 -173963029 + (CA)n Simple_repeat Simple_repeat 2 36 0 1062 171 0 6 chrX 3012479 3012660 -173961480 - AluJb SINE Alu -16 296 117 1641 143 68 8 chrX 3012660 3012926 -173961214 - AluJo SINE Alu -30 282 1 2687 162 83 2 chrX 3013175 3013681 -173960459 + MER44D DNA MER2_type 2 603 -2 4104 100 14 88 chrX 3013704 3014421 -173959719 + MER4A LTR ERV1 1 664 0 377 361 132 24 chrX 3014428 3014852 -173959288 - L1MEc LINE L1 -5893 503 34 932 191 0 0 chrX 3015174 3015336 -173958804 - AluJb SINE Alu -4 308 147 182 105 26 0 chrX 3015598 3015636 -173958504 + T-rich Low_complexity Low_complexity 3 41 0 405 127 14 0 chrX 3015715 3015786 -173958354 - AluS SINE Alu -237 72 1 1890 161 6 19 chrX 3018048 3018364 -173955776 + AluJo SINE Alu 1 312 0 1867 170 120 0 chrX 3019298 3019680 -173954460 - MSTA LTR MaLR 0 428 1 9936 149 16 14 chrX 3019718 3020454 -173953686 - L1PA13 LINE L1 -281 5882 5148 2486 125 5 8 chrX 3020454 3020830 -173953310 + THE1C LTR MaLR 1 375 0 9936 149 16 14 chrX 3020830 3021704 -173952436 - L1PA13 LINE L1 -1015 5148 4269 978 93 0 7 chrX 3021704 3021844 -173952296 - MER85 DNA T2_type 0 139 1 9936 149 16 14 chrX 3021844 3022641 -173951499 - L1PA13 LINE L1 -1894 4269 3475 202 386 26 26 chrX 3022862 3023090 -173951050 - L2 LINE L2 -1357 1957 1730 198 0 0 0 chrX 3023190 3023212 -173950928 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1663 184 36 16 chrX 3024368 3024673 -173949467 + AluSx SINE Alu 2 312 0 2555 242 26 29 chrX 3025071 3025425 -173948715 - MER76 LTR ERV -29 659 306 1793 145 60 33 chrX 3025425 3025790 -173948350 - THE1C LTR MaLR 0 375 1 2555 242 26 29 chrX 3025790 3026096 -173948044 - MER76 LTR ERV -382 306 1 1434 204 3 22 chrX 3026133 3026446 -173947694 + AluJo SINE Alu 1 307 -5 4915 143 35 21 chrX 3027016 3028018 -173946122 + L1PA15 LINE L1 5148 6164 -1 298 201 15 67 chrX 3028422 3028556 -173945584 + (CATATA)n Simple_repeat Simple_repeat 4 130 0 1804 132 3 10 chrX 3028556 3028851 -173945289 + L1PA16 LINE L1 5715 6007 -159 225 224 52 0 chrX 3028850 3028908 -173945232 + L1MD3 LINE L1 6615 6675 -1320 * 1628 143 4 0 chrX 3029766 3030004 -173944136 + AluSx SINE Alu 1 239 -73 189 0 0 0 chrX 3030014 3030035 -173944105 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 530 100 40 0 chrX 3032428 3032528 -173941612 + GA-rich Low_complexity Low_complexity 1 104 0 189 328 28 79 chrX 3032528 3032705 -173941435 - L3 LINE CR1 -25 1552 1385 22 0 0 0 chrX 3032769 3032791 -173941349 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chrX 3033017 3033067 -173941073 + AT_rich Low_complexity Low_complexity 1 50 0 186 351 70 54 chrX 3033256 3033515 -173940625 - L3 LINE CR1 -828 749 487 252 0 0 0 chrX 3033795 3033823 -173940317 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chrX 3034741 3034762 -173939378 + AT_rich Low_complexity Low_complexity 1 21 0 296 316 129 19 chrX 3035746 3035955 -173938185 + L2 LINE L2 1238 1469 -1845 1431 244 37 55 chrX 3035955 3036463 -173937677 - MLT1D LTR MaLR 0 505 7 22 35 0 0 chrX 3037706 3037735 -173936405 + AT_rich Low_complexity Low_complexity 1 29 0 206 264 57 0 chrX 3038506 3038559 -173935581 + MIR SINE MIR 117 172 -90 1688 199 0 0 chrX 3039007 3039294 -173934846 + AluJo SINE Alu 2 288 -24 848 254 55 47 chrX 3039708 3039914 -173934226 - MLT1E LTR MaLR -2 591 381 2775 178 154 13 chrX 3039914 3040549 -173933591 - LTR8A LTR ERV1 -2 725 1 848 254 55 47 chrX 3040549 3040598 -173933542 - MLT1E LTR MaLR -212 381 334 379 329 22 0 chrX 3040659 3040796 -173933344 - MLT1E LTR MaLR -381 212 73 3030 262 103 55 chrX 3040812 3042567 -173931573 + L1MEc LINE L1 2179 4010 -2205 2284 108 0 6 chrX 3042567 3042881 -173931259 + AluSq SINE Alu 1 312 -1 3030 262 103 55 chrX 3042881 3043201 -173930939 + L1MEc LINE L1 4010 4313 -1902 2147 164 47 29 chrX 3043202 3043741 -173930399 + MLT2A2 LTR ERVL 1 554 0 1279 256 116 58 chrX 3043742 3044724 -173929416 + L1MEc LINE L1 4356 5394 -821 * 6053 126 11 14 chrX 3044716 3045647 -173928493 + THE1C-int LTR MaLR 653 1580 0 1823 169 38 22 chrX 3045647 3046013 -173928127 + THE1C LTR MaLR 1 372 -3 255 61 0 0 chrX 3046013 3046046 -173928094 + (CA)n Simple_repeat Simple_repeat 2 34 0 222 267 78 22 chrX 3046046 3046136 -173928004 - MIR SINE MIR -58 204 110 1495 90 4 37 chrX 3046160 3046404 -173927736 - L1MA8 LINE L1 -4 6287 6052 2449 111 3 14 chrX 3046464 3046832 -173927308 - THE1B LTR MaLR 0 364 1 780 184 0 25 chrX 3047663 3047949 -173926191 + GA-rich Low_complexity Low_complexity 1 278 0 629 204 6 17 chrX 3047960 3048141 -173925999 + GA-rich Low_complexity Low_complexity 2 180 0 534 126 32 11 chrX 3048928 3049023 -173925117 + MER4A LTR ERV1 2 98 -566 1628 131 14 78 chrX 3049023 3049390 -173924750 + MER4A LTR ERV1 261 662 -2 2455 62 0 0 chrX 3049663 3049980 -173924160 + AluY SINE Alu 1 317 0 2267 103 3 0 chrX 3051052 3051352 -173922788 - AluSx SINE Alu -11 301 1 3877 158 12 12 chrX 3053687 3054392 -173919748 - MER51C LTR ERV1 -17 623 1 200 225 0 0 chrX 3054703 3054743 -173919397 + MIR SINE MIR 2 41 -221 807 113 0 24 chrX 3054963 3055087 -173919053 + MER4A LTR ERV1 544 664 0 216 217 57 19 chrX 3055343 3055449 -173918691 + (TA)n Simple_repeat Simple_repeat 1 110 0 530 313 106 26 chrX 3055449 3055836 -173918304 - L1MC4a LINE L1 -1880 5928 5511 1703 176 3 23 chrX 3055931 3056233 -173917907 + AluJb SINE Alu 1 296 -16 284 165 39 0 chrX 3056269 3056322 -173917818 + (TA)n Simple_repeat Simple_repeat 1 50 -57 1924 130 55 22 chrX 3056322 3056683 -173917457 + THE1C LTR MaLR 1 373 -2 284 165 39 0 chrX 3056683 3056732 -173917408 + (TA)n Simple_repeat Simple_repeat 50 107 0 1089 211 32 7 chrX 3057060 3057345 -173916795 - MER33 DNA MER1_type -1 323 32 21 0 0 0 chrX 3057952 3057973 -173916167 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chrX 3058913 3058956 -173915184 + AT_rich Low_complexity Low_complexity 1 43 0 194 62 31 0 chrX 3059731 3059763 -173914377 + (TC)n Simple_repeat Simple_repeat 2 34 0 296 245 50 58 chrX 3060413 3060514 -173913626 - MIR SINE MIR -4 258 157 1617 147 125 9 chrX 3060514 3060841 -173913299 + MLT1A1 LTR MaLR 1 365 0 296 245 50 58 chrX 3060841 3060878 -173913262 - MIR SINE MIR -105 157 121 669 184 101 0 chrX 3061092 3061250 -173912890 - L1MA5A LINE L1 -1 6296 6123 904 189 5 16 chrX 3061351 3061541 -173912599 + AluJo SINE Alu 119 306 -6 899 226 76 13 chrX 3061589 3062018 -173912122 + MLT1D LTR MaLR 3 467 0 2282 112 0 6 chrX 3062176 3062490 -173911650 - AluSx SINE Alu 0 312 1 669 269 159 48 chrX 3062664 3062861 -173911279 - L1MD2 LINE L1 -12 6347 6173 201 39 0 0 chrX 3062861 3062887 -173911253 + (TG)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chrX 3062888 3062908 -173911232 + (GA)n Simple_repeat Simple_repeat 2 21 0 669 269 159 48 chrX 3062908 3063080 -173911060 - L1MD2 LINE L1 -185 6174 5935 * 887 109 7 7 chrX 3063072 3063219 -173910921 + L1MA5A LINE L1 5828 5974 -323 1494 194 14 7 chrX 3063448 3063727 -173910413 + AluJo SINE Alu 1 281 -31 2801 16 0 0 chrX 3064134 3064445 -173909695 + AluYa5 SINE Alu 1 311 0 23 0 0 0 chrX 3064445 3064468 -173909672 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chrX 3064564 3064591 -173909549 + (CA)n Simple_repeat Simple_repeat 2 28 0 310 307 206 31 chrX 3064753 3065199 -173908941 + L2 LINE L2 2446 2969 -345 201 171 24 0 chrX 3065850 3065891 -173908249 + C-rich Low_complexity Low_complexity 2 43 0 359 323 48 42 chrX 3065919 3066108 -173908032 + L2 LINE L2 3123 3312 -1 2006 205 93 58 chrX 3066153 3066890 -173907250 - LTR1B LTR ERV1 0 785 29 2211 158 8 74 chrX 3067001 3067500 -173906640 - LOR1a LTR ERV1 0 497 32 1454 103 0 0 chrX 3068138 3068323 -173905817 + AluSx SINE Alu 1 185 -127 1456 170 7 0 chrX 3068323 3068600 -173905540 + L1MA4 LINE L1 5320 5598 -702 1189 150 0 12 chrX 3068604 3068777 -173905363 + FRAM SINE Alu 1 164 -12 2210 144 17 10 chrX 3068777 3069179 -173904961 + L1MA4 LINE L1 5606 6010 -290 1001 129 13 7 chrX 3069283 3069438 -173904702 - AluJo SINE Alu -76 236 81 2670 125 7 7 chrX 3069438 3069847 -173904293 + LTR9B LTR ERV1 236 644 0 2240 154 64 15 chrX 3070102 3070568 -173903572 + L1MB3 LINE L1 5659 6147 -36 2099 150 49 29 chrX 3070569 3071095 -173903045 - MLT2A2 LTR ERVL 0 554 1 4199 143 33 1 chrX 3071514 3072215 -173901925 - LTR39 LTR ERV1 -60 723 1 250 294 110 46 chrX 3072932 3073041 -173901099 - MER5A DNA MER1_type -53 136 21 821 181 6 0 chrX 3073254 3073431 -173900709 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 297 130 0 0 chrX 3073431 3073477 -173900663 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 1016 128 6 0 chrX 3073477 3073557 -173900583 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 1016 128 6 0 chrX 3073557 3073736 -173900404 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 228 231 0 0 chrX 3073834 3073886 -173900254 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 538 141 207 71 chrX 3074588 3074837 -173899303 - MER4C LTR ERV1 -20 445 169 1042 124 54 158 chrX 3074842 3075228 -173898912 - MER4A LTR ERV1 -318 346 1 2660 172 103 48 chrX 3076279 3076966 -173897174 - LTR8A LTR ERV1 0 727 3 345 364 0 0 chrX 3076997 3077126 -173897014 - MIR SINE MIR -6 256 128 540 317 6 0 chrX 3077153 3077317 -173896823 + MLT2F LTR ERVL 432 596 -67 21 36 0 0 chrX 3077562 3077590 -173896550 + AT_rich Low_complexity Low_complexity 1 28 0 3931 123 8 9 chrX 3077722 3077903 -173896237 - MER41B LTR ERV1 0 635 455 1756 157 29 32 chrX 3077903 3078247 -173895893 + MER61A LTR ERV1 1 343 0 3931 123 8 9 chrX 3078247 3078701 -173895439 - MER41B LTR ERV1 -180 455 1 2016 122 0 33 chrX 3079326 3079629 -173894511 + AluSx SINE Alu 14 306 -6 2455 68 0 13 chrX 3081102 3081413 -173892727 + AluY SINE Alu 1 307 -4 186 103 0 0 chrX 3081468 3081497 -173892643 + (TG)n Simple_repeat Simple_repeat 2 30 0 1999 187 6 3 chrX 3081504 3081868 -173892272 + MLT1A1 LTR MaLR 1 365 0 233 300 157 33 chrX 3082110 3082320 -173891820 - L2 LINE L2 -597 2717 2482 317 205 0 13 chrX 3082389 3082467 -173891673 - LTR52 LTR ERVL -340 81 5 2439 231 20 38 chrX 3082859 3083169 -173890971 + MER82 DNA MER2_type 1 315 -338 2380 165 68 4 chrX 3083169 3083636 -173890504 + LOR1a LTR ERV1 1 497 0 2439 231 20 38 chrX 3083636 3083988 -173890152 + MER82 DNA MER2_type 315 651 -2 3968 156 13 11 chrX 3084945 3085655 -173888485 - MER50 LTR ERV1 -23 711 1 2676 175 42 43 chrX 3085947 3086297 -173887843 + MER4D LTR ERV1 1 351 -552 258 32 0 0 chrX 3086297 3086328 -173887812 + (TG)n Simple_repeat Simple_repeat 1 31 0 2676 175 42 43 chrX 3086328 3086643 -173887497 + MER4D LTR ERV1 351 665 -238 1902 70 4 15 chrX 3086643 3086916 -173887224 + MER41A LTR ERV1 1 270 -284 254 190 35 0 chrX 3086916 3086974 -173887166 + LTR1B LTR ERV1 767 826 0 * 3532 169 1 29 chrX 3086974 3087252 -173886888 + LTR39 LTR ERV1 152 436 -347 1817 144 0 27 chrX 3087252 3087595 -173886545 - AluSx SINE Alu 0 335 1 3532 169 1 29 chrX 3087595 3087965 -173886175 + LTR39 LTR ERV1 436 783 0 575 255 185 8 chrX 3089719 3089978 -173884162 - MLT1F LTR MaLR 0 542 238 35 126 0 0 chrX 3090041 3090335 -173883805 + AT_rich Low_complexity Low_complexity 1 294 0 219 242 19 32 chrX 3090510 3090667 -173883473 + (TTAAA)n Simple_repeat Simple_repeat 5 159 0 43 115 0 0 chrX 3090673 3090891 -173883249 + AT_rich Low_complexity Low_complexity 1 218 0 302 266 16 38 chrX 3090962 3091146 -173882994 + (TA)n Simple_repeat Simple_repeat 1 180 0 544 186 90 42 chrX 3091146 3091227 -173882913 - L1MB4 LINE L1 -28 6152 6076 2227 161 29 0 chrX 3091227 3091606 -173882534 + MLT1B LTR MaLR 1 390 0 544 186 90 42 chrX 3091606 3091691 -173882449 - L1MB4 LINE L1 -104 6076 5978 1909 104 156 9 chrX 3091921 3092247 -173881893 - THE1C LTR MaLR -1 374 1 376 182 0 107 chrX 3092567 3092622 -173881518 - L1MB4 LINE L1 -202 5978 5941 1738 175 3 17 chrX 3092622 3092913 -173881227 - AluJo SINE Alu -25 287 1 376 182 0 107 chrX 3092913 3092978 -173881162 - L1MB4 LINE L1 -239 5941 5871 424 331 0 18 chrX 3092983 3093149 -173880991 - MLT1F LTR MaLR -378 164 2 198 150 0 0 chrX 3093188 3093228 -173880912 + (CCTA)n Simple_repeat Simple_repeat 3 42 0 2059 122 64 103 chrX 3093315 3093781 -173880359 - LTR47A LTR ERVL 0 452 5 288 312 185 0 chrX 3094469 3094658 -173879482 + L2 LINE L2 2259 2482 -832 545 129 11 0 chrX 3094853 3094946 -173879194 + G-rich Low_complexity Low_complexity 5 98 0 1568 193 3 20 chrX 3095113 3095419 -173878721 + AluJo SINE Alu 1 301 -11 46 45 0 0 chrX 3096490 3096557 -173877583 + AT_rich Low_complexity Low_complexity 1 67 0 1162 123 10 5 chrX 3096702 3096897 -173877243 + L1MA4A LINE L1 6102 6297 -6 497 238 31 21 chrX 3097166 3097359 -173876781 - L1MD3 LINE L1 0 7995 7801 186 350 15 58 chrX 3097467 3097604 -173876536 - MIR SINE MIR -131 131 1 1101 63 0 0 chrX 3098599 3098781 -173875359 + L1PA10 LINE L1 6006 6187 0 342 77 39 0 chrX 3098860 3098912 -173875228 + MLT2A2 LTR ERVL 400 453 0 21 0 0 0 chrX 3099391 3099412 -173874728 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrX 3099527 3099568 -173874572 + (TA)n Simple_repeat Simple_repeat 1 41 0 1679 174 7 26 chrX 3100256 3100566 -173873574 + AluJo SINE Alu 2 305 -7 234 0 0 0 chrX 3100789 3100815 -173873325 + (TTG)n Simple_repeat Simple_repeat 2 27 0 208 231 0 0 chrX 3101787 3101826 -173872314 + polypurine Low_complexity Low_complexity 2 40 0 483 194 14 14 chrX 3101831 3101970 -173872170 + GA-rich Low_complexity Low_complexity 3 141 0 553 141 0 63 chrX 3101983 3102174 -173871966 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 211 253 30 0 chrX 3102196 3102295 -173871845 + GA-rich Low_complexity Low_complexity 4 105 0 * 314 115 16 0 chrX 3102285 3102346 -173871794 + (GGAGA)n Simple_repeat Simple_repeat 4 65 0 441 0 0 0 chrX 3102662 3102711 -173871429 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 328 309 0 0 chrX 3102747 3102841 -173871299 - MIR SINE MIR -8 254 161 208 191 61 41 chrX 3102841 3102988 -173871152 + (TTATG)n Simple_repeat Simple_repeat 5 154 0 1572 195 76 24 chrX 3103011 3103380 -173870760 + MLT1B LTR MaLR 3 390 0 343 333 5 22 chrX 3103425 3103550 -173870590 - MIR SINE MIR -66 142 21 2060 132 19 29 chrX 3103995 3104374 -173869766 + THE1C LTR MaLR 1 375 0 2922 187 10 84 chrX 3104795 3105187 -173868953 - L1MA7 LINE L1 -9 6282 5979 1954 160 0 3 chrX 3105187 3105499 -173868641 - AluJo SINE Alu -1 311 1 2922 187 10 84 chrX 3105499 3105912 -173868228 - L1MA7 LINE L1 -312 5979 5537 213 108 0 0 chrX 3105915 3105952 -173868188 + (CCA)n Simple_repeat Simple_repeat 1 37 0 758 164 0 0 chrX 3106768 3106890 -173867250 + AluJb SINE Alu 4 125 -187 717 163 12 6 chrX 3107523 3107683 -173866457 + GA-rich Low_complexity Low_complexity 4 164 0 226 277 15 0 chrX 3107710 3107775 -173866365 + (TA)n Simple_repeat Simple_repeat 1 66 0 454 111 14 0 chrX 3107907 3107979 -173866161 - MADE1 DNA Mariner -5 75 3 232 120 40 0 chrX 3108011 3108061 -173866079 + (TA)n Simple_repeat Simple_repeat 2 53 0 577 208 100 0 chrX 3109168 3109288 -173864852 - FLAM_A SINE Alu 0 133 2 2050 123 0 4 chrX 3110126 3110410 -173863730 + AluSx SINE Alu 1 283 -29 262 0 0 0 chrX 3110410 3110439 -173863701 + (CAAAA)n Simple_repeat Simple_repeat 2 125 0 3852 104 15 74 chrX 3110439 3111008 -173863132 + L1PA13 LINE L1 5524 6048 -115 2570 40 0 0 chrX 3111008 3111304 -173862836 + AluY SINE Alu 1 296 -15 3852 104 15 74 chrX 3111304 3111409 -173862731 + L1PA13 LINE L1 6048 6158 -5 268 253 82 55 chrX 3111665 3111811 -173862329 + MLT1J LTR MaLR 102 251 -260 313 253 11 22 chrX 3113093 3113184 -173860956 - L1MC4 LINE L1 -1339 6703 6614 415 191 0 35 chrX 3113246 3113361 -173860779 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 180 176 0 0 chrX 3113389 3113423 -173860717 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 273 265 102 48 chrX 3114005 3114171 -173859969 + HAL1 LINE L1 5 179 -2328 408 205 33 33 chrX 3114412 3114534 -173859606 - L1MA4A LINE L1 -181 6122 6001 360 321 131 30 chrX 3114790 3115027 -173859113 + HAL1 LINE L1 637 897 -1610 693 285 56 3 chrX 3115075 3115359 -173858781 + Charlie1b DNA MER1_type 56 354 -169 2689 80 17 8 chrX 3115568 3115929 -173858211 - THE1B LTR MaLR 0 364 1 232 253 127 0 chrX 3116062 3116141 -173857999 + L1ME4a LINE L1 5937 6025 -96 752 160 35 7 chrX 3116824 3116968 -173857172 - Tigger3b DNA MER2_type -808 423 276 507 223 0 29 chrX 3116970 3117073 -173857067 - Tigger3b DNA MER2_type -1131 100 1 324 194 19 29 chrX 3117293 3117396 -173856744 + (TA)n Simple_repeat Simple_repeat 1 102 0 249 231 0 23 chrX 3117407 3117537 -173856603 + (TA)n Simple_repeat Simple_repeat 2 128 0 751 166 24 11 chrX 3117538 3117798 -173856342 + (TCTA)n Simple_repeat Simple_repeat 1 263 0 491 321 121 25 chrX 3118883 3119247 -173854893 + LTR16A1 LTR ERVL 49 447 -10 1782 168 0 32 chrX 3120824 3121133 -173853007 - AluJb SINE Alu -13 299 1 871 146 0 7 chrX 3121499 3121643 -173852497 + FLAM_C SINE Alu 1 143 0 40 67 0 0 chrX 3122120 3122195 -173851945 + AT_rich Low_complexity Low_complexity 1 75 0 1741 166 0 3 chrX 3123521 3123864 -173850276 - AluSx SINE Alu 0 342 1 956 120 0 0 chrX 3123864 3123997 -173850143 - AluSq/x SINE Alu -178 135 3 393 118 59 0 chrX 3124725 3124793 -173849347 + L1P5 LINE L1 5708 5779 -377 1452 186 14 25 chrX 3126444 3126729 -173847411 - AluJo SINE Alu -30 282 1 552 126 35 14 chrX 3127083 3127226 -173846914 + (TCTA)n Simple_repeat Simple_repeat 1 146 0 247 234 24 6 chrX 3127236 3127403 -173846737 + (TA)n Simple_repeat Simple_repeat 2 171 0 243 294 138 56 chrX 3127495 3127726 -173846414 - MIR SINE MIR -2 260 11 21 0 0 0 chrX 3128011 3128032 -173846108 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chrX 3129085 3129114 -173845026 + (GA)n Simple_repeat Simple_repeat 1 29 0 781 292 70 107 chrX 3129505 3129888 -173844252 + L1ME1 LINE L1 62 413 -5983 2607 97 8 3 chrX 3129888 3130249 -173843891 - THE1B LTR MaLR -1 363 1 781 292 70 107 chrX 3130249 3130509 -173843631 + L1ME1 LINE L1 413 681 -5715 1998 103 33 0 chrX 3130536 3130809 -173843331 - AluSx SINE Alu -30 282 1 410 255 0 0 chrX 3130839 3130941 -173843199 + L1ME1 LINE L1 693 794 -5602 2001 253 69 35 chrX 3131017 3131531 -173842609 + L1ME1 LINE L1 4357 4852 -1383 369 0 0 0 chrX 3131531 3131572 -173842568 + (CA)n Simple_repeat Simple_repeat 2 42 0 2001 253 69 35 chrX 3131572 3132329 -173841811 + L1ME1 LINE L1 4852 5673 -562 * 5437 70 28 8 chrX 3132326 3133080 -173841060 - L1P LINE L1 -2023 4123 3355 * 6019 95 3 9 chrX 3133079 3133963 -173840177 - L1P LINE L1 -3016 3130 2252 9052 73 7 0 chrX 3133963 3135978 -173838162 + L1PA7 LINE L1 4115 6152 -2 1005 268 26 60 chrX 3135978 3136479 -173837661 + L1ME1 LINE L1 5664 6147 -88 395 229 46 78 chrX 3136410 3136563 -173837577 + L1MA10 LINE L1 6240 6387 -16 * 21 57 0 0 chrX 3136709 3136744 -173837396 + AT_rich Low_complexity Low_complexity 1 35 0 4419 126 18 18 chrX 3137963 3138685 -173835455 + L1PA16 LINE L1 5444 6165 -1 2514 99 0 50 chrX 3139454 3139837 -173834303 - THE1B LTR MaLR 0 364 1 1235 76 6 0 chrX 3140304 3140475 -173833665 - L1PA5 LINE L1 -1 6153 5982 216 0 0 0 chrX 3140787 3140811 -173833329 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chrX 3141870 3141892 -173832248 + AT_rich Low_complexity Low_complexity 1 22 0 297 183 0 0 chrX 3142185 3142245 -173831895 + GA-rich Low_complexity Low_complexity 1 60 0 1962 153 0 7 chrX 3142291 3142599 -173831541 + AluJb SINE Alu 1 306 -6 1704 163 3 7 chrX 3143035 3143318 -173830822 - AluJo SINE Alu -19 293 12 894 218 35 0 chrX 3144258 3144460 -173829680 + MER3 DNA MER1_type 1 209 0 408 277 168 7 chrX 3144480 3144617 -173829523 + MER5A DNA MER1_type 30 188 -1 2274 107 0 3 chrX 3145589 3145915 -173828225 + AluSx SINE Alu 12 336 0 1169 217 19 139 chrX 3146226 3146516 -173827624 - MLT1C LTR MaLR -42 425 214 4656 112 6 17 chrX 3146516 3147215 -173826925 - LTR8 LTR ERV1 0 691 1 1169 217 19 139 chrX 3147215 3147407 -173826733 - MLT1C LTR MaLR -253 214 1 24 53 0 0 chrX 3149684 3149722 -173824418 + AT_rich Low_complexity Low_complexity 1 38 0 1999 178 72 2 chrX 3149785 3150185 -173823955 - MSTA LTR MaLR 0 428 1 1017 110 0 7 chrX 3150185 3150340 -173823800 - MSTA-int LTR MaLR 0 1651 1498 374 364 78 33 chrX 3150387 3150903 -173823237 - ERVL LTR ERVL -648 5116 4578 2567 217 19 15 chrX 3151330 3151856 -173822284 + MER74A LTR ERVL 31 558 0 1765 166 3 14 chrX 3151951 3152246 -173821894 + AluJb SINE Alu 1 292 -20 1882 133 0 11 chrX 3152497 3152775 -173821365 + AluSx SINE Alu 1 275 -37 2239 149 31 24 chrX 3153461 3153844 -173820296 + LTR26 LTR ERV1 218 603 0 285 140 0 0 chrX 3154242 3154299 -173819841 + (TC)n Simple_repeat Simple_repeat 2 58 0 285 29 0 0 chrX 3154299 3154333 -173819807 + (CA)n Simple_repeat Simple_repeat 1 34 0 264 59 0 0 chrX 3154333 3154367 -173819773 + (GA)n Simple_repeat Simple_repeat 1 34 0 25 51 0 0 chrX 3155476 3155515 -173818625 + AT_rich Low_complexity Low_complexity 1 39 0 240 242 0 0 chrX 3156166 3156228 -173817912 - L1M4 LINE L1 -2393 3753 3692 1352 6 17 17 chrX 3156232 3156410 -173817730 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1848 155 10 3 chrX 3156425 3156716 -173817424 - AluJb SINE Alu -19 293 1 422 310 7 35 chrX 3156864 3157006 -173817134 - MIR SINE MIR -89 173 36 299 293 0 57 chrX 3157401 3157524 -173816616 + L2 LINE L2 1799 1914 -1400 1412 139 9 0 chrX 3157573 3157803 -173816337 - MLT1B LTR MaLR 0 390 159 2087 172 6 10 chrX 3157804 3158194 -173815946 - MLT1B LTR MaLR 0 396 4 4179 74 26 0 chrX 3158227 3158792 -173815348 + LTR19B LTR ERV1 1 580 0 183 328 52 43 chrX 3158823 3158939 -173815201 - L2 LINE L2 -18 3254 3138 1807 153 45 29 chrX 3159111 3159238 -173814902 + L1MB3 LINE L1 5796 5919 -264 2357 194 31 82 chrX 3159238 3159883 -173814257 - LTR9 LTR ERV1 0 612 1 1807 153 45 29 chrX 3159883 3160133 -173814007 + L1MB3 LINE L1 5919 6179 -4 186 71 0 0 chrX 3160174 3160202 -173813938 + (CAA)n Simple_repeat Simple_repeat 3 30 0 231 324 59 0 chrX 3161423 3161491 -173812649 + MIR SINE MIR 24 95 -167 1503 134 20 24 chrX 3162093 3162339 -173811801 + AluJb SINE Alu 36 280 -32 689 221 0 6 chrX 3162344 3162516 -173811624 + GA-rich Low_complexity Low_complexity 1 171 0 261 0 0 0 chrX 3162517 3162546 -173811594 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 186 344 74 25 chrX 3163015 3163178 -173810962 + MIR3 SINE MIR 37 207 -1 239 283 33 22 chrX 3163999 3164091 -173810049 - MIR SINE MIR -122 140 48 1449 194 4 0 chrX 3164800 3165047 -173809093 + AluJo SINE Alu 39 286 -26 438 140 30 0 chrX 3165084 3165184 -173808956 + (TA)n Simple_repeat Simple_repeat 1 103 0 390 159 0 0 chrX 3165209 3165278 -173808862 + (TG)n Simple_repeat Simple_repeat 2 70 0 414 0 0 0 chrX 3165407 3165453 -173808687 + (TA)n Simple_repeat Simple_repeat 2 47 0 519 209 6 12 chrX 3166249 3166412 -173807728 + CT-rich Low_complexity Low_complexity 1 162 0 269 185 0 12 chrX 3166427 3166508 -173807632 + CT-rich Low_complexity Low_complexity 2 81 0 680 75 0 0 chrX 3168007 3168101 -173806039 - AluY SINE Alu -13 298 205 243 174 76 65 chrX 3168809 3168901 -173805239 + L1M4 LINE L1 3375 3467 -2679 333 222 42 14 chrX 3169362 3169506 -173804634 + (TA)n Simple_repeat Simple_repeat 2 149 0 283 220 71 64 chrX 3169569 3169710 -173804430 + L1M4 LINE L1 4123 4264 -1882 24 32 0 0 chrX 3169745 3169776 -173804364 + AT_rich Low_complexity Low_complexity 1 31 0 2059 145 0 0 chrX 3169925 3170229 -173803911 + AluSx SINE Alu 1 304 -8 727 153 0 0 chrX 3170450 3170568 -173803572 - FLAM_C SINE Alu -15 118 1 353 290 85 82 chrX 3170779 3171179 -173802961 + L1MB3 LINE L1 4010 4410 -1736 335 167 103 0 chrX 3171221 3171299 -173802841 + L1MB3 LINE L1 4502 4587 -1559 387 125 0 0 chrX 3171302 3171374 -173802766 + (TG)n Simple_repeat Simple_repeat 2 73 0 1813 177 57 0 chrX 3171592 3171981 -173802159 + L1MB3 LINE L1 5770 6180 -3 1064 98 6 0 chrX 3172431 3172595 -173801545 + (GGAA)n Simple_repeat Simple_repeat 3 167 0 33 0 0 0 chrX 3172688 3172721 -173801419 + AT_rich Low_complexity Low_complexity 1 33 0 406 185 39 0 chrX 3173473 3173603 -173800537 + CT-rich Low_complexity Low_complexity 1 135 0 21 0 0 0 chrX 3174017 3174038 -173800102 + AT_rich Low_complexity Low_complexity 1 21 0 1135 183 0 29 chrX 3174038 3174246 -173799894 - AluJo SINE Alu -24 288 87 22 0 0 0 chrX 3174342 3174364 -173799776 + AT_rich Low_complexity Low_complexity 1 22 0 227 31 31 0 chrX 3174448 3174480 -173799660 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 204 250 0 0 chrX 3174676 3174720 -173799420 - MIR SINE MIR 0 262 219 606 182 0 0 chrX 3175083 3175193 -173798947 - L1MA9 LINE L1 -33 6279 6170 1562 154 66 22 chrX 3175378 3175650 -173798490 + AluJb SINE Alu 1 284 -28 311 208 13 0 chrX 3175688 3175765 -173798375 + L1MA7 LINE L1 6210 6287 -4 37 0 0 0 chrX 3175766 3175803 -173798337 + AT_rich Low_complexity Low_complexity 1 37 0 2121 221 0 43 chrX 3176008 3176496 -173797644 + MLT1C LTR MaLR 1 467 0 2726 179 77 11 chrX 3176866 3177425 -173796715 + L1MA3 LINE L1 5545 6140 -165 2851 86 64 24 chrX 3177433 3177853 -173796287 + MLT2A1 LTR ERVL 1 437 -7 765 170 0 25 chrX 3177890 3178049 -173796091 + L1MA3 LINE L1 6151 6305 0 6602 55 2 28 chrX 3178159 3179031 -173795109 - L1PA7 LINE L1 -6 6148 5299 1788 162 18 26 chrX 3179158 3179498 -173794642 + THE1C LTR MaLR 1 337 -38 1097 143 0 0 chrX 3180311 3180500 -173793640 - L1MA3 LINE L1 -3 6302 6114 401 176 0 0 chrX 3180501 3180575 -173793565 + L1MA3 LINE L1 6037 6110 -195 24 0 0 0 chrX 3181657 3181681 -173792459 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chrX 3183049 3183090 -173791050 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chrX 3183355 3183376 -173790764 + AT_rich Low_complexity Low_complexity 1 21 0 256 24 24 24 chrX 3183436 3183478 -173790662 + (TTTTTA)n Simple_repeat Simple_repeat 1 42 0 14239 25 3 0 chrX 3183478 3185929 -173788211 - L1PA3 LINE L1 -2 6153 3697 8472 31 0 1 chrX 3185930 3186973 -173787167 + L1PA3 LINE L1 2650 3691 -2455 262 284 0 0 chrX 3187821 3187916 -173786224 - L1MB8 LINE L1 -2 6176 6082 1098 242 100 24 chrX 3191522 3191955 -173782185 - MLT1C LTR MaLR 0 467 1 310 363 67 9 chrX 3191955 3192178 -173781962 + L1MC5 LINE L1 7666 7901 -60 21 0 0 0 chrX 3192206 3192227 -173781913 + AT_rich Low_complexity Low_complexity 1 21 0 601 153 19 10 chrX 3192229 3192328 -173781812 - L1MA7 LINE L1 -497 5806 5705 2682 136 20 36 chrX 3192328 3192826 -173781314 + L1MA7 LINE L1 5800 6290 -1 601 153 19 10 chrX 3192826 3192842 -173781298 - L1MB8 LINE L1 -598 5705 5691 306 0 0 0 chrX 3192952 3192986 -173781154 + (CA)n Simple_repeat Simple_repeat 2 35 0 621 229 10 47 chrX 3192994 3193186 -173780954 + L1MB5 LINE L1 5980 6164 -10 24 0 0 0 chrX 3193467 3193491 -173780649 + AT_rich Low_complexity Low_complexity 1 24 0 3759 90 14 31 chrX 3193491 3194080 -173780060 - L1MA1 LINE L1 -3 6299 5721 1006 87 67 0 chrX 3194090 3194239 -173779901 - L1MA1 LINE L1 -696 5606 5448 1816 152 16 70 chrX 3194558 3194932 -173779208 - MLT1A1 LTR MaLR 0 365 12 910 229 161 0 chrX 3194939 3195219 -173778921 + MLT1D LTR MaLR 181 505 0 333 323 123 13 chrX 3195954 3196109 -173778031 - MIR SINE MIR -88 174 3 2254 120 22 27 chrX 3196151 3196517 -173777623 - THE1B LTR MaLR 0 364 1 2178 117 10 67 chrX 3196888 3197274 -173776866 + THE1B LTR MaLR 1 364 0 246 62 0 0 chrX 3197392 3197424 -173776716 + (CA)n Simple_repeat Simple_repeat 1 32 0 1517 197 55 0 chrX 3197805 3198094 -173776046 + AluJb SINE Alu 1 305 -7 315 313 172 0 chrX 3198126 3198260 -173775880 - MER5A DNA MER1_type -1 188 32 1361 228 81 29 chrX 3198261 3198705 -173775435 + MLT1C LTR MaLR 1 467 0 1793 219 77 11 chrX 3199860 3200142 -173773998 + MLT1D LTR MaLR 22 309 -158 234 0 0 0 chrX 3200142 3200168 -173773972 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1793 219 77 11 chrX 3200168 3200339 -173773801 + MLT1D LTR MaLR 309 467 0 26 30 0 0 chrX 3201619 3201652 -173772488 + AT_rich Low_complexity Low_complexity 1 33 0 257 237 31 10 chrX 3201699 3201796 -173772344 + (TA)n Simple_repeat Simple_repeat 2 100 0 401 240 91 32 chrX 3201899 3202053 -173772087 - MIR SINE MIR -71 191 29 286 301 65 32 chrX 3202099 3202167 -173771973 + MER5A DNA MER1_type 63 138 -51 2160 55 0 0 chrX 3202167 3202439 -173771701 - L1PA6 LINE L1 -8 6146 5875 286 301 65 32 chrX 3202439 3202493 -173771647 + MER5A DNA MER1_type 138 189 0 1052 234 76 45 chrX 3202848 3203245 -173770895 - MLT1C LTR MaLR 0 467 59 239 95 48 0 chrX 3203254 3203296 -173770844 + (TATG)n Simple_repeat Simple_repeat 2 45 0 637 308 39 4 chrX 3204986 3205220 -173768920 + MIR SINE MIR 18 259 -3 219 215 0 31 chrX 3205517 3205544 -173768596 + (TA)n Simple_repeat Simple_repeat 2 28 -36 2235 85 10 14 chrX 3205544 3205675 -173768465 + AluSx SINE Alu 3 133 -179 2532 57 0 0 chrX 3205675 3205976 -173768164 + AluY SINE Alu 1 301 -10 2235 85 10 14 chrX 3205976 3206138 -173768002 + AluSx SINE Alu 133 295 -17 219 215 0 31 chrX 3206138 3206175 -173767965 + (TA)n Simple_repeat Simple_repeat 28 64 0 24 0 0 0 chrX 3206277 3206301 -173767839 + AT_rich Low_complexity Low_complexity 1 24 0 1974 167 12 6 chrX 3207128 3207469 -173766671 - MER61A LTR ERV1 0 343 1 517 215 35 7 chrX 3207911 3208063 -173766077 - MER58B DNA MER1_type -25 316 33 1121 189 0 32 chrX 3209018 3209235 -173764905 + AluJo SINE Alu 1 210 -102 414 171 98 0 chrX 3209263 3209345 -173764795 + AluJo SINE Alu 192 281 -31 1313 66 0 11 chrX 3209352 3209534 -173764606 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 231 36 0 0 chrX 3209534 3209562 -173764578 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 1082 126 0 11 chrX 3209564 3209746 -173764394 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1837 153 10 7 chrX 3209751 3210051 -173764089 + AluSx SINE Alu 1 301 -11 1371 236 159 14 chrX 3210356 3210797 -173763343 + MLT1D LTR MaLR 1 505 0 270 216 0 0 chrX 3211137 3211153 -173762987 + AluSp SINE Alu 120 135 -168 1565 187 32 7 chrX 3211153 3211436 -173762704 + AluJo SINE Alu 1 290 -22 28 29 0 0 chrX 3211436 3211471 -173762669 + AT_rich Low_complexity Low_complexity 1 35 0 1334 238 116 7 chrX 3211720 3212153 -173761987 + MLT2B1 LTR ERVL 1 480 -40 2016 146 0 10 chrX 3212210 3212511 -173761629 + AluSx SINE Alu 1 298 -14 1082 248 75 9 chrX 3212517 3212839 -173761301 - MER2 DNA MER2_type 0 344 2 306 253 6 22 chrX 3213006 3213188 -173760952 + (TA)n Simple_repeat Simple_repeat 2 180 0 200 318 0 0 chrX 3213191 3213257 -173760883 + (CATA)n Simple_repeat Simple_repeat 1 66 0 321 26 0 0 chrX 3213257 3213295 -173760845 + (TG)n Simple_repeat Simple_repeat 1 38 0 1263 39 0 6 chrX 3213763 3213919 -173760221 - L1PA4 LINE L1 -8 6147 5993 692 194 61 0 chrX 3214709 3214874 -173759266 - MER53 DNA DNA -3 186 12 675 240 23 73 chrX 3215156 3215255 -173758885 - L1M4 LINE L1 -2659 3487 3385 3727 126 0 13 chrX 3215255 3215789 -173758351 - MER1A DNA MER1_type 0 527 1 675 240 23 73 chrX 3215789 3216018 -173758122 - L1M4 LINE L1 -2761 3385 3174 23 33 0 0 chrX 3216319 3216349 -173757791 + AT_rich Low_complexity Low_complexity 1 30 0 3738 152 3 0 chrX 3216375 3216979 -173757161 + L1PA15 LINE L1 5560 6165 0 978 132 0 0 chrX 3217237 3217421 -173756719 + L1PB3 LINE L1 6006 6189 0 4292 138 25 4 chrX 3219118 3219848 -173754292 + L1MA4A LINE L1 5555 6299 -4 2457 88 70 3 chrX 3220394 3220735 -173753405 - THE1B LTR MaLR 0 364 1 358 250 0 0 chrX 3222384 3222464 -173751676 + MLT1E1 LTR MaLR 51 130 -463 965 248 37 25 chrX 3222591 3222887 -173751253 + MLT1E1 LTR MaLR 288 654 0 21 0 0 0 chrX 3223128 3223149 -173750991 + AT_rich Low_complexity Low_complexity 1 21 0 1151 102 11 0 chrX 3223447 3223623 -173750517 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 440 190 0 10 chrX 3223628 3223728 -173750412 + GA-rich Low_complexity Low_complexity 4 102 0 1773 153 52 0 chrX 3223803 3224091 -173750049 + AluSx SINE Alu 3 305 -7 22 0 0 0 chrX 3224263 3224285 -173749855 + AT_rich Low_complexity Low_complexity 1 22 0 1672 194 75 75 chrX 3224349 3224869 -173749271 + MLT2B1 LTR ERVL 1 520 0 1159 257 39 41 chrX 3225219 3225557 -173748583 - MLT1G LTR MaLR -11 579 243 308 328 60 40 chrX 3225817 3226018 -173748122 - L1M4c LINE L1 -4735 1649 1445 23 0 0 0 chrX 3226321 3226344 -173747796 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chrX 3227155 3227199 -173746941 + AT_rich Low_complexity Low_complexity 1 44 0 2760 88 0 11 chrX 3227822 3228199 -173745941 - THE1C LTR MaLR 0 375 3 282 289 0 7 chrX 3228256 3228395 -173745745 + CT-rich Low_complexity Low_complexity 1 137 0 * 934 137 6 6 chrX 3228389 3228564 -173745576 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 2202 110 0 3 chrX 3228963 3229273 -173744867 - AluSq SINE Alu -4 309 1 30 0 0 0 chrX 3229655 3229685 -173744455 + AT_rich Low_complexity Low_complexity 1 30 0 2434 161 5 31 chrX 3230906 3231352 -173742788 + Tigger2a DNA MER2_type 1 434 0 2481 101 28 6 chrX 3231761 3232117 -173742023 - THE1B LTR MaLR 0 364 1 193 392 13 0 chrX 3232178 3232257 -173741883 - L2 LINE L2 -27 3286 3207 203 175 0 0 chrX 3232645 3232685 -173741455 + T-rich Low_complexity Low_complexity 1 40 0 1832 246 109 42 chrX 3232996 3233359 -173740781 + L1MC/D LINE L1 1174 1511 -4915 3374 81 0 62 chrX 3233359 3233503 -173740637 + L1PB1 LINE L1 5665 5816 -335 183 42 0 0 chrX 3233503 3233527 -173740613 + (CA)n Simple_repeat Simple_repeat 2 25 0 3374 81 0 62 chrX 3233527 3233899 -173740241 + L1PB1 LINE L1 5816 6149 -2 1832 246 109 42 chrX 3233899 3233923 -173740217 + L1MC/D LINE L1 1511 1532 -4894 1638 133 4 0 chrX 3233923 3234156 -173739984 + AluSq SINE Alu 1 234 -79 1832 246 109 42 chrX 3234156 3234247 -173739893 + L1MC/D LINE L1 1532 1615 -4811 12334 24 0 0 chrX 3234247 3236465 -173737675 + L1PA3 LINE L1 3935 6152 -3 1832 246 109 42 chrX 3236465 3237080 -173737060 + L1MC/D LINE L1 1615 2343 -4083 1778 281 42 81 chrX 3237096 3237475 -173736665 + L1MC/D LINE L1 4070 4462 -1964 2408 53 0 0 chrX 3237475 3237781 -173736359 + AluY SINE Alu 1 306 0 1778 281 42 81 chrX 3237781 3238743 -173735397 + L1MC/D LINE L1 4462 5360 -1066 253 62 62 21 chrX 3238874 3238922 -173735218 - L1MD3 LINE L1 -1165 6830 6781 338 252 0 44 chrX 3238970 3239105 -173735035 - L1M4 LINE L1 -1819 4327 4199 189 195 0 0 chrX 3239123 3239164 -173734976 + (CATA)n Simple_repeat Simple_repeat 4 44 0 227 132 0 0 chrX 3239169 3239207 -173734933 - L1MA9 LINE L1 -82 6230 6193 1837 203 45 25 chrX 3239211 3239793 -173734347 + L1MC/D LINE L1 5386 5983 -743 2543 162 7 4 chrX 3240740 3241196 -173732944 + L1PA16 LINE L1 5710 6166 0 225 183 33 33 chrX 3241794 3241854 -173732286 + GA-rich Low_complexity Low_complexity 4 63 0 252 86 0 0 chrX 3241940 3241975 -173732165 + (T)n Simple_repeat Simple_repeat 1 35 0 1845 74 4 0 chrX 3241986 3242215 -173731925 - AluSp SINE Alu -83 230 1 38 75 0 0 chrX 3242497 3242577 -173731563 + AT_rich Low_complexity Low_complexity 1 80 0 352 222 35 23 chrX 3242582 3242753 -173731387 + (TA)n Simple_repeat Simple_repeat 1 173 0 242 214 38 10 chrX 3242821 3243118 -173731022 + (TA)n Simple_repeat Simple_repeat 1 305 0 330 153 0 0 chrX 3244869 3244928 -173729212 + GA-rich Low_complexity Low_complexity 2 60 0 613 285 29 37 chrX 3244953 3245195 -173728945 - LTR16A1 LTR ERVL 0 457 218 369 263 60 8 chrX 3245334 3245467 -173728673 - LTR16A1 LTR ERVL -100 357 218 477 151 0 0 chrX 3245467 3245553 -173728587 + GA-rich Low_complexity Low_complexity 2 87 0 421 194 68 29 chrX 3245638 3245723 -173728417 + MER20 DNA MER1_type 7 95 -124 1975 149 26 29 chrX 3245723 3246106 -173728034 - LTR8 LTR ERV1 0 691 310 1584 181 6 40 chrX 3246175 3246501 -173727639 - LTR8 LTR ERV1 -376 315 1 462 250 17 8 chrX 3246501 3246621 -173727519 + MER20 DNA MER1_type 95 215 -4 325 316 0 34 chrX 3246635 3246752 -173727388 - LTR16A1 LTR ERVL -342 115 3 6345 47 0 0 chrX 3246828 3247601 -173726539 - L1PA5 LINE L1 0 6154 5382 1808 144 115 11 chrX 3247637 3248042 -173726098 - MER84 LTR ERVI -2 505 1 22 0 0 0 chrX 3248262 3248284 -173725856 + AT_rich Low_complexity Low_complexity 1 22 0 1512 205 98 8 chrX 3249091 3249447 -173724693 + MLT2C1 LTR ERVL 8 395 -2 211 200 16 54 chrX 3249746 3249931 -173724209 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 231 258 0 15 chrX 3249938 3250004 -173724136 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 568 58 58 29 chrX 3250007 3250146 -173723994 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 244 287 149 35 chrX 3250511 3250685 -173723455 - L1MC/D LINE L1 -2172 5636 5443 1914 180 20 9 chrX 3250837 3251181 -173722959 + MER7A DNA MER2_type 1 346 0 351 0 0 0 chrX 3251373 3251412 -173722728 + (TG)n Simple_repeat Simple_repeat 1 39 0 231 61 0 0 chrX 3251412 3251445 -173722695 + (GA)n Simple_repeat Simple_repeat 2 34 0 378 319 70 75 chrX 3251652 3252264 -173721876 - HAL1 LINE L1 -1051 1456 848 320 109 0 18 chrX 3252327 3252382 -173721758 + (TCC)n Simple_repeat Simple_repeat 3 56 0 237 224 0 0 chrX 3252383 3252432 -173721708 + CT-rich Low_complexity Low_complexity 2 50 0 566 135 34 14 chrX 3252525 3252673 -173721467 + CT-rich Low_complexity Low_complexity 1 151 0 189 226 36 0 chrX 3252687 3252771 -173721369 + CT-rich Low_complexity Low_complexity 6 92 0 238 257 38 87 chrX 3253977 3254160 -173719980 - MIR SINE MIR -17 245 72 1804 130 0 50 chrX 3254923 3255222 -173718918 - AluJb SINE Alu -26 286 3 506 302 14 0 chrX 3255227 3255366 -173718774 - MER5B DNA MER1_type -31 147 7 289 173 71 16 chrX 3255890 3256017 -173718123 + (TA)n Simple_repeat Simple_repeat 1 134 0 2421 193 38 24 chrX 3256049 3256583 -173717557 - L1MB4 LINE L1 -40 6140 5600 205 305 46 30 chrX 3256636 3256767 -173717373 - MIR SINE MIR -127 135 3 706 312 20 8 chrX 3257170 3257417 -173716723 + MIR SINE MIR 12 261 -1 343 237 0 0 chrX 3257588 3257664 -173716476 + MLT1F1 LTR MaLR 84 159 -408 1633 170 0 14 chrX 3257680 3257962 -173716178 - AluJo SINE Alu -9 303 26 233 239 0 41 chrX 3258396 3258464 -173715676 - MIR SINE MIR -88 120 61 2426 86 0 0 chrX 3258469 3258771 -173715369 - AluSx SINE Alu -9 303 2 314 305 26 20 chrX 3260178 3260329 -173713811 - L1MC4 LINE L1 -975 7067 6916 556 276 35 44 chrX 3260350 3260665 -173713475 + L1MC5 LINE L1 7087 7398 -563 4217 154 18 11 chrX 3260673 3261382 -173712758 + MER50 LTR ERV1 2 715 -19 292 280 6 12 chrX 3261590 3261758 -173712382 + GA-rich Low_complexity Low_complexity 3 169 0 228 310 0 0 chrX 3262318 3262376 -173711764 + MIR SINE MIR 11 68 -194 271 234 13 26 chrX 3262435 3262512 -173711628 + MIR SINE MIR 174 249 -13 391 231 12 89 chrX 3262637 3262806 -173711334 + MIR SINE MIR 94 249 -13 734 331 33 19 chrX 3263155 3263548 -173710592 - LTR16A LTR ERVL 0 457 52 25 0 0 0 chrX 3264027 3264052 -173710088 + AT_rich Low_complexity Low_complexity 1 25 0 836 178 51 47 chrX 3264198 3264412 -173709728 + AluJo SINE Alu 85 299 -13 228 227 13 53 chrX 3264457 3264532 -173709608 - L1ME4a LINE L1 -100 6021 5950 22 0 0 0 chrX 3264539 3264561 -173709579 + AT_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chrX 3265343 3265378 -173708762 + (CA)n Simple_repeat Simple_repeat 2 36 0 215 149 0 21 chrX 3266591 3266638 -173707502 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 335 233 0 7 chrX 3266679 3266825 -173707315 + (TA)n Simple_repeat Simple_repeat 1 145 0 276 30 0 0 chrX 3266825 3266858 -173707282 + (GA)n Simple_repeat Simple_repeat 2 34 0 217 338 0 0 chrX 3267573 3267641 -173706499 + MIR3 SINE MIR 113 180 -28 192 77 0 0 chrX 3270995 3271021 -173703119 + (TG)n Simple_repeat Simple_repeat 2 27 0 1485 176 10 60 chrX 3271021 3271322 -173702818 - AluJo SINE Alu -26 286 1 333 309 19 37 chrX 3271871 3272033 -173702107 + MER3 DNA MER1_type 17 128 -81 221 318 0 0 chrX 3272059 3272125 -173702015 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 206 336 10 0 chrX 3273337 3273441 -173700699 + (TA)n Simple_repeat Simple_repeat 1 105 0 207 0 0 0 chrX 3273441 3273464 -173700676 + (CA)n Simple_repeat Simple_repeat 2 24 0 1620 191 19 3 chrX 3273472 3273786 -173700354 - MER2 DNA MER2_type -25 320 2 304 141 18 61 chrX 3273791 3273954 -173700186 + (TA)n Simple_repeat Simple_repeat 1 156 0 193 130 15 84 chrX 3273972 3274103 -173700037 + (TA)n Simple_repeat Simple_repeat 1 122 0 312 243 23 34 chrX 3274122 3274143 -173699997 + (TA)n Simple_repeat Simple_repeat 1 21 -154 1799 144 3 89 chrX 3274143 3274469 -173699671 + AluSx SINE Alu 1 298 -14 312 243 23 34 chrX 3274469 3274624 -173699516 + (TA)n Simple_repeat Simple_repeat 21 175 0 282 224 0 0 chrX 3274713 3274771 -173699369 + L1MCc LINE L1 -540 4294966813 -6347 276 348 105 20 chrX 3275495 3275846 -173698294 + L1MCc LINE L1 597 977 -4887 41 48 0 0 chrX 3275857 3275919 -173698221 + AT_rich Low_complexity Low_complexity 1 62 0 263 299 82 42 chrX 3276028 3276456 -173697684 + L1MCc LINE L1 1249 1748 -4815 479 261 144 39 chrX 3276490 3276823 -173697317 + L1MCc LINE L1 2696 3063 -3319 225 300 0 12 chrX 3276879 3276959 -173697181 + GA-rich Low_complexity Low_complexity 1 79 0 27 29 0 0 chrX 3276962 3276996 -173697144 + AT_rich Low_complexity Low_complexity 1 34 0 886 249 75 34 chrX 3277055 3277532 -173696608 + L1ME3 LINE L1 5665 6161 -1 349 101 62 23 chrX 3278195 3278324 -173695816 + (TA)n Simple_repeat Simple_repeat 1 134 0 800 274 19 63 chrX 3279518 3279897 -173694243 - L1ME2 LINE L1 -11 6153 5792 2342 75 6 25 chrX 3280029 3280347 -173693793 - AluSx SINE Alu 0 312 1 1866 109 60 0 chrX 3281349 3281661 -173692479 - AluSx SINE Alu 0 328 1 195 222 0 0 chrX 3282137 3282182 -173691958 + (CA)n Simple_repeat Simple_repeat 2 46 0 29 0 0 0 chrX 3282243 3282272 -173691868 + AT_rich Low_complexity Low_complexity 1 29 0 2333 98 131 6 chrX 3282565 3282931 -173691209 + MSTA LTR MaLR 14 425 -3 333 221 168 44 chrX 3282978 3283091 -173691049 - MER58A DNA MER1_type 0 156 30 227 250 0 0 chrX 3283899 3283955 -173690185 + (TG)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chrX 3284434 3284458 -173689682 + AT_rich Low_complexity Low_complexity 1 24 0 1090 262 62 59 chrX 3284745 3285233 -173688907 + MLT1D LTR MaLR 16 504 -1 1977 142 0 34 chrX 3286092 3286415 -173687725 + AluJb SINE Alu 1 312 0 801 103 135 70 chrX 3286478 3286634 -173687506 - L1MC1 LINE L1 0 6333 6168 240 203 203 0 chrX 3286703 3286767 -173687373 - LTR16B LTR ERVL 0 464 388 215 329 0 0 chrX 3286841 3286920 -173687220 + T-rich Low_complexity Low_complexity 4 82 0 2096 151 30 30 chrX 3286935 3287299 -173686841 - THE1B LTR MaLR 0 364 1 1068 133 0 0 chrX 3287338 3287518 -173686622 + (CAT)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chrX 3287530 3287554 -173686586 + (CACCAT)n Simple_repeat Simple_repeat 1 24 0 1734 173 119 61 chrX 3287997 3288407 -173685733 - Tigger2a DNA MER2_type 0 434 1 1279 121 0 0 chrX 3289226 3289399 -173684741 + AluSx SINE Alu 1 173 -139 481 143 11 55 chrX 3289400 3289491 -173684649 + MSTA LTR MaLR 342 428 0 1060 164 180 16 chrX 3289518 3289762 -173684378 - MSTA LTR MaLR -134 294 11 2110 127 0 7 chrX 3290250 3290549 -173683591 - AluSx SINE Alu -15 297 1 1449 81 0 0 chrX 3290575 3290761 -173683379 - L1P LINE L1 -1989 4157 3972 274 265 70 114 chrX 3290903 3291175 -173682965 - MLT1J LTR MaLR -23 488 229 3303 233 31 17 chrX 3291489 3292369 -173681771 - L1MB7 LINE L1 -5 6179 5288 198 258 79 45 chrX 3292750 3292839 -173681301 - L3b LINE CR1 -216 1367 1276 758 233 48 37 chrX 3293791 3293980 -173680160 - MLT1E LTR MaLR -32 561 371 207 311 67 11 chrX 3294263 3294353 -173679787 + L2 LINE L2 2947 3041 -231 1737 146 26 0 chrX 3294471 3294738 -173679402 - AluSx SINE Alu -38 274 1 5476 98 24 17 chrX 3295087 3295747 -173678393 + L1PB1 LINE L1 5299 5968 -183 1978 149 0 7 chrX 3295747 3296048 -173678092 + AluSx SINE Alu 7 305 -7 5476 98 24 17 chrX 3296048 3296227 -173677913 + L1PB1 LINE L1 5968 6144 -7 21 36 0 0 chrX 3296546 3296574 -173677566 + AT_rich Low_complexity Low_complexity 1 28 0 199 146 36 0 chrX 3296975 3297030 -173677110 + T-rich Low_complexity Low_complexity 3 59 0 21 0 0 0 chrX 3297135 3297156 -173676984 + AT_rich Low_complexity Low_complexity 1 21 0 201 286 75 60 chrX 3297160 3297293 -173676847 - MIR SINE MIR -96 166 32 597 99 0 62 chrX 3297957 3298149 -173675991 + (TA)n Simple_repeat Simple_repeat 1 180 0 1693 160 10 10 chrX 3298417 3298724 -173675416 + L1MA8 LINE L1 5750 6056 -235 511 203 8 8 chrX 3298724 3298853 -173675287 + L1MA7 LINE L1 6159 6291 0 557 146 10 10 chrX 3298854 3298957 -173675183 + L1MC3 LINE L1 7682 7784 -1 227 200 50 50 chrX 3299162 3299242 -173674898 + (TATATG)n Simple_repeat Simple_repeat 6 85 0 183 184 0 0 chrX 3299247 3299285 -173674855 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chrX 3300226 3300251 -173673889 + AT_rich Low_complexity Low_complexity 1 25 0 203 291 0 0 chrX 3302241 3302296 -173671844 + (TTA)n Simple_repeat Simple_repeat 2 56 0 2067 147 0 3 chrX 3302367 3302679 -173671461 + AluSx SINE Alu 1 311 -1 445 272 80 0 chrX 3304914 3305039 -173669101 + MIR SINE MIR 84 218 -44 2818 222 39 47 chrX 3306052 3306281 -173667859 + L1MB8 LINE L1 4590 4819 -1359 2472 151 25 23 chrX 3306281 3306713 -173667427 - Tigger2a DNA MER2_type 0 434 2 2818 222 39 47 chrX 3306713 3307351 -173666789 + L1MB8 LINE L1 4819 5428 -750 1846 163 20 0 chrX 3307351 3307645 -173666495 + AluSx SINE Alu 1 300 -12 2818 222 39 47 chrX 3307645 3308186 -173665954 + L1MB8 LINE L1 5428 5972 -206 2183 168 28 30 chrX 3308477 3308983 -173665157 + L1MA8 LINE L1 5780 6284 -7 916 174 54 0 chrX 3309079 3309228 -173664912 - AluJo SINE Alu -27 285 129 723 104 0 0 chrX 3309247 3309353 -173664787 + (TC)n Simple_repeat Simple_repeat 1 106 0 788 173 0 0 chrX 3309353 3309486 -173664654 - AluJo SINE Alu -169 133 1 1827 116 77 116 chrX 3309891 3310244 -173663896 - Charlie3 DNA MER1_type 0 2712 1 443 294 68 0 chrX 3310287 3310450 -173663690 + MLT1D LTR MaLR 68 241 -264 277 321 0 0 chrX 3312116 3312197 -173661943 - MIR SINE MIR -93 169 89 1978 164 3 0 chrX 3312969 3313280 -173660860 + AluSx SINE Alu 1 312 0 334 377 45 36 chrX 3313286 3313623 -173660517 - L1MC4a LINE L1 -1903 5905 5566 2145 121 0 3 chrX 3313877 3314167 -173659973 + AluSx SINE Alu 1 289 -23 446 272 80 0 chrX 3316424 3316549 -173657591 + MIR SINE MIR 84 218 -44 226 281 11 62 chrX 3317472 3317650 -173656490 + MER90 LTR ERV1 1 169 -406 226 319 52 24 chrX 3317753 3317963 -173656177 + MER90 LTR ERV1 382 597 -17 210 158 0 0 chrX 3318014 3318052 -173656088 + T-rich Low_complexity Low_complexity 1 38 0 240 229 84 36 chrX 3318235 3318318 -173655822 + MER5A DNA MER1_type 26 112 -77 329 222 49 0 chrX 3318845 3318926 -173655214 + L2 LINE L2 3188 3272 0 412 271 23 17 chrX 3319059 3319219 -173654921 + (TATATG)n Simple_repeat Simple_repeat 1 159 -460 1409 189 66 0 chrX 3319219 3319537 -173654603 - MER44D DNA MER2_type 0 609 1 412 271 23 17 chrX 3319537 3319555 -173654585 + (TATATG)n Simple_repeat Simple_repeat 159 175 -444 270 0 0 0 chrX 3319555 3319585 -173654555 + (CA)n Simple_repeat Simple_repeat 2 31 0 412 271 23 17 chrX 3319585 3319675 -173654465 + (TATATG)n Simple_repeat Simple_repeat 175 619 0 291 256 23 11 chrX 3319712 3319796 -173654344 + (TA)n Simple_repeat Simple_repeat 2 84 -95 1695 206 21 0 chrX 3319796 3320136 -173654004 - MER7A DNA MER2_type 0 346 2 291 256 23 11 chrX 3320136 3320227 -173653913 + (TA)n Simple_repeat Simple_repeat 84 179 0 237 180 0 0 chrX 3321210 3321260 -173652880 + T-rich Low_complexity Low_complexity 1 50 0 226 244 0 0 chrX 3323013 3323058 -173651082 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 240 163 0 0 chrX 3323704 3323747 -173650393 + CT-rich Low_complexity Low_complexity 3 45 0 726 246 65 5 chrX 3325023 3325222 -173648918 + MER20 DNA MER1_type 9 219 0 265 325 117 21 chrX 3326164 3326352 -173647788 + MIR SINE MIR 47 252 -10 213 179 0 39 chrX 3326548 3326626 -173647514 + (TA)n Simple_repeat Simple_repeat 1 75 0 701 207 14 24 chrX 3328083 3328586 -173645554 + CT-rich Low_complexity Low_complexity 1 497 0 180 158 0 0 chrX 3329872 3329910 -173644230 + T-rich Low_complexity Low_complexity 1 38 0 530 270 17 0 chrX 3329910 3330084 -173644056 - MER113 DNA MER1_type? -213 308 132 1275 242 25 28 chrX 3330323 3330757 -173643383 + MLT1C LTR MaLR 1 433 -34 1905 160 0 22 chrX 3330760 3331078 -173643062 - AluJb SINE Alu 0 312 2 180 179 0 0 chrX 3331851 3331890 -173642250 + (TATG)n Simple_repeat Simple_repeat 1 39 0 409 196 17 12 chrX 3331978 3332151 -173641989 + (TA)n Simple_repeat Simple_repeat 1 174 0 25 31 0 0 chrX 3332153 3332185 -173641955 + AT_rich Low_complexity Low_complexity 1 32 0 1792 158 13 20 chrX 3332315 3332441 -173641699 + AluJo SINE Alu 6 131 -181 1604 178 34 17 chrX 3332441 3332739 -173641401 + AluJo SINE Alu 1 303 -9 1792 158 13 20 chrX 3332739 3332916 -173641224 + AluJo SINE Alu 131 307 -5 336 176 0 0 chrX 3333118 3333186 -173640954 + (TG)n Simple_repeat Simple_repeat 1 68 0 180 0 0 0 chrX 3334276 3334296 -173639844 + (CA)n Simple_repeat Simple_repeat 2 21 0 1415 178 83 14 chrX 3335886 3336162 -173637978 - AluJb SINE Alu -17 295 1 208 294 101 37 chrX 3336546 3336655 -173637485 - MIR3 SINE MIR 0 208 93 189 0 0 0 chrX 3336714 3336735 -173637405 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1676 148 21 17 chrX 3336735 3337015 -173637125 - AluJo SINE Alu -28 284 1 1758 120 8 8 chrX 3337035 3337294 -173636846 + AluSx SINE Alu 38 296 -16 522 222 6 11 chrX 3338080 3338260 -173635880 + GA-rich Low_complexity Low_complexity 1 179 0 389 252 7 0 chrX 3338283 3338434 -173635706 + GA-rich Low_complexity Low_complexity 1 152 0 1394 166 81 8 chrX 3338834 3339081 -173635059 + AluJo SINE Alu 7 271 -41 3077 169 58 36 chrX 3341936 3342276 -173631864 + LTR8A LTR ERV1 1 332 -395 764 125 0 17 chrX 3342276 3342396 -173631744 - L1PA15 LINE L1 -8 6157 6040 3077 169 58 36 chrX 3342396 3342767 -173631373 + LTR8A LTR ERV1 332 727 0 986 139 7 0 chrX 3343287 3343560 -173630580 + GA-rich Low_complexity Low_complexity 1 275 0 21 0 0 0 chrX 3343682 3343703 -173630437 + AT_rich Low_complexity Low_complexity 1 21 0 2702 107 0 0 chrX 3344194 3344558 -173629582 + THE1B LTR MaLR 1 364 0 362 151 14 0 chrX 3345037 3345110 -173629030 + (TA)n Simple_repeat Simple_repeat 2 75 0 2176 122 0 3 chrX 3345999 3346295 -173627845 - AluSx SINE Alu -17 295 1 310 364 54 39 chrX 3346546 3346881 -173627259 + L1MC4a LINE L1 5566 5905 -1903 1978 164 3 0 chrX 3346887 3347198 -173626942 - AluSx SINE Alu 0 312 1 277 321 0 0 chrX 3347970 3348051 -173626089 + MIR SINE MIR 89 169 -93 397 301 68 0 chrX 3349717 3349880 -173624260 - MLT1D LTR MaLR -264 241 68 1722 116 77 116 chrX 3349923 3350276 -173623864 + Charlie3 DNA MER1_type 1 2712 0 512 259 145 0 chrX 3350294 3350522 -173623618 - L1M4 LINE L1 -849 5297 5037 321 359 107 20 chrX 3350590 3351077 -173623063 - L2 LINE L2 -339 2975 2447 314 80 20 0 chrX 3351579 3351629 -173622511 + (TA)n Simple_repeat Simple_repeat 1 51 0 533 28 14 0 chrX 3351837 3351908 -173622232 + (GA)n Simple_repeat Simple_repeat 2 73 0 183 306 82 35 chrX 3352083 3352168 -173621972 + MER5B DNA MER1_type 36 124 -54 1538 124 0 0 chrX 3352695 3352936 -173621204 + L1MA5A LINE L1 6051 6291 -6 1997 117 6 22 chrX 3353027 3353343 -173620797 + AluSx SINE Alu 2 312 0 387 227 28 14 chrX 3353418 3353559 -173620581 - L1MB4 LINE L1 -38 6142 6000 1551 143 16 91 chrX 3353568 3353876 -173620264 - AluJb SINE Alu -16 296 12 2020 130 95 18 chrX 3353876 3354214 -173619926 - THE1B LTR MaLR 0 364 1 2860 103 2 7 chrX 3355034 3355461 -173618679 + L1PB1 LINE L1 5727 6151 0 292 292 21 21 chrX 3355611 3355707 -173618433 - MER5B DNA MER1_type -22 156 61 226 348 118 56 chrX 3355882 3356043 -173618097 - MER5A DNA MER1_type -9 180 10 816 65 0 0 chrX 3356462 3356569 -173617571 + (TA)n Simple_repeat Simple_repeat 2 108 0 560 278 90 75 chrX 3356596 3356618 -173617522 - L1MC5 LINE L1 -748 7213 7193 2129 145 24 19 chrX 3356618 3356991 -173617149 + THE1C LTR MaLR 1 375 0 560 278 90 75 chrX 3356991 3357356 -173616784 - L1MC5 LINE L1 -768 7193 6820 330 26 0 0 chrX 3357421 3357460 -173616680 + (CA)n Simple_repeat Simple_repeat 1 39 0 434 33 17 0 chrX 3357556 3357616 -173616524 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 183 80 0 0 chrX 3357666 3357691 -173616449 + (TATG)n Simple_repeat Simple_repeat 3 27 0 184 365 50 25 chrX 3358407 3358566 -173615574 + L2 LINE L2 2308 2470 -844 883 144 0 8 chrX 3359484 3359616 -173614524 - FLAM_A SINE Alu -1 132 2 23 33 0 0 chrX 3359745 3359775 -173614365 + AT_rich Low_complexity Low_complexity 1 30 0 2014 94 33 14 chrX 3359814 3360089 -173614051 + AluSx SINE Alu 1 280 -32 213 121 0 0 chrX 3360137 3360170 -173613970 + (TA)n Simple_repeat Simple_repeat 1 33 0 1084 216 52 79 chrX 3360305 3360780 -173613360 - MER39 LTR ERV1 0 687 24 299 358 22 17 chrX 3360961 3361140 -173613000 + MER5A DNA MER1_type 1 180 -9 306 294 159 33 chrX 3363313 3363735 -173610405 + HAL1 LINE L1 1112 1586 -921 1374 143 4 44 chrX 3364658 3364910 -173609230 - L1MA9 LINE L1 -284 6028 5787 685 266 0 33 chrX 3365186 3365370 -173608770 + MLT1E2 LTR MaLR 431 608 -18 549 330 132 18 chrX 3365536 3366090 -173608050 + L1ME3A LINE L1 3508 4124 -2022 399 317 96 28 chrX 3366116 3366510 -173607630 + L1ME3A LINE L1 5521 5941 -229 1654 139 12 8 chrX 3367712 3367970 -173606170 - AluJo SINE Alu -20 292 34 243 297 17 114 chrX 3368183 3368358 -173605782 + L2 LINE L2 3151 3308 -5 202 304 14 0 chrX 3368639 3368708 -173605432 + (TTCGGG)n Simple_repeat Simple_repeat 6 75 0 22 0 0 0 chrX 3369465 3369487 -173604653 + AT_rich Low_complexity Low_complexity 1 22 0 369 75 0 0 chrX 3369565 3369618 -173604522 + (TG)n Simple_repeat Simple_repeat 2 54 0 186 171 0 0 chrX 3369986 3370027 -173604113 + (CA)n Simple_repeat Simple_repeat 2 42 0 1717 163 6 41 chrX 3371458 3371778 -173602362 + AluJo SINE Alu 1 309 -3 468 0 0 0 chrX 3371804 3371856 -173602284 + (TG)n Simple_repeat Simple_repeat 2 53 0 1808 183 0 3 chrX 3372596 3372908 -173601232 + AluJo SINE Alu 1 311 -1 1508 152 134 0 chrX 3373033 3373302 -173600838 + AluSx SINE Alu 2 306 -6 258 156 0 0 chrX 3373302 3373347 -173600793 + G-rich Low_complexity Low_complexity 1 45 0 1213 223 79 112 chrX 3373500 3374145 -173599995 + MLT1E2 LTR MaLR 1 626 0 1544 197 9 22 chrX 3374988 3375303 -173598837 + AluJo SINE Alu 1 311 -1 297 302 101 27 chrX 3375448 3375597 -173598543 + MIR SINE MIR 32 191 -71 1238 107 31 0 chrX 3376295 3376491 -173597649 + L1PA13 LINE L1 5893 6094 -69 742 258 5 21 chrX 3376691 3376881 -173597259 - MER20 DNA MER1_type -2 217 31 4384 118 3 6 chrX 3377304 3377963 -173596177 - L1PA13 LINE L1 -11 6152 5496 604 291 103 56 chrX 3379340 3379808 -173594332 - MLT1H1 LTR MaLR 0 555 66 230 313 0 0 chrX 3379947 3380014 -173594126 + MER117 DNA MER1_type 87 153 -44 966 269 62 0 chrX 3380801 3381106 -173593034 + MER33 DNA MER1_type 1 324 0 1556 181 61 3 chrX 3382144 3382470 -173591670 - MLT1A1 LTR MaLR 0 365 21 439 308 108 29 chrX 3382735 3383050 -173591090 - L2 LINE L2 -1423 1891 1552 651 170 26 46 chrX 3383286 3383439 -173590701 - MLT2C1 LTR ERVL -55 342 193 1615 186 7 17 chrX 3383709 3384004 -173590136 + AluJo SINE Alu 1 292 -20 1265 172 4 0 chrX 3384004 3384237 -173589903 + L1MA3 LINE L1 6071 6304 -1 1788 140 3 40 chrX 3384849 3385149 -173588991 - AluJo SINE Alu -18 294 6 480 89 0 0 chrX 3385213 3385292 -173588848 + (TC)n Simple_repeat Simple_repeat 2 80 0 296 149 53 9 chrX 3386742 3386856 -173587284 + (TA)n Simple_repeat Simple_repeat 1 119 0 272 48 24 0 chrX 3387573 3387615 -173586525 + (TG)n Simple_repeat Simple_repeat 2 44 0 247 290 0 0 chrX 3387617 3387686 -173586454 + GA-rich Low_complexity Low_complexity 2 70 0 938 9 0 9 chrX 3391600 3391775 -173582365 - AluY SINE Alu 0 345 172 1792 169 11 55 chrX 3393230 3393609 -173580531 + MLT1A1 LTR MaLR 4 365 0 2190 229 14 27 chrX 3393609 3394128 -173580012 + MLT1A1-int LTR MaLR 1 512 -1223 1555 182 10 40 chrX 3395136 3395433 -173578707 - AluJo SINE Alu -24 288 1 275 219 41 41 chrX 3395886 3395959 -173578181 - LTR16C LTR ERVL -1 490 418 180 0 0 0 chrX 3399055 3399075 -173575065 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 459 0 0 0 chrX 3399074 3399125 -173575015 + (TG)n Simple_repeat Simple_repeat 2 52 0 7277 41 1 1 chrX 3399610 3400801 -173573339 + L1PA4 LINE L1 4962 6152 -3 1095 15 8 0 chrX 3400836 3400967 -173573173 + L1PA5 LINE L1 6023 6154 0 341 419 16 0 chrX 3401499 3401683 -173572457 - L3 LINE CR1 -11 1566 1380 848 253 78 32 chrX 3402550 3403024 -173571116 - L1ME3 LINE L1 -2 6160 5665 27 29 0 0 chrX 3403083 3403117 -173571023 + AT_rich Low_complexity Low_complexity 1 34 0 225 300 0 12 chrX 3403120 3403200 -173570940 + CT-rich Low_complexity Low_complexity 1 79 0 479 261 144 39 chrX 3403256 3403589 -173570551 - L1MCc LINE L1 -3319 3622 3255 263 299 82 42 chrX 3403623 3404051 -173570089 - L1MCc LINE L1 -4815 2307 1808 41 48 0 0 chrX 3404159 3404221 -173569919 + AT_rich Low_complexity Low_complexity 1 62 0 276 348 105 20 chrX 3404232 3404583 -173569557 - L1MCc LINE L1 -4887 1536 1156 282 224 0 0 chrX 3405307 3405365 -173568775 - L1MCc LINE L1 -6347 76 19 305 277 22 7 chrX 3405444 3405581 -173568559 + (TA)n Simple_repeat Simple_repeat 2 140 0 1887 157 0 7 chrX 3405609 3405903 -173568237 - AluSx SINE Alu -14 298 7 4367 92 5 17 chrX 3405920 3406563 -173567577 - L1PB1 LINE L1 -218 5933 5299 1737 146 26 0 chrX 3406912 3407179 -173566961 + AluSx SINE Alu 1 274 -38 208 297 66 22 chrX 3407297 3407388 -173566752 - L2 LINE L2 -231 3041 2947 758 233 48 37 chrX 3407672 3407861 -173566279 + MLT1E LTR MaLR 371 561 -32 198 258 79 45 chrX 3408813 3408902 -173565238 + L3b LINE CR1 1276 1367 -216 723 183 59 6 chrX 3409270 3409458 -173564682 + L1MB4 LINE L1 5272 5474 -696 192 77 0 0 chrX 3410967 3410993 -173563147 + (TG)n Simple_repeat Simple_repeat 2 27 0 1589 163 10 60 chrX 3410993 3411294 -173562846 - AluJo SINE Alu -26 286 1 1361 240 116 7 chrX 3411352 3411785 -173562355 - MLT2B1 LTR ERVL -40 480 1 1582 182 30 23 chrX 3412050 3412352 -173561788 - AluJo SINE Alu -8 304 1 1414 236 159 14 chrX 3412708 3413149 -173560991 - MLT1D LTR MaLR 0 505 1 1843 153 10 7 chrX 3413453 3413753 -173560387 - AluSx SINE Alu -11 301 1 953 144 0 11 chrX 3413758 3413938 -173560202 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 396 230 11 6 chrX 3413942 3414120 -173560020 + CT-rich Low_complexity Low_complexity 2 180 0 235 264 50 16 chrX 3414809 3414930 -173559210 + (TGGG)n Simple_repeat Simple_repeat 2 126 0 * 493 251 34 17 chrX 3414842 3415017 -173559123 + G-rich Low_complexity Low_complexity 2 179 0 561 213 0 0 chrX 3415028 3415192 -173558948 + G-rich Low_complexity Low_complexity 1 164 0 205 338 0 0 chrX 3415959 3416027 -173558113 - MIR3 SINE MIR -28 180 113 201 321 46 30 chrX 3417607 3417738 -173556402 + MIR SINE MIR 3 135 -127 2490 195 38 24 chrX 3417791 3418325 -173555815 + L1MB4 LINE L1 5600 6140 -40 28 61 0 0 chrX 3418356 3418405 -173555735 + AT_rich Low_complexity Low_complexity 1 49 0 197 0 0 67 chrX 3418979 3419009 -173555131 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 27 29 0 0 chrX 3419146 3419180 -173554960 + GC_rich Low_complexity Low_complexity 1 34 0 287 216 57 34 chrX 3419400 3419488 -173554652 - LTR4 LTR ERV1 -500 96 7 * 587 203 138 91 chrX 3419472 3419764 -173554376 + LTR1B LTR ERV1 487 745 -81 1111 252 86 45 chrX 3420093 3420558 -173553582 + LTR1 LTR ERV1 2 485 -300 580 207 18 65 chrX 3420561 3420778 -173553362 - LTR4 LTR ERV1 0 596 390 280 260 21 62 chrX 3421072 3421168 -173552972 - LTR4 LTR ERV1 -479 117 26 273 98 0 0 chrX 3421309 3421350 -173552790 + (CA)n Simple_repeat Simple_repeat 1 41 0 231 238 19 9 chrX 3421509 3421614 -173552526 + (TA)n Simple_repeat Simple_repeat 2 107 0 516 273 61 6 chrX 3421722 3421887 -173552253 + REP3 LTR ERV 389 562 0 1253 195 84 15 chrX 3422168 3422289 -173551851 + AluJo SINE Alu 1 112 -200 270 0 0 0 chrX 3422289 3422319 -173551821 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1253 195 84 15 chrX 3422319 3422459 -173551681 + AluJo SINE Alu 112 280 -32 225 163 0 0 chrX 3422706 3422755 -173551385 + G-rich Low_complexity Low_complexity 1 49 0 204 97 0 0 chrX 3422903 3422934 -173551206 + (G)n Simple_repeat Simple_repeat 1 31 0 366 369 0 0 chrX 3422966 3423142 -173550998 + G-rich Low_complexity Low_complexity 1 176 0 289 292 4 8 chrX 3424046 3424217 -173549923 + C-rich Low_complexity Low_complexity 1 170 0 676 183 56 16 chrX 3426213 3426339 -173547801 + FLAM_A SINE Alu 2 132 -1 217 314 0 14 chrX 3426577 3426647 -173547493 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 183 129 0 0 chrX 3426659 3426690 -173547450 + (CATA)n Simple_repeat Simple_repeat 2 32 0 258 222 0 0 chrX 3426942 3426996 -173547144 - L1MA5 LINE L1 -198 6102 6049 482 79 13 0 chrX 3427781 3427857 -173546283 + (TC)n Simple_repeat Simple_repeat 1 77 0 347 344 0 6 chrX 3427859 3428067 -173546073 + C-rich Low_complexity Low_complexity 1 206 0 206 279 0 25 chrX 3428175 3428333 -173545807 + C-rich Low_complexity Low_complexity 6 159 0 21 0 0 0 chrX 3428790 3428811 -173545329 + AT_rich Low_complexity Low_complexity 1 21 0 1472 194 17 17 chrX 3430797 3431090 -173543050 + AluJo SINE Alu 17 309 -3 2178 103 7 7 chrX 3431112 3431403 -173542737 - AluSq SINE Alu -21 292 2 1281 186 68 15 chrX 3431661 3431925 -173542215 + AluJo SINE Alu 1 278 -34 724 181 129 0 chrX 3431926 3432081 -173542059 + L1PA16 LINE L1 5983 6157 -9 28 29 0 0 chrX 3432081 3432116 -173542024 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chrX 3432145 3432185 -173541955 + AT_rich Low_complexity Low_complexity 1 40 0 2161 129 0 0 chrX 3432642 3432944 -173541196 + AluSx SINE Alu 1 302 -10 186 43 0 0 chrX 3432970 3432993 -173541147 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 183 259 0 0 chrX 3434604 3434662 -173539478 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1004 323 56 37 chrX 3436780 3437347 -173536793 + L2 LINE L2 1050 1627 -1687 774 330 8 42 chrX 3437431 3437788 -173536352 + MLT1I LTR MaLR 63 407 -2 405 313 96 36 chrX 3437799 3438080 -173536060 + L2 LINE L2 1648 1945 -1369 1298 279 151 19 chrX 3438194 3439000 -173535140 + L2 LINE L2 1943 2855 -459 2278 115 63 17 chrX 3439021 3439369 -173534771 + THE1B LTR MaLR 1 364 0 2300 115 29 3 chrX 3439770 3440118 -173534022 + L1MA3 LINE L1 5947 6303 -2 27 22 0 22 chrX 3440334 3440354 -173533786 + AT_rich Low_complexity Low_complexity 1 20 -24 2064 115 31 3 chrX 3440354 3440640 -173533500 - AluSg SINE Alu -16 294 1 27 22 0 22 chrX 3440640 3440664 -173533476 + AT_rich Low_complexity Low_complexity 20 44 0 32 43 0 0 chrX 3440706 3440752 -173533388 + AT_rich Low_complexity Low_complexity 1 46 0 214 152 55 18 chrX 3440755 3440920 -173533220 + (TATAA)n Simple_repeat Simple_repeat 4 174 0 346 191 52 17 chrX 3440946 3441119 -173533021 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 237 166 70 0 chrX 3441130 3441287 -173532853 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 21 57 0 0 chrX 3441438 3441473 -173532667 + AT_rich Low_complexity Low_complexity 1 35 0 204 125 0 0 chrX 3441590 3441622 -173532518 + (GA)n Simple_repeat Simple_repeat 1 32 0 3525 86 27 5 chrX 3442095 3442538 -173531602 + MLT2A2 LTR ERVL 1 453 0 233 265 12 24 chrX 3442644 3442700 -173531440 + (CATATA)n Simple_repeat Simple_repeat 2 58 -25 2593 121 14 16 chrX 3442700 3443065 -173531075 + THE1B LTR MaLR 1 364 0 233 265 12 24 chrX 3443065 3443091 -173531049 + (CATATA)n Simple_repeat Simple_repeat 58 83 0 828 78 95 0 chrX 3445646 3445669 -173528471 - L1MA2 LINE L1 -6 6298 6279 201 74 0 0 chrX 3445669 3445696 -173528444 + (TA)n Simple_repeat Simple_repeat 1 27 0 828 78 95 0 chrX 3445696 3445788 -173528352 - L1MA2 LINE L1 -25 6279 6172 447 256 8 8 chrX 3445792 3445913 -173528227 + Charlie4a DNA MER1_type 14 134 -374 384 256 40 24 chrX 3445924 3446049 -173528091 + Charlie4a DNA MER1_type 209 335 -173 832 173 0 7 chrX 3446073 3446212 -173527928 - FLAM_C SINE Alu 0 143 6 295 257 44 37 chrX 3446229 3446365 -173527775 + Charlie4a DNA MER1_type 352 488 -20 1874 181 7 0 chrX 3446610 3446919 -173527221 + AluJb SINE Alu 1 311 -1 1248 155 17 26 chrX 3448360 3448592 -173525548 - AluJo SINE Alu -82 230 1 900 155 0 0 chrX 3448592 3448721 -173525419 - AluJb SINE Alu -17 295 167 985 137 0 10 chrX 3449831 3450079 -173524061 - AluJb SINE Alu -16 296 1 620 284 12 12 chrX 3450123 3450292 -173523848 + MER5B DNA MER1_type 4 172 -6 316 288 33 79 chrX 3450366 3450606 -173523534 - HAL1 LINE L1 0 2507 2279 1839 183 0 0 chrX 3450649 3450944 -173523196 - AluJb SINE Alu -17 295 1 866 297 82 35 chrX 3451265 3451589 -173522551 - HAL1 LINE L1 -711 1796 1434 2624 118 64 10 chrX 3451589 3451995 -173522145 + MSTA LTR MaLR 1 428 0 866 297 82 35 chrX 3451995 3452233 -173521907 - HAL1 LINE L1 -1073 1434 1208 2870 126 29 6 chrX 3453080 3453558 -173520582 + MER39B LTR ERV1 1 489 -164 5047 129 15 44 chrX 3453567 3453596 -173520544 + L1PA16 LINE L1 5303 5331 -835 1883 128 14 14 chrX 3453596 3453919 -173520221 + AluSx SINE Alu 1 323 0 5047 129 15 44 chrX 3453919 3454759 -173519381 + L1PA16 LINE L1 5331 6148 -18 790 174 38 38 chrX 3454759 3454943 -173519197 + MER39B LTR ERV1 470 653 0 2075 171 96 19 chrX 3455430 3455846 -173518294 + LTR29 LTR ERV1 175 622 0 710 184 0 70 chrX 3455857 3456015 -173518125 + LTR29-int LTR ERV1 10 156 -6175 335 191 16 0 chrX 3456015 3456078 -173518062 + LTR29 LTR ERV1 559 622 0 578 261 44 54 chrX 3456113 3456206 -173517934 + MIR SINE MIR 61 153 -109 1658 205 84 70 chrX 3456206 3456703 -173517437 + MLT1D LTR MaLR 1 504 -1 578 261 44 54 chrX 3456703 3456812 -173517328 + MIR SINE MIR 153 261 -1 2245 112 0 22 chrX 3456973 3457286 -173516854 - AluSx SINE Alu -6 306 1 2325 143 28 3 chrX 3457594 3457950 -173516190 + MLT1A1 LTR MaLR 1 365 0 1363 172 62 44 chrX 3458642 3458915 -173515225 + AluJo SINE Alu 1 278 -34 270 0 0 0 chrX 3458920 3458950 -173515190 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 216 143 0 0 chrX 3460387 3460429 -173513711 + (TG)n Simple_repeat Simple_repeat 1 42 0 515 273 22 57 chrX 3460609 3460757 -173513383 - MER20 DNA MER1_type 0 219 67 3845 144 2 0 chrX 3460757 3461340 -173512800 - L1PB4 LINE L1 -7 6149 5566 4128 147 1 0 chrX 3460762 3461428 -173512712 - L1PB4 LINE L1 -12 6144 5478 515 273 22 57 chrX 3461340 3461501 -173512639 - MER20 DNA MER1_type -152 67 1 21 0 0 0 chrX 3462552 3462573 -173511567 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chrX 3463067 3463099 -173511041 + (TG)n Simple_repeat Simple_repeat 1 32 0 1361 240 85 9 chrX 3463243 3463677 -173510463 + MLT1C LTR MaLR 1 467 0 23 54 0 0 chrX 3463690 3463727 -173510413 + AT_rich Low_complexity Low_complexity 1 37 0 364 220 11 0 chrX 3463737 3463828 -173510312 - L1MA9 LINE L1 -34 6278 6187 230 200 77 15 chrX 3464055 3464120 -173510020 + MIR3 SINE MIR 115 183 -25 184 293 104 9 chrX 3464757 3464863 -173509277 - L2 LINE L2 -21 3251 3136 643 229 133 0 chrX 3465349 3465515 -173508625 - MER5A DNA MER1_type -1 188 1 213 238 0 0 chrX 3465709 3465751 -173508389 - L2 LINE L2 -11 3302 3261 199 354 77 39 chrX 3466011 3466141 -173507999 - L2 LINE L2 -1 3271 3137 839 273 83 29 chrX 3466258 3466788 -173507352 - MLT1F1 LTR MaLR 0 567 2 1997 152 10 0 chrX 3467513 3467816 -173506324 + AluJb SINE Alu 5 310 -2 351 206 109 91 chrX 3469024 3469144 -173504996 + MIR SINE MIR 67 192 -70 1763 177 43 0 chrX 3469144 3469267 -173504873 + AluJo SINE Alu 1 117 -195 183 42 0 0 chrX 3469267 3469291 -173504849 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1763 177 43 0 chrX 3469291 3469466 -173504674 + AluJo SINE Alu 117 312 0 351 206 109 91 chrX 3469466 3469520 -173504620 + MIR SINE MIR 192 244 -18 186 397 65 9 chrX 3469596 3469810 -173504330 + L2 LINE L2 2750 2975 -339 1984 138 7 3 chrX 3472065 3472361 -173501779 - AluJb SINE Alu -15 297 1 1511 181 0 36 chrX 3472571 3472848 -173501292 + AluJb SINE Alu 1 267 -45 2535 46 0 3 chrX 3473561 3473864 -173500276 - AluY SINE Alu 0 311 10 1455 201 7 31 chrX 3474046 3474339 -173499801 + AluJo SINE Alu 1 286 -26 28 29 0 0 chrX 3474340 3474375 -173499765 + AT_rich Low_complexity Low_complexity 1 35 0 483 314 53 0 chrX 3474785 3474954 -173499186 + MIR SINE MIR 37 214 -48 1059 99 0 0 chrX 3475003 3475155 -173498985 + L1PA8 LINE L1 6020 6171 -1 394 160 13 0 chrX 3475870 3475945 -173498195 - MADE1 DNA Mariner -4 76 1 1061 151 0 6 chrX 3475955 3476114 -173498026 - AluJb SINE Alu -25 287 130 2338 44 41 0 chrX 3476709 3477003 -173497137 - AluY SINE Alu -5 306 1 181 245 80 123 chrX 3477592 3477715 -173496425 + MIR SINE MIR 71 187 -75 1986 143 10 0 chrX 3477715 3478008 -173496132 + AluJo SINE Alu 1 296 -16 181 245 80 123 chrX 3478008 3478047 -173496093 + MIR SINE MIR 187 226 -36 2084 130 0 0 chrX 3478271 3478555 -173495585 - AluSx SINE Alu -17 295 12 1152 105 0 0 chrX 3478566 3478709 -173495431 - AluSq/x SINE Alu -169 144 2 410 188 12 0 chrX 3480370 3480450 -173493690 - AluSc SINE Alu -56 253 173 1601 94 0 0 chrX 3480517 3480719 -173493421 - AluSx SINE Alu -90 222 21 259 285 183 38 chrX 3481033 3481405 -173492735 + L2 LINE L2 943 1368 -1946 259 210 97 0 chrX 3481549 3481611 -173492529 + L2 LINE L2 1934 2001 -1313 1664 318 127 20 chrX 3481934 3483136 -173491004 + L2 LINE L2 1975 3311 -2 325 288 159 0 chrX 3483495 3483658 -173490482 - Charlie8 DNA MER1_type -2137 280 92 643 181 78 0 chrX 3483949 3484065 -173490075 + FRAM SINE Alu 3 127 -49 306 275 0 44 chrX 3484199 3484290 -173489850 + L2 LINE L2 3185 3271 -1 487 266 34 17 chrX 3484390 3484567 -173489573 - MIR SINE MIR -31 231 52 21 36 0 0 chrX 3485016 3485044 -173489096 + AT_rich Low_complexity Low_complexity 1 28 0 336 102 0 0 chrX 3485044 3485093 -173489047 + (CA)n Simple_repeat Simple_repeat 2 50 0 2223 115 16 0 chrX 3486137 3486441 -173487699 - AluSx SINE Alu -2 310 2 26 0 0 0 chrX 3486580 3486606 -173487534 + AT_rich Low_complexity Low_complexity 1 26 0 467 339 76 49 chrX 3486884 3487292 -173486848 + HAL1b LINE L1 115 1617 -816 208 238 8 57 chrX 3487744 3487866 -173486274 + A-rich Low_complexity Low_complexity 4 119 0 28 48 0 0 chrX 3487950 3487992 -173486148 + AT_rich Low_complexity Low_complexity 1 42 0 244 155 42 28 chrX 3488137 3488208 -173485932 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 2028 121 0 0 chrX 3488308 3488590 -173485550 + AluSx SINE Alu 1 282 -30 226 207 0 35 chrX 3488700 3488758 -173485382 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 499 275 39 30 chrX 3488998 3489336 -173484804 + L1M4 LINE L1 2940 3280 -2866 471 336 73 83 chrX 3489404 3490485 -173483655 + L1M4 LINE L1 3296 4372 -1774 337 242 31 39 chrX 3490962 3491090 -173483050 + LTR33 LTR ERVL 94 220 -301 2199 109 10 0 chrX 3491242 3491535 -173482605 + AluSg SINE Alu 1 296 -14 249 277 99 21 chrX 3491580 3491721 -173482419 + L1M4 LINE L1 4942 5093 -1053 527 176 7 110 chrX 3491890 3492026 -173482114 - FLAM_A SINE Alu -11 122 1 436 339 32 56 chrX 3492553 3492682 -173481458 - L1PA16 LINE L1 -253 5868 5737 1500 141 41 19 chrX 3492682 3492952 -173481188 + L1PA16 LINE L1 5881 6156 -10 436 339 32 56 chrX 3492952 3493200 -173480940 - L1ME4a LINE L1 -384 5737 5500 1816 163 3 16 chrX 3494013 3494319 -173479821 - AluJo SINE Alu -10 302 1 672 221 67 39 chrX 3496029 3496237 -173477903 - MER20 DNA MER1_type -5 214 1 740 162 54 18 chrX 3496286 3496453 -173477687 - MER20 DNA MER1_type 0 219 47 977 220 23 19 chrX 3496525 3496739 -173477401 - MER20 DNA MER1_type -4 215 1 197 266 65 81 chrX 3496979 3497103 -173477037 - L2 LINE L2 -868 2446 2325 783 192 0 0 chrX 3497195 3497372 -173476768 + (CAT)n Simple_repeat Simple_repeat 2 178 0 389 286 56 16 chrX 3497732 3497858 -173476282 - MER5A DNA MER1_type -11 178 48 946 237 27 5 chrX 3497968 3498187 -173475953 - MER58A DNA MER1_type 0 224 1 224 292 0 15 chrX 3498689 3498754 -173475386 + L2 LINE L2 3250 3313 0 716 121 0 121 chrX 3500202 3500351 -173473789 - FRAM SINE Alu -22 154 24 1501 262 82 35 chrX 3500390 3500902 -173473238 - MLT1E LTR MaLR -3 590 55 1299 242 77 41 chrX 3501148 3501590 -173472550 - MLT1C LTR MaLR -9 458 1 25 31 0 0 chrX 3502277 3502309 -173471831 + AT_rich Low_complexity Low_complexity 1 32 0 670 307 18 53 chrX 3502593 3502714 -173471426 + L2 LINE L2 3041 3165 -148 1478 191 10 37 chrX 3502714 3503013 -173471127 + AluJo SINE Alu 1 291 -21 670 307 18 53 chrX 3503013 3503174 -173470966 + L2 LINE L2 3165 3313 0 3418 140 2 4 chrX 3504253 3504809 -173469331 + L1PA15 LINE L1 5611 6165 0 218 157 59 20 chrX 3504885 3504936 -173469204 + A-rich Low_complexity Low_complexity 5 57 0 2193 118 0 3 chrX 3506026 3506331 -173467809 + AluSg SINE Alu 1 304 -6 1856 164 0 28 chrX 3506348 3506666 -173467474 + AluJo SINE Alu 1 309 -3 22 56 0 0 chrX 3508491 3508527 -173465613 + AT_rich Low_complexity Low_complexity 1 36 0 2308 88 3 7 chrX 3508531 3508836 -173465304 + AluY SINE Alu 1 304 -7 930 186 6 51 chrX 3509985 3510162 -173463978 + AluJo SINE Alu 1 169 -143 1568 169 55 44 chrX 3510162 3510528 -173463612 - THE1C LTR MaLR 0 375 6 664 168 67 0 chrX 3510533 3510652 -173463488 + AluJo SINE Alu 165 291 -21 258 214 0 0 chrX 3512034 3512090 -173462050 + L1MB3 LINE L1 6077 6132 -51 184 281 16 16 chrX 3512719 3512783 -173461357 + L2 LINE L2 3209 3272 0 458 163 92 0 chrX 3513173 3513271 -173460869 + L1MB3 LINE L1 6077 6183 0 185 365 29 19 chrX 3514023 3514127 -173460013 - MIR SINE MIR -50 212 108 215 229 0 0 chrX 3514255 3514303 -173459837 - MIR SINE MIR -66 142 95 224 250 0 0 chrX 3514492 3514536 -173459604 - L2 LINE L2 -12 3260 3217 2386 184 12 5 chrX 3514929 3515358 -173458782 + MSTB1 LTR MaLR 1 432 0 21 36 0 0 chrX 3516627 3516655 -173457485 + AT_rich Low_complexity Low_complexity 1 28 0 440 18 18 0 chrX 3516703 3516760 -173457380 + (TG)n Simple_repeat Simple_repeat 1 58 0 1419 188 73 4 chrX 3516760 3517021 -173457119 - AluJo SINE Alu -33 279 1 312 316 101 40 chrX 3517510 3517788 -173456352 + L2 LINE L2 3019 3313 0 2215 121 21 37 chrX 3518214 3518595 -173455545 + THE1C LTR MaLR 1 375 0 207 350 21 10 chrX 3518729 3518826 -173455314 + MIR SINE MIR 99 196 -66 335 330 144 8 chrX 3518837 3519101 -173455039 + L2 LINE L2 3013 3312 -1 251 250 26 40 chrX 3519092 3519168 -173454972 + MIR SINE MIR 188 262 0 * 1315 162 97 65 chrX 3520269 3520439 -173453701 - AluJo SINE Alu -11 301 117 1829 170 3 0 chrX 3520439 3520728 -173453412 + AluJb SINE Alu 1 290 -22 1315 162 97 65 chrX 3520728 3520847 -173453293 - AluJo SINE Alu -195 117 3 1817 171 0 16 chrX 3521687 3521992 -173452148 + AluJo SINE Alu 2 301 -11 2587 39 7 3 chrX 3522381 3522690 -173451450 - AluY SINE Alu -1 310 1 707 211 46 17 chrX 3522724 3522899 -173451241 + MSTD LTR MaLR 215 394 -2 474 328 134 31 chrX 3523122 3523665 -173450475 - L2 LINE L2 -833 2481 1883 471 198 18 79 chrX 3524035 3524307 -173449833 + MSTD LTR MaLR 3 320 -76 426 20 0 0 chrX 3526462 3526513 -173447627 + (CA)n Simple_repeat Simple_repeat 1 51 0 1635 193 3 3 chrX 3526587 3526883 -173447257 - AluJb SINE Alu -8 304 9 2147 111 23 7 chrX 3527555 3527862 -173446278 + AluSx SINE Alu 1 312 0 307 306 175 22 chrX 3529131 3529314 -173444826 - MIR SINE MIR -7 255 45 733 212 20 0 chrX 3529720 3529866 -173444274 + AluJo SINE Alu 3 151 -161 733 169 0 0 chrX 3529995 3530119 -173444021 + AluJo SINE Alu 156 279 -33 22 35 0 0 chrX 3530143 3530172 -173443968 + AT_rich Low_complexity Low_complexity 1 29 0 1018 197 96 60 chrX 3530413 3530839 -173443301 - MLT1D LTR MaLR -4 501 73 214 280 20 0 chrX 3531035 3531085 -173443055 + L2 LINE L2 3248 3298 -15 1778 183 27 0 chrX 3531855 3532155 -173441985 + AluJo SINE Alu 1 308 -4 2052 122 0 17 chrX 3532806 3533102 -173441038 - AluSx SINE Alu -17 295 5 2419 92 0 0 chrX 3533657 3533962 -173440178 - AluSc SINE Alu -4 305 1 24 0 0 0 chrX 3536014 3536038 -173438102 + AT_rich Low_complexity Low_complexity 1 24 0 1545 172 52 7 chrX 3537095 3537385 -173436755 - AluJo SINE Alu -8 304 2 239 309 12 12 chrX 3537395 3537476 -173436664 + L2 LINE L2 3227 3307 -6 211 196 87 0 chrX 3537805 3537851 -173436289 + MIR SINE MIR 92 141 -67 193 235 78 0 chrX 3538768 3538819 -173435321 + L2 LINE L2 3201 3255 -17 833 261 23 5 chrX 3539178 3539393 -173434747 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chrX 3539820 3539841 -173434299 + AT_rich Low_complexity Low_complexity 1 21 0 4440 129 13 16 chrX 3540958 3541377 -173432763 + L1PA16 LINE L1 5408 5826 -340 2599 48 3 0 chrX 3541377 3541687 -173432453 + AluY SINE Alu 1 311 0 4440 129 13 16 chrX 3541687 3542019 -173432121 + L1PA16 LINE L1 5826 6157 -9 2233 138 40 8 chrX 3542406 3542805 -173431335 + MSTA LTR MaLR 17 428 0 29 0 0 0 chrX 3543579 3543608 -173430532 + AT_rich Low_complexity Low_complexity 1 29 0 1718 152 176 16 chrX 3543615 3543984 -173430156 - MSTC LTR MaLR 0 428 1 1295 190 19 16 chrX 3544695 3545119 -173429021 + MLT1D LTR MaLR 7 485 -20 2367 79 3 3 chrX 3545455 3545760 -173428380 + AluY SINE Alu 1 305 -6 435 245 0 10 chrX 3548350 3548452 -173425688 - MER58B DNA MER1_type -9 332 232 272 338 15 15 chrX 3548791 3548924 -173425216 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 364 249 106 53 chrX 3549061 3549250 -173424890 - L1ME LINE L1 -415 5706 5508 237 83 0 0 chrX 3549300 3549336 -173424804 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 260 296 163 52 chrX 3550340 3550475 -173423665 + L2 LINE L2 3123 3272 0 203 317 0 0 chrX 3550941 3551001 -173423139 + L2 LINE L2 3249 3308 -5 211 271 122 19 chrX 3551358 3551465 -173422675 + MIR SINE MIR 28 145 -63 23 86 0 0 chrX 3551742 3551800 -173422340 + AT_rich Low_complexity Low_complexity 1 58 0 952 193 14 40 chrX 3552233 3552456 -173421684 + MER20 DNA MER1_type 3 219 0 183 222 0 0 chrX 3552478 3552523 -173421617 + GA-rich Low_complexity Low_complexity 4 48 0 * 286 130 0 58 chrX 3552516 3552585 -173421555 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 204 284 14 14 chrX 3552595 3552669 -173421471 + GA-rich Low_complexity Low_complexity 2 75 0 190 340 47 0 chrX 3552698 3552804 -173421336 - MIR SINE MIR -62 200 90 261 245 25 6 chrX 3553373 3553536 -173420604 + CT-rich Low_complexity Low_complexity 4 169 0 412 191 9 18 chrX 3553746 3553856 -173420284 + CT-rich Low_complexity Low_complexity 4 112 0 351 282 40 24 chrX 3554281 3554405 -173419735 + L1MEd LINE L1 1004 1129 -5401 440 282 74 45 chrX 3554489 3554856 -173419284 + L1MEd LINE L1 1293 1649 -4881 231 272 39 19 chrX 3555021 3555124 -173419016 + L1MEd LINE L1 1865 1969 -4571 396 295 48 39 chrX 3555955 3556200 -173417940 + L1MEd LINE L1 3336 3577 -2963 253 293 75 0 chrX 3556336 3556442 -173417698 + MER81 DNA DNA 1 114 0 462 36 0 0 chrX 3556913 3556969 -173417171 + (TG)n Simple_repeat Simple_repeat 2 57 0 676 222 116 25 chrX 3557475 3557673 -173416467 + MER20 DNA MER1_type 4 219 0 270 0 0 0 chrX 3558765 3558795 -173415345 + (TG)n Simple_repeat Simple_repeat 2 31 0 451 276 63 9 chrX 3558831 3559052 -173415088 - L1M4 LINE L1 -3597 2549 2317 1669 144 16 53 chrX 3559830 3560150 -173413990 + AluJo SINE Alu 5 312 0 589 214 231 6 chrX 3560762 3560935 -173413205 - MER20 DNA MER1_type -1 218 7 286 354 16 8 chrX 3560938 3561065 -173413075 + L2 LINE L2 3186 3313 0 215 151 38 57 chrX 3561430 3561483 -173412657 + L2 LINE L2 3220 3271 -1 3445 98 22 4 chrX 3561683 3562185 -173411955 - MER9 LTR ERVK 0 511 1 227 245 187 36 chrX 3562536 3562675 -173411465 - L2 LINE L2 0 3313 3154 22 56 0 0 chrX 3562862 3562898 -173411242 + AT_rich Low_complexity Low_complexity 1 36 0 198 167 0 0 chrX 3563039 3563075 -173411065 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 1465 143 17 28 chrX 3563084 3563137 -173411003 + MLT1A1 LTR MaLR 1 53 -321 4171 99 9 41 chrX 3563137 3563629 -173410511 + L1MA2 LINE L1 5649 6115 -189 2368 78 0 3 chrX 3563629 3563924 -173410216 - AluY SINE Alu -17 294 1 4171 99 9 41 chrX 3563924 3564109 -173410031 + L1MA2 LINE L1 6115 6304 0 1465 143 17 28 chrX 3564109 3564366 -173409774 + MLT1A1 LTR MaLR 53 292 -82 529 170 7 7 chrX 3564450 3564597 -173409543 + (CATA)n Simple_repeat Simple_repeat 2 148 0 210 167 64 26 chrX 3564598 3564676 -173409464 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 214 222 32 16 chrX 3565795 3565858 -173408282 + (TG)n Simple_repeat Simple_repeat 1 64 0 180 0 0 0 chrX 3566342 3566362 -173407778 + (TC)n Simple_repeat Simple_repeat 2 21 0 1832 136 0 0 chrX 3566881 3567132 -173407008 - AluSx SINE Alu -18 294 44 653 228 91 9 chrX 3567866 3568085 -173406055 - MER46C DNA MER2_type -101 237 1 1781 147 6 26 chrX 3568272 3568612 -173405528 - L1MC1 LINE L1 -260 6073 5741 2332 182 7 2 chrX 3569357 3569814 -173404326 - L1PA16 LINE L1 0 6166 5708 24 0 0 0 chrX 3570145 3570169 -173403971 + AT_rich Low_complexity Low_complexity 1 24 0 1742 146 31 17 chrX 3570207 3570318 -173403822 + AluJb SINE Alu 11 119 -193 207 0 0 0 chrX 3570318 3570341 -173403799 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1742 146 31 17 chrX 3570341 3570516 -173403624 + AluJb SINE Alu 119 301 -11 216 390 20 30 chrX 3570591 3570691 -173403449 + L2 LINE L2 2979 3077 -195 1707 185 3 19 chrX 3570793 3571101 -173403039 + AluJo SINE Alu 1 303 -9 21 0 0 0 chrX 3572354 3572375 -173401765 + AT_rich Low_complexity Low_complexity 1 21 0 252 59 0 0 chrX 3572814 3572848 -173401292 + (CCCTAA)n Simple_repeat Simple_repeat 3 36 0 1208 163 154 86 chrX 3573016 3573269 -173400871 + MLT1A1 LTR MaLR 4 287 -78 1625 192 0 24 chrX 3573269 3573560 -173400580 + AluJo SINE Alu 1 284 -28 1208 163 154 86 chrX 3573560 3573643 -173400497 + MLT1A1 LTR MaLR 287 363 -2 396 227 13 53 chrX 3573971 3574121 -173400019 + L1PA16 LINE L1 6007 6150 -16 918 178 11 0 chrX 3574191 3574376 -173399764 + L1MC3 LINE L1 6951 7137 -648 1307 96 0 11 chrX 3574382 3574560 -173399580 - AluSg/x SINE Alu 0 312 137 2309 211 57 10 chrX 3574560 3575187 -173398953 + L1MC3 LINE L1 7129 7785 0 1239 136 60 23 chrX 3575613 3575914 -173398226 - AluSx SINE Alu 0 312 1 208 310 17 0 chrX 3576727 3576785 -173397355 + MIR SINE MIR 30 88 -120 218 320 10 31 chrX 3577769 3577866 -173396274 + L2 LINE L2 3173 3267 -5 1530 192 3 10 chrX 3580211 3580502 -173393638 - AluJo SINE Alu -23 289 1 2216 97 7 0 chrX 3580768 3581068 -173393072 - AluY SINE Alu -9 302 1 184 250 19 0 chrX 3581319 3581371 -173392769 + L2 LINE L2 1703 1755 -1559 309 89 0 0 chrX 3582502 3582547 -173391593 + (TG)n Simple_repeat Simple_repeat 1 45 0 323 218 20 30 chrX 3582662 3582763 -173391377 - MLT1A1 LTR MaLR -263 102 3 238 276 79 0 chrX 3582780 3582856 -173391284 - L2 LINE L2 -47 3266 3185 186 314 29 14 chrX 3582887 3582957 -173391183 + L2 LINE L2 3188 3258 -14 338 252 161 13 chrX 3583350 3583505 -173390635 + L1ME1 LINE L1 5355 5532 -634 2091 63 47 20 chrX 3583541 3583841 -173390299 - L1PA11 LINE L1 0 6174 5867 256 268 89 21 chrX 3583852 3584042 -173390098 + L1ME1 LINE L1 5711 5913 -253 927 174 0 18 chrX 3584164 3584331 -173389809 - AluJo SINE Alu -108 204 41 354 143 0 0 chrX 3584438 3584501 -173389639 + (TG)n Simple_repeat Simple_repeat 2 64 0 775 130 0 9 chrX 3584586 3584701 -173389439 + FRAM SINE Alu 42 155 -21 236 191 106 21 chrX 3584943 3585037 -173389103 + L1MC5 LINE L1 7452 7553 -408 2124 122 3 0 chrX 3586181 3586476 -173387664 + AluSx SINE Alu 1 296 -16 2174 243 75 13 chrX 3587091 3587856 -173386284 + L1MC3 LINE L1 6974 7785 0 766 158 8 0 chrX 3588832 3588959 -173385181 + FLAM_C SINE Alu 2 129 -4 2329 84 7 0 chrX 3589486 3589782 -173384358 + AluSp SINE Alu 1 298 -15 341 262 68 0 chrX 3589788 3589891 -173384249 + MIR3 SINE MIR 94 203 -5 2078 107 57 0 chrX 3590096 3590376 -173383764 - AluSx SINE Alu -14 298 3 1400 199 34 38 chrX 3591009 3591300 -173382840 - AluJo SINE Alu -22 290 1 185 180 20 0 chrX 3591403 3591453 -173382687 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chrX 3591588 3591616 -173382524 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chrX 3592693 3592728 -173381412 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 224 30 0 chrX 3593230 3593297 -173380843 + (TA)n Simple_repeat Simple_repeat 1 69 0 309 183 0 0 chrX 3593334 3593394 -173380746 + (TA)n Simple_repeat Simple_repeat 1 60 0 929 158 0 16 chrX 3593522 3593705 -173380435 + CT-rich Low_complexity Low_complexity 1 180 0 844 168 6 6 chrX 3593724 3593903 -173380237 + CT-rich Low_complexity Low_complexity 1 179 0 240 318 68 11 chrX 3595062 3595150 -173378990 - L2 LINE L2 -291 2981 2889 23 33 0 0 chrX 3595795 3595825 -173378315 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chrX 3596963 3597007 -173377133 + AT_rich Low_complexity Low_complexity 1 44 0 2057 126 7 0 chrX 3597099 3597384 -173376756 + AluSx SINE Alu 1 287 -25 219 114 0 0 chrX 3598129 3598164 -173375976 + (TG)n Simple_repeat Simple_repeat 2 36 0 1869 243 50 24 chrX 3598182 3598885 -173375255 - L1M4 LINE L1 -1304 4842 4122 763 264 10 40 chrX 3598986 3599289 -173374851 + L1MEc LINE L1 514 807 -5589 1542 114 13 9 chrX 3599317 3599545 -173374595 + AluSg/x SINE Alu 77 305 -7 572 280 88 15 chrX 3599568 3599707 -173374433 + L1MEc LINE L1 936 1063 -5152 453 19 0 0 chrX 3599707 3599761 -173374379 + (CA)n Simple_repeat Simple_repeat 2 55 0 572 280 88 15 chrX 3599761 3600018 -173374122 + L1MEc LINE L1 1063 1361 -4854 2048 104 11 21 chrX 3600108 3600395 -173373745 + AluY SINE Alu 1 284 -27 216 0 0 0 chrX 3600395 3600419 -173373721 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 803 267 58 16 chrX 3600448 3600811 -173373329 + L1MEc LINE L1 1601 1978 -4418 1016 257 85 26 chrX 3600823 3601282 -173372858 + L1M4 LINE L1 3673 4158 -1988 340 295 18 36 chrX 3601816 3601928 -173372212 - L1MC4 LINE L1 -1319 6723 6614 1636 249 96 41 chrX 3601931 3602143 -173371997 - MLT2F LTR ERVL -44 619 420 1834 190 22 3 chrX 3602143 3602501 -173371639 + MLT1A1 LTR MaLR 1 365 0 1636 249 96 41 chrX 3602501 3602871 -173371269 - MLT2F LTR ERVL -243 420 5 542 299 19 52 chrX 3603818 3603944 -173370196 - MIR SINE MIR -22 240 122 2326 93 0 13 chrX 3603944 3604254 -173369886 + AluSc SINE Alu 1 306 -3 542 299 19 52 chrX 3604254 3604338 -173369802 - MIR SINE MIR -140 122 37 230 226 139 26 chrX 3604575 3604690 -173369450 + L1MEc LINE L1 44 171 -6225 978 246 139 3 chrX 3604935 3605252 -173368888 - MLT1A1 LTR MaLR -5 360 1 2397 113 52 0 chrX 3605717 3606063 -173368077 - THE1B LTR MaLR 0 364 1 1679 180 34 55 chrX 3606276 3606714 -173367426 + L1MC3 LINE L1 6673 7101 -684 1825 118 33 13 chrX 3606738 3607042 -173367098 + MSTA LTR MaLR 118 427 -1 1112 137 49 0 chrX 3607043 3607247 -173366893 + L1MC3 LINE L1 7099 7312 -473 1725 151 3 34 chrX 3607581 3607879 -173366261 + AluJb SINE Alu 3 291 -21 222 132 59 29 chrX 3607888 3607956 -173366184 + (TA)n Simple_repeat Simple_repeat 1 70 0 2252 73 39 3 chrX 3607967 3608253 -173365887 + AluSc SINE Alu 1 296 -13 1565 194 18 7 chrX 3608286 3608569 -173365571 + AluJo SINE Alu 1 286 -26 390 91 0 0 chrX 3608570 3608625 -173365515 + (CA)n Simple_repeat Simple_repeat 2 56 0 2003 98 42 0 chrX 3608658 3608943 -173365197 - AluSq SINE Alu -16 297 1 2062 155 0 0 chrX 3608951 3609247 -173364893 - AluSx SINE Alu -16 296 1 814 310 30 11 chrX 3609633 3609904 -173364236 + MLT1E LTR MaLR 280 555 -38 1222 204 5 14 chrX 3610513 3610734 -173363406 - MER20 DNA MER1_type 0 219 1 228 256 61 12 chrX 3610878 3610960 -173363180 - MER20B DNA MER1_type -633 150 65 366 23 0 0 chrX 3611302 3611345 -173362795 + (TG)n Simple_repeat Simple_repeat 1 43 0 2029 152 0 0 chrX 3611432 3611741 -173362399 - AluSx SINE Alu -2 310 2 414 161 35 0 chrX 3611748 3611835 -173362305 - L1MB3 LINE L1 0 6183 6094 294 125 0 0 chrX 3612429 3612477 -173361663 + (TC)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chrX 3612480 3612519 -173361621 + (CA)n Simple_repeat Simple_repeat 1 39 0 4109 26 11 0 chrX 3612962 3613429 -173360711 - L1PA4 LINE L1 -3 6152 5681 2019 134 7 16 chrX 3613595 3613902 -173360238 - AluSx SINE Alu -7 305 2 1960 156 0 9 chrX 3614540 3614855 -173359285 - AluSx SINE Alu 0 312 1 210 71 0 0 chrX 3614984 3615012 -173359128 + (GA)n Simple_repeat Simple_repeat 2 29 0 304 289 68 55 chrX 3615457 3615679 -173358461 + MER106B DNA MER1_type 7 1058 -1 1962 150 0 3 chrX 3615847 3616153 -173357987 + AluJo SINE Alu 1 305 -7 1276 284 26 7 chrX 3616220 3616643 -173357497 + MER63B DNA MER1_type 6 436 0 1356 186 12 0 chrX 3617119 3617501 -173356639 + L1P4 LINE L1 5096 5480 -686 1698 168 46 7 chrX 3618928 3619213 -173354927 + AluJo SINE Alu 1 296 -16 1616 190 3 3 chrX 3620986 3621275 -173352865 - AluJb SINE Alu -23 289 1 214 143 32 16 chrX 3622083 3622146 -173351994 + CT-rich Low_complexity Low_complexity 1 64 0 1648 141 0 77 chrX 3622160 3622477 -173351663 - AluJo SINE Alu 0 450 165 2024 118 40 0 chrX 3622477 3622773 -173351367 - AluSq SINE Alu -5 308 1 1648 141 0 77 chrX 3622773 3622915 -173351225 - AluJo SINE Alu -285 165 14 834 236 75 30 chrX 3623083 3623378 -173350762 + MER58 DNA MER1_type 12 2420 0 2604 173 24 4 chrX 3625355 3625807 -173348333 - L1PA16 LINE L1 0 6166 5706 201 74 0 0 chrX 3626211 3626238 -173347902 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 238 12 0 chrX 3626242 3626322 -173347818 + (CA)n Simple_repeat Simple_repeat 2 82 0 23 0 0 0 chrX 3627053 3627076 -173347064 + AT_rich Low_complexity Low_complexity 1 23 0 432 282 99 15 chrX 3627262 3627472 -173346668 + MLT1E1 LTR MaLR 15 244 -410 1645 235 121 50 chrX 3627541 3628095 -173346045 + MLT1E LTR MaLR 1 593 0 1099 293 56 58 chrX 3629208 3629727 -173344413 - MLT1E LTR MaLR -5 588 102 339 209 32 0 chrX 3629718 3629791 -173344349 - MLT1E LTR MaLR -430 137 64 * 360 298 43 31 chrX 3629969 3630130 -173344010 + MIR3 SINE MIR 44 206 -2 1073 212 23 46 chrX 3630192 3630499 -173343641 + MER33 DNA MER1_type 15 314 -10 250 337 12 65 chrX 3631202 3631371 -173342769 + MER5B DNA MER1_type 19 178 0 21 0 0 0 chrX 3631710 3631731 -173342409 + AT_rich Low_complexity Low_complexity 1 21 0 1057 149 8 2 chrX 3632004 3632194 -173341946 + L1PA16 LINE L1 5646 5835 -331 637 278 45 18 chrX 3632311 3632534 -173341606 - LTR16B LTR ERVL -231 233 5 1653 137 9 0 chrX 3632935 3633213 -173340927 - L1PA16 LINE L1 -196 5959 5669 1210 129 144 0 chrX 3633206 3633407 -173340733 + L1PA16 LINE L1 5928 6157 -9 * 688 414 99 39 chrX 3633811 3634193 -173339947 - MLT1C LTR MaLR -60 407 3 221 56 0 28 chrX 3634969 3635005 -173339135 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 626 65 0 2 chrX 3635005 3635090 -173339050 - L1PA3 LINE L1 -20 6148 6059 537 263 120 62 chrX 3635601 3636069 -173338071 - L1MC/D LINE L1 -1986 5822 5328 1839 155 10 0 chrX 3636183 3636480 -173337660 - MLT1B LTR MaLR 0 390 91 1753 188 14 51 chrX 3636484 3636701 -173337439 - MER2 DNA MER2_type -1 344 144 1798 180 30 35 chrX 3636701 3637040 -173337100 - MER1B DNA MER1_type 0 337 1 1753 188 14 51 chrX 3637040 3637178 -173336962 - MER2 DNA MER2_type -201 144 2 415 197 13 0 chrX 3637179 3637255 -173336885 - MLT1B LTR MaLR -303 87 11 1025 231 14 24 chrX 3637293 3637558 -173336582 + MLT2C1 LTR ERVL 99 429 -35 225 191 55 45 chrX 3637584 3637694 -173336446 + (TATAA)n Simple_repeat Simple_repeat 4 114 0 250 138 0 31 chrX 3637695 3637760 -173336380 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 232 130 65 43 chrX 3637771 3637863 -173336277 + (TA)n Simple_repeat Simple_repeat 2 95 0 202 155 50 37 chrX 3637957 3638118 -173336022 + (TA)n Simple_repeat Simple_repeat 1 163 0 1107 135 0 12 chrX 3638129 3638292 -173335848 - AluJb SINE Alu -18 294 134 253 140 0 140 chrX 3638306 3638363 -173335777 + MLT2C1 LTR ERVL 354 397 0 3050 76 95 0 chrX 3638569 3638978 -173335162 - LTR7 LTR ERV1 -2 448 1 2179 106 70 14 chrX 3638978 3639347 -173334793 - HERVH LTR ERV1 0 7713 7324 1430 119 18 9 chrX 3639347 3639565 -173334575 - HERVH LTR ERV1 -1894 5819 5600 4431 138 1 1 chrX 3639566 3640228 -173333912 - HERVH LTR ERV1 -2564 5149 4488 3522 97 4 4 chrX 3640230 3640724 -173333416 - HERVH LTR ERV1 -3720 3993 3500 869 155 20 0 chrX 3640723 3640871 -173333269 - HERVH LTR ERV1 -4423 3290 3140 * 20331 92 14 23 chrX 3640865 3643880 -173330260 - HERVH LTR ERV1 -4726 2987 1 3065 73 95 0 chrX 3643882 3644291 -173329849 - LTR7 LTR ERV1 -2 448 1 1532 196 96 25 chrX 3644417 3644780 -173329360 - MLT1B LTR MaLR -1 389 1 189 0 0 0 chrX 3646931 3646952 -173327188 + (GA)n Simple_repeat Simple_repeat 2 22 0 225 323 0 0 chrX 3648266 3648328 -173325812 + L2 LINE L2 3209 3270 -2 184 280 147 87 chrX 3648715 3648865 -173325275 - MIR SINE MIR -91 171 13 470 274 144 45 chrX 3649038 3649239 -173324901 - MLT1E LTR MaLR -206 387 167 314 289 24 0 chrX 3649270 3649353 -173324787 - MLT1E LTR MaLR -457 85 1 2303 114 33 43 chrX 3649600 3649968 -173324172 - THE1B LTR MaLR 0 364 1 443 63 16 0 chrX 3650047 3650110 -173324030 + (ATG)n Simple_repeat Simple_repeat 2 65 0 199 301 217 18 chrX 3650472 3650638 -173323502 - MIR SINE MIR -1 261 63 203 284 11 23 chrX 3651401 3651489 -173322651 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 693 308 101 27 chrX 3651552 3652026 -173322114 + Tigger8 DNA MER2_type 149 657 -9 23 33 0 0 chrX 3652123 3652153 -173321987 + AT_rich Low_complexity Low_complexity 1 30 0 2807 94 8 6 chrX 3652197 3652560 -173321580 - THE1B LTR MaLR 0 364 1 1729 173 0 10 chrX 3652898 3653193 -173320947 - AluJo SINE Alu -13 299 8 24 32 0 0 chrX 3654109 3654140 -173320000 + AT_rich Low_complexity Low_complexity 1 31 0 2240 106 0 3 chrX 3654272 3654564 -173319576 - AluSc SINE Alu -18 291 1 186 234 0 21 chrX 3655522 3655569 -173318571 + MER5A DNA MER1_type 11 56 -133 257 98 0 78 chrX 3655573 3655624 -173318516 - L1P LINE L1 -729 5427 5381 * 3331 179 20 38 chrX 3655620 3655673 -173318467 + L1MA4A LINE L1 5442 5494 -809 2232 113 3 3 chrX 3655673 3655984 -173318156 + AluSx SINE Alu 1 311 -1 3331 179 20 38 chrX 3655984 3656623 -173317517 + L1MA4A LINE L1 5494 6122 -181 451 196 11 0 chrX 3656626 3656723 -173317417 + L1MA4A LINE L1 6058 6278 -1 219 250 296 0 chrX 3656735 3656823 -173317317 + MER5A DNA MER1_type 63 176 -13 1442 247 80 30 chrX 3657398 3657896 -173316244 - Charlie1b DNA MER1_type 0 523 1 254 239 0 0 chrX 3658065 3658111 -173316029 - MER45 DNA AcHobo -21 1560 1515 1305 116 5 53 chrX 3658117 3658324 -173315816 + AluJo SINE Alu 87 283 -29 268 82 20 20 chrX 3658326 3658375 -173315765 + (TA)n Simple_repeat Simple_repeat 2 50 0 323 167 12 60 chrX 3658375 3658459 -173315681 - MER45 DNA AcHobo -74 104 46 776 332 48 45 chrX 3658534 3659049 -173315091 - L1MCc LINE L1 -5245 1178 662 2097 156 47 32 chrX 3659171 3659715 -173314425 - MLT2A2 LTR ERVL 0 554 1 951 123 7 52 chrX 3659818 3659972 -173314168 - AluJo SINE Alu -9 303 157 633 159 9 9 chrX 3659972 3660079 -173314061 - AluJo SINE Alu -204 108 2 461 270 48 16 chrX 3660079 3660205 -173313935 - L1MCc LINE L1 -5953 470 341 495 233 50 133 chrX 3660217 3660616 -173313524 - LTR37A LTR ERV1 -11 415 50 253 289 164 19 chrX 3660669 3660828 -173313312 - L1MCc LINE L1 -6076 347 166 240 35 0 0 chrX 3661585 3661614 -173312526 + (T)n Simple_repeat Simple_repeat 1 29 0 1524 151 6 61 chrX 3662582 3662759 -173311381 - AluJo SINE Alu -2 310 156 2240 106 0 7 chrX 3662759 3663062 -173311078 - AluSg SINE Alu -9 301 1 1524 151 6 61 chrX 3663062 3663195 -173310945 - AluJo SINE Alu -156 156 17 449 323 25 12 chrX 3663250 3663411 -173310729 + MIR SINE MIR 31 193 -69 1804 166 3 19 chrX 3664421 3664735 -173309405 - AluJo SINE Alu -3 309 1 237 219 32 73 chrX 3665153 3665276 -173308864 - HAL1b LINE L1 -899 449 332 262 342 41 82 chrX 3665878 3666147 -173307993 + L2 LINE L2 2824 3081 -191 213 286 82 20 chrX 3666569 3666667 -173307473 - MIR SINE MIR -54 208 105 1569 185 66 44 chrX 3667347 3667709 -173306431 - MLT1A2 LTR MaLR 0 374 5 5705 84 1 1 chrX 3667757 3668448 -173305692 - LTR8 LTR ERV1 0 691 1 207 0 0 0 chrX 3669031 3669054 -173305086 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2865 92 19 17 chrX 3669054 3669459 -173304681 - L1PA10 LINE L1 -17 6151 5743 1412 232 92 22 chrX 3669582 3669807 -173304333 - MSTD LTR MaLR 0 396 133 2152 95 0 3 chrX 3669807 3670141 -173303999 + AluSg1 SINE Alu 1 333 0 1412 232 92 22 chrX 3670141 3670284 -173303856 - MSTD LTR MaLR -263 133 1 1870 161 17 0 chrX 3670299 3670598 -173303542 + AluJo SINE Alu 1 304 -8 2217 121 0 6 chrX 3670598 3670912 -173303228 + AluSx SINE Alu 1 312 0 402 250 169 7 chrX 3671358 3671506 -173302634 + MLT1J1 LTR MaLR 3 174 -272 263 209 48 48 chrX 3671732 3671837 -173302303 + MLT1J1 LTR MaLR 342 446 0 4157 156 11 0 chrX 3671972 3672600 -173301540 - MER41B LTR ERV1 0 635 1 1906 140 0 11 chrX 3672769 3673047 -173301093 + AluSx SINE Alu 2 276 -36 1209 270 108 14 chrX 3673146 3673329 -173300811 + L1MC4 LINE L1 6468 6632 -1410 3551 146 47 17 chrX 3673329 3673931 -173300209 + LTR29 LTR ERV1 1 620 -2 1209 270 108 14 chrX 3673931 3674247 -173299893 + L1MC4 LINE L1 6632 7014 -1028 2245 79 3 8 chrX 3674249 3674610 -173299530 + LTR7 LTR ERV1 1 448 -2 237 247 0 54 chrX 3674612 3674705 -173299435 + L1MC4 LINE L1 7012 7099 -943 * 240 212 15 15 chrX 3674676 3674742 -173299398 + L1MC4a LINE L1 7152 7217 -591 1577 71 5 0 chrX 3674742 3674940 -173299200 + MLT2A2 LTR ERVL 1 199 -254 3153 62 2 107 chrX 3674942 3675292 -173298848 + MLT2A1 LTR ERVL 1 386 -58 2745 85 8 3 chrX 3675292 3675645 -173298495 + THE1A LTR MaLR 1 355 0 3153 62 2 107 chrX 3675645 3675709 -173298431 + MLT2A1 LTR ERVL 386 358 -86 2375 87 3 0 chrX 3675709 3676009 -173298131 - AluSp SINE Alu -12 301 1 3153 62 2 107 chrX 3676009 3676089 -173298051 + MLT2A1 LTR ERVL 357 444 0 1112 132 22 7 chrX 3676089 3676404 -173297736 + MLT2A2 LTR ERVL 197 449 -4 330 232 0 0 chrX 3676408 3676477 -173297663 + L1MC3 LINE L1 7200 7268 -517 1318 138 24 55 chrX 3676762 3677016 -173297124 - LTR8 LTR ERV1 0 691 446 3117 136 25 34 chrX 3677019 3677549 -173296591 - MER61E LTR ERV1 -44 525 1 2798 129 4 62 chrX 3677549 3678031 -173296109 - LTR8 LTR ERV1 -237 454 1 2068 92 13 46 chrX 3678064 3678370 -173295770 - AluSq SINE Alu -15 298 3 387 279 43 63 chrX 3678727 3678981 -173295159 + L1M4 LINE L1 4399 4647 -1499 195 277 0 0 chrX 3679217 3679282 -173294858 + (TA)n Simple_repeat Simple_repeat 1 65 0 3433 148 33 11 chrX 3679743 3680285 -173293855 + MER41C LTR ERV1 1 554 0 1763 204 29 34 chrX 3680589 3681006 -173293134 - L1MB8 LINE L1 -37 6141 5727 1669 265 91 28 chrX 3680997 3681647 -173292493 - L1MB8 LINE L1 -1433 4713 4023 * 21 0 0 0 chrX 3681995 3682016 -173292124 + AT_rich Low_complexity Low_complexity 1 21 0 1621 159 61 3 chrX 3682937 3683268 -173290872 - AluJb SINE Alu 0 348 1 1546 169 83 4 chrX 3683954 3684405 -173289735 - AluJb SINE Alu 0 472 1 3015 129 11 23 chrX 3684489 3684962 -173289178 + L1PA16 LINE L1 5697 6163 -3 613 235 6 6 chrX 3685420 3685578 -173288562 + MLT2C2 LTR ERVL 6 163 -301 1935 170 37 10 chrX 3685578 3685934 -173288206 - MLT1A1 LTR MaLR 0 365 1 663 180 9 0 chrX 3685936 3686047 -173288093 + MLT2C2 LTR ERVL 161 272 -192 883 151 33 0 chrX 3686047 3686199 -173287941 - L1P4 LINE L1 -545 5621 5465 376 296 46 20 chrX 3686203 3686355 -173287785 + L1ME LINE L1 5611 5766 -355 2185 209 27 8 chrX 3686645 3687131 -173287009 + L1MC2 LINE L1 6119 7658 -95 2362 121 36 33 chrX 3687646 3688009 -173286131 - THE1B LTR MaLR 0 364 1 204 348 54 0 chrX 3688325 3688417 -173285723 + MIR3 SINE MIR 112 208 0 246 265 0 15 chrX 3688689 3688757 -173285383 + A-rich Low_complexity Low_complexity 3 69 0 1092 225 21 8 chrX 3688770 3689010 -173285130 + MLT1D LTR MaLR 261 503 -2 232 292 42 0 chrX 3689642 3689714 -173284426 + MER5A DNA MER1_type 1 75 -114 1312 197 4 8 chrX 3689716 3689970 -173284170 + AluJo SINE Alu 46 298 -14 256 159 48 0 chrX 3690194 3690257 -173283883 + L1MC4 LINE L1 6640 6705 -1337 1308 117 0 0 chrX 3690429 3690600 -173283540 + AluSq SINE Alu 21 191 -122 356 0 23 0 chrX 3690752 3690796 -173283344 + (TA)n Simple_repeat Simple_repeat 1 45 0 2805 93 11 16 chrX 3692036 3692413 -173281727 + THE1C LTR MaLR 1 375 0 257 283 0 33 chrX 3694350 3694442 -173279698 - L1MC4 LINE L1 -1339 6703 6615 459 92 0 0 chrX 3695021 3695086 -173279054 + (T)n Simple_repeat Simple_repeat 1 65 0 208 85 43 43 chrX 3695264 3695311 -173278829 + A-rich Low_complexity Low_complexity 5 51 0 317 335 188 0 chrX 3698983 3699153 -173274987 + MIR SINE MIR 1 202 -60 220 315 134 20 chrX 3699420 3699569 -173274571 + MIR SINE MIR 47 212 -50 228 250 0 0 chrX 3699789 3699849 -173274291 + (TA)n Simple_repeat Simple_repeat 2 61 0 274 355 44 40 chrX 3700330 3700581 -173273559 - L2 LINE L2 -467 2847 2596 233 128 21 0 chrX 3700623 3700670 -173273470 + GA-rich Low_complexity Low_complexity 4 51 0 971 180 120 0 chrX 3700894 3701077 -173273063 + AluJb SINE Alu 92 296 -16 217 398 8 16 chrX 3701958 3702086 -173272054 - MER5A DNA MER1_type 0 189 63 222 222 0 0 chrX 3703531 3703621 -173270519 + (TA)n Simple_repeat Simple_repeat 1 90 0 298 298 11 6 chrX 3704759 3704937 -173269203 + (TA)n Simple_repeat Simple_repeat 1 179 0 201 167 0 0 chrX 3704950 3705004 -173269136 + (TA)n Simple_repeat Simple_repeat 1 54 0 400 231 186 77 chrX 3705693 3705849 -173268291 + MER5A DNA MER1_type 11 183 -6 1208 151 0 0 chrX 3706264 3706449 -173267691 - AluJo SINE Alu -10 302 118 473 52 0 0 chrX 3706457 3706515 -173267625 + MADE1 DNA Mariner 22 79 -1 603 225 0 17 chrX 3706518 3706638 -173267502 - AluJo SINE Alu -184 118 1 1545 223 74 28 chrX 3706654 3707084 -173267056 - MLT1C LTR MaLR 0 467 18 242 118 0 0 chrX 3707431 3707465 -173266675 + MER53 DNA DNA 1 34 -155 259 259 35 0 chrX 3707476 3707561 -173266579 - MER53 DNA DNA -66 123 36 2118 134 0 3 chrX 3707561 3707866 -173266274 + AluSx SINE Alu 1 304 -8 308 292 42 73 chrX 3708330 3708418 -173265722 - L1MC/D LINE L1 -747 5399 5310 2111 115 0 0 chrX 3708418 3708706 -173265434 - L1PA13 LINE L1 -3 6160 5873 308 292 42 73 chrX 3708706 3709288 -173264852 - L1MC/D LINE L1 -836 5310 4775 1864 125 80 0 chrX 3709303 3709592 -173264548 - AluSx SINE Alu 0 312 1 669 166 0 0 chrX 3709831 3709976 -173264164 + GA-rich Low_complexity Low_complexity 1 145 0 180 77 0 0 chrX 3710747 3710773 -173263367 + (ATGGTG)n Simple_repeat Simple_repeat 3 28 0 22 56 0 0 chrX 3711309 3711345 -173262795 + AT_rich Low_complexity Low_complexity 1 36 0 1828 142 76 0 chrX 3712359 3712634 -173261506 - AluSg SINE Alu -14 296 1 991 142 108 48 chrX 3713623 3713764 -173260376 - L1MA8 LINE L1 -5 6286 6155 3125 88 12 2 chrX 3713764 3714194 -173259946 - MER57B LTR ERV1 0 434 1 991 142 108 48 chrX 3714194 3714320 -173259820 - L1MA8 LINE L1 -136 6155 6003 427 90 30 0 chrX 3714321 3714388 -173259752 + L1MA8 LINE L1 5908 5976 -336 656 238 83 0 chrX 3714761 3714942 -173259198 - MER58A DNA MER1_type 0 224 29 597 302 87 8 chrX 3715690 3715932 -173258208 + MIR SINE MIR 2 262 0 300 229 0 0 chrX 3719535 3719605 -173254535 - MER103 DNA DNA -87 79 10 358 359 48 7 chrX 3721787 3722060 -173252080 - L1MEd LINE L1 -3716 2413 2130 233 262 0 24 chrX 3722609 3722693 -173251447 - HAL1 LINE L1 -922 1585 1504 485 99 0 0 chrX 3722978 3723049 -173251091 - Alu SINE Alu -12 300 230 1135 172 0 0 chrX 3723049 3723229 -173250911 - AluJo SINE Alu -132 180 1 359 272 80 25 chrX 3723241 3723403 -173250737 - L1MEd LINE L1 -5017 1102 932 320 343 71 26 chrX 3723581 3724004 -173250136 - L1MEd LINE L1 -5300 819 378 303 337 94 30 chrX 3724159 3724361 -173249779 - L1MEd LINE L1 -5901 218 4 994 142 0 0 chrX 3725604 3725745 -173248395 - FRAM SINE Alu -24 152 12 1658 153 53 7 chrX 3725763 3726045 -173248095 - AluJo SINE Alu -17 295 1 1189 153 44 48 chrX 3726090 3726338 -173247802 + AluJo SINE Alu 41 287 -25 285 67 22 0 chrX 3727425 3727470 -173246670 + MADE1 DNA Mariner 1 46 -34 369 0 0 0 chrX 3728021 3728062 -173246078 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chrX 3728061 3728088 -173246052 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 180 0 0 0 chrX 3728549 3728569 -173245571 + (TG)n Simple_repeat Simple_repeat 1 20 0 336 24 0 0 chrX 3728572 3728613 -173245527 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chrX 3729434 3729455 -173244685 + AT_rich Low_complexity Low_complexity 1 21 0 762 253 98 83 chrX 3729544 3729991 -173244149 - MER20B DNA MER1_type -140 643 190 273 309 45 54 chrX 3729992 3730215 -173243925 - MER20B DNA MER1_type -553 230 10 985 105 0 0 chrX 3730405 3730529 -173243611 - AluSq/x SINE Alu -188 124 1 25 0 0 0 chrX 3730769 3730794 -173243346 + AT_rich Low_complexity Low_complexity 1 25 0 7783 30 1 1 chrX 3730840 3731737 -173242403 - MER11D LTR ERVK 0 897 1 1394 259 188 37 chrX 3731973 3732889 -173241251 + Charlie1 DNA MER1_type 2 2353 -408 2485 142 34 5 chrX 3733194 3733610 -173240530 - MSTA LTR MaLR 0 428 1 2091 127 7 10 chrX 3733832 3734140 -173240000 - AluSx SINE Alu -5 307 1 3909 179 42 23 chrX 3734140 3735018 -173239122 - L1MC1 LINE L1 -6 6327 5433 1945 186 13 5 chrX 3735110 3735492 -173238648 + MLT1B LTR MaLR 6 390 0 2547 51 0 0 chrX 3735524 3735819 -173238321 - AluY SINE Alu -16 295 1 23 54 0 0 chrX 3735950 3735987 -173238153 + AT_rich Low_complexity Low_complexity 1 37 0 2059 67 82 0 chrX 3736275 3736557 -173237583 - AluY SINE Alu -6 305 1 392 291 44 25 chrX 3737973 3738131 -173236009 + LTR16A1 LTR ERVL 7 167 -290 267 246 0 0 chrX 3738192 3738257 -173235883 + LTR16A1 LTR ERVL 392 456 -1 370 308 70 42 chrX 3739241 3739455 -173234685 + MIR SINE MIR 9 228 -34 298 132 66 59 chrX 3739501 3739637 -173234503 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 273 29 0 0 chrX 3739651 3739685 -173234455 + (TC)n Simple_repeat Simple_repeat 1 34 0 386 225 36 0 chrX 3739688 3739799 -173234341 - L1MC4 LINE L1 -1314 6728 6614 347 0 0 23 chrX 3739842 3739886 -173234254 + (CA)n Simple_repeat Simple_repeat 2 44 0 249 93 56 0 chrX 3740925 3740979 -173233161 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 536 90 41 28 chrX 3741011 3741156 -173232984 + (TAGA)n Simple_repeat Simple_repeat 4 150 0 331 318 120 11 chrX 3741249 3741623 -173232517 - L1ME LINE L1 -388 5765 5351 265 267 11 0 chrX 3741712 3741802 -173232338 + (TA)n Simple_repeat Simple_repeat 2 92 0 343 290 76 37 chrX 3741945 3742352 -173231788 - L1ME LINE L1 -1031 5098 4676 29 90 0 0 chrX 3742360 3742438 -173231702 + AT_rich Low_complexity Low_complexity 1 78 0 390 279 73 46 chrX 3742656 3743248 -173230892 - L1ME LINE L1 -4866 1253 646 255 279 13 0 chrX 3743791 3743870 -173230270 - L1ME LINE L1 -6011 108 29 595 300 112 11 chrX 3744124 3744411 -173229729 + L2 LINE L2 2994 3309 -4 2093 135 3 3 chrX 3744574 3744871 -173229269 + AluSx SINE Alu 1 297 -15 240 35 0 0 chrX 3744871 3744900 -173229240 + (TA)n Simple_repeat Simple_repeat 1 29 0 289 270 6 6 chrX 3744921 3745099 -173229041 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 374 257 0 12 chrX 3745115 3745286 -173228854 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 299 298 0 0 chrX 3745286 3745380 -173228760 + (TA)n Simple_repeat Simple_repeat 2 95 0 26 82 0 0 chrX 3745426 3745487 -173228653 + AT_rich Low_complexity Low_complexity 1 61 0 1294 149 57 50 chrX 3745573 3745835 -173228305 - AluJo SINE Alu -48 264 1 180 167 56 74 chrX 3745956 3746010 -173228130 + L3b LINE CR1 1250 1302 -281 22 0 0 0 chrX 3746462 3746484 -173227656 + AT_rich Low_complexity Low_complexity 1 22 0 1782 175 0 46 chrX 3746543 3746869 -173227271 - AluJb SINE Alu -1 311 1 730 213 23 50 chrX 3748552 3748756 -173225384 + L1MB2 LINE L1 5851 6050 -121 1758 178 3 33 chrX 3748756 3749055 -173225085 + L1PA15 LINE L1 5816 6104 -61 1808 133 67 25 chrX 3749055 3749415 -173224725 - THE1C LTR MaLR 0 375 1 1758 178 3 33 chrX 3749415 3749475 -173224665 + L1PA15 LINE L1 6104 6164 -1 730 213 23 50 chrX 3749475 3749491 -173224649 + L1MB2 LINE L1 6050 6065 -106 434 167 39 10 chrX 3749491 3749593 -173224547 + L1MB3 LINE L1 6078 6182 -1 1886 147 48 0 chrX 3749836 3750128 -173224012 - AluJb SINE Alu -2 310 5 265 263 0 18 chrX 3751167 3751224 -173222916 + MER58 DNA MER1_type 1 56 -2364 3047 103 33 2 chrX 3751268 3751724 -173222416 + L1PA13 LINE L1 5692 6161 -2 240 195 49 98 chrX 3751732 3751814 -173222326 + MER58 DNA MER1_type 2318 2395 -25 187 215 0 21 chrX 3753310 3753403 -173220737 + CT-rich Low_complexity Low_complexity 1 91 0 2313 111 33 18 chrX 3753432 3753828 -173220312 + L1MA2 LINE L1 5903 6304 0 279 62 24 7 chrX 3753854 3753904 -173220236 - MLT2C2 LTR ERVL -6 458 399 302 238 16 16 chrX 3753932 3754058 -173220082 + (CATA)n Simple_repeat Simple_repeat 1 126 0 314 258 0 43 chrX 3754069 3754162 -173219978 + L1MC4 LINE L1 6614 6702 -1340 230 191 0 32 chrX 3754165 3754228 -173219912 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 375 62 234 0 chrX 3754228 3754292 -173219848 + MADE1 DNA Mariner 1 79 -1 1382 196 64 57 chrX 3754327 3754623 -173219517 - MLT2C2 LTR ERVL -73 391 90 1485 171 23 48 chrX 3754623 3754933 -173219207 + AluJo SINE Alu 1 302 -10 1382 196 64 57 chrX 3754933 3755024 -173219116 - MLT2C2 LTR ERVL -374 90 1 809 120 0 0 chrX 3755059 3755184 -173218956 - L1PB3 LINE L1 -1 6153 6029 3739 107 20 118 chrX 3755284 3756123 -173218017 - L1PB3 LINE L1 -121 6033 5277 1016 234 75 51 chrX 3756752 3757210 -173216930 - MLT1C LTR MaLR -1 466 1 298 230 115 22 chrX 3757221 3757360 -173216780 - MLT1C LTR MaLR -124 343 192 1881 116 53 11 chrX 3757625 3757910 -173216230 - AluJo SINE Alu -15 297 1 438 255 99 36 chrX 3760788 3760961 -173213179 + MER20 DNA MER1_type 12 200 -19 4104 102 30 19 chrX 3760961 3761589 -173212551 - MER41B LTR ERV1 0 635 1 438 255 99 36 chrX 3761589 3761607 -173212533 + MER20 DNA MER1_type 200 215 -4 266 361 30 0 chrX 3762586 3762719 -173211421 + MIR3 SINE MIR 65 201 -7 203 217 29 0 chrX 3762890 3762959 -173211181 + (TA)n Simple_repeat Simple_repeat 1 71 0 1883 210 40 9 chrX 3762981 3763411 -173210729 - MLT2B2 LTR ERVL -39 515 3 1881 157 10 3 chrX 3764578 3764877 -173209263 - AluSx SINE Alu -11 301 1 2222 115 0 3 chrX 3765459 3765754 -173208386 - AluSx SINE Alu -18 294 1 512 131 0 0 chrX 3765980 3766064 -173208076 + L1MA2 LINE L1 6161 6244 -60 2165 134 0 0 chrX 3767841 3768183 -173205957 - AluSx SINE Alu 0 342 1 211 338 188 4 chrX 3768736 3769002 -173205138 + L2 LINE L2 2566 2880 -434 221 298 61 44 chrX 3769062 3769176 -173204964 + MER5A DNA MER1_type 74 189 0 267 54 0 0 chrX 3770971 3771008 -173203132 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 559 200 15 7 chrX 3771250 3771385 -173202755 - L1MB7 LINE L1 -218 5966 5831 230 216 82 0 chrX 3771385 3771482 -173202658 + (TA)n Simple_repeat Simple_repeat 2 106 0 3646 131 35 11 chrX 3771990 3772342 -173201798 + L1MC1 LINE L1 5693 6068 -265 373 88 176 0 chrX 3772342 3772410 -173201730 - MADE1 DNA Mariner 0 80 1 3646 131 35 11 chrX 3772410 3772681 -173201459 + L1MC1 LINE L1 6068 6331 -2 381 225 0 0 chrX 3772822 3772902 -173201238 + L1MC1 LINE L1 6240 6319 -14 1899 155 39 130 chrX 3772925 3773349 -173200791 + L1PA16 LINE L1 5651 6013 -153 2696 38 0 0 chrX 3773349 3773667 -173200473 + AluYb8 SINE Alu 1 318 0 1899 155 39 130 chrX 3773667 3773804 -173200336 + L1PA16 LINE L1 6013 6161 -5 22 0 0 0 chrX 3775427 3775449 -173198691 + AT_rich Low_complexity Low_complexity 1 22 0 183 330 80 57 chrX 3775941 3776117 -173198023 - L2 LINE L2 -268 3004 2825 1073 158 0 0 chrX 3776132 3776296 -173197844 + FRAM SINE Alu 1 163 -13 244 244 26 39 chrX 3776346 3776424 -173197716 + L2 LINE L2 2691 2767 -547 2353 125 100 5 chrX 3776428 3776819 -173197321 + MSTA LTR MaLR 1 428 0 194 232 18 0 chrX 3777109 3777165 -173196975 - L2 LINE L2 -1730 1584 1528 526 138 0 0 chrX 3777262 3777342 -173196798 - MADE1 DNA Mariner 0 80 1 360 273 114 11 chrX 3777613 3777789 -173196351 - L1MB7 LINE L1 -302 5819 5626 192 370 50 0 chrX 3778888 3778988 -173195152 + L2 LINE L2 3206 3310 -3 1955 105 42 27 chrX 3779680 3780013 -173194127 + THE1B LTR MaLR 1 338 -26 323 0 0 0 chrX 3780039 3780076 -173194064 + THE1B LTR MaLR 319 355 0 4990 107 8 16 chrX 3780766 3781025 -173193115 - L1PA13 LINE L1 -4 6159 5899 2410 60 13 10 chrX 3781025 3781326 -173192814 + AluY SINE Alu 1 302 -9 4990 107 8 16 chrX 3781326 3781861 -173192279 - L1PA13 LINE L1 -264 5899 5372 377 293 148 33 chrX 3781869 3782139 -173192001 + HAL1b LINE L1 172 472 -876 400 252 62 78 chrX 3782190 3782563 -173191577 + HAL1b LINE L1 581 947 -401 5387 133 4 13 chrX 3782789 3783698 -173190442 - L1PA13 LINE L1 0 6163 5263 1984 212 19 33 chrX 3784157 3784642 -173189498 - LTR31 LTR ERV1 -15 604 127 1707 110 0 0 chrX 3785869 3786097 -173188043 + AluSc SINE Alu 73 300 -9 3261 82 22 2 chrX 3786209 3786661 -173187479 + L1PA10 LINE L1 5695 6155 -13 199 359 0 0 chrX 3787484 3787548 -173186592 - L2 LINE L2 0 3272 3209 2250 81 3 0 chrX 3787753 3788038 -173186102 + AluY SINE Alu 1 286 -25 216 0 0 0 chrX 3788041 3788065 -173186075 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 890 118 0 7 chrX 3788182 3788326 -173185814 + (TTC)n Simple_repeat Simple_repeat 3 145 0 652 183 0 9 chrX 3788328 3788443 -173185697 - FLAM_C SINE Alu -29 114 1 362 214 15 20 chrX 3788463 3788660 -173185480 + CT-rich Low_complexity Low_complexity 1 195 0 376 329 76 8 chrX 3789467 3789652 -173184488 + MIR SINE MIR 15 212 -50 2170 119 23 52 chrX 3789724 3790110 -173184030 - THE1C LTR MaLR 0 375 1 282 301 29 10 chrX 3790807 3790910 -173183230 + MIR3 SINE MIR 87 191 -17 1759 234 59 25 chrX 3791292 3791780 -173182360 + MLT1D LTR MaLR 1 505 0 2217 59 42 3 chrX 3792859 3793148 -173180992 + AluY SINE Alu 1 300 -11 24 32 0 0 chrX 3793721 3793752 -173180388 + AT_rich Low_complexity Low_complexity 1 31 0 198 263 147 21 chrX 3794539 3794635 -173179505 + MIR SINE MIR 63 171 -37 386 176 0 0 chrX 3794671 3794745 -173179395 - MADE1 DNA Mariner 0 80 7 372 222 94 26 chrX 3794916 3795033 -173179107 + L2 LINE L2 3189 3313 0 385 242 91 0 chrX 3795036 3795135 -173179005 + MER3 DNA MER1_type 1 108 -101 1683 112 28 17 chrX 3795148 3795435 -173178705 - THE1C LTR MaLR 0 375 86 278 115 19 0 chrX 3795551 3795603 -173178537 + (TA)n Simple_repeat Simple_repeat 1 53 0 534 213 0 55 chrX 3796254 3796381 -173177759 - FLAM_A SINE Alu -9 133 14 1093 235 4 16 chrX 3796917 3797168 -173176972 - AluJo SINE Alu -24 288 41 225 278 81 40 chrX 3797182 3797380 -173176760 - L1M4 LINE L1 -1200 4946 4741 2068 155 0 0 chrX 3797726 3798035 -173176105 + AluJo SINE Alu 1 309 -3 181 191 0 48 chrX 3798141 3798204 -173175936 + GA-rich Low_complexity Low_complexity 2 61 0 257 73 0 24 chrX 3798808 3798849 -173175291 + (TAA)n Simple_repeat Simple_repeat 2 41 0 978 206 42 35 chrX 3798985 3799173 -173174967 + MER33 DNA MER1_type 5 197 -2388 2502 148 21 23 chrX 3799173 3799606 -173174534 - Tigger2a DNA MER2_type -1 433 2 978 206 42 35 chrX 3799606 3799727 -173174413 + MER33 DNA MER1_type 197 316 -8 987 411 0 48 chrX 3799763 3800079 -173174061 + AluJo SINE Alu 1 301 -1 1578 222 128 18 chrX 3800270 3800600 -173173540 + MLT1D LTR MaLR 1 396 -109 3632 128 22 21 chrX 3800600 3800971 -173173169 + L1PA16 LINE L1 5535 5909 -257 2104 114 19 56 chrX 3800971 3801349 -173172791 + THE1B LTR MaLR 1 364 0 3632 128 22 21 chrX 3801349 3801608 -173172532 + L1PA16 LINE L1 5909 6166 0 1578 222 128 18 chrX 3801608 3801732 -173172408 + MLT1D LTR MaLR 396 505 0 505 313 7 0 chrX 3801826 3801970 -173172170 - MER63A DNA MER1_type -9 201 57 510 303 0 13 chrX 3802896 3803048 -173171092 + MER63 DNA MER1_type 10 785 -277 4498 137 31 22 chrX 3803149 3804010 -173170130 + L1PB4 LINE L1 5276 6144 -12 26 0 0 0 chrX 3804137 3804163 -173169977 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chrX 3805041 3805067 -173169073 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 637 249 15 34 chrX 3806349 3806554 -173167586 - MER20 DNA MER1_type -3 216 16 1868 135 56 31 chrX 3806820 3807175 -173166965 + THE1B LTR MaLR 1 364 0 2143 118 0 14 chrX 3807468 3807764 -173166376 + AluSx SINE Alu 1 292 -20 229 163 82 0 chrX 3808319 3808368 -173165772 - LTR16A1 LTR ERVL 0 457 405 441 259 0 17 chrX 3808383 3808499 -173165641 - MIR SINE MIR 0 262 149 1653 197 15 6 chrX 3808500 3808840 -173165300 - L1PB4 LINE L1 -6 6150 5808 798 73 0 0 chrX 3808844 3808954 -173165186 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 350 205 3 0 chrX 3809684 3809759 -173164381 - L1M3 LINE L1 -355 5811 5735 21 0 0 0 chrX 3810147 3810168 -173163972 + AT_rich Low_complexity Low_complexity 1 21 0 335 236 28 0 chrX 3810311 3810383 -173163757 + MER58A DNA MER1_type 3 76 -31 195 307 68 34 chrX 3810549 3810637 -173163503 - MIR SINE MIR -63 145 55 1596 200 13 27 chrX 3811433 3811733 -173162407 + AluJo SINE Alu 1 296 -16 1456 183 173 90 chrX 3812509 3813287 -173160853 - LTR1B LTR ERV1 0 1020 1 1686 191 10 0 chrX 3814200 3814488 -173159652 + AluJb SINE Alu 1 291 -21 287 299 114 30 chrX 3814937 3815104 -173159036 - MIR SINE MIR -30 232 52 439 324 0 7 chrX 3818974 3819119 -173155021 + (CATATA)n Simple_repeat Simple_repeat 4 147 0 615 256 0 0 chrX 3819129 3819305 -173154835 + (TA)n Simple_repeat Simple_repeat 2 177 0 661 218 111 70 chrX 3819387 3819818 -173154322 + L1MC4 LINE L1 7447 7895 -147 290 200 47 0 chrX 3819827 3819912 -173154228 + (TA)n Simple_repeat Simple_repeat 2 90 0 391 197 24 39 chrX 3819941 3820068 -173154072 + L1MC4 LINE L1 7918 8042 0 207 350 14 70 chrX 3820361 3820504 -173153636 + MIR3 SINE MIR 2 136 -72 1183 139 8 48 chrX 3820701 3820953 -173153187 - L1MA5A LINE L1 -2 6295 6054 3027 23 0 0 chrX 3821444 3821795 -173152345 - L1PA4 LINE L1 -3 6152 5802 1525 217 15 35 chrX 3822300 3822756 -173151384 + L1MB8 LINE L1 5727 6173 -5 215 271 0 0 chrX 3823510 3823558 -173150582 + (TA)n Simple_repeat Simple_repeat 2 49 0 467 110 0 0 chrX 3823905 3823978 -173150162 - L1PA16 LINE L1 -3 6163 6091 1055 255 143 37 chrX 3824102 3824611 -173149529 + MLT1E LTR MaLR 19 581 -12 1758 161 28 24 chrX 3824613 3824904 -173149236 + AluJo SINE Alu 1 292 -20 753 157 8 15 chrX 3825357 3825491 -173148649 + AluJ SINE Alu 1 133 -179 736 188 8 0 chrX 3825886 3826014 -173148126 + FLAM_A SINE Alu 1 129 -4 189 350 51 35 chrX 3826127 3826312 -173147828 - MIR SINE MIR -17 245 57 2198 128 0 0 chrX 3826823 3827119 -173147021 + AluSx SINE Alu 1 296 -16 1741 160 23 23 chrX 3827220 3827564 -173146576 - MLT1B LTR MaLR -46 344 1 306 123 0 0 chrX 3828005 3828062 -173146078 + (GA)n Simple_repeat Simple_repeat 2 58 0 387 217 66 0 chrX 3828707 3828813 -173145327 + L1MB8 LINE L1 6060 6172 -6 231 180 0 0 chrX 3828816 3828826 -173145314 + (TA)n Simple_repeat Simple_repeat 1 10 -40 3001 58 3 0 chrX 3828826 3829207 -173144933 - L1PA7 LINE L1 -7 6147 5766 231 180 0 0 chrX 3829207 3829246 -173144894 + (TA)n Simple_repeat Simple_repeat 9 50 0 402 327 105 34 chrX 3829513 3829895 -173144245 - L1ME LINE L1 -446 5675 5267 27 29 0 0 chrX 3830469 3830503 -173143637 + AT_rich Low_complexity Low_complexity 1 34 0 250 83 0 0 chrX 3830919 3830955 -173143185 - MADE1 DNA Mariner 0 80 45 325 292 42 31 chrX 3831086 3831278 -173142862 + L1ME LINE L1 5064 5257 -889 349 336 16 8 chrX 3831285 3831529 -173142611 + L1ME LINE L1 5263 5508 -656 703 239 24 24 chrX 3831536 3831745 -173142395 + MER3 DNA MER1_type 1 209 0 1025 139 63 0 chrX 3831869 3832027 -173142113 + AluJ SINE Alu 141 308 -4 922 98 50 7 chrX 3832167 3832433 -173141707 + GA-rich Low_complexity Low_complexity 1 277 0 249 98 0 0 chrX 3832702 3832743 -173141397 + (CA)n Simple_repeat Simple_repeat 1 41 0 1209 196 158 117 chrX 3832760 3833573 -173140567 - LTR1B LTR ERV1 0 1020 1 531 194 78 0 chrX 3834428 3834531 -173139609 - AluJo SINE Alu -21 291 181 719 206 28 39 chrX 3834631 3834811 -173139329 - AluJo SINE Alu -132 180 3 574 182 0 0 chrX 3834844 3834954 -173139186 - L1MB1 LINE L1 -40 6128 6019 963 254 103 67 chrX 3835391 3835898 -173138242 - MLT1E2 LTR MaLR -22 604 80 421 144 39 19 chrX 3836288 3836392 -173137748 + MER4C LTR ERV1 1 106 -359 547 192 45 81 chrX 3836478 3836747 -173137393 + LTR59 LTR ERV1 136 377 -220 * 619 234 108 73 chrX 3836746 3837063 -173137077 + MER4C LTR ERV1 276 465 0 213 276 17 0 chrX 3837335 3837393 -173136747 + L2 LINE L2 3250 3308 -5 350 258 0 0 chrX 3838154 3838251 -173135889 - MLT1E2 LTR MaLR 0 626 530 835 176 0 121 chrX 3838251 3838450 -173135690 + AluJo SINE Alu 86 260 -52 1758 257 15 39 chrX 3838504 3838960 -173135180 - MLT1E2 LTR MaLR -98 528 85 1875 152 35 70 chrX 3838960 3839362 -173134778 - MLT1B LTR MaLR 0 390 3 1758 257 15 39 chrX 3839362 3839446 -173134694 - MLT1E2 LTR MaLR -541 85 1 2184 119 20 0 chrX 3839656 3839951 -173134189 - AluSx SINE Alu -9 303 3 333 0 0 0 chrX 3840001 3840038 -173134102 + (A)n Simple_repeat Simple_repeat 1 37 0 600 271 35 15 chrX 3840131 3840334 -173133806 - MER3 DNA MER1_type 0 209 3 870 238 5 0 chrX 3841927 3842116 -173132024 - MER58A DNA MER1_type 0 224 35 2751 194 91 56 chrX 3842141 3842957 -173131183 - MER21B LTR ERV1 -19 844 1 225 29 0 59 chrX 3843810 3843844 -173130296 - L1P4 LINE L1 -439 5724 5693 1091 218 153 0 chrX 3844175 3844436 -173129704 - AluJo SINE Alu -1 311 11 1033 186 134 0 chrX 3844472 3844666 -173129474 - AluJo SINE Alu -92 220 1 184 328 0 30 chrX 3845080 3845147 -173128993 - MIR SINE MIR -73 189 125 1450 184 26 45 chrX 3845201 3845511 -173128629 + AluJo SINE Alu 1 304 -8 35 0 0 0 chrX 3845569 3845604 -173128536 + AT_rich Low_complexity Low_complexity 1 35 0 406 287 109 17 chrX 3845665 3845839 -173128301 + MIR SINE MIR 59 248 -14 396 288 30 0 chrX 3845853 3845985 -173128155 - L2 LINE L2 -1018 2296 2161 1945 163 40 36 chrX 3846019 3846568 -173127572 - MLT2A2 LTR ERVL 0 554 1 1184 249 31 62 chrX 3846716 3847015 -173127125 - MLT1C LTR MaLR 0 467 160 1932 134 0 23 chrX 3847015 3847146 -173126994 + AluSx SINE Alu 1 133 -179 450 94 0 0 chrX 3847146 3847210 -173126930 + (TA)n Simple_repeat Simple_repeat 2 65 0 2369 87 0 3 chrX 3847218 3847516 -173126624 + AluSx SINE Alu 5 301 -11 1932 134 0 23 chrX 3847516 3847682 -173126458 + AluSx SINE Alu 140 300 -12 1184 249 31 62 chrX 3847682 3847864 -173126276 - MLT1C LTR MaLR -307 160 1 2470 62 0 0 chrX 3849577 3849869 -173124271 + AluY SINE Alu 1 292 -19 883 218 50 50 chrX 3849967 3850035 -173124105 + MER58B DNA MER1_type 79 146 -2274 3863 145 35 22 chrX 3850035 3850752 -173123388 + L1MC1 LINE L1 5606 6331 -2 883 218 50 50 chrX 3850752 3850945 -173123195 + MER58B DNA MER1_type 145 340 -1 874 264 123 36 chrX 3851417 3851529 -173122611 + MLT2F LTR ERVL 5 106 -557 4301 153 39 20 chrX 3851529 3852294 -173121846 + LTR39 LTR ERV1 4 783 0 874 264 123 36 chrX 3852294 3852628 -173121512 + MLT2F LTR ERVL 106 490 -173 3126 99 4 25 chrX 3852647 3853122 -173121018 + MER4C LTR ERV1 1 465 0 1595 213 71 69 chrX 3853657 3854292 -173119848 - MER92B LTR ERV1 0 636 1 261 0 0 0 chrX 3854370 3854399 -173119741 + (CA)n Simple_repeat Simple_repeat 2 30 0 271 263 38 12 chrX 3854485 3854565 -173119575 - MIR SINE MIR -93 169 88 361 130 30 20 chrX 3856836 3856936 -173117204 + (TA)n Simple_repeat Simple_repeat 1 101 0 358 306 88 26 chrX 3857883 3858076 -173116064 - MIR SINE MIR -43 219 15 1968 159 7 7 chrX 3858377 3858685 -173115455 - AluJo SINE Alu -4 308 1 34 42 0 0 chrX 3858770 3858818 -173115322 + AT_rich Low_complexity Low_complexity 1 48 0 619 208 15 0 chrX 3859072 3859202 -173114938 + MER7A DNA MER2_type 1 130 -216 1401 168 40 0 chrX 3859239 3859513 -173114627 + MER7A DNA MER2_type 63 345 -1 3101 147 29 11 chrX 3859727 3860285 -173113855 + LTR24B LTR ERV1 4 571 -5 340 132 26 66 chrX 3860282 3860358 -173113782 + MLT1D LTR MaLR 13 85 -420 * 1483 204 32 24 chrX 3860637 3861014 -173113126 + MLT1D LTR MaLR 118 497 -8 255 318 24 12 chrX 3861375 3861460 -173112680 + MER5A DNA MER1_type 18 103 -86 440 205 0 41 chrX 3861532 3861673 -173112467 - MER5B DNA MER1_type -1 177 2 231 365 21 21 chrX 3862818 3862963 -173111177 + L2 LINE L2 3169 3313 0 756 191 0 0 chrX 3863249 3863427 -173110713 + (ATG)n Simple_repeat Simple_repeat 2 179 0 664 189 0 38 chrX 3863395 3863580 -173110560 + (ATGGTG)n Simple_repeat Simple_repeat 3 180 0 * 943 180 2 6 chrX 3863576 3864125 -173110015 + (ATG)n Simple_repeat Simple_repeat 1 546 0 809 157 117 5 chrX 3864421 3864618 -173109522 + L1MA8 LINE L1 5822 6040 -251 4397 138 26 21 chrX 3864812 3865616 -173108524 - L1MA4 LINE L1 -1 6299 5492 262 259 0 12 chrX 3865885 3865966 -173108174 - LTR16B LTR ERVL -10 454 375 661 209 5 32 chrX 3866004 3866033 -173108107 - L1MB8 LINE L1 -247 5931 5903 9066 39 2 2 chrX 3866033 3867104 -173107036 + MER11C LTR ERVK 1 1071 0 661 209 5 32 chrX 3867104 3867261 -173106879 - L1MB8 LINE L1 -275 5903 5750 811 310 37 13 chrX 3867719 3868093 -173106047 + L1ME LINE L1 497 879 -5651 379 298 44 25 chrX 3868291 3868449 -173105691 - LTR16A1 LTR ERVL -290 167 7 403 123 0 41 chrX 3868680 3868753 -173105387 - MER41D LTR ERV1 0 557 488 7719 23 0 0 chrX 3868765 3870036 -173104104 - L1PA3 LINE L1 -3 6152 4882 1399 110 5 0 chrX 3870090 3870299 -173103841 - MER41D LTR ERV1 -347 210 1 411 21 0 0 chrX 3870319 3870367 -173103773 + (CA)n Simple_repeat Simple_repeat 1 48 0 710 267 72 52 chrX 3870397 3871262 -173102878 + L1ME LINE L1 1047 1955 -4585 618 100 45 0 chrX 3871564 3871674 -173102466 + L1PA13 LINE L1 6049 6163 0 267 286 112 0 chrX 3871724 3871920 -173102220 + L1ME LINE L1 2525 2742 -3798 331 222 11 22 chrX 3871922 3872012 -173102128 + L1ME2 LINE L1 5656 5744 -420 381 158 105 0 chrX 3872013 3872089 -173102051 + L1M3 LINE L1 5703 5786 -548 * 399 246 45 102 chrX 3872081 3872325 -173101815 + L1ME2 LINE L1 5905 6134 -30 613 90 0 20 chrX 3872349 3872449 -173101691 + (TTCC)n Simple_repeat Simple_repeat 2 99 0 2143 137 0 0 chrX 3872449 3872762 -173101378 - AluSq SINE Alu 0 313 1 212 233 0 0 chrX 3872902 3872945 -173101195 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 332 163 0 25 chrX 3873457 3873537 -173100603 + L1MA4 LINE L1 6222 6299 -1 24 0 0 0 chrX 3873539 3873563 -173100577 + AT_rich Low_complexity Low_complexity 1 24 0 2004 140 0 23 chrX 3874297 3874604 -173099536 - AluSx SINE Alu -12 300 1 1376 147 23 34 chrX 3875333 3875599 -173098541 - LTR8 LTR ERV1 0 691 429 1500 141 7 46 chrX 3875620 3875904 -173098236 - LTR8 LTR ERV1 -418 273 1 270 0 0 0 chrX 3876110 3876140 -173098000 + (CA)n Simple_repeat Simple_repeat 2 31 0 541 259 30 51 chrX 3876371 3876568 -173097572 - MIR SINE MIR 0 262 70 518 198 16 16 chrX 3879249 3879370 -173094770 - MLT1E LTR MaLR -2 591 471 534 240 19 28 chrX 3879996 3880159 -173093981 + MLT1E LTR MaLR 12 168 -374 1902 154 7 0 chrX 3880527 3880820 -173093320 + AluJb SINE Alu 1 295 -17 640 149 9 0 chrX 3880899 3881013 -173093127 - L1MB8 LINE L1 -1 6177 6063 381 294 98 33 chrX 3881194 3881378 -173092762 - MIR SINE MIR -18 244 49 1968 133 10 10 chrX 3881401 3881702 -173092438 - AluSx SINE Alu -2 310 10 761 277 81 14 chrX 3881799 3882095 -173092045 - MLT1F1 LTR MaLR 0 567 252 1719 187 18 22 chrX 3882349 3882736 -173091404 - L1MA4 LINE L1 -23 6133 5767 2183 133 28 17 chrX 3882773 3883133 -173091007 - THE1B LTR MaLR 0 364 1 1993 99 60 7 chrX 3883879 3884162 -173089978 + AluSq SINE Alu 1 298 -15 1217 318 92 46 chrX 3884457 3885224 -173088916 + L2 LINE L2 2358 3168 -145 2576 98 19 3 chrX 3885224 3885593 -173088547 + THE1C LTR MaLR 1 375 0 1217 318 92 46 chrX 3885593 3885741 -173088399 + L2 LINE L2 3168 3308 -5 2730 148 140 27 chrX 3885746 3886374 -173087766 + LTR34 LTR ERV1 1 699 0 242 211 19 0 chrX 3886471 3886523 -173087617 - AluJ/FLAM SINE Alu -233 69 17 759 247 6 0 chrX 3887147 3887329 -173086811 + MER58A DNA MER1_type 41 223 -1 24 67 0 0 chrX 3887465 3887510 -173086630 + AT_rich Low_complexity Low_complexity 1 45 0 2300 106 8 65 chrX 3890266 3890652 -173083488 - THE1B LTR MaLR 0 364 1 879 188 28 17 chrX 3890780 3890961 -173083179 + L1PA16 LINE L1 5679 5861 -305 1655 183 28 13 chrX 3890961 3891345 -173082795 + L1PA16 LINE L1 5763 6157 -9 188 108 0 27 chrX 3892085 3892122 -173082018 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 366 121 0 0 chrX 3892144 3892210 -173081930 + (GGAA)n Simple_repeat Simple_repeat 2 67 0 2014 150 0 0 chrX 3892254 3892548 -173081592 - AluJb SINE Alu -18 294 1 361 335 64 62 chrX 3892840 3893216 -173080924 + L2 LINE L2 2716 3100 -213 2332 107 0 0 chrX 3893216 3893525 -173080615 - AluSc SINE Alu 0 309 1 361 335 64 62 chrX 3893525 3893731 -173080409 + L2 LINE L2 3100 3304 -9 3820 133 20 3 chrX 3893916 3894555 -173079585 - MER39B LTR ERV1 0 653 4 837 213 15 15 chrX 3895572 3895769 -173078371 - MER58A DNA MER1_type -1 223 27 360 0 0 0 chrX 3895880 3895920 -173078220 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2269 119 0 3 chrX 3896066 3896378 -173077762 - AluSx SINE Alu -1 311 1 1929 177 3 0 chrX 3896594 3896905 -173077235 + AluJo SINE Alu 1 312 0 569 190 25 8 chrX 3896984 3897146 -173076994 - AluSg/x SINE Alu 0 322 159 23 0 0 0 chrX 3899626 3899649 -173074491 + AT_rich Low_complexity Low_complexity 1 23 0 531 140 47 5 chrX 3899686 3899795 -173074345 - L1MA9 LINE L1 -11 6280 6169 499 175 19 62 chrX 3899958 3900118 -173074022 + L1P LINE L1 3840 3992 -2154 607 288 58 10 chrX 3900299 3900504 -173073636 - MER58A DNA MER1_type -9 215 1 328 267 65 65 chrX 3900517 3900764 -173073376 + L1M4 LINE L1 2789 3035 -3111 1320 223 3 3 chrX 3900811 3901098 -173073042 + AluY SINE Alu 1 287 -24 1515 220 73 45 chrX 4001374 4001837 -172972303 - MER39 LTR ERV1 0 707 232 1339 182 171 62 chrX 4002409 4002864 -172971276 - MLT1D LTR MaLR 0 505 1 240 303 41 78 chrX 4003019 4003263 -172970877 + L2 LINE L2 2268 2502 -812 1641 180 14 17 chrX 4003288 4003577 -172970563 + AluJo SINE Alu 1 288 -24 25 0 0 0 chrX 4003580 4003605 -172970535 + AT_rich Low_complexity Low_complexity 1 25 0 274 404 18 18 chrX 4003835 4004060 -172970080 + L2 LINE L2 2560 2784 -530 871 144 0 0 chrX 4004099 4004217 -172969923 + FLAM_C SINE Alu 1 118 -25 2034 133 10 0 chrX 4004400 4004700 -172969440 + AluSx SINE Alu 1 303 -9 2135 161 31 3 chrX 4004929 4005284 -172968856 + MER47A DNA MER2_type 1 365 -1 1700 171 22 0 chrX 4005551 4005826 -172968314 - AluJb SINE Alu -31 281 1 238 205 24 0 chrX 4005947 4006030 -172968110 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 519 128 35 37 chrX 4006129 4006399 -172967741 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 246 194 83 0 chrX 4006559 4006631 -172967509 + L1MC4 LINE L1 6618 6695 -1347 180 0 0 0 chrX 4006631 4006651 -172967489 + (TG)n Simple_repeat Simple_repeat 2 21 0 264 230 45 126 chrX 4006724 4006946 -172967194 - L1ME4a LINE L1 -157 5964 5761 1626 201 3 7 chrX 4008274 4008568 -172965572 - AluJo SINE Alu -19 293 1 846 178 0 0 chrX 4008568 4008703 -172965437 - AluJo SINE Alu -177 135 1 668 256 22 44 chrX 4009162 4009422 -172964718 + MLT1E LTR MaLR 13 233 -391 1903 122 32 10 chrX 4009431 4009801 -172964339 - L1PB4 LINE L1 -598 5558 5184 3984 125 7 12 chrX 4009801 4010393 -172963747 + L1PB4 LINE L1 5565 6154 -2 814 269 31 59 chrX 4010425 4010711 -172963429 + MLT1E LTR MaLR 206 483 -110 2068 130 93 17 chrX 4010716 4011069 -172963071 - MLT1B LTR MaLR -7 383 4 647 177 9 18 chrX 4011073 4011186 -172962954 + MLT1E LTR MaLR 479 590 -3 1374 157 8 0 chrX 4011501 4011743 -172962397 + L1M2 LINE L1 5550 5793 -519 322 279 47 0 chrX 4011778 4011864 -172962276 + L1MC4 LINE L1 6614 6703 -1339 1145 141 0 18 chrX 4011973 4012143 -172961997 - AluJo SINE Alu -145 167 1 190 369 117 0 chrX 4012698 4012809 -172961331 - MIR SINE MIR -69 139 16 1963 126 0 20 chrX 4013991 4014192 -172959948 - AluSq SINE Alu 0 313 295 363 23 0 0 chrX 4014192 4014236 -172959904 + (TTATG)n Simple_repeat Simple_repeat 2 45 0 1963 126 0 20 chrX 4014236 4014526 -172959614 - AluSq SINE Alu -18 295 1 290 331 153 0 chrX 4014614 4014738 -172959402 + MIR SINE MIR 11 153 -109 209 229 0 0 chrX 4014755 4014803 -172959337 - MIR SINE MIR -109 153 106 274 327 9 19 chrX 4014872 4014979 -172959161 + MIR SINE MIR 100 205 -57 1760 75 9 0 chrX 4017269 4017497 -172956643 - AluSp SINE Alu -8 305 76 1762 176 7 3 chrX 4018043 4018333 -172955807 + AluJo SINE Alu 1 291 -21 276 198 85 38 chrX 4018374 4018480 -172955660 - L1ME LINE L1 -298 5823 5713 2233 146 22 3 chrX 4018706 4019063 -172955077 + THE1B LTR MaLR 1 364 0 2144 235 5 43 chrX 4019282 4019840 -172954300 - MLT1F LTR MaLR 0 542 6 21 36 0 0 chrX 4020059 4020087 -172954053 + AT_rich Low_complexity Low_complexity 1 28 0 252 149 0 0 chrX 4020390 4020437 -172953703 + (TC)n Simple_repeat Simple_repeat 2 48 0 1508 243 40 50 chrX 4021342 4021861 -172952279 + LTR40a LTR ERVL 6 519 0 579 164 10 0 chrX 4021898 4022002 -172952138 + Tigger3(Golem) DNA MER2_type 1 105 -2924 * 3279 143 98 22 chrX 4021995 4022269 -172951871 + Tigger3(Golem) DNA MER2_type 2283 2535 -494 2057 120 40 7 chrX 4022269 4022570 -172951570 + AluSx SINE Alu 1 311 -1 3279 143 98 22 chrX 4022570 4022989 -172951151 + Tigger3(Golem) DNA MER2_type 2535 3029 0 611 163 42 226 chrX 4023624 4023874 -172950266 + MLT1A1 LTR MaLR 1 159 -215 518 100 0 25 chrX 4023874 4023954 -172950186 + MADE1 DNA Mariner 3 80 0 611 163 42 226 chrX 4023954 4024084 -172950056 + MLT1A1 LTR MaLR 159 311 -63 555 308 28 34 chrX 4025039 4025155 -172948985 - L1ME3A LINE L1 -33 6137 6022 2377 141 3 3 chrX 4025155 4025530 -172948610 - THE1C LTR MaLR 0 375 1 555 308 28 34 chrX 4025530 4025767 -172948373 - L1ME3A LINE L1 -148 6022 5786 1084 275 65 14 chrX 4026418 4026851 -172947289 - L1ME3A LINE L1 -8 6162 5708 244 175 70 0 chrX 4026853 4026910 -172947230 - MSTA LTR MaLR 0 428 368 23 0 0 0 chrX 4026934 4026957 -172947183 + AT_rich Low_complexity Low_complexity 1 23 0 2271 130 10 55 chrX 4026961 4027361 -172946779 - MSTA LTR MaLR -46 382 1 688 267 6 68 chrX 4027362 4027714 -172946426 - L1ME3A LINE L1 -461 5709 5380 367 98 0 0 chrX 4027715 4027766 -172946374 - MSTB LTR MaLR 0 426 376 1339 167 18 13 chrX 4027768 4027995 -172946145 - AluJo SINE Alu -84 228 1 334 301 27 48 chrX 4030520 4030666 -172943474 - MIR SINE MIR 0 262 120 2212 130 16 19 chrX 4030795 4031171 -172942969 + THE1C LTR MaLR 1 375 0 245 143 0 0 chrX 4031269 4031304 -172942836 - MER5A DNA MER1_type 0 189 155 1172 244 24 3 chrX 4031313 4031604 -172942536 - MER58B DNA MER1_type -2 339 43 2805 128 15 2 chrX 4031610 4032071 -172942069 - MER41B LTR ERV1 0 635 169 348 228 26 26 chrX 4032241 4032355 -172941785 + Charlie8 DNA MER1_type 77 190 -2227 1859 132 140 13 chrX 4032422 4032800 -172941340 - MSTA LTR MaLR 0 428 3 591 225 42 37 chrX 4032957 4033148 -172940992 + Tigger2 DNA MER2_type 1 192 -2526 696 187 22 14 chrX 4033376 4033515 -172940625 + Tigger2 DNA MER2_type 2579 2718 0 721 170 24 48 chrX 4033561 4033726 -172940414 - MLT1A1 LTR MaLR 0 365 217 4445 139 111 98 chrX 4033726 4035250 -172938890 - pTR5 LTR ERV1 -8 2430 714 444 209 122 0 chrX 4035261 4035376 -172938764 - MLT1A1 LTR MaLR -218 147 19 301 329 44 29 chrX 4035387 4035524 -172938616 - MIR SINE MIR -104 158 20 226 210 43 29 chrX 4036149 4036287 -172937853 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 284 206 0 29 chrX 4036371 4036507 -172937633 + (TA)n Simple_repeat Simple_repeat 1 132 0 1780 168 46 0 chrX 4036510 4036838 -172937302 - MER7A DNA MER2_type -5 341 1 2359 121 84 74 chrX 4036917 4037508 -172936632 - MER4B LTR ERV1 0 779 26 256 337 22 0 chrX 4037590 4037682 -172936458 - MIR SINE MIR -104 158 65 348 178 28 0 chrX 4037742 4037849 -172936291 + (TA)n Simple_repeat Simple_repeat 2 111 0 231 146 0 0 chrX 4038413 4038454 -172935686 + (T)n Simple_repeat Simple_repeat 1 41 0 1520 180 6 40 chrX 4039774 4040101 -172934039 + LTR8 LTR ERV1 1 316 -375 1163 104 0 0 chrX 4040134 4040297 -172933843 + LTR8 LTR ERV1 526 688 -3 1206 223 177 9 chrX 4040702 4041268 -172932872 + L1ME2 LINE L1 5198 5851 -313 780 234 9 22 chrX 4041294 4041520 -172932620 + L1ME2 LINE L1 5923 6145 -19 771 124 99 0 chrX 4041808 4041949 -172932191 + FLAM_C SINE Alu 1 153 0 2472 46 23 0 chrX 4042943 4043247 -172930893 - AluY SINE Alu 0 311 1 527 83 83 12 chrX 4043308 4043476 -172930664 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 493 73 85 24 chrX 4043489 4043654 -172930486 + (TAGA)n Simple_repeat Simple_repeat 1 175 0 438 259 83 105 chrX 4043654 4044206 -172929934 + MER34 LTR ERV1 1 540 -2 587 215 0 6 chrX 4044217 4044380 -172929760 + (TAGA)n Simple_repeat Simple_repeat 1 162 0 2021 127 34 3 chrX 4044875 4045167 -172928973 + AluJo SINE Alu 6 306 -6 218 319 21 106 chrX 4045171 4045312 -172928828 + MIR3 SINE MIR 3 131 -77 2224 117 3 0 chrX 4045806 4046104 -172928036 + AluSx SINE Alu 1 299 -13 24 0 0 0 chrX 4047402 4047426 -172926714 + AT_rich Low_complexity Low_complexity 1 24 0 1289 202 8 4 chrX 4047440 4047678 -172926462 - AluJb SINE Alu -73 239 1 359 167 97 0 chrX 4047785 4047857 -172926283 - MER5B DNA MER1_type 0 178 100 273 143 0 18 chrX 4048268 4048324 -172925816 - MLT2B3 LTR ERVL 0 554 500 201 39 0 0 chrX 4048325 4048351 -172925789 + (GA)n Simple_repeat Simple_repeat 1 26 0 336 77 0 0 chrX 4048365 4048417 -172925723 + (CATA)n Simple_repeat Simple_repeat 2 53 0 2391 83 0 0 chrX 4048419 4048720 -172925420 + AluY SINE Alu 4 304 -7 364 128 11 69 chrX 4048774 4048962 -172925178 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 569 89 13 68 chrX 4049007 4049389 -172924751 + (TAGA)n Simple_repeat Simple_repeat 1 360 0 2265 228 23 2 chrX 4049389 4049918 -172924222 - MLT2B3 LTR ERVL -19 506 1 1681 163 8 73 chrX 4050172 4050571 -172923569 + L1MB3 LINE L1 5767 6139 -44 846 180 0 0 chrX 4050578 4050717 -172923423 + FRAM SINE Alu 13 151 -25 308 21 0 21 chrX 4050726 4050773 -172923367 + L1MB3 LINE L1 6129 6174 -9 427 226 32 106 chrX 4051027 4051410 -172922730 + MER34 LTR ERV1 216 542 0 3492 109 25 15 chrX 4051518 4052040 -172922100 - MER1A DNA MER1_type 0 527 1 354 370 68 48 chrX 4053345 4053726 -172920414 + L2 LINE L2 2681 3063 -209 2138 133 3 0 chrX 4054081 4054389 -172919751 + AluSx SINE Alu 1 309 -3 3537 143 11 24 chrX 4055289 4055951 -172918189 - MER39B LTR ERV1 0 653 1 32 26 0 0 chrX 4056360 4056399 -172917741 + AT_rich Low_complexity Low_complexity 1 39 0 1049 156 0 0 chrX 4056411 4056565 -172917575 - AluSg/x SINE Alu -32 278 125 2324 192 36 2 chrX 4056682 4057039 -172917101 + L1MA9 LINE L1 5797 6177 -135 234 0 0 0 chrX 4057039 4057065 -172917075 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2324 192 36 2 chrX 4057065 4057201 -172916939 + L1MA9 LINE L1 6177 6307 -5 278 304 35 26 chrX 4058046 4058276 -172915864 + L1ME LINE L1 4488 4719 -1427 449 326 113 53 chrX 4058287 4058539 -172915601 + L1ME LINE L1 4759 4995 -1169 2062 119 10 19 chrX 4058539 4058849 -172915291 + AluSx SINE Alu 2 308 -4 449 326 113 53 chrX 4058849 4059422 -172914718 + L1ME LINE L1 4995 5634 -530 1255 140 8 86 chrX 4059591 4059834 -172914306 + AluJo SINE Alu 86 309 -3 401 161 0 86 chrX 4059960 4060041 -172914099 + FLAM_A SINE Alu 37 110 -32 396 0 0 0 chrX 4060047 4060091 -172914049 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 189 0 0 0 chrX 4060876 4060897 -172913243 + (A)n Simple_repeat Simple_repeat 1 21 0 1728 153 0 0 chrX 4061630 4061989 -172912151 - L1PB4 LINE L1 -19 6137 5707 * 3545 206 37 50 chrX 4061979 4062957 -172911183 + L1MA5 LINE L1 5336 6300 0 21 36 0 0 chrX 4063199 4063227 -172910913 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chrX 4063754 4063787 -172910353 + AT_rich Low_complexity Low_complexity 1 33 0 1754 128 36 32 chrX 4064343 4064624 -172909516 - THE1B LTR MaLR 0 364 83 697 122 0 0 chrX 4064625 4064723 -172909417 + AluJb SINE Alu 11 108 -204 276 100 0 0 chrX 4064726 4064766 -172909374 + (CA)n Simple_repeat Simple_repeat 2 41 0 430 253 0 0 chrX 4064902 4064989 -172909151 - MIR SINE MIR -103 159 73 2170 217 35 2 chrX 4064998 4065482 -172908658 - L1MC3 LINE L1 -10 7775 7276 496 156 31 10 chrX 4065482 4065578 -172908562 + MER4A LTR ERV1 1 98 -566 1970 122 3 22 chrX 4065578 4065930 -172908210 + MER4A LTR ERV1 261 664 0 879 72 171 40 chrX 4065935 4065958 -172908182 + MER4A-int LTR ERV1 3 22 -6576 3647 92 17 31 chrX 4065958 4066478 -172907662 + LTR10D LTR ERV1 1 513 0 879 72 171 40 chrX 4066478 4066606 -172907534 + MER4A-int LTR ERV1 22 174 -6424 394 227 11 0 chrX 4066606 4066694 -172907446 - L1MC3 LINE L1 -503 7282 7194 232 233 0 33 chrX 4066698 4066758 -172907382 - MLT1F1 LTR MaLR -443 124 67 249 298 12 12 chrX 4067006 4067090 -172907050 - L2 LINE L2 -211 3061 2978 1688 179 0 11 chrX 4067432 4067747 -172906393 - AluJo SINE Alu 0 312 1 276 216 72 54 chrX 4067988 4068099 -172906041 + L1MC/D LINE L1 5648 5760 -2048 507 178 0 0 chrX 4068099 4068200 -172905940 + GA-rich Low_complexity Low_complexity 2 102 0 575 171 6 12 chrX 4068916 4069076 -172905064 + GA-rich Low_complexity Low_complexity 1 159 0 356 279 154 48 chrX 4069699 4070029 -172904111 - L2 LINE L2 -388 2926 2562 2354 114 0 0 chrX 4070145 4070452 -172903688 - AluSx SINE Alu -5 307 1 1656 157 27 13 chrX 4070559 4070859 -172903281 + L1MA7 LINE L1 5985 6288 -3 1508 147 47 36 chrX 4070865 4071144 -172902996 + AluJo SINE Alu 1 282 -30 24 32 0 0 chrX 4071144 4071175 -172902965 + AT_rich Low_complexity Low_complexity 1 31 0 1266 199 22 36 chrX 4072166 4072442 -172901698 + AluJo SINE Alu 41 312 0 893 208 99 121 chrX 4072675 4072868 -172901272 + MLT1D LTR MaLR 3 199 -306 3297 148 10 2 chrX 4072868 4073383 -172900757 + L1PA15 LINE L1 5634 6152 -13 893 208 99 121 chrX 4073383 4073703 -172900437 + MLT1D LTR MaLR 199 505 0 689 239 71 49 chrX 4073705 4074063 -172900077 - L2 LINE L2 -172 3141 2770 321 200 29 0 chrX 4074078 4074148 -172899992 - MER20 DNA MER1_type -71 148 77 386 313 79 75 chrX 4074163 4074441 -172899699 - L2 LINE L2 -586 2728 2450 588 255 6 25 chrX 4074758 4074915 -172899225 + MER5B DNA MER1_type 2 155 -23 724 230 141 5 chrX 4074959 4075150 -172898990 + MER20 DNA MER1_type 2 218 -1 972 184 22 83 chrX 4075796 4076024 -172898116 + MER20 DNA MER1_type 5 218 -1 443 250 87 0 chrX 4076438 4076542 -172897598 - MER81 DNA DNA 0 114 2 2269 103 0 3 chrX 4077251 4077551 -172896589 + AluSx SINE Alu 1 299 -13 237 180 0 0 chrX 4077812 4077862 -172896278 + (CATA)n Simple_repeat Simple_repeat 3 52 0 234 152 0 0 chrX 4077969 4078002 -172896138 - Alu SINE Alu -16 117 85 348 83 0 0 chrX 4078825 4078873 -172895267 + (GA)n Simple_repeat Simple_repeat 1 48 0 258 32 0 0 chrX 4079265 4079296 -172894844 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1945 169 16 27 chrX 4080160 4080422 -172893718 - MLT1A1 LTR MaLR -2 363 105 3750 84 2 0 chrX 4080422 4080874 -172893266 - MLT2A2 LTR ERVL 0 453 1 1945 169 16 27 chrX 4080874 4080978 -172893162 - MLT1A1 LTR MaLR -260 105 1 1645 153 16 39 chrX 4081464 4081772 -172892368 - AluJb SINE Alu -11 301 1 1426 182 87 0 chrX 4082756 4083042 -172891098 + AluJo SINE Alu 1 311 -1 468 270 16 24 chrX 4084272 4084398 -172889742 + MER94 DNA DNA 10 134 0 2623 102 25 25 chrX 4084520 4084884 -172889256 - THE1B LTR MaLR 0 364 1 625 269 8 95 chrX 4085037 4085062 -172889078 + LTR52 LTR ERVL 1 27 -394 1712 182 0 10 chrX 4085062 4085359 -172888781 - AluJo SINE Alu -18 294 1 625 269 8 95 chrX 4085359 4085575 -172888565 + LTR52 LTR ERVL 27 221 -200 1596 254 91 9 chrX 4086126 4086575 -172887565 - MLT1E LTR MaLR -12 581 96 634 223 153 0 chrX 4086756 4086958 -172887182 - MER106A DNA MER1_type 0 236 4 598 329 40 0 chrX 4086961 4087183 -172886957 + MIR SINE MIR 20 250 -12 193 209 30 0 chrX 4087605 4087672 -172886468 + (TCCA)n Simple_repeat Simple_repeat 1 69 0 338 294 0 9 chrX 4087690 4087799 -172886341 + (TTCA)n Simple_repeat Simple_repeat 2 109 0 560 162 0 58 chrX 4087799 4087990 -172886150 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 477 249 7 12 chrX 4088058 4088506 -172885634 + (TCCA)n Simple_repeat Simple_repeat 1 445 0 242 217 0 0 chrX 4089665 4089711 -172884429 - L3b LINE CR1 -196 1387 1342 2807 97 19 13 chrX 4089849 4090222 -172883918 + THE1C LTR MaLR 1 375 0 306 164 0 66 chrX 4090547 4090608 -172883532 - MER116 DNA Mariner -1 79 23 1188 178 5 0 chrX 4090987 4091214 -172882926 + AluJo SINE Alu 87 314 0 732 207 67 0 chrX 4091214 4091378 -172882762 - MLT1D LTR MaLR -330 175 1 1565 176 40 29 chrX 4091552 4091830 -172882310 - AluJo SINE Alu -31 281 1 1592 210 36 15 chrX 4091832 4092161 -172881979 + MLT1D LTR MaLR 169 504 -1 874 122 0 46 chrX 4092239 4092370 -172881770 + FLAM_C SINE Alu 1 125 -8 27 0 0 0 chrX 4092370 4092397 -172881743 + AT_rich Low_complexity Low_complexity 1 27 0 8087 98 6 15 chrX 4092426 4093503 -172880637 + MER11C LTR ERVK 1 1067 -4 288 242 15 15 chrX 4093833 4093899 -172880241 + MER81 DNA DNA 2 67 -47 204 291 23 47 chrX 4094034 4094120 -172880020 - L2 LINE L2 0 3272 3189 257 222 0 0 chrX 4094209 4094263 -172879877 + L1MC4 LINE L1 6650 6703 -1339 220 186 51 23 chrX 4094414 4094637 -172879503 + (TA)n Simple_repeat Simple_repeat 1 229 0 * 307 220 38 23 chrX 4094619 4094751 -172879389 + (TTATA)n Simple_repeat Simple_repeat 5 138 0 183 286 18 0 chrX 4095634 4095690 -172878450 + MIR SINE MIR 77 133 -129 222 286 98 38 chrX 4096049 4096182 -172877958 + MIR SINE MIR 29 169 -93 319 221 0 15 chrX 4096333 4096401 -172877739 + MER5A DNA MER1_type 14 80 -109 861 143 0 15 chrX 4096408 4096541 -172877599 + FRAM SINE Alu 24 154 -22 569 139 7 131 chrX 4096541 4096678 -172877462 + MER5A DNA MER1_type 60 179 -10 22 0 0 0 chrX 4096984 4097006 -172877134 + AT_rich Low_complexity Low_complexity 1 22 0 1815 171 0 7 chrX 4097006 4097315 -172876825 - AluJb SINE Alu -5 307 1 880 248 103 31 chrX 4098378 4098914 -172875226 + MLT1E1 LTR MaLR 1 654 0 2823 102 3 3 chrX 4099093 4099457 -172874683 + THE1B LTR MaLR 1 364 0 2586 130 75 0 chrX 4099799 4100200 -172873940 - MSTB1 LTR MaLR -1 431 1 1659 211 18 46 chrX 4100589 4101025 -172873115 - LTR37A LTR ERV1 -2 424 1 1772 164 0 35 chrX 4101156 4101467 -172872673 + AluJo SINE Alu 1 300 -12 2333 208 32 75 chrX 4101520 4102185 -172871955 - MER92B LTR ERV1 0 636 1 2935 122 9 14 chrX 4102662 4103098 -172871042 + MER57B LTR ERV1 1 434 0 1128 201 20 108 chrX 4103352 4103720 -172870420 - MLT1A1 LTR MaLR -1 625 280 2222 106 0 7 chrX 4103720 4104021 -172870119 - AluSx SINE Alu -13 299 1 1128 201 20 108 chrX 4104021 4104258 -172869882 - MLT1A1 LTR MaLR -346 280 24 666 232 38 38 chrX 4104266 4104451 -172869689 - MLT1E2 LTR MaLR -194 432 248 226 287 74 74 chrX 4104450 4104680 -172869460 + MARNA DNA Mariner 341 570 -16 * 756 212 55 84 chrX 4104783 4105127 -172869013 + LTR37A LTR ERV1 27 360 -66 1061 260 157 54 chrX 4105672 4106206 -172867934 + MER69 DNA AcHobo 213 801 -1725 385 264 31 16 chrX 4106207 4106336 -172867804 + MER69 DNA AcHobo 2017 2147 -379 342 215 0 0 chrX 4106479 4106544 -172867596 + MER92C LTR ERV1 1 65 -489 3248 104 18 2 chrX 4106561 4107004 -172867136 - L1PA16 LINE L1 0 6166 5717 308 235 15 0 chrX 4107266 4107334 -172866806 + MER92C LTR ERV1 484 552 -2 1123 137 5 58 chrX 4108229 4108419 -172865721 + AluJb SINE Alu 107 286 -26 245 250 122 71 chrX 4108423 4108619 -172865521 + LTR48 LTR ERV1 575 780 -7 1253 201 79 0 chrX 4108740 4108994 -172865146 + AluJb SINE Alu 1 274 -38 333 0 0 0 chrX 4109016 4109053 -172865087 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 387 186 0 0 chrX 4109177 4109247 -172864893 - L1MB8 LINE L1 -1 6177 6108 1035 170 18 50 chrX 4109260 4109478 -172864662 - L1MB2 LINE L1 -2 6169 5959 216 0 0 0 chrX 4109479 4109503 -172864637 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 1229 24 30 6 chrX 4109513 4109681 -172864459 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 2154 108 0 0 chrX 4109686 4109963 -172864177 - AluSx SINE Alu -35 277 1 1331 185 39 8 chrX 4110361 4110620 -172863520 + L1MB2 LINE L1 5587 5853 -318 368 177 8 32 chrX 4110796 4110872 -172863268 + MER21B LTR ERV1 34 136 -469 448 268 51 22 chrX 4110911 4111049 -172863091 + MER21B LTR ERV1 98 239 -624 836 178 16 0 chrX 4111152 4111281 -172862859 - FLAM_C SINE Alu -11 132 2 853 266 83 66 chrX 4111444 4111672 -172862468 - L1ME2 LINE L1 -19 6145 5922 683 216 61 17 chrX 4111672 4111853 -172862287 - MER53 DNA DNA 0 189 1 853 266 83 66 chrX 4111853 4112106 -172862034 - L1ME2 LINE L1 -242 5922 5656 264 188 34 17 chrX 4112110 4112286 -172861854 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 363 117 49 31 chrX 4112297 4112459 -172861681 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 441 113 21 21 chrX 4112509 4112606 -172861534 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 271 320 160 16 chrX 4112640 4113027 -172861113 + L2 LINE L2 2451 2893 -421 2234 92 0 0 chrX 4113028 4113348 -172860792 - AluSx SINE Alu 0 320 1 1916 153 0 7 chrX 4113634 4113935 -172860205 - AluJb SINE Alu -13 299 1 2005 174 26 3 chrX 4113936 4114280 -172859860 - MER47A DNA MER2_type -6 360 9 210 261 15 0 chrX 4115320 4115385 -172858755 + GA-rich Low_complexity Low_complexity 1 66 0 223 191 0 0 chrX 4115890 4115932 -172858208 + T-rich Low_complexity Low_complexity 1 42 0 219 351 54 0 chrX 4116087 4116198 -172857942 + L2 LINE L2 3197 3313 0 1664 232 27 2 chrX 4118199 4118657 -172855483 + MLT2B1 LTR ERVL 3 515 0 3451 133 27 2 chrX 4118848 4119374 -172854766 - MER41C LTR ERV1 -2 552 14 2182 107 0 0 chrX 4119757 4120068 -172854072 - AluSx SINE Alu 0 312 2 458 184 149 0 chrX 4120466 4120553 -172853587 - MER20 DNA MER1_type 0 219 120 201 74 0 0 chrX 4121197 4121224 -172852916 + (TG)n Simple_repeat Simple_repeat 2 28 0 1981 118 76 0 chrX 4121293 4121582 -172852558 - AluSx SINE Alu -1 311 1 232 175 19 155 chrX 4122101 4122204 -172851936 + L1MC4 LINE L1 6615 6703 -1339 202 162 27 0 chrX 4122205 4122242 -172851898 + (TA)n Simple_repeat Simple_repeat 1 38 0 1854 144 10 10 chrX 4122406 4122705 -172851435 - AluJo SINE Alu -9 303 5 463 303 37 31 chrX 4125382 4125705 -172848435 + L1ME4a LINE L1 5600 5924 -197 601 184 18 110 chrX 4125705 4125804 -172848336 - MER5A DNA MER1_type -28 161 81 1850 158 10 7 chrX 4125804 4126107 -172848033 - AluSx SINE Alu -8 304 1 601 184 18 110 chrX 4126107 4126170 -172847970 - MER5A DNA MER1_type -108 81 14 2702 185 53 42 chrX 4126303 4126381 -172847759 + L1MB5 LINE L1 5541 5617 -557 1762 165 28 92 chrX 4126381 4126781 -172847359 - MLT1A2 LTR MaLR 0 374 1 2702 185 53 42 chrX 4126781 4126829 -172847311 + L1MB5 LINE L1 5617 5663 -511 324 70 0 0 chrX 4126829 4126872 -172847268 + (TG)n Simple_repeat Simple_repeat 2 44 0 236 54 54 0 chrX 4126871 4126908 -172847232 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 * 2702 185 53 42 chrX 4126872 4127406 -172846734 + L1MB5 LINE L1 5663 6173 -1 249 308 77 29 chrX 4127406 4127510 -172846630 + MER5B DNA MER1_type 61 169 -9 312 265 0 12 chrX 4127659 4127742 -172846398 + MER5A DNA MER1_type 13 94 -95 2132 200 48 30 chrX 4127991 4128199 -172845941 - MER66B LTR ERV1 0 486 283 2024 134 7 0 chrX 4128199 4128497 -172845643 - AluSx SINE Alu -11 301 2 2132 200 48 30 chrX 4128497 4128762 -172845378 - MER66B LTR ERV1 -203 283 4 986 221 160 19 chrX 4129443 4129706 -172844434 - AluSg SINE Alu 0 300 1 1013 220 77 10 chrX 4130408 4130617 -172843523 + MER58A DNA MER1_type 2 224 0 193 29 29 29 chrX 4131843 4131878 -172842262 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 729 212 0 14 chrX 4131970 4132116 -172842024 - MER58B DNA MER1_type -1 340 197 328 266 261 5 chrX 4133788 4133995 -172840145 - MIR SINE MIR 0 262 3 1093 202 5 14 chrX 4134007 4134225 -172839915 - MER20 DNA MER1_type -3 216 1 271 246 16 0 chrX 4134225 4134286 -172839854 + MER116 DNA Mariner 4 65 -15 421 114 51 0 chrX 4135429 4135508 -172838632 - L1MD2 LINE L1 0 6359 6277 1075 227 18 0 chrX 4135518 4135738 -172838402 + L1MD1 LINE L1 5918 6141 -101 * 3456 197 67 9 chrX 4135735 4136578 -172837562 - L1M4 LINE L1 -4127 2517 1533 313 262 60 99 chrX 4136954 4137026 -172837114 - L1 LINE L1 -1672 4474 4401 1796 145 0 48 chrX 4137026 4137365 -172836775 - AluJb SINE Alu 0 312 6 313 262 60 99 chrX 4137365 4137544 -172836596 - L1 LINE L1 -1745 4401 4233 326 286 38 0 chrX 4137649 4137782 -172836358 - MER103 DNA DNA -4 162 25 1088 173 72 61 chrX 4138759 4138961 -172835179 - MER58B DNA MER1_type -2080 340 133 1956 131 14 0 chrX 4138961 4139243 -172834897 - AluSx SINE Alu -21 291 6 1088 173 72 61 chrX 4139243 4139318 -172834822 - MER58B DNA MER1_type -2287 133 60 305 284 37 9 chrX 4139365 4139474 -172834666 + L1ME4a LINE L1 5808 5919 -202 1670 164 3 16 chrX 4140146 4140450 -172833690 - AluJb SINE Alu -12 300 1 404 347 46 6 chrX 4141187 4141305 -172832835 - MIR SINE MIR -34 228 99 261 0 0 0 chrX 4141305 4141334 -172832806 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 404 347 46 6 chrX 4141334 4141388 -172832752 - MIR SINE MIR -163 99 49 1278 199 14 0 chrX 4142707 4142923 -172831217 + MER20 DNA MER1_type 1 219 0 1870 141 17 20 chrX 4143877 4144175 -172829965 - AluJb SINE Alu -15 297 1 880 184 60 0 chrX 4145752 4145920 -172828220 - L1MB7 LINE L1 0 6184 6007 1425 177 8 0 chrX 4145943 4146203 -172827937 - L1MB7 LINE L1 -352 5826 5565 292 253 110 34 chrX 4146284 4146430 -172827710 + L2 LINE L2 1882 2038 -1276 262 286 43 0 chrX 4146906 4146976 -172827164 + L2 LINE L2 3196 3268 -4 227 164 77 10 chrX 4146982 4147009 -172827131 + (TA)n Simple_repeat Simple_repeat 1 25 -86 2715 233 51 19 chrX 4147009 4147641 -172826499 + MER82 DNA MER2_type 1 652 -1 227 164 77 10 chrX 4147641 4147717 -172826423 + (TA)n Simple_repeat Simple_repeat 25 111 0 * 276 185 33 82 chrX 4147643 4147827 -172826313 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 281 241 51 6 chrX 4147702 4147860 -172826280 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 2216 118 14 35 chrX 4147897 4148243 -172825897 - THE1B LTR MaLR 0 364 26 6086 124 2 5 chrX 4148243 4149321 -172824819 + L1PB1 LINE L1 5019 6094 -57 259 163 0 0 chrX 4149339 4149382 -172824758 - THE1B LTR MaLR -332 43 1 225 279 13 0 chrX 4149393 4149472 -172824668 + (TA)n Simple_repeat Simple_repeat 1 80 0 397 329 83 45 chrX 4149568 4149966 -172824174 + L2 LINE L2 2365 2777 -537 2347 89 0 10 chrX 4151150 4151497 -172822643 - AluY SINE Alu 0 344 1 237 33 0 0 chrX 4151937 4151967 -172822173 + (CA)n Simple_repeat Simple_repeat 1 30 0 5808 74 4 1 chrX 4155234 4155948 -172818192 + L1PA10 LINE L1 5450 6165 -3 1764 180 0 3 chrX 4156410 4156693 -172817447 + AluJo SINE Alu 1 282 -30 225 0 0 0 chrX 4156700 4156725 -172817415 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 254 302 78 31 chrX 4157674 4157803 -172816337 + MIR SINE MIR 78 212 -50 360 308 52 28 chrX 4157877 4158127 -172816013 - L1ME LINE L1 -297 5824 5569 353 286 43 9 chrX 4159194 4159329 -172814811 - L1MD2 LINE L1 0 6242 6106 1689 141 17 44 chrX 4159536 4159868 -172814272 - AluJo SINE Alu 0 312 1 1106 213 15 0 chrX 4159874 4160076 -172814064 - MER58A DNA MER1_type -15 209 5 1909 127 40 3 chrX 4160208 4160508 -172813632 + AluSx SINE Alu 1 311 -1 276 100 0 0 chrX 4160508 4160548 -172813592 + (GA)n Simple_repeat Simple_repeat 1 40 0 239 132 38 0 chrX 4160683 4160736 -172813404 + (CCTA)n Simple_repeat Simple_repeat 3 57 0 2393 90 0 0 chrX 4361089 4361388 -172612752 - AluSg SINE Alu -11 299 1 884 137 17 105 chrX 4361566 4361830 -172612310 + L1M3 LINE L1 5387 5609 -574 2185 130 0 0 chrX 4361830 4362138 -172612002 + AluSx SINE Alu 1 308 -4 289 276 203 11 chrX 4362148 4362409 -172611731 - L2 LINE L2 -609 2705 2395 812 286 25 0 chrX 4362457 4362660 -172611480 - MER58A DNA MER1_type -16 208 1 380 293 115 13 chrX 4362668 4362825 -172611315 - L2 LINE L2 -1024 2290 2118 438 256 137 21 chrX 4362974 4363134 -172611006 + MIR SINE MIR 2 182 -62 475 246 64 115 chrX 4363734 4363870 -172610270 - L1MC4 LINE L1 -966 7076 6935 660 208 24 8 chrX 4363870 4363995 -172610145 - FLAM_A SINE Alu -6 127 1 475 246 64 115 chrX 4363995 4364171 -172609969 - L1MC4 LINE L1 -1107 6935 6780 329 251 101 84 chrX 4364165 4364344 -172609796 + L1MC5 LINE L1 6999 7180 -781 * 4191 177 29 51 chrX 4364484 4365274 -172608866 - L1MB8 LINE L1 -1 6177 5371 2343 99 0 3 chrX 4365274 4365587 -172608553 - AluSx SINE Alu 0 312 1 4191 177 29 51 chrX 4365587 4365666 -172608474 - L1MB8 LINE L1 -807 5371 5292 3760 136 80 0 chrX 4365666 4366267 -172607873 - L1MC1 LINE L1 0 6333 5685 4191 177 29 51 chrX 4366267 4366392 -172607748 - L1MB8 LINE L1 -886 5292 5166 2418 79 0 10 chrX 4366392 4366696 -172607444 - AluSg SINE Alu -9 301 1 4191 177 29 51 chrX 4366696 4366887 -172607253 - L1MB8 LINE L1 -1012 5166 5007 1443 102 20 0 chrX 4366910 4367202 -172606938 + AluJb SINE Alu 110 405 0 446 167 118 0 chrX 4367202 4367304 -172606836 - L1MB8 LINE L1 -1107 5039 4926 225 271 71 12 chrX 4367349 4367434 -172606706 + L1MC4 LINE L1 7899 7988 -54 1445 180 46 4 chrX 4367706 4368018 -172606122 + MER33 DNA MER1_type 1 313 -11 276 330 52 0 chrX 4368091 4368188 -172605952 + MIR SINE MIR 19 120 -88 204 296 28 14 chrX 4368207 4368278 -172605862 - L2 LINE L2 -4 3309 3238 258 158 0 0 chrX 4368623 4368661 -172605479 + MLT1I LTR MaLR 98 135 -274 421 193 45 23 chrX 4368705 4368793 -172605347 + MLT1G1 LTR MaLR 224 313 -282 1317 158 29 0 chrX 4368818 4369027 -172605113 + MER20 DNA MER1_type 2 216 -3 1503 231 43 5 chrX 4370521 4370893 -172603247 - MER58D DNA MER1_type 0 386 1 297 250 9 37 chrX 4371149 4371257 -172602883 + C-rich Low_complexity Low_complexity 4 108 0 246 256 0 23 chrX 4371265 4371351 -172602789 + (CCG)n Simple_repeat Simple_repeat 2 85 0 23 0 0 0 chrX 4371497 4371520 -172602620 + GC_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrX 4371628 4371657 -172602483 + GC_rich Low_complexity Low_complexity 1 29 0 202 312 130 7 chrX 4371986 4372140 -172602000 - MER5B DNA MER1_type -5 173 1 862 181 82 16 chrX 4372541 4372723 -172601417 + L1M4 LINE L1 4901 5094 -1052 1465 268 92 15 chrX 4373934 4374412 -172599728 - MLT1G1 LTR MaLR -7 588 74 437 167 26 0 chrX 4374733 4374811 -172599329 - MER58 DNA MER1_type 0 2420 2341 1366 174 156 46 chrX 4374816 4375207 -172598933 - MLT1D LTR MaLR -70 435 2 237 195 0 0 chrX 4375208 4375249 -172598891 - MER58 DNA MER1_type -137 78 38 2353 171 10 10 chrX 4375299 4375690 -172598450 - MSTD LTR MaLR -5 391 1 896 147 0 29 chrX 4375919 4376055 -172598085 - FLAM_A SINE Alu -1 132 1 2375 79 16 3 chrX 4376090 4376393 -172597747 - AluSp SINE Alu -6 307 1 1081 156 9 73 chrX 4376680 4376898 -172597242 - MER46A DNA MER2_type -1 235 32 2120 117 3 10 chrX 4376954 4377253 -172596887 + AluSx SINE Alu 1 297 -15 1506 261 156 31 chrX 4377708 4378491 -172595649 + HAL1 LINE L1 1627 2507 0 2920 158 66 19 chrX 4378506 4379037 -172595103 + MER68 LTR ERV1 3 558 -4 1224 172 21 21 chrX 4379541 4379779 -172594361 + L1MD2 LINE L1 6122 6359 0 1530 206 108 30 chrX 4379964 4380397 -172593743 - MLT1C LTR MaLR 0 467 1 1534 156 31 49 chrX 4380782 4381070 -172593070 - MER58 DNA MER1_type -58 283 1 519 17 0 0 chrX 4381100 4381160 -172592980 + (TG)n Simple_repeat Simple_repeat 2 61 0 281 269 201 52 chrX 4381173 4381422 -172592718 - L3 LINE CR1 -640 937 652 2338 86 0 7 chrX 4381488 4381801 -172592339 - AluSx SINE Alu 0 312 1 1975 108 21 7 chrX 4382218 4382532 -172591608 - AluSq SINE Alu 0 318 1 1543 218 121 20 chrX 4382905 4383181 -172590959 - MLT1D LTR MaLR 0 505 258 1897 137 3 36 chrX 4383181 4383488 -172590652 - AluJo SINE Alu -14 298 2 1543 218 121 20 chrX 4383488 4383666 -172590474 - MLT1D LTR MaLR -247 258 5 465 267 33 0 chrX 4383743 4383863 -172590277 + MER94 DNA DNA 10 133 -1 2298 109 0 0 chrX 4384041 4384334 -172589806 - AluSx SINE Alu -19 293 1 241 260 68 14 chrX 4385005 4385078 -172589062 + L1ME LINE L1 5748 5824 -297 331 314 28 28 chrX 4385113 4385280 -172588860 + MIR SINE MIR 13 180 -28 1774 220 15 3 chrX 4385290 4385627 -172588513 - MER58B DNA MER1_type 0 341 1 2401 78 0 16 chrX 4385683 4385991 -172588149 + AluSx SINE Alu 1 303 -9 455 86 71 14 chrX 4386629 4386699 -172587441 - MSTD LTR MaLR -2 394 321 2322 79 0 7 chrX 4386700 4386991 -172587149 + AluSq SINE Alu 2 290 -23 1623 155 51 83 chrX 4387431 4387826 -172586314 + MLT2D LTR ERVL 4 480 -40 286 181 48 0 chrX 4387832 4387915 -172586225 + (TATG)n Simple_repeat Simple_repeat 1 87 0 326 134 0 5 chrX 4387915 4387929 -172586211 + MLT2B1 LTR ERVL 391 404 -116 186 43 0 0 chrX 4387929 4387952 -172586188 + (CA)n Simple_repeat Simple_repeat 2 24 0 326 134 0 5 chrX 4387952 4387993 -172586147 + MLT2B1 LTR ERVL 404 520 0 349 223 106 0 chrX 4388272 4388366 -172585774 - Charlie7 DNA MER1_type -2507 105 2 24 0 0 0 chrX 4388714 4388738 -172585402 + AT_rich Low_complexity Low_complexity 1 24 0 213 289 0 0 chrX 4389081 4389133 -172585007 + MER91B DNA MER1_type 79 130 -60 435 232 11 42 chrX 4389161 4389256 -172584884 + MER91B DNA MER1_type 98 189 -1 215 237 0 34 chrX 4389376 4389435 -172584705 - L2 LINE L2 0 3313 3257 302 271 161 9 chrX 4389679 4389822 -172584318 - MIR SINE MIR -65 143 28 21 0 0 0 chrX 4390311 4390332 -172583808 + AT_rich Low_complexity Low_complexity 1 21 0 593 265 111 20 chrX 4390381 4390686 -172583454 - L1MC4 LINE L1 0 8042 7604 627 302 86 7 chrX 4390691 4390969 -172583171 - MLT1H LTR MaLR 0 549 250 2590 194 18 22 chrX 4391433 4391943 -172582197 - LTR31 LTR ERV1 -8 611 104 1841 163 17 0 chrX 4391984 4392273 -172581867 - AluJo SINE Alu -18 294 1 208 331 110 55 chrX 4392591 4392718 -172581422 + MIR SINE MIR 59 192 -70 474 301 56 20 chrX 4393025 4393221 -172580919 - MIR SINE MIR 0 262 60 320 317 50 25 chrX 4393686 4393806 -172580334 - L2 LINE L2 -1 3271 3149 290 297 42 8 chrX 4393932 4394050 -172580090 - MIR SINE MIR -121 141 20 2170 102 10 3 chrX 4394363 4394656 -172579484 + AluSq SINE Alu 1 295 -18 3126 167 13 9 chrX 4394662 4395206 -172578934 + MER68 LTR ERV1 17 562 0 192 40 0 0 chrX 4395214 4395239 -172578901 + (TC)n Simple_repeat Simple_repeat 2 26 0 382 216 0 36 chrX 4395376 4395543 -172578597 + CT-rich Low_complexity Low_complexity 4 164 0 18940 49 6 1 chrX 4396157 4399207 -172574933 - L1PA8 LINE L1 -8 6164 3105 2795 29 0 0 chrX 4399817 4400159 -172573981 - AluYa5 SINE Alu 0 342 1 296 282 70 106 chrX 4400170 4400443 -172573697 + L2 LINE L2 3005 3267 -46 1028 157 52 33 chrX 4400527 4400737 -172573403 - MER58 DNA MER1_type -2205 215 2 276 30 0 0 chrX 4401063 4401096 -172573044 + (CA)n Simple_repeat Simple_repeat 2 34 0 212 175 0 25 chrX 4403236 4403276 -172570864 + (TG)n Simple_repeat Simple_repeat 2 40 0 2594 68 0 3 chrX 4404275 4404585 -172569555 + AluY SINE Alu 1 309 -2 935 99 7 0 chrX 4404585 4404726 -172569414 + (TA)n Simple_repeat Simple_repeat 2 143 0 381 297 45 0 chrX 4405781 4405892 -172568248 + L2 LINE L2 3197 3312 -1 1140 138 40 62 chrX 4406726 4406950 -172567190 + MER20 DNA MER1_type 1 219 0 1696 126 67 22 chrX 4407308 4407611 -172566529 + AluSg SINE Alu 1 315 0 2076 153 12 21 chrX 4409572 4409911 -172564229 + MER58B DNA MER1_type 5 340 -1 494 274 153 6 chrX 4410687 4410844 -172563296 + MER5A DNA MER1_type 10 189 0 259 286 63 48 chrX 4410849 4410975 -172563165 + MIR SINE MIR 19 146 -62 1535 159 132 25 chrX 4410985 4411311 -172562829 - MLT1A1 LTR MaLR 0 365 5 387 336 18 21 chrX 4411423 4411666 -172562474 - MIR SINE MIR -2 260 20 863 213 4 101 chrX 4412232 4412509 -172561631 - MIR SINE MIR -6 256 7 249 21 43 43 chrX 4412549 4412596 -172561544 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1054 164 13 69 chrX 4412784 4413016 -172561124 + MER20 DNA MER1_type 1 219 0 389 86 17 0 chrX 4414696 4414754 -172559386 - L1PA6 LINE L1 -3 6151 6093 3268 111 45 17 chrX 4415270 4416208 -172557932 + MER11C LTR ERVK 1 1071 0 361 291 34 8 chrX 4416517 4416634 -172557506 + L2 LINE L2 3192 3311 -2 267 372 34 34 chrX 4416672 4416820 -172557320 - L2 LINE L2 0 3272 3125 2088 132 10 10 chrX 4416945 4417256 -172556884 + AluJb SINE Alu 1 311 -1 1480 112 8 33 chrX 4418162 4418403 -172555737 - MER65C LTR ERV1 0 461 227 2537 147 45 2 chrX 4418406 4418808 -172555332 + MSTB LTR MaLR 8 426 0 1288 163 13 13 chrX 4418808 4419041 -172555099 - MER65C LTR ERV1 -228 233 1 2067 144 0 3 chrX 4419135 4419433 -172554707 - AluSx SINE Alu -15 297 1 782 151 27 62 chrX 4419602 4419748 -172554392 - FLAM_C SINE Alu -1 142 2 2337 102 10 0 chrX 4420310 4420614 -172553526 + AluSx SINE Alu 1 307 -5 25 31 0 0 chrX 4420954 4420986 -172553154 + AT_rich Low_complexity Low_complexity 1 32 0 637 282 72 0 chrX 4421111 4421292 -172552848 - MIR SINE MIR -66 196 3 389 306 19 64 chrX 4421359 4421516 -172552624 - L2 LINE L2 -7 3265 3116 261 0 0 0 chrX 4421938 4421967 -172552173 + (T)n Simple_repeat Simple_repeat 1 29 0 818 129 0 168 chrX 4423298 4423500 -172550640 - MER45A DNA AcHobo -10 168 1 2430 93 0 0 chrX 4423808 4424118 -172550022 + AluSg SINE Alu 1 310 0 657 86 0 0 chrX 4424144 4424237 -172549903 + L1M3 LINE L1 5588 5680 -500 1659 141 160 10 chrX 4424237 4424549 -172549591 - MSTA LTR MaLR -69 359 1 440 254 137 50 chrX 4424880 4425377 -172548763 + L1M4 LINE L1 2922 3461 -2685 3122 150 46 28 chrX 4425471 4425607 -172548533 - L1MB4 LINE L1 -2 6178 6046 1965 148 34 0 chrX 4425607 4425904 -172548236 + AluSx SINE Alu 1 307 -5 3122 150 46 28 chrX 4425904 4426332 -172547808 - L1MB4 LINE L1 -134 6046 5604 1565 170 0 8 chrX 4426648 4426913 -172547227 + AluJb SINE Alu 39 301 -11 272 275 79 62 chrX 4426916 4427094 -172547046 + L1P4 LINE L1 5417 5597 -568 29 0 0 0 chrX 4427366 4427395 -172546745 + GC_rich Low_complexity Low_complexity 1 29 0 2013 128 0 0 chrX 4427590 4427864 -172546276 + AluSx SINE Alu 1 274 -38 214 230 37 118 chrX 4428686 4428821 -172545319 + L2 LINE L2 2832 2955 -358 3249 157 23 14 chrX 4428848 4429404 -172544736 - L1MB7 LINE L1 -11 6173 5613 3583 135 24 24 chrX 4429404 4429988 -172544152 + MER41B LTR ERV1 4 587 -48 1636 181 21 9 chrX 4429992 4430318 -172543822 - L1MB7 LINE L1 -565 5619 5290 359 317 0 25 chrX 4430351 4430471 -172543669 + L2 LINE L2 3197 3313 0 203 0 37 0 chrX 4430953 4430980 -172543160 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 475 264 289 0 chrX 4432137 4432338 -172541802 + MIR SINE MIR 2 260 -2 459 249 102 69 chrX 4432351 4432656 -172541484 + L1ME4a LINE L1 5790 6104 -17 3687 155 102 23 chrX 4433378 4434107 -172540033 + LTR48 LTR ERV1 2 787 0 835 134 0 24 chrX 4434420 4434547 -172539593 - FLAM_C SINE Alu -11 132 9 487 320 11 17 chrX 4434886 4435064 -172539076 + MER5A DNA MER1_type 7 183 -6 1149 179 6 35 chrX 4435114 4435437 -172538703 - MLT1A1 LTR MaLR 0 365 1 639 182 51 132 chrX 4435568 4435893 -172538247 + L1ME1 LINE L1 5177 5472 -694 856 155 0 0 chrX 4435915 4436044 -172538096 - FRAM SINE Alu -23 153 25 2861 200 59 15 chrX 4436086 4436752 -172537388 + L1ME1 LINE L1 5467 6161 -5 180 0 0 0 chrX 4436761 4436781 -172537359 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2341 96 0 19 chrX 4436914 4437226 -172536914 + AluSg1 SINE Alu 1 306 -3 209 195 0 0 chrX 4437669 4437710 -172536430 + A-rich Low_complexity Low_complexity 2 42 0 2684 187 27 32 chrX 4438820 4439414 -172534726 + L1ME3 LINE L1 5572 6162 0 188 297 33 44 chrX 4439561 4439652 -172534488 - L2 LINE L2 -18 3295 3206 2083 174 119 30 chrX 4440068 4440529 -172533611 - MLT1D LTR MaLR -3 502 1 987 137 0 46 chrX 4440825 4441000 -172533140 - MER20 DNA MER1_type -52 167 1 586 269 52 24 chrX 4441414 4441626 -172532514 + MIR SINE MIR 3 220 -42 742 286 49 53 chrX 4443538 4443822 -172530318 + L1ME4a LINE L1 5539 5822 -299 2359 82 0 16 chrX 4443822 4444125 -172530015 + AluSg SINE Alu 1 298 -12 742 286 49 53 chrX 4444125 4444409 -172529731 + L1ME4a LINE L1 5822 6105 -16 21 36 0 0 chrX 4444410 4444438 -172529702 + AT_rich Low_complexity Low_complexity 1 28 0 1742 177 7 13 chrX 4444520 4444819 -172529321 - AluJb SINE Alu -15 297 1 2187 82 4 0 chrX 4446313 4446581 -172527559 + AluSp SINE Alu 29 297 -16 229 25 0 50 chrX 4447120 4447160 -172526980 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2069 91 4 0 chrX 4447986 4448250 -172525890 + AluSp SINE Alu 39 303 -10 307 274 230 22 chrX 4448647 4448782 -172525358 - MIR3 SINE MIR -25 183 21 249 57 0 0 chrX 4449030 4449065 -172525075 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 5277 80 6 3 chrX 4449077 4449718 -172524422 + LTR9B LTR ERV1 1 643 -1 1844 140 0 14 chrX 4449718 4449997 -172524143 - AluSx SINE Alu -37 275 1 729 175 114 81 chrX 4450427 4450638 -172523502 - MER20 DNA MER1_type -1 218 1 658 229 98 71 chrX 4452307 4452730 -172521410 - L2 LINE L2 -124 3189 2743 2673 152 52 7 chrX 4452730 4453190 -172520950 - L1MB5 LINE L1 0 6174 5694 658 229 98 71 chrX 4453190 4453235 -172520905 - L2 LINE L2 -570 2743 2701 2090 97 20 23 chrX 4453613 4453913 -172520227 + AluSg1 SINE Alu 1 299 -10 300 332 135 31 chrX 4455110 4455435 -172518705 + L2 LINE L2 2914 3272 0 240 111 0 0 chrX 4455436 4455472 -172518668 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 215 31 31 0 chrX 4455533 4455565 -172518575 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 565 310 26 0 chrX 4455812 4455967 -172518173 - MIR3 SINE MIR -5 203 45 2301 89 0 35 chrX 4456186 4456501 -172517639 + AluSq SINE Alu 1 304 -9 684 261 101 10 chrX 4456502 4456709 -172517431 + MIR SINE MIR 31 256 -6 484 251 43 59 chrX 4456774 4456908 -172517232 + L1ME3A LINE L1 5986 6118 -52 2914 202 8 8 chrX 4456908 4457427 -172516713 - LTR40a LTR ERVL 0 519 1 484 251 43 59 chrX 4457427 4457479 -172516661 + L1ME3A LINE L1 6118 6169 -1 434 226 83 15 chrX 4457504 4457637 -172516503 + MER103 DNA DNA 5 146 -20 450 249 148 47 chrX 4457641 4457810 -172516330 - MER5A DNA MER1_type 0 189 4 594 260 13 20 chrX 4458436 4458586 -172515554 + MER5B DNA MER1_type 6 154 -24 438 339 44 22 chrX 4458988 4459215 -172514925 + MIR SINE MIR 31 262 0 447 217 181 12 chrX 4459265 4459431 -172514709 + MER5C DNA MER1_type 39 232 -92 313 179 265 8 chrX 4459454 4459571 -172514569 + MER5C DNA MER1_type 172 318 -6 2137 205 116 43 chrX 4459630 4459694 -172514446 - MLT1E LTR MaLR 0 593 535 1822 174 10 3 chrX 4459694 4460005 -172514135 - AluSq SINE Alu 0 313 1 2137 205 116 43 chrX 4460005 4460492 -172513648 - MLT1E LTR MaLR -58 535 2 219 167 0 0 chrX 4461214 4461256 -172512884 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2226 50 0 0 chrX 4461256 4461515 -172512625 + AluY SINE Alu 40 298 -13 1391 161 49 67 chrX 4462353 4462682 -172511458 - MER33 DNA MER1_type -1 323 1 385 129 14 43 chrX 4463508 4463578 -172510562 - MLT1G LTR MaLR -300 290 223 1962 152 0 13 chrX 4463736 4464051 -172510089 - AluSx SINE Alu -1 311 1 794 280 149 30 chrX 4464410 4464839 -172509301 - MLT1H1 LTR MaLR -8 547 68 1997 149 0 7 chrX 4464979 4465301 -172508839 - AluJb SINE Alu 0 312 1 2294 108 0 3 chrX 4465762 4466068 -172508072 + AluSx SINE Alu 1 305 -7 1428 188 48 72 chrX 4467047 4467218 -172506922 + Charlie1b DNA MER1_type 93 267 -2494 1930 164 7 0 chrX 4467218 4467528 -172506612 + AluJo SINE Alu 1 312 0 1428 188 48 72 chrX 4467528 4467798 -172506342 + Charlie1b DNA MER1_type 267 523 0 602 239 24 106 chrX 4467806 4467942 -172506198 + MIR SINE MIR 29 137 -125 2077 117 0 3 chrX 4467942 4468249 -172505891 + AluSx SINE Alu 1 306 0 602 239 24 106 chrX 4468249 4468366 -172505774 + MIR SINE MIR 137 262 0 274 326 70 8 chrX 4468363 4468492 -172505648 - L2 LINE L2 0 3272 3136 * 275 297 136 8 chrX 4468736 4468854 -172505286 - L2 LINE L2 -4 3268 3136 241 294 84 25 chrX 4469090 4469209 -172504931 - MIR SINE MIR -111 151 26 1849 174 0 0 chrX 4469278 4469572 -172504568 + AluJb SINE Alu 1 294 -18 1563 153 108 28 chrX 4469583 4469871 -172504269 + AluJo SINE Alu 2 312 0 2104 112 52 33 chrX 4469983 4470313 -172503827 + THE1B LTR MaLR 29 364 0 12985 80 1 3 chrX 4470313 4471896 -172502244 + THE1B-int LTR MaLR 1 1580 0 2637 78 50 31 chrX 4471896 4472253 -172501887 + THE1B LTR MaLR 1 364 0 204 40 0 0 chrX 4473256 4473281 -172500859 + (CA)n Simple_repeat Simple_repeat 2 26 0 854 158 0 0 chrX 4473287 4473407 -172500733 - FLAM_C SINE Alu -13 120 1 498 311 34 17 chrX 4473864 4474041 -172500099 - MER5A DNA MER1_type -5 184 5 727 280 36 40 chrX 4474909 4475159 -172498981 - MIR SINE MIR 0 262 14 487 225 129 66 chrX 4476029 4476234 -172497906 - L1MC5 LINE L1 -20 7941 7713 1370 140 33 9 chrX 4476234 4476448 -172497692 + MER20 DNA MER1_type 1 219 0 487 225 129 66 chrX 4476448 4476513 -172497627 - L1MC5 LINE L1 -248 7713 7654 256 277 0 60 chrX 4477675 4477758 -172496382 + LTR67 LTR ERVL 103 180 -377 183 156 0 0 chrX 4478421 4478453 -172495687 + GA-rich Low_complexity Low_complexity 2 33 0 551 277 148 61 chrX 4478539 4478918 -172495222 + L1MC4a LINE L1 5522 5933 -1875 28 29 0 0 chrX 4479110 4479145 -172494995 + AT_rich Low_complexity Low_complexity 1 35 0 1837 143 3 17 chrX 4479659 4479976 -172494164 + AluSx SINE Alu 1 313 0 1197 215 9 5 chrX 4481981 4482204 -172491936 - MER58A DNA MER1_type 0 224 1 2304 105 3 0 chrX 4482386 4482690 -172491450 - AluSp SINE Alu -8 305 1 187 368 0 0 chrX 4483053 4483121 -172491019 + L2 LINE L2 2411 2478 -836 2201 132 3 0 chrX 4483313 4483624 -172490516 + AluSx SINE Alu 1 312 0 392 194 223 109 chrX 4483684 4483931 -172490209 + ORSL DNA AcHobo 1 275 0 297 271 14 0 chrX 4484318 4484388 -172489752 - L2 LINE L2 0 3272 3202 1302 140 14 14 chrX 4485139 4485353 -172488787 - MER20 DNA MER1_type 0 219 6 484 314 18 0 chrX 4485471 4485640 -172488500 + MER5B DNA MER1_type 7 178 0 305 358 101 28 chrX 4485750 4485968 -172488172 - L2 LINE L2 -12 3260 3027 263 222 42 62 chrX 4486352 4486496 -172487644 - L1MC5 LINE L1 -37 7924 7784 1958 147 6 13 chrX 4487652 4487788 -172486352 + AluJb SINE Alu 1 136 -176 2024 115 6 43 chrX 4487788 4488110 -172486030 + AluSx SINE Alu 1 310 -2 1958 147 6 13 chrX 4488110 4488287 -172485853 + AluJb SINE Alu 136 312 0 1541 133 4 0 chrX 4490917 4491143 -172482997 - L1PA15 LINE L1 -4 6161 5935 2486 60 3 0 chrX 4492029 4492328 -172481812 + AluY SINE Alu 1 300 -11 460 267 193 41 chrX 4493822 4494185 -172479955 - L2 LINE L2 -2025 1289 872 557 293 39 6 chrX 4494215 4494396 -172479744 + MIR SINE MIR 8 194 -68 581 246 56 6 chrX 4494467 4494646 -172479494 - L2 LINE L2 -2464 850 663 237 200 18 0 chrX 4498280 4498335 -172475805 - PABL_A LTR ERV1 -183 477 422 267 173 0 0 chrX 4499029 4499081 -172475059 + (TG)n Simple_repeat Simple_repeat 2 53 0 224 210 0 16 chrX 4499107 4499169 -172474971 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1162 169 19 0 chrX 4499169 4499376 -172474764 - L1MC1 LINE L1 -10 6323 6113 242 318 95 16 chrX 4500236 4500362 -172473778 + MIR SINE MIR 125 260 -2 1859 143 66 9 chrX 4500381 4500716 -172473424 - L1MA4 LINE L1 -6 6294 5941 2297 96 3 3 chrX 4501804 4502107 -172472033 + AluSx SINE Alu 1 303 -9 231 118 0 0 chrX 4503457 4503491 -172470649 - L1ME1 LINE L1 -10 6156 6123 229 208 21 0 chrX 4503620 4503668 -172470472 + MIR3 SINE MIR 130 178 -30 570 240 72 50 chrX 4504685 4504906 -172469234 + L2 LINE L2 3088 3313 0 1346 247 29 18 chrX 4505098 4505482 -172468658 + L1ME1 LINE L1 5771 6161 -5 375 23 0 0 chrX 4507363 4507407 -172466733 + (TC)n Simple_repeat Simple_repeat 1 44 0 2362 62 23 13 chrX 4508581 4508888 -172465252 + AluY SINE Alu 2 311 0 330 305 133 17 chrX 4509641 4509874 -172464266 + L2 LINE L2 2712 2971 -343 1003 171 6 0 chrX 4509879 4510049 -172464091 + FRAM SINE Alu 4 174 -2 442 194 48 48 chrX 4510850 4510974 -172463166 + MIR SINE MIR 65 188 -74 1706 158 14 0 chrX 4511002 4511280 -172462860 + AluJo SINE Alu 1 282 -30 269 238 125 12 chrX 4511357 4511437 -172462703 - MIR3 SINE MIR -2 206 118 385 250 80 46 chrX 4511747 4511942 -172462198 + L1MB3 LINE L1 5522 5711 -410 1607 111 4 26 chrX 4511986 4512220 -172461920 - AluSg/x SINE Alu -3 309 81 3851 210 21 1 chrX 4512320 4513173 -172460967 - L1 LINE L1 -1282 4864 3993 1661 132 0 31 chrX 4513186 4513340 -172460800 - AluSx SINE Alu -24 288 144 444 37 0 0 chrX 4513340 4513394 -172460746 + (TG)n Simple_repeat Simple_repeat 2 55 0 1661 132 0 31 chrX 4513394 4513497 -172460643 - AluSx SINE Alu -168 144 39 955 209 4 53 chrX 4513597 4513841 -172460299 + L1MB3 LINE L1 5950 6181 -2 1030 288 104 32 chrX 4513897 4514646 -172459494 + L1M4 LINE L1 4471 5273 -873 188 256 0 0 chrX 4514881 4514920 -172459220 - L2 LINE L2 -20 3252 3214 1894 168 6 3 chrX 4515146 4515462 -172458678 + MER2 DNA MER2_type 28 344 -1 1717 172 84 3 chrX 4515861 4516244 -172457896 - Charlie1b DNA MER1_type -1 522 109 238 280 53 67 chrX 4516409 4516559 -172457581 + MER5A DNA MER1_type 2 149 -40 513 103 0 0 chrX 4516720 4516788 -172457352 - AluS SINE Alu -244 69 2 5453 126 57 32 chrX 4516792 4517808 -172456332 + MER4B-int LTR ERV1 3419 4459 -2139 1629 115 4 4 chrX 4517816 4518042 -172456098 - AluSg/x SINE Alu -14 298 73 2257 99 13 19 chrX 4518050 4518362 -172455778 + MER4A LTR ERV1 355 664 0 3931 144 49 68 chrX 4518848 4519021 -172455119 + MER4B-int LTR ERV1 1433 1608 -4990 2175 120 14 0 chrX 4519021 4519312 -172454828 - AluSx SINE Alu -17 295 1 3931 144 49 68 chrX 4519312 4520393 -172453747 + MER4B-int LTR ERV1 1608 2485 -4113 1017 68 83 0 chrX 4520398 4520530 -172453610 - AluSp/q SINE Alu -10 303 161 213 282 14 0 chrX 4521137 4521208 -172452932 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 234 0 0 0 chrX 4521371 4521397 -172452743 + (CA)n Simple_repeat Simple_repeat 2 27 0 3720 123 0 29 chrX 4521408 4521660 -172452480 + L1P LINE L1 3497 3755 -2391 1750 155 54 0 chrX 4521660 4521937 -172452203 + AluSx SINE Alu 1 292 -20 3720 123 0 29 chrX 4521937 4522278 -172451862 + L1P LINE L1 3755 4073 -2073 475 162 338 7 chrX 4522529 4522671 -172451469 - MER5A DNA MER1_type 0 189 1 359 256 144 0 chrX 4522857 4522982 -172451158 + MIR SINE MIR 108 250 -12 220 0 27 54 chrX 4523239 4523276 -172450864 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1920 164 0 10 chrX 4523295 4523607 -172450533 - AluJb SINE Alu -3 309 1 2417 224 36 18 chrX 4524063 4524665 -172449475 + L1MC4 LINE L1 7316 7928 -114 589 220 0 50 chrX 4524672 4524831 -172449309 + L1MC4 LINE L1 7892 8042 0 1486 224 97 84 chrX 4525246 4526106 -172448034 + L2 LINE L2 2284 3165 -148 4921 51 1 40 chrX 4526154 4526824 -172447316 + SVA Other Other 1 644 -742 229 83 0 125 chrX 4526924 4526972 -172447168 - Alu SINE Alu -68 65 24 628 64 0 0 chrX 4526987 4527065 -172447075 + LTR49 LTR ERV1 517 594 -1 362 246 133 74 chrX 4527065 4527268 -172446872 + MIR SINE MIR 47 261 -1 2130 141 0 3 chrX 4527599 4527905 -172446235 + AluJo SINE Alu 1 305 -7 2046 130 27 0 chrX 4528116 4528415 -172445725 + AluSx SINE Alu 1 307 -5 413 200 117 8 chrX 4528531 4528651 -172445489 + L1ME2 LINE L1 6023 6155 -9 237 234 16 16 chrX 4529098 4529162 -172444978 + CT-rich Low_complexity Low_complexity 1 64 0 288 0 0 0 chrX 4529241 4529273 -172444867 + (TG)n Simple_repeat Simple_repeat 2 33 0 2324 106 3 0 chrX 4529304 4529615 -172444525 + AluSx SINE Alu 1 312 0 828 140 78 39 chrX 4529678 4529857 -172444283 - MER53 DNA DNA -3 186 1 23 0 0 0 chrX 4531233 4531256 -172442884 + AT_rich Low_complexity Low_complexity 1 23 0 3834 138 87 43 chrX 4531504 4531821 -172442319 - MER4-int LTR ERV1 -4794 1804 1502 186 43 0 0 chrX 4531821 4531844 -172442296 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3834 138 87 43 chrX 4531844 4532163 -172441977 - MER4-int LTR ERV1 -5096 1502 1198 369 0 0 0 chrX 4532163 4532204 -172441936 + (CA)n Simple_repeat Simple_repeat 2 42 0 3834 138 87 43 chrX 4532204 4532467 -172441673 - MER4-int LTR ERV1 -5400 1198 865 229 192 19 39 chrX 4532467 4532519 -172441621 - LTR49 LTR ERV1 -282 313 263 447 70 9 49 chrX 4532580 4532695 -172441445 - MER4-int LTR ERV1 -5769 829 654 2750 82 95 7 chrX 4532695 4533107 -172441033 + LTR7 LTR ERV1 1 448 -2 20591 86 31 21 chrX 4533109 4536064 -172438076 + HERVH LTR ERV1 1 2987 -4726 947 128 20 0 chrX 4536058 4536206 -172437934 + HERVH LTR ERV1 3140 3290 -4423 * 3365 110 10 6 chrX 4536196 4536696 -172437444 + HERVH LTR ERV1 3492 3993 -3720 4436 141 0 6 chrX 4536698 4537364 -172436776 + HERVH LTR ERV1 4488 5149 -2564 1418 130 19 0 chrX 4537365 4537581 -172436559 + HERVH LTR ERV1 5600 5819 -1894 2470 85 50 13 chrX 4537581 4537957 -172436183 + HERVH LTR ERV1 7324 7713 0 2770 85 95 5 chrX 4537957 4538368 -172435772 + LTR7 LTR ERV1 1 448 -2 224 181 0 34 chrX 4538376 4538443 -172435697 + A-rich Low_complexity Low_complexity 1 64 0 1321 71 0 0 chrX 4538566 4538721 -172435419 + AluSg/x SINE Alu 136 290 -22 2799 116 131 4 chrX 4538732 4539212 -172434928 - LTR49 LTR ERV1 -51 736 2 675 204 148 0 chrX 4540212 4540354 -172433786 + MER45A DNA AcHobo 16 178 0 186 250 17 0 chrX 4540398 4540458 -172433682 + MIR SINE MIR 202 262 0 * 227 241 145 0 chrX 4540450 4540533 -172433607 - MIR SINE MIR -107 155 61 209 206 14 82 chrX 4541310 4541383 -172432757 - L2 LINE L2 -208 3064 2997 * 271 280 25 63 chrX 4541372 4541402 -172432738 + MIR SINE MIR 36 66 -196 1854 190 69 52 chrX 4541402 4541897 -172432243 - MLT1D LTR MaLR 0 505 3 271 280 25 63 chrX 4541897 4542049 -172432091 + MIR SINE MIR 66 212 -50 748 150 105 46 chrX 4542164 4542317 -172431823 - MER63A DNA MER1_type -42 168 7 667 176 21 75 chrX 4543151 4543338 -172430802 + MER5B DNA MER1_type 1 177 -1 1600 90 202 101 chrX 4544051 4544418 -172429722 + MER4A LTR ERV1 1 404 -260 1395 170 4 48 chrX 4544519 4544790 -172429350 - AluJb SINE Alu -53 259 1 180 0 0 0 chrX 4544898 4544918 -172429222 + (TAA)n Simple_repeat Simple_repeat 1 20 0 466 335 56 0 chrX 4544927 4545143 -172428997 - MIR SINE MIR -17 245 19 181 302 79 0 chrX 4545180 4545243 -172428897 - MIR3 SINE MIR -14 194 127 2869 125 7 2 chrX 4545345 4545776 -172428364 - MER57B LTR ERV1 0 434 2 2490 82 0 0 chrX 4546939 4547242 -172426898 - AluSg SINE Alu -7 303 1 25 0 0 0 chrX 4547287 4547312 -172426828 + AT_rich Low_complexity Low_complexity 1 25 0 711 279 28 5 chrX 4547610 4547825 -172426315 - MIR SINE MIR -3 259 40 1611 208 13 92 chrX 4549161 4549228 -172424912 - MLT1D LTR MaLR 0 505 434 1423 120 10 0 chrX 4549228 4549436 -172424704 - L1PA15 LINE L1 -6 6159 5950 2300 105 3 0 chrX 4549444 4549748 -172424392 - AluSp SINE Alu -8 305 1 1611 208 13 92 chrX 4549748 4550147 -172423993 - MLT1D LTR MaLR -78 427 68 270 325 78 36 chrX 4550328 4550494 -172423646 - MIR SINE MIR 0 262 90 192 77 0 0 chrX 4550494 4550520 -172423620 + (TTA)n Simple_repeat Simple_repeat 2 27 0 890 146 0 0 chrX 4550520 4550643 -172423497 - FLAM_C SINE Alu -20 123 1 204 274 69 39 chrX 4551867 4551969 -172422171 + L2 LINE L2 3162 3266 -6 1308 202 27 0 chrX 4552015 4552273 -172421867 + L1MD3 LINE L1 7729 7993 -2 2383 70 3 3 chrX 4552491 4552792 -172421348 + AluY SINE Alu 1 301 -10 441 268 225 0 chrX 4554577 4554719 -172419421 + MER5A DNA MER1_type 9 182 -7 353 246 49 28 chrX 4555000 4555142 -172418998 + MIR3 SINE MIR 15 159 -49 228 250 114 71 chrX 4555170 4555310 -172418830 + L2 LINE L2 3066 3211 -102 468 80 23 34 chrX 4556343 4556431 -172417709 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 341 85 0 0 chrX 4556831 4556878 -172417262 + MADE1 DNA Mariner 34 80 0 311 212 76 0 chrX 4556882 4556948 -172417192 - MIR SINE MIR -64 144 74 2564 75 0 0 chrX 4557897 4558205 -172415935 + AluSg SINE Alu 1 308 -2 2417 87 0 3 chrX 4558222 4558522 -172415618 + AluSg SINE Alu 1 299 -11 2188 130 0 0 chrX 4558848 4559149 -172414991 + AluSx SINE Alu 1 301 -11 22 35 0 0 chrX 4559577 4559606 -172414534 + AT_rich Low_complexity Low_complexity 1 29 0 6019 96 54 3 chrX 4559928 4560818 -172413322 - Tigger3b DNA MER2_type -2 1229 295 1780 160 0 0 chrX 4560823 4561086 -172413054 + AluJb SINE Alu 5 267 -45 198 302 0 0 chrX 4563174 4563227 -172410913 + L2 LINE L2 3219 3271 -1 480 281 34 92 chrX 4564757 4564995 -172409145 - MIR SINE MIR -3 259 36 1203 200 60 12 chrX 4565080 4565539 -172408601 + MLT1E1 LTR MaLR 109 650 -4 1174 228 62 53 chrX 4566383 4566560 -172407580 - MER58B DNA MER1_type -2079 341 158 4287 88 11 0 chrX 4566560 4567106 -172407034 - L1PA13 LINE L1 0 6163 5612 1174 228 62 53 chrX 4567106 4567266 -172406874 - MER58B DNA MER1_type -2262 158 1 22 0 0 0 chrX 4567589 4567611 -172406529 + AT_rich Low_complexity Low_complexity 1 22 0 841 192 0 0 chrX 4567611 4567736 -172406404 - FLAM_A SINE Alu -8 125 1 199 128 0 43 chrX 4568175 4568222 -172405918 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 194 253 0 13 chrX 4568775 4568854 -172405286 + (TA)n Simple_repeat Simple_repeat 1 78 0 1251 175 29 107 chrX 4569857 4569957 -172404183 - L1MD3 LINE L1 -66 7929 7823 2100 140 0 3 chrX 4569957 4570257 -172403883 + AluSx SINE Alu 1 299 -13 1251 175 29 107 chrX 4570257 4570539 -172403601 - L1MD3 LINE L1 -172 7823 7577 3327 155 103 5 chrX 4570540 4571181 -172402959 + MER39 LTR ERV1 1 644 -9 1177 183 48 44 chrX 4571181 4571454 -172402686 - L1MD3 LINE L1 -412 7583 7310 2974 104 33 19 chrX 4571719 4571786 -172402354 - MSTC LTR MaLR 0 428 363 1386 167 61 64 chrX 4571786 4572097 -172402043 - AluJo SINE Alu 0 312 3 2974 104 33 19 chrX 4572097 4572451 -172401689 - MSTC LTR MaLR -65 363 1 1423 140 44 0 chrX 4572477 4572727 -172401413 + MER63 DNA MER1_type 767 1027 -33 2233 111 3 0 chrX 4573583 4573880 -172400260 - AluSp SINE Alu -15 298 1 2286 118 0 0 chrX 4574544 4574848 -172399292 + AluSx SINE Alu 1 304 -8 3065 214 84 23 chrX 4574860 4575677 -172398463 + L1MC4 LINE L1 7162 8028 -14 3515 48 65 5 chrX 4576086 4576503 -172397637 - MLT2A1 LTR ERVL -2 442 1 981 149 0 19 chrX 4576515 4576669 -172397471 + FRAM SINE Alu 1 143 -33 429 20 0 0 chrX 4576669 4576719 -172397421 + (CA)n Simple_repeat Simple_repeat 1 50 0 321 303 21 31 chrX 4576811 4576970 -172397170 - MIR SINE MIR -48 214 56 346 212 66 133 chrX 4577237 4577478 -172396662 + MER112 DNA MER1_type 28 252 -8 1439 220 137 39 chrX 4578752 4579212 -172394928 + MLT1D LTR MaLR 1 505 0 205 281 18 60 chrX 4579593 4579744 -172394396 + L2 LINE L2 2741 3272 0 294 289 157 0 chrX 4579783 4579904 -172394236 + L2 LINE L2 3133 3272 0 1176 123 0 35 chrX 4579914 4580085 -172394055 + AluJb SINE Alu 132 296 -16 191 317 83 0 chrX 4580847 4580907 -172393233 + L2 LINE L2 3168 3232 -40 2145 98 6 38 chrX 4580993 4581310 -172392830 + AluSx SINE Alu 1 307 -5 1738 144 43 20 chrX 4581451 4581750 -172392390 + AluJb SINE Alu 1 306 -6 198 261 235 17 chrX 4582785 4582904 -172391236 + MIR3 SINE MIR 58 202 -6 192 319 11 21 chrX 4587385 4587479 -172386661 + MIR SINE MIR 55 147 -61 521 242 152 0 chrX 4588675 4588840 -172385300 + MIR SINE MIR 73 262 0 42 48 0 0 chrX 4588948 4589011 -172385129 + AT_rich Low_complexity Low_complexity 1 63 0 202 129 0 0 chrX 4589165 4589196 -172384944 - MIR SINE MIR -68 140 110 932 87 16 0 chrX 4589389 4589515 -172384625 - AluSg/x SINE Alu -8 301 174 352 261 90 0 chrX 4590492 4590603 -172383537 - MIR SINE MIR -49 213 93 272 342 0 54 chrX 4590840 4590951 -172383189 - L3 LINE CR1 -13 1564 1460 684 249 109 13 chrX 4591132 4591361 -172382779 - MIR SINE MIR 0 262 12 1032 113 0 0 chrX 4591484 4591617 -172382523 - FLAM_C SINE Alu 0 133 1 2264 91 3 3 chrX 4591826 4592122 -172382018 - AluSc SINE Alu 0 309 14 738 221 127 0 chrX 4592503 4592661 -172381479 + MER45A DNA AcHobo 1 178 0 1839 137 68 34 chrX 4593626 4593948 -172380192 - MER1B DNA MER1_type 0 337 5 1360 190 135 5 chrX 4593961 4594340 -172379800 - Charlie4a DNA MER1_type -56 452 25 2372 45 0 14 chrX 4594414 4594729 -172379411 - AluY SINE Alu 0 311 1 316 292 31 45 chrX 4595066 4595220 -172378920 - MIR SINE MIR -66 142 42 203 138 0 0 chrX 4595456 4595485 -172378655 + (TGG)n Simple_repeat Simple_repeat 1 29 0 207 0 0 0 chrX 4595592 4595615 -172378525 + (T)n Simple_repeat Simple_repeat 1 23 0 374 252 0 55 chrX 4595834 4595961 -172378179 + MER77 LTR ERV1 66 185 -420 974 251 102 91 chrX 4595994 4596545 -172377595 + MER21B LTR ERV1 140 696 -167 196 291 47 23 chrX 4596603 4596689 -172377451 - MIR SINE MIR -62 200 113 2397 59 7 10 chrX 4596807 4597111 -172377029 + AluSq SINE Alu 1 303 -10 467 256 66 44 chrX 4597197 4597334 -172376806 - L2 LINE L2 -1 3312 3173 6083 31 1 1 chrX 4597354 4598031 -172376109 - SVA Other Other -1 1385 709 368 338 65 78 chrX 4598719 4599180 -172374960 - L2 LINE L2 0 3272 2818 246 273 189 34 chrX 4599228 4599466 -172374674 - L2 LINE L2 -609 2705 2431 2037 211 45 5 chrX 4600212 4600634 -172373506 + MLT1C LTR MaLR 2 440 -27 302 235 141 0 chrX 4600660 4600745 -172373395 - MIR3 SINE MIR -30 178 82 1293 149 8 47 chrX 4600992 4601081 -172373059 - L1MB7 LINE L1 -80 6104 6016 844 157 3 138 chrX 4601081 4601296 -172372844 - L1MB7 LINE L1 -288 5896 5890 17392 27 0 1 chrX 4601296 4603995 -172370145 - L1PA3 LINE L1 -3 6152 3457 844 157 3 138 chrX 4603995 4604135 -172370005 - L1MB7 LINE L1 -294 5890 5733 2808 150 28 78 chrX 4604363 4604461 -172369679 - LTR36 LTR ERV1 -2 609 508 5842 79 19 1 chrX 4604461 4605230 -172368910 - L1MA1 LINE L1 0 6302 5520 2808 150 28 78 chrX 4605230 4605730 -172368410 - LTR36 LTR ERV1 -103 508 41 191 185 0 93 chrX 4606002 4606056 -172368084 + L2 LINE L2 3219 3267 -5 313 179 0 18 chrX 4607377 4607433 -172366707 + MLT1E LTR MaLR 1 55 -487 962 196 141 28 chrX 4607558 4607988 -172366152 + MLT1E LTR MaLR 81 593 0 2025 140 0 3 chrX 4611375 4611675 -172362465 + AluJo SINE Alu 1 299 -13 537 290 78 42 chrX 4612083 4612300 -172361840 - MIR SINE MIR -34 228 4 260 204 0 0 chrX 4613013 4613057 -172361083 + MLT1E2 LTR MaLR 1 44 -580 1664 236 73 52 chrX 4613103 4613581 -172360559 + MLT1E2 LTR MaLR 139 626 0 290 298 0 75 chrX 4613995 4614072 -172360068 - L2 LINE L2 -176 3096 3015 2022 89 4 0 chrX 4614072 4614329 -172359811 + AluSp SINE Alu 44 301 -12 290 298 0 75 chrX 4614329 4614438 -172359702 - L2 LINE L2 -257 3015 2929 240 273 15 0 chrX 4614620 4614686 -172359454 + L2 LINE L2 1885 1951 -1363 1701 152 17 17 chrX 4614744 4615041 -172359099 + AluJb SINE Alu 1 297 -15 1897 118 3 17 chrX 4615068 4615357 -172358783 - L1MA8 LINE L1 -7 6284 6000 940 271 93 31 chrX 4615452 4615872 -172358268 - L2 LINE L2 -697 2617 2172 359 331 108 14 chrX 4615878 4616165 -172357975 - L1 LINE L1 -1051 5095 4782 1014 281 62 31 chrX 4616204 4616698 -172357442 + L1M3 LINE L1 5293 5838 -330 337 265 282 6 chrX 4616698 4616868 -172357272 - L2 LINE L2 -2 3311 3095 1072 194 5 0 chrX 4616868 4617064 -172357076 - L1MC3 LINE L1 -364 7421 7225 264 100 0 0 chrX 4618116 4618156 -172355984 + (GA)n Simple_repeat Simple_repeat 2 41 0 345 244 85 104 chrX 4618197 4618361 -172355779 + HAL1 LINE L1 61 221 -2286 1944 190 53 31 chrX 4618564 4619016 -172355124 + MLT1C LTR MaLR 3 464 -3 186 212 0 0 chrX 4619967 4620000 -172354140 - L2 LINE L2 -2180 1134 1102 195 42 0 0 chrX 4620326 4620350 -172353790 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 366 261 43 26 chrX 4620360 4620475 -172353665 - MIR3 SINE MIR -52 156 40 1541 99 85 0 chrX 4620806 4621018 -172353122 + MER30 DNA MER1_type 1 230 0 649 273 23 11 chrX 4621554 4621730 -172352410 - MER5B DNA MER1_type 0 178 1 1992 133 0 3 chrX 4621842 4622152 -172351988 - AluSx SINE Alu 0 309 1 2267 64 0 0 chrX 4622383 4622650 -172351490 + AluSx SINE Alu 1 267 -45 237 297 144 17 chrX 4624030 4624148 -172349992 + L2 LINE L2 3140 3272 0 1671 185 102 6 chrX 4624263 4624615 -172349525 + MER58D DNA MER1_type 1 386 0 1938 140 4 4 chrX 4625025 4625335 -172348805 + AluJb SINE Alu 4 313 0 297 0 0 0 chrX 4625495 4625513 -172348627 + (TG)n Simple_repeat Simple_repeat 1 51 0 297 0 0 0 chrX 4625513 4625546 -172348594 + (TG)n Simple_repeat Simple_repeat 2 34 0 575 203 12 49 chrX 4626042 4626205 -172347935 + MIR SINE MIR 106 262 0 306 248 167 0 chrX 4626991 4627113 -172347027 - MIR SINE MIR -62 146 16 236 54 54 0 chrX 4627221 4627258 -172346882 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 499 299 91 32 chrX 4627328 4627733 -172346407 - L1ME4a LINE L1 -3 6118 5690 1802 122 20 0 chrX 4628619 4628905 -172345235 - AluJo SINE Alu 0 316 26 2417 38 42 0 chrX 4628947 4629236 -172344904 - AluY SINE Alu -9 302 2 1908 120 174 23 chrX 4629720 4630071 -172344069 - MER4A LTR ERV1 0 664 261 605 124 21 10 chrX 4630071 4630168 -172343972 - MER4A LTR ERV1 -566 98 1 220 383 109 34 chrX 4630710 4630885 -172343255 + MER5A DNA MER1_type 1 188 -1 822 179 19 26 chrX 4630891 4631047 -172343093 + MER5A DNA MER1_type 31 185 -4 862 201 29 6 chrX 4631074 4631248 -172342892 + MER5B DNA MER1_type 1 178 0 1261 183 117 18 chrX 4631286 4631559 -172342581 + AluJo SINE Alu 1 300 -12 539 210 0 0 chrX 4631681 4631781 -172342359 - MER5A DNA MER1_type -81 108 9 321 322 33 39 chrX 4631832 4632012 -172342128 + L2 LINE L2 2235 2413 -901 391 301 9 9 chrX 4632180 4632293 -172341847 + L2 LINE L2 3158 3270 -2 459 52 0 0 chrX 4632294 4632352 -172341788 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 2036 116 41 7 chrX 4632480 4632774 -172341366 - AluSx SINE Alu -8 304 1 205 188 0 0 chrX 4632796 4632828 -172341312 + L2 LINE L2 3201 3232 -81 240 304 14 0 chrX 4633523 4633618 -172340522 + (CA)n Simple_repeat Simple_repeat 1 96 0 492 86 0 0 chrX 4633620 4633690 -172340450 + (TA)n Simple_repeat Simple_repeat 2 71 0 2373 96 3 0 chrX 4634589 4634890 -172339250 + AluSx SINE Alu 1 302 -10 28 86 0 0 chrX 4634919 4634989 -172339151 + AT_rich Low_complexity Low_complexity 1 70 0 236 220 0 34 chrX 4635115 4635174 -172338966 + L1MC4 LINE L1 6647 6703 -1339 247 208 62 115 chrX 4636442 4636572 -172337568 + MIR SINE MIR 91 213 -49 1643 105 5 0 chrX 4638190 4638409 -172335731 - AluSg/x SINE Alu -10 302 83 2388 84 7 0 chrX 4640784 4641092 -172333048 - AluSg SINE Alu 0 310 1 316 244 52 0 chrX 4645162 4645247 -172328893 - MIR SINE MIR -51 157 68 449 254 59 0 chrX 4645458 4645576 -172328564 + MER94 DNA DNA 2 126 -8 1790 151 10 10 chrX 4645932 4646230 -172327910 + AluJo SINE Alu 3 300 -12 488 173 0 0 chrX 4646599 4646674 -172327466 - AluJ/FLAM SINE Alu -236 76 2 529 134 116 71 chrX 4647524 4647636 -172326504 + MER63 DNA MER1_type 1 743 -93 710 320 76 12 chrX 4647784 4648273 -172325867 + L2 LINE L2 2544 3068 -245 401 247 22 0 chrX 4648307 4648396 -172325744 - MIR SINE MIR 0 262 172 1031 195 44 22 chrX 4648405 4648631 -172325509 - MER46C DNA MER2_type 0 338 108 49 107 0 0 chrX 4648631 4648827 -172325313 + AT_rich Low_complexity Low_complexity 1 196 0 235 193 101 118 chrX 4648827 4648946 -172325194 - MER46C DNA MER2_type -203 135 19 2187 113 0 0 chrX 4648947 4649265 -172324875 - AluSq SINE Alu 0 318 1 376 61 0 0 chrX 4649272 4649321 -172324819 - MIR SINE MIR -107 155 107 368 256 136 42 chrX 4649341 4649532 -172324608 + L2 LINE L2 3105 3313 0 242 258 101 22 chrX 4650037 4650126 -172324014 - L2 LINE L2 -40 3232 3137 1033 267 44 85 chrX 4650318 4650846 -172323294 + MLT1J LTR MaLR 6 511 0 833 196 101 6 chrX 4651539 4651707 -172322433 - MER3 DNA MER1_type -25 184 1 509 176 133 66 chrX 4651721 4651931 -172322209 - MER58 DNA MER1_type -5 2415 1 207 272 109 11 chrX 4652180 4652272 -172321868 + L2 LINE L2 3208 3308 -5 343 202 0 140 chrX 4652820 4652934 -172321206 - MER58 DNA MER1_type -243 98 1 255 212 136 68 chrX 4653589 4653721 -172320419 - MIR SINE MIR -14 248 108 2185 120 3 0 chrX 4653952 4654253 -172319887 + AluSx SINE Alu 1 302 -10 3057 82 0 3 chrX 4654348 4654713 -172319427 - THE1B LTR MaLR 0 364 1 387 237 52 21 chrX 4654801 4654898 -172319242 - L2 LINE L2 -3 3269 3170 223 326 11 21 chrX 4655559 4655654 -172318486 + MIR3 SINE MIR 114 207 -1 2110 109 0 0 chrX 4655867 4656172 -172317968 - AluSx SINE Alu 0 305 1 315 313 59 84 chrX 4656222 4656545 -172317595 + L1ME4a LINE L1 5718 6032 -89 1347 307 48 13 chrX 4656716 4657489 -172316651 - L2 LINE L2 -8 3305 2507 233 221 128 12 chrX 4657503 4657589 -172316551 - L2 LINE L2 -1482 1832 1737 246 156 0 0 chrX 4657634 4657679 -172316461 + CT-rich Low_complexity Low_complexity 1 45 0 714 218 184 49 chrX 4657682 4658030 -172316110 + MLT1G LTR MaLR 196 590 0 1076 203 98 67 chrX 4659298 4659614 -172314526 - MER58B DNA MER1_type -13 328 3 274 308 29 0 chrX 4659964 4660068 -172314072 + MIR SINE MIR 49 155 -107 577 245 39 101 chrX 4660205 4660452 -172313688 - L1ME4a LINE L1 -225 5896 5670 3194 67 15 0 chrX 4660452 4660854 -172313286 - L1PA10 LINE L1 -1 6167 5760 577 245 39 101 chrX 4660854 4660912 -172313228 - L1ME4a LINE L1 -451 5670 5610 241 333 0 70 chrX 4661592 4661732 -172312408 - MIR SINE MIR -71 191 61 2047 153 80 49 chrX 4661732 4662184 -172311956 + MER31B LTR ERV1 1 466 0 241 333 0 70 chrX 4662184 4662199 -172311941 - MIR SINE MIR -201 61 47 24 32 0 0 chrX 4662951 4662982 -172311158 + AT_rich Low_complexity Low_complexity 1 31 0 1183 178 84 0 chrX 4663364 4663566 -172310574 - MER20 DNA MER1_type 0 219 1 491 306 33 0 chrX 4663944 4664127 -172310013 - MIR SINE MIR 0 262 74 798 241 105 8 chrX 4664374 4664805 -172309335 + LTR33 LTR ERVL 14 512 -9 404 289 19 13 chrX 4664815 4664971 -172309169 + L1M4 LINE L1 4490 4646 -1500 434 188 20 30 chrX 4665024 4665125 -172309015 + MER20B DNA MER1_type 682 781 -2 2200 116 0 3 chrX 4665374 4665677 -172308463 - AluSg SINE Alu -8 302 1 43809 50 2 1 chrX 4665768 4671903 -172302237 + L1PA5 LINE L1 3 6145 -9 2867 10 0 0 chrX 4672553 4672864 -172301276 - AluYa5 SINE Alu 0 311 1 1361 108 128 5 chrX 4673153 4673357 -172300783 - MER30 DNA MER1_type -1 229 1 727 52 0 4 chrX 4673568 4673667 -172300473 + L1PA5 LINE L1 6044 6142 -13 225 0 0 0 chrX 4673667 4673692 -172300448 + (TA)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chrX 4673984 4674007 -172300133 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1878 155 4 0 chrX 4674011 4674288 -172299852 - AluSx SINE Alu -34 278 1 451 296 50 5 chrX 4674742 4674962 -172299178 - L1MC4 LINE L1 0 8042 7813 31048 114 16 54 chrX 4675006 4681410 -172292730 + L1PA8 LINE L1 12 6166 -6 401 214 0 31 chrX 4682031 4682190 -172291950 + GA-rich Low_complexity Low_complexity 3 156 0 192 40 0 0 chrX 4682328 4682353 -172291787 + (GA)n Simple_repeat Simple_repeat 2 26 0 3300 160 12 35 chrX 4682361 4682911 -172291229 - MER68 LTR ERV1 0 562 24 2170 102 10 3 chrX 4682911 4683204 -172290936 - AluSq SINE Alu -18 295 1 3300 160 12 35 chrX 4683204 4683228 -172290912 - MER68 LTR ERV1 -538 24 1 335 108 31 0 chrX 4683241 4683306 -172290834 + (CATA)n Simple_repeat Simple_repeat 2 68 0 536 308 92 15 chrX 4683351 4683679 -172290461 - L1MC4a LINE L1 -1771 6037 5685 587 108 63 36 chrX 4683966 4684077 -172290063 + MER53 DNA DNA 76 189 0 710 216 0 0 chrX 4684111 4684236 -172289904 - FLAM_C SINE Alu -7 126 2 267 217 72 43 chrX 4684328 4684397 -172289743 + MIR3 SINE MIR 5 75 -133 2453 90 0 0 chrX 4684443 4684754 -172289386 + AluSq SINE Alu 1 311 -2 524 228 188 22 chrX 4686828 4687120 -172287020 - MLT1H LTR MaLR -2 553 229 290 293 47 28 chrX 4687161 4687267 -172286873 - MLT1H LTR MaLR -415 127 20 21 0 0 0 chrX 4687682 4687703 -172286437 + AT_rich Low_complexity Low_complexity 1 21 0 281 266 175 22 chrX 4687766 4687945 -172286195 + L1ME LINE L1 5412 5577 -544 554 276 49 6 chrX 4688164 4688327 -172285813 - MER5B DNA MER1_type -6 172 3 207 0 0 0 chrX 4688403 4688426 -172285714 + (A)n Simple_repeat Simple_repeat 1 23 0 2063 156 0 0 chrX 4688550 4688857 -172285283 - AluJo SINE Alu -5 307 1 319 85 21 0 chrX 4689439 4689486 -172284654 - MER5A DNA MER1_type -141 48 1 2174 123 0 10 chrX 4689811 4690139 -172284001 - AluSx SINE Alu 0 312 1 486 305 13 26 chrX 4690152 4690306 -172283834 + MIR3 SINE MIR 54 205 -3 32665 107 10 59 chrX 4690395 4693038 -172281102 + L1PA7 LINE L1 13 2784 -3370 2241 119 3 0 chrX 4693038 4693350 -172280790 + AluSp SINE Alu 1 313 0 32665 107 10 59 chrX 4693350 4697163 -172276977 + L1PA7 LINE L1 2784 6139 -15 1978 137 10 10 chrX 4697296 4697595 -172276545 + AluSq SINE Alu 1 299 -14 2002 141 3 25 chrX 4697670 4697845 -172276295 - AluJb SINE Alu 0 312 146 2433 70 3 0 chrX 4697845 4698147 -172275993 - AluY SINE Alu -8 303 1 2002 141 3 25 chrX 4698147 4698290 -172275850 - AluJb SINE Alu -166 146 1 284 179 0 19 chrX 4698462 4698723 -172275417 + AluJo SINE Alu 1 338 0 709 125 16 16 chrX 4698942 4699070 -172275070 + MER20 DNA MER1_type 5 132 -87 2348 77 3 0 chrX 4699843 4700130 -172274010 + AluSp SINE Alu 3 290 -23 306 50 0 0 chrX 4700283 4700323 -172273817 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1713 190 103 60 chrX 4700636 4701100 -172273040 - MER31A LTR ERV1 0 485 2 795 177 8 15 chrX 4701283 4701413 -172272727 + FLAM_A SINE Alu 2 130 -3 386 119 0 15 chrX 4701423 4701490 -172272650 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 745 170 0 0 chrX 4702168 4702280 -172271860 + MER81 DNA DNA 3 114 0 372 337 47 18 chrX 4702347 4702516 -172271624 - MIR3 SINE MIR -19 189 16 806 199 0 0 chrX 4702801 4702932 -172271208 - FLAM_A SINE Alu -2 131 1 1890 109 12 4 chrX 4702956 4703212 -172270928 - AluSx SINE Alu -27 285 28 2601 40 0 0 chrX 4703541 4703844 -172270296 - AluY SINE Alu -8 303 1 198 0 0 0 chrX 4704402 4704424 -172269716 + (T)n Simple_repeat Simple_repeat 1 22 0 383 268 142 0 chrX 4704673 4704800 -172269340 - MIR SINE MIR -110 152 8 1088 231 47 0 chrX 4707900 4708112 -172266028 - MER58A DNA MER1_type 0 224 3 292 262 63 74 chrX 4708228 4708400 -172265740 - MIR3 SINE MIR -61 147 1 246 81 0 0 chrX 4708501 4708538 -172265602 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 302 114 0 0 chrX 4708538 4708582 -172265558 + U2 snRNA snRNA 19 62 -126 2947 177 18 14 chrX 4708584 4709149 -172264991 - L1MB4 LINE L1 -19 6161 5595 1047 170 95 10 chrX 4709751 4709951 -172264189 - MER20 DNA MER1_type 0 219 3 835 223 19 43 chrX 4709952 4710163 -172263977 - MER33 DNA MER1_type -114 210 5 625 184 40 24 chrX 4711218 4711343 -172262797 + FLAM_A SINE Alu 1 127 -6 2319 104 10 0 chrX 4711815 4712123 -172262017 - AluSp SINE Alu -2 311 1 2890 195 26 18 chrX 4712131 4712701 -172261439 - L1MB5 LINE L1 -2 6172 5598 192 77 0 0 chrX 4712715 4712741 -172261399 + (T)n Simple_repeat Simple_repeat 1 26 0 482 293 78 28 chrX 4713171 4713458 -172260682 + L1MEc LINE L1 1500 1751 -861 2157 128 0 3 chrX 4713607 4713903 -172260237 + AluJb SINE Alu 1 295 -17 270 247 43 0 chrX 4713904 4713997 -172260143 + L1MEc LINE L1 2208 2304 -4092 25 0 0 0 chrX 4714194 4714219 -172259921 + AT_rich Low_complexity Low_complexity 1 25 0 2242 106 3 0 chrX 4714267 4714570 -172259570 + AluSx SINE Alu 1 304 -8 225 175 208 58 chrX 4715310 4715430 -172258710 + L1ME4a LINE L1 5983 6120 -1 653 263 82 47 chrX 4716581 4716946 -172257194 + L1MB7 LINE L1 5438 5815 -1993 1360 164 26 74 chrX 4717290 4717556 -172256584 + L1MB7 LINE L1 5885 6135 -49 2287 117 0 0 chrX 4717556 4717865 -172256275 - AluSx SINE Alu -3 309 1 1360 164 26 74 chrX 4717865 4717910 -172256230 + L1MB7 LINE L1 6135 6181 -3 1066 177 0 0 chrX 4719342 4719506 -172254634 - FRAM SINE Alu -2 164 1 237 33 0 0 chrX 4720219 4720249 -172253891 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 237 333 10 10 chrX 4721641 4721743 -172252397 + MIR SINE MIR 68 169 -93 243 0 0 0 chrX 4721894 4721921 -172252219 + (CA)n Simple_repeat Simple_repeat 2 28 0 277 261 19 64 chrX 4722025 4722047 -172252093 + L1ME4a LINE L1 5926 5947 -174 2413 77 0 0 chrX 4722047 4722344 -172251796 + AluY SINE Alu 5 301 -10 277 261 19 64 chrX 4722344 4722478 -172251662 + L1ME4a LINE L1 5947 6075 -46 840 168 183 208 chrX 4722808 4723140 -172251000 + MLT1A1 LTR MaLR 1 323 -73 1987 69 126 0 chrX 4723140 4723402 -172250738 - AluSp SINE Alu -17 296 2 840 168 183 208 chrX 4723402 4723473 -172250667 + MLT1A1 LTR MaLR 323 394 -2 2378 81 0 16 chrX 4724111 4724419 -172249721 - AluSx SINE Alu -9 303 1 1774 220 15 3 chrX 4724475 4724812 -172249328 + MER58B DNA MER1_type 1 341 0 331 314 28 28 chrX 4724822 4724989 -172249151 - MIR SINE MIR -28 180 13 241 260 68 14 chrX 4725024 4725097 -172249043 - L1ME LINE L1 -297 5824 5748 2283 113 0 0 chrX 4725768 4726061 -172248079 + AluSx SINE Alu 1 293 -19 465 267 33 0 chrX 4726240 4726360 -172247780 - MER94 DNA DNA -1 133 10 1527 220 121 20 chrX 4726437 4726615 -172247525 + MLT1D LTR MaLR 5 164 -341 1897 137 3 36 chrX 4726615 4726922 -172247218 + AluJo SINE Alu 2 298 -14 1527 220 121 20 chrX 4726922 4727198 -172246942 + MLT1D LTR MaLR 164 505 0 2046 101 22 4 chrX 4727571 4727884 -172246256 + AluSq SINE Alu 1 318 0 2338 86 0 7 chrX 4728301 4728614 -172245526 + AluSx SINE Alu 1 312 0 281 269 201 52 chrX 4728680 4728929 -172245211 + L3 LINE CR1 652 937 -640 393 22 0 0 chrX 4728942 4728988 -172245152 + (CA)n Simple_repeat Simple_repeat 2 47 0 1534 156 31 49 chrX 4729018 4729306 -172244834 + MER58 DNA MER1_type 1 283 -58 1530 206 108 30 chrX 4729691 4730124 -172244016 + MLT1C LTR MaLR 1 467 0 1224 172 21 21 chrX 4730309 4730547 -172243593 - L1MD2 LINE L1 0 6359 6122 2893 160 66 19 chrX 4731051 4731582 -172242558 - MER68 LTR ERV1 -4 558 3 1523 259 156 31 chrX 4731597 4732380 -172241760 - HAL1 LINE L1 0 2507 1627 2123 124 3 3 chrX 4732835 4733134 -172241006 - AluSx SINE Alu -13 299 1 1093 157 9 65 chrX 4733190 4733406 -172240734 + MER46A DNA MER2_type 32 235 -1 2413 73 16 3 chrX 4733693 4733996 -172240144 + AluSp SINE Alu 1 307 -6 896 147 0 29 chrX 4734030 4734166 -172239974 + FLAM_A SINE Alu 1 132 -1 2353 171 10 10 chrX 4734395 4734786 -172239354 + MSTD LTR MaLR 1 391 -5 237 195 0 0 chrX 4734836 4734877 -172239263 + MER58 DNA MER1_type 38 78 -137 1405 174 156 44 chrX 4734878 4735268 -172238872 + MLT1D LTR MaLR 2 435 -70 477 165 13 0 chrX 4735273 4735352 -172238788 + MER58 DNA MER1_type 2341 2420 0 1465 268 92 15 chrX 4735673 4736151 -172237989 + MLT1G1 LTR MaLR 74 588 -7 862 181 82 16 chrX 4737362 4737544 -172236596 - L1M4 LINE L1 -1052 5094 4901 202 312 130 7 chrX 4737945 4738099 -172236041 + MER5B DNA MER1_type 1 173 -5 22 35 0 0 chrX 4738428 4738457 -172235683 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 4738565 4738588 -172235552 + GC_rich Low_complexity Low_complexity 1 23 0 246 256 0 23 chrX 4738734 4738820 -172235320 + (CGG)n Simple_repeat Simple_repeat 2 85 0 297 250 9 37 chrX 4738828 4738936 -172235204 + G-rich Low_complexity Low_complexity 4 108 0 1503 231 43 5 chrX 4739191 4739563 -172234577 + MER58D DNA MER1_type 1 386 0 1320 158 29 0 chrX 4741057 4741266 -172232874 - MER20 DNA MER1_type -3 216 2 421 193 45 23 chrX 4741291 4741379 -172232761 - MLT1G1 LTR MaLR -282 313 224 258 158 0 0 chrX 4741423 4741461 -172232679 - MLT1I LTR MaLR -274 135 98 204 296 28 14 chrX 4741806 4741877 -172232263 + L2 LINE L2 3238 3309 -4 276 330 52 0 chrX 4741896 4741993 -172232147 - MIR SINE MIR -88 120 19 1445 180 46 4 chrX 4742066 4742378 -172231762 - MER33 DNA MER1_type -11 313 1 287 275 150 31 chrX 4742650 4742810 -172231330 - L1MC4 LINE L1 -54 7988 7810 * 437 176 118 0 chrX 4742780 4742882 -172231258 + L1MB8 LINE L1 4926 5039 -1107 1484 101 15 0 chrX 4742882 4743175 -172230965 - AluJb SINE Alu 0 405 110 4192 174 29 55 chrX 4743198 4743389 -172230751 + L1MB8 LINE L1 5007 5201 -977 2418 79 0 10 chrX 4743389 4743693 -172230447 + AluSg SINE Alu 1 301 -9 4192 174 29 55 chrX 4743693 4743818 -172230322 + L1MB8 LINE L1 5201 5328 -850 3760 136 80 0 chrX 4743818 4744419 -172229721 + L1MC1 LINE L1 5685 6333 0 4192 174 29 55 chrX 4744419 4744498 -172229642 + L1MB8 LINE L1 5328 5408 -770 2357 96 0 3 chrX 4744498 4744810 -172229330 + AluSx SINE Alu 1 311 -1 4192 174 29 55 chrX 4744810 4745605 -172228535 + L1MB8 LINE L1 5408 6177 -1 329 251 101 84 chrX 4745745 4745924 -172228216 - L1MC5 LINE L1 -781 7180 6999 * 458 249 64 115 chrX 4745918 4746094 -172228046 + L1MC4 LINE L1 6780 6935 -1107 660 208 24 8 chrX 4746094 4746219 -172227921 + FLAM_A SINE Alu 1 127 -6 458 249 64 115 chrX 4746219 4746355 -172227785 + L1MC4 LINE L1 6935 7076 -966 438 256 137 21 chrX 4746955 4747115 -172227025 - MIR SINE MIR -62 146 2 398 287 115 13 chrX 4747264 4747421 -172226719 + L2 LINE L2 2118 2290 -1024 812 286 25 0 chrX 4747429 4747632 -172226508 + MER58A DNA MER1_type 1 208 -16 306 296 136 70 chrX 4747680 4747951 -172226189 + L2 LINE L2 2395 2647 -666 2183 130 0 0 chrX 4747951 4748259 -172225881 - AluSx SINE Alu -4 308 1 306 296 136 70 chrX 4748259 4748520 -172225620 + L2 LINE L2 2647 2889 -424 2613 59 0 0 chrX 4748520 4748826 -172225314 - AluY SINE Alu -5 306 1 306 296 136 70 chrX 4748826 4749110 -172225030 + L2 LINE L2 2889 3267 -46 1028 157 52 33 chrX 4749194 4749404 -172224736 - MER58 DNA MER1_type -126 215 2 276 30 0 0 chrX 4749730 4749763 -172224377 + (CA)n Simple_repeat Simple_repeat 2 34 0 416 285 162 1 chrX 4750762 4750939 -172223201 - MIR SINE MIR -19 243 41 28 0 0 0 chrX 4751844 4751872 -172222268 + AT_rich Low_complexity Low_complexity 1 28 0 448 187 0 0 chrX 4752051 4752126 -172222014 + MER116 DNA Mariner 3 77 -3 1240 160 38 9 chrX 4752213 4752426 -172221714 + MER20 DNA MER1_type 1 219 0 1333 203 29 8 chrX 4753026 4753328 -172220812 - L1MD3 LINE L1 -1 7994 7600 2023 121 0 46 chrX 4753508 4753815 -172220325 - AluSx SINE Alu -19 293 1 471 301 7 0 chrX 4753817 4753960 -172220180 + Charlie8 DNA MER1_type 93 236 -2181 1890 162 0 10 chrX 4754784 4755086 -172219054 - AluJb SINE Alu -13 299 1 1266 70 13 0 chrX 4755613 4755769 -172218371 - L1PA10 LINE L1 -4 6164 6007 680 270 64 15 chrX 4755875 4756079 -172218061 - MIR SINE MIR -36 226 13 2217 111 3 0 chrX 4756438 4756735 -172217405 + AluSq SINE Alu 1 298 -15 25 31 0 0 chrX 4756868 4756900 -172217240 + AT_rich Low_complexity Low_complexity 1 32 0 711 150 142 0 chrX 4756900 4757013 -172217127 - AluSg SINE Alu -180 130 2 366 267 56 11 chrX 4757762 4757852 -172216288 - MER91C DNA MER1_type -46 94 1 1276 183 127 4 chrX 4758105 4758373 -172215767 + AluJb SINE Alu 2 302 0 205 257 29 0 chrX 4758563 4758633 -172215507 + (CGCTG)n Simple_repeat Simple_repeat 5 76 0 695 232 54 6 chrX 4759009 4759177 -172214963 - MER5B DNA MER1_type -2 176 1 200 205 0 0 chrX 4759237 4759276 -172214864 + (ATG)n Simple_repeat Simple_repeat 3 41 0 841 188 0 8 chrX 4760705 4760838 -172213302 + FLAM_A SINE Alu 1 132 -1 566 256 106 19 chrX 4760883 4761124 -172213016 + MLT1J1 LTR MaLR 68 340 -106 362 65 0 0 chrX 4761730 4761776 -172212364 + MADE1 DNA Mariner 1 46 -34 256 207 184 23 chrX 4761780 4761867 -172212273 + MIR3 SINE MIR 103 203 -5 1268 187 47 0 chrX 4761943 4762157 -172211983 - MER58A DNA MER1_type 0 224 1 188 200 100 67 chrX 4762335 4762395 -172211745 + MER5A DNA MER1_type 121 182 -7 1816 220 73 109 chrX 4762510 4763168 -172210972 - HAL1 LINE L1 -743 1764 1089 308 153 17 17 chrX 4763168 4763227 -172210913 + MER116 DNA Mariner 9 67 -13 1816 220 73 109 chrX 4763227 4763452 -172210688 - HAL1 LINE L1 -1418 1089 857 325 266 169 16 chrX 4763469 4763593 -172210547 - MIR SINE MIR -2 260 118 494 164 118 9 chrX 4763593 4763703 -172210437 - HAL1 LINE L1 -1643 864 743 1337 186 9 32 chrX 4763712 4764009 -172210131 + MLT1D LTR MaLR 1 332 -173 7351 168 40 1 chrX 4764009 4765940 -172208200 - L1P2 LINE L1 -445 5709 3699 1831 154 7 20 chrX 4765943 4766248 -172207892 - AluJo SINE Alu -11 301 1 711 180 39 0 chrX 4766248 4766376 -172207764 + MLT1D LTR MaLR 373 505 0 1420 189 25 14 chrX 4766519 4766662 -172207478 + MSTD LTR MaLR 1 141 -255 2141 103 0 0 chrX 4766662 4766944 -172207196 + AluSx SINE Alu 1 282 -30 1420 189 25 14 chrX 4766944 4767086 -172207054 + MSTD LTR MaLR 141 289 -107 2022 166 5 87 chrX 4767131 4767547 -172206593 - MLT1B LTR MaLR 0 390 9 798 285 48 22 chrX 4767557 4767869 -172206271 - HAL1 LINE L1 -2187 320 1 2296 114 0 7 chrX 4768204 4768511 -172205629 - AluSx SINE Alu -7 305 1 1590 143 28 16 chrX 4768822 4769073 -172205067 - AluJo SINE Alu -14 298 45 1062 181 68 0 chrX 4769093 4769270 -172204870 + MER5A DNA MER1_type 1 189 0 262 274 48 0 chrX 4769292 4769354 -172204786 + L2 LINE L2 3234 3298 -15 729 259 151 49 chrX 4770298 4770807 -172203333 + MLT1F1 LTR MaLR 1 561 -6 243 0 0 0 chrX 4770873 4770900 -172203240 + (A)n Simple_repeat Simple_repeat 1 27 0 607 260 165 44 chrX 4771105 4771493 -172202647 + MLT1L LTR MaLR 2 436 -179 331 247 32 43 chrX 4771790 4771883 -172202257 + LTR16A1 LTR ERVL 188 279 -178 218 286 16 16 chrX 4771883 4771946 -172202194 - MIR SINE MIR -171 91 29 761 273 4 24 chrX 4772274 4772501 -172201639 + MIR SINE MIR 25 246 -16 360 337 23 55 chrX 4772519 4772952 -172201188 - HAL1 LINE L1 -877 1630 1212 2632 137 145 100 chrX 4773012 4773397 -172200743 - L1MB2 LINE L1 -107 6064 5637 2268 113 0 0 chrX 4773397 4773698 -172200442 - AluSq SINE Alu -12 301 1 2632 137 145 100 chrX 4773698 4773961 -172200179 - L1MB2 LINE L1 -534 5637 5387 2410 90 0 0 chrX 4774139 4774440 -172199700 + AluSg SINE Alu 1 301 -9 2373 76 0 3 chrX 4774950 4775241 -172198899 + AluSq SINE Alu 1 290 -23 1623 155 51 83 chrX 4775681 4776076 -172198064 + MLT2D LTR ERVL 4 480 -40 286 181 48 0 chrX 4776082 4776165 -172197975 + (TATG)n Simple_repeat Simple_repeat 1 87 0 326 134 0 5 chrX 4776165 4776179 -172197961 + MLT2B1 LTR ERVL 391 404 -116 186 43 0 0 chrX 4776179 4776202 -172197938 + (CA)n Simple_repeat Simple_repeat 2 24 0 326 134 0 5 chrX 4776202 4776243 -172197897 + MLT2B1 LTR ERVL 404 520 0 349 223 106 0 chrX 4776522 4776616 -172197524 - Charlie7 DNA MER1_type -2507 105 2 24 0 0 0 chrX 4776964 4776988 -172197152 + AT_rich Low_complexity Low_complexity 1 24 0 213 289 0 0 chrX 4777331 4777383 -172196757 + MER91B DNA MER1_type 79 130 -60 435 232 11 42 chrX 4777411 4777506 -172196634 + MER91B DNA MER1_type 98 189 -1 215 237 0 34 chrX 4777626 4777685 -172196455 - L2 LINE L2 0 3313 3257 302 271 161 9 chrX 4777929 4778072 -172196068 - MIR SINE MIR -65 143 28 21 0 0 0 chrX 4778561 4778582 -172195558 + AT_rich Low_complexity Low_complexity 1 21 0 605 262 101 28 chrX 4778632 4778918 -172195222 - L1MC4 LINE L1 0 8042 7736 627 302 86 7 chrX 4778941 4779219 -172194921 - MLT1H LTR MaLR 0 549 250 2590 194 18 22 chrX 4779683 4780193 -172193947 - LTR31 LTR ERV1 -8 611 104 1841 163 17 0 chrX 4780233 4780522 -172193618 - AluJo SINE Alu -18 294 1 208 331 110 55 chrX 4780840 4780967 -172193173 + MIR SINE MIR 59 192 -70 474 301 56 20 chrX 4781274 4781470 -172192670 - MIR SINE MIR 0 262 60 320 317 50 25 chrX 4781935 4782055 -172192085 - L2 LINE L2 -1 3271 3149 290 297 42 8 chrX 4782181 4782299 -172191841 - MIR SINE MIR -121 141 20 998 201 11 0 chrX 4782485 4782669 -172191471 + MER5A DNA MER1_type 4 189 0 532 302 39 28 chrX 4782785 4782900 -172191240 + MER5A DNA MER1_type 9 128 -61 5576 45 0 0 chrX 4782900 4783527 -172190613 - L1PA5 LINE L1 -2 6152 5526 532 302 39 28 chrX 4783527 4783590 -172190550 + MER5A DNA MER1_type 128 189 0 2099 130 0 3 chrX 4783664 4783971 -172190169 - AluSx SINE Alu -6 306 1 426 342 86 53 chrX 4784064 4784424 -172189716 - L2 LINE L2 -4 3268 2897 1309 119 5 21 chrX 4784598 4784792 -172189348 - MER4A LTR ERV1 0 664 474 234 184 0 0 chrX 4784855 4784893 -172189247 + L1MC/D LINE L1 5660 5697 -545 2815 145 86 43 chrX 4784905 4785485 -172188655 - L1MB7 LINE L1 0 6184 5580 2840 145 117 26 chrX 4785690 4786235 -172187905 - LTR49 LTR ERV1 0 595 1 976 181 0 125 chrX 4786683 4786808 -172187332 - MER20 DNA MER1_type -2 217 78 2113 102 6 35 chrX 4786808 4787121 -172187019 - AluSq SINE Alu -9 304 1 976 181 0 125 chrX 4787121 4787199 -172186941 - MER20 DNA MER1_type -141 78 48 3595 151 50 18 chrX 4787199 4787587 -172186553 + LTR26E LTR ERV1 1 416 -206 1624 104 0 0 chrX 4787587 4787798 -172186342 - AluSg/x SINE Alu -18 292 82 3595 151 50 18 chrX 4787798 4788012 -172186128 + LTR26E LTR ERV1 416 622 0 976 181 0 125 chrX 4788012 4788055 -172186085 - MER20 DNA MER1_type -171 48 1 419 320 16 0 chrX 4788580 4788702 -172185438 - MIR SINE MIR -137 125 2 447 314 24 39 chrX 4789092 4789323 -172184817 - L1ME3A LINE L1 -1 6161 5940 2395 82 3 7 chrX 4789420 4789724 -172184416 - AluSp SINE Alu -10 303 1 738 242 9 3 chrX 4789900 4790074 -172184066 + MLT1F LTR MaLR 1 183 -378 * 2831 250 55 81 chrX 4790073 4791203 -172182937 + MER69B DNA AcHobo 15 1112 -1414 1998 133 3 0 chrX 4791203 4791520 -172182620 + AluSq SINE Alu 1 318 0 2831 250 55 81 chrX 4791520 4791633 -172182507 + MER69B DNA AcHobo 1112 1226 0 272 287 122 9 chrX 4791917 4792032 -172182108 - L2 LINE L2 -458 2856 2729 848 126 21 28 chrX 4793248 4793391 -172180749 - FLAM_C SINE Alu -1 142 1 243 306 16 16 chrX 4793725 4793846 -172180294 + L1 LINE L1 4938 5058 -1088 2418 82 0 0 chrX 4793875 4794169 -172179971 - AluSc SINE Alu -15 294 1 2217 104 17 0 chrX 4794212 4794509 -172179631 + AluSx SINE Alu 1 302 -10 554 319 86 26 chrX 4794798 4795042 -172179098 + HAL1 LINE L1 1241 1524 -983 2269 90 16 10 chrX 4795042 4795352 -172178788 + AluSx SINE Alu 1 312 0 554 319 86 26 chrX 4795352 4795536 -172178604 + HAL1 LINE L1 1524 1695 -812 310 272 62 68 chrX 4795575 4795737 -172178403 + HAL1 LINE L1 1797 1957 -550 640 242 91 80 chrX 4795754 4796018 -172178122 + MLT1H1 LTR MaLR 1 267 -288 2547 64 0 6 chrX 4796045 4796356 -172177784 - AluSp SINE Alu -4 309 1 1528 40 0 0 chrX 4796500 4796673 -172177467 + AluY SINE Alu 131 303 -8 2189 97 7 7 chrX 4796683 4796982 -172177158 + AluSx SINE Alu 1 299 -13 1201 168 22 0 chrX 4797523 4797708 -172176432 - MER5A DNA MER1_type 0 189 1 236 257 95 63 chrX 4798161 4798414 -172175726 + HAL1 LINE L1 2222 2482 -25 531 283 63 19 chrX 4798485 4798690 -172175450 + MIR SINE MIR 49 262 0 5869 83 39 10 chrX 4798956 4799747 -172174393 - L1MA2 LINE L1 0 6304 5491 2340 198 105 70 chrX 4800452 4801082 -172173058 + MLT1E1 LTR MaLR 3 654 0 977 232 14 5 chrX 4801984 4802191 -172171949 - MER3 DNA MER1_type 0 209 1 5326 174 52 14 chrX 4802205 4803244 -172170896 + Tigger6a DNA MER2_type 6 1083 0 306 279 19 39 chrX 4803324 4803428 -172170712 + L2 LINE L2 3171 3272 0 240 111 0 0 chrX 4804258 4804294 -172169846 + (CA)n Simple_repeat Simple_repeat 1 36 0 205 200 0 0 chrX 4804375 4804415 -172169725 + T-rich Low_complexity Low_complexity 1 40 0 360 155 18 31 chrX 4804424 4804498 -172169642 - AluSg/x SINE Alu -120 180 120 263 254 48 24 chrX 4805124 4805250 -172168890 + L1ME4a LINE L1 5940 6068 -53 624 236 130 20 chrX 4805255 4805547 -172168593 + L1MC5 LINE L1 7631 7954 -7 216 97 0 0 chrX 4805684 4805715 -172168425 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 263 113 97 16 chrX 4805715 4805777 -172168363 - Charlie7 DNA MER1_type -86 2526 2460 629 279 43 31 chrX 4806192 4806450 -172167690 - MIR SINE MIR 0 262 2 306 324 19 0 chrX 4806461 4806566 -172167574 + MIR SINE MIR 151 257 -5 31 76 0 0 chrX 4806644 4806710 -172167430 + AT_rich Low_complexity Low_complexity 1 66 0 1875 147 3 21 chrX 4810089 4810374 -172163766 - AluSx SINE Alu -32 280 1 1882 168 0 22 chrX 4810984 4811299 -172162841 - AluJo SINE Alu -3 309 2 1736 153 22 32 chrX 4812018 4812331 -172161809 - AluJo SINE Alu -2 310 1 330 257 86 9 chrX 4812770 4812875 -172161265 + MIR SINE MIR 88 200 -62 2002 118 0 0 chrX 4812924 4813195 -172160945 + AluSx SINE Alu 1 271 -41 1686 167 3 40 chrX 4813619 4813942 -172160198 - AluJb SINE Alu -1 311 1 180 0 0 0 chrX 4814050 4814070 -172160070 + (TAA)n Simple_repeat Simple_repeat 1 20 0 517 335 57 1 chrX 4814079 4814299 -172159841 - MIR SINE MIR -17 245 15 198 302 79 0 chrX 4814332 4814395 -172159745 - MIR3 SINE MIR -14 194 127 3018 125 7 2 chrX 4814497 4814928 -172159212 - MER57B LTR ERV1 0 434 2 201 277 44 66 chrX 4815770 4815907 -172158233 - L2 LINE L2 -10 3303 3170 2461 83 0 0 chrX 4816091 4816393 -172157747 - AluSg SINE Alu -8 302 1 25 0 0 0 chrX 4816438 4816463 -172157677 + AT_rich Low_complexity Low_complexity 1 25 0 773 279 28 5 chrX 4816761 4816976 -172157164 - MIR SINE MIR -3 259 40 1611 208 13 92 chrX 4818312 4818379 -172155761 - MLT1D LTR MaLR 0 505 434 1423 120 10 0 chrX 4818379 4818587 -172155553 - L1PA15 LINE L1 -6 6159 5950 2300 105 3 0 chrX 4818595 4818899 -172155241 - AluSp SINE Alu -8 305 1 1611 208 13 92 chrX 4818899 4819298 -172154842 - MLT1D LTR MaLR -78 427 68 270 325 78 36 chrX 4819479 4819645 -172154495 - MIR SINE MIR 0 262 90 192 77 0 0 chrX 4819645 4819671 -172154469 + (TTA)n Simple_repeat Simple_repeat 2 27 0 890 146 0 0 chrX 4819671 4819794 -172154346 - FLAM_C SINE Alu -20 123 1 204 274 69 39 chrX 4821018 4821120 -172153020 + L2 LINE L2 3162 3266 -6 1308 202 27 0 chrX 4821166 4821424 -172152716 + L1MD3 LINE L1 7729 7993 -2 2383 70 3 3 chrX 4821642 4821943 -172152197 + AluY SINE Alu 1 301 -10 441 268 225 0 chrX 4823728 4823870 -172150270 + MER5A DNA MER1_type 9 182 -7 353 246 49 28 chrX 4824151 4824293 -172149847 + MIR3 SINE MIR 15 159 -49 228 250 114 71 chrX 4824321 4824461 -172149679 + L2 LINE L2 3066 3211 -102 432 83 24 36 chrX 4825494 4825578 -172148562 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 341 85 0 0 chrX 4825978 4826025 -172148115 + MADE1 DNA Mariner 34 80 0 311 212 76 0 chrX 4826029 4826095 -172148045 - MIR SINE MIR -64 144 74 2538 75 0 0 chrX 4827044 4827349 -172146791 + AluSg SINE Alu 1 305 -5 2408 87 0 3 chrX 4827366 4827665 -172146475 + AluSg SINE Alu 1 298 -12 2188 130 0 0 chrX 4827991 4828292 -172145848 + AluSx SINE Alu 1 301 -11 22 35 0 0 chrX 4828720 4828749 -172145391 + AT_rich Low_complexity Low_complexity 1 29 0 3868 96 46 4 chrX 4829070 4829632 -172144508 - Tigger3(Golem) DNA MER2_type -1 3028 2443 277 248 167 0 chrX 4830379 4830501 -172143639 - MIR SINE MIR -62 146 16 236 54 54 0 chrX 4830609 4830646 -172143494 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 471 301 91 32 chrX 4830716 4831121 -172143019 - L1ME4a LINE L1 -3 6118 5690 1817 122 20 0 chrX 4832007 4832293 -172141847 - AluJo SINE Alu 0 316 26 2501 37 41 0 chrX 4832335 4832630 -172141510 - AluY SINE Alu -3 308 2 1910 120 174 23 chrX 4833114 4833465 -172140675 - MER4A LTR ERV1 0 664 261 608 124 21 10 chrX 4833465 4833562 -172140578 - MER4A LTR ERV1 -566 98 1 210 351 0 43 chrX 4834134 4834228 -172139912 - MER5A DNA MER1_type -22 167 78 765 179 19 26 chrX 4834282 4834438 -172139702 + MER5A DNA MER1_type 31 185 -4 801 201 29 6 chrX 4834465 4834639 -172139501 + MER5B DNA MER1_type 1 178 0 1233 184 121 18 chrX 4834677 4834949 -172139191 + AluJo SINE Alu 1 300 -12 506 210 0 0 chrX 4835071 4835171 -172138969 - MER5A DNA MER1_type -81 108 9 285 317 33 39 chrX 4835222 4835402 -172138738 + L2 LINE L2 2235 2413 -901 368 274 9 9 chrX 4835570 4835683 -172138457 + L2 LINE L2 3199 3311 -2 408 40 0 0 chrX 4835692 4835742 -172138398 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 2037 123 38 3 chrX 4835870 4836162 -172137978 - AluSx SINE Alu -10 302 1 194 188 0 0 chrX 4836184 4836216 -172137924 + L2 LINE L2 3201 3232 -81 180 0 0 0 chrX 4836911 4836931 -172137209 + (CA)n Simple_repeat Simple_repeat 1 20 0 207 307 0 27 chrX 4836933 4837008 -172137132 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 366 107 0 0 chrX 4837010 4837066 -172137074 + (TA)n Simple_repeat Simple_repeat 2 57 0 2367 100 3 0 chrX 4837965 4838266 -172135874 + AluSx SINE Alu 1 302 -10 28 86 0 0 chrX 4838295 4838365 -172135775 + AT_rich Low_complexity Low_complexity 1 70 0 230 220 0 34 chrX 4838491 4838550 -172135590 + L1MC4 LINE L1 6647 6703 -1339 200 200 27 136 chrX 4839813 4839923 -172134217 + MIR SINE MIR 91 188 -74 1742 97 4 0 chrX 4841564 4841792 -172132348 - AluSg/x SINE Alu -1 309 81 2409 84 7 0 chrX 4844167 4844475 -172129665 - AluSg SINE Alu 0 310 1 292 244 52 0 chrX 4848545 4848630 -172125510 - MIR SINE MIR -51 157 68 444 254 59 0 chrX 4848841 4848959 -172125181 + MER94 DNA DNA 2 126 -8 1809 151 10 10 chrX 4849315 4849613 -172124527 + AluJo SINE Alu 3 300 -12 460 153 0 0 chrX 4849982 4850054 -172124086 - AluJ/FLAM SINE Alu -236 76 5 524 134 116 71 chrX 4850907 4851019 -172123121 + MER63 DNA MER1_type 1 743 -93 599 325 74 9 chrX 4851167 4851656 -172122484 + L2 LINE L2 2544 3068 -245 378 247 22 0 chrX 4851690 4851779 -172122361 - MIR SINE MIR 0 262 172 1001 199 44 22 chrX 4851788 4852014 -172122126 - MER46C DNA MER2_type 0 338 108 49 107 0 0 chrX 4852014 4852210 -172121930 + AT_rich Low_complexity Low_complexity 1 196 0 227 193 101 118 chrX 4852210 4852329 -172121811 - MER46C DNA MER2_type -203 135 19 2220 109 0 0 chrX 4852330 4852657 -172121483 - AluSq SINE Alu 0 327 1 357 61 0 0 chrX 4852664 4852713 -172121427 - MIR SINE MIR -107 155 107 319 256 136 42 chrX 4852733 4852924 -172121216 + L2 LINE L2 3105 3313 0 212 229 0 33 chrX 4853457 4853518 -172120622 - L2 LINE L2 -77 3195 3137 1019 256 40 49 chrX 4853710 4854057 -172120083 + MLT1J LTR MaLR 6 349 -162 821 196 101 6 chrX 4854931 4855099 -172119041 - MER3 DNA MER1_type -25 184 1 502 176 133 66 chrX 4855113 4855323 -172118817 - MER58 DNA MER1_type -5 2415 1 343 202 0 140 chrX 4856212 4856326 -172117814 - MER58 DNA MER1_type -243 98 1 217 212 136 68 chrX 4856982 4857114 -172117026 - MIR SINE MIR -14 248 108 2199 120 3 0 chrX 4857345 4857646 -172116494 + AluSx SINE Alu 1 302 -10 2883 85 0 3 chrX 4857741 4858106 -172116034 - THE1B LTR MaLR 0 364 1 352 237 52 21 chrX 4858194 4858291 -172115849 - L2 LINE L2 -3 3269 3170 200 337 11 11 chrX 4858953 4859042 -172115098 + MIR3 SINE MIR 114 202 -6 2133 109 0 0 chrX 4859261 4859566 -172114574 - AluSx SINE Alu 0 305 1 1213 301 53 15 chrX 4860110 4860864 -172113276 - L2 LINE L2 -8 3305 2525 208 221 128 12 chrX 4860897 4860983 -172113157 - L2 LINE L2 -1482 1832 1737 246 156 0 0 chrX 4861028 4861073 -172113067 + CT-rich Low_complexity Low_complexity 1 45 0 727 218 184 49 chrX 4861076 4861424 -172112716 + MLT1G LTR MaLR 196 590 0 1063 203 98 67 chrX 4862692 4863008 -172111132 - MER58B DNA MER1_type -13 328 3 241 313 20 0 chrX 4863358 4863457 -172110683 + MIR SINE MIR 49 149 -113 557 243 43 102 chrX 4863599 4863845 -172110295 - L1ME4a LINE L1 -225 5896 5670 3040 67 15 0 chrX 4863845 4864247 -172109893 - L1PA10 LINE L1 -1 6167 5760 557 243 43 102 chrX 4864247 4864305 -172109835 - L1ME4a LINE L1 -451 5670 5610 221 350 0 44 chrX 4864985 4865122 -172109018 - MIR SINE MIR -71 191 61 1904 153 80 49 chrX 4865125 4865577 -172108563 + MER31B LTR ERV1 1 466 0 24 32 0 0 chrX 4866344 4866375 -172107765 + AT_rich Low_complexity Low_complexity 1 31 0 1111 178 84 0 chrX 4866757 4866959 -172107181 - MER20 DNA MER1_type 0 219 1 444 306 33 0 chrX 4867337 4867520 -172106620 - MIR SINE MIR 0 262 74 818 241 105 8 chrX 4867767 4868198 -172105942 + LTR33 LTR ERVL 14 512 -9 404 289 19 13 chrX 4868208 4868364 -172105776 + L1M4 LINE L1 4490 4646 -1500 434 188 20 30 chrX 4868417 4868518 -172105622 + MER20B DNA MER1_type 682 781 -2 2200 116 0 3 chrX 4868767 4869070 -172105070 - AluSg SINE Alu -8 302 1 41321 73 3 2 chrX 4869161 4875297 -172098843 + L1PA7 LINE L1 3 6139 -15 1978 137 10 10 chrX 4875430 4875729 -172098411 + AluSq SINE Alu 1 299 -14 830 96 7 66 chrX 4925993 4926129 -172048011 + FLAM_C SINE Alu 2 129 -4 419 250 230 7 chrX 4926998 4927146 -172046994 + MER5A DNA MER1_type 9 189 0 343 209 18 0 chrX 4927672 4927782 -172046358 + (TCCA)n Simple_repeat Simple_repeat 2 113 0 192 363 73 51 chrX 4927876 4928231 -172045909 + L2 LINE L2 2427 2789 -525 843 157 5 65 chrX 4928380 4928565 -172045575 - Tigger2a DNA MER2_type -260 174 1 974 202 67 14 chrX 4928578 4928786 -172045354 + MER58A DNA MER1_type 3 221 -3 319 209 22 11 chrX 4928790 4928881 -172045259 - HAL1 LINE L1 -171 2336 2245 3363 140 132 6 chrX 4928913 4929541 -172044599 + MER39 LTR ERV1 1 707 0 21 36 0 0 chrX 4930115 4930143 -172043997 + AT_rich Low_complexity Low_complexity 1 28 0 45 34 0 0 chrX 4930850 4930909 -172043231 + AT_rich Low_complexity Low_complexity 1 59 0 2243 121 0 0 chrX 4930937 4931243 -172042897 - AluSx SINE Alu -6 306 1 591 299 105 41 chrX 4931715 4931781 -172042359 + L1ME LINE L1 4862 4922 -1242 2339 67 0 0 chrX 4931781 4932093 -172042047 + AluY SINE Alu 1 312 0 591 299 105 41 chrX 4932093 4932597 -172041543 + L1ME LINE L1 4922 5465 -699 484 261 67 28 chrX 4932766 4933049 -172041091 + HAL1 LINE L1 1032 1325 -1182 195 320 154 0 chrX 4933520 4933598 -172040542 + L2 LINE L2 3147 3236 -36 2016 117 3 10 chrX 4935820 4936111 -172038029 + AluSx SINE Alu 14 302 -10 3043 150 54 9 chrX 4936213 4936422 -172037718 + L1MB5 LINE L1 5577 5775 -399 270 0 0 0 chrX 4936422 4936452 -172037688 + (CA)n Simple_repeat Simple_repeat 2 31 0 3043 150 54 9 chrX 4936452 4936814 -172037326 + L1MB5 LINE L1 5775 6174 0 2367 90 0 0 chrX 4936823 4937122 -172037018 + AluSg SINE Alu 1 299 -11 620 167 121 23 chrX 4938227 4938401 -172035739 - MER33 DNA MER1_type -132 192 2 2291 92 3 0 chrX 4938579 4938871 -172035269 + AluSg SINE Alu 1 293 -17 1605 124 18 0 chrX 4938881 4939107 -172035033 + AluSq SINE Alu 1 230 -83 28 0 0 0 chrX 4939246 4939274 -172034866 + AT_rich Low_complexity Low_complexity 1 28 0 465 228 101 36 chrX 4939536 4939755 -172034385 - L1MC4 LINE L1 -634 7408 7176 943 181 0 0 chrX 4941745 4941889 -172032251 - FAM SINE Alu -22 163 20 222 359 70 0 chrX 4942618 4942746 -172031394 + MIR SINE MIR 58 194 -68 3060 111 99 32 chrX 4943097 4943557 -172030583 + LTR49 LTR ERV1 2 507 -88 1404 161 165 0 chrX 4943557 4943812 -172030328 + AluJb SINE Alu 1 297 -5 3060 111 99 32 chrX 4943812 4943908 -172030232 + LTR49 LTR ERV1 507 595 0 2480 199 102 7 chrX 4943964 4944561 -172029579 - MLT1E1 LTR MaLR 0 654 1 1004 171 40 11 chrX 4944588 4944763 -172029377 + FAM SINE Alu 1 44 -5 206 238 0 0 chrX 4945791 4945833 -172028307 + A-rich Low_complexity Low_complexity 4 45 0 479 253 79 75 chrX 4945957 4945999 -172028141 + MER112 DNA MER1_type 7 47 -213 1853 165 0 10 chrX 4945999 4946296 -172027844 + AluJb SINE Alu 1 294 -18 479 253 79 75 chrX 4946296 4946506 -172027634 + MER112 DNA MER1_type 47 260 0 297 0 0 0 chrX 4949540 4949573 -172024567 + (TA)n Simple_repeat Simple_repeat 1 33 0 314 258 32 16 chrX 4949651 4949775 -172024365 + L1MC4a LINE L1 5788 5913 -1895 358 128 0 26 chrX 4949775 4949853 -172024287 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1882 135 0 11 chrX 4949853 4950134 -172024006 - AluJb SINE Alu -34 278 1 916 216 59 24 chrX 4950671 4950926 -172023214 + L1MC4a LINE L1 6555 6818 -990 2485 213 89 33 chrX 4950943 4951846 -172022294 + L1MC5 LINE L1 6961 7913 -48 381 272 14 14 chrX 4952027 4952174 -172021966 + (TA)n Simple_repeat Simple_repeat 1 147 0 211 214 71 0 chrX 4952679 4952721 -172021419 + MIR SINE MIR 79 123 -139 502 258 52 31 chrX 4953617 4953811 -172020329 - MER58 DNA MER1_type -130 211 14 559 228 24 0 chrX 4953815 4953938 -172020202 + MIR SINE MIR 21 146 -116 22 35 0 0 chrX 4953997 4954026 -172020114 + AT_rich Low_complexity Low_complexity 1 29 0 910 150 56 19 chrX 4954112 4954272 -172019868 - FRAM SINE Alu 0 166 1 2095 127 10 3 chrX 4955000 4955300 -172018840 + AluSx SINE Alu 1 302 -10 1364 109 95 5 chrX 4956111 4956321 -172017819 + MER30 DNA MER1_type 1 229 -1 3978 28 4 0 chrX 4957235 4957707 -172016433 - L1PA5 LINE L1 -6 6148 5675 1420 236 74 7 chrX 4957856 4958342 -172015798 - L2 LINE L2 -3 3310 2789 350 205 128 0 chrX 4958516 4958633 -172015507 - L1ME LINE L1 -5182 888 757 2096 243 53 21 chrX 4958647 4958939 -172015201 - L1ME LINE L1 -5371 699 418 3820 152 52 12 chrX 4958939 4959617 -172014523 + MER44D DNA MER2_type 1 705 0 2096 243 53 21 chrX 4959617 4959998 -172014142 - L1ME LINE L1 -5652 418 4 277 234 11 53 chrX 4961100 4961148 -172012992 + (CATATA)n Simple_repeat Simple_repeat 6 50 -45 441 251 75 48 chrX 4961148 4961375 -172012765 + MER106A DNA MER1_type 1 233 -3 277 234 11 53 chrX 4961375 4961420 -172012720 + (CATATA)n Simple_repeat Simple_repeat 50 95 0 865 223 132 70 chrX 4962092 4962639 -172011501 + MER34C LTR ERV1 4 584 -1 552 202 16 16 chrX 4962639 4962760 -172011380 + MER20 DNA MER1_type 99 219 0 25 31 0 0 chrX 4962761 4962793 -172011347 + AT_rich Low_complexity Low_complexity 1 32 0 1678 205 38 48 chrX 4964220 4964254 -172009886 - Charlie4a DNA MER1_type -1453 508 475 1820 110 64 135 chrX 4964254 4964646 -172009494 - THE1B LTR MaLR 0 364 1 12118 81 4 1 chrX 4964646 4966221 -172007919 - THE1B-int LTR MaLR 0 1580 1 2101 137 80 0 chrX 4966221 4966558 -172007582 - THE1B LTR MaLR 0 364 1 1678 205 38 48 chrX 4966558 4966705 -172007435 - Charlie4a DNA MER1_type -1484 477 330 1010 233 9 5 chrX 4966705 4966920 -172007220 - MER20 DNA MER1_type -3 216 1 1678 205 38 48 chrX 4966920 4967232 -172006908 - Charlie4a DNA MER1_type -1631 330 17 383 336 8 8 chrX 4967327 4967452 -172006688 - MIR3 SINE MIR -31 177 53 1252 183 24 45 chrX 4968264 4968553 -172005587 + MLT1A1 LTR MaLR 3 285 -80 1757 244 96 43 chrX 4968834 4969388 -172004752 + MLT1E LTR MaLR 7 589 -4 2322 100 3 6 chrX 4969732 4970043 -172004097 + AluSg SINE Alu 1 310 0 234 260 0 0 chrX 4970195 4970245 -172003895 + L2 LINE L2 3264 3313 0 516 225 9 18 chrX 4971181 4971292 -172002848 + MER5B DNA MER1_type 34 143 -35 317 220 49 4 chrX 4971313 4971443 -172002697 - MER5A DNA MER1_type 0 189 11 399 276 15 52 chrX 4971506 4971640 -172002500 - MER90 LTR ERV1 0 614 486 679 134 0 18 chrX 4971642 4971754 -172002386 + 7SK RNA RNA 1 110 -83 1224 166 5 10 chrX 4971759 4971830 -172002310 - AluJo SINE Alu -108 204 134 2381 60 0 0 chrX 4971830 4972143 -172001997 - AluY SINE Alu 0 313 1 1224 166 5 10 chrX 4972143 4972275 -172001865 - AluJo SINE Alu -178 134 1 204 308 0 0 chrX 4972312 4972364 -172001776 - MIR SINE MIR -6 256 205 281 245 41 10 chrX 4973729 4973827 -172000313 + (TATATG)n Simple_repeat Simple_repeat 5 105 0 578 282 99 63 chrX 4974268 4974520 -171999620 - MIR SINE MIR 0 262 2 24 0 0 0 chrX 4974634 4974658 -171999482 + AT_rich Low_complexity Low_complexity 1 24 0 2128 121 3 3 chrX 4975076 4975373 -171998767 - AluSx SINE Alu -15 297 1 1044 269 35 57 chrX 4976468 4976707 -171997433 + L2 LINE L2 2921 3149 -164 2832 131 14 36 chrX 4976707 4977149 -171996991 + Tigger2a DNA MER2_type 1 432 -2 1044 269 35 57 chrX 4977149 4977311 -171996829 + L2 LINE L2 3149 3313 0 180 317 58 39 chrX 4977707 4977811 -171996329 - MIR SINE MIR -66 142 37 239 285 126 53 chrX 4978260 4978411 -171995729 - MIR SINE MIR -18 244 83 464 190 93 0 chrX 4978467 4978576 -171995564 - MER45A DNA AcHobo -2 176 58 282 206 0 0 chrX 4979223 4979286 -171994854 + GA-rich Low_complexity Low_complexity 2 64 0 888 207 23 6 chrX 4979505 4979679 -171994461 + MER5B DNA MER1_type 1 177 -1 266 313 0 50 chrX 4979894 4979993 -171994147 - MIR SINE MIR -2 260 167 449 278 233 29 chrX 4980269 4980643 -171993497 - L2 LINE L2 -339 2975 2526 1886 211 68 35 chrX 4980873 4981571 -171992569 + Charlie7 DNA MER1_type 1852 2597 -15 443 274 11 54 chrX 4982767 4982953 -171991187 + LTR33 LTR ERVL 37 214 -307 302 299 19 0 chrX 4982936 4983043 -171991097 + LTR33 LTR ERVL 327 435 -86 * 864 278 27 5 chrX 4983994 4984217 -171989923 + MIR SINE MIR 29 256 -6 2103 60 0 0 chrX 4984220 4984471 -171989669 + L1PA13 LINE L1 5911 6161 -2 346 318 84 38 chrX 4988126 4988365 -171985775 + L1ME LINE L1 4562 4811 -1335 229 264 28 0 chrX 4988463 4988535 -171985605 + Charlie7 DNA MER1_type 1519 1592 -1020 225 194 0 0 chrX 4989486 4989522 -171984618 + L1ME LINE L1 5552 5587 -577 1801 208 25 11 chrX 4990057 4990423 -171983717 + MLT1A2 LTR MaLR 1 371 -3 284 265 143 10 chrX 4991171 4991269 -171982871 - L2 LINE L2 -12 3260 3150 2261 188 81 43 chrX 4992267 4992750 -171981390 - MLT1D LTR MaLR 0 505 5 1930 151 3 35 chrX 4993478 4993796 -171980344 + AluJb SINE Alu 1 308 -4 2048 169 77 12 chrX 4993896 4993986 -171980154 - Charlie1b DNA MER1_type -2320 441 358 2194 122 10 0 chrX 4993986 4994290 -171979850 + AluSx SINE Alu 1 307 -5 2048 169 77 12 chrX 4994290 4994613 -171979527 - Charlie1b DNA MER1_type -2403 358 1 1331 220 11 8 chrX 4995344 4995608 -171978532 + Tigger7 DNA MER2_type 3 267 -466 554 150 20 30 chrX 4995606 4995706 -171978434 + Tigger7 DNA MER2_type 2389 2487 0 * 1867 143 29 0 chrX 4995760 4996068 -171978072 + AluSg SINE Alu 1 316 0 204 233 12 58 chrX 4996856 4996942 -171977198 - MIR SINE MIR -92 170 89 3187 169 19 12 chrX 4999531 5000117 -171974023 - L1MD3 LINE L1 -2 7993 7404 319 253 35 11 chrX 5000117 5000204 -171973936 - MLT1F1 LTR MaLR -442 125 37 677 109 44 36 chrX 5000205 5000342 -171973798 - L1MC3 LINE L1 -687 7098 6961 1171 83 0 6 chrX 5000348 5000505 -171973635 - AluSg/x SINE Alu -20 290 135 1011 179 97 0 chrX 5000513 5000588 -171973552 - L1MD3 LINE L1 -1022 6973 6907 198 0 0 0 chrX 5000588 5000610 -171973530 + (TC)n Simple_repeat Simple_repeat 1 22 0 1011 179 97 0 chrX 5000610 5000729 -171973411 - L1MD3 LINE L1 -1088 6907 6760 1878 188 19 40 chrX 5001159 5001531 -171972609 + MLT1A1 LTR MaLR 2 365 0 479 177 133 26 chrX 5002129 5002162 -171971978 + LTR40b LTR ERVL 331 359 -103 321 26 0 0 chrX 5002162 5002200 -171971940 + (TG)n Simple_repeat Simple_repeat 2 39 0 479 177 133 26 chrX 5002200 5002279 -171971861 + LTR40b LTR ERVL 359 455 -7 41762 57 15 2 chrX 5002424 5006157 -171967983 - L1P2 LINE L1 -584 5571 1741 2499 64 0 0 chrX 5006157 5006452 -171967688 + AluSp SINE Alu 1 295 -18 41762 57 15 2 chrX 5006452 5008206 -171965934 - L1P2 LINE L1 -4414 1741 11 1715 146 8 0 chrX 5008379 5008647 -171965493 + AluJb SINE Alu 40 309 -3 21 0 0 0 chrX 5008994 5009015 -171965125 + AT_rich Low_complexity Low_complexity 1 21 0 329 299 74 7 chrX 5009256 5009399 -171964741 - MIR SINE MIR -62 146 35 226 294 20 10 chrX 5009425 5009527 -171964613 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 304 252 30 96 chrX 5009773 5009908 -171964232 + MIR3 SINE MIR 35 160 -48 2263 97 3 13 chrX 5009919 5010228 -171963912 + AluSp SINE Alu 1 306 -7 252 0 0 0 chrX 5010362 5010390 -171963750 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 513 233 16 31 chrX 5010815 5010944 -171963196 - MIR SINE MIR -82 180 54 906 257 114 32 chrX 5010975 5011343 -171962797 + MLT1H LTR MaLR 22 393 -57 1506 190 7 20 chrX 5011343 5011643 -171962497 + L1MB4 LINE L1 5885 6180 0 906 257 114 32 chrX 5011643 5011707 -171962433 + MLT1H LTR MaLR 393 450 0 23 33 0 0 chrX 5012296 5012326 -171961814 + AT_rich Low_complexity Low_complexity 1 30 0 207 69 0 0 chrX 5012483 5012512 -171961628 + (TAA)n Simple_repeat Simple_repeat 2 30 0 457 276 8 8 chrX 5013517 5013640 -171960500 - L2 LINE L2 -4 3309 3187 279 308 44 25 chrX 5014233 5014392 -171959748 - MIR SINE MIR -4 258 97 371 242 60 54 chrX 5015046 5015195 -171958945 - MIR SINE MIR -85 177 28 379 293 32 8 chrX 5015315 5015438 -171958702 - MIR SINE MIR -45 217 92 229 388 97 22 chrX 5015840 5016296 -171957844 - L2 LINE L2 -2440 874 385 1574 270 24 0 chrX 5016436 5016817 -171957323 + LTR16C LTR ERVL 100 489 -2 2461 91 3 0 chrX 5018337 5018644 -171955496 + AluSp SINE Alu 1 308 -5 1367 167 0 9 chrX 5019705 5019926 -171954214 + AluJo SINE Alu 85 303 -9 773 306 65 45 chrX 5020248 5020571 -171953569 + L2 LINE L2 2380 2714 -600 1851 122 61 7 chrX 5020571 5020850 -171953290 + AluSx SINE Alu 2 295 -17 773 306 65 45 chrX 5020850 5020925 -171953215 + L2 LINE L2 2714 2786 -528 993 226 72 0 chrX 5020939 5021061 -171953079 - MER58A DNA MER1_type -2196 224 79 1698 206 0 3 chrX 5021061 5021371 -171952769 - AluJb SINE Alu -1 311 3 993 226 72 0 chrX 5021371 5021456 -171952684 - MER58A DNA MER1_type -2341 79 2 520 313 25 95 chrX 5021584 5021910 -171952230 + L2 LINE L2 2966 3268 -4 334 301 88 9 chrX 5021922 5022035 -171952105 + MIR SINE MIR 108 229 -33 543 296 62 16 chrX 5022639 5022896 -171951244 + LTR16C LTR ERVL 223 491 0 803 168 0 8 chrX 5022973 5023092 -171951048 - FLAM_A SINE Alu -15 118 1 24 0 0 0 chrX 5023583 5023607 -171950533 + AT_rich Low_complexity Low_complexity 1 24 0 2277 105 7 0 chrX 5023670 5023976 -171950164 - AluSx SINE Alu -4 308 1 312 260 14 0 chrX 5024122 5024195 -171949945 + MIR SINE MIR 48 121 -141 1590 161 95 3 chrX 5025457 5025742 -171948398 + AluJo SINE Alu 1 311 -1 311 289 22 0 chrX 5025817 5025907 -171948233 + L1MC5 LINE L1 5845 5936 -1872 1609 152 7 45 chrX 5026289 5026558 -171947582 - AluJo SINE Alu -53 259 1 2362 222 97 60 chrX 5026561 5027713 -171946427 + L1MC5 LINE L1 6294 7513 -448 194 301 54 21 chrX 5028080 5028173 -171945967 + MIR SINE MIR 8 103 -159 296 258 62 10 chrX 5028873 5028970 -171945170 + MER20B DNA MER1_type 76 177 -606 702 166 66 91 chrX 5029768 5030009 -171944131 + L1MC5 LINE L1 7653 7887 -74 1205 316 33 24 chrX 5030085 5030664 -171943476 + MLT1K LTR MaLR 2 585 -3 2532 81 0 0 chrX 5030723 5031032 -171943108 + AluSx SINE Alu 1 309 -3 1244 88 0 33 chrX 5031956 5032138 -171942002 + L1PA7 LINE L1 5965 6140 -14 562 306 117 37 chrX 5032315 5032724 -171941416 + MLT1J2 LTR MaLR 1 442 -8 1049 202 17 56 chrX 5033108 5033341 -171940799 + MER58A DNA MER1_type 1 224 0 327 294 39 0 chrX 5033750 5033895 -171940245 - MIR SINE MIR -50 212 62 578 312 60 14 chrX 5033914 5034132 -171940008 - MIR SINE MIR 0 262 35 2179 144 42 31 chrX 5034376 5034736 -171939404 + THE1B LTR MaLR 1 364 0 2292 96 14 0 chrX 5036260 5036553 -171937587 - AluSx SINE Alu -15 297 1 843 264 0 46 chrX 5037034 5037207 -171936933 - L1M3a LINE L1 -4737 2828 2671 2051 125 14 10 chrX 5037207 5037503 -171936637 - AluJo SINE Alu -15 297 1 843 264 0 46 chrX 5037503 5037613 -171936527 - L1M3a LINE L1 -4894 2671 2558 * 6030 151 13 10 chrX 5037608 5038705 -171935435 - L1MA4 LINE L1 -4 6296 5197 1211 162 8 32 chrX 5038813 5039066 -171935074 - L1 LINE L1 -773 5577 5331 381 176 0 47 chrX 5039048 5039133 -171935007 - L1M1 LINE L1 -4564 1749 1669 * 2728 214 48 94 chrX 5039175 5039809 -171934331 - L1M1 LINE L1 -4026 2356 1695 797 192 0 0 chrX 5039809 5039934 -171934206 - FLAM_A SINE Alu -8 125 1 2728 214 48 94 chrX 5039934 5040562 -171933578 - L1M1 LINE L1 -4687 1695 1040 1048 106 12 6 chrX 5040562 5040732 -171933408 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 2728 214 48 94 chrX 5040732 5040806 -171933334 - L1M1 LINE L1 -5342 1040 964 1731 182 30 3 chrX 5040806 5041108 -171933032 - AluJb SINE Alu -2 310 1 2728 214 48 94 chrX 5041108 5041388 -171932752 - L1M1 LINE L1 -5418 964 1152 1921 156 0 28 chrX 5041388 5041709 -171932431 - AluSx SINE Alu 0 312 1 2728 214 48 94 chrX 5041709 5041829 -171932311 - L1M1 LINE L1 -5229 1153 1029 1043 300 117 18 chrX 5041873 5042608 -171931532 - L1M1 LINE L1 -5141 1162 530 2154 261 104 15 chrX 5042611 5043293 -171930847 - L1M3a LINE L1 -5212 2274 1532 199 330 130 20 chrX 5044251 5044351 -171929789 + L2 LINE L2 3162 3272 0 1120 213 88 37 chrX 5045221 5045494 -171928646 - MER58B DNA MER1_type -53 288 2 2007 175 39 11 chrX 5046189 5046544 -171927596 - MLT1A1 LTR MaLR 0 365 1 2093 174 69 16 chrX 5048365 5048797 -171925343 + L1M4 LINE L1 5255 5709 -475 914 97 48 23 chrX 5048804 5048995 -171925145 - MER4D LTR ERV1 -507 365 62 * 970 107 47 0 chrX 5048981 5049130 -171925010 - MER49 LTR ERV1 -629 294 139 1666 114 0 25 chrX 5049317 5049553 -171924587 + MER30 DNA MER1_type 1 230 0 523 305 52 14 chrX 5049911 5049950 -171924190 - MIR SINE MIR -43 219 183 1919 139 133 52 chrX 5049950 5050218 -171923922 + LTR54B LTR ERV1 1 246 -252 1959 155 3 3 chrX 5050218 5050521 -171923619 - AluJo SINE Alu -8 304 2 1919 139 133 52 chrX 5050521 5050712 -171923428 + LTR54B LTR ERV1 246 497 -1 523 305 52 14 chrX 5050712 5050882 -171923258 - MIR SINE MIR -79 183 2 2236 123 0 0 chrX 5051491 5051799 -171922341 + AluSx SINE Alu 1 308 -4 234 373 102 8 chrX 5052095 5052213 -171921927 + MER91A DNA MER1_type 21 149 -47 1706 175 125 0 chrX 5053175 5053478 -171920662 + MER58B DNA MER1_type 1 341 0 277 285 122 47 chrX 5053479 5053693 -171920447 + MLT1K LTR MaLR 69 298 -290 4779 183 55 9 chrX 5053866 5055546 -171918594 - L1MB2 LINE L1 0 6235 4156 198 0 0 0 chrX 5055546 5055568 -171918572 + (TG)n Simple_repeat Simple_repeat 1 22 0 4779 183 55 9 chrX 5055568 5056028 -171918112 - L1MB2 LINE L1 -2079 4156 3719 26457 153 16 21 chrX 5056034 5062148 -171911992 + L1PA10 LINE L1 271 6449 -34 1524 153 16 4 chrX 5062148 5062396 -171911744 - Tigger1 DNA MER2_type -89 2329 2079 2376 236 38 39 chrX 5062414 5063320 -171910820 - L1MB2 LINE L1 -4516 1625 606 404 334 16 52 chrX 5063513 5063897 -171910243 - L1MB2 LINE L1 -5523 608 4 1807 130 18 0 chrX 5063927 5064211 -171909929 - L1MC3 LINE L1 -18 7767 7479 382 308 25 13 chrX 5064316 5064475 -171909665 - MIR3 SINE MIR -40 168 8 5519 84 6 4 chrX 5064648 5065361 -171908779 - L1PB1 LINE L1 0 6151 5438 2439 104 0 0 chrX 5065374 5065681 -171908459 - AluSg SINE Alu -3 307 1 216 97 0 0 chrX 5065801 5065832 -171908308 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 274 246 0 0 chrX 5065856 5065917 -171908223 - L2 LINE L2 -3 3310 3250 1275 175 0 44 chrX 5066896 5067125 -171907015 + MER58A DNA MER1_type 2 220 -4 3533 152 19 21 chrX 5067357 5067806 -171906334 + MER45B DNA AcHobo 421 870 -711 2291 101 0 0 chrX 5067806 5068094 -171906046 + AluSc SINE Alu 1 288 -21 3533 152 19 21 chrX 5068094 5068263 -171905877 + MER45B DNA AcHobo 870 1038 -2 2330 102 3 0 chrX 5068643 5068947 -171905193 - AluSp SINE Alu -8 305 1 441 282 16 8 chrX 5071431 5071555 -171902585 + MER94 DNA DNA 8 132 -2 248 241 11 64 chrX 5071563 5071750 -171902390 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 310 308 0 32 chrX 5071847 5072003 -171902137 + CT-rich Low_complexity Low_complexity 2 152 0 573 204 219 0 chrX 5072234 5072371 -171901769 + MER5B DNA MER1_type 11 177 -1 227 53 0 26 chrX 5074359 5074397 -171899743 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2890 162 5 43 chrX 5074402 5075026 -171899114 + L1MB4 LINE L1 5558 6157 -23 236 189 0 0 chrX 5075396 5075449 -171898691 + (TA)n Simple_repeat Simple_repeat 1 53 0 233 50 0 50 chrX 5077293 5077333 -171896807 + (TTTCC)n Simple_repeat Simple_repeat 2 39 0 320 242 30 20 chrX 5077911 5078010 -171896130 - MER5A DNA MER1_type -2 187 88 553 162 29 108 chrX 5078085 5078289 -171895851 + MER53 DNA DNA 1 188 -1 199 277 0 0 chrX 5078339 5078386 -171895754 + MER5A DNA MER1_type 29 75 -114 415 235 106 59 chrX 5078450 5078620 -171895520 + MER5B DNA MER1_type 1 178 0 32 0 0 0 chrX 5078637 5078669 -171895471 + AT_rich Low_complexity Low_complexity 1 32 0 862 175 34 34 chrX 5078735 5078912 -171895228 + MER5A DNA MER1_type 13 189 0 408 247 170 46 chrX 5078915 5079109 -171895031 + MIR SINE MIR 34 251 -11 431 243 22 20 chrX 5079859 5079988 -171894152 + MIR SINE MIR 20 143 -66 845 187 144 0 chrX 5080005 5080192 -171893948 + MER20 DNA MER1_type 6 219 0 318 323 31 0 chrX 5080192 5080288 -171893852 + MIR SINE MIR 158 256 -6 392 235 228 7 chrX 5080375 5080524 -171893616 + MIR SINE MIR 50 231 -31 327 296 136 8 chrX 5080661 5080793 -171893347 - MIR SINE MIR -109 153 5 222 333 101 0 chrX 5082575 5082674 -171891466 + L2 LINE L2 3164 3272 0 266 300 56 11 chrX 5082771 5082861 -171891279 - MIR SINE MIR -12 250 157 403 221 115 111 chrX 5082952 5083196 -171890944 + L1ME4a LINE L1 5871 6115 -6 519 243 88 21 chrX 5083288 5083616 -171890524 + L1MC4a LINE L1 5475 5943 -1865 390 318 35 29 chrX 5083632 5083802 -171890338 + MIR SINE MIR 21 191 -71 468 242 0 0 chrX 5083847 5083942 -171890198 - L2 LINE L2 -1 3312 3218 856 170 18 18 chrX 5084016 5084187 -171889953 + MSTD LTR MaLR 5 175 -221 203 226 147 20 chrX 5084353 5084455 -171889685 - L2 LINE L2 0 3313 3199 484 326 14 0 chrX 5085260 5085293 -171888847 + MIR3 SINE MIR 42 73 -135 957 215 51 9 chrX 5085293 5085507 -171888633 - MER58A DNA MER1_type -1 223 1 484 326 14 0 chrX 5085507 5085620 -171888520 + MIR3 SINE MIR 73 190 -18 241 194 0 75 chrX 5086846 5086913 -171887227 + CT-rich Low_complexity Low_complexity 3 64 0 619 247 146 0 chrX 5087993 5088151 -171885989 - MER5A DNA MER1_type 0 189 9 1669 121 8 8 chrX 5088465 5088704 -171885436 - AluSg SINE Alu -13 297 59 870 151 7 0 chrX 5089312 5089451 -171884689 + MER58B DNA MER1_type 202 341 0 23 33 0 0 chrX 5090520 5090550 -171883590 + AT_rich Low_complexity Low_complexity 1 30 0 473 263 15 0 chrX 5091150 5091287 -171882853 + L2 LINE L2 2295 2433 -881 1293 200 29 6 chrX 5091470 5091785 -171882355 + MER33 DNA MER1_type 2 323 -1 202 233 23 0 chrX 5091922 5091965 -171882175 + L2 LINE L2 3265 3308 -5 211 301 178 0 chrX 5091990 5092063 -171882077 + MIR3 SINE MIR 98 183 -25 2098 132 69 65 chrX 5092192 5092421 -171881719 + Tigger2a DNA MER2_type 1 234 -2474 2383 80 0 6 chrX 5092421 5092733 -171881407 - AluY SINE Alu -1 310 1 2098 132 69 65 chrX 5092733 5092935 -171881205 + Tigger2a DNA MER2_type 234 434 0 207 146 0 0 chrX 5094035 5094076 -171880064 + (TTTTC)n Simple_repeat Simple_repeat 5 45 0 1834 159 18 11 chrX 5094593 5094876 -171879264 + AluJb SINE Alu 1 285 -27 983 145 6 0 chrX 5094876 5095048 -171879092 + (TA)n Simple_repeat Simple_repeat 1 173 0 346 327 99 12 chrX 5095535 5095697 -171878443 - MIR SINE MIR -51 211 36 1566 162 7 33 chrX 5095797 5096100 -171878040 - AluJo SINE Alu -17 295 1 32376 37 4 2 chrX 5096923 5101858 -171872282 - L1PA4 LINE L1 0 6155 1209 1998 134 10 13 chrX 5104842 5105155 -171868985 + AluSx SINE Alu 1 312 0 199 325 78 0 chrX 5109159 5109236 -171864904 + L3 LINE CR1 1483 1565 -12 948 217 54 5 chrX 5110293 5110496 -171863644 - MER58A DNA MER1_type -1 223 11 427 263 91 20 chrX 5110484 5110682 -171863458 + LTR16C LTR ERVL 256 467 -24 * 197 33 33 0 chrX 5110683 5110713 -171863427 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1937 142 3 3 chrX 5111397 5111685 -171862455 - AluJb SINE Alu -24 288 1 251 220 0 0 chrX 5112227 5112286 -171861854 + MLT1I LTR MaLR 85 143 -266 333 263 35 26 chrX 5112359 5112473 -171861667 + MLT1I LTR MaLR 260 374 -35 351 293 43 9 chrX 5112609 5112725 -171861415 + MIR SINE MIR 3 122 -140 2821 234 66 5 chrX 5113832 5115077 -171859063 + L1ME1 LINE L1 4841 6160 -6 182 36 0 36 chrX 5115443 5115471 -171858669 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 402 203 203 15 chrX 5115649 5115782 -171858358 + MLT1H LTR MaLR 96 253 -296 253 288 184 0 chrX 5115862 5115987 -171858153 + MLT1H LTR MaLR 398 545 -4 1683 245 96 21 chrX 5116008 5116531 -171857609 - MER68 LTR ERV1 0 562 1 638 231 55 28 chrX 5116774 5116956 -171857184 + MIR SINE MIR 54 240 -22 370 208 189 19 chrX 5117907 5118013 -171856127 + MER63 DNA MER1_type 1 750 -312 292 188 12 12 chrX 5118077 5118157 -171855983 + GA-rich Low_complexity Low_complexity 4 83 0 255 271 123 25 chrX 5118175 5118297 -171855843 - MIR SINE MIR -6 256 123 1609 101 5 0 chrX 5118298 5118506 -171855634 + AluSp SINE Alu 1 209 -104 337 178 44 11 chrX 5119196 5119286 -171854854 - L1MD2 LINE L1 -2 6357 6265 271 203 68 0 chrX 5119291 5119365 -171854775 - L1MD3 LINE L1 -121 7874 7796 300 91 0 0 chrX 5122627 5122671 -171851469 + (CA)n Simple_repeat Simple_repeat 1 44 0 566 277 142 35 chrX 5123171 5123463 -171850677 - L2 LINE L2 -257 3056 2744 183 156 0 0 chrX 5123496 5123528 -171850612 + T-rich Low_complexity Low_complexity 1 32 0 272 303 88 72 chrX 5123666 5124121 -171850019 + MLT1J LTR MaLR 1 462 -49 1715 184 0 3 chrX 5124380 5124686 -171849454 - AluJb SINE Alu 0 305 1 262 313 20 61 chrX 5125000 5125147 -171848993 - MIR SINE MIR -50 212 72 24 0 0 0 chrX 5126081 5126105 -171848035 + AT_rich Low_complexity Low_complexity 1 24 0 960 226 18 18 chrX 5126979 5127196 -171846944 + MER20 DNA MER1_type 3 219 0 1653 151 42 33 chrX 5127569 5127900 -171846240 - THE1B LTR MaLR 0 364 31 469 277 67 25 chrX 5128017 5128255 -171845885 - MER112 DNA MER1_type -12 248 1 553 258 71 54 chrX 5128677 5128917 -171845223 + MIR SINE MIR 19 262 0 711 219 144 0 chrX 5129072 5129232 -171844908 - MER5A DNA MER1_type -6 183 1 2197 141 60 29 chrX 5129462 5129844 -171844296 + MSTD LTR MaLR 1 394 -2 771 231 87 28 chrX 5130832 5131118 -171843022 + MER33 DNA MER1_type 4 306 -18 3559 194 11 7 chrX 5131137 5131886 -171842254 - L1MB7 LINE L1 -16 6168 5417 596 188 8 0 chrX 5132225 5132342 -171841798 + MER94 DNA DNA 16 133 -1 357 288 37 85 chrX 5133805 5134087 -171840053 + LTR16A1 LTR ERVL 185 468 -23 765 191 56 0 chrX 5134109 5134287 -171839853 - MER53 DNA DNA 0 189 2 246 332 73 41 chrX 5134298 5134454 -171839686 - MIR SINE MIR -65 143 21 202 337 79 11 chrX 5134874 5134963 -171839177 + MIR SINE MIR 1 95 -167 1839 246 32 14 chrX 5134974 5135478 -171838662 - LTR40a LTR ERVL -1 518 6 251 241 52 0 chrX 5135483 5135541 -171838599 + MIR SINE MIR 113 173 -89 219 322 0 0 chrX 5135697 5135756 -171838384 - L2 LINE L2 -5 3308 3250 190 259 185 44 chrX 5135764 5135899 -171838241 + MIR SINE MIR 39 192 -70 244 217 43 29 chrX 5136710 5136779 -171837361 + HAL1b LINE L1 415 484 -864 214 194 28 0 chrX 5136925 5136997 -171837143 + GA-rich Low_complexity Low_complexity 2 75 0 201 39 0 0 chrX 5137034 5137060 -171837080 + (TG)n Simple_repeat Simple_repeat 2 27 0 488 164 107 0 chrX 5137552 5137674 -171836466 + L1MA4 LINE L1 6166 6300 0 24 32 0 0 chrX 5137746 5137777 -171836363 + AT_rich Low_complexity Low_complexity 1 31 0 495 305 147 29 chrX 5138020 5138087 -171836053 + L1M4 LINE L1 3230 3288 -2858 2054 134 3 0 chrX 5138087 5138385 -171835755 + AluSx SINE Alu 1 299 -13 495 305 147 29 chrX 5138385 5138773 -171835367 + L1M4 LINE L1 3288 3739 -2407 229 276 15 45 chrX 5138781 5138915 -171835225 + L1M4 LINE L1 3910 4039 -2107 486 310 62 48 chrX 5139129 5139533 -171834607 + L1M4 LINE L1 4292 4702 -1444 256 271 25 17 chrX 5139748 5139866 -171834274 + MLT1L LTR MaLR 147 265 -350 205 354 34 72 chrX 5140327 5140590 -171833550 + L2 LINE L2 2838 3090 -182 816 128 0 0 chrX 5141501 5141610 -171832530 + FLAM_C SINE Alu 11 119 -24 1514 283 38 17 chrX 5141615 5142085 -171832055 + MLT1E LTR MaLR 114 593 0 574 295 51 30 chrX 5142095 5142329 -171831811 - L2 LINE L2 -173 3140 2902 207 250 0 0 chrX 5142935 5142975 -171831165 + L2 LINE L2 3218 3257 -15 289 354 63 8 chrX 5143175 5143302 -171830838 + L2 LINE L2 3139 3272 0 300 301 82 27 chrX 5143846 5143992 -171830148 - L2 LINE L2 0 3313 3160 1088 191 77 111 chrX 5144289 5144667 -171829473 - MLT1A1 LTR MaLR 0 365 1 610 261 18 125 chrX 5145178 5145722 -171828418 + HAL1 LINE L1 526 1011 -1496 * 718 303 110 42 chrX 5145717 5146221 -171827919 + HAL1 LINE L1 1672 2249 -258 2239 48 0 7 chrX 5146221 5146494 -171827646 + AluY SINE Alu 41 311 0 718 303 110 42 chrX 5146494 5146772 -171827368 + HAL1 LINE L1 2249 2507 0 709 239 78 29 chrX 5147289 5147494 -171826646 - MIR SINE MIR 0 262 48 1050 166 52 14 chrX 5148623 5148834 -171825306 - MER20 DNA MER1_type 0 219 1 314 219 238 9 chrX 5149783 5149888 -171824252 + MER5A DNA MER1_type 61 189 0 220 229 0 0 chrX 5150399 5150447 -171823693 + T-rich Low_complexity Low_complexity 1 48 0 403 101 0 76 chrX 5151114 5151222 -171822918 - AluSg/x SINE Alu 0 309 216 239 293 13 93 chrX 5151794 5151944 -171822196 - MIR SINE MIR -6 256 119 1942 155 0 13 chrX 5152606 5152916 -171821224 - AluJo SINE Alu -6 306 1 712 290 178 55 chrX 5153943 5154757 -171819383 - L2 LINE L2 -571 2743 1830 1284 206 35 14 chrX 5154765 5155109 -171819031 - Charlie1 DNA MER1_type 0 2761 2411 200 371 67 0 chrX 5155187 5155276 -171818864 - L2 LINE L2 -1826 1488 1394 2490 84 0 3 chrX 5155734 5156045 -171818095 + AluSg SINE Alu 1 310 0 701 150 8 0 chrX 5156425 5156558 -171817582 + (TCCA)n Simple_repeat Simple_repeat 1 134 0 254 286 91 38 chrX 5158042 5158252 -171815888 + L2 LINE L2 2140 2360 -954 257 239 22 22 chrX 5159347 5159481 -171814659 + GA-rich Low_complexity Low_complexity 3 136 0 23 33 0 0 chrX 5159929 5159959 -171814181 + AT_rich Low_complexity Low_complexity 1 30 0 201 261 108 63 chrX 5160665 5160776 -171813364 + MIR SINE MIR 2 117 -145 291 299 204 34 chrX 5162008 5162155 -171811985 + MIR SINE MIR 14 185 -77 708 249 12 25 chrX 5162155 5162407 -171811733 - LTR16C LTR ERVL 0 491 202 316 224 93 107 chrX 5163726 5163931 -171810209 + MLT1J LTR MaLR 224 425 -86 * 1579 228 102 7 chrX 5163927 5164379 -171809761 + HsTC2 DNA Tc2 19 513 -1385 1011 177 39 99 chrX 5164376 5164709 -171809431 + HsTC2 DNA Tc2 1269 1757 -141 * 297 209 309 0 chrX 5166264 5166374 -171807766 - MER20 DNA MER1_type -75 144 1 252 267 47 58 chrX 5167038 5167124 -171807016 - MER5B DNA MER1_type -36 142 58 21 0 0 0 chrX 5167217 5167238 -171806902 + AT_rich Low_complexity Low_complexity 1 21 0 231 97 0 0 chrX 5167263 5167294 -171806846 + LTR47A LTR ERVL 1 31 -421 1607 136 101 0 chrX 5167342 5167628 -171806512 + LTR47A LTR ERVL 130 444 -8 930 265 9 9 chrX 5167713 5167932 -171806208 + MER58A DNA MER1_type 2 220 -4 662 332 21 17 chrX 5167982 5168220 -171805920 - MIR SINE MIR -3 259 21 2390 176 73 13 chrX 5168310 5168786 -171805354 + MLT1D LTR MaLR 1 505 0 1088 169 9 65 chrX 5169347 5169578 -171804562 - MER20 DNA MER1_type 0 219 2 990 89 0 0 chrX 5170066 5170201 -171803939 + L1MA2 LINE L1 6170 6304 0 781 219 13 0 chrX 5170419 5170570 -171803570 - MER5B DNA MER1_type 0 178 26 845 263 13 18 chrX 5170576 5170800 -171803340 + MER58A DNA MER1_type 1 223 -1 332 303 93 18 chrX 5171041 5171374 -171802766 + L1MC5 LINE L1 7325 7682 -279 988 284 139 60 chrX 5171903 5172581 -171801559 - L2 LINE L2 -8 3305 2551 1574 152 32 127 chrX 5172581 5172982 -171801158 - MLT1A1 LTR MaLR -2 363 1 988 284 139 60 chrX 5172982 5173152 -171800988 - L2 LINE L2 -762 2551 2396 317 281 230 7 chrX 5173180 5173319 -171800821 + L2 LINE L2 2896 3065 -248 300 232 9 18 chrX 5174217 5174329 -171799811 + GA-rich Low_complexity Low_complexity 3 113 0 256 281 16 0 chrX 5174416 5174480 -171799660 + L2 LINE L2 2928 2992 -321 2921 124 18 23 chrX 5175739 5176174 -171797966 + Tigger2a DNA MER2_type 2 434 0 287 353 15 29 chrX 5176302 5176438 -171797702 - L2 LINE L2 -32 3240 3107 360 269 0 13 chrX 5177665 5177743 -171796397 - L2 LINE L2 -45 3268 3192 21 0 0 0 chrX 5178309 5178330 -171795810 + AT_rich Low_complexity Low_complexity 1 21 0 201 156 0 0 chrX 5178889 5178921 -171795219 + (TATG)n Simple_repeat Simple_repeat 2 33 0 592 280 100 18 chrX 5178923 5179312 -171794828 + L1ME4a LINE L1 5585 6005 -116 216 173 13 40 chrX 5180890 5180965 -171793175 + GA-rich Low_complexity Low_complexity 4 76 0 202 194 0 0 chrX 5181317 5181353 -171792787 + L3 LINE CR1 1540 1575 -2 373 113 0 0 chrX 5182319 5182372 -171791768 - MER53 DNA DNA -1 188 136 233 143 0 0 chrX 5182379 5182414 -171791726 - MER53 DNA DNA -154 35 1 591 122 0 0 chrX 5182587 5182677 -171791463 - AluSp/q SINE Alu 0 313 224 23 0 0 0 chrX 5182725 5182748 -171791392 + AT_rich Low_complexity Low_complexity 1 23 0 1754 120 4 29 chrX 5182941 5183216 -171790924 + AluSx SINE Alu 38 305 -7 304 202 228 35 chrX 5183216 5183330 -171790810 - MER3 DNA MER1_type -73 136 1 480 250 122 53 chrX 5183552 5183740 -171790400 + MIR3 SINE MIR 2 202 -6 180 353 168 37 chrX 5185276 5185466 -171788674 + MIR SINE MIR 33 247 -15 3544 145 25 58 chrX 5185574 5185755 -171788385 - L1MA7 LINE L1 0 6291 6106 2147 114 3 3 chrX 5185755 5186053 -171788087 - AluSx SINE Alu -14 298 1 3544 145 25 58 chrX 5186053 5186393 -171787747 - L1MA7 LINE L1 -185 6106 5756 297 0 0 0 chrX 5186393 5186426 -171787714 + (TA)n Simple_repeat Simple_repeat 1 33 0 3544 145 25 58 chrX 5186426 5186610 -171787530 - L1MA7 LINE L1 -535 5756 5607 2424 87 7 7 chrX 5186610 5186920 -171787220 - AluSg SINE Alu 0 310 1 3544 145 25 58 chrX 5186920 5186941 -171787199 - L1MA7 LINE L1 -684 5607 5587 952 211 14 19 chrX 5186981 5187190 -171786950 - L1ME3 LINE L1 -1 6161 5954 1758 184 0 7 chrX 5190712 5191011 -171783129 - AluJb SINE Alu -15 297 1 602 299 45 0 chrX 5191217 5191371 -171782769 + MIR3 SINE MIR 37 197 -11 301 329 50 50 chrX 5191556 5191696 -171782444 - L2 LINE L2 0 3272 3133 895 167 45 81 chrX 5191745 5191967 -171782173 - MER20 DNA MER1_type 0 219 6 555 298 63 21 chrX 5192292 5192530 -171781610 - L2 LINE L2 -3 3310 3063 1208 0 21 0 chrX 5192665 5192807 -171781333 + (CTATG)n Simple_repeat Simple_repeat 3 147 0 378 0 0 0 chrX 5195595 5195637 -171778503 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 65 0 0 chrX 5195648 5195694 -171778446 + AT_rich Low_complexity Low_complexity 1 46 0 189 154 0 0 chrX 5198594 5198633 -171775507 + (TG)n Simple_repeat Simple_repeat 2 40 0 234 322 26 26 chrX 5199147 5199262 -171774878 - L2 LINE L2 0 3272 3158 1103 195 96 54 chrX 5199526 5200067 -171774073 + MLT1E3 LTR MaLR 1 622 -2 233 345 46 0 chrX 5200302 5200389 -171773751 - L2 LINE L2 -41 3231 3141 653 200 18 24 chrX 5200644 5200809 -171773331 + MER96B DNA MER1_type? 244 407 -10 651 241 37 6 chrX 5202822 5202984 -171771156 - MER5B DNA MER1_type -5 173 7 376 203 76 0 chrX 5203249 5203328 -171770812 - MER53 DNA DNA 0 189 105 372 229 72 0 chrX 5203261 5203344 -171770796 + MER53 DNA DNA 23 111 -78 * 256 116 23 0 chrX 5203343 5203386 -171770754 + MER53 DNA DNA 68 111 -78 * 623 124 22 66 chrX 5203383 5203520 -171770620 - MER53 DNA DNA -58 131 1 219 303 66 0 chrX 5203553 5203629 -171770511 - MIR SINE MIR -11 251 171 908 144 0 0 chrX 5204959 5205091 -171769049 - FLAM_C SINE Alu -1 132 1 21 57 0 0 chrX 5205336 5205371 -171768769 + AT_rich Low_complexity Low_complexity 1 35 0 273 365 18 41 chrX 5205478 5205697 -171768443 + L2 LINE L2 2857 3070 -202 43 35 0 0 chrX 5206045 5206102 -171768038 + AT_rich Low_complexity Low_complexity 1 57 0 2198 128 0 0 chrX 5206377 5206683 -171767457 - AluSx SINE Alu -6 306 1 223 175 235 0 chrX 5207075 5207164 -171766976 - MIR SINE MIR -78 130 1 203 297 45 90 chrX 5207530 5207796 -171766344 + L2 LINE L2 2462 2715 -599 197 373 45 0 chrX 5208557 5208667 -171765473 + L2 LINE L2 3141 3255 -17 233 345 42 47 chrX 5208718 5208909 -171765231 + L2 LINE L2 2568 2757 -557 198 315 45 84 chrX 5209043 5209221 -171764919 + L2 LINE L2 2933 3103 -169 182 250 313 0 chrX 5209305 5209369 -171764771 + L2 LINE L2 3189 3272 0 218 366 52 0 chrX 5209931 5210065 -171764075 - MIR3 SINE MIR -61 147 7 2008 205 12 2 chrX 5210684 5211088 -171763052 + MER74A LTR ERVL 121 528 -30 7974 38 1 0 chrX 5212030 5213073 -171761067 + L1PA5 LINE L1 5111 6154 0 21 36 0 0 chrX 5213073 5213101 -171761039 + AT_rich Low_complexity Low_complexity 1 28 0 896 199 187 19 chrX 5213282 5213584 -171760556 + MLT1C LTR MaLR 133 461 -6 2346 109 0 6 chrX 5215512 5215824 -171758316 + AluSg SINE Alu 1 310 0 2033 206 74 0 chrX 5217085 5217531 -171756609 + L1MB8 LINE L1 5699 6177 -1 519 227 62 8 chrX 5217853 5217981 -171756159 + MIR SINE MIR 128 262 0 465 214 0 0 chrX 5218421 5218510 -171755630 + MER3 DNA MER1_type 1 89 -120 499 152 22 0 chrX 5218594 5218686 -171755454 - L1MB7 LINE L1 0 6184 6091 970 166 44 6 chrX 5218687 5218868 -171755272 - MLT1A1 LTR MaLR -173 192 5 2985 137 126 9 chrX 5218966 5219499 -171754641 + LTR49 LTR ERV1 1 595 0 2004 131 3 17 chrX 5219800 5220097 -171754043 + AluJb SINE Alu 1 293 -19 407 315 61 30 chrX 5221241 5221438 -171752702 + MIR SINE MIR 60 262 0 792 213 11 44 chrX 5221584 5221767 -171752373 - MER69A DNA AcHobo 0 177 1 309 224 24 35 chrX 5222635 5222720 -171751420 + L1ME3A LINE L1 5415 5498 -676 2535 244 37 18 chrX 5223100 5223777 -171750363 + L1ME3A LINE L1 5476 6165 -5 2287 88 7 0 chrX 5224092 5224386 -171749754 - AluSc SINE Alu -13 296 1 23 0 0 0 chrX 5225127 5225150 -171748990 + AT_rich Low_complexity Low_complexity 1 23 0 471 266 140 63 chrX 5225393 5225806 -171748334 - HAL1b LINE L1 -428 920 476 180 0 0 0 chrX 5226670 5226690 -171747450 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chrX 5227513 5227534 -171746606 + AT_rich Low_complexity Low_complexity 1 21 0 1898 160 10 3 chrX 5227744 5228051 -171746089 + AluJo SINE Alu 1 309 -3 27 0 0 0 chrX 5228109 5228136 -171746004 + AT_rich Low_complexity Low_complexity 1 27 0 257 317 89 24 chrX 5228716 5228892 -171745248 - MIR SINE MIR -57 205 13 27 0 0 0 chrX 5279848 5279875 -171694265 + AT_rich Low_complexity Low_complexity 1 27 0 1008 183 142 0 chrX 5280404 5280623 -171693517 - MIR SINE MIR -11 251 2 432 293 159 0 chrX 5280647 5280804 -171693336 + MER5A DNA MER1_type 1 182 -7 568 190 52 95 chrX 5281150 5281382 -171692758 + L1ME3A LINE L1 5927 6148 -22 697 211 23 12 chrX 5281631 5281802 -171692338 - L1MD3 LINE L1 -29 7966 7794 229 162 0 59 chrX 5281955 5282023 -171692117 - L1MC4 LINE L1 -1339 6703 6640 773 157 0 132 chrX 5282785 5283020 -171691120 - MER20 DNA MER1_type 0 219 16 208 291 55 63 chrX 5283190 5283317 -171690823 - MIR3 SINE MIR -5 203 78 825 279 95 23 chrX 5284301 5284648 -171689492 + MLT1J2 LTR MaLR 39 410 -40 21 0 0 0 chrX 5285212 5285233 -171688907 + AT_rich Low_complexity Low_complexity 1 21 0 1420 160 254 32 chrX 5285415 5285753 -171688387 + MER47B DNA MER2_type 6 418 0 480 275 26 54 chrX 5285942 5286152 -171687988 + MLT1H LTR MaLR 1 247 -302 261 252 78 35 chrX 5286250 5286365 -171687775 + MLT1H LTR MaLR 430 549 0 2586 35 0 16 chrX 5286442 5286757 -171687383 - AluY SINE Alu -1 310 1 768 229 41 0 chrX 5287333 5287503 -171686637 + MER5B DNA MER1_type 1 177 -1 294 246 140 35 chrX 5288192 5288306 -171685834 + L2 LINE L2 2252 2377 -937 337 308 0 0 chrX 5288430 5288521 -171685619 + L2 LINE L2 2395 2485 -829 1336 171 171 23 chrX 5288523 5288868 -171685272 + MSTD LTR MaLR 1 396 0 1262 274 98 19 chrX 5288868 5289292 -171684848 + L2 LINE L2 2485 2954 -359 495 259 0 17 chrX 5289292 5289408 -171684732 + MER81 DNA DNA 1 114 0 1262 274 98 19 chrX 5289408 5289484 -171684656 + L2 LINE L2 2954 3023 -290 208 294 119 8 chrX 5289786 5289912 -171684228 - MIR SINE MIR -74 188 49 554 322 18 0 chrX 5289976 5290147 -171683993 - MIR SINE MIR -19 243 70 716 151 42 17 chrX 5290192 5290311 -171683829 + FLAM_C SINE Alu 1 122 -11 35 0 0 0 chrX 5290319 5290354 -171683786 + AT_rich Low_complexity Low_complexity 1 35 0 813 249 11 0 chrX 5290354 5290535 -171683605 - MER58A DNA MER1_type -41 183 1 23 33 0 0 chrX 5290696 5290726 -171683414 + AT_rich Low_complexity Low_complexity 1 30 0 249 174 70 58 chrX 5290848 5290934 -171683206 + L1MC5 LINE L1 7831 7917 -44 569 352 134 30 chrX 5291468 5292583 -171681557 - L2 LINE L2 -5 3267 2033 190 326 116 0 chrX 5292624 5292710 -171681430 + MIR SINE MIR 129 224 -38 545 275 12 12 chrX 5292806 5292973 -171681167 + MLT1J2 LTR MaLR 2 168 -282 1458 202 18 21 chrX 5292974 5293311 -171680829 - MLT1C LTR MaLR 0 467 132 462 279 80 34 chrX 5293315 5293552 -171680588 + MLT1J2 LTR MaLR 168 415 -35 2110 104 35 0 chrX 5293587 5293925 -171680215 + L1MA4 LINE L1 5945 6294 -6 24 32 0 0 chrX 5293926 5293957 -171680183 + AT_rich Low_complexity Low_complexity 1 31 0 2035 183 7 27 chrX 5294021 5294425 -171679715 - MSTD LTR MaLR 0 396 1 215 328 99 6 chrX 5294625 5294796 -171679344 - L2 LINE L2 -1648 1666 1480 222 311 138 16 chrX 5294871 5295002 -171679138 - MIR SINE MIR -67 141 9 193 302 48 0 chrX 5297375 5297438 -171676702 + L2 LINE L2 2215 2280 -1034 303 352 213 0 chrX 5298216 5298540 -171675600 + L2 LINE L2 2282 2674 -640 306 268 65 29 chrX 5300372 5300510 -171673630 + MIR SINE MIR 39 181 -81 569 318 70 4 chrX 5300565 5300807 -171673333 - MIR SINE MIR -1 261 4 370 298 48 52 chrX 5300884 5301156 -171672984 - LTR16A1 LTR ERVL 0 457 187 447 35 0 0 chrX 5302498 5302555 -171671585 + (CA)n Simple_repeat Simple_repeat 2 58 0 243 0 0 0 chrX 5302554 5302581 -171671559 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 2400 95 0 0 chrX 5303542 5303847 -171670293 - AluSx SINE Alu -7 305 1 329 259 52 30 chrX 5303859 5303994 -171670146 + L1ME4a LINE L1 5949 6086 -35 342 349 18 0 chrX 5304673 5304782 -171669358 + MIR SINE MIR 29 139 -69 818 163 0 22 chrX 5304918 5305053 -171669087 + FLAM_C SINE Alu 2 133 0 1330 161 5 27 chrX 5305291 5305515 -171668625 + MER20 DNA MER1_type 1 219 0 1632 203 19 63 chrX 5306621 5307035 -171667105 - MSTD LTR MaLR 0 396 1 189 0 0 0 chrX 5307070 5307091 -171667049 + (A)n Simple_repeat Simple_repeat 1 21 0 713 286 65 14 chrX 5307443 5307796 -171666344 - MER115 DNA AcHobo 0 693 323 321 231 0 51 chrX 5307922 5308000 -171666140 - MER58B DNA MER1_type 0 341 268 306 0 0 0 chrX 5308473 5308507 -171665633 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1629 183 53 17 chrX 5308509 5308809 -171665331 + AluJo SINE Alu 2 312 0 745 198 0 0 chrX 5309422 5309548 -171664592 + FLAM_C SINE Alu 1 126 -17 1815 189 0 7 chrX 5309565 5309867 -171664273 + AluJo SINE Alu 1 300 -12 380 169 13 0 chrX 5310605 5310682 -171663458 + CT-rich Low_complexity Low_complexity 1 78 0 1986 155 0 3 chrX 5310682 5310986 -171663154 - AluJo SINE Alu -9 303 1 238 281 53 18 chrX 5312157 5312271 -171661869 + MLT1J1 LTR MaLR 21 138 -308 997 199 14 5 chrX 5312337 5312553 -171661587 - MER58B DNA MER1_type -1 340 123 1756 205 6 16 chrX 5312598 5312964 -171661176 + MLT1A1 LTR MaLR 4 365 0 291 282 154 13 chrX 5313001 5313150 -171660990 + MLT1J2 LTR MaLR 281 450 0 2089 84 3 50 chrX 5314165 5314495 -171659645 + AluSp SINE Alu 1 316 0 735 204 26 0 chrX 5314497 5314649 -171659491 - MER58A DNA MER1_type -23 201 46 1037 179 19 5 chrX 5315545 5315752 -171658388 - MER20 DNA MER1_type 0 219 10 243 157 0 59 chrX 5316213 5316264 -171657876 + MIR SINE MIR 206 253 -9 291 308 70 26 chrX 5316297 5316483 -171657657 - MIR SINE MIR -46 216 19 553 245 162 10 chrX 5316634 5316838 -171657302 - MIR SINE MIR -8 254 20 202 233 133 33 chrX 5317556 5317616 -171656524 + L2 LINE L2 3207 3272 0 260 27 27 0 chrX 5318589 5318626 -171655514 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 247 248 99 20 chrX 5318692 5318793 -171655347 - L2 LINE L2 -5 3308 3200 909 122 21 43 chrX 5319173 5319361 -171654779 - MER53 DNA DNA 0 189 6 275 345 62 0 chrX 5319703 5319816 -171654324 + L2 LINE L2 3107 3226 -46 2461 95 32 16 chrX 5320022 5320391 -171653749 + THE1C LTR MaLR 1 375 0 467 234 9 0 chrX 5320521 5320628 -171653512 - MER94 DNA DNA -3 131 24 270 264 12 49 chrX 5320931 5321024 -171653116 - MER5A DNA MER1_type -68 121 21 193 275 0 62 chrX 5320965 5321045 -171653095 + MER5B DNA MER1_type 103 177 -1 * 301 271 100 2 chrX 5321199 5321369 -171652771 - MIR SINE MIR -35 227 1 834 183 0 0 chrX 5321391 5321528 -171652612 + AluJb SINE Alu 138 274 -38 700 11 32 75 chrX 5321528 5321716 -171652424 + (TA)n Simple_repeat Simple_repeat 1 180 0 31 26 0 0 chrX 5321717 5321755 -171652385 + AT_rich Low_complexity Low_complexity 1 38 0 182 338 86 39 chrX 5322619 5322980 -171651160 - L2 LINE L2 -1324 1990 1613 335 331 69 0 chrX 5323156 5323301 -171650839 - MIR SINE MIR -20 242 88 268 325 13 13 chrX 5324309 5324466 -171649674 + MER103 DNA DNA 3 159 -7 345 47 0 0 chrX 5324749 5324792 -171649348 + (TC)n Simple_repeat Simple_repeat 2 44 0 1953 171 0 0 chrX 5324792 5325085 -171649055 - AluJo SINE Alu -19 293 1 30 0 0 0 chrX 5325503 5325533 -171648607 + AT_rich Low_complexity Low_complexity 1 30 0 2415 204 23 18 chrX 5325595 5326109 -171648031 + LTR40a LTR ERVL 1 517 -2 1119 153 0 6 chrX 5326331 5326508 -171647632 + AluJb SINE Alu 133 308 -4 1321 159 0 5 chrX 5328138 5328379 -171645761 + AluJb SINE Alu 85 324 0 968 209 58 5 chrX 5328452 5328658 -171645482 + MER20 DNA MER1_type 1 217 -2 3543 222 22 15 chrX 5328701 5328983 -171645157 + L1ME1 LINE L1 5296 5575 -591 3560 133 13 2 chrX 5328983 5329538 -171644602 - L1PA15 LINE L1 0 6165 5605 3543 222 22 15 chrX 5329538 5330111 -171644029 + L1ME1 LINE L1 5575 6157 -9 24 32 0 0 chrX 5330269 5330300 -171643840 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chrX 5330387 5330415 -171643725 + AT_rich Low_complexity Low_complexity 1 28 0 773 197 0 0 chrX 5330421 5330553 -171643587 - FLAM_C SINE Alu -11 132 1 240 262 24 0 chrX 5330667 5330751 -171643389 - L1ME LINE L1 -277 5844 5759 254 303 31 49 chrX 5330906 5331068 -171643072 + L2 LINE L2 2894 3052 -220 462 264 43 14 chrX 5331928 5332068 -171642072 + MLT1J2 LTR MaLR 21 164 -286 498 237 115 6 chrX 5332110 5332266 -171641874 + L1ME3A LINE L1 5987 6159 -11 2245 107 3 3 chrX 5332392 5332742 -171641398 - AluSp SINE Alu 0 313 3 269 146 0 21 chrX 5332746 5332794 -171641346 + MLT1I LTR MaLR 363 409 0 289 367 73 11 chrX 5332905 5333082 -171641058 + MER5A DNA MER1_type 1 188 -1 1746 195 13 0 chrX 5333219 5333517 -171640623 - AluJb SINE Alu -10 302 1 440 271 31 31 chrX 5333539 5333668 -171640472 + MIR3 SINE MIR 31 159 -49 1041 221 33 0 chrX 5334737 5334950 -171639190 - MER58A DNA MER1_type -4 220 1 344 106 0 0 chrX 5335138 5335185 -171638955 - tRNA-Met-e tRNA tRNA -23 52 6 866 232 76 54 chrX 5336013 5336529 -171637611 + MLT1G1 LTR MaLR 3 588 -2 1047 190 41 41 chrX 5336558 5336779 -171637361 - MER58A DNA MER1_type 0 224 4 200 333 49 12 chrX 5336782 5336863 -171637277 - L2 LINE L2 -349 2964 2881 693 174 56 28 chrX 5336942 5337086 -171637054 + MIR SINE MIR 94 241 -21 194 224 20 20 chrX 5337053 5337102 -171637038 + L2 LINE L2 3213 3261 -11 * 230 200 0 50 chrX 5337482 5337542 -171636598 - MER116 DNA Mariner -23 57 1 21 0 0 0 chrX 5337677 5337698 -171636442 + AT_rich Low_complexity Low_complexity 1 21 0 432 165 58 4 chrX 5339974 5340269 -171633871 - MLT1J LTR MaLR -16 495 59 770 197 101 56 chrX 5340309 5340507 -171633633 + MER58C DNA MER1_type 1 207 -8 24 67 0 0 chrX 5343410 5343455 -171630685 + AT_rich Low_complexity Low_complexity 1 45 0 285 345 5 10 chrX 5344318 5344524 -171629616 - L1MEc LINE L1 -5526 735 531 445 293 87 79 chrX 5344658 5345150 -171628990 - L1MEc LINE L1 -5539 531 36 1012 300 50 65 chrX 5345709 5346233 -171627907 - LTR67 LTR ERVL -2 555 40 200 312 205 39 chrX 5346320 5346388 -171627752 - MIR SINE MIR -6 256 201 210 71 0 0 chrX 5346388 5346416 -171627724 + (TTTAA)n Simple_repeat Simple_repeat 5 32 0 200 312 205 39 chrX 5346416 5346552 -171627588 - MIR SINE MIR -61 201 18 21 100 0 0 chrX 5347190 5347260 -171626880 + AT_rich Low_complexity Low_complexity 1 70 0 460 249 208 17 chrX 5347286 5347459 -171626681 + L3b LINE CR1 1354 1559 -24 1025 140 31 79 chrX 5348300 5348529 -171625611 - MER20 DNA MER1_type 0 219 2 226 265 17 88 chrX 5349255 5349436 -171624704 + LTR33A LTR ERVL 356 523 0 1787 197 39 58 chrX 5349521 5349988 -171624152 - MLT1C LTR MaLR 0 467 10 285 219 61 9 chrX 5351309 5351423 -171622717 - L1ME4a LINE L1 0 6121 6002 1702 148 60 76 chrX 5351464 5351883 -171622257 + LTR37A LTR ERV1 4 415 -11 852 170 0 0 chrX 5351970 5352105 -171622035 + AluJo SINE Alu 1 135 -177 24 0 0 0 chrX 5352105 5352129 -171622011 + AT_rich Low_complexity Low_complexity 1 24 0 370 294 114 5 chrX 5352164 5352211 -171621929 - L1ME4a LINE L1 -301 5820 5780 4081 130 8 65 chrX 5352211 5352944 -171621196 + LTR8 LTR ERV1 1 691 0 370 294 114 5 chrX 5352944 5353080 -171621060 - L1ME4a LINE L1 -341 5780 5617 438 20 0 0 chrX 5353315 5353366 -171620774 + (CA)n Simple_repeat Simple_repeat 2 52 0 217 242 23 181 chrX 5354045 5354260 -171619880 + MER5A DNA MER1_type 9 189 0 200 143 57 0 chrX 5355904 5355974 -171618166 + (TA)n Simple_repeat Simple_repeat 1 74 0 1419 233 95 40 chrX 5356810 5357334 -171616806 + MER68 LTR ERV1 3 555 -7 785 124 8 0 chrX 5358722 5358851 -171615289 + (TTCC)n Simple_repeat Simple_repeat 4 133 0 1020 188 16 0 chrX 5359738 5359924 -171614216 + MER5A DNA MER1_type 1 189 0 7828 187 43 19 chrX 5360543 5363696 -171610444 - L1MC1 LINE L1 -2 6331 3110 426 326 42 14 chrX 5364172 5364316 -171609824 - MIR SINE MIR -27 235 88 323 296 88 8 chrX 5364412 5364537 -171609603 - MIR SINE MIR -122 140 6 205 313 0 0 chrX 5364793 5364860 -171609280 + (CATA)n Simple_repeat Simple_repeat 2 68 0 569 218 9 109 chrX 5364865 5365076 -171609064 + MER112 DNA MER1_type 65 254 -6 37 62 0 0 chrX 5366204 5366269 -171607871 + AT_rich Low_complexity Low_complexity 1 65 0 197 286 93 57 chrX 5367155 5367295 -171606845 + MER5B DNA MER1_type 33 177 -1 3699 79 6 24 chrX 5367457 5368003 -171606137 - L1MA2 LINE L1 0 6304 5769 365 307 31 8 chrX 5369503 5369630 -171604510 - MIR SINE MIR -120 142 13 195 69 0 0 chrX 5370015 5370044 -171604096 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 975 286 111 49 chrX 5370414 5370789 -171603351 + MLT1K LTR MaLR 23 440 -148 965 215 6 0 chrX 5370789 5370966 -171603174 + MER45A DNA AcHobo 1 178 0 975 286 111 49 chrX 5370966 5371104 -171603036 + MLT1K LTR MaLR 440 568 -20 761 318 184 27 chrX 5371109 5371718 -171602422 - L3 LINE CR1 -13 1564 827 914 248 13 22 chrX 5371718 5371944 -171602196 + MER58A DNA MER1_type 1 224 0 761 318 184 27 chrX 5371944 5372041 -171602099 - L3 LINE CR1 -750 827 747 791 183 74 45 chrX 5372265 5372467 -171601673 + MER3 DNA MER1_type 2 209 0 244 311 54 0 chrX 5373099 5373173 -171600967 + L2 LINE L2 2215 2292 -1022 1180 258 67 39 chrX 5373175 5373699 -171600441 + MLT1H LTR MaLR 8 588 -2 409 239 35 35 chrX 5373901 5374014 -171600126 + L2 LINE L2 3160 3272 0 2064 191 0 3 chrX 5374263 5374629 -171599511 - MLT1A1 LTR MaLR 0 365 1 490 268 24 8 chrX 5374796 5374919 -171599221 + L2 LINE L2 3188 3312 -1 353 269 21 35 chrX 5375268 5375409 -171598731 - L1MC5 LINE L1 -34 7927 7789 504 198 10 30 chrX 5376336 5376437 -171597703 + MER5B DNA MER1_type 13 111 -67 810 212 61 40 chrX 5376442 5376640 -171597500 - MER63A DNA MER1_type -6 204 3 384 208 0 0 chrX 5376642 5376714 -171597426 + MER5B DNA MER1_type 104 175 -3 872 196 87 6 chrX 5376726 5376790 -171597350 - MER5A DNA MER1_type 0 189 132 2056 122 24 0 chrX 5376790 5377086 -171597054 + AluSq SINE Alu 1 303 -10 872 196 87 6 chrX 5377086 5377194 -171596946 - MER5A DNA MER1_type -57 132 3 201 286 124 38 chrX 5377486 5377591 -171596549 - L2 LINE L2 -20 3293 3180 332 209 418 8 chrX 5377836 5377970 -171596170 + MER5A DNA MER1_type 1 189 0 1766 186 73 6 chrX 5378212 5378529 -171595611 + MER58B DNA MER1_type 2 339 -2 267 185 139 74 chrX 5379823 5379931 -171594209 - MLT1E3 LTR MaLR -292 332 214 1013 143 6 6 chrX 5379958 5380119 -171594021 + MER5A DNA MER1_type 4 164 -25 1250 67 93 72 chrX 5380265 5380458 -171593682 + MER107 DNA MER1_type 1 197 0 910 245 130 66 chrX 5382185 5382909 -171591231 + HsTC2a DNA Tc2 3 634 -1261 1063 235 14 27 chrX 5382909 5383130 -171591010 - MER58A DNA MER1_type -2 222 5 910 245 130 66 chrX 5383130 5383239 -171590901 + HsTC2a DNA Tc2 634 735 -4 2489 66 0 0 chrX 5383680 5383981 -171590159 + AluY SINE Alu 2 302 -9 469 284 46 35 chrX 5384257 5384454 -171589686 - MLT1J2 LTR MaLR -2 448 250 1029 194 10 20 chrX 5384457 5384658 -171589482 - MER20 DNA MER1_type -3 216 18 23067 33 1 3 chrX 5385168 5388558 -171585582 + L1PA4 LINE L1 2769 6155 0 33 0 0 0 chrX 5388570 5388603 -171585537 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chrX 5389115 5389141 -171584999 + (T)n Simple_repeat Simple_repeat 1 26 0 212 128 51 0 chrX 5389217 5389256 -171584884 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 672 210 95 91 chrX 5390928 5391145 -171582995 + MIR SINE MIR 1 221 -41 1990 153 0 0 chrX 5391145 5391440 -171582700 + AluSx SINE Alu 1 295 -17 672 210 95 91 chrX 5391440 5391474 -171582666 + MIR SINE MIR 221 253 -9 285 146 0 0 chrX 5391495 5391543 -171582597 + (CAG)n Simple_repeat Simple_repeat 1 48 0 211 224 0 0 chrX 5391643 5391692 -171582448 + (TAA)n Simple_repeat Simple_repeat 2 50 0 369 93 0 0 chrX 5392481 5392535 -171581605 + (CA)n Simple_repeat Simple_repeat 2 55 0 436 243 62 14 chrX 5393191 5393335 -171580805 + MLT1J1 LTR MaLR 1 151 -295 290 191 90 56 chrX 5393441 5393530 -171580610 + MLT1J1 LTR MaLR 349 440 -6 339 253 44 0 chrX 5393750 5393841 -171580299 + L1ME3A LINE L1 5620 5714 -456 754 210 185 20 chrX 5393844 5394165 -171579975 + L1ME3A LINE L1 5750 6122 -42 321 203 0 0 chrX 5395499 5395558 -171578582 - MER112 DNA MER1_type -183 77 19 992 241 84 125 chrX 5396200 5396360 -171577780 + MLT1L LTR MaLR 15 180 -435 369 294 119 30 chrX 5396360 5396561 -171577579 - MER20 DNA MER1_type 0 219 1 992 241 84 125 chrX 5396561 5396572 -171577568 + MLT1L LTR MaLR 180 190 -425 1253 184 4 43 chrX 5396572 5396805 -171577335 - MER58A DNA MER1_type 0 224 1 992 241 84 125 chrX 5396805 5397249 -171576891 + MLT1L LTR MaLR 190 606 -9 514 250 69 132 chrX 5397436 5397832 -171576308 + MLT1L LTR MaLR 37 506 -109 1613 189 94 3 chrX 5398538 5398845 -171575295 - MER58B DNA MER1_type -3 338 4 2765 13 0 10 chrX 5399375 5399680 -171574460 + AluYb8 SINE Alu 8 309 -9 435 236 31 50 chrX 5400150 5400311 -171573829 - L1MC4a LINE L1 -1858 5950 5793 407 260 141 7 chrX 5400704 5400879 -171573261 + L1ME4a LINE L1 5662 5853 -268 21 0 0 0 chrX 5401191 5401212 -171572928 + AT_rich Low_complexity Low_complexity 1 21 0 308 215 11 43 chrX 5401394 5401487 -171572653 - L1MC4a LINE L1 -1911 5897 5808 874 100 0 8 chrX 5401773 5401893 -171572247 - Tigger1 DNA MER2_type -1017 1401 1283 268 250 0 0 chrX 5401914 5401986 -171572154 - L1ME4a LINE L1 -3 6118 6047 16558 112 19 17 chrX 5402420 5403367 -171570773 - Tigger1 DNA MER2_type 0 2418 1474 841 108 0 0 chrX 5403367 5403478 -171570662 - HY1 scRNA scRNA -1 111 1 16558 112 19 17 chrX 5403478 5404942 -171569198 - Tigger1 DNA MER2_type -944 1474 2 507 243 51 36 chrX 5405273 5405470 -171568670 - MLT1H LTR MaLR -240 189 1 648 313 78 4 chrX 5405522 5405790 -171568350 + MLT1J1 LTR MaLR 51 338 -108 307 347 52 47 chrX 5405896 5406109 -171568031 - L2 LINE L2 -195 3077 2864 195 186 0 0 chrX 5406109 5406152 -171567988 + (TG)n Simple_repeat Simple_repeat 2 44 0 2465 77 0 7 chrX 5406212 5406522 -171567618 - AluY SINE Alu -3 308 1 768 166 108 0 chrX 5406862 5407001 -171567139 - MER58B DNA MER1_type -21 320 167 189 26 79 0 chrX 5407806 5407844 -171566296 + (TA)n Simple_repeat Simple_repeat 1 41 0 1836 167 93 0 chrX 5409056 5409368 -171564772 - MER58B DNA MER1_type 0 341 1 22 70 0 0 chrX 5413909 5413952 -171560188 + GC_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chrX 5414778 5414798 -171559342 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1131 247 21 132 chrX 5415613 5415666 -171558474 + L2 LINE L2 2644 2701 -612 402 21 0 0 chrX 5415666 5415713 -171558427 + (TG)n Simple_repeat Simple_repeat 2 48 0 1131 247 21 132 chrX 5415713 5416420 -171557720 + L2 LINE L2 2701 3313 0 188 161 0 0 chrX 5417407 5417438 -171556702 + MIR3 SINE MIR 155 185 -23 339 215 0 0 chrX 5417595 5417660 -171556480 + MIR SINE MIR 87 151 -111 1104 270 95 48 chrX 5418168 5418980 -171555160 - L2 LINE L2 0 3313 2455 981 181 0 0 chrX 5419015 5419181 -171554959 + FRAM SINE Alu 1 166 -10 825 169 0 0 chrX 5419233 5419394 -171554746 + FLAM_C SINE Alu 2 162 0 2832 273 89 32 chrX 5419416 5420546 -171553594 + L2 LINE L2 1465 2659 -655 270 285 16 57 chrX 5420698 5420821 -171553319 - MIR SINE MIR -45 217 100 227 387 51 7 chrX 5421026 5421163 -171552977 + MIR3 SINE MIR 19 161 -47 306 295 27 18 chrX 5422010 5422122 -171552018 - L2 LINE L2 0 3313 3201 335 347 67 21 chrX 5422247 5422440 -171551700 + MLT1L LTR MaLR 344 545 -70 297 0 0 0 chrX 5422468 5422501 -171551639 + (TC)n Simple_repeat Simple_repeat 2 34 0 343 276 97 64 chrX 5422761 5422907 -171551233 - MIR SINE MIR -61 147 32 2773 96 27 0 chrX 5423074 5423439 -171550701 + THE1C LTR MaLR 1 375 0 10891 110 37 34 chrX 5423439 5425015 -171549125 + THE1C-int LTR MaLR 1 1580 0 2813 109 5 5 chrX 5425015 5425390 -171548750 + THE1C LTR MaLR 1 375 0 389 325 50 0 chrX 5427707 5427827 -171546313 - L2 LINE L2 0 3272 3147 452 298 159 22 chrX 5428407 5428716 -171545424 - L2 LINE L2 -218 3054 2713 690 223 27 0 chrX 5428859 5429007 -171545133 + MER20 DNA MER1_type 68 219 0 2006 151 13 13 chrX 5429166 5429478 -171544662 + AluSx SINE Alu 1 312 0 662 293 11 0 chrX 5429605 5429779 -171544361 + MER91B DNA MER1_type 2 177 -13 460 219 161 19 chrX 5430029 5430184 -171543956 + MLT1J2 LTR MaLR 41 217 -233 689 310 57 8 chrX 5430418 5430663 -171543477 + MIR SINE MIR 5 261 -1 1605 144 89 10 chrX 5431100 5431483 -171542657 - Charlie1b DNA MER1_type -30 493 81 247 246 0 18 chrX 5431483 5431597 -171542543 + (TTA)n Simple_repeat Simple_repeat 3 114 0 311 243 10 78 chrX 5431602 5431705 -171542435 - Charlie1b DNA MER1_type -427 96 1 515 167 0 0 chrX 5432109 5432193 -171541947 - AluJ/FLAM SINE Alu -228 84 1 300 309 37 25 chrX 5432919 5433081 -171541059 - L3b LINE CR1 -318 1265 1102 457 146 11 11 chrX 5435214 5435303 -171538837 + L1PB2 LINE L1 6056 6144 -7 253 188 47 47 chrX 5435360 5435424 -171538716 - MIR SINE MIR -116 146 83 861 235 10 0 chrX 5435914 5436114 -171538026 + MER105 DNA DNA 1 202 -2 186 43 0 0 chrX 5436316 5436339 -171537801 + (GA)n Simple_repeat Simple_repeat 2 24 0 1381 153 63 0 chrX 5437126 5437348 -171536792 + AluJb SINE Alu 1 236 -76 406 300 47 47 chrX 5438757 5438821 -171535319 - MLT1K LTR MaLR -10 578 515 2064 156 111 32 chrX 5438821 5439017 -171535123 + MLT1D LTR MaLR 1 180 -325 210 37 0 0 chrX 5439017 5439044 -171535096 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 2064 156 111 32 chrX 5439044 5439315 -171534825 + MLT1D LTR MaLR 180 505 0 406 300 47 47 chrX 5439315 5439503 -171534637 - MLT1K LTR MaLR -72 516 326 519 291 90 53 chrX 5439555 5439854 -171534286 - MLT1K LTR MaLR -277 311 2 28 61 0 0 chrX 5439869 5439918 -171534222 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chrX 5439944 5439983 -171534157 + AT_rich Low_complexity Low_complexity 1 39 0 35924 50 3 102 chrX 5440032 5446866 -171527274 - L1PA5 LINE L1 -8 6146 11 227 280 0 54 chrX 5447473 5447566 -171526574 + L2 LINE L2 3184 3271 -1 650 274 52 14 chrX 5448575 5448787 -171525353 + MIR SINE MIR 40 259 -3 1950 183 34 13 chrX 5449178 5449566 -171524574 + MSTD LTR MaLR 1 396 0 241 227 30 45 chrX 5449653 5449785 -171524355 + L1ME4a LINE L1 5987 6116 -5 921 182 34 0 chrX 5449846 5450022 -171524118 + MER58A DNA MER1_type 40 221 -3 611 224 35 7 chrX 5450169 5450312 -171523828 - MIR SINE MIR 0 262 116 243 323 10 40 chrX 5451295 5451394 -171522746 + L3 LINE CR1 1015 1110 -467 322 266 32 32 chrX 5451577 5451701 -171522439 + L1ME4a LINE L1 5932 6055 -66 219 146 0 24 chrX 5451702 5451743 -171522397 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 664 301 47 55 chrX 5451828 5452213 -171521927 + L3 LINE CR1 1101 1482 -95 322 273 154 0 chrX 5453025 5453135 -171521005 + MIR SINE MIR 62 188 -74 1096 202 9 9 chrX 5453322 5453540 -171520600 - MER58A DNA MER1_type -6 218 1 519 263 60 0 chrX 5453550 5453683 -171520457 - MIR SINE MIR -114 148 8 1909 4 8 34 chrX 5454239 5454474 -171519666 - L1PA3 LINE L1 -11 6144 5916 877 208 63 10 chrX 5454646 5454853 -171519287 - MER20 DNA MER1_type -1 218 1 183 129 0 0 chrX 5455176 5455207 -171518933 + (T)n Simple_repeat Simple_repeat 1 31 0 3309 164 20 30 chrX 5455371 5456071 -171518069 + L1MB8 LINE L1 5485 6177 -1 1778 174 3 13 chrX 5456554 5456852 -171517288 - AluJo SINE Alu -11 301 7 442 369 127 14 chrX 5456852 5457269 -171516871 + L3 LINE CR1 553 1016 -561 207 315 19 0 chrX 5457380 5457434 -171516706 - L2 LINE L2 -60 3212 3158 423 339 166 11 chrX 5457549 5457826 -171516314 + L3 LINE CR1 1145 1464 -113 1235 231 72 6 chrX 5457848 5458066 -171516074 - MER58B DNA MER1_type -2079 341 94 1717 181 13 17 chrX 5458066 5458365 -171515775 - AluJo SINE Alu -14 298 1 1235 231 72 6 chrX 5458365 5458466 -171515674 - MER58B DNA MER1_type -2326 94 1 536 356 11 0 chrX 5458670 5458861 -171515279 - MIR SINE MIR -56 206 14 222 222 11 89 chrX 5459101 5459191 -171514949 + MIR SINE MIR 116 198 -64 279 246 15 15 chrX 5459683 5459748 -171514392 + L2 LINE L2 3026 3090 -182 290 306 0 0 chrX 5459948 5460020 -171514120 + MIR3 SINE MIR 120 191 -17 860 292 100 22 chrX 5460158 5460759 -171513381 + L2 LINE L2 2664 3312 -1 197 336 66 25 chrX 5461347 5461469 -171512671 + MIR SINE MIR 124 250 -12 883 232 43 5 chrX 5461621 5461832 -171512308 - MER20 DNA MER1_type 0 219 1 946 241 18 35 chrX 5461931 5462159 -171511981 + MER58A DNA MER1_type 1 224 0 594 273 19 46 chrX 5462159 5462375 -171511765 + MIR SINE MIR 17 226 -36 2844 128 14 2 chrX 5462948 5463371 -171510769 - MSTA LTR MaLR 0 428 1 1415 235 48 42 chrX 5463767 5464275 -171509865 + L1ME3A LINE L1 5266 5775 -395 954 237 67 19 chrX 5464510 5464822 -171509318 + L1ME3A LINE L1 5843 6169 -1 282 271 79 50 chrX 5465102 5465183 -171508957 - MIR3 SINE MIR -62 146 58 1592 177 84 26 chrX 5465183 5465528 -171508612 + MLT1A1 LTR MaLR 1 365 0 282 271 79 50 chrX 5465528 5465586 -171508554 - MIR3 SINE MIR -150 58 3 1465 235 132 41 chrX 5466406 5466946 -171507194 + MLT1E LTR MaLR 3 591 -2 379 300 31 0 chrX 5467273 5467433 -171506707 + MER103 DNA DNA 1 165 -1 357 62 0 0 chrX 5467515 5467563 -171506577 + (CA)n Simple_repeat Simple_repeat 1 48 0 1923 166 11 0 chrX 5467751 5468035 -171506105 - AluJb SINE Alu -21 291 5 24 0 0 0 chrX 5468052 5468076 -171506064 + AT_rich Low_complexity Low_complexity 1 24 0 960 174 0 36 chrX 5468082 5468249 -171505891 - FRAM SINE Alu -23 153 1 23 0 0 0 chrX 5468358 5468381 -171505759 + AT_rich Low_complexity Low_complexity 1 23 0 2763 75 0 17 chrX 5469175 5469536 -171504604 - THE1A LTR MaLR 0 355 1 12071 84 6 1 chrX 5469536 5471109 -171503031 - THE1A-int LTR MaLR 0 1580 1 2665 93 3 0 chrX 5471109 5471463 -171502677 - THE1A LTR MaLR 0 355 1 403 248 0 0 chrX 5473264 5473365 -171500775 + MER94 DNA DNA 2 102 -32 996 211 0 44 chrX 5474707 5474935 -171499205 + MER20 DNA MER1_type 2 219 0 1721 248 62 27 chrX 5475238 5475755 -171498385 + MLT1E LTR MaLR 58 592 -1 180 0 0 0 chrX 5475834 5475854 -171498286 + (GA)n Simple_repeat Simple_repeat 1 20 0 402 21 0 0 chrX 5477242 5477289 -171496851 + (CA)n Simple_repeat Simple_repeat 1 47 0 243 186 0 43 chrX 5477578 5477648 -171496492 + A-rich Low_complexity Low_complexity 3 69 0 1907 138 35 3 chrX 5478198 5478510 -171495630 - L1MC1 LINE L1 -23 6310 5989 234 220 61 45 chrX 5479538 5479670 -171494470 + L1P LINE L1 5255 5388 -763 1088 251 63 25 chrX 5479967 5480286 -171493854 + MER58B DNA MER1_type 1 331 -10 327 298 107 23 chrX 5480297 5480559 -171493581 + L1ME3 LINE L1 5650 5931 -235 189 74 0 0 chrX 5480596 5480623 -171493517 + (TA)n Simple_repeat Simple_repeat 2 28 0 928 188 0 0 chrX 5481384 5481538 -171492602 + FRAM SINE Alu 1 154 -22 265 295 52 69 chrX 5481892 5482065 -171492075 + MIR SINE MIR 8 177 -85 217 358 0 22 chrX 5482240 5482374 -171491766 + GA-rich Low_complexity Low_complexity 4 134 0 216 259 0 0 chrX 5482952 5483033 -171491107 + C-rich Low_complexity Low_complexity 1 81 0 424 292 8 36 chrX 5483114 5483370 -171490770 + CT-rich Low_complexity Low_complexity 1 248 0 1223 293 270 21 chrX 5483753 5485190 -171488950 + L2 LINE L2 1498 3304 -9 2398 204 8 37 chrX 5485652 5486167 -171487973 - MLT1D LTR MaLR 0 505 6 2262 111 3 0 chrX 5486303 5486631 -171487509 + AluSg SINE Alu 1 329 0 2231 106 3 10 chrX 5486849 5487160 -171486980 + AluSg SINE Alu 1 309 -1 221 211 39 0 chrX 5489778 5489830 -171484310 + MIR SINE MIR 196 249 -13 303 281 58 22 chrX 5490112 5490251 -171483889 + L1M4 LINE L1 3371 3514 -2632 875 196 6 39 chrX 5490271 5490450 -171483690 - AluJo SINE Alu -35 277 105 502 278 70 54 chrX 5490514 5490618 -171483522 + L1M4 LINE L1 3875 3976 -2170 213 65 0 0 chrX 5490618 5490649 -171483491 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1732 156 7 4 chrX 5490657 5490926 -171483214 - AluJo SINE Alu -37 275 6 502 278 70 54 chrX 5490926 5491309 -171482831 + L1M4 LINE L1 3982 4379 -1767 777 153 0 0 chrX 5491409 5491533 -171482607 + AluSg/x SINE Alu 181 304 -8 22 0 0 0 chrX 5491576 5491598 -171482542 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 5491978 5491999 -171482141 + AT_rich Low_complexity Low_complexity 1 21 0 3167 123 74 2 chrX 5492536 5493047 -171481093 + MER34C LTR ERV1 35 582 -3 2130 112 8 36 chrX 5493561 5493917 -171480223 + L1PA16 LINE L1 5312 5657 -509 658 88 39 0 chrX 5493949 5494051 -171480089 + MER39B LTR ERV1 90 195 -458 3012 120 37 8 chrX 5494072 5494556 -171479584 + L1PA16 LINE L1 5665 6162 -4 287 323 125 15 chrX 5494558 5494951 -171479189 + L1M4 LINE L1 2329 2764 -3382 1026 166 14 54 chrX 5495062 5495285 -171478855 - MER20 DNA MER1_type -4 215 2 38 61 0 0 chrX 5495319 5495385 -171478755 + AT_rich Low_complexity Low_complexity 1 66 0 1417 228 57 54 chrX 5495543 5496003 -171478137 + LTR48B LTR ERV1 1 461 -183 604 182 91 26 chrX 5496302 5496456 -171477684 + MLT1E1 LTR MaLR 490 653 -1 400 286 63 23 chrX 5497136 5497311 -171476829 + L1MC4a LINE L1 5698 5879 -1929 2128 127 104 12 chrX 5497342 5497884 -171476256 + MER39B LTR ERV1 1 653 0 23 0 0 0 chrX 5497887 5497910 -171476230 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chrX 5497962 5497992 -171476148 + AT_rich Low_complexity Low_complexity 1 30 0 2358 175 47 2 chrX 5498366 5498772 -171475368 - MSTB LTR MaLR -2 424 1 661 150 83 0 chrX 5498883 5499016 -171475124 - L1MA9 LINE L1 -5 6307 6164 633 119 99 0 chrX 5499092 5499193 -171474947 + HY1 scRNA scRNA 1 111 -1 25 65 0 0 chrX 5499193 5499239 -171474901 + AT_rich Low_complexity Low_complexity 1 46 0 241 216 117 53 chrX 5499385 5499556 -171474584 - L2 LINE L2 -85 3228 3047 1224 164 127 55 chrX 5499940 5500294 -171473846 + MER39 LTR ERV1 336 565 0 231 36 0 0 chrX 5500485 5500513 -171473627 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1073 54 11 38 chrX 5500513 5500697 -171473443 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1896 135 0 4 chrX 5500697 5500963 -171473177 - AluSx SINE Alu -47 265 1 27 0 0 0 chrX 5501997 5502024 -171472116 + AT_rich Low_complexity Low_complexity 1 27 0 207 195 24 0 chrX 5502244 5502285 -171471855 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 188 157 0 157 chrX 5502300 5502351 -171471789 + MIR3 SINE MIR 131 173 -35 184 297 47 31 chrX 5502317 5502381 -171471759 + L3b LINE CR1 1519 1583 0 * 811 294 66 28 chrX 5502907 5503301 -171470839 - L1ME3A LINE L1 -222 5948 5540 277 125 31 0 chrX 5503383 5503447 -171470693 + L1M4 LINE L1 3155 3220 -2926 5563 121 24 20 chrX 5503464 5504418 -171469722 - Tigger3b DNA MER2_type 0 1231 274 586 165 0 0 chrX 5504416 5504507 -171469633 - Tigger3b DNA MER2_type -1129 102 12 * 5729 158 25 10 chrX 5504508 5506520 -171467620 + L1PA16 LINE L1 4126 6157 -9 381 266 26 13 chrX 5506568 5506722 -171467418 - L1M4 LINE L1 -3097 3049 2894 237 266 0 0 chrX 5506818 5506961 -171467179 + (TA)n Simple_repeat Simple_repeat 2 144 0 3275 189 132 12 chrX 5506969 5507726 -171466414 + MER21B LTR ERV1 9 862 -1 676 287 11 63 chrX 5508315 5508583 -171465557 + L1MEd LINE L1 338 591 -5528 257 266 147 28 chrX 5508614 5508723 -171465417 + L1MEd LINE L1 540 661 -5458 1612 193 40 6 chrX 5508733 5509060 -171465080 - MER58B DNA MER1_type -2 339 2 180 261 0 46 chrX 5509406 5509471 -171464669 + L2 LINE L2 2999 3060 -212 190 256 23 0 chrX 5510455 5510498 -171463642 + MIR3 SINE MIR 151 194 -14 404 280 46 84 chrX 5510812 5511158 -171462982 + L1ME1 LINE L1 20 662 -6193 283 302 69 31 chrX 5511364 5511523 -171462617 + L1ME1 LINE L1 1029 1193 -5662 3067 230 107 48 chrX 5511606 5513190 -171460950 + L1ME1 LINE L1 1226 2715 -4242 1844 91 116 11 chrX 5513190 5513465 -171460675 + AluYa8 SINE Alu 1 304 -6 3067 230 107 48 chrX 5513465 5514019 -171460121 + L1ME1 LINE L1 2715 3235 -3722 2231 119 3 0 chrX 5514019 5514331 -171459809 - AluSp SINE Alu 0 313 1 3067 230 107 48 chrX 5514331 5514706 -171459434 + L1ME1 LINE L1 3235 3586 -3371 980 233 3 110 chrX 5514706 5515041 -171459099 + AluJb SINE Alu 1 299 -3 3067 230 107 48 chrX 5515041 5515334 -171458806 + L1ME1 LINE L1 3586 4223 -2734 1011 192 64 18 chrX 5515342 5515623 -171458517 + L1ME1 LINE L1 5809 6102 -855 2418 211 32 69 chrX 5515652 5516092 -171458048 + L1ME1 LINE L1 6231 6637 -340 2317 108 6 6 chrX 5516092 5516444 -171457696 + L1PA13 LINE L1 5811 6162 -1 2418 211 32 69 chrX 5516444 5516715 -171457425 + L1ME1 LINE L1 6637 6916 -61 1155 213 20 38 chrX 5517652 5517995 -171456145 - L1MC4 LINE L1 -442 7600 7264 2321 78 3 0 chrX 5520022 5520350 -171453790 + AluSp SINE Alu 1 329 0 449 323 200 61 chrX 5520366 5522288 -171451852 + L2 LINE L2 558 2746 -568 877 185 6 39 chrX 5522330 5522508 -171451632 - MER20 DNA MER1_type -47 172 1 206 264 0 0 chrX 5523993 5524046 -171450094 - MIR SINE MIR -107 155 103 1158 221 19 11 chrX 5524067 5524330 -171449810 + MLT1E1 LTR MaLR 1 265 -389 6961 139 24 3 chrX 5524362 5525709 -171448431 + L1MC1 LINE L1 4964 6331 -2 933 236 138 18 chrX 5525753 5526035 -171448105 + MLT1E3 LTR MaLR 232 624 0 593 337 24 20 chrX 5526845 5527097 -171447043 + L3 LINE CR1 1323 1575 -2 257 281 309 0 chrX 5527820 5527998 -171446142 - L2 LINE L2 -703 2611 2379 1659 232 64 50 chrX 5528010 5528582 -171445558 - MLT1F1 LTR MaLR 0 567 1 798 294 47 60 chrX 5528582 5529031 -171445109 - L2 LINE L2 -934 2380 1938 401 252 11 19 chrX 5529036 5529231 -171444909 + L1ME3A LINE L1 5703 5882 -288 357 239 0 0 chrX 5529615 5529682 -171444458 + MIR SINE MIR 77 143 -65 226 308 0 0 chrX 5529683 5529748 -171444392 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 211 337 11 11 chrX 5529711 5529800 -171444340 + (CATA)n Simple_repeat Simple_repeat 3 91 0 * 531 273 129 39 chrX 5530361 5530647 -171443493 - L2 LINE L2 -6 3307 2996 338 250 51 80 chrX 5530619 5530683 -171443457 - L2 LINE L2 -3119 195 131 * 1878 202 3 6 chrX 5530683 5531049 -171443091 - MLT1A1 LTR MaLR 0 365 1 338 250 51 80 chrX 5531049 5531160 -171442980 - L2 LINE L2 -3183 131 25 214 281 24 12 chrX 5531758 5531840 -171442300 - MIR SINE MIR 0 262 180 207 330 143 9 chrX 5531841 5531953 -171442187 - L2 LINE L2 -5 3267 3141 * 518 253 24 59 chrX 5531945 5532115 -171442025 - MIR3 SINE MIR -29 179 16 404 316 87 48 chrX 5533092 5533298 -171440842 + L3 LINE CR1 407 620 -957 1020 272 69 67 chrX 5533340 5533745 -171440395 + MLT1J2 LTR MaLR 37 442 -8 192 204 0 68 chrX 5533759 5533803 -171440337 - L2 LINE L2 -31 3241 3201 1035 239 27 19 chrX 5533912 5534172 -171439968 + MIR SINE MIR 1 262 0 227 31 31 0 chrX 5534593 5534625 -171439515 + (GA)n Simple_repeat Simple_repeat 2 34 0 865 275 48 13 chrX 5534802 5535118 -171439022 + MER46C DNA MER2_type 3 329 -9 1883 161 30 91 chrX 5535126 5535304 -171438836 + MLT1C LTR MaLR 1 188 -279 2252 106 3 3 chrX 5535304 5535615 -171438525 + AluSq SINE Alu 3 313 0 1883 161 30 91 chrX 5535615 5535933 -171438207 + MLT1C LTR MaLR 188 467 0 259 255 77 57 chrX 5538001 5538208 -171435932 - MLT1L LTR MaLR -24 487 303 307 238 0 48 chrX 5538336 5538420 -171435720 - MLT1J LTR MaLR -333 178 99 180 314 118 0 chrX 5538653 5538704 -171435436 - L2 LINE L2 -255 3017 2961 183 42 0 0 chrX 5539298 5539322 -171434818 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chrX 5540006 5540034 -171434106 + AT_rich Low_complexity Low_complexity 1 28 0 1422 169 0 50 chrX 5541568 5541820 -171432320 + L1M4 LINE L1 3934 4170 -1976 2470 58 7 0 chrX 5541820 5542112 -171432028 + AluSc SINE Alu 1 294 -15 1422 169 0 50 chrX 5542112 5542161 -171431979 + L1M4 LINE L1 4170 4220 -1926 215 351 37 0 chrX 5542277 5542411 -171431729 - MIR SINE MIR -73 189 51 950 156 104 16 chrX 5542471 5542663 -171431477 + MER3 DNA MER1_type 1 209 0 195 354 55 37 chrX 5543064 5543228 -171430912 + L2 LINE L2 2890 3056 -216 1023 218 5 14 chrX 5543329 5543549 -171430591 + MER58A DNA MER1_type 4 221 -3 24 32 0 0 chrX 5543588 5543619 -171430521 + AT_rich Low_complexity Low_complexity 1 31 0 358 238 113 39 chrX 5543790 5543940 -171430200 - MIR SINE MIR -67 141 5 22 80 0 0 chrX 5544104 5544154 -171429986 + AT_rich Low_complexity Low_complexity 1 50 0 985 91 51 23 chrX 5544710 5544886 -171429254 - L1MA9 LINE L1 -2 6310 6130 322 274 0 89 chrX 5545683 5545829 -171428311 + MIR SINE MIR 34 166 -96 704 276 50 50 chrX 5546589 5547060 -171427080 - MLT1G1 LTR MaLR 0 595 1 934 193 6 17 chrX 5548672 5548853 -171425287 + MER5A DNA MER1_type 10 188 -1 215 284 68 27 chrX 5549912 5549986 -171424154 + MER5B DNA MER1_type 99 175 -3 1790 165 32 0 chrX 5550314 5550593 -171423547 + AluSx SINE Alu 1 288 -24 309 26 0 0 chrX 5550594 5550632 -171423508 + (CA)n Simple_repeat Simple_repeat 2 39 0 277 310 85 16 chrX 5550662 5550791 -171423349 - MIR SINE MIR -30 232 95 271 338 25 0 chrX 5551212 5551292 -171422848 + L2 LINE L2 3191 3272 0 488 211 32 0 chrX 5551346 5551441 -171422699 - L2 LINE L2 -1 3312 3215 691 293 18 13 chrX 5552843 5553072 -171421068 - MER46C DNA MER2_type -1 337 108 234 329 52 99 chrX 5553227 5553440 -171420700 - L2 LINE L2 -154 3118 2916 328 248 69 10 chrX 5556190 5556291 -171417849 + MLT1I LTR MaLR 39 145 -264 340 192 0 140 chrX 5556454 5556610 -171417530 + MLT1G1 LTR MaLR 428 504 -1 185 405 47 0 chrX 5556718 5556866 -171417274 + L2 LINE L2 2608 2762 -552 234 143 71 0 chrX 5557308 5557320 -171416820 - MIR SINE MIR -2 260 216 242 67 0 0 chrX 5557320 5557350 -171416790 - L2 LINE L2 -23 3290 3261 22 56 0 0 chrX 5558364 5558400 -171415740 + AT_rich Low_complexity Low_complexity 1 36 0 1138 160 23 23 chrX 5559753 5559972 -171414168 - MER20 DNA MER1_type 0 219 1 222 37 0 0 chrX 5560423 5560450 -171413690 + (TTTTTG)n Simple_repeat Simple_repeat 6 32 0 1042 208 19 14 chrX 5560485 5560701 -171413439 + MER20 DNA MER1_type 1 217 -2 243 79 0 0 chrX 5560997 5561035 -171413105 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1403 292 56 44 chrX 5562731 5563317 -171410823 + MLT1E LTR MaLR 1 593 0 3686 188 18 5 chrX 5563533 5564267 -171409873 - L1MB5 LINE L1 0 6174 5432 12847 142 12 26 chrX 5564267 5567731 -171406409 - L1MA2 LINE L1 -42 7681 4269 7098 169 12 1 chrX 5567727 5568866 -171405274 - L1MA2 LINE L1 -5713 1852 701 * 1114 175 30 3 chrX 5568859 5569281 -171404859 - L1MA2 LINE L1 -648 6949 13 * 6558 94 19 48 chrX 5569281 5570269 -171403871 + HSMAR2 DNA Mariner 343 1302 0 190 295 84 105 chrX 5570274 5570369 -171403771 - L2 LINE L2 -38 3234 3142 915 287 86 51 chrX 5570441 5571954 -171402186 + L1ME3A LINE L1 58 1657 -4653 413 266 84 58 chrX 5572491 5572837 -171401303 + L1ME3A LINE L1 2313 2667 -3462 760 248 76 14 chrX 5572891 5573101 -171401039 - MER58A DNA MER1_type -1 223 1 366 239 98 43 chrX 5573116 5573279 -171400861 + L1ME3A LINE L1 2788 2959 -3170 445 246 0 9 chrX 5573286 5573396 -171400744 + L1ME3A LINE L1 6062 6170 0 443 269 103 34 chrX 5573410 5573848 -171400292 + L1ME3A LINE L1 2955 3422 -2707 22 35 0 0 chrX 5573854 5573883 -171400257 + AT_rich Low_complexity Low_complexity 1 29 0 839 281 84 5 chrX 5574021 5574621 -171399519 + L1ME3A LINE L1 4982 5629 -516 356 263 45 57 chrX 5574719 5574966 -171399174 + L1ME3A LINE L1 5820 6063 -90 2770 112 16 66 chrX 5575601 5575669 -171398471 + MER4E LTR ERV1 1 71 -695 2539 78 0 0 chrX 5575669 5575978 -171398162 - AluY SINE Alu -2 309 1 2770 112 16 66 chrX 5575978 5576536 -171397604 + MER4E LTR ERV1 71 766 0 271 291 146 46 chrX 5578532 5578683 -171395457 - MIR SINE MIR -13 249 84 2786 137 26 12 chrX 5579462 5579887 -171394253 - MSTB1 LTR MaLR 0 432 2 377 215 271 14 chrX 5580456 5580600 -171393540 - MER5A DNA MER1_type 0 189 9 521 287 118 21 chrX 5581249 5581486 -171392654 - MIR SINE MIR -2 260 1 339 255 0 11 chrX 5581804 5581898 -171392242 - MLT1K LTR MaLR -6 582 490 350 224 75 60 chrX 5582118 5582252 -171391888 + MER104 DNA Tc2 1 136 -44 355 268 49 32 chrX 5582466 5582589 -171391551 - L2 LINE L2 0 3272 3148 496 237 42 17 chrX 5585063 5585181 -171388959 + MIR SINE MIR 1 121 -141 526 103 0 39 chrX 5585181 5585259 -171388881 + LTR32 LTR ERVL 13 87 -384 * 2669 166 29 5 chrX 5585240 5585686 -171388454 + LTR32 LTR ERVL 15 471 0 189 0 0 0 chrX 5586240 5586261 -171387879 + (A)n Simple_repeat Simple_repeat 1 21 0 207 0 0 0 chrX 5586261 5586284 -171387856 + (CA)n Simple_repeat Simple_repeat 2 24 0 786 129 0 0 chrX 5586790 5586891 -171387249 + FLAM_A SINE Alu 22 122 -20 261 0 0 0 chrX 5587467 5587496 -171386644 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2006 192 6 3 chrX 5587502 5587851 -171386289 - MLT1A1 LTR MaLR -15 350 1 2358 171 47 64 chrX 5588792 5589306 -171384834 + MLT1D LTR MaLR 1 505 0 296 211 33 125 chrX 5589548 5589575 -171384565 - MER5B DNA MER1_type -37 141 113 2087 73 59 4 chrX 5589575 5589870 -171384270 + AluY SINE Alu 1 311 0 296 211 33 125 chrX 5589870 5589994 -171384146 - MER5B DNA MER1_type -65 113 4 215 301 12 12 chrX 5590060 5590143 -171383997 + MIR3 SINE MIR 123 205 -3 949 205 82 45 chrX 5591162 5591430 -171382710 + LTR50 LTR ERVL 1 278 -517 898 212 0 22 chrX 5591492 5591671 -171382469 + MLT1A1 LTR MaLR 1 175 -190 312 244 39 13 chrX 5591709 5591787 -171382353 + MLT1A1 LTR MaLR 167 246 -119 * 585 139 5 9 chrX 5591780 5591877 -171382263 - MLT1A1 LTR MaLR -26 341 253 238 204 0 0 chrX 5591872 5591916 -171382224 + MLT1A1 LTR MaLR 322 365 0 * 568 216 82 69 chrX 5591917 5592148 -171381992 + LTR50 LTR ERVL 526 759 -36 4730 123 44 20 chrX 5594159 5594864 -171379276 + MER72 LTR ERV1 1 722 0 1467 120 113 22 chrX 5595304 5595711 -171378429 + LTR54 LTR ERV1 1 510 0 188 333 67 0 chrX 5595851 5595926 -171378214 - MER5A DNA MER1_type -73 116 37 * 266 310 81 0 chrX 5595861 5595948 -171378192 + MER5A DNA MER1_type 96 189 0 885 191 85 50 chrX 5596180 5596462 -171377678 + LTR37A LTR ERV1 3 294 -132 261 0 0 0 chrX 5596464 5596493 -171377647 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1424 150 4 34 chrX 5596507 5596741 -171377399 - AluJo SINE Alu -83 229 3 649 131 29 36 chrX 5596751 5596888 -171377252 + LTR37A LTR ERV1 291 426 0 2072 49 46 11 chrX 5598248 5598511 -171375629 - AluY SINE Alu -1 310 39 216 0 0 0 chrX 5598511 5598535 -171375605 + (CATA)n Simple_repeat Simple_repeat 4 27 0 790 185 0 22 chrX 5598538 5598673 -171375467 - FLAM_A SINE Alu -1 132 1 2046 119 53 87 chrX 5598703 5599081 -171375059 + MLT1A1 LTR MaLR 1 365 0 1206 177 22 26 chrX 5599994 5600226 -171373914 + MER92B LTR ERV1 34 264 -372 1111 169 86 79 chrX 5600259 5600537 -171373603 + MER92B LTR ERV1 357 636 0 669 236 91 0 chrX 5601034 5601199 -171372941 - MER5A DNA MER1_type 0 189 10 298 157 0 86 chrX 5601883 5601953 -171372187 + L1MB7 LINE L1 6087 6150 -34 1885 155 0 7 chrX 5601970 5602261 -171371879 - AluJb SINE Alu -17 295 7 5754 97 10 4 chrX 5602261 5602929 -171371211 - L1PA13 LINE L1 -5 6158 5483 2330 118 0 3 chrX 5602929 5603243 -171370897 - AluSq SINE Alu 0 313 1 5754 97 10 4 chrX 5603243 5603371 -171370769 - L1PA13 LINE L1 -680 5483 5357 270 105 193 0 chrX 5603361 5603418 -171370722 + L1MB7 LINE L1 6117 6184 0 * 1371 166 43 22 chrX 5603446 5603602 -171370538 + L1MA9 LINE L1 5995 6146 -166 180 0 0 0 chrX 5603602 5603622 -171370518 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1371 166 43 22 chrX 5603622 5603651 -171370489 + L1MA9 LINE L1 6146 6173 -139 2221 137 24 34 chrX 5603651 5604030 -171370110 - THE1C LTR MaLR 0 375 1 1371 166 43 22 chrX 5604030 5604120 -171370020 + L1MA9 LINE L1 6173 6277 -35 226 211 0 0 chrX 5604425 5604463 -171369677 + (CA)n Simple_repeat Simple_repeat 2 39 0 26 0 0 0 chrX 5605183 5605209 -171368931 + AT_rich Low_complexity Low_complexity 1 26 0 1696 202 65 28 chrX 5605471 5605823 -171368317 - MLT1A1 LTR MaLR 0 365 1 2413 78 3 13 chrX 5605908 5606214 -171367926 - AluSp SINE Alu -10 303 1 229 286 214 10 chrX 5606531 5606629 -171367511 - L2 LINE L2 -5 3267 3150 407 205 26 0 chrX 5606741 5606819 -171367321 - MER46C DNA MER2_type -1 337 258 1096 243 140 34 chrX 5606832 5606948 -171367192 - MLT1I LTR MaLR 0 409 307 3273 173 12 12 chrX 5606948 5607463 -171366677 - MLT2B2 LTR ERVL 0 515 1 1096 243 140 34 chrX 5607463 5607704 -171366436 - MLT1I LTR MaLR -102 307 14 538 271 59 25 chrX 5607718 5607954 -171366186 - MER46C DNA MER2_type -94 244 1 638 212 33 54 chrX 5608076 5608133 -171366007 + MIR SINE MIR 45 102 -160 2668 157 49 2 chrX 5608133 5608540 -171365600 + MSTB LTR MaLR 1 426 0 638 212 33 54 chrX 5608540 5608666 -171365474 + MIR SINE MIR 102 224 -38 698 259 24 0 chrX 5608882 5609052 -171365088 - MER5B DNA MER1_type -4 174 1 375 236 99 43 chrX 5609734 5609895 -171364245 + HAL1 LINE L1 5 174 -2333 804 185 0 101 chrX 5609912 5610101 -171364039 + MER58B DNA MER1_type 172 341 0 505 248 8 8 chrX 5610111 5610232 -171363908 + HAL1 LINE L1 268 388 -2119 1691 171 27 24 chrX 5610299 5610627 -171363513 + MSTD LTR MaLR 17 345 -51 21 36 0 0 chrX 5610627 5610655 -171363485 + AT_rich Low_complexity Low_complexity 1 28 0 1070 172 32 93 chrX 5611047 5611326 -171362814 + L1MB5 LINE L1 5913 6174 0 944 106 0 57 chrX 5611645 5611786 -171362354 + FLAM_A SINE Alu 1 133 0 44127 36 21 2 chrX 5612704 5618930 -171355210 + L1HS LINE L1 1 6155 0 486 314 0 0 chrX 5619211 5619329 -171354811 - L2 LINE L2 -2 3270 3153 432 214 298 35 chrX 5620978 5621267 -171352873 - L2 LINE L2 -14 3299 2935 202 222 0 22 chrX 5622157 5622202 -171351938 - L2 LINE L2 0 3272 3229 1085 268 104 35 chrX 5622271 5622779 -171351361 + MLT1H1 LTR MaLR 6 548 -7 920 267 123 35 chrX 5623332 5623755 -171350385 - MLT1C LTR MaLR -7 460 1 2449 91 0 0 chrX 5623884 5624193 -171349947 - AluSx SINE Alu -3 309 1 266 303 42 35 chrX 5624194 5624336 -171349804 + L2 LINE L2 2942 3084 -188 21601 165 44 11 chrX 5624750 5625451 -171348689 - L1PA13 LINE L1 0 6814 6138 2541 97 58 17 chrX 5625451 5625811 -171348329 + THE1C LTR MaLR 1 375 0 21601 165 44 11 chrX 5625811 5631515 -171342625 - L1PA13 LINE L1 -676 6138 132 2721 94 22 2 chrX 5631516 5631922 -171342218 + MSTA LTR MaLR 15 428 0 272 271 31 10 chrX 5631922 5632018 -171342122 + MLT1J1 LTR MaLR 83 180 -266 684 264 65 55 chrX 5632181 5632473 -171341667 - MLT1I LTR MaLR 0 409 115 2031 158 31 23 chrX 5632509 5632896 -171341244 + MLT1B LTR MaLR 1 390 0 187 311 243 0 chrX 5633327 5633430 -171340710 + MIR SINE MIR 129 256 -6 572 242 25 13 chrX 5634907 5635064 -171339076 + MER20 DNA MER1_type 1 159 -60 2338 96 7 0 chrX 5635581 5635883 -171338257 - AluSx SINE Alu -8 304 1 4952 130 19 5 chrX 5636304 5637141 -171336999 - L1PA16 LINE L1 -1 6165 5317 423 337 163 22 chrX 5637644 5638205 -171335935 + L2 LINE L2 2460 3086 -186 840 265 51 9 chrX 5638245 5638460 -171335680 - MIR SINE MIR -8 254 31 1081 154 72 0 chrX 5638481 5638676 -171335464 + MER3 DNA MER1_type 1 209 0 225 270 111 0 chrX 5639654 5639717 -171334423 + Charlie8 DNA MER1_type 1 70 -2347 236 186 0 27 chrX 5639767 5639850 -171334290 + Charlie8 DNA MER1_type 1347 2415 -2 204 40 0 0 chrX 5639899 5639924 -171334216 + (A)n Simple_repeat Simple_repeat 1 25 0 313 281 131 44 chrX 5640734 5640894 -171333246 - MER5B DNA MER1_type 0 178 5 284 276 46 79 chrX 5641120 5641272 -171332868 + MIR SINE MIR 20 166 -96 1080 178 89 0 chrX 5642963 5643165 -171330975 + MER58A DNA MER1_type 1 220 -4 1854 159 21 7 chrX 5643490 5643780 -171330360 + AluSx SINE Alu 1 294 -18 3469 235 57 13 chrX 5644062 5645336 -171328804 + L1M4 LINE L1 2512 3842 -2304 261 273 77 16 chrX 5645350 5645533 -171328607 + L1M4 LINE L1 16 209 -6333 445 300 114 71 chrX 5645804 5646154 -171327986 + L1M4 LINE L1 542 906 -5636 274 301 0 12 chrX 5646159 5646242 -171327898 + GA-rich Low_complexity Low_complexity 1 82 0 544 154 0 108 chrX 5646371 5646501 -171327639 - L1ME LINE L1 -621 5543 5428 186 224 0 41 chrX 5646519 5646568 -171327572 + L2 LINE L2 3262 3308 -5 2260 129 0 0 chrX 5646624 5646926 -171327214 + AluSx SINE Alu 1 302 -10 615 325 48 0 chrX 5647227 5647436 -171326704 - MIR SINE MIR -31 231 13 30 27 0 0 chrX 5647878 5647915 -171326225 + AT_rich Low_complexity Low_complexity 1 37 0 1266 160 33 0 chrX 5650510 5650722 -171323418 - MER20 DNA MER1_type 0 219 1 2239 34 4 0 chrX 5651431 5651695 -171322445 + AluY SINE Alu 41 305 -6 199 182 0 159 chrX 5652239 5652327 -171321813 - L2 LINE L2 -69 3244 3171 1375 114 0 92 chrX 5652932 5653115 -171321025 + MER2 DNA MER2_type 20 172 -173 1804 158 7 3 chrX 5653115 5653407 -171320733 + AluJb SINE Alu 1 293 -19 1375 114 0 92 chrX 5653407 5653495 -171320645 + MER2 DNA MER2_type 172 266 -79 962 128 7 0 chrX 5653497 5653645 -171320495 - AluSp/q SINE Alu -8 305 157 2040 187 94 73 chrX 5653645 5654410 -171319730 - L1M4 LINE L1 -1313 4833 4053 1131 147 1 5 chrX 5654475 5654696 -171319444 - L1M3 LINE L1 -524 5656 5479 306 260 52 0 chrX 5655550 5655627 -171318513 - L2 LINE L2 -2 3311 3231 570 153 90 45 chrX 5655949 5656126 -171318014 - MER53 DNA DNA -4 185 1 419 137 14 0 chrX 5656223 5656296 -171317844 - LTR16C LTR ERVL -1 490 417 277 361 33 0 chrX 5656360 5656482 -171317658 - LTR16C LTR ERVL -212 279 154 337 321 55 0 chrX 5656669 5656778 -171317362 - MIR3 SINE MIR -7 201 87 251 254 17 0 chrX 5657401 5657460 -171316680 + L2 LINE L2 3208 3267 -5 974 139 11 0 chrX 5657965 5658145 -171315995 - L1MA7 LINE L1 -2 6289 6108 308 283 40 20 chrX 5658491 5658590 -171315550 - MIR3 SINE MIR -17 191 91 408 139 14 14 chrX 5658593 5658665 -171315475 - MER58B DNA MER1_type -1 340 269 263 374 176 4 chrX 5658822 5659060 -171315080 - L2 LINE L2 -217 3096 2818 1232 254 100 17 chrX 5659138 5659606 -171314534 + Charlie7 DNA MER1_type 44 550 -2062 226 208 195 0 chrX 5659702 5659779 -171314361 + MER112 DNA MER1_type 73 164 -96 918 216 39 26 chrX 5659849 5660159 -171313981 + Charlie7 DNA MER1_type 548 861 -1751 806 132 66 60 chrX 5660467 5660649 -171313491 + LTR54 LTR ERV1 1 183 -327 883 183 28 5 chrX 5660666 5660879 -171313261 + LTR54 LTR ERV1 293 510 0 450 353 63 9 chrX 5661104 5661325 -171312815 + MIR SINE MIR 15 247 -15 3067 27 0 64 chrX 5663412 5663820 -171310320 + L1PA4 LINE L1 5770 6151 -4 198 0 0 0 chrX 5663836 5663858 -171310282 + (A)n Simple_repeat Simple_repeat 1 22 0 204 40 0 0 chrX 5663962 5663987 -171310153 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 316 335 138 12 chrX 5664061 5664315 -171309825 - LTR16B LTR ERVL -177 287 2 2699 107 70 7 chrX 5664612 5665015 -171309125 + MSTA LTR MaLR 1 428 0 27 49 0 0 chrX 5665787 5665828 -171308312 + AT_rich Low_complexity Low_complexity 1 41 0 248 0 31 0 chrX 5667064 5667096 -171307044 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chrX 5667637 5667660 -171306480 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chrX 5668034 5668069 -171306071 + AT_rich Low_complexity Low_complexity 1 35 0 13086 163 17 12 chrX 5668107 5670535 -171303605 - L1PA13 LINE L1 -5 6158 3744 1904 145 83 14 chrX 5670535 5670886 -171303254 + THE1C LTR MaLR 1 375 0 10314 99 30 48 chrX 5670886 5672495 -171301645 + THE1C-int LTR MaLR 1 1580 0 2110 133 50 8 chrX 5672495 5672855 -171301285 + THE1C LTR MaLR 1 375 0 13086 163 17 12 chrX 5672855 5673691 -171300449 - L1PA13 LINE L1 -2418 3745 2870 3551 207 59 81 chrX 5673793 5674551 -171299589 + L1ME1 LINE L1 4175 4948 -1218 185 0 40 0 chrX 5674551 5674576 -171299564 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 3551 207 59 81 chrX 5674576 5675794 -171298346 + L1ME1 LINE L1 4948 6099 -67 218 291 18 0 chrX 5676690 5676745 -171297395 + MIR3 SINE MIR 135 190 -18 247 303 134 25 chrX 5677621 5677740 -171296400 + L2 LINE L2 3136 3267 -5 420 211 119 9 chrX 5677790 5677899 -171296241 + MIR SINE MIR 115 235 -27 229 200 0 0 chrX 5677869 5677904 -171296236 + L2 LINE L2 3210 3244 -28 * 700 274 116 34 chrX 5678058 5678412 -171295728 - MER68 LTR ERV1 0 562 180 272 210 16 0 chrX 5678468 5678530 -171295610 - MER68 LTR ERV1 -499 63 1 233 247 22 45 chrX 5678625 5678714 -171295426 + GA-rich Low_complexity Low_complexity 3 89 0 2763 184 24 11 chrX 5679378 5679999 -171294141 - L1P LINE L1 -3195 2951 2323 377 254 0 9 chrX 5680008 5680118 -171294022 + L1M4 LINE L1 2685 2793 -3353 921 138 0 0 chrX 5680120 5680258 -171293882 - AluJb SINE Alu 0 312 175 22 35 0 0 chrX 5680625 5680654 -171293486 + AT_rich Low_complexity Low_complexity 1 29 0 412 246 87 61 chrX 5681274 5681538 -171292602 + L1M4b LINE L1 5 275 -6584 5771 182 25 23 chrX 5681614 5683757 -171290383 - L1MB2 LINE L1 -7 6164 4019 234 209 60 0 chrX 5684262 5684329 -171289811 + GA-rich Low_complexity Low_complexity 3 73 0 1517 218 45 102 chrX 5684437 5684497 -171289643 + L1M4b LINE L1 1292 1354 -5605 1698 194 28 14 chrX 5684497 5684857 -171289283 + MLT1A1 LTR MaLR 1 365 0 1517 218 45 102 chrX 5684857 5685802 -171288338 + L1M4b LINE L1 1354 2231 -4728 2285 101 0 0 chrX 5685805 5686136 -171288004 + AluY SINE Alu 1 331 0 413 269 192 0 chrX 5686153 5686361 -171287779 + L1ME1 LINE L1 5914 6161 -5 215 346 68 45 chrX 5686494 5686627 -171287513 + L2 LINE L2 3121 3256 -16 893 236 116 95 chrX 5686776 5687335 -171286805 - MLT1L LTR MaLR -44 571 1 1710 176 10 10 chrX 5687940 5688241 -171285899 + AluJo SINE Alu 1 301 -11 588 302 80 9 chrX 5688960 5689185 -171284955 + L2 LINE L2 2418 2658 -656 902 188 29 86 chrX 5689364 5689796 -171284344 + MLT1A2 LTR MaLR 2 374 0 5936 81 19 17 chrX 5689931 5690913 -171283227 + L1PB2 LINE L1 5164 6147 -4 16419 26 0 0 chrX 5692035 5694750 -171279390 + L1PA3 LINE L1 3441 6155 0 26 30 0 0 chrX 5694750 5694783 -171279357 + AT_rich Low_complexity Low_complexity 1 33 0 247 236 16 87 chrX 5694817 5694944 -171279196 - L1M4b LINE L1 -5477 1382 1265 5799 103 4 52 chrX 5695118 5696132 -171278008 - L1P LINE L1 -1518 4628 3664 484 246 35 123 chrX 5696201 5696399 -171277741 - L1M4 LINE L1 -4424 2401 2187 1313 228 54 7 chrX 5696399 5696697 -171277443 - AluJo SINE Alu 0 312 1 484 246 35 123 chrX 5696697 5696821 -171277319 - L1M4 LINE L1 -4638 2187 2130 2004 137 0 44 chrX 5696821 5697142 -171276998 - AluSx SINE Alu -5 307 1 484 246 35 123 chrX 5697142 5697282 -171276858 - L1M4 LINE L1 -4695 2130 1979 335 241 0 0 chrX 5697283 5697366 -171276774 + MLT2B2 LTR ERVL 1 83 -432 235 146 0 0 chrX 5697358 5697399 -171276741 + MLT2B1 LTR ERVL 473 513 -7 * 1177 258 90 16 chrX 5697402 5698061 -171276079 - L1M4 LINE L1 -4815 1831 1112 2253 107 65 0 chrX 5698542 5698880 -171275260 + MER46B DNA MER2_type 2 236 0 525 229 34 0 chrX 5699098 5699216 -171274924 - L2 LINE L2 -4 3309 3188 291 288 111 26 chrX 5699207 5699360 -171274780 - L2 LINE L2 -936 2378 2213 * 325 230 171 49 chrX 5700164 5700451 -171273689 + L1 LINE L1 3073 3394 -2752 38 0 0 0 chrX 5700510 5700548 -171273592 + AT_rich Low_complexity Low_complexity 1 38 0 7000 37 1 0 chrX 5700548 5702039 -171272101 - L1PA3 LINE L1 -3 6152 4676 588 212 19 9 chrX 5702066 5702283 -171271857 + C-rich Low_complexity Low_complexity 1 219 0 3615 73 2 0 chrX 5702420 5702942 -171271198 + L1P LINE L1 954 1476 -4670 799 238 22 9 chrX 5703730 5703953 -171270187 + L2 LINE L2 2404 2629 -685 754 137 7 0 chrX 5703969 5704108 -171270032 - L1MA7 LINE L1 -2 6289 6150 239 222 0 0 chrX 5704145 5704190 -171269950 - MER5A DNA MER1_type -136 53 9 855 278 111 62 chrX 5704326 5704987 -171269153 + L2 LINE L2 2632 3313 0 574 236 48 24 chrX 5705092 5705300 -171268840 - L1MC5 LINE L1 -51 7910 7698 727 166 38 55 chrX 5705317 5705489 -171268651 - L1ME2 LINE L1 -158 6008 5840 536 204 154 49 chrX 5705674 5705836 -171268304 + MER5A DNA MER1_type 9 187 -2 2133 182 0 11 chrX 5705964 5706333 -171267807 - MLT1A1 LTR MaLR 0 365 1 972 189 18 28 chrX 5707296 5707513 -171266627 + MER20 DNA MER1_type 1 215 -4 411 218 20 30 chrX 5707822 5707923 -171266217 + MER5A DNA MER1_type 15 114 -75 606 233 80 6 chrX 5707983 5708146 -171265994 - MER5B DNA MER1_type -3 175 1 485 289 82 6 chrX 5708220 5708379 -171265761 + MIR SINE MIR 2 172 -90 765 230 43 95 chrX 5708390 5708759 -171265381 - MLT2C1 LTR ERVL -4 393 44 * 776 169 5 65 chrX 5708590 5708774 -171265366 - MLT1E3 LTR MaLR -402 222 50 352 286 20 27 chrX 5708775 5708922 -171265218 - MLT2F LTR ERVL -517 146 1 210 333 13 0 chrX 5708922 5709000 -171265140 + MIR SINE MIR 181 259 -3 1315 193 94 12 chrX 5709347 5709678 -171264462 + L1MD3 LINE L1 7635 7992 -3 214 227 45 15 chrX 5710606 5710672 -171263468 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 461 194 82 0 chrX 5710776 5710874 -171263266 - L2 LINE L2 0 3313 3208 657 239 6 28 chrX 5710889 5711065 -171263075 - MIR SINE MIR -2 260 89 638 259 20 73 chrX 5711963 5712210 -171261930 + MIR SINE MIR 15 248 -14 525 192 30 0 chrX 5712366 5712465 -171261675 - MER5A DNA MER1_type -77 112 11 269 380 9 9 chrX 5712483 5712591 -171261549 + MIR3 SINE MIR 76 183 -25 731 257 103 94 chrX 5712598 5713142 -171260998 + MLT1H LTR MaLR 1 549 0 333 175 0 0 chrX 5713346 5713403 -171260737 - Tigger5 DNA MER2_type -3 2320 2264 * 372 210 12 12 chrX 5713399 5713480 -171260660 + Tigger5 DNA MER2_type 2242 2322 -1 822 120 6 84 chrX 5713726 5713893 -171260247 + Tigger1 DNA MER2_type 1 154 -2264 * 1076 140 45 18 chrX 5713887 5714108 -171260032 + Tigger1 DNA MER2_type 2192 2418 0 2465 122 3 31 chrX 5715073 5715457 -171258683 - MER83C LTR ERV1 0 373 1 501 259 229 34 chrX 5715662 5715898 -171258242 - L2 LINE L2 -111 3202 2921 24 0 0 0 chrX 5715929 5715953 -171258187 + AT_rich Low_complexity Low_complexity 1 24 0 3027 126 22 38 chrX 5717234 5717782 -171256358 - L1MB2 LINE L1 -4 6167 5629 31 44 0 0 chrX 5718005 5718050 -171256090 + AT_rich Low_complexity Low_complexity 1 45 0 212 194 48 0 chrX 5718158 5718220 -171255920 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 195 184 0 0 chrX 5718252 5718290 -171255850 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 189 331 86 60 chrX 5719249 5719400 -171254740 + L3 LINE CR1 1224 1378 -199 607 249 49 53 chrX 5719801 5720146 -171253994 - MLT1I LTR MaLR -1 408 67 5246 125 29 14 chrX 5720360 5721214 -171252926 + L1MC1 LINE L1 5461 6327 -6 305 315 19 19 chrX 5721233 5721341 -171252799 + L3 LINE CR1 1469 1576 -1 351 390 58 25 chrX 5721361 5721635 -171252505 - L3 LINE CR1 -6 1571 1289 294 339 204 17 chrX 5722045 5722644 -171251496 + L2 LINE L2 1912 2622 -692 377 326 27 62 chrX 5722699 5722923 -171251217 - HAL1 LINE L1 -61 2446 2231 23 54 0 0 chrX 5723245 5723282 -171250858 + AT_rich Low_complexity Low_complexity 1 37 0 939 100 0 0 chrX 5724315 5724445 -171249695 - L1PA16 LINE L1 -10 6156 6027 1128 203 11 89 chrX 5724624 5724974 -171249166 + MLT2B1 LTR ERVL 1 323 -197 305 299 27 54 chrX 5725166 5725390 -171248750 + MER102b DNA MER1_type 124 341 0 286 261 36 18 chrX 5725448 5725559 -171248581 - MLT1J LTR MaLR 0 511 399 409 305 54 69 chrX 5725591 5726014 -171248126 + MLT1J LTR MaLR 1 417 -94 262 126 78 0 chrX 5726723 5726826 -171247314 + (TA)n Simple_repeat Simple_repeat 2 112 0 892 211 29 61 chrX 5728020 5728300 -171245840 - L1MD2 LINE L1 -17 6342 6072 228 184 79 53 chrX 5728340 5728416 -171245724 - MIR SINE MIR -63 199 122 432 0 0 0 chrX 5728650 5728698 -171245442 + (CA)n Simple_repeat Simple_repeat 1 48 0 731 292 142 0 chrX 5729176 5729281 -171244859 + L2 LINE L2 2046 2135 -1179 1115 198 28 0 chrX 5729281 5729493 -171244647 + MER20 DNA MER1_type 2 219 0 731 292 142 0 chrX 5729493 5729719 -171244421 + L2 LINE L2 2135 2424 -890 1698 217 9 0 chrX 5730002 5730338 -171243802 + MER58B DNA MER1_type 1 339 -2 242 304 230 6 chrX 5730396 5730557 -171243583 + MIR SINE MIR 58 254 -8 33 0 0 0 chrX 5730567 5730600 -171243540 + AT_rich Low_complexity Low_complexity 1 33 0 1689 211 17 42 chrX 5732071 5732473 -171241667 - MSTD LTR MaLR -2 394 3 628 294 25 0 chrX 5732476 5732678 -171241462 - LTR16C LTR ERVL -9 482 276 546 219 0 47 chrX 5732678 5732806 -171241334 - MER58A DNA MER1_type 0 224 103 1209 115 25 10 chrX 5732809 5733009 -171241131 + MER2 DNA MER2_type 4 206 -139 21 36 0 0 chrX 5733016 5733044 -171241096 + AT_rich Low_complexity Low_complexity 1 28 0 260 163 0 0 chrX 5733089 5733132 -171241008 + MER2 DNA MER2_type 301 343 -2 308 250 141 0 chrX 5733133 5733225 -171240915 - MER58A DNA MER1_type -2 105 1 605 187 159 0 chrX 5733233 5733415 -171240725 - MER5C DNA MER1_type -1 323 113 551 291 50 6 chrX 5733420 5733599 -171240541 - MIR SINE MIR -55 207 21 25 65 0 0 chrX 5733882 5733928 -171240212 + AT_rich Low_complexity Low_complexity 1 46 0 1072 207 55 28 chrX 5733938 5734283 -171239857 + MSTC LTR MaLR 1 428 0 2343 90 30 0 chrX 5734562 5734862 -171239278 - AluSg SINE Alu -1 309 1 2172 159 22 84 chrX 5735157 5735692 -171238448 - MLT1D LTR MaLR 0 505 4 578 121 20 0 chrX 5736039 5736138 -171238002 + MER89 LTR ERV1 459 559 0 2808 79 3 8 chrX 5736659 5737025 -171237115 + THE1B LTR MaLR 1 364 0 303 301 88 37 chrX 5737285 5737345 -171236795 - MIR3 SINE MIR -1 207 152 673 153 68 74 chrX 5737345 5737521 -171236619 + MER5B DNA MER1_type 4 178 0 303 301 88 37 chrX 5737521 5737596 -171236544 - MIR3 SINE MIR -56 152 65 362 198 198 64 chrX 5737663 5737820 -171236320 - MER5B DNA MER1_type 0 178 1 2116 138 0 0 chrX 5737842 5738133 -171236007 + AluSx SINE Alu 1 291 -21 2546 188 90 2 chrX 5738652 5739173 -171234967 - MLT1F1 LTR MaLR 0 567 1 2564 23 0 0 chrX 5739235 5739534 -171234606 + L1PA2 LINE L1 5857 6155 0 422 331 58 0 chrX 5740022 5740194 -171233946 + MIR SINE MIR 17 198 -64 25 31 0 0 chrX 5740735 5740767 -171233373 + AT_rich Low_complexity Low_complexity 1 32 0 799 326 61 22 chrX 5741590 5741952 -171232188 - L2 LINE L2 -639 2675 2300 2183 121 14 93 chrX 5742343 5742772 -171231368 + MLT2C1 LTR ERVL 1 395 -2 405 0 0 0 chrX 5742943 5742988 -171231152 + (GA)n Simple_repeat Simple_repeat 2 46 0 2824 209 37 35 chrX 5743515 5744596 -171229544 + L1ME2 LINE L1 4997 6074 -90 1842 172 0 3 chrX 5745473 5745775 -171228365 - AluJo SINE Alu -11 301 1 25 0 0 0 chrX 5746342 5746367 -171227773 + AT_rich Low_complexity Low_complexity 1 25 0 203 100 0 50 chrX 5747147 5747187 -171226953 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 2099 133 3 13 chrX 5747217 5747519 -171226621 - AluSx SINE Alu -13 299 1 1066 196 48 0 chrX 5747776 5747985 -171226155 + MER20 DNA MER1_type 1 219 0 390 293 98 10 chrX 5748552 5748745 -171225395 - MIR SINE MIR -45 217 1 237 379 46 0 chrX 5749627 5749714 -171224426 + MIR SINE MIR 33 123 -85 500 236 70 70 chrX 5750098 5750357 -171223783 - ORSL DNA AcHobo 0 275 17 207 263 197 26 chrX 5750387 5750539 -171223601 + MIR SINE MIR 28 205 -57 1159 90 56 0 chrX 5751042 5751220 -171222920 - L1M2 LINE L1 -540 5751 5564 2683 116 34 27 chrX 5751221 5751695 -171222445 + L1MA7 LINE L1 5815 6291 0 237 250 57 11 chrX 5752366 5752454 -171221686 + L1ME4a LINE L1 5994 6085 -36 224 245 38 0 chrX 5753178 5753231 -171220909 + L2 LINE L2 3259 3313 0 257 240 74 80 chrX 5753326 5753501 -171220639 + L1ME LINE L1 5601 5774 -347 461 162 86 9 chrX 5753657 5753762 -171220378 + L1MC5 LINE L1 7035 7147 -814 1551 222 189 2 chrX 5753790 5754241 -171219899 - MLT1F LTR MaLR -3 539 5 979 207 31 105 chrX 5754247 5754705 -171219435 + L1MC5 LINE L1 7168 7591 -370 2064 142 7 0 chrX 5755087 5755382 -171218758 + AluSx SINE Alu 1 297 -15 2209 103 0 3 chrX 5755638 5755928 -171218212 - AluSq SINE Alu -24 289 1 2404 146 41 56 chrX 5755932 5756465 -171217675 - L1MB7 LINE L1 -76 6108 5584 1682 157 80 17 chrX 5756477 5756828 -171217312 + THE1C LTR MaLR 1 373 -2 23 54 0 0 chrX 5756828 5756865 -171217275 + AT_rich Low_complexity Low_complexity 1 37 0 349 183 9 122 chrX 5757096 5757211 -171216929 + L1MC5 LINE L1 7755 7856 -105 2226 99 16 0 chrX 5758113 5758416 -171215724 + AluSg1 SINE Alu 2 309 0 972 200 10 10 chrX 5759224 5759429 -171214711 - LTR48B LTR ERV1 0 644 440 1607 183 159 7 chrX 5760085 5760500 -171213640 - LTR48 LTR ERV1 -309 478 1 1686 156 87 10 chrX 5761616 5761905 -171212235 - AluJb SINE Alu -1 311 1 1092 174 1 4 chrX 5761960 5762203 -171211937 + MER58A DNA MER1_type 1 219 -5 432 234 193 27 chrX 5762336 5762751 -171211389 + MLT1H LTR MaLR 12 545 -10 22 0 0 0 chrX 5763368 5763390 -171210750 + AT_rich Low_complexity Low_complexity 1 22 0 3441 146 38 5 chrX 5763415 5764045 -171210095 + L1MB2 LINE L1 5520 6170 -1 1041 211 19 5 chrX 5764584 5764793 -171209347 - MER58A DNA MER1_type -3 221 10 23 0 0 0 chrX 5765008 5765031 -171209109 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chrX 5765385 5765412 -171208728 + AT_rich Low_complexity Low_complexity 1 27 0 222 221 116 116 chrX 5765644 5765739 -171208401 + MER5A DNA MER1_type 95 189 0 357 287 11 0 chrX 5765821 5765915 -171208225 + L1MC/D LINE L1 5519 5613 -508 21 0 0 0 chrX 5766466 5766487 -171207653 + AT_rich Low_complexity Low_complexity 1 21 0 226 301 30 53 chrX 5767397 5767530 -171206610 + L1MC/D LINE L1 5682 5811 -1997 226 203 14 14 chrX 5767568 5767642 -171206498 + (TA)n Simple_repeat Simple_repeat 2 75 0 708 211 175 119 chrX 5768164 5768643 -171205497 - MLT1H LTR MaLR -8 541 36 1357 164 29 21 chrX 5769674 5769689 -171204451 - L1MB7 LINE L1 -21 6163 6150 2674 130 34 0 chrX 5769689 5770103 -171204037 - MSTA LTR MaLR 0 428 1 1357 164 29 21 chrX 5770103 5770368 -171203772 - L1MB7 LINE L1 -34 6150 5881 610 224 36 24 chrX 5770865 5771030 -171203110 - MER69A DNA AcHobo -10 167 1 2182 193 47 26 chrX 5771105 5771598 -171202542 + MLT1D LTR MaLR 1 503 -2 200 271 0 0 chrX 5771800 5771848 -171202292 + GA-rich Low_complexity Low_complexity 1 48 0 1536 93 14 19 chrX 5772890 5773105 -171201035 + AluSq SINE Alu 1 214 -99 929 186 50 25 chrX 5773105 5773304 -171200836 + AluJo SINE Alu 86 289 -23 518 67 13 0 chrX 5773322 5773397 -171200743 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 288 273 45 53 chrX 5773405 5773537 -171200603 + L2 LINE L2 2155 2285 -1029 843 231 77 15 chrX 5773600 5773630 -171200510 + L2 LINE L2 2625 2652 -661 2001 141 13 7 chrX 5773630 5773815 -171200325 - AluJo SINE Alu -5 307 118 207 0 0 0 chrX 5773815 5773838 -171200302 + (TG)n Simple_repeat Simple_repeat 2 24 0 2001 141 13 7 chrX 5773838 5773957 -171200183 - AluJo SINE Alu -194 118 1 843 231 77 15 chrX 5773957 5774325 -171199815 + L2 LINE L2 2652 3043 -270 2491 60 0 3 chrX 5776949 5777248 -171196892 - AluY SINE Alu -13 298 1 2463 74 3 0 chrX 5779271 5779580 -171194560 + AluY SINE Alu 1 310 -1 2113 107 0 4 chrX 5782008 5782288 -171191852 + AluSq SINE Alu 1 279 -34 619 235 142 73 chrX 5783646 5783935 -171190205 + MER58B DNA MER1_type 3 311 -30 1903 131 0 26 chrX 5783983 5784288 -171189852 + AluJb SINE Alu 1 297 -15 1438 189 86 17 chrX 5784635 5784937 -171189203 + MER58B DNA MER1_type 2 324 -17 1729 166 15 15 chrX 5785463 5785788 -171188352 + L1MB7 LINE L1 5797 6121 -63 423 129 43 0 chrX 5785808 5785878 -171188262 + L1MB5 LINE L1 6094 6166 -8 889 181 50 6 chrX 5786024 5786206 -171187934 + L1MB7 LINE L1 5902 6091 -93 1184 176 75 75 chrX 5786247 5786526 -171187614 - AluJo SINE Alu -31 281 3 369 83 50 0 chrX 5786537 5786597 -171187543 + L1MB7 LINE L1 6122 6184 0 217 258 121 45 chrX 5786698 5786830 -171187310 - L2 LINE L2 -10 3303 3162 1144 199 19 5 chrX 5788617 5788833 -171185307 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chrX 5790766 5790788 -171183352 + AT_rich Low_complexity Low_complexity 1 22 0 476 325 18 24 chrX 5791279 5791448 -171182692 + MER5B DNA MER1_type 1 168 -10 28 0 0 0 chrX 5793265 5793293 -171180847 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chrX 5795452 5795473 -171178667 + (CCCCCG)n Simple_repeat Simple_repeat 1 21 0 302 310 153 72 chrX 5795672 5796353 -171177787 - L1M2 LINE L1 -5610 1239 504 187 255 21 0 chrX 5796491 5796538 -171177602 + L2 LINE L2 3264 3311 -2 307 319 66 36 chrX 5797034 5797200 -171176940 - L2 LINE L2 -780 2534 2364 655 279 40 24 chrX 5797669 5797916 -171176224 + MIR SINE MIR 9 259 -3 198 0 0 0 chrX 5797953 5797975 -171176165 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 215 308 126 61 chrX 5797976 5798190 -171175950 - L2 LINE L2 -14 3258 3031 340 164 75 0 chrX 5798246 5798313 -171175827 - MER90 LTR ERV1 -360 254 183 193 302 0 0 chrX 5798540 5798593 -171175547 - MER5B DNA MER1_type 0 178 126 235 185 15 62 chrX 5798611 5798676 -171175464 + MER5B DNA MER1_type 112 173 -5 574 230 74 120 chrX 5798677 5799095 -171175045 + MLT1L LTR MaLR 144 542 -73 2449 200 34 53 chrX 5799766 5800350 -171173790 - MER90 LTR ERV1 -2 573 1 452 317 37 0 chrX 5800350 5800514 -171173626 - MIR SINE MIR -4 258 89 258 211 0 0 chrX 5800702 5800759 -171173381 + L1ME LINE L1 5799 5855 -266 466 230 129 22 chrX 5801265 5801443 -171172697 - MIR SINE MIR 0 262 66 1133 146 6 22 chrX 5802407 5802585 -171171555 - FAM SINE Alu 0 175 1 260 156 44 0 chrX 5803256 5803301 -171170839 + MLT1K LTR MaLR 540 586 -2 284 304 72 39 chrX 5804098 5804279 -171169861 + L2 LINE L2 2314 2500 -814 396 301 89 79 chrX 5804309 5804801 -171169339 + L2 LINE L2 2453 2949 -365 372 240 66 16 chrX 5804889 5805010 -171169130 + L2 LINE L2 3135 3261 -52 1646 173 0 20 chrX 5805167 5805467 -171168673 + AluJo SINE Alu 2 295 -17 419 254 45 45 chrX 5805669 5805803 -171168337 + L2 LINE L2 3139 3272 0 1867 128 0 32 chrX 5806318 5806453 -171167687 + AluSx SINE Alu 1 124 -188 198 0 0 0 chrX 5806453 5806475 -171167665 + (TA)n Simple_repeat Simple_repeat 2 23 0 1867 128 0 32 chrX 5806475 5806620 -171167520 + AluSx SINE Alu 124 272 -40 279 0 0 0 chrX 5806624 5806655 -171167485 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2964 254 88 25 chrX 5806973 5807723 -171166417 + L1M4 LINE L1 4012 4850 -1296 2030 158 56 12 chrX 5807723 5808046 -171166094 + MER1B DNA MER1_type 1 337 0 2964 254 88 25 chrX 5808046 5808351 -171165789 + L1M4 LINE L1 4850 5134 -1012 239 155 241 0 chrX 5808358 5808416 -171165724 - LOR1a LTR ERV1 -425 72 1 242 270 54 14 chrX 5808650 5808724 -171165416 - MIR SINE MIR -30 232 156 288 130 0 0 chrX 5808787 5808833 -171165307 + (CA)n Simple_repeat Simple_repeat 1 46 0 2076 129 7 7 chrX 5808872 5809166 -171164974 + AluSx SINE Alu 4 297 -15 1955 165 39 59 chrX 5809167 5809253 -171164887 + LOR1b LTR ERV1 63 149 -312 207 0 0 0 chrX 5809253 5809276 -171164864 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1955 165 39 59 chrX 5809276 5809596 -171164544 + LOR1b LTR ERV1 149 461 0 2519 68 0 0 chrX 5810651 5810959 -171163181 + AluY SINE Alu 3 310 -1 352 282 29 52 chrX 5812479 5812653 -171161487 - L1MC4a LINE L1 -1884 5924 5755 268 321 43 27 chrX 5813440 5813627 -171160513 - ERVL LTR ERVL -337 5427 5238 254 388 6 0 chrX 5814244 5814422 -171159718 - L1MC4a LINE L1 -2056 5752 5574 513 190 138 109 chrX 5814438 5814510 -171159630 + MER5A DNA MER1_type 11 79 -110 1660 193 21 0 chrX 5814510 5814795 -171159345 + AluJb SINE Alu 1 291 -21 513 190 138 109 chrX 5814795 5814896 -171159244 + MER5A DNA MER1_type 79 189 0 234 240 182 58 chrX 5814903 5815025 -171159115 - L1MC4a LINE L1 -2247 5561 5456 1774 154 6 61 chrX 5815025 5815355 -171158785 + AluSx SINE Alu 1 312 0 234 240 182 58 chrX 5815355 5815490 -171158650 - L1MC4a LINE L1 -2352 5456 5272 715 199 49 3 chrX 5816085 5816350 -171157790 + MLT1D LTR MaLR 147 505 0 503 226 119 48 chrX 5818754 5818922 -171155218 - MER117 DNA MER1_type 0 197 18 539 291 146 0 chrX 5819122 5819280 -171154860 - MER5A DNA MER1_type 0 189 9 271 280 178 8 chrX 5819353 5819509 -171154631 + MIR SINE MIR 12 189 -63 1050 173 77 29 chrX 5820371 5820579 -171153561 + MER20 DNA MER1_type 1 218 -1 5914 125 30 25 chrX 5821905 5822410 -171151730 - L1MA8 LINE L1 -3 6288 5787 1939 134 44 0 chrX 5822410 5822708 -171151432 - AluSx SINE Alu -1 311 1 5914 125 30 25 chrX 5822708 5823371 -171150769 - L1MA8 LINE L1 -504 5787 5112 197 336 69 9 chrX 5824471 5824587 -171149553 - L2 LINE L2 -21 3292 3170 2138 192 132 9 chrX 5824681 5825129 -171149011 + MLT1D LTR MaLR 3 505 0 6697 104 6 1 chrX 5825442 5827037 -171147103 + L1PA16 LINE L1 4558 6154 -12 27 0 0 0 chrX 5827037 5827064 -171147076 + AT_rich Low_complexity Low_complexity 1 27 0 219 349 95 8 chrX 5827996 5828122 -171146018 - MIR SINE MIR -123 139 3 1586 209 47 3 chrX 5828732 5829052 -171145088 + MER58B DNA MER1_type 1 334 -7 262 339 97 42 chrX 5829501 5829666 -171144474 - MER5A DNA MER1_type 0 189 16 725 126 0 18 chrX 5830201 5830312 -171143828 + AluJb SINE Alu 13 121 -191 180 77 0 0 chrX 5830312 5830338 -171143802 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 196 192 61 61 chrX 5830867 5830966 -171143174 + L2 LINE L2 2386 2484 -830 741 306 70 25 chrX 5830976 5831303 -171142837 + MLT2F LTR ERVL 3 344 -319 247 246 8 59 chrX 5831349 5831421 -171142719 + MLT2F LTR ERVL 552 617 -46 2044 161 24 24 chrX 5831421 5831793 -171142347 - MLT1A2 LTR MaLR -2 372 1 247 246 8 59 chrX 5831793 5831838 -171142302 + MLT2F LTR ERVL 617 663 0 2340 50 0 7 chrX 5831892 5832170 -171141970 - AluY SINE Alu -2 309 34 653 244 0 29 chrX 5832434 5832606 -171141534 + MIR SINE MIR 94 260 -2 1872 148 24 14 chrX 5832680 5832977 -171141163 - AluSx SINE Alu -12 300 1 2419 174 54 11 chrX 5833876 5834324 -171139816 - MLT1C LTR MaLR 0 467 1 277 303 40 0 chrX 5834462 5834561 -171139579 + MLT1J2 LTR MaLR 55 157 -293 1054 201 9 31 chrX 5835498 5835722 -171138418 + MER20 DNA MER1_type 1 219 0 183 207 86 35 chrX 5835833 5835891 -171138249 - MIR SINE MIR -1 261 201 2288 121 0 0 chrX 5835932 5836239 -171137901 - AluSx SINE Alu -5 307 1 288 240 113 95 chrX 5836451 5836531 -171137609 + L1ME4a LINE L1 5813 5890 -231 2121 133 7 0 chrX 5836531 5836824 -171137316 + AluSx SINE Alu 1 295 -17 288 240 113 95 chrX 5836824 5837026 -171137114 + L1ME4a LINE L1 5890 6100 -21 306 0 0 0 chrX 5837591 5837625 -171136515 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 684 177 0 15 chrX 5837937 5838067 -171136073 + MER20 DNA MER1_type 1 128 -91 2180 110 0 13 chrX 5838138 5838438 -171135702 - AluSx SINE Alu -14 298 3 1035 232 135 11 chrX 5838648 5839223 -171134917 + LTR50 LTR ERVL 1 791 -4 730 153 24 0 chrX 5840365 5840489 -171133651 + L1MB8 LINE L1 5989 6115 -63 44178 28 21 1 chrX 5840608 5846639 -171127501 - L1HS LINE L1 0 6155 1 552 236 9 96 chrX 5846728 5846948 -171127192 - L1MC4a LINE L1 -1853 5955 5755 491 248 72 8 chrX 5847712 5847837 -171126303 - MIR3 SINE MIR -19 189 57 2733 125 2 20 chrX 5847885 5848294 -171125846 + MER50 LTR ERV1 324 725 -9 2138 106 3 13 chrX 5849899 5850202 -171123938 + AluSp SINE Alu 1 300 -13 2209 113 0 0 chrX 5852268 5852560 -171121580 + AluSx SINE Alu 1 292 -20 395 261 71 76 chrX 5853415 5853577 -171120563 - L2 LINE L2 0 3313 3151 1733 124 0 127 chrX 5853577 5853923 -171120217 + AluJo SINE Alu 1 302 0 395 261 71 76 chrX 5853923 5853998 -171120142 - L2 LINE L2 -162 3151 3077 2263 112 3 6 chrX 5854009 5854321 -171119819 - AluSx SINE Alu -1 311 1 271 328 122 28 chrX 5855353 5855537 -171118603 + MIR3 SINE MIR 9 206 -56 601 191 0 0 chrX 5855769 5855876 -171118264 - MER5A DNA MER1_type -82 107 1 231 337 89 15 chrX 5856057 5856259 -171117881 - MLT1L LTR MaLR -202 413 197 23 33 0 0 chrX 5858203 5858233 -171115907 + AT_rich Low_complexity Low_complexity 1 30 0 2068 86 52 0 chrX 5858501 5858802 -171115338 - AluSx SINE Alu 0 315 1 360 220 60 40 chrX 5859285 5859385 -171114755 - L2 LINE L2 0 3313 3212 514 211 199 39 chrX 5859415 5859571 -171114569 + MER5A DNA MER1_type 9 189 0 504 250 11 28 chrX 5860530 5860710 -171113430 + L1M4 LINE L1 2222 2398 -3748 688 287 54 43 chrX 5860733 5861046 -171113094 + L1M4 LINE L1 2650 2958 -3188 873 153 0 23 chrX 5861046 5861177 -171112963 + FLAM_A SINE Alu 1 128 -5 688 287 54 43 chrX 5861177 5861214 -171112926 + L1M4 LINE L1 2958 2993 -3153 2841 101 3 14 chrX 5861214 5861582 -171112558 - THE1B LTR MaLR 0 364 1 688 287 54 43 chrX 5861582 5861919 -171112221 + L1M4 LINE L1 2993 3345 -2801 2143 139 124 23 chrX 5862051 5862438 -171111702 + MSTA LTR MaLR 3 428 0 594 138 60 69 chrX 5863170 5863286 -171110854 + FLAM_A SINE Alu 10 124 -18 6037 138 31 14 chrX 5863303 5864606 -171109534 - L1MA7 LINE L1 0 6291 4964 22 0 0 0 chrX 5864662 5864684 -171109456 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chrX 5865169 5865205 -171108935 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 56 0 0 chrX 5865754 5865790 -171108350 + AT_rich Low_complexity Low_complexity 1 36 0 294 305 53 22 chrX 5866473 5866608 -171107532 - MIR SINE MIR -74 134 13 254 276 29 29 chrX 5867278 5867383 -171106757 - L1 LINE L1 -1134 5012 4908 181 358 173 26 chrX 5867546 5867772 -171106368 - L2 LINE L2 -5 3267 3009 612 186 98 0 chrX 5867839 5867941 -171106199 + FLAM_A SINE Alu 9 120 -22 200 305 16 47 chrX 5868149 5868277 -171105863 - L2 LINE L2 -646 2668 2545 243 291 71 47 chrX 5869166 5869293 -171104847 + MIR3 SINE MIR 73 202 -6 302 216 117 9 chrX 5870010 5870121 -171104019 - L1MEc LINE L1 -4080 2316 2194 1526 122 36 0 chrX 5870121 5870342 -171103798 - L1PA15 LINE L1 -2 6163 5935 340 256 0 22 chrX 5871112 5871202 -171102938 + L1MC4 LINE L1 6614 6701 -1341 1993 142 23 54 chrX 5871244 5871467 -171102673 - MER2 DNA MER2_type 0 344 133 1901 136 0 0 chrX 5871467 5871759 -171102381 + AluSx SINE Alu 19 310 0 1993 142 23 54 chrX 5871759 5871887 -171102253 - MER2 DNA MER2_type -211 133 3 2090 127 16 7 chrX 5872892 5873200 -171100940 + AluJb SINE Alu 1 311 -1 651 248 171 0 chrX 5873315 5873525 -171100615 - MIR SINE MIR -5 257 12 1959 141 3 0 chrX 5873603 5874028 -171100112 + AluSx SINE Alu 1 426 0 1968 132 0 4 chrX 5875826 5876107 -171098033 + AluSx SINE Alu 20 299 -13 671 258 112 27 chrX 5876281 5876541 -171097599 + L2 LINE L2 3021 3302 -11 305 141 47 16 chrX 5877642 5877706 -171096434 + L1MB7 LINE L1 6110 6175 -9 217 320 100 0 chrX 5877832 5877932 -171096208 - L2 LINE L2 0 3313 3204 2674 144 74 2 chrX 5878293 5878693 -171095447 - LOR1b LTR ERV1 0 461 26 2724 26 3 0 chrX 5878693 5878999 -171095141 + AluY SINE Alu 1 307 -4 2674 144 74 2 chrX 5878999 5879028 -171095112 - LOR1b LTR ERV1 -435 26 1 180 225 25 0 chrX 5879525 5879565 -171094575 + L3b LINE CR1 1205 1245 -338 259 243 103 56 chrX 5879782 5879889 -171094251 + MIR SINE MIR 131 242 -20 666 243 68 19 chrX 5880074 5880280 -171093860 + MIR SINE MIR 47 262 0 184 297 16 16 chrX 5880443 5880507 -171093633 - MIR SINE MIR -111 151 88 270 0 0 0 chrX 5880518 5880548 -171093592 + (TC)n Simple_repeat Simple_repeat 1 30 0 2154 189 19 43 chrX 5882108 5882578 -171091562 - MLT1C LTR MaLR -8 459 1 376 221 17 15 chrX 5882731 5882838 -171091302 + L1ME2 LINE L1 6028 6139 -31 2233 110 3 0 chrX 5883647 5883955 -171090185 + AluSq SINE Alu 1 309 -4 204 40 0 0 chrX 5891455 5891480 -171082660 + (TG)n Simple_repeat Simple_repeat 2 26 0 1120 205 19 0 chrX 5891856 5892071 -171082069 - MER20 DNA MER1_type 0 219 1 216 402 25 33 chrX 5892899 5893143 -171080997 - L2 LINE L2 -108 3164 2923 1753 121 121 14 chrX 5893327 5893609 -171080531 - AluSx SINE Alu 0 312 1 728 194 87 24 chrX 5893862 5893940 -171080200 + MER20 DNA MER1_type 1 73 -146 1652 168 157 42 chrX 5893940 5894393 -171079747 - MLT1D LTR MaLR 0 505 1 728 194 87 24 chrX 5894393 5894520 -171079620 + MER20 DNA MER1_type 73 219 0 1097 206 5 5 chrX 5894867 5895086 -171079054 + MER20 DNA MER1_type 1 219 0 284 359 84 7 chrX 5895668 5895810 -171078330 - MIR3 SINE MIR -21 187 35 294 362 48 43 chrX 5896046 5896438 -171077702 + L2 LINE L2 2087 2480 -834 187 321 115 36 chrX 5896830 5896995 -171077145 - L2 LINE L2 -7 3306 3129 1941 136 101 119 chrX 5897011 5897525 -171076615 + MLT1D LTR MaLR 1 505 0 3952 154 32 9 chrX 5898253 5899000 -171075140 + L1MB7 LINE L1 5401 6164 -20 268 327 49 43 chrX 5899971 5900133 -171074007 - MIR SINE MIR -79 183 21 * 764 231 121 5 chrX 5900094 5900293 -171073847 + MIR SINE MIR 29 250 -12 195 170 21 43 chrX 5900377 5900424 -171073716 - L2 LINE L2 -5 3308 3263 237 309 157 51 chrX 5900996 5901232 -171072908 - L3 LINE CR1 -9 1568 1308 240 100 0 0 chrX 5901456 5901496 -171072644 - L1PA13 LINE L1 -1245 4901 4862 6321 87 9 3 chrX 5901498 5902752 -171071388 + L1PA13 LINE L1 4891 6158 -5 1928 160 16 16 chrX 5903593 5903905 -171070235 + AluJo SINE Alu 1 312 0 323 282 123 26 chrX 5904244 5904439 -171069701 - LTR16C LTR ERVL -2 489 276 694 231 144 19 chrX 5904462 5904670 -171069470 - MLT1H LTR MaLR 0 555 322 493 218 9 9 chrX 5904742 5904852 -171069288 - MLT1H1 LTR MaLR -444 111 2 185 279 342 0 chrX 5905146 5905257 -171068883 + MIR SINE MIR 46 194 -68 1362 154 36 0 chrX 5905591 5905838 -171068302 - L1MA6 LINE L1 -9 6291 6036 1035 197 95 19 chrX 5905839 5906103 -171068037 - L1MD3 LINE L1 -161 7834 7551 1123 135 68 117 chrX 5907553 5907879 -171066261 + THE1C LTR MaLR 1 310 -65 3077 216 26 25 chrX 5908585 5909405 -171064735 - L1ME1 LINE L1 -52 6114 5297 227 239 0 45 chrX 5909450 5909517 -171064623 + LTR67 LTR ERVL 231 294 -263 794 239 53 0 chrX 5910007 5910216 -171063924 - MLT1H LTR MaLR -246 303 84 301 100 0 0 chrX 5910981 5911031 -171063109 - L1MB8 LINE L1 -6 6172 6123 2335 158 16 18 chrX 5911031 5911475 -171062665 - L1MB7 LINE L1 -122 6062 5620 222 237 0 0 chrX 5914082 5914158 -171059982 + CT-rich Low_complexity Low_complexity 1 76 0 2906 67 0 0 chrX 5914297 5914669 -171059471 + L1PA6 LINE L1 5777 6148 -6 439 33 0 0 chrX 5915085 5915145 -171058995 - L1MA2 LINE L1 -1 6303 6244 510 219 9 0 chrX 5917652 5917757 -171056383 + MER94 DNA DNA 1 106 -28 30 45 0 0 chrX 5918399 5918443 -171055697 + AT_rich Low_complexity Low_complexity 1 44 0 384 224 35 46 chrX 5918450 5918624 -171055516 - L1ME4a LINE L1 -3 6118 5947 1858 237 117 16 chrX 5918625 5919136 -171055004 + MLT1E LTR MaLR 31 593 0 560 277 34 43 chrX 5919169 5919494 -171054646 - L1ME4a LINE L1 -239 5882 5561 22 0 0 0 chrX 5919591 5919613 -171054527 + AT_rich Low_complexity Low_complexity 1 22 0 1016 176 5 4 chrX 6019642 6023490 -170950650 - ALR/Alpha Satellite centromeric 0 3854 1 1177 162 4 2 chrX 6023504 6025778 -170948362 + ALR/Alpha Satellite centromeric 1 2268 -18819 8441 58 7 0 chrX 6025778 6027633 -170946507 + L1PA3 LINE L1 4292 6152 -3 1177 162 4 2 chrX 6027633 6029238 -170944902 + ALR/Alpha Satellite centromeric 2268 3868 -17219 7013 47 5 2 chrX 6029238 6030861 -170943279 - L1PA3 LINE L1 -3 6152 4523 1177 162 4 2 chrX 6030861 6044528 -170929612 + ALR/Alpha Satellite centromeric 3868 21074 -13 1098 152 3 3 chrX 6044541 6046704 -170927436 + ALR/Alpha Satellite centromeric 1 2164 -59 2510 131 129 164 chrX 6046706 6047589 -170926551 - pTR5 LTR ERV1 0 2438 1587 1025 191 1 0 chrX 6047605 6049987 -170924153 - ALR/Alpha Satellite centromeric -2 2383 1 1344 133 3 0 chrX 6050001 6051432 -170922708 - ALR/Alpha Satellite centromeric 0 1434 1 1188 156 2 1 chrX 6051444 6072481 -170901659 - ALR/Alpha Satellite centromeric -1 21060 1 7319 46 0 0 chrX 6072481 6074024 -170900116 + L1PA3 LINE L1 4610 6151 -4 25 31 0 0 chrX 6074024 6074056 -170900084 + AT_rich Low_complexity Low_complexity 1 32 0 242 0 61 0 chrX 6074061 6074094 -170900046 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1095 165 4 3 chrX 6074094 6080653 -170893487 + ALR/Alpha Satellite centromeric 1 7889 -111 7430 37 0 0 chrX 6080653 6081972 -170892168 - L1PA3 LINE L1 0 6155 4837 9294 33 0 2 chrX 6081983 6083102 -170891038 + L1PA3 LINE L1 3691 4807 -1339 1144 169 4 4 chrX 6083102 6090516 -170883624 + ALR/Alpha Satellite centromeric 1 7416 -9 1083 171 2 3 chrX 6090527 6096019 -170878121 + ALR/Alpha Satellite centromeric 1 5484 -6 1070 155 5 2 chrX 6096031 6097389 -170876751 + ALR/Alpha Satellite centromeric 1 1361 -6 1034 173 1 2 chrX 6097404 6098934 -170875206 + ALR/Alpha Satellite centromeric 1 1527 -26 1089 170 5 2 chrX 6098945 6111117 -170863023 + ALR/Alpha Satellite centromeric 1 12213 -1 1124 176 8 5 chrX 6111129 6115821 -170858319 + ALR/Alpha Satellite centromeric 1 4705 -16 5166 74 3 0 chrX 6115821 6116514 -170857626 - L1PA4 LINE L1 -1070 5076 4382 6933 58 1 9 chrX 6116514 6117586 -170856554 + L1PA4 LINE L1 5085 6152 -3 976 163 4 2 chrX 6117594 6118142 -170855998 + ALR/Alpha Satellite centromeric 1 549 -1 15868 74 9 1 chrX 6118142 6120286 -170853854 + L1PA4 LINE L1 665 2825 -3321 6247 40 3 0 chrX 6120286 6121038 -170853102 + L1PA3 LINE L1 5397 6152 -3 19383 60 2 8 chrX 6121057 6124370 -170849770 + L1PA4 LINE L1 2840 6155 0 1153 163 5 2 chrX 6124375 6134381 -170839759 + ALR/Alpha Satellite centromeric 1 10038 0 1189 143 6 3 chrX 6134394 6141374 -170832766 + ALR/Alpha Satellite centromeric 1 6997 0 1223 152 7 1 chrX 6141387 6151720 -170822420 + ALR/Alpha Satellite centromeric 1 10396 0 4736 41 7 0 chrX 6151747 6152329 -170821811 + L1PA3 LINE L1 5566 6151 -4 1099 156 3 2 chrX 6152385 6153690 -170820450 + ALR/Alpha Satellite centromeric 1 1306 0 201 74 0 0 chrX 6153708 6153735 -170820405 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 7100 50 0 0 chrX 6153735 6154702 -170819438 - L1PA4 LINE L1 -13 6142 5174 20384 49 6 8 chrX 6154702 6157324 -170816816 + L1PA4 LINE L1 2533 5148 -998 1156 163 2 3 chrX 6157326 6164527 -170809613 + ALR/Alpha Satellite centromeric 1 7198 -14 1072 169 0 4 chrX 6164542 6165047 -170809093 + ALR/Alpha Satellite centromeric 1 502 -12 1209 158 9 1 chrX 6165059 6168932 -170805208 + ALR/Alpha Satellite centromeric 1 3901 -64 21058 57 3 9 chrX 6168932 6171723 -170802417 - L1PA4 LINE L1 -1119 5027 2253 6370 86 8 0 chrX 6171723 6172841 -170801299 + L1PA4 LINE L1 5028 6151 -4 1055 167 17 4 chrX 6172874 6175745 -170798395 + ALR/Alpha Satellite centromeric 1 2906 -15 1021 178 7 4 chrX 6175758 6178973 -170795167 + ALR/Alpha Satellite centromeric 1 3224 -14 1180 157 8 3 chrX 6178987 6188885 -170785255 + ALR/Alpha Satellite centromeric 1 10054 -7923 201 39 0 0 chrX 6188885 6188911 -170785229 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1180 157 8 3 chrX 6188911 6196865 -170777275 + ALR/Alpha Satellite centromeric 10054 17967 -10 1114 165 8 4 chrX 6196876 6203452 -170770688 + ALR/Alpha Satellite centromeric 1 6601 -34 369 0 0 0 chrX 6203454 6203495 -170770645 + (TG)n Simple_repeat Simple_repeat 2 42 0 1192 153 7 2 chrX 6203505 6213058 -170761082 + ALR/Alpha Satellite centromeric 1 9602 0 539 230 7 52 chrX 6313061 6313196 -170660944 + MIR SINE MIR 43 171 -91 322 287 64 37 chrX 6314303 6314491 -170659649 - MLT1H LTR MaLR -249 300 108 684 264 0 0 chrX 6314577 6314740 -170659400 - MLT1J1 LTR MaLR -268 178 16 197 316 26 26 chrX 6314950 6315026 -170659114 - L2 LINE L2 -527 2787 2712 844 287 0 0 chrX 6315764 6315959 -170658181 + MIR SINE MIR 51 245 -17 315 49 0 0 chrX 6317134 6317175 -170656965 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 456 99 0 0 chrX 6317174 6317245 -170656895 + (CA)n Simple_repeat Simple_repeat 1 71 0 21 0 0 0 chrX 6317462 6317483 -170656657 + AT_rich Low_complexity Low_complexity 1 21 0 1036 224 25 8 chrX 6318228 6318465 -170655675 + MIR SINE MIR 11 251 -11 720 196 27 91 chrX 6319133 6319352 -170654788 - MER58A DNA MER1_type 0 224 20 654 263 0 31 chrX 6319377 6319537 -170654603 - MIR SINE MIR -107 155 1 203 323 140 11 chrX 6319553 6319739 -170654401 + L2 LINE L2 2953 3162 -151 2337 175 21 14 chrX 6319792 6320215 -170653925 - MSTB LTR MaLR 0 426 1 222 336 35 0 chrX 6320316 6320429 -170653711 - MIR SINE MIR -56 206 90 208 286 20 92 chrX 6320468 6320566 -170653574 - MER5B DNA MER1_type 0 178 88 23 68 0 0 chrX 6321182 6321226 -170652914 + AT_rich Low_complexity Low_complexity 1 44 0 931 219 10 0 chrX 6321293 6321494 -170652646 - MER20 DNA MER1_type 0 219 17 406 320 0 0 chrX 6322205 6322305 -170651835 - L2 LINE L2 -13 3300 3201 1168 214 72 3 chrX 6322415 6322705 -170651435 + MER58B DNA MER1_type 1 310 -31 1843 175 140 37 chrX 6322932 6323390 -170650750 - MLT1D LTR MaLR 0 505 1 261 226 19 0 chrX 6323808 6323861 -170650279 - MER5B DNA MER1_type 0 178 125 3730 80 11 7 chrX 6323864 6324403 -170649737 + L1MA1 LINE L1 5762 6302 0 441 324 161 51 chrX 6324783 6325637 -170648503 + L2 LINE L2 2342 3271 -1 1017 219 23 5 chrX 6325714 6325929 -170648211 + MER58A DNA MER1_type 5 223 -1 21 0 0 0 chrX 6326090 6326111 -170648029 + AT_rich Low_complexity Low_complexity 1 21 0 348 306 69 12 chrX 6326479 6326652 -170647488 + L2 LINE L2 3019 3201 -112 2266 104 3 0 chrX 6326841 6327138 -170647002 - AluSq SINE Alu -13 300 3 326 354 0 39 chrX 6327620 6327750 -170646390 + MIR SINE MIR 13 137 -125 183 146 0 0 chrX 6327808 6327849 -170646291 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 735 145 88 36 chrX 6327923 6328116 -170646024 + L1MA5A LINE L1 6093 6295 -2 198 0 0 0 chrX 6328509 6328531 -170645609 + (T)n Simple_repeat Simple_repeat 1 22 0 2266 107 0 17 chrX 6329329 6329628 -170644512 - AluSc SINE Alu -15 294 1 191 204 20 0 chrX 6329907 6329956 -170644184 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 903 182 11 32 chrX 6329965 6330152 -170643988 + MER20 DNA MER1_type 3 185 -34 183 339 25 25 chrX 6330243 6330361 -170643779 + MIR3 SINE MIR 9 126 -82 1078 300 96 43 chrX 6331764 6332351 -170641789 - L2 LINE L2 -1630 1684 1057 2523 174 22 24 chrX 6332351 6332857 -170641283 + MLT1D LTR MaLR 1 505 0 1078 300 96 43 chrX 6332857 6332923 -170641217 - L2 LINE L2 -2257 1057 996 542 242 150 55 chrX 6333525 6333818 -170640322 + L1MC/D LINE L1 5282 5596 -669 6278 91 3 0 chrX 6333818 6334868 -170639272 - L1PB1 LINE L1 -1 6150 5104 542 242 150 55 chrX 6334868 6334945 -170639195 + L1MC/D LINE L1 5596 5664 -601 474 192 20 68 chrX 6334966 6335112 -170639028 - MLT1J2 LTR MaLR -48 402 264 825 196 131 5 chrX 6335581 6335780 -170638360 + MER58A DNA MER1_type 1 224 0 297 279 0 0 chrX 6336925 6337011 -170637129 + MIR SINE MIR 163 248 -14 207 100 0 0 chrX 6337018 6337048 -170637092 + (CAT)n Simple_repeat Simple_repeat 1 30 0 226 210 0 65 chrX 6337427 6337489 -170636651 + MER112 DNA MER1_type 17 74 -186 1005 211 33 9 chrX 6338833 6339046 -170635094 + MER58A DNA MER1_type 6 223 -1 1681 144 24 94 chrX 6339216 6339590 -170634550 - Tigger3(Golem) DNA MER2_type 0 3029 1 232 273 81 20 chrX 6339809 6339908 -170634232 - MLT1L LTR MaLR -366 249 145 242 242 0 76 chrX 6340128 6340194 -170633946 + L2 LINE L2 3206 3266 -6 408 40 0 0 chrX 6341664 6341714 -170632426 + (CA)n Simple_repeat Simple_repeat 2 51 0 1722 140 15 4 chrX 6342196 6342286 -170631854 - AluJb SINE Alu -44 268 181 207 0 0 0 chrX 6342286 6342309 -170631831 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 1722 140 15 4 chrX 6342309 6342483 -170631657 - AluJb SINE Alu -131 181 1 248 357 83 0 chrX 6342508 6342592 -170631548 + L2 LINE L2 3133 3223 -49 21 36 0 0 chrX 6343452 6343480 -170630660 + AT_rich Low_complexity Low_complexity 1 28 0 322 282 0 0 chrX 6343892 6343970 -170630170 - L3 LINE CR1 -64 1513 1436 802 176 10 137 chrX 6343985 6344292 -170629848 - L1MC3 LINE L1 -15 7770 7503 614 197 131 27 chrX 6344309 6344492 -170629648 - MLT1F1 LTR MaLR -50 517 316 247 271 101 55 chrX 6344640 6344839 -170629301 - L3 LINE CR1 -223 1354 1147 980 211 33 5 chrX 6345177 6345390 -170628750 + MER20 DNA MER1_type 1 219 0 378 215 82 30 chrX 6345757 6345892 -170628248 - Charlie8 DNA MER1_type -2231 186 45 337 302 31 16 chrX 6346443 6346572 -170627568 + MIR SINE MIR 49 179 -83 191 299 58 0 chrX 6346671 6346758 -170627382 + MIR SINE MIR 54 145 -63 2497 102 19 13 chrX 6346801 6347174 -170626966 + THE1C LTR MaLR 1 375 0 6386 98 42 59 chrX 6347175 6348258 -170625882 + THE1C-int LTR MaLR 2 1066 -514 1707 177 9 14 chrX 6348253 6348603 -170625537 - L1MC2 LINE L1 -408 5936 5589 * 219 36 0 0 chrX 6348725 6348753 -170625387 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2271 99 0 37 chrX 6350583 6350907 -170623233 - AluSx SINE Alu 0 312 1 1655 160 57 3 chrX 6350948 6351280 -170622860 + L1MA4 LINE L1 5945 6294 -6 189 314 161 8 chrX 6351299 6351417 -170622723 - MIR SINE MIR -2 260 125 1075 159 29 10 chrX 6352263 6352470 -170621670 + L1MC1 LINE L1 6113 6323 -10 420 222 21 14 chrX 6352491 6352635 -170621505 + (CATA)n Simple_repeat Simple_repeat 1 145 0 2395 81 0 13 chrX 6352750 6353057 -170621083 + AluSc SINE Alu 1 303 -6 207 100 0 0 chrX 6355432 6355462 -170618678 + (A)n Simple_repeat Simple_repeat 1 30 0 3251 48 22 0 chrX 6356827 6357244 -170616896 + L1PA5 LINE L1 5728 6153 -1 609 242 12 6 chrX 6357944 6358105 -170616035 + L2 LINE L2 678 839 -2475 601 271 50 9 chrX 6358180 6358391 -170615749 - MIR SINE MIR -49 213 2 314 293 152 19 chrX 6358409 6358778 -170615362 + L2 LINE L2 872 1289 -2025 1260 95 8 104 chrX 6361296 6361537 -170612603 + L1PA15 LINE L1 5942 6159 -6 1345 117 4 0 chrX 6361918 6362148 -170611992 + L1PA7 LINE L1 2997 3227 -2919 * 6397 37 0 0 chrX 6362146 6362965 -170611175 - L1P LINE L1 -3692 2454 1636 7872 14 0 0 chrX 6362965 6364357 -170609783 + L1PA2 LINE L1 4762 6153 -2 3118 118 4 0 chrX 6364361 6364861 -170609279 + L1PA7 LINE L1 3230 3731 -2415 7096 52 6 2 chrX 6364862 6366529 -170607611 + L1PA7 LINE L1 4480 6154 0 1550 138 5 0 chrX 6366655 6366872 -170607268 - AluSx SINE Alu -94 218 1 283 270 30 60 chrX 6367066 6367166 -170606974 - MIR SINE MIR -48 214 118 733 291 124 45 chrX 6367468 6367983 -170606157 - MLT1L LTR MaLR -59 556 1 685 233 56 42 chrX 6368869 6369084 -170605056 - MER20 DNA MER1_type -1 218 1 747 171 50 17 chrX 6369340 6369521 -170604619 + MER53 DNA DNA 1 187 -2 2496 135 36 42 chrX 6370493 6370997 -170603143 - L1MB8 LINE L1 -6 6172 5672 946 172 41 0 chrX 6371417 6371586 -170602554 - MER45A DNA AcHobo -2 176 1 2519 199 105 5 chrX 6372454 6373102 -170601038 - L1ME3 LINE L1 -11 6134 5422 306 214 57 64 chrX 6373102 6373123 -170601017 - L1MA10 LINE L1 -2 6332 6312 2934 224 39 17 chrX 6373123 6373936 -170600204 - L1ME2 LINE L1 -9 6155 5325 2158 239 67 40 chrX 6373999 6375085 -170599055 - L1ME2 LINE L1 -851 5295 4147 467 205 161 53 chrX 6375143 6375484 -170598656 - L1ME3 LINE L1 -746 5383 5006 426 20 0 0 chrX 6375513 6375564 -170598576 + (TG)n Simple_repeat Simple_repeat 2 52 0 421 266 53 89 chrX 6375616 6376010 -170598130 + L1ME4a LINE L1 5465 5844 -277 2211 200 20 20 chrX 6376012 6376468 -170597672 - MSTB2 LTR MaLR 0 457 2 1747 200 30 30 chrX 6377349 6377810 -170596330 - MLT1C LTR MaLR 0 467 7 829 276 96 68 chrX 6378545 6378810 -170595330 + L2 LINE L2 2864 3147 -166 1103 161 28 5 chrX 6378810 6379021 -170595119 + MER20 DNA MER1_type 1 216 -3 829 276 96 68 chrX 6379021 6379193 -170594947 + L2 LINE L2 3147 3313 0 320 244 12 0 chrX 6379286 6379368 -170594772 - L1MCc LINE L1 -5519 904 822 314 272 35 9 chrX 6379449 6379563 -170594577 - L1ME3 LINE L1 -1572 4557 4441 578 118 0 55 chrX 6379927 6380037 -170594103 - L1MD3 LINE L1 -12 7983 7880 782 225 6 0 chrX 6380211 6380371 -170593769 - MER45A DNA AcHobo -17 161 1 1374 200 61 47 chrX 6381958 6382318 -170591822 - MLT1A1 LTR MaLR 0 365 1 235 276 103 0 chrX 6382758 6382845 -170591295 - L1ME3 LINE L1 -5075 1044 949 1161 249 24 51 chrX 6382853 6383085 -170591055 - L1ME3A LINE L1 -2 6168 5951 1942 156 0 0 chrX 6383085 6383422 -170590718 - AluSx SINE Alu 0 342 6 1161 249 24 51 chrX 6383422 6383641 -170590499 - L1ME3A LINE L1 -219 5951 5728 401 79 0 0 chrX 6383735 6383798 -170590342 - AluJo SINE Alu -8 304 242 1027 171 0 0 chrX 6383810 6383968 -170590172 - AluJo SINE Alu -154 158 1 1693 197 3 0 chrX 6384325 6384620 -170589520 + AluJo SINE Alu 5 300 -12 211 374 24 32 chrX 6385023 6385146 -170588994 - L2 LINE L2 -185 3087 2966 402 74 0 0 chrX 6385146 6385200 -170588940 + (GGA)n Simple_repeat Simple_repeat 2 55 0 481 207 16 16 chrX 6385276 6385397 -170588743 + MER3 DNA MER1_type 48 168 -41 891 155 14 26 chrX 6385409 6385757 -170588383 + MER3 DNA MER1_type 2234 2623 0 324 240 195 32 chrX 6385796 6385950 -170588190 + MIR SINE MIR 84 262 0 26 0 0 0 chrX 6386845 6386871 -170587269 + AT_rich Low_complexity Low_complexity 1 26 0 341 296 113 54 chrX 6387021 6387224 -170586916 - MLT1J LTR MaLR -10 501 287 2015 154 0 7 chrX 6387484 6387790 -170586350 + AluJo SINE Alu 1 304 -8 302 306 37 15 chrX 6389559 6389693 -170584447 - L2 LINE L2 0 3272 3136 401 360 89 0 chrX 6389733 6389936 -170584204 + L2 LINE L2 2804 3024 -289 298 310 123 7 chrX 6390079 6390234 -170583906 + MLT1I LTR MaLR 235 407 -2 716 239 29 0 chrX 6390250 6390388 -170583752 - MIR SINE MIR -96 166 25 197 214 0 0 chrX 6390494 6390536 -170583604 + L2 LINE L2 3231 3272 0 1786 228 52 90 chrX 6390551 6391165 -170582975 - MLT1E LTR MaLR 0 593 3 522 183 91 63 chrX 6391466 6391641 -170582499 - L1ME1 LINE L1 -4 6162 5983 567 282 48 52 chrX 6391691 6391943 -170582197 + MIR SINE MIR 2 252 -10 1021 234 13 99 chrX 6392045 6392439 -170581701 + L2 LINE L2 2953 3312 -1 320 266 65 29 chrX 6392454 6392593 -170581547 - MIR SINE MIR -48 214 71 1000 283 113 3 chrX 6393125 6393478 -170580662 - LTR16C LTR ERVL 0 491 100 2075 242 38 14 chrX 6393512 6394016 -170580124 + LTR40a LTR ERVL 1 516 -3 790 252 54 32 chrX 6394785 6395190 -170578950 - L1M4 LINE L1 -1527 4619 4206 2219 75 0 55 chrX 6396865 6397173 -170576967 + AluY SINE Alu 1 291 -20 659 50 29 43 chrX 6397790 6397930 -170576210 + (TA)n Simple_repeat Simple_repeat 1 138 0 2333 93 0 7 chrX 6398677 6398979 -170575161 + AluSx SINE Alu 1 300 -12 200 241 0 74 chrX 6398999 6399053 -170575087 + L2 LINE L2 3264 3313 0 196 213 0 43 chrX 6399253 6399300 -170574840 - L2 LINE L2 -2 3311 3267 915 207 20 15 chrX 6400218 6400421 -170573719 + MER20 DNA MER1_type 16 219 0 360 0 0 0 chrX 6400881 6400921 -170573219 + (CA)n Simple_repeat Simple_repeat 2 41 0 210 356 85 0 chrX 6402260 6402378 -170571762 - L2 LINE L2 -956 2358 2231 374 218 92 0 chrX 6402394 6402481 -170571659 + MER5B DNA MER1_type 1 95 -83 213 272 194 0 chrX 6402899 6403002 -170571138 - L2 LINE L2 -2415 899 777 1327 188 28 0 chrX 6403490 6403708 -170570432 - MER58A DNA MER1_type 0 224 1 1134 154 72 19 chrX 6405272 6405480 -170568660 - MER20 DNA MER1_type 0 219 1 389 268 73 8 chrX 6405633 6405756 -170568384 - MER94 DNA DNA 0 134 4 289 244 61 52 chrX 6406500 6406615 -170567525 - MLT1J LTR MaLR -203 308 193 245 217 0 18 chrX 6406690 6406754 -170567386 - MLT1J LTR MaLR -454 57 6 1012 208 45 32 chrX 6406812 6407033 -170567107 + MER58A DNA MER1_type 1 224 0 2620 225 105 40 chrX 6407037 6407165 -170566975 + L1ME3A LINE L1 5300 5418 -752 2431 90 0 6 chrX 6407165 6407476 -170566664 - AluY SINE Alu 0 311 3 2620 225 105 40 chrX 6407476 6408165 -170565975 + L1ME3A LINE L1 5418 6170 0 212 207 17 52 chrX 6409148 6409206 -170564934 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 1299 159 66 19 chrX 6411623 6411881 -170562259 - MER58B DNA MER1_type 0 341 72 232 210 32 0 chrX 6412591 6412653 -170561487 - MIR SINE MIR 0 262 199 1124 231 29 91 chrX 6413195 6413679 -170560461 + LTR16A1 LTR ERVL 4 457 0 198 368 86 8 chrX 6413895 6414012 -170560128 - L3 LINE CR1 -82 1495 1370 270 193 0 0 chrX 6414012 6414069 -170560071 + CT-rich Low_complexity Low_complexity 2 58 0 2814 169 40 20 chrX 6414071 6414614 -170559526 - L1MB7 LINE L1 -15 6169 5616 426 293 96 11 chrX 6414616 6414804 -170559336 - L3 LINE CR1 -193 1384 1181 258 348 33 0 chrX 6415382 6415474 -170558666 + MIR SINE MIR 39 133 -129 359 258 61 42 chrX 6415489 6415674 -170558466 - MER5A DNA MER1_type 0 178 1 210 293 13 13 chrX 6415694 6415769 -170558371 - L3b LINE CR1 -249 1334 1260 1358 159 0 44 chrX 6415894 6416120 -170558020 - MER20 DNA MER1_type -1 218 3 1155 218 9 0 chrX 6416901 6417117 -170557023 - MER20 DNA MER1_type -1 218 1 245 318 231 15 chrX 6417209 6417404 -170556736 + MIR SINE MIR 24 260 -2 1767 219 41 92 chrX 6418576 6419001 -170555139 + L1ME3A LINE L1 5552 5937 -233 1090 175 31 49 chrX 6419001 6419224 -170554916 + MER20 DNA MER1_type 1 219 0 1767 219 41 92 chrX 6419224 6419414 -170554726 + L1ME3A LINE L1 5937 6135 -35 24 0 0 0 chrX 6419941 6419965 -170554175 + AT_rich Low_complexity Low_complexity 1 24 0 200 191 48 0 chrX 6420148 6420190 -170553950 + L2 LINE L2 3255 3298 -15 352 222 122 0 chrX 6420190 6420280 -170553860 + L1PB4 LINE L1 5957 6057 -99 362 204 26 18 chrX 6420281 6420394 -170553746 + L1MA6 LINE L1 6185 6298 -2 203 0 0 36 chrX 6421594 6421622 -170552518 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 235 250 62 0 chrX 6421707 6421771 -170552369 - MER3 DNA MER1_type -134 75 8 1344 213 64 69 chrX 6421773 6422224 -170551916 - L1ME3 LINE L1 -151 6011 5563 198 103 0 0 chrX 6422395 6422424 -170551716 + (TCTCC)n Simple_repeat Simple_repeat 3 31 0 504 48 0 0 chrX 6423260 6423323 -170550817 + (TCC)n Simple_repeat Simple_repeat 3 65 0 403 234 81 18 chrX 6424203 6424314 -170549826 - L2 LINE L2 -13 3300 3183 204 237 0 0 chrX 6424375 6424413 -170549727 + polypurine Low_complexity Low_complexity 4 41 0 198 373 19 32 chrX 6424835 6424993 -170549147 + MIR3 SINE MIR 50 205 -3 22 35 0 0 chrX 6425364 6425393 -170548747 + AT_rich Low_complexity Low_complexity 1 29 0 266 220 0 0 chrX 6426047 6426097 -170548043 - L2 LINE L2 -1 3271 3222 267 267 13 0 chrX 6426314 6426389 -170547751 + L2 LINE L2 2361 2436 -878 181 336 124 18 chrX 6426845 6426958 -170547182 - MIR3 SINE MIR -76 132 8 375 299 15 51 chrX 6427356 6427493 -170546647 + L2 LINE L2 3141 3272 0 185 246 53 0 chrX 6428499 6428556 -170545584 + L2 LINE L2 2357 2416 -898 787 303 90 24 chrX 6428571 6429155 -170544985 + L2 LINE L2 2685 3313 0 242 298 43 32 chrX 6429283 6429377 -170544763 + MER5B DNA MER1_type 84 178 0 921 201 45 0 chrX 6429663 6429842 -170544298 + MER20 DNA MER1_type 33 219 0 523 232 93 7 chrX 6431780 6431931 -170542209 - LTR33 LTR ERVL 0 521 358 26 74 0 0 chrX 6432520 6432574 -170541566 + AT_rich Low_complexity Low_complexity 1 54 0 810 268 70 25 chrX 6433139 6433382 -170540758 - MIR SINE MIR 0 262 9 1219 244 55 45 chrX 6433436 6433834 -170540306 - L1MD2 LINE L1 -2 6357 5956 501 62 0 0 chrX 6434003 6434068 -170540072 + (TA)n Simple_repeat Simple_repeat 2 66 0 337 282 70 76 chrX 6435131 6435531 -170538609 - MLT1H LTR MaLR 0 549 85 1844 98 40 0 chrX 6435961 6436236 -170537904 - L1MA8 LINE L1 -1 6290 6005 1891 195 15 12 chrX 6436641 6436980 -170537160 + MER58B DNA MER1_type 1 340 -1 710 228 168 0 chrX 6439116 6439313 -170534827 + L1MB7 LINE L1 5945 6174 -10 431 212 0 30 chrX 6439652 6439784 -170534356 + L1MB8 LINE L1 6044 6171 -7 327 205 27 98 chrX 6439816 6439928 -170534212 + L1MC4 LINE L1 6600 6703 -1339 3936 167 15 46 chrX 6440470 6441365 -170532775 - L1MB7 LINE L1 -15 6169 5417 675 275 19 88 chrX 6440819 6441179 -170532961 - L1PA3 LINE L1 -330 5825 5506 675 252 0 0 chrX 6441179 6441298 -170532842 - FLAM_A SINE Alu -14 119 1 675 275 19 88 chrX 6441298 6441424 -170532716 - L1PA3 LINE L1 -649 5506 5373 180 300 86 50 chrX 6441945 6442165 -170531975 - L2 LINE L2 -357 2957 2730 405 58 0 0 chrX 6442181 6442233 -170531907 + (TG)n Simple_repeat Simple_repeat 1 52 0 4305 162 17 19 chrX 6443336 6444156 -170529984 + L1MB8 LINE L1 5360 6177 -1 217 118 39 0 chrX 6444600 6444651 -170529489 + (TG)n Simple_repeat Simple_repeat 2 54 0 504 309 55 59 chrX 6444857 6444926 -170529214 - MIR SINE MIR -21 241 173 1706 157 36 4 chrX 6444926 6445207 -170528933 + AluJb SINE Alu 1 290 -22 504 309 55 59 chrX 6445207 6445357 -170528783 - MIR SINE MIR -89 173 23 21 0 0 0 chrX 6446397 6446418 -170527722 + AT_rich Low_complexity Low_complexity 1 21 0 1279 168 91 27 chrX 6447498 6447796 -170526344 - MER33 DNA MER1_type -1 323 7 336 350 109 0 chrX 6448963 6449146 -170524994 + MIR SINE MIR 32 234 -28 1048 130 17 122 chrX 6449482 6449720 -170524420 + MER20 DNA MER1_type 3 215 -4 194 304 25 25 chrX 6449889 6449968 -170524172 + L3 LINE CR1 1496 1574 -3 225 336 71 14 chrX 6450718 6450858 -170523282 + L2 LINE L2 2949 3096 -176 3539 140 29 16 chrX 6450884 6451511 -170522629 - L1MB7 LINE L1 -19 6165 5531 334 68 0 0 chrX 6451520 6451564 -170522576 - MADE1 DNA Mariner -34 46 3 207 0 0 0 chrX 6451747 6451770 -170522370 + (T)n Simple_repeat Simple_repeat 1 23 0 204 40 0 0 chrX 6452837 6452862 -170521278 + (T)n Simple_repeat Simple_repeat 1 25 0 666 232 79 0 chrX 6452864 6453028 -170521112 - MIR SINE MIR -10 252 76 1742 168 9 25 chrX 6453213 6453528 -170520612 - AluJb SINE Alu -2 310 1 234 216 65 22 chrX 6453613 6453752 -170520388 + (TA)n Simple_repeat Simple_repeat 2 146 0 183 184 0 0 chrX 6454152 6454190 -170519950 + (TG)n Simple_repeat Simple_repeat 2 39 0 233 259 19 0 chrX 6454555 6454609 -170519531 + L2 LINE L2 3255 3309 -4 828 250 55 5 chrX 6455517 6455717 -170518423 - MER63A DNA MER1_type 0 210 1 779 235 68 0 chrX 6456096 6456258 -170517882 + MER45A DNA AcHobo 6 178 0 1481 181 29 29 chrX 6456565 6456908 -170517232 - L1MB8 LINE L1 -1 6177 5835 474 318 92 18 chrX 6457319 6457536 -170516604 + MIR SINE MIR 19 251 -11 193 222 44 0 chrX 6457708 6457753 -170516387 + MIR SINE MIR 212 258 -4 263 344 179 0 chrX 6458360 6458511 -170515629 + MIR SINE MIR 20 197 -65 186 288 63 9 chrX 6458788 6458899 -170515241 - L2 LINE L2 -275 3038 2922 299 255 10 146 chrX 6459158 6459350 -170514790 + MER5A DNA MER1_type 6 182 -7 337 188 27 181 chrX 6459360 6459509 -170514631 - MER5B DNA MER1_type -52 126 1 7268 48 0 0 chrX 6459648 6460752 -170513388 - L1PA5 LINE L1 0 6154 5051 3041 43 0 0 chrX 6460753 6461124 -170513016 + L1PA5 LINE L1 4709 5079 -1067 903 231 42 9 chrX 6461899 6462111 -170512029 - MER20 DNA MER1_type 0 219 1 7543 30 0 0 chrX 6462338 6463566 -170510574 + L1PA4 LINE L1 4916 6149 -6 605 225 59 6 chrX 6463756 6463925 -170510215 - MER5B DNA MER1_type 0 178 1 212 324 18 12 chrX 6465675 6465845 -170508295 + (TTA)n Simple_repeat Simple_repeat 3 173 0 468 208 85 19 chrX 6466184 6466290 -170507850 + MER81 DNA DNA 2 114 0 680 235 41 12 chrX 6466300 6466470 -170507670 - MER5B DNA MER1_type 0 178 4 489 279 72 36 chrX 6466704 6466926 -170507214 - L1MC4 LINE L1 -1042 7000 6771 24 0 0 0 chrX 6468734 6468758 -170505382 + AT_rich Low_complexity Low_complexity 1 24 0 237 281 0 0 chrX 6468997 6469093 -170505047 + (CACCAT)n Simple_repeat Simple_repeat 3 98 0 1096 151 80 0 chrX 6470208 6470407 -170503733 + MER20 DNA MER1_type 1 215 -4 789 220 16 0 chrX 6470419 6470605 -170503535 + MER5A DNA MER1_type 1 189 0 684 255 122 57 chrX 6471728 6472081 -170502059 + MLT1H LTR MaLR 1 376 -173 588 217 0 0 chrX 6472768 6472911 -170501229 + L1MB7 LINE L1 6033 6175 -9 1735 142 6 13 chrX 6473539 6473855 -170500285 - L1MB8 LINE L1 -3 6175 5862 197 250 47 31 chrX 6473866 6473930 -170500210 - L2 LINE L2 0 3313 3249 1898 212 44 40 chrX 6474449 6474944 -170499196 - MLT1D LTR MaLR -1 504 8 200 315 7 21 chrX 6475041 6475184 -170498956 + T-rich Low_complexity Low_complexity 2 142 0 485 256 218 31 chrX 6476022 6476311 -170497829 - L2 LINE L2 -4 3309 2967 309 207 0 0 chrX 6476656 6476714 -170497426 + MER3 DNA MER1_type 1 58 -151 29 59 0 15 chrX 6477979 6478003 -170496137 + AT_rich Low_complexity Low_complexity 1 24 -43 345 24 0 0 chrX 6478003 6478045 -170496095 + (TG)n Simple_repeat Simple_repeat 1 42 0 29 59 0 15 chrX 6478045 6478088 -170496052 + AT_rich Low_complexity Low_complexity 24 67 0 2470 75 0 0 chrX 6478323 6478629 -170495511 - AluY SINE Alu 0 311 6 1097 191 48 0 chrX 6479685 6479874 -170494266 - MER58A DNA MER1_type -26 198 1 279 0 0 0 chrX 6480200 6480231 -170493909 + (TTG)n Simple_repeat Simple_repeat 2 32 0 547 320 57 12 chrX 6481420 6481664 -170492476 - MIR SINE MIR -7 255 1 186 198 504 33 chrX 6481722 6481843 -170492297 + MER5A DNA MER1_type 9 186 -3 255 31 0 0 chrX 6481926 6481958 -170492182 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 482 254 9 0 chrX 6482067 6482177 -170491963 + MER94 DNA DNA 21 131 -3 235 305 24 24 chrX 6482306 6482388 -170491752 - L2 LINE L2 -5 3267 3186 208 293 12 49 chrX 6483012 6483094 -170491046 + L2 LINE L2 3194 3272 0 294 336 155 27 chrX 6483812 6484256 -170489884 + L2 LINE L2 1706 2206 -1108 1560 147 34 54 chrX 6484936 6485262 -170488878 + MLT1A2 LTR MaLR 4 339 -57 222 277 53 43 chrX 6485299 6485393 -170488747 - MIR SINE MIR -118 144 50 460 257 198 32 chrX 6485752 6486090 -170488050 - MLT1L LTR MaLR -18 597 204 347 301 29 43 chrX 6486482 6486691 -170487449 - MLT1L LTR MaLR -407 208 3 195 267 0 0 chrX 6486694 6486739 -170487401 - MIR SINE MIR -152 110 66 4293 110 5 3 chrX 6486752 6487372 -170486768 - L1PA15 LINE L1 0 6165 5545 225 0 0 0 chrX 6488449 6488474 -170485666 + (TTA)n Simple_repeat Simple_repeat 3 27 0 19108 30 2 0 chrX 6488474 6491523 -170482617 - L1PA3 LINE L1 -18 6137 3085 2139 102 0 7 chrX 6492343 6492626 -170481514 + AluSp SINE Alu 1 281 -32 543 31 0 0 chrX 6492628 6492693 -170481447 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 2749 171 46 2 chrX 6492696 6493241 -170480899 + L1MB7 LINE L1 5597 6165 -19 2115 50 4 0 chrX 6494689 6494950 -170479190 - L1PA8 LINE L1 -7 6165 5904 870 358 86 49 chrX 6495384 6496486 -170477654 - L3 LINE CR1 -17 1560 418 294 206 0 0 chrX 6496693 6496766 -170477374 + (ATG)n Simple_repeat Simple_repeat 3 75 0 261 0 0 0 chrX 6496768 6496797 -170477343 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 537 16 0 0 chrX 6496796 6496858 -170477282 + (GA)n Simple_repeat Simple_repeat 2 63 0 303 275 12 0 chrX 6496860 6496940 -170477200 - MIR SINE MIR -25 237 157 438 20 0 0 chrX 6497524 6497575 -170476565 + (CA)n Simple_repeat Simple_repeat 1 51 0 208 180 0 33 chrX 6498184 6498245 -170475895 + (TA)n Simple_repeat Simple_repeat 2 60 0 393 75 0 0 chrX 6500024 6500077 -170474063 + (TG)n Simple_repeat Simple_repeat 2 54 0 359 249 20 9 chrX 6500931 6501043 -170473097 - MIR3 SINE MIR -24 184 68 371 300 54 8 chrX 6501100 6501230 -170472910 - MIR SINE MIR -71 191 56 667 266 5 29 chrX 6501590 6501797 -170472343 - L2 LINE L2 0 3313 3112 1381 167 34 30 chrX 6502214 6502483 -170471657 + AluJo SINE Alu 39 308 -4 324 0 0 0 chrX 6504166 6504202 -170469938 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1667 167 32 0 chrX 6504346 6504667 -170469473 - AluJb SINE Alu 0 352 23 1088 215 9 0 chrX 6504708 6504927 -170469213 - MER58A DNA MER1_type -2 222 2 782 161 0 15 chrX 6505026 6505156 -170468984 + FLAM_A SINE Alu 2 129 -4 262 243 105 144 chrX 6506283 6506416 -170467724 + MER5B DNA MER1_type 1 127 -51 2457 82 0 16 chrX 6506416 6506734 -170467406 - AluSq SINE Alu 0 313 1 262 243 105 144 chrX 6506734 6506781 -170467359 + MER5B DNA MER1_type 127 174 -4 977 158 94 10 chrX 6506795 6506997 -170467143 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chrX 6507097 6507118 -170467022 + AT_rich Low_complexity Low_complexity 1 21 0 796 263 11 0 chrX 6507368 6507554 -170466586 - MER5A DNA MER1_type 0 189 2 22 0 0 0 chrX 6509905 6509927 -170464213 + AT_rich Low_complexity Low_complexity 1 22 0 694 245 10 16 chrX 6509927 6510046 -170464094 - L1ME1 LINE L1 -17 6149 6030 183 42 0 0 chrX 6510046 6510070 -170464070 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 694 245 10 16 chrX 6510070 6510142 -170463998 - L1ME1 LINE L1 -136 6030 5959 887 296 112 51 chrX 6510178 6510384 -170463756 - L2 LINE L2 -1 3312 3120 2485 48 0 0 chrX 6510384 6510677 -170463463 - AluY SINE Alu -18 293 1 887 296 112 51 chrX 6510677 6511446 -170462694 - L2 LINE L2 -193 3120 2225 36 62 0 0 chrX 6511452 6511516 -170462624 + AT_rich Low_complexity Low_complexity 1 64 0 406 274 32 24 chrX 6511945 6512069 -170462071 - L2 LINE L2 -3 3310 3186 371 369 51 24 chrX 6512119 6512493 -170461647 - L2 LINE L2 -1156 2158 1775 203 300 64 36 chrX 6512575 6512685 -170461455 + MIR SINE MIR 92 204 -58 2031 184 31 33 chrX 6512911 6513367 -170460773 + MSTB2 LTR MaLR 3 457 0 186 270 70 120 chrX 6513423 6513523 -170460617 + L2 LINE L2 3143 3237 -35 285 183 61 17 chrX 6513837 6513952 -170460188 + (TA)n Simple_repeat Simple_repeat 1 120 0 313 247 0 0 chrX 6514395 6514472 -170459668 - MER116 DNA Mariner 0 80 4 37 23 0 0 chrX 6514953 6514997 -170459143 + AT_rich Low_complexity Low_complexity 1 44 0 3323 76 0 0 chrX 6515464 6515897 -170458243 + L1PA7 LINE L1 5716 6148 -6 2748 94 11 3 chrX 6517579 6517951 -170456189 - THE1C LTR MaLR 0 375 1 1840 182 25 37 chrX 6518133 6518539 -170455601 + L1MD2 LINE L1 5956 6356 -3 3483 139 54 27 chrX 6519571 6520203 -170453937 - MER39B LTR ERV1 -4 649 1 430 278 166 12 chrX 6520364 6520533 -170453607 + MIR SINE MIR 58 252 -10 979 190 78 25 chrX 6520693 6520977 -170453163 - L1MA7 LINE L1 -11 6280 5982 191 283 0 0 chrX 6521003 6521056 -170453084 + MIR SINE MIR 207 259 -3 1539 123 73 0 chrX 6521120 6521381 -170452759 + MER7A DNA MER2_type 1 278 -68 270 171 289 0 chrX 6521473 6521549 -170452591 + MER7A DNA MER2_type 249 346 0 250 231 150 75 chrX 6522600 6522773 -170451367 - MIR SINE MIR -42 220 35 21 36 0 0 chrX 6524222 6524250 -170449890 + AT_rich Low_complexity Low_complexity 1 28 0 2476 90 3 0 chrX 6524697 6525009 -170449131 + AluSp SINE Alu 1 313 0 1208 190 9 0 chrX 6525136 6525352 -170448788 - MER20 DNA MER1_type 0 219 2 2600 14 0 0 chrX 6525978 6526262 -170447878 + AluYb8 SINE Alu 12 295 -23 8114 106 39 19 chrX 6526301 6527230 -170446910 - HSMAR2 DNA Mariner -1 1301 338 2340 106 3 6 chrX 6527230 6527542 -170446598 - AluSq SINE Alu -2 311 1 8114 106 39 19 chrX 6527542 6527886 -170446254 - HSMAR2 DNA Mariner -964 338 2 2020 105 0 4 chrX 6528503 6528761 -170445379 + AluSq SINE Alu 39 295 -18 739 174 111 53 chrX 6528769 6528976 -170445164 + MER20 DNA MER1_type 1 219 0 229 29 0 0 chrX 6529276 6529311 -170444829 - L1MA3 LINE L1 0 6305 6271 551 232 7 0 chrX 6530203 6530358 -170443782 + (TG)n Simple_repeat Simple_repeat 2 157 0 25 51 0 0 chrX 6531413 6531452 -170442688 + AT_rich Low_complexity Low_complexity 1 39 0 1141 167 11 0 chrX 6531622 6531808 -170442332 + MER5A DNA MER1_type 1 188 -1 290 343 0 0 chrX 6531814 6531992 -170442148 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 * 341 308 0 0 chrX 6531861 6531994 -170442146 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 589 63 13 0 chrX 6532435 6532514 -170441626 - MADE1 DNA Mariner 0 80 1 191 227 0 0 chrX 6533263 6533307 -170440833 + MIR3 SINE MIR 162 205 -3 986 161 62 0 chrX 6533716 6533908 -170440232 + MER20 DNA MER1_type 2 205 -14 2810 127 8 20 chrX 6534207 6534695 -170439445 + L1MA8 LINE L1 5800 6281 -10 1117 281 200 13 chrX 6534941 6535396 -170438744 - L2 LINE L2 -697 2617 2078 1833 128 55 27 chrX 6535612 6535941 -170438199 + MER1B DNA MER1_type 1 338 -1 2131 72 17 3 chrX 6536172 6536464 -170437676 - L1PA13 LINE L1 0 6163 5868 703 65 0 0 chrX 6536464 6536557 -170437583 + L1PA13 LINE L1 5788 5880 -283 234 350 77 26 chrX 6536688 6536805 -170437335 - MER5A DNA MER1_type -5 184 62 709 309 100 54 chrX 6537321 6537852 -170436288 - L2 LINE L2 -1 3312 2735 666 243 51 6 chrX 6537902 6538079 -170436061 + MIR SINE MIR 9 193 -69 532 397 28 14 chrX 6538120 6538410 -170435730 - L2 LINE L2 -610 2704 2411 369 333 24 19 chrX 6538514 6538721 -170435419 - L2 LINE L2 -908 2406 2199 22 0 0 0 chrX 6539813 6539835 -170434305 + AT_rich Low_complexity Low_complexity 1 22 0 2647 159 98 23 chrX 6540525 6540944 -170433196 - L1MB7 LINE L1 -279 5905 5428 1890 148 0 30 chrX 6540944 6541242 -170432898 - AluJb SINE Alu -10 302 14 2647 159 98 23 chrX 6541242 6541473 -170432667 - L1MB7 LINE L1 -756 5428 5216 180 295 62 54 chrX 6542339 6542451 -170431689 - MIR3 SINE MIR -14 194 82 509 180 86 23 chrX 6544537 6544665 -170429475 + MIR SINE MIR 127 262 0 433 100 50 0 chrX 6545745 6545825 -170428315 - L1PB4 LINE L1 0 6156 6073 302 213 0 0 chrX 6545952 6546013 -170428127 - MER20 DNA MER1_type -157 62 2 2220 104 7 10 chrX 6546039 6546347 -170427793 + AluSc SINE Alu 1 307 -2 2333 107 0 0 chrX 6546735 6547034 -170427106 + AluSx SINE Alu 1 299 -13 357 333 57 14 chrX 6547236 6547377 -170426763 - MIR SINE MIR -108 154 8 1055 172 29 10 chrX 6548854 6549058 -170425082 + MER3 DNA MER1_type 1 208 -1 286 287 147 13 chrX 6549269 6549426 -170424714 + L2 LINE L2 3120 3297 -16 21 0 0 0 chrX 6550729 6550750 -170423390 + AT_rich Low_complexity Low_complexity 1 21 0 250 304 155 41 chrX 6550783 6550977 -170423163 - MIR SINE MIR -34 228 13 198 368 53 18 chrX 6551213 6551327 -170422813 - MIR SINE MIR -110 152 35 442 324 52 6 chrX 6553044 6553217 -170420923 - MIR SINE MIR -10 252 72 508 252 19 56 chrX 6553634 6553860 -170420280 - MIR SINE MIR -50 212 2 226 330 0 50 chrX 6553907 6554007 -170420133 - MIR3 SINE MIR -2 206 112 274 296 28 0 chrX 6554353 6554424 -170419716 + polypurine Low_complexity Low_complexity 4 76 0 187 173 200 0 chrX 6555457 6555532 -170418608 - L2 LINE L2 -785 2529 2440 392 302 7 50 chrX 6556012 6556151 -170417989 + MER5A DNA MER1_type 29 161 -28 203 0 37 0 chrX 6557259 6557286 -170416854 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chrX 6557396 6557421 -170416719 + AT_rich Low_complexity Low_complexity 1 25 0 467 235 0 0 chrX 6558995 6559093 -170415047 + MIR SINE MIR 96 193 -69 220 309 0 15 chrX 6560770 6560838 -170413302 + L2 LINE L2 3246 3312 -1 2224 111 0 0 chrX 6561122 6561420 -170412720 - AluSg SINE Alu -12 298 1 2187 148 11 3 chrX 6562263 6562628 -170411512 + L1MB7 LINE L1 5798 6165 -19 180 171 29 0 chrX 6562817 6562852 -170411288 - MIR SINE MIR -34 228 193 * 318 311 211 36 chrX 6562836 6563248 -170410892 - L2 LINE L2 -7 3306 2823 1065 192 32 46 chrX 6564029 6564310 -170409830 - L1MB8 LINE L1 -3 6175 5899 696 188 111 68 chrX 6564341 6564548 -170409592 - MER20 DNA MER1_type -1 218 3 771 41 0 0 chrX 6564824 6564921 -170409219 + L1PB1 LINE L1 6053 6149 -2 1269 198 5 0 chrX 6566171 6566388 -170407752 + MER20 DNA MER1_type 2 219 0 1025 158 10 46 chrX 6566773 6566969 -170407171 + MER5A DNA MER1_type 1 189 0 194 278 41 82 chrX 6566974 6567071 -170407069 - MER5A DNA MER1_type -24 165 73 2062 177 64 48 chrX 6567163 6567660 -170406480 - MLT1D LTR MaLR 0 505 1 192 280 20 110 chrX 6567702 6567802 -170406338 - L3 LINE CR1 -25 1552 1462 * 265 349 31 23 chrX 6567791 6567920 -170406220 + L2 LINE L2 3177 3306 -7 321 274 28 28 chrX 6568007 6568113 -170406027 + MIR SINE MIR 110 215 -47 353 274 0 19 chrX 6568284 6568390 -170405750 - MER5B DNA MER1_type 0 178 75 368 290 32 24 chrX 6568390 6568514 -170405626 - MER5B DNA MER1_type 0 178 54 181 302 16 16 chrX 6568701 6568764 -170405376 + L2 LINE L2 3204 3266 -6 458 294 18 0 chrX 6569476 6569639 -170404501 - L1MC4a LINE L1 -1911 5897 5732 41 21 0 0 chrX 6569668 6569716 -170404424 + AT_rich Low_complexity Low_complexity 1 48 0 1770 226 57 11 chrX 6569723 6570201 -170403939 - L1ME3A LINE L1 -20 6150 5651 301 239 92 0 chrX 6570220 6570329 -170403811 - L1MC4a LINE L1 -2081 5727 5609 1068 162 0 6 chrX 6570359 6570526 -170403614 - FRAM SINE Alu -10 166 1 1100 180 33 0 chrX 6570972 6571183 -170402957 - MER20 DNA MER1_type 0 219 2 681 237 60 44 chrX 6571184 6571433 -170402707 + MIR SINE MIR 8 260 -2 22 0 0 0 chrX 6571442 6571464 -170402676 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 6572260 6572284 -170401856 + AT_rich Low_complexity Low_complexity 1 24 0 1780 202 81 28 chrX 6572516 6572983 -170401157 - MLT1D LTR MaLR -7 535 4 23 0 0 0 chrX 6573402 6573425 -170400715 + AT_rich Low_complexity Low_complexity 1 23 0 2861 147 31 13 chrX 6573701 6574245 -170399895 + L1MB7 LINE L1 5609 6162 -22 1619 66 14 0 chrX 6576290 6576503 -170397637 + L1PA10 LINE L1 5952 6167 -1 1061 153 6 0 chrX 6576626 6576803 -170397337 - MER58A DNA MER1_type -2 222 45 828 296 24 8 chrX 6577034 6577287 -170396853 + MIR SINE MIR 3 259 -3 34 0 0 0 chrX 6577806 6577840 -170396300 + AT_rich Low_complexity Low_complexity 1 34 0 385 277 106 0 chrX 6578110 6578251 -170395889 - MIR SINE MIR -102 160 5 605 234 10 83 chrX 6578763 6578869 -170395271 - MER5B DNA MER1_type 0 178 91 819 255 5 0 chrX 6578869 6579077 -170395063 - MER3 DNA MER1_type 0 209 1 605 234 10 83 chrX 6579077 6579162 -170394978 - MER5B DNA MER1_type -87 91 1 646 260 6 40 chrX 6580900 6581073 -170393067 + MIR SINE MIR 5 171 -91 322 287 64 37 chrX 6582180 6582368 -170391772 - MLT1H LTR MaLR -249 300 108 684 264 0 0 chrX 6582454 6582617 -170391523 - MLT1J1 LTR MaLR -268 178 16 197 316 26 26 chrX 6582827 6582903 -170391237 - L2 LINE L2 -527 2787 2712 844 287 0 0 chrX 6583641 6583836 -170390304 + MIR SINE MIR 51 245 -17 315 49 0 0 chrX 6585011 6585052 -170389088 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 456 99 0 0 chrX 6585051 6585122 -170389018 + (CA)n Simple_repeat Simple_repeat 1 71 0 21 0 0 0 chrX 6585339 6585360 -170388780 + AT_rich Low_complexity Low_complexity 1 21 0 1036 224 25 8 chrX 6586105 6586342 -170387798 + MIR SINE MIR 11 251 -11 720 196 27 91 chrX 6587010 6587229 -170386911 - MER58A DNA MER1_type 0 224 20 654 263 0 31 chrX 6587254 6587414 -170386726 - MIR SINE MIR -107 155 1 203 323 140 11 chrX 6587430 6587616 -170386524 + L2 LINE L2 2953 3162 -151 2337 175 21 14 chrX 6587669 6588092 -170386048 - MSTB LTR MaLR 0 426 1 222 336 35 0 chrX 6588193 6588306 -170385834 - MIR SINE MIR -56 206 90 208 286 20 92 chrX 6588345 6588443 -170385697 - MER5B DNA MER1_type 0 178 88 23 68 0 0 chrX 6589059 6589103 -170385037 + AT_rich Low_complexity Low_complexity 1 44 0 931 219 10 0 chrX 6589170 6589371 -170384769 - MER20 DNA MER1_type 0 219 17 406 320 0 0 chrX 6590082 6590182 -170383958 - L2 LINE L2 -13 3300 3201 1168 214 72 3 chrX 6590292 6590582 -170383558 + MER58B DNA MER1_type 1 310 -31 1843 175 140 37 chrX 6590809 6591267 -170382873 - MLT1D LTR MaLR 0 505 1 261 226 19 0 chrX 6591685 6591738 -170382402 - MER5B DNA MER1_type 0 178 125 3730 80 11 7 chrX 6591741 6592280 -170381860 + L1MA1 LINE L1 5762 6302 0 441 324 161 51 chrX 6592660 6593514 -170380626 + L2 LINE L2 2342 3271 -1 1017 219 23 5 chrX 6593591 6593806 -170380334 + MER58A DNA MER1_type 5 223 -1 21 0 0 0 chrX 6593967 6593988 -170380152 + AT_rich Low_complexity Low_complexity 1 21 0 348 306 69 12 chrX 6594356 6594529 -170379611 + L2 LINE L2 3019 3201 -112 2266 104 3 0 chrX 6594718 6595015 -170379125 - AluSq SINE Alu -13 300 3 326 354 0 39 chrX 6595497 6595627 -170378513 + MIR SINE MIR 13 137 -125 183 146 0 0 chrX 6595685 6595726 -170378414 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 735 145 88 36 chrX 6595800 6595993 -170378147 + L1MA5A LINE L1 6093 6295 -2 198 0 0 0 chrX 6596386 6596408 -170377732 + (T)n Simple_repeat Simple_repeat 1 22 0 2266 107 0 17 chrX 6597206 6597505 -170376635 - AluSc SINE Alu -15 294 1 191 204 20 0 chrX 6597784 6597833 -170376307 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 903 182 11 32 chrX 6597842 6598029 -170376111 + MER20 DNA MER1_type 3 185 -34 183 339 25 25 chrX 6598120 6598238 -170375902 + MIR3 SINE MIR 9 126 -82 1078 300 96 43 chrX 6599641 6600228 -170373912 - L2 LINE L2 -1630 1684 1057 2523 174 22 24 chrX 6600228 6600734 -170373406 + MLT1D LTR MaLR 1 505 0 1078 300 96 43 chrX 6600734 6600800 -170373340 - L2 LINE L2 -2257 1057 996 542 242 150 55 chrX 6601402 6601695 -170372445 + L1MC/D LINE L1 5282 5596 -669 6278 91 3 0 chrX 6601695 6602745 -170371395 - L1PB1 LINE L1 -1 6150 5104 542 242 150 55 chrX 6602745 6602822 -170371318 + L1MC/D LINE L1 5596 5664 -601 474 192 20 68 chrX 6602843 6602989 -170371151 - MLT1J2 LTR MaLR -48 402 264 825 196 131 5 chrX 6603458 6603657 -170370483 + MER58A DNA MER1_type 1 224 0 297 279 0 0 chrX 6604802 6604888 -170369252 + MIR SINE MIR 163 248 -14 207 100 0 0 chrX 6604895 6604925 -170369215 + (CAT)n Simple_repeat Simple_repeat 1 30 0 226 210 0 65 chrX 6605304 6605366 -170368774 + MER112 DNA MER1_type 17 74 -186 1005 211 33 9 chrX 6606710 6606923 -170367217 + MER58A DNA MER1_type 6 223 -1 1681 144 24 94 chrX 6607093 6607467 -170366673 - Tigger3(Golem) DNA MER2_type -1 3028 1 232 273 81 20 chrX 6607686 6607785 -170366355 - MLT1L LTR MaLR -366 249 145 242 242 0 76 chrX 6608005 6608071 -170366069 + L2 LINE L2 3206 3266 -6 426 39 0 0 chrX 6609541 6609593 -170364547 + (CA)n Simple_repeat Simple_repeat 2 53 0 1722 140 15 4 chrX 6610075 6610165 -170363975 - AluJb SINE Alu -44 268 181 207 0 0 0 chrX 6610165 6610188 -170363952 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 1722 140 15 4 chrX 6610188 6610362 -170363778 - AluJb SINE Alu -131 181 1 248 357 83 0 chrX 6610387 6610471 -170363669 + L2 LINE L2 3133 3223 -49 21 36 0 0 chrX 6611331 6611359 -170362781 + AT_rich Low_complexity Low_complexity 1 28 0 322 282 0 0 chrX 6611771 6611849 -170362291 - L3 LINE CR1 -64 1513 1436 802 176 10 137 chrX 6611864 6612171 -170361969 - L1MC3 LINE L1 -15 7770 7503 614 197 131 27 chrX 6612188 6612371 -170361769 - MLT1F1 LTR MaLR -50 517 316 291 285 90 50 chrX 6612519 6612719 -170361421 - L3 LINE CR1 -223 1354 1147 980 211 33 5 chrX 6613057 6613270 -170360870 + MER20 DNA MER1_type 1 219 0 378 215 82 30 chrX 6613637 6613772 -170360368 - Charlie8 DNA MER1_type -2220 197 56 337 302 31 16 chrX 6614322 6614451 -170359689 + MIR SINE MIR 49 179 -83 191 299 58 0 chrX 6614550 6614637 -170359503 + MIR SINE MIR 54 145 -63 2497 102 19 13 chrX 6614680 6615053 -170359087 + THE1C LTR MaLR 1 375 0 6386 98 42 59 chrX 6615054 6616137 -170358003 + THE1C-int LTR MaLR 2 1066 -514 1707 177 9 14 chrX 6616132 6616482 -170357658 - L1MC2 LINE L1 -408 5936 5589 * 219 36 0 0 chrX 6616604 6616632 -170357508 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2271 99 0 37 chrX 6618462 6618786 -170355354 - AluSx SINE Alu 0 312 1 1655 160 57 3 chrX 6618827 6619159 -170354981 + L1MA4 LINE L1 5945 6294 -6 189 314 161 8 chrX 6619178 6619296 -170354844 - MIR SINE MIR -2 260 125 1075 159 29 10 chrX 6620142 6620349 -170353791 + L1MC1 LINE L1 6113 6323 -10 420 222 21 14 chrX 6620370 6620514 -170353626 + (CATA)n Simple_repeat Simple_repeat 1 145 0 2395 81 0 13 chrX 6620629 6620936 -170353204 + AluSc SINE Alu 1 303 -6 207 100 0 0 chrX 6623311 6623341 -170350799 + (A)n Simple_repeat Simple_repeat 1 30 0 3251 48 22 0 chrX 6624706 6625123 -170349017 + L1PA5 LINE L1 5728 6153 -1 609 242 12 6 chrX 6625823 6625984 -170348156 + L2 LINE L2 678 839 -2475 204 247 65 13 chrX 6626059 6626136 -170348004 - MIR SINE MIR -49 213 133 299 272 22 122 chrX 6626497 6626677 -170347463 - MIR SINE MIR -98 164 3 514 244 34 28 chrX 6627210 6627386 -170346754 + MER5B DNA MER1_type 2 178 0 620 201 169 13 chrX 6627489 6627643 -170346497 + MER5A DNA MER1_type 9 186 -3 2205 89 0 0 chrX 6627678 6627948 -170346192 + AluSg SINE Alu 36 305 -5 3659 30 0 2 chrX 6628214 6628650 -170345490 - L1PA4 LINE L1 -3 6152 5718 180 174 23 198 chrX 6629320 6629406 -170344734 + MER5B DNA MER1_type 64 134 -44 213 39 0 0 chrX 6629685 6629711 -170344429 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2023 103 0 0 chrX 6629715 6629977 -170344163 - AluSx SINE Alu -29 283 22 940 275 0 32 chrX 6631469 6631720 -170342420 + MIR SINE MIR 18 260 -2 189 371 8 24 chrX 6632222 6632346 -170341794 + L2 LINE L2 2362 2483 -831 236 299 76 42 chrX 6632540 6632684 -170341456 + MLT1K LTR MaLR 125 273 -315 356 270 88 22 chrX 6632746 6632883 -170341257 + MLT1K LTR MaLR 401 546 -42 1821 262 135 34 chrX 6633175 6634225 -170339915 - L2 LINE L2 -1 3312 2148 2485 59 0 26 chrX 6634566 6634871 -170339269 + AluY SINE Alu 1 297 -14 294 356 32 23 chrX 6635816 6635994 -170338146 + MIR SINE MIR 17 196 -66 239 208 42 0 chrX 6636392 6636440 -170337700 + L2 LINE L2 3189 3238 -75 286 290 9 37 chrX 6638145 6638252 -170335888 - L2 LINE L2 -8 3305 3202 733 304 30 23 chrX 6639578 6639844 -170334296 - L2 LINE L2 -4 3309 3042 450 333 117 9 chrX 6639904 6640135 -170334005 - MIR SINE MIR 0 262 7 456 221 77 61 chrX 6640150 6640331 -170333809 + MER5A DNA MER1_type 4 187 -2 191 365 65 9 chrX 6641116 6641223 -170332917 - MIR3 SINE MIR -4 204 92 * 195 348 43 0 chrX 6641208 6641277 -170332863 - MIR SINE MIR -171 91 20 516 260 58 98 chrX 6641509 6641905 -170332235 - L2 LINE L2 0 3313 2934 185 218 128 64 chrX 6642292 6642370 -170331770 - L2 LINE L2 -2 3311 3229 489 272 25 4 chrX 6642395 6642606 -170331534 + MLT1J2 LTR MaLR 35 332 -118 192 307 86 36 chrX 6642738 6642878 -170331262 - MIR SINE MIR -51 211 65 181 370 14 83 chrX 6643259 6643535 -170330605 - L2 LINE L2 -12 3260 3004 246 239 98 65 chrX 6643541 6643725 -170330415 + MARNA DNA Mariner 364 553 -33 249 182 0 0 chrX 6644387 6644442 -170329698 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 206 303 181 61 chrX 6645199 6645559 -170328581 - L2 LINE L2 -1218 2096 1694 482 293 103 43 chrX 6645563 6646047 -170328093 - L1ME4a LINE L1 -16 6105 5593 1265 161 5 27 chrX 6646112 6646335 -170327805 - MER20 DNA MER1_type -1 218 1 180 125 0 0 chrX 6647990 6648022 -170326118 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 182 229 0 0 chrX 6648181 6648216 -170325924 - MIR SINE MIR -111 151 117 229 324 0 0 chrX 6648626 6648700 -170325440 + L2 LINE L2 2991 3064 -208 1131 88 6 17 chrX 6648905 6649086 -170325054 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2450 54 0 13 chrX 6649091 6649389 -170324751 - AluY SINE Alu -17 294 1 252 339 8 33 chrX 6649886 6650007 -170324133 - MIR SINE MIR -81 181 64 1227 128 13 66 chrX 6650015 6650241 -170323899 + MER20 DNA MER1_type 6 219 0 449 260 0 68 chrX 6650384 6650530 -170323610 - MER91B DNA MER1_type -53 137 2 250 316 71 0 chrX 6650530 6650628 -170323512 + MIR SINE MIR 81 185 -77 783 93 0 0 chrX 6650631 6650749 -170323391 + (TA)n Simple_repeat Simple_repeat 2 119 0 364 216 20 0 chrX 6654027 6654129 -170320011 + (TA)n Simple_repeat Simple_repeat 2 105 0 225 98 0 0 chrX 6654135 6654176 -170319964 + LTR66 LTR ERVL 399 439 -171 320 284 42 0 chrX 6654763 6654858 -170319282 - L2 LINE L2 0 3313 3215 183 259 179 36 chrX 6655358 6655470 -170318670 + MIR SINE MIR 79 206 -56 577 252 57 102 chrX 6656887 6657022 -170317118 - L1ME4a LINE L1 -7 6114 5974 1543 195 68 0 chrX 6657022 6657314 -170316826 - AluJb SINE Alu 0 312 1 577 252 57 102 chrX 6657314 6657495 -170316645 - L1ME4a LINE L1 -147 5974 5827 1057 100 0 0 chrX 6657495 6657635 -170316505 + L1PB1 LINE L1 6012 6151 0 577 252 57 102 chrX 6657635 6657825 -170316315 - L1ME4a LINE L1 -294 5827 5630 731 258 48 22 chrX 6657856 6658255 -170315885 - L1MC5 LINE L1 -241 7720 7252 475 237 168 56 chrX 6658396 6658628 -170315512 + MLT1K LTR MaLR 331 588 0 813 148 0 37 chrX 6658651 6658786 -170315354 - FLAM_C SINE Alu -13 130 1 408 257 67 0 chrX 6659075 6659180 -170314960 - MIR SINE MIR -27 235 124 1796 156 35 0 chrX 6659253 6659541 -170314599 - MER7A DNA MER2_type -48 298 3 402 21 0 0 chrX 6659541 6659588 -170314552 + (TG)n Simple_repeat Simple_repeat 2 48 0 345 251 128 56 chrX 6659741 6659936 -170314204 + L1ME4a LINE L1 5910 6118 -3 1608 255 68 34 chrX 6661262 6661736 -170312404 - LTR16C LTR ERVL -1 490 1 1693 161 58 10 chrX 6662162 6662454 -170311686 + AluJb SINE Alu 1 306 -6 219 200 67 67 chrX 6662732 6662822 -170311318 - L2 LINE L2 -41 3231 3142 357 326 34 71 chrX 6663635 6663929 -170310211 - L2 LINE L2 0 3272 2990 384 181 0 0 chrX 6664859 6664942 -170309198 + (TA)n Simple_repeat Simple_repeat 1 83 0 407 36 107 0 chrX 6665513 6665569 -170308571 - MER58A DNA MER1_type -6 218 157 328 305 102 0 chrX 6665585 6665713 -170308427 + MER96 DNA MER1_type? 35 175 0 695 202 8 0 chrX 6665722 6665846 -170308294 - MER58A DNA MER1_type 0 161 37 828 337 121 27 chrX 6665866 6666782 -170307358 + L2 LINE L2 1612 2613 -701 23 33 0 0 chrX 6667273 6667303 -170306837 + AT_rich Low_complexity Low_complexity 1 30 0 371 295 72 29 chrX 6668781 6668920 -170305220 + MER5B DNA MER1_type 34 178 0 843 174 99 0 chrX 6668954 6669115 -170305025 + MER20 DNA MER1_type 40 216 -3 2275 107 0 0 chrX 6669476 6669774 -170304366 + AluSg SINE Alu 7 304 -6 1716 124 12 0 chrX 6669985 6670227 -170303913 + L1PA15 LINE L1 5917 6161 -4 2079 86 0 63 chrX 6670232 6670578 -170303562 + AluY SINE Alu 1 327 0 467 225 254 12 chrX 6671800 6671969 -170302171 + MIR SINE MIR 3 212 -50 373 234 68 27 chrX 6671984 6672148 -170301992 - L1MD1 LINE L1 -322 5799 5660 454 244 30 31 chrX 6673363 6673690 -170300450 - L1MD1 LINE L1 -219 5951 5654 919 222 6 11 chrX 6673697 6673877 -170300263 + MER5A DNA MER1_type 1 179 -10 258 309 79 8 chrX 6673903 6674029 -170300111 - L1MD1 LINE L1 -514 5656 5522 756 242 22 36 chrX 6675293 6675516 -170298624 + L1ME3 LINE L1 5940 6159 -3 524 320 69 5 chrX 6675709 6675912 -170298228 - MIR SINE MIR 0 262 47 2551 112 19 16 chrX 6675938 6676312 -170297828 - THE1C LTR MaLR 0 375 1 232 244 0 0 chrX 6676315 6676360 -170297780 + Tigger6 DNA MER2_type 1536 1580 -17 513 0 0 0 chrX 6676388 6676445 -170297695 + (TG)n Simple_repeat Simple_repeat 2 58 0 2170 120 27 0 chrX 6676928 6677228 -170296912 + AluSx SINE Alu 5 312 0 628 297 68 4 chrX 6677276 6677512 -170296628 + MIR SINE MIR 2 252 -10 278 273 40 30 chrX 6677659 6677758 -170296382 + Charlie2 DNA MER1_type 1 100 -2762 239 325 61 9 chrX 6678722 6678836 -170295304 + MIR3 SINE MIR 44 163 -45 187 189 54 0 chrX 6678847 6678884 -170295256 + L2 LINE L2 3265 3303 -10 247 365 126 25 chrX 6678910 6679356 -170294784 + L2 LINE L2 2175 2665 -649 1003 180 62 24 chrX 6679631 6679842 -170294298 - MER20 DNA MER1_type 0 219 1 221 191 21 0 chrX 6680350 6680397 -170293743 + (TGAA)n Simple_repeat Simple_repeat 4 51 0 896 145 8 8 chrX 6681595 6681726 -170292414 - FLAM_C SINE Alu -2 131 1 2050 167 57 18 chrX 6682894 6683277 -170290863 + MER77 LTR ERV1 2 399 -206 1971 144 0 10 chrX 6683545 6683843 -170290297 - AluSx SINE Alu -17 295 1 2408 49 3 29 chrX 6685621 6685928 -170288212 - AluY SINE Alu -12 299 1 2151 113 3 0 chrX 6685939 6686239 -170287901 - AluSg SINE Alu -9 301 1 39 22 0 0 chrX 6687190 6687236 -170286904 + AT_rich Low_complexity Low_complexity 1 46 0 3193 148 40 4 chrX 6687770 6688290 -170285850 + L1PB4 LINE L1 5614 6152 -4 243 0 0 0 chrX 6688656 6688683 -170285457 + (CA)n Simple_repeat Simple_repeat 1 27 0 1540 138 5 0 chrX 6690770 6690987 -170283153 + AluSx SINE Alu 1 218 -94 7589 52 9 0 chrX 6691113 6692783 -170281357 - L1PA7 LINE L1 0 6154 4477 3452 112 0 0 chrX 6692785 6693283 -170280857 - L1PA7 LINE L1 -2419 3727 3230 8390 14 0 0 chrX 6693287 6694679 -170279461 - L1PA2 LINE L1 -2 6153 4762 6842 37 0 0 chrX 6694679 6695498 -170278642 + L1P LINE L1 1636 2454 -3692 1459 117 4 0 chrX 6695496 6695726 -170278414 - L1PA7 LINE L1 -2919 3227 2997 * 1363 96 8 108 chrX 6696107 6696357 -170277783 - L1PA15 LINE L1 -6 6159 5935 383 268 168 35 chrX 6698866 6699235 -170274905 - L2 LINE L2 -2025 1289 872 442 251 45 8 chrX 6699253 6699380 -170274760 + MIR SINE MIR 2 126 -82 1334 180 0 16 chrX 6699623 6699868 -170274272 + AluJo SINE Alu 68 308 -4 824 216 75 9 chrX 6700073 6700286 -170273854 - MER96B DNA MER1_type? -1 416 190 880 102 8 0 chrX 6700326 6700444 -170273696 - AluJb SINE Alu -20 292 174 25 0 0 0 chrX 6700603 6700628 -170273512 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chrX 6701158 6701193 -170272947 + AT_rich Low_complexity Low_complexity 1 35 0 400 156 44 44 chrX 6703797 6703977 -170270163 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 208 222 22 0 chrX 6703978 6704023 -170270117 + (TG)n Simple_repeat Simple_repeat 2 47 0 210 259 0 0 chrX 6704473 6704527 -170269613 + MIR SINE MIR 209 262 0 395 174 65 11 chrX 6705192 6705284 -170268856 - MER5A DNA MER1_type -1 188 92 731 228 0 0 chrX 6705306 6705442 -170268698 + MER45A DNA AcHobo 43 178 0 365 253 32 0 chrX 6705442 6705537 -170268603 - MER5A DNA MER1_type -90 99 2 421 307 113 18 chrX 6707606 6707810 -170266330 + MIR SINE MIR 21 247 -15 276 283 145 7 chrX 6707810 6707955 -170266185 + MIR SINE MIR 75 239 -23 214 250 239 0 chrX 6707972 6708060 -170266080 + MIR SINE MIR 147 255 -7 1078 167 78 29 chrX 6708231 6708613 -170265527 - MLT1D LTR MaLR -55 450 2 21 0 0 0 chrX 6709953 6709974 -170264166 + AT_rich Low_complexity Low_complexity 1 21 0 489 215 35 157 chrX 6710352 6710664 -170263476 - MLT1J2 LTR MaLR 0 450 177 1887 64 0 9 chrX 6710676 6710909 -170263231 - AluY SINE Alu -1 310 80 556 230 99 6 chrX 6710927 6711088 -170263052 - MLT1J2 LTR MaLR -274 176 1 29 47 0 0 chrX 6713066 6713109 -170261031 + AT_rich Low_complexity Low_complexity 1 43 0 28 29 0 0 chrX 6713452 6713487 -170260653 + AT_rich Low_complexity Low_complexity 1 35 0 2148 118 3 0 chrX 6714543 6714840 -170259300 - AluSx SINE Alu -14 298 1 287 188 25 88 chrX 6715828 6715908 -170258232 - MER81 DNA DNA 0 114 40 622 126 58 211 chrX 6715987 6716210 -170257930 - MER53 DNA DNA 0 189 1 282 320 103 0 chrX 6716933 6717030 -170257110 + L2 LINE L2 3163 3269 -3 421 297 103 26 chrX 6717444 6717640 -170256500 + MIR SINE MIR 41 250 -12 345 324 9 0 chrX 6717783 6717891 -170256249 - MIR SINE MIR -117 145 37 264 127 0 0 chrX 6718605 6718660 -170255480 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 688 252 13 0 chrX 6718831 6718982 -170255158 + MER45A DNA AcHobo 26 178 0 225 235 0 44 chrX 6719029 6719097 -170255043 - MIR SINE MIR -57 151 87 2343 147 28 0 chrX 6719352 6719707 -170254433 + MLT1A1 LTR MaLR 1 365 0 1906 162 143 19 chrX 6720360 6720536 -170253604 + MLT1C LTR MaLR 1 154 -313 273 89 0 0 chrX 6720536 6720581 -170253559 + (CA)n Simple_repeat Simple_repeat 1 45 0 1906 162 143 19 chrX 6720581 6720817 -170253323 + MLT1C LTR MaLR 154 464 -3 880 199 21 27 chrX 6721298 6721484 -170252656 + MER5A DNA MER1_type 2 186 -3 2666 39 3 0 chrX 6722110 6722417 -170251723 - AluY SINE Alu -3 308 1 2449 142 43 10 chrX 6722440 6722855 -170251285 - L1MB8 LINE L1 -19 6159 5731 1917 165 0 0 chrX 6723253 6723544 -170250596 + AluJb SINE Alu 1 291 -21 1745 84 51 8 chrX 6724580 6724817 -170249323 - L1PA13 LINE L1 -14 6149 5903 21 0 0 0 chrX 6724880 6724901 -170249239 + AT_rich Low_complexity Low_complexity 1 21 0 1733 122 0 8 chrX 6725082 6725320 -170248820 + AluSq SINE Alu 27 262 -51 463 311 97 5 chrX 6725647 6725843 -170248297 - MIR SINE MIR -2 260 47 2496 116 31 6 chrX 6726167 6726521 -170247619 - THE1B LTR MaLR -1 363 1 2368 88 0 3 chrX 6727101 6727396 -170246744 + AluSg SINE Alu 1 294 -16 3507 56 16 70 chrX 6727462 6727946 -170246194 - L1PA7 LINE L1 -10 6144 5687 180 255 109 76 chrX 6730773 6730957 -170243183 - L2 LINE L2 -14 3258 3069 527 232 90 19 chrX 6731594 6731749 -170242391 + MER5A DNA MER1_type 23 188 -1 699 242 142 13 chrX 6731933 6732377 -170241763 + MLT1G LTR MaLR 32 576 -14 1790 202 83 83 chrX 6733024 6733544 -170240596 + MLT2B1 LTR ERVL 1 520 0 429 211 56 0 chrX 6734435 6734525 -170239615 - MER20 DNA MER1_type 0 219 125 495 283 92 0 chrX 6734719 6734903 -170239237 + MIR SINE MIR 14 214 -48 826 70 0 0 chrX 6734931 6735031 -170239109 + HY3 scRNA scRNA 1 100 -1 555 169 7 110 chrX 6735214 6735350 -170238790 + MER58B DNA MER1_type 220 341 0 226 125 0 0 chrX 6735399 6735431 -170238709 - MER58A DNA MER1_type -39 68 37 242 302 194 35 chrX 6735460 6735718 -170238422 - L3 LINE CR1 -331 1246 948 263 377 70 15 chrX 6735811 6736010 -170238130 - L3 LINE CR1 -1125 452 243 320 232 182 20 chrX 6737640 6737739 -170236401 + MIR SINE MIR 61 175 -87 1100 151 98 34 chrX 6738161 6738366 -170235774 - MER20 DNA MER1_type -1 218 1 393 270 119 19 chrX 6738419 6738578 -170235562 - MIR SINE MIR -53 209 35 1640 156 32 7 chrX 6738637 6738919 -170235221 - AluJb SINE Alu -23 289 1 225 0 0 0 chrX 6739744 6739769 -170234371 + (CCG)n Simple_repeat Simple_repeat 2 26 0 925 195 127 0 chrX 6740259 6740495 -170233645 + Charlie4a DNA MER1_type 74 339 -169 820 284 30 30 chrX 6740525 6740828 -170233312 + LTR16A LTR ERVL 57 359 -91 642 216 51 81 chrX 6743351 6743587 -170230553 - L2 LINE L2 -1 3312 3084 399 301 168 0 chrX 6743609 6743752 -170230388 + MER5A DNA MER1_type 18 184 -5 651 301 119 10 chrX 6743763 6744086 -170230054 - L2 LINE L2 -244 3069 2711 2144 128 0 0 chrX 6744561 6744851 -170229289 + AluSg SINE Alu 1 290 -20 1062 221 9 27 chrX 6745240 6745462 -170228678 + MER20 DNA MER1_type 1 218 -1 280 339 67 0 chrX 6746253 6746433 -170227707 - L2 LINE L2 -934 2380 2189 940 261 25 40 chrX 6746942 6747340 -170226800 - L1MC4a LINE L1 -1959 5849 5461 2264 153 51 36 chrX 6747614 6748064 -170226076 + MSTB2 LTR MaLR 1 457 0 323 266 94 66 chrX 6748143 6748225 -170225915 - L1MC4a LINE L1 -1901 4245 4167 2387 87 0 37 chrX 6748225 6748548 -170225592 - AluSq SINE Alu -2 311 1 323 266 94 66 chrX 6748548 6748751 -170225389 - L1MC4a LINE L1 -1979 4167 3952 2173 104 0 20 chrX 6750955 6751253 -170222887 + AluSx SINE Alu 1 292 -20 309 296 30 15 chrX 6751570 6751702 -170222438 - MLT1K LTR MaLR 0 588 455 272 321 0 0 chrX 6751779 6751863 -170222277 - MLT1K LTR MaLR -346 242 159 240 300 70 46 chrX 6752706 6752861 -170221279 + MIR SINE MIR 20 148 -60 991 197 61 9 chrX 6752883 6753096 -170221044 - MER58A DNA MER1_type 0 224 1 1242 174 97 74 chrX 6753187 6753567 -170220573 + MLT1B LTR MaLR 2 390 0 27 87 0 0 chrX 6753635 6753704 -170220436 + AT_rich Low_complexity Low_complexity 1 69 0 335 258 30 90 chrX 6754116 6754283 -170219857 - L2 LINE L2 -38 3275 3119 2190 161 3 0 chrX 6754526 6754917 -170219223 - L1MC3 LINE L1 -10 7775 7384 527 245 13 14 chrX 6754954 6755103 -170219037 - MIR SINE MIR -67 141 17 197 169 92 62 chrX 6755357 6755422 -170218718 - MER5A DNA MER1_type -1 188 122 246 179 357 0 chrX 6755423 6755507 -170218633 + MER81 DNA DNA 1 114 0 271 216 27 54 chrX 6755529 6755603 -170218537 + MER5A DNA MER1_type 117 188 -1 181 382 136 9 chrX 6755606 6755716 -170218424 + L3b LINE CR1 1399 1522 -61 585 187 32 8 chrX 6755883 6756006 -170218134 + MER5B DNA MER1_type 3 128 -50 1172 177 177 0 chrX 6756035 6756362 -170217778 - MER3 DNA MER1_type 0 2620 2236 350 246 79 0 chrX 6756367 6756481 -170217659 - MER3 DNA MER1_type -41 168 46 270 235 210 0 chrX 6756546 6756627 -170217513 - MER5A DNA MER1_type -83 106 9 301 295 32 0 chrX 6756755 6756850 -170217290 + (TATATG)n Simple_repeat Simple_repeat 2 99 0 2203 108 7 0 chrX 6757584 6757881 -170216259 + AluSx SINE Alu 1 299 -13 280 277 69 0 chrX 6758347 6758448 -170215692 - MIR SINE MIR 0 262 155 1559 202 42 18 chrX 6758449 6758900 -170215240 - LTR37B LTR ERV1 -1 467 6 336 257 140 15 chrX 6758906 6759042 -170215098 - MIR SINE MIR -106 156 4 2055 269 44 12 chrX 6759963 6760605 -170213535 + L1MEc LINE L1 36 697 -5699 2018 260 57 36 chrX 6760616 6761186 -170212954 + L1MEc LINE L1 996 1552 -4844 189 74 0 0 chrX 6761186 6761213 -170212927 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2018 260 57 36 chrX 6761213 6761503 -170212637 + L1MEc LINE L1 1552 1882 -4514 2177 81 7 7 chrX 6761503 6761799 -170212341 + L1PA7 LINE L1 5857 6152 -2 2018 260 57 36 chrX 6761799 6761932 -170212208 + L1MEc LINE L1 1882 2011 -4385 4786 168 8 4 chrX 6761940 6762871 -170211269 - L1PA14 LINE L1 -816 5330 4397 5662 82 7 4 chrX 6762872 6763689 -170210451 + L1PA14 LINE L1 5342 6161 0 1647 221 46 7 chrX 6763696 6764157 -170209983 + L1MEc LINE L1 2013 2491 -3905 327 135 19 0 chrX 6764173 6764225 -170209915 + MLT1E1 LTR MaLR 1 53 -601 300 267 42 33 chrX 6764225 6764345 -170209795 + L1MC4 LINE L1 7639 7759 -283 315 231 150 54 chrX 6764396 6764656 -170209484 + L1MC4 LINE L1 7741 8025 -17 27 0 0 0 chrX 6764826 6764853 -170209287 + AT_rich Low_complexity Low_complexity 1 27 0 2190 114 0 13 chrX 6765006 6765348 -170208792 + AluSq SINE Alu 1 338 0 364 250 9 45 chrX 6765439 6765551 -170208589 - MER5A DNA MER1_type -35 154 47 198 347 31 41 chrX 6765570 6765668 -170208472 + MER5A DNA MER1_type 93 189 0 306 0 0 0 chrX 6765779 6765813 -170208327 + (TG)n Simple_repeat Simple_repeat 2 35 0 255 61 0 0 chrX 6767591 6767624 -170206516 + (T)n Simple_repeat Simple_repeat 1 33 0 992 231 9 18 chrX 6767862 6768087 -170206053 + MER58A DNA MER1_type 2 224 0 36 0 0 0 chrX 6768646 6768682 -170205458 + AT_rich Low_complexity Low_complexity 1 36 0 533 64 13 0 chrX 6768909 6768987 -170205153 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 308 148 16 0 chrX 6769721 6769782 -170204358 + CT-rich Low_complexity Low_complexity 3 64 0 1116 261 74 30 chrX 6771856 6772286 -170201854 - LTR16A LTR ERVL 0 450 2 2868 6 0 0 chrX 6772524 6772835 -170201305 - AluYa5 SINE Alu 0 311 1 457 311 164 15 chrX 6772865 6773267 -170200873 - LTR33 LTR ERVL -25 496 35 615 14 0 0 chrX 6773293 6773365 -170200775 + (GA)n Simple_repeat Simple_repeat 1 72 0 1021 276 31 29 chrX 6775006 6775439 -170198701 - L1MC4 LINE L1 -877 7016 6484 245 301 75 0 chrX 6775589 6775682 -170198458 + MIR SINE MIR 156 255 -7 234 156 0 0 chrX 6776008 6776053 -170198087 + (TG)n Simple_repeat Simple_repeat 2 46 0 332 259 26 9 chrX 6776063 6776179 -170197961 - L1M4 LINE L1 -1298 4848 4731 5298 174 39 57 chrX 6776565 6777280 -170196860 - L1MC3 LINE L1 -8 7777 7093 189 74 0 0 chrX 6777280 6777307 -170196833 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 5298 174 39 57 chrX 6777307 6777847 -170196293 - L1MC3 LINE L1 -692 7093 6545 261 256 58 39 chrX 6777848 6778004 -170196136 + L1MC4a LINE L1 5576 5734 -2074 340 337 63 19 chrX 6778006 6778211 -170195929 + L1MC4a LINE L1 5707 5920 -1888 21 0 0 0 chrX 6779222 6779243 -170194897 + AT_rich Low_complexity Low_complexity 1 21 0 224 308 242 6 chrX 6779519 6779701 -170194439 + MIR SINE MIR 1 225 -37 2867 156 34 6 chrX 6779822 6780295 -170193845 - MER66B LTR ERV1 0 486 1 22 0 0 0 chrX 6781788 6781810 -170192330 + AT_rich Low_complexity Low_complexity 1 22 0 204 289 0 0 chrX 6782070 6782115 -170192025 + polypyrimidine Low_complexity Low_complexity 1 45 0 381 43 0 0 chrX 6782545 6782592 -170191548 + (CA)n Simple_repeat Simple_repeat 2 48 0 314 259 63 28 chrX 6782730 6782873 -170191267 - MLT1K LTR MaLR -9 579 432 209 214 0 0 chrX 6782881 6782923 -170191217 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 2898 174 5 9 chrX 6782971 6783527 -170190613 - L1MB4 LINE L1 -2 6178 5625 527 347 34 5 chrX 6783930 6784308 -170189832 + L1ME3A LINE L1 5496 5884 -286 1814 139 0 23 chrX 6784744 6784921 -170189219 + L1PA16 LINE L1 5867 6036 -130 2054 106 70 25 chrX 6784921 6785280 -170188860 - THE1C LTR MaLR 0 375 1 1814 139 0 23 chrX 6785280 6785404 -170188736 + L1PA16 LINE L1 6036 6161 -5 812 192 99 0 chrX 6786719 6786891 -170187249 + MER5A DNA MER1_type 1 189 0 203 241 133 12 chrX 6787056 6787139 -170187001 - MIR SINE MIR -50 212 120 850 256 60 38 chrX 6787200 6787547 -170186593 + MLT1L LTR MaLR 37 391 -224 297 304 29 0 chrX 6787581 6787683 -170186457 + MLT1L LTR MaLR 496 600 -15 465 98 73 0 chrX 6787826 6787908 -170186232 + L1MC1 LINE L1 6246 6333 0 21 0 0 0 chrX 6787945 6787966 -170186174 + AT_rich Low_complexity Low_complexity 1 21 0 34 72 0 0 chrX 6788399 6788468 -170185672 + AT_rich Low_complexity Low_complexity 1 69 0 320 260 65 0 chrX 6788501 6788578 -170185562 + L2 LINE L2 3228 3309 -4 256 228 0 25 chrX 6788630 6788709 -170185431 - L1M4 LINE L1 -1486 4660 4584 231 274 24 0 chrX 6788762 6788846 -170185294 - L1ME LINE L1 -460 5661 5576 241 255 0 0 chrX 6788893 6788940 -170185200 + (ATG)n Simple_repeat Simple_repeat 2 48 0 536 278 159 0 chrX 6790510 6790661 -170183479 + MER5A DNA MER1_type 9 183 -6 2117 206 113 71 chrX 6791236 6791844 -170182296 - L1ME2 LINE L1 -6 6158 5502 727 150 8 31 chrX 6791844 6791971 -170182169 - FLAM_C SINE Alu -9 124 1 2117 206 113 71 chrX 6791971 6792208 -170181932 - L1ME2 LINE L1 -662 5502 5277 2775 127 29 0 chrX 6792378 6792794 -170181346 + MSTA LTR MaLR 1 428 0 699 304 28 33 chrX 6792814 6793205 -170180935 - L1MCc LINE L1 -6013 410 22 783 251 12 0 chrX 6793410 6793581 -170180559 + MIR SINE MIR 79 251 -11 4398 104 3 20 chrX 6793825 6794471 -170179669 + MER41B LTR ERV1 1 635 0 258 273 149 13 chrX 6794478 6794632 -170179508 + MLT1I LTR MaLR 12 186 -223 494 312 94 8 chrX 6794640 6794874 -170179266 + MLT1I LTR MaLR 152 405 -4 6028 26 1 0 chrX 6796115 6796817 -170177323 - L1PA4 LINE L1 -5 6150 5448 190 259 56 19 chrX 6797004 6797058 -170177082 + L2 LINE L2 3215 3270 -2 187 133 44 0 chrX 6797165 6797210 -170176930 + (TA)n Simple_repeat Simple_repeat 1 47 0 366 337 33 37 chrX 6797957 6798257 -170175883 + L2 LINE L2 2467 2765 -549 257 386 40 0 chrX 6798316 6798417 -170175723 + L2 LINE L2 3103 3207 -65 23 0 0 0 chrX 6798713 6798736 -170175404 + AT_rich Low_complexity Low_complexity 1 23 0 338 261 24 68 chrX 6799349 6799556 -170174584 + L1MC5 LINE L1 7720 7917 -44 2433 233 64 90 chrX 6799606 6800530 -170173610 + MER69 DNA AcHobo 14 913 -1613 7777 147 54 3 chrX 6800532 6801813 -170172327 + L1 LINE L1 16 1361 -6204 1489 186 20 20 chrX 6801824 6802222 -170171918 + L1 LINE L1 4501 4898 -2667 5767 184 41 11 chrX 6802228 6803389 -170170751 + L1MA3 LINE L1 12 1207 -6358 14500 161 27 18 chrX 6803390 6807493 -170166647 + L1MA3 LINE L1 3617 7724 0 363 78 0 0 chrX 6807543 6807594 -170166546 + (CA)n Simple_repeat Simple_repeat 2 52 0 472 244 67 107 chrX 6808528 6808798 -170165342 - MLT1J2 LTR MaLR -124 326 68 521 246 47 15 chrX 6809285 6809535 -170164605 - LTR16A LTR ERVL -7 443 144 333 316 165 0 chrX 6810027 6810160 -170163980 - L2 LINE L2 -1 3271 3117 1241 164 28 0 chrX 6810411 6810624 -170163516 - MER20 DNA MER1_type 0 219 1 269 248 143 56 chrX 6811507 6811668 -170162472 + MER5B DNA MER1_type 2 176 -2 1609 160 190 11 chrX 6812241 6812604 -170161536 + MSTA LTR MaLR 1 428 0 27 29 0 0 chrX 6814191 6814225 -170159915 + AT_rich Low_complexity Low_complexity 1 34 0 672 196 176 0 chrX 6815020 6815173 -170158967 + MIR SINE MIR 23 202 -60 436 275 53 23 chrX 6815242 6815373 -170158767 + MER5A DNA MER1_type 26 160 -29 216 0 0 0 chrX 6815942 6815966 -170158174 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8816 217 23 4 chrX 6816421 6816794 -170157346 - L1PA16 LINE L1 -6 6160 5796 4932 38 5 0 chrX 6816794 6817378 -170156762 - LTR14C LTR ERVK 0 587 1 8816 217 23 4 chrX 6817378 6819979 -170154161 - L1PA16 LINE L1 -370 5796 3146 1343 243 54 28 chrX 6820011 6820525 -170153615 + MLT1G1 LTR MaLR 1 595 0 202 250 0 0 chrX 6820845 6820885 -170153255 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 385 324 90 33 chrX 6821087 6821420 -170152720 - L1M4 LINE L1 -1214 4932 4581 2432 253 129 83 chrX 6821427 6822495 -170151645 + HAL1 LINE L1 9 1027 -1480 2095 126 7 0 chrX 6822495 6822796 -170151344 + AluSx SINE Alu 3 305 -7 2432 253 129 83 chrX 6822796 6822916 -170151224 + HAL1 LINE L1 1027 1140 -1367 2251 78 7 3 chrX 6822916 6823209 -170150931 + AluY SINE Alu 1 294 -17 2432 253 129 83 chrX 6823209 6823760 -170150380 + HAL1 LINE L1 1140 1829 -678 3032 201 18 8 chrX 6823783 6824396 -170149744 + MLT1E1 LTR MaLR 3 621 -33 769 294 138 12 chrX 6824500 6824987 -170149153 + HAL1 LINE L1 1960 2507 0 293 264 139 21 chrX 6825588 6825732 -170148408 + MIR SINE MIR 61 221 -41 23 54 0 0 chrX 6825803 6825840 -170148300 + AT_rich Low_complexity Low_complexity 1 37 0 28942 78 8 163 chrX 6825874 6832781 -170141359 + L1PA16 LINE L1 12 5730 -436 4842 43 7 0 chrX 6832781 6833364 -170140776 + LTR14C LTR ERVK 1 587 0 28942 78 8 163 chrX 6833364 6833742 -170140398 + L1PA16 LINE L1 5730 6165 -1 8084 86 0 1 chrX 6834351 6836270 -170137870 + L1PA3 LINE L1 4231 6152 -3 204 83 56 0 chrX 6836273 6836309 -170137831 + A-rich Low_complexity Low_complexity 2 39 0 1293 258 131 52 chrX 6836354 6837287 -170136853 + HAL1 LINE L1 359 1364 -1143 1530 157 14 7 chrX 6837518 6837804 -170136336 + L1MB3 LINE L1 5894 6181 -2 365 276 6 39 chrX 6838631 6838787 -170135353 + L1ME1 LINE L1 5882 6032 -134 348 174 29 0 chrX 6838800 6838869 -170135271 - L1PB3 LINE L1 -10 6144 6074 430 258 102 88 chrX 6839017 6839437 -170134703 - L1ME4a LINE L1 -81 6040 5610 2286 108 0 0 chrX 6839437 6839733 -170134407 - AluSc SINE Alu -13 296 1 430 258 102 88 chrX 6839733 6839813 -170134327 - L1ME4a LINE L1 -511 5610 5533 4937 155 77 35 chrX 6840532 6841560 -170132580 + MER11C LTR ERVK 1 1071 0 526 319 26 35 chrX 6842751 6842983 -170131157 + MIR SINE MIR 12 241 -21 255 296 10 20 chrX 6843031 6843129 -170131011 + (TAG)n Simple_repeat Simple_repeat 2 98 0 366 23 0 0 chrX 6843191 6843234 -170130906 + (GA)n Simple_repeat Simple_repeat 1 43 0 260 256 26 0 chrX 6843939 6844017 -170130123 - MIR3 SINE MIR -5 203 124 1519 115 93 0 chrX 6844425 6844679 -170129461 + AluSx SINE Alu 38 312 0 420 257 104 64 chrX 6845093 6845342 -170128798 - MIR SINE MIR 0 262 4 25 99 0 0 chrX 6845414 6845495 -170128645 + AT_rich Low_complexity Low_complexity 1 81 0 201 259 17 35 chrX 6847121 6847179 -170126961 - L2 LINE L2 0 3272 3216 311 346 46 59 chrX 6848013 6848337 -170125803 - L2 LINE L2 -449 2865 2546 791 237 24 19 chrX 6848414 6848621 -170125519 + AluSq SINE Alu 6 213 -100 817 203 27 40 chrX 6848726 6848948 -170125192 - L1ME4a LINE L1 -624 5542 5324 1831 172 0 6 chrX 6849109 6849423 -170124717 - AluJo SINE Alu 0 312 1 716 289 84 52 chrX 6849594 6849846 -170124294 - L1ME4a LINE L1 -2575 3571 3328 2336 112 0 0 chrX 6849846 6850158 -170123982 - AluSx SINE Alu 0 312 1 716 289 84 52 chrX 6850158 6850515 -170123625 - L1ME4a LINE L1 -2818 3328 2943 1001 225 38 49 chrX 6850738 6851084 -170123056 + L1ME1 LINE L1 5813 6154 -12 232 281 36 14 chrX 6851162 6851301 -170122839 + L1P LINE L1 2349 2490 -3656 344 304 87 29 chrX 6851379 6851586 -170122554 + L1M4 LINE L1 2584 2802 -3344 22 0 0 0 chrX 6851611 6851633 -170122507 + AT_rich Low_complexity Low_complexity 1 22 0 245 295 72 14 chrX 6851689 6851828 -170122312 + HAL1 LINE L1 28 174 -2333 6153 45 5 2 chrX 6851938 6852785 -170121355 + L1P LINE L1 2903 3751 -2395 783 251 12 0 chrX 6853594 6853765 -170120375 + MIR SINE MIR 79 251 -11 3325 106 2 23 chrX 6854009 6854529 -170119611 + MER41B LTR ERV1 1 509 -126 215 322 11 11 chrX 6854774 6854864 -170119276 + CT-rich Low_complexity Low_complexity 1 90 0 358 241 60 0 chrX 6854928 6855011 -170119129 + MIR SINE MIR 136 223 -39 187 200 40 40 chrX 6855111 6855161 -170118979 + L3b LINE CR1 1277 1326 -257 21 0 0 0 chrX 6855442 6855463 -170118677 + AT_rich Low_complexity Low_complexity 1 21 0 248 315 102 35 chrX 6855620 6855817 -170118323 + MIR SINE MIR 13 222 -40 21 36 0 0 chrX 6856216 6856244 -170117896 + AT_rich Low_complexity Low_complexity 1 28 0 1259 150 47 29 chrX 6856734 6857046 -170117094 + L1MA4 LINE L1 6004 6294 -9 1008 142 18 18 chrX 6857609 6857827 -170116313 + L1P LINE L1 4851 5068 -1078 240 186 12 23 chrX 6858074 6858160 -170115980 + GA-rich Low_complexity Low_complexity 1 85 0 4083 153 23 3 chrX 6859304 6860075 -170114065 - L1 LINE L1 -1617 4923 4137 641 261 48 0 chrX 6860127 6860334 -170113806 + MER46C DNA MER2_type 113 329 -9 2091 119 0 33 chrX 6861003 6861306 -170112834 + AluSx SINE Alu 1 293 -19 23 68 0 0 chrX 6862921 6862965 -170111175 + AT_rich Low_complexity Low_complexity 1 44 0 409 262 96 44 chrX 6864129 6864484 -170109656 - L1MDa LINE L1 -3751 2789 2418 21 57 0 0 chrX 6864727 6864762 -170109378 + AT_rich Low_complexity Low_complexity 1 35 0 552 282 62 57 chrX 6864870 6865256 -170108884 - L1MDa LINE L1 -864 2037 1595 1728 164 94 110 chrX 6865263 6865764 -170108376 - L1MDa LINE L1 -6031 509 17 717 92 0 0 chrX 6866416 6866514 -170107626 - AluSc SINE Alu -211 98 1 1622 275 83 21 chrX 6866862 6867637 -170106503 - HAL1 LINE L1 -396 2111 1289 521 277 152 13 chrX 6867798 6868022 -170106118 + MLT1J2 LTR MaLR 196 450 0 280 235 45 115 chrX 6868022 6868379 -170105761 - HAL1 LINE L1 -1218 1289 958 254 305 126 29 chrX 6868652 6868826 -170105314 - HAL1 LINE L1 -1907 600 410 423 273 17 17 chrX 6869075 6869247 -170104893 - LTR16C LTR ERVL -57 434 263 237 306 116 75 chrX 6870266 6870707 -170103433 + L2 LINE L2 2814 3272 0 856 107 112 56 chrX 6870869 6871047 -170103093 + MER5A DNA MER1_type 2 189 0 896 201 40 0 chrX 6871974 6872173 -170101967 - MER3 DNA MER1_type -1 208 2 191 36 36 0 chrX 6873557 6873585 -170100555 + (TCC)n Simple_repeat Simple_repeat 3 31 0 586 298 30 0 chrX 6873954 6874085 -170100055 - MER91C DNA MER1_type 0 140 6 345 296 102 9 chrX 6874122 6874230 -170099910 - L2 LINE L2 0 3313 3196 187 324 152 19 chrX 6874723 6874828 -170099312 + L2 LINE L2 3145 3263 -9 1685 132 88 15 chrX 6876927 6877268 -170096872 - THE1C LTR MaLR -9 366 1 895 290 57 44 chrX 6877858 6878316 -170095824 - LTR16B LTR ERVL 0 464 1 3139 195 70 17 chrX 6878479 6879260 -170094880 - MER99 DNA DNA 0 828 6 750 208 3 15 chrX 6879646 6879954 -170094186 - MLT1A2 LTR MaLR 0 374 1 3234 139 17 7 chrX 6880323 6880897 -170093243 - L1MB7 LINE L1 -23 6161 5582 525 247 110 26 chrX 6880967 6881121 -170093019 - MER5B DNA MER1_type -8 170 4 580 306 52 6 chrX 6881414 6881587 -170092553 - MIR SINE MIR -80 182 2 211 241 24 72 chrX 6882375 6882458 -170091682 - L2 LINE L2 -84 3229 3151 482 225 220 17 chrX 6882703 6882876 -170091264 - MIR SINE MIR -25 237 30 257 73 0 24 chrX 6882940 6882981 -170091159 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 199 264 194 0 chrX 6882982 6883054 -170091086 - L2 LINE L2 -14 3299 3214 184 297 47 16 chrX 6883113 6883177 -170090963 - L2 LINE L2 -66 3206 3141 1877 153 7 0 chrX 6883486 6883761 -170090379 + AluJo SINE Alu 20 296 -16 285 318 77 12 chrX 6884826 6884996 -170089144 + L2 LINE L2 1668 1848 -1466 789 283 116 44 chrX 6885639 6885937 -170088203 + L2 LINE L2 1671 2007 -1307 1944 152 7 13 chrX 6885937 6886276 -170087864 + AluSx SINE Alu 1 312 0 789 283 116 44 chrX 6886276 6886383 -170087757 + L2 LINE L2 2007 2105 -1209 1411 169 4 4 chrX 6886400 6886661 -170087479 - L1MB5 LINE L1 0 6174 5914 330 273 13 0 chrX 6886701 6886778 -170087362 + L2 LINE L2 2574 2651 -663 252 0 0 0 chrX 6886804 6886832 -170087308 + (CA)n Simple_repeat Simple_repeat 2 29 0 808 151 78 0 chrX 6886912 6887091 -170087049 - L1MB5 LINE L1 -277 5907 5715 1447 227 127 55 chrX 6887092 6887604 -170086536 + L2 LINE L2 2103 2651 -663 1148 187 9 5 chrX 6888259 6888473 -170085667 + MER20 DNA MER1_type 1 215 -4 416 255 39 39 chrX 6889152 6889305 -170084835 - MIR3 SINE MIR -15 193 41 198 0 0 0 chrX 6890670 6890692 -170083448 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chrX 6891211 6891246 -170082894 + AT_rich Low_complexity Low_complexity 1 35 0 288 200 12 50 chrX 6891666 6891746 -170082394 + L2 LINE L2 3231 3307 -6 193 373 124 17 chrX 6891844 6892021 -170082119 - L3b LINE CR1 -12 1571 1376 180 111 0 0 chrX 6892213 6892240 -170081900 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 303 53 26 chrX 6892428 6892504 -170081636 + L2 LINE L2 2559 2636 -678 7468 32 4 0 chrX 6892749 6894258 -170079882 - L1PA5 LINE L1 -4 6150 4639 26 113 0 0 chrX 6894337 6894461 -170079679 + AT_rich Low_complexity Low_complexity 1 124 0 670 285 84 45 chrX 6895997 6896176 -170077964 + L2 LINE L2 2620 2791 -522 3569 121 21 8 chrX 6896176 6896696 -170077444 - MER1A DNA MER1_type 0 527 1 670 285 84 45 chrX 6896696 6897094 -170077046 + L2 LINE L2 2791 3216 -97 1080 199 14 5 chrX 6897260 6897476 -170076664 - MER58A DNA MER1_type 0 224 7 232 295 0 0 chrX 6898257 6898318 -170075822 - MIR SINE MIR -110 152 92 519 260 78 26 chrX 6898468 6898622 -170075518 + MER5B DNA MER1_type 17 178 0 1320 180 9 0 chrX 6898630 6898852 -170075288 - MER58A DNA MER1_type 0 224 1 353 343 108 5 chrX 6899058 6899271 -170074869 + MIR SINE MIR 12 246 -16 685 281 112 42 chrX 6899895 6900421 -170073719 + MLT1L LTR MaLR 5 567 -48 384 40 0 0 chrX 6902397 6902447 -170071693 + (CA)n Simple_repeat Simple_repeat 2 51 0 228 261 22 54 chrX 6902707 6902799 -170071341 - MIR SINE MIR -111 151 63 849 219 0 12 chrX 6903837 6904001 -170070139 - MER5A DNA MER1_type -22 167 6 452 18 18 0 chrX 6904880 6904937 -170069203 + (CA)n Simple_repeat Simple_repeat 2 59 0 2050 132 7 0 chrX 6904986 6905274 -170068866 + AluSx SINE Alu 1 290 -22 765 284 36 4 chrX 6906024 6906249 -170067891 - MIR SINE MIR -16 246 15 753 29 59 0 chrX 6906907 6907009 -170067131 + L1PA13 LINE L1 6052 6159 -4 647 310 67 65 chrX 6907050 6907421 -170066719 - L2 LINE L2 -5 3267 2896 260 285 200 15 chrX 6907420 6907550 -170066590 - MIR3 SINE MIR -38 170 17 * 276 276 60 141 chrX 6907592 6907671 -170066469 - MER91B DNA MER1_type 0 190 106 2267 106 0 13 chrX 6907671 6907983 -170066157 + AluSc SINE Alu 1 308 -1 276 276 60 141 chrX 6907983 6908102 -170066038 - MER91B DNA MER1_type -84 106 8 204 135 27 0 chrX 6908477 6908514 -170065626 + (TTG)n Simple_repeat Simple_repeat 2 39 0 290 252 108 7 chrX 6908699 6908838 -170065302 + MER103 DNA DNA 8 160 -6 243 0 0 0 chrX 6909338 6909365 -170064775 + (CA)n Simple_repeat Simple_repeat 2 28 0 436 267 86 28 chrX 6909438 6909703 -170064437 - L1ME LINE L1 -361 5809 5521 2286 123 17 57 chrX 6909778 6910183 -170063957 - MLT1B LTR MaLR -1 389 1 186 270 0 0 chrX 6910311 6910385 -170063755 + (TA)n Simple_repeat Simple_repeat 1 74 0 200 200 0 0 chrX 6910408 6910443 -170063697 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 2236 141 88 13 chrX 6911593 6911991 -170062149 + MSTA LTR MaLR 1 428 0 330 349 40 7 chrX 6912776 6912925 -170061215 - MIR SINE MIR -14 248 95 1098 193 9 14 chrX 6913130 6913348 -170060792 - MER20 DNA MER1_type 0 219 3 40 49 0 0 chrX 6914861 6914922 -170059218 + AT_rich Low_complexity Low_complexity 1 61 0 1282 146 47 29 chrX 6915069 6915381 -170058759 + L1MA4 LINE L1 6004 6294 -9 7757 20 0 0 chrX 6915943 6917248 -170056892 + L1PA3 LINE L1 4851 6155 0 186 356 96 0 chrX 6917672 6917776 -170056364 - MIR SINE MIR -138 124 11 1171 261 35 61 chrX 6918085 6918626 -170055514 + L1ME3 LINE L1 5628 6154 -8 902 53 0 0 chrX 6918833 6918946 -170055194 + L1PA10 LINE L1 6056 6168 0 3921 16 0 0 chrX 6918957 6919405 -170054735 + L1PA2 LINE L1 5706 6153 -2 1154 161 22 40 chrX 6920107 6920330 -170053810 + MER20 DNA MER1_type 1 219 0 355 328 41 62 chrX 6920663 6920858 -170053282 + MIR3 SINE MIR 14 204 -4 21 0 0 0 chrX 6922793 6922814 -170051326 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chrX 6923281 6923311 -170050829 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 1127 174 33 5 chrX 6923412 6923625 -170050515 - MER20 DNA MER1_type 0 219 1 12760 27 2 2 chrX 6923743 6926123 -170048017 + L1PA3 LINE L1 3789 6170 0 1357 48 0 0 chrX 6926517 6926684 -170047456 - L1PA4 LINE L1 -2 6153 5987 801 10 0 0 chrX 6926684 6926780 -170047360 + L1PA4 LINE L1 5897 5992 -163 181 269 154 0 chrX 6926788 6926866 -170047274 - L2 LINE L2 -1612 1702 1613 1725 208 46 0 chrX 6927134 6927523 -170046617 - MLT1E2 LTR MaLR -1 625 219 2348 144 8 0 chrX 6927529 6927891 -170046249 + MLT1A1 LTR MaLR 1 365 0 1183 198 28 0 chrX 6927965 6928213 -170045927 + L1MB7 LINE L1 5914 6168 -16 231 319 121 33 chrX 6928930 6929021 -170045119 - L2 LINE L2 0 3272 3174 189 147 0 0 chrX 6929620 6929654 -170044486 + (TA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chrX 6930066 6930095 -170044045 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 181 179 0 51 chrX 6930186 6930225 -170043915 + L3 LINE CR1 1291 1327 -250 967 58 14 0 chrX 6930569 6930703 -170043437 - L1MA4 LINE L1 -40 6260 6124 402 135 0 0 chrX 6930703 6930774 -170043366 + L1MA4 LINE L1 6227 6300 0 1976 171 131 11 chrX 6931186 6931637 -170042503 - MLT1D LTR MaLR 0 505 1 1816 181 7 7 chrX 6932066 6932365 -170041775 + AluJb SINE Alu 1 299 -13 308 272 70 63 chrX 6932860 6933091 -170041049 - MIR3 SINE MIR -29 233 4 22431 165 17 13 chrX 6933580 6940104 -170034036 - L1PA11 LINE L1 -2 7610 1 233 57 29 0 chrX 6941250 6941285 -170032855 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 222 365 48 7 chrX 6941533 6941678 -170032462 + MIR SINE MIR 46 196 -66 672 292 27 0 chrX 6941992 6942177 -170031963 - MIR SINE MIR -58 204 15 1036 182 5 0 chrX 6943641 6943844 -170030296 - MER3 DNA MER1_type 0 209 6 281 284 136 11 chrX 6943870 6943958 -170030182 + L2 LINE L2 3174 3272 0 685 281 112 42 chrX 6944391 6944917 -170029223 - MLT1L LTR MaLR -48 567 5 353 343 108 5 chrX 6945541 6945754 -170028386 - MIR SINE MIR -16 246 12 1320 180 9 0 chrX 6945960 6946182 -170027958 + MER58A DNA MER1_type 1 224 0 519 260 78 26 chrX 6946190 6946344 -170027796 - MER5B DNA MER1_type 0 178 17 232 295 0 0 chrX 6946494 6946555 -170027585 + MIR SINE MIR 92 152 -110 1080 199 14 5 chrX 6947336 6947552 -170026588 + MER58A DNA MER1_type 7 224 0 670 285 84 45 chrX 6947718 6948116 -170026024 - L2 LINE L2 -97 3216 2791 3569 121 21 8 chrX 6948116 6948636 -170025504 + MER1A DNA MER1_type 1 527 0 670 285 84 45 chrX 6948636 6948815 -170025325 - L2 LINE L2 -522 2791 2620 26 113 0 0 chrX 6950351 6950475 -170023665 + AT_rich Low_complexity Low_complexity 1 124 0 7468 32 3 1 chrX 6950554 6952063 -170022077 + L1PA5 LINE L1 4639 6150 -4 195 303 53 26 chrX 6952308 6952384 -170021756 - L2 LINE L2 -678 2636 2559 180 111 0 0 chrX 6952572 6952599 -170021541 + (TG)n Simple_repeat Simple_repeat 2 28 0 193 373 124 17 chrX 6952791 6952968 -170021172 + L3b LINE CR1 1376 1571 -12 288 200 12 50 chrX 6953066 6953146 -170020994 - L2 LINE L2 -6 3307 3231 21 57 0 0 chrX 6953566 6953601 -170020539 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chrX 6954120 6954142 -170019998 + (T)n Simple_repeat Simple_repeat 1 22 0 416 255 39 39 chrX 6955507 6955660 -170018480 + MIR3 SINE MIR 41 193 -15 1148 187 9 5 chrX 6956339 6956553 -170017587 - MER20 DNA MER1_type -4 215 1 1447 227 127 55 chrX 6957208 6957720 -170016420 - L2 LINE L2 -663 2651 2103 808 151 78 0 chrX 6957721 6957900 -170016240 + L1MB5 LINE L1 5715 5907 -277 252 0 0 0 chrX 6957980 6958008 -170016132 + (TG)n Simple_repeat Simple_repeat 2 29 0 330 273 13 0 chrX 6958034 6958111 -170016029 - L2 LINE L2 -663 2651 2574 1411 169 4 4 chrX 6958151 6958412 -170015728 + L1MB5 LINE L1 5914 6174 0 789 283 116 44 chrX 6958429 6958536 -170015604 - L2 LINE L2 -1209 2105 2007 1944 152 7 13 chrX 6958536 6958875 -170015265 - AluSx SINE Alu 0 312 1 789 283 116 44 chrX 6958875 6959173 -170014967 - L2 LINE L2 -1307 2007 1671 285 318 77 12 chrX 6959816 6959986 -170014154 - L2 LINE L2 -1466 1848 1668 1877 153 7 0 chrX 6961051 6961326 -170012814 - AluJo SINE Alu -16 296 20 184 297 47 16 chrX 6961635 6961699 -170012441 + L2 LINE L2 3141 3206 -66 199 264 194 0 chrX 6961758 6961830 -170012310 + L2 LINE L2 3214 3299 -14 257 73 0 24 chrX 6961831 6961872 -170012268 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 482 225 220 17 chrX 6961936 6962109 -170012031 + MIR SINE MIR 30 237 -25 211 241 24 72 chrX 6962354 6962437 -170011703 + L2 LINE L2 3151 3229 -84 580 306 52 6 chrX 6963225 6963398 -170010742 + MIR SINE MIR 2 182 -80 525 247 110 26 chrX 6963691 6963845 -170010295 + MER5B DNA MER1_type 4 170 -8 3234 139 17 7 chrX 6963915 6964489 -170009651 + L1MB7 LINE L1 5582 6161 -23 750 208 3 15 chrX 6964858 6965166 -170008974 + MLT1A2 LTR MaLR 1 374 0 3139 195 70 17 chrX 6965552 6966333 -170007807 + MER99 DNA DNA 6 828 0 895 290 57 44 chrX 6966496 6966954 -170007186 + LTR16B LTR ERVL 1 464 0 1685 132 88 15 chrX 6967544 6967885 -170006255 + THE1C LTR MaLR 1 366 -9 187 324 152 19 chrX 6969984 6970089 -170004051 - L2 LINE L2 -9 3263 3145 345 296 102 9 chrX 6970582 6970690 -170003450 + L2 LINE L2 3196 3313 0 586 298 30 0 chrX 6970727 6970858 -170003282 + MER91C DNA MER1_type 6 140 0 191 36 36 0 chrX 6971227 6971255 -170002885 + (GGA)n Simple_repeat Simple_repeat 3 31 0 896 201 40 0 chrX 6972639 6972838 -170001302 + MER3 DNA MER1_type 2 208 -1 856 107 112 56 chrX 6973765 6973943 -170000197 - MER5A DNA MER1_type 0 189 2 237 306 116 75 chrX 6974105 6974546 -169999594 - L2 LINE L2 0 3272 2814 423 273 17 17 chrX 6975565 6975737 -169998403 + LTR16C LTR ERVL 263 434 -57 254 305 126 29 chrX 6975986 6976160 -169997980 + HAL1 LINE L1 410 600 -1907 320 243 123 88 chrX 6976268 6976790 -169997350 + HAL1 LINE L1 750 1289 -1218 521 277 152 13 chrX 6976790 6977014 -169997126 - MLT1J2 LTR MaLR 0 450 196 1249 253 88 5 chrX 6977175 6977598 -169996542 + HAL1 LINE L1 1289 1746 -761 717 128 0 56 chrX 6977740 6977865 -169996275 - FLAM_C SINE Alu -23 120 3 249 289 44 0 chrX 6977869 6977959 -169996181 + L3 LINE CR1 796 889 -688 299 306 15 22 chrX 6978421 6978555 -169995585 + L1M4 LINE L1 4883 5015 -1131 1575 125 73 62 chrX 6978754 6979043 -169995097 + AluJo SINE Alu 1 292 -20 625 280 102 41 chrX 6979938 6980332 -169993808 + L2 LINE L2 2791 3216 -97 1331 150 59 16 chrX 6981054 6981308 -169992832 + AluSc SINE Alu 9 273 -36 547 54 14 0 chrX 6981425 6981499 -169992641 + L1PA7 LINE L1 6077 6151 -3 426 248 66 15 chrX 6981781 6981918 -169992222 - MER117 DNA MER1_type -50 147 4 661 133 0 0 chrX 6983177 6983275 -169990865 - AluY SINE Alu -206 105 8 1404 208 32 26 chrX 6983326 6983705 -169990435 - L1MA7 LINE L1 -66 6225 5845 900 191 0 37 chrX 6983714 6983929 -169990211 - AluSc SINE Alu 0 309 103 336 258 89 61 chrX 6984511 6984675 -169989465 + MIR SINE MIR 19 184 -56 21 36 0 0 chrX 6984995 6985023 -169989117 + AT_rich Low_complexity Low_complexity 1 28 0 588 193 18 0 chrX 6986243 6986352 -169987788 - MER8 DNA MER2_type -125 114 4 858 230 16 11 chrX 6986363 6986554 -169987586 + MER58A DNA MER1_type 24 215 -9 238 214 43 29 chrX 6986583 6986653 -169987487 - MLT1J1 LTR MaLR -305 141 71 * 261 267 33 22 chrX 6986606 6986696 -169987444 - LTR67 LTR ERVL -396 161 71 330 251 47 76 chrX 6986745 6986916 -169987224 + MIR SINE MIR 85 250 -12 252 0 0 0 chrX 6987464 6987492 -169986648 + (A)n Simple_repeat Simple_repeat 1 28 0 237 339 0 62 chrX 6988630 6988742 -169985398 + L2 LINE L2 3000 3104 -209 189 196 0 0 chrX 6988913 6988959 -169985181 + (CA)n Simple_repeat Simple_repeat 2 47 0 832 174 47 56 chrX 6989647 6989860 -169984280 - MER20 DNA MER1_type -3 216 6 214 356 33 11 chrX 6990675 6990765 -169983375 - L2 LINE L2 -211 3061 2970 228 172 0 241 chrX 6990816 6990932 -169983208 + Tigger1 DNA MER2_type 2 89 -2329 1100 199 23 0 chrX 6990934 6991150 -169982990 + Tigger1 DNA MER2_type 67 287 -2131 269 218 11 81 chrX 6991301 6991388 -169982752 + L2 LINE L2 3231 3311 -2 236 380 70 16 chrX 6991920 6992049 -169982091 - L2 LINE L2 -1 3271 3136 290 82 9 0 chrX 6992062 6992108 -169982032 + Alu SINE Alu 252 291 -11 247 314 17 42 chrX 6992111 6992122 -169982018 - L2 LINE L2 -185 3128 3118 281 100 20 0 chrX 6992122 6992172 -169981968 + (TA)n Simple_repeat Simple_repeat 1 51 0 247 314 17 42 chrX 6992172 6992278 -169981862 - L2 LINE L2 -195 3118 3014 579 192 35 18 chrX 6992295 6992582 -169981558 + (TA)n Simple_repeat Simple_repeat 1 292 0 1387 238 11 18 chrX 6992759 6993209 -169980931 - L1M4 LINE L1 -1434 4712 4266 603 269 28 0 chrX 6993232 6993414 -169980726 - L1ME LINE L1 -392 5770 5584 1861 154 10 3 chrX 6994303 6994596 -169979544 + AluJb SINE Alu 2 296 -16 182 279 147 0 chrX 6994973 6995041 -169979099 - L2 LINE L2 -8 3264 3187 196 317 24 41 chrX 6995269 6995392 -169978748 - MIR SINE MIR -67 195 75 641 60 24 0 chrX 6995514 6995638 -169978502 + AluSc SINE Alu 194 319 0 212 322 130 55 chrX 6996414 6996560 -169977580 - MIR SINE MIR -6 256 100 717 143 23 143 chrX 6997196 6997503 -169976637 + Charlie1 DNA MER1_type 2492 2761 0 415 295 110 20 chrX 6997586 6997786 -169976354 + MIR SINE MIR 20 237 -25 411 236 55 0 chrX 6997886 6997996 -169976144 + MER63 DNA MER1_type 1 742 -94 21 0 0 0 chrX 6998660 6998681 -169975459 + AT_rich Low_complexity Low_complexity 1 21 0 900 346 152 35 chrX 6998810 6999599 -169974541 + L3 LINE CR1 593 1473 -104 579 215 15 0 chrX 6999882 7000017 -169974123 - L1MC4 LINE L1 -1078 6964 6828 1160 257 39 52 chrX 7000108 7000729 -169973411 - L1M4 LINE L1 -4577 2248 1485 461 369 31 5 chrX 7001451 7001646 -169972494 - MIR SINE MIR -36 226 27 719 239 93 11 chrX 7001646 7002008 -169972132 - LTR16A1 LTR ERVL -1 456 4 722 207 41 0 chrX 7002144 7002289 -169971851 - MER5A DNA MER1_type -38 151 1 1596 173 59 17 chrX 7002757 7003046 -169971094 + AluJo SINE Alu 1 301 -11 2005 158 16 67 chrX 7003222 7003714 -169970426 - L1MB8 LINE L1 0 6178 5712 1364 186 30 4 chrX 7004757 7005020 -169969120 + AluJb SINE Alu 40 309 -3 969 203 42 0 chrX 7005278 7005515 -169968625 + MER33 DNA MER1_type 1 247 -77 1483 229 50 14 chrX 7006449 7007194 -169966946 - MER99 DNA DNA 0 828 2 882 232 132 12 chrX 7007564 7007883 -169966257 + MLT1C LTR MaLR 111 467 0 25 51 0 0 chrX 7008173 7008212 -169965928 + AT_rich Low_complexity Low_complexity 1 39 0 484 298 68 8 chrX 7008780 7009015 -169965125 - HAL1 LINE L1 -1754 753 505 6931 126 15 5 chrX 7009016 7010147 -169963993 - Tigger1 DNA MER2_type 0 2418 1277 720 256 19 0 chrX 7012224 7012384 -169961756 - FRAM SINE Alu -13 163 1 316 324 64 20 chrX 7012448 7012652 -169961488 - L1 LINE L1 -2368 3778 3566 226 363 0 0 chrX 7013181 7013261 -169960879 + CT-rich Low_complexity Low_complexity 2 81 0 321 170 160 57 chrX 7013419 7013525 -169960615 - L2 LINE L2 0 3313 3197 21 36 0 0 chrX 7013560 7013588 -169960552 + AT_rich Low_complexity Low_complexity 1 28 0 199 204 0 23 chrX 7014234 7014278 -169959862 + MER5A DNA MER1_type 6 48 -141 349 223 68 19 chrX 7015680 7015783 -169958357 - L3 LINE CR1 -910 667 560 33 25 0 0 chrX 7016434 7016474 -169957666 + AT_rich Low_complexity Low_complexity 1 40 0 2399 77 17 31 chrX 7016474 7016826 -169957314 - L1PA7 LINE L1 -7 6147 5801 1113 250 114 45 chrX 7017252 7017725 -169956415 - MLT1H1 LTR MaLR -9 546 47 868 249 38 9 chrX 7018891 7019104 -169955036 + MER20 DNA MER1_type 1 219 0 573 201 29 14 chrX 7019466 7019605 -169954535 - AluSg/x SINE Alu -7 305 165 24 0 0 0 chrX 7019617 7019641 -169954499 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chrX 7019882 7019907 -169954233 + AT_rich Low_complexity Low_complexity 1 25 0 1787 169 0 20 chrX 7020284 7020586 -169953554 + AluJb SINE Alu 1 296 -16 74 39 0 0 chrX 7020812 7020914 -169953226 + AT_rich Low_complexity Low_complexity 1 102 0 1044 236 11 22 chrX 7021190 7021461 -169952679 + MLT1C LTR MaLR 200 467 0 305 293 0 13 chrX 7022068 7022143 -169951997 + MIR3 SINE MIR 111 184 -24 2047 99 0 3 chrX 7022437 7022749 -169951391 - L1P LINE L1 -3501 2645 2335 759 118 21 102 chrX 7022867 7023053 -169951087 + MER96B DNA MER1_type? 11 181 -236 233 167 19 0 chrX 7026782 7026836 -169947304 + CT-rich Low_complexity Low_complexity 2 56 0 575 299 0 0 chrX 7026896 7027030 -169947110 - L2 LINE L2 0 3313 3180 300 325 58 34 chrX 7027269 7027475 -169946665 - L2 LINE L2 -656 2658 2448 244 267 0 0 chrX 7027479 7027539 -169946601 - L2 LINE L2 -14 3299 3240 662 264 119 57 chrX 7027552 7028006 -169946134 - MLT1J LTR MaLR -11 500 19 182 365 21 10 chrX 7028082 7028178 -169945962 + MIR3 SINE MIR 105 201 -7 948 218 17 13 chrX 7028789 7029023 -169945117 + MER96B DNA MER1_type? 1 235 -182 2028 135 0 0 chrX 7029619 7029907 -169944233 + AluSx SINE Alu 1 288 -24 255 297 65 47 chrX 7030007 7030283 -169943857 + HAL1 LINE L1 1483 1763 -744 17338 64 4 15 chrX 7030486 7032963 -169941177 - L1P LINE L1 -1616 4530 2080 23 33 0 0 chrX 7033193 7033223 -169940917 + GC_rich Low_complexity Low_complexity 1 30 0 2076 197 41 60 chrX 7034905 7035894 -169938246 + L1M2 LINE L1 4663 5632 -680 326 226 119 0 chrX 7035896 7035980 -169938160 + L2 LINE L2 2749 2842 -472 472 223 78 10 chrX 7035982 7036085 -169938055 - L2 LINE L2 0 3313 3204 1259 242 89 28 chrX 7036092 7036517 -169937623 + L2 LINE L2 2859 3309 -4 10498 131 25 19 chrX 7036563 7038421 -169935719 + L1P LINE L1 55 1923 -4223 234 109 65 0 chrX 7139757 7139803 -169834337 + T-rich Low_complexity Low_complexity 2 50 0 21 110 0 0 chrX 7141154 7141245 -169832895 + AT_rich Low_complexity Low_complexity 1 91 0 2150 87 18 0 chrX 7141453 7141759 -169832381 + AluY SINE Alu 1 311 0 1885 157 38 0 chrX 7142141 7142434 -169831706 - AluJb SINE Alu -8 304 1 327 158 40 119 chrX 7142735 7142836 -169831304 - MER20 DNA MER1_type -57 162 70 923 28 14 35 chrX 7143062 7143203 -169830937 + (TTTC)n Simple_repeat Simple_repeat 2 139 0 7440 41 0 2 chrX 7144681 7145908 -169828232 + L1PA5 LINE L1 4930 6154 0 707 224 0 0 chrX 7145936 7146083 -169828057 + MER58B DNA MER1_type 195 341 0 1704 124 0 4 chrX 7146337 7146570 -169827570 + AluJb SINE Alu 1 232 -80 255 287 167 33 chrX 7146915 7147065 -169827075 - MIR SINE MIR 0 262 93 668 280 97 41 chrX 7147247 7147657 -169826483 - MLT1H LTR MaLR 0 549 15 258 32 0 0 chrX 7147798 7147829 -169826311 + (TG)n Simple_repeat Simple_repeat 2 32 0 190 0 0 62 chrX 7148211 7148243 -169825897 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1686 148 44 19 chrX 7148245 7148516 -169825624 - AluJo SINE Alu -30 282 5 2455 52 13 7 chrX 7150284 7150593 -169823547 + AluY SINE Alu 1 311 0 1698 157 7 38 chrX 7150797 7151090 -169823050 + AluJb SINE Alu 1 311 0 244 0 0 0 chrX 7151090 7151117 -169823023 + (TAAA)n Simple_repeat Simple_repeat 2 120 0 21 0 0 0 chrX 7151203 7151224 -169822916 + AT_rich Low_complexity Low_complexity 1 21 0 843 176 59 12 chrX 7151841 7152011 -169822129 + MER5A DNA MER1_type 10 187 -2 242 275 14 0 chrX 7152519 7152588 -169821552 + MIR3 SINE MIR 133 202 -6 189 94 0 0 chrX 7154740 7154772 -169819368 + (A)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chrX 7155186 7155207 -169818933 + AT_rich Low_complexity Low_complexity 1 21 0 609 301 26 0 chrX 7156557 7156750 -169817390 - MIR SINE MIR -62 200 3 2480 146 36 5 chrX 7156886 7157297 -169816843 - MSTB LTR MaLR -2 424 1 1660 158 37 11 chrX 7157441 7157714 -169816426 - AluJb SINE Alu -32 280 1 2257 128 0 0 chrX 7157777 7158089 -169816051 - AluSx SINE Alu 0 312 1 232 47 23 23 chrX 7158396 7158439 -169815701 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2079 111 4 0 chrX 7158441 7158720 -169815420 - AluSx SINE Alu -30 282 3 307 299 83 25 chrX 7158907 7159064 -169815076 + MER5A DNA MER1_type 24 189 0 2566 141 14 39 chrX 7159114 7159553 -169814587 + MSTA LTR MaLR 1 428 0 432 229 62 0 chrX 7159677 7159773 -169814367 - MER5A DNA MER1_type -84 105 4 192 77 0 0 chrX 7161087 7161113 -169813027 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 180 364 46 5 chrX 7161797 7161992 -169812148 + L2 LINE L2 2569 2771 -543 206 228 0 0 chrX 7162220 7162277 -169811863 + (TAA)n Simple_repeat Simple_repeat 3 59 0 227 350 134 29 chrX 7162865 7163142 -169810998 + L2 LINE L2 2877 3182 -90 231 158 85 61 chrX 7163814 7163896 -169810244 - MIR SINE MIR 0 262 179 322 311 108 20 chrX 7164372 7164520 -169809620 - MIR SINE MIR -100 162 2 565 264 19 7 chrX 7168350 7168505 -169805635 - MIR SINE MIR -49 213 57 254 231 64 0 chrX 7168710 7168788 -169805352 + MIR SINE MIR 103 185 -77 249 108 0 0 chrX 7170085 7170122 -169804018 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 337 158 66 0 chrX 7170272 7170348 -169803792 - MER53 DNA DNA -4 185 105 353 202 12 0 chrX 7170471 7170555 -169803585 - MER53 DNA DNA -104 85 1 203 278 5 96 chrX 7171173 7171360 -169802780 + CT-rich Low_complexity Low_complexity 6 175 0 183 156 0 0 chrX 7171388 7171420 -169802720 + CT-rich Low_complexity Low_complexity 5 36 0 1496 44 0 6 chrX 7172808 7172988 -169801152 + AluY SINE Alu 16 194 -117 1104 170 0 12 chrX 7173120 7173386 -169800754 + AluJb SINE Alu 6 304 -8 2389 99 3 0 chrX 7173670 7173972 -169800168 + AluSp SINE Alu 1 303 -10 3245 236 93 35 chrX 7174177 7174511 -169799629 - L1ME2 LINE L1 -9 6224 5911 3653 76 0 8 chrX 7174511 7175000 -169799140 - L1PA14 LINE L1 0 6161 5677 3245 236 93 35 chrX 7175000 7175910 -169798230 - L1ME2 LINE L1 -322 5911 5055 2484 55 7 0 chrX 7175910 7176217 -169797923 + AluY SINE Alu 1 309 -2 3245 236 93 35 chrX 7176217 7177077 -169797063 - L1ME2 LINE L1 -1178 5055 4001 2259 91 0 28 chrX 7177077 7177396 -169796744 - AluSx SINE Alu -2 310 1 755 169 26 21 chrX 7177405 7177594 -169796546 - L1ME2 LINE L1 -3057 3158 2969 621 254 41 53 chrX 7177588 7177907 -169796233 - L1ME2 LINE L1 -3898 2498 2184 * 2621 36 0 10 chrX 7178199 7178507 -169795633 + AluY SINE Alu 2 306 -5 543 138 75 0 chrX 7178555 7178649 -169795491 + L1PB4 LINE L1 6049 6149 -7 2358 60 0 0 chrX 7178943 7179269 -169794871 - AluY SINE Alu 0 326 1 198 328 0 0 chrX 7180872 7180936 -169793204 + MIR3 SINE MIR 142 205 -3 613 176 72 93 chrX 7181291 7181484 -169792656 - MER5A DNA MER1_type 0 189 1 2374 96 0 13 chrX 7181653 7181967 -169792173 + AluSq SINE Alu 1 310 -3 2274 129 0 0 chrX 7183185 7183495 -169790645 - AluSx SINE Alu -2 310 1 25 0 0 0 chrX 7183658 7183683 -169790457 + AT_rich Low_complexity Low_complexity 1 25 0 1838 144 14 0 chrX 7184718 7185002 -169789138 + AluJb SINE Alu 6 293 -19 2261 35 43 3 chrX 7185232 7185514 -169788626 + AluY SINE Alu 1 293 -18 722 209 0 8 chrX 7187150 7187284 -169786856 - FLAM_A SINE Alu 0 133 1 42058 41 1 0 chrX 7187860 7194012 -169780128 - L1PA4 LINE L1 0 6155 1 2028 130 3 17 chrX 7195447 7195746 -169778394 + AluJb SINE Alu 4 298 -14 210 213 0 0 chrX 7195746 7195785 -169778355 + CT-rich Low_complexity Low_complexity 7 48 0 224 269 60 15 chrX 7195803 7195870 -169778270 - MER5A DNA MER1_type 0 189 120 871 137 33 93 chrX 7195874 7195937 -169778203 - MER5A DNA MER1_type -2 187 122 2425 97 0 0 chrX 7195937 7196247 -169777893 + AluSg SINE Alu 1 310 0 871 137 33 93 chrX 7196247 7196366 -169777774 - MER5A DNA MER1_type -67 122 16 3447 151 15 3 chrX 7196367 7196955 -169777185 - MER50 LTR ERV1 -130 604 10 1075 188 42 14 chrX 7197039 7197252 -169776888 - MER20 DNA MER1_type 0 219 1 220 189 0 0 chrX 7198391 7198428 -169775712 + GA-rich Low_complexity Low_complexity 4 40 0 23 54 0 0 chrX 7198563 7198600 -169775540 + AT_rich Low_complexity Low_complexity 1 37 0 373 182 13 0 chrX 7200039 7200116 -169774024 - MER116 DNA Mariner -2 78 1 561 213 128 16 chrX 7201586 7201774 -169772366 + MLT1J1 LTR MaLR 3 211 -235 383 282 6 70 chrX 7201791 7201947 -169772193 + MLT1J2 LTR MaLR 245 390 -60 2705 88 11 13 chrX 7202344 7202720 -169771420 - THE1C LTR MaLR 0 375 1 1106 158 0 36 chrX 7202899 7203095 -169771045 + MER20 DNA MER1_type 31 219 0 427 390 8 0 chrX 7203096 7203219 -169770921 + L2 LINE L2 3149 3272 0 649 272 59 37 chrX 7203272 7203492 -169770648 + MIR SINE MIR 34 262 0 336 331 97 6 chrX 7203506 7203681 -169770459 - MIR SINE MIR -6 256 66 2198 88 0 0 chrX 7204010 7204284 -169769856 + AluSg1 SINE Alu 1 274 -35 189 0 0 0 chrX 7204285 7204306 -169769834 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 243 0 0 0 chrX 7204305 7204332 -169769808 + (TG)n Simple_repeat Simple_repeat 2 28 0 407 152 13 0 chrX 7204332 7204411 -169769729 + (TA)n Simple_repeat Simple_repeat 2 81 0 2112 114 0 3 chrX 7205398 7205688 -169768452 - AluSx SINE Alu -23 289 1 1684 198 27 32 chrX 7205970 7206343 -169767797 - MLT1A2 LTR MaLR 0 374 4 2040 150 0 3 chrX 7208502 7208802 -169765338 - AluJb SINE Alu -13 299 1 2411 81 3 0 chrX 7208950 7209246 -169764894 + AluSp SINE Alu 1 297 -16 481 191 106 176 chrX 7209846 7210448 -169763692 - MER34 LTR ERV1 -5 560 1 940 123 0 64 chrX 7211099 7211270 -169762870 + MER20 DNA MER1_type 1 160 -59 714 97 111 7 chrX 7212294 7212438 -169761702 - MER33 DNA MER1_type 0 363 205 4209 137 4 13 chrX 7212439 7213156 -169760984 - MER50 LTR ERV1 -23 711 1 603 159 139 20 chrX 7213156 7213307 -169760833 - MER33 DNA MER1_type -155 169 1 3489 113 116 62 chrX 7213334 7213645 -169760495 - LTR8A LTR ERV1 0 727 434 1928 156 0 7 chrX 7213645 7213940 -169760200 + AluJb SINE Alu 1 293 -19 3489 113 116 62 chrX 7213940 7214316 -169759824 - LTR8A LTR ERV1 -293 434 3 188 263 74 84 chrX 7214405 7214500 -169759640 + L2 LINE L2 2916 3009 -263 360 253 71 33 chrX 7214529 7214711 -169759429 - MER34 LTR ERV1 -1 541 353 239 263 11 32 chrX 7214992 7215087 -169759053 - MER34 LTR ERV1 -409 133 41 403 331 7 29 chrX 7215216 7215355 -169758785 + L2 LINE L2 3136 3271 -1 1964 164 10 0 chrX 7215580 7215878 -169758262 + AluJb SINE Alu 1 301 -11 719 215 6 0 chrX 7216282 7216443 -169757697 + MER33 DNA MER1_type 1 154 -102 1617 101 0 14 chrX 7216443 7216660 -169757480 - AluSq SINE Alu -19 294 81 4409 166 57 56 chrX 7216660 7217730 -169756410 - MER11C LTR ERVK 0 1071 1 686 70 0 0 chrX 7217730 7217816 -169756324 - AluSq SINE Alu -226 86 1 816 143 34 11 chrX 7217816 7217991 -169756149 + MER33 DNA MER1_type 185 363 0 437 202 11 0 chrX 7218323 7218412 -169755728 - MIR3 SINE MIR -37 171 82 464 348 17 6 chrX 7218753 7218934 -169755206 + MIR SINE MIR 32 214 -48 217 320 0 0 chrX 7219447 7219547 -169754593 + (TA)n Simple_repeat Simple_repeat 2 101 0 1883 129 46 40 chrX 7219549 7219920 -169754220 + THE1C LTR MaLR 3 375 0 308 286 61 0 chrX 7220026 7220124 -169754016 - MLT1J2 LTR MaLR -148 302 199 424 49 49 0 chrX 7220212 7220273 -169753867 - LTR23 LTR ERV1 -373 64 1 385 314 99 45 chrX 7220410 7220833 -169753307 + L1MB8 LINE L1 4942 5387 -759 614 208 0 0 chrX 7220935 7221041 -169753099 + FLAM_A SINE Alu 23 128 -14 1676 172 0 27 chrX 7221053 7221349 -169752791 + AluJb SINE Alu 1 288 -24 300 274 104 0 chrX 7221380 7221515 -169752625 + L1MB8 LINE L1 5523 5671 -450 746 333 61 12 chrX 7222030 7222456 -169751684 + LTR16A LTR ERVL 4 450 0 541 167 34 4 chrX 7222477 7222605 -169751535 - LTR49 LTR ERV1 0 642 418 405 70 0 0 chrX 7223148 7223205 -169750935 + (TG)n Simple_repeat Simple_repeat 1 57 0 4430 83 48 3 chrX 7223208 7223833 -169750307 - MER39B LTR ERV1 0 653 1 999 220 143 9 chrX 7223974 7224324 -169749816 + L1MB8 LINE L1 5777 6173 -5 2256 86 3 29 chrX 7224363 7224745 -169749395 + AluSc SINE Alu 1 374 0 2092 114 44 0 chrX 7225003 7225301 -169748839 + AluSx SINE Alu 2 312 0 1800 174 16 3 chrX 7225504 7225808 -169748332 - AluJo SINE Alu -4 308 1 29 0 0 0 chrX 7226301 7226330 -169747810 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 7226568 7226590 -169747550 + AT_rich Low_complexity Low_complexity 1 22 0 212 122 24 0 chrX 7226715 7226756 -169747384 + A-rich Low_complexity Low_complexity 3 44 0 895 126 0 16 chrX 7226920 7227047 -169747093 - FLAM_C SINE Alu -7 126 2 262 146 0 0 chrX 7227132 7227173 -169746967 - L2 LINE L2 -5 3308 3268 1572 251 109 17 chrX 7227298 7227829 -169746311 + MLT1G1 LTR MaLR 8 587 -8 1528 147 55 22 chrX 7227995 7228319 -169745821 - AluJb SINE Alu 0 333 1 274 247 14 0 chrX 7228322 7228395 -169745745 - L1ME LINE L1 -459 5662 5589 270 282 34 60 chrX 7229173 7229290 -169744850 - MIR SINE MIR -50 212 99 1016 224 9 9 chrX 7229405 7229628 -169744512 - MER58A DNA MER1_type -1 223 1 1291 277 109 35 chrX 7229694 7230419 -169743721 - L1MC4a LINE L1 -1773 6035 5257 251 227 45 0 chrX 7233347 7233435 -169740705 + (TA)n Simple_repeat Simple_repeat 2 93 0 470 276 70 22 chrX 7235138 7235323 -169738817 - MIR SINE MIR -6 256 63 1716 149 86 122 chrX 7236023 7236086 -169738054 - MLT1D LTR MaLR 0 505 441 1714 163 58 4 chrX 7236086 7236362 -169737778 + AluJo SINE Alu 1 291 -21 1716 149 86 122 chrX 7236362 7236822 -169737318 - MLT1D LTR MaLR -64 441 1 2108 139 0 0 chrX 7236833 7237127 -169737013 - AluJb SINE Alu -16 296 3 711 272 100 21 chrX 7237587 7237826 -169736314 - MIR SINE MIR -3 259 2 186 277 0 0 chrX 7238894 7238941 -169735199 - L2 LINE L2 -3 3310 3264 2899 16 0 0 chrX 7239816 7240134 -169734006 - AluYb8 SINE Alu 0 318 1 1230 261 69 22 chrX 7242020 7242426 -169731714 - L3b LINE CR1 -57 1526 1102 183 287 0 111 chrX 7242663 7242771 -169731369 - L3 LINE CR1 -801 776 681 200 233 0 33 chrX 7242934 7242994 -169731146 + CT-rich Low_complexity Low_complexity 4 61 0 2133 134 0 0 chrX 7243244 7243543 -169730597 + AluJo SINE Alu 1 299 -13 1486 159 4 0 chrX 7244350 7244602 -169729538 + L1MB8 LINE L1 5534 5786 -392 2086 124 0 25 chrX 7244603 7244917 -169729223 + AluSq SINE Alu 2 307 -6 248 288 47 88 chrX 7245312 7245482 -169728658 - MIR SINE MIR -70 192 30 251 28 28 0 chrX 7245526 7245562 -169728578 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1622 160 59 31 chrX 7245576 7245963 -169728177 + L1MB8 LINE L1 5781 6178 0 248 288 47 88 chrX 7246178 7246348 -169727792 + MIR SINE MIR 30 192 -70 2287 101 3 0 chrX 7246743 7247049 -169727091 - AluSp SINE Alu -6 307 1 2398 81 0 3 chrX 7247460 7247757 -169726383 + AluY SINE Alu 2 297 -14 461 229 23 0 chrX 7247757 7247888 -169726252 - L1MD2 LINE L1 -30 6329 6196 324 0 0 0 chrX 7250607 7250643 -169723497 + (T)n Simple_repeat Simple_repeat 1 36 0 1577 235 89 25 chrX 7251716 7252154 -169721986 - LTR16C LTR ERVL 0 491 26 881 252 95 56 chrX 7253020 7253464 -169720676 - MLT1H LTR MaLR 0 549 89 356 254 106 14 chrX 7253828 7253970 -169720170 - HAL1 LINE L1 -710 1797 1643 535 249 50 50 chrX 7254005 7254206 -169719934 + L2 LINE L2 3113 3313 0 199 255 29 88 chrX 7254278 7254354 -169719786 + L2 LINE L2 3216 3286 -27 2215 119 0 45 chrX 7254354 7254707 -169719433 + MER1B DNA MER1_type 1 337 0 199 255 29 88 chrX 7254707 7254732 -169719408 + L2 LINE L2 3286 3311 -2 989 272 106 44 chrX 7255941 7256769 -169717371 - L2 LINE L2 -9 3304 2430 605 311 116 19 chrX 7257043 7257144 -169716996 + L3 LINE CR1 1026 1116 -461 1818 169 0 7 chrX 7257144 7257446 -169716694 + AluJb SINE Alu 1 300 -12 605 311 116 19 chrX 7257446 7257662 -169716478 + L3 LINE CR1 1116 1374 -203 855 284 85 31 chrX 7257675 7258097 -169716043 + MLT1J2 LTR MaLR 6 450 0 245 276 26 0 chrX 7258101 7258177 -169715963 + L3 LINE CR1 1383 1460 -117 1533 204 127 31 chrX 7258208 7258722 -169715418 - LTR48B LTR ERV1 0 644 82 326 237 6 0 chrX 7258782 7258874 -169715266 - MER34 LTR ERV1 -446 96 3 245 233 211 0 chrX 7260073 7260206 -169713934 - Zaphod DNA AcHobo -3283 748 588 525 244 49 44 chrX 7260212 7260417 -169713723 - MLT1J2 LTR MaLR -244 206 1 306 244 12 12 chrX 7260770 7260856 -169713284 - MLT1L LTR MaLR -110 505 420 227 286 31 57 chrX 7262894 7263086 -169711054 - LTR16C LTR ERVL 0 491 305 2346 133 50 0 chrX 7263484 7263868 -169710272 + MER57A LTR ERV1 1 403 0 246 336 53 0 chrX 7263887 7264000 -169710140 - MIR3 SINE MIR -86 122 4 38733 64 12 2 chrX 7264904 7270986 -169703154 - L1PA5 LINE L1 0 6154 11 778 187 18 0 chrX 7271101 7271267 -169702873 - L1MD3 LINE L1 -5 7990 7822 1842 101 0 0 chrX 7271422 7271659 -169702481 - AluSg/x SINE Alu -5 307 71 264 59 0 0 chrX 7272151 7272185 -169701955 + (CA)n Simple_repeat Simple_repeat 1 34 0 297 0 0 0 chrX 7272253 7272286 -169701854 + (TA)n Simple_repeat Simple_repeat 2 34 0 1096 233 64 86 chrX 7275195 7275332 -169698808 - MER34 LTR ERV1 -4 538 400 1954 131 0 21 chrX 7275332 7275622 -169698518 + AluJo SINE Alu 15 298 -14 1096 233 64 86 chrX 7275622 7276034 -169698106 - MER34 LTR ERV1 -142 400 1 276 264 0 0 chrX 7276080 7276133 -169698007 + MER45 DNA AcHobo 1 53 -125 1031 174 28 19 chrX 7276143 7276356 -169697784 - MER58 DNA MER1_type -126 215 1 1031 156 12 0 chrX 7276370 7276537 -169697603 + MER5A DNA MER1_type 21 189 0 901 166 12 12 chrX 7276547 7276710 -169697430 + MER5B DNA MER1_type 3 165 -13 353 187 17 0 chrX 7276722 7276797 -169697343 - MIR SINE MIR -65 143 67 912 230 87 9 chrX 7277561 7277791 -169696349 + MIR SINE MIR 15 262 0 328 330 37 0 chrX 7277830 7277939 -169696201 - MIR SINE MIR -148 114 2 985 244 125 72 chrX 7278099 7278995 -169695145 + L2 LINE L2 2362 3307 -6 1903 145 7 10 chrX 7279571 7279867 -169694273 + AluSx SINE Alu 1 295 -17 201 74 0 0 chrX 7280289 7280316 -169693824 + (TTATA)n Simple_repeat Simple_repeat 4 30 0 522 229 123 29 chrX 7281952 7282196 -169691944 - HAL1 LINE L1 0 2507 2241 573 284 88 57 chrX 7282229 7282569 -169691571 - MLT1J LTR MaLR -7 504 141 976 161 0 0 chrX 7282569 7282760 -169691380 + FAM SINE Alu 1 56 0 573 284 88 57 chrX 7282760 7282906 -169691234 - MLT1J LTR MaLR -370 141 1 261 263 44 18 chrX 7282922 7283036 -169691104 - HAL1 LINE L1 -389 2118 2002 866 269 69 19 chrX 7283084 7283463 -169690677 - HAL1 LINE L1 -607 1900 1503 27 0 0 0 chrX 7283526 7283553 -169690587 + AT_rich Low_complexity Low_complexity 1 27 0 1505 160 183 9 chrX 7283642 7283980 -169690160 + MLT2C1 LTR ERVL 1 397 0 41 58 0 0 chrX 7283989 7284058 -169690082 + AT_rich Low_complexity Low_complexity 1 69 0 1575 160 0 26 chrX 7284192 7284460 -169689680 + AluJb SINE Alu 35 295 -17 242 323 97 0 chrX 7284839 7284932 -169689208 - MIR SINE MIR -76 132 31 231 182 0 0 chrX 7285333 7285377 -169688763 + MER116 DNA Mariner 11 54 -26 1816 148 16 23 chrX 7285717 7286106 -169688034 - AluJb SINE Alu 0 387 1 1189 170 18 22 chrX 7286298 7286521 -169687619 - MLT1A1 LTR MaLR -11 354 133 268 350 56 33 chrX 7286861 7287041 -169687099 - MER5A DNA MER1_type 0 189 6 1210 134 31 0 chrX 7287041 7287235 -169686905 + MER20 DNA MER1_type 20 219 0 22 35 0 0 chrX 7288799 7288828 -169685312 + GC_rich Low_complexity Low_complexity 1 29 0 304 309 54 27 chrX 7291745 7291894 -169682246 - MIR SINE MIR -50 212 60 265 310 69 26 chrX 7294940 7295056 -169679084 + L2 LINE L2 3136 3256 -16 378 94 0 0 chrX 7295268 7295332 -169678808 + (TC)n Simple_repeat Simple_repeat 1 64 0 297 0 0 0 chrX 7295332 7295365 -169678775 + (TA)n Simple_repeat Simple_repeat 1 33 0 2446 40 10 7 chrX 7298487 7298786 -169675354 + AluY SINE Alu 1 300 -11 2203 81 7 55 chrX 7299163 7299473 -169674667 - AluSq SINE Alu -18 295 1 1668 52 64 0 chrX 7299565 7299798 -169674342 + L1PB1 LINE L1 5534 5781 -370 261 180 0 0 chrX 7299799 7299849 -169674291 + (TG)n Simple_repeat Simple_repeat 2 51 0 2527 103 0 5 chrX 7299867 7300235 -169673905 + L1PB1 LINE L1 5785 6150 -1 223 248 8 39 chrX 7300241 7300253 -169673887 + A-rich Low_complexity Low_complexity 2 13 -113 217 49 0 49 chrX 7300253 7300294 -169673846 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 223 248 8 39 chrX 7300294 7300410 -169673730 + A-rich Low_complexity Low_complexity 13 126 0 238 179 36 0 chrX 7300449 7300505 -169673635 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chrX 7300723 7300745 -169673395 + AT_rich Low_complexity Low_complexity 1 22 0 574 276 108 20 chrX 7301061 7301311 -169672829 - L3 LINE CR1 -514 1063 792 2093 145 22 11 chrX 7301711 7302076 -169672064 - MER31-int LTR ERV1 -4400 536 168 26 30 0 0 chrX 7302249 7302282 -169671858 + AT_rich Low_complexity Low_complexity 1 33 0 210 64 21 43 chrX 7302784 7302831 -169671309 + (AGGGGG)n Simple_repeat Simple_repeat 5 50 0 207 325 98 32 chrX 7304109 7304232 -169669908 - L2 LINE L2 -3 3269 3139 1127 153 0 6 chrX 7304248 7304418 -169669722 + AluJb SINE Alu 1 169 -143 230 224 0 52 chrX 7304578 7304636 -169669504 - L2 LINE L2 -17 3296 3242 2198 47 18 4 chrX 7304852 7305161 -169668979 - AluY SINE Alu 0 313 1 1943 106 7 18 chrX 7305161 7305466 -169668674 - AluSq SINE Alu 0 313 38 3555 113 25 7 chrX 7305470 7306034 -169668106 - Tigger3b DNA MER2_type -657 574 1 474 191 38 38 chrX 7306034 7306164 -169667976 + MER34C LTR ERV1 456 585 0 1743 168 135 25 chrX 7306164 7306559 -169667581 + MLT1D LTR MaLR 67 505 0 188 279 49 0 chrX 7306569 7306630 -169667510 - L2 LINE L2 -944 2370 2307 325 328 62 62 chrX 7306766 7306854 -169667286 - L2 LINE L2 -1180 2134 2047 1713 167 46 7 chrX 7306854 7307136 -169667004 - AluJb SINE Alu -18 294 2 325 328 62 62 chrX 7307136 7307562 -169666578 - L2 LINE L2 -1266 2048 1620 2179 114 0 25 chrX 7307615 7307930 -169666210 - AluSx SINE Alu -5 307 1 2178 116 36 18 chrX 7308392 7308721 -169665419 - MER1B DNA MER1_type -2 335 1 475 329 121 26 chrX 7309801 7310114 -169664026 + L2 LINE L2 2397 2739 -575 346 187 93 173 chrX 7310182 7310471 -169663669 + MER5C DNA MER1_type 14 279 -45 809 201 65 0 chrX 7310495 7310664 -169663476 + MER5A DNA MER1_type 10 189 0 630 183 36 29 chrX 7310698 7310835 -169663305 + MER3 DNA MER1_type 72 209 0 32 26 0 0 chrX 7311668 7311707 -169662433 + AT_rich Low_complexity Low_complexity 1 39 0 2469 88 0 0 chrX 7312103 7312410 -169661730 - AluSx SINE Alu -5 307 1 11899 27 6 10 chrX 7312471 7314649 -169659491 + L1PA4 LINE L1 3971 6154 -1 24 85 0 0 chrX 7315008 7315067 -169659073 + AT_rich Low_complexity Low_complexity 1 59 0 252 122 0 0 chrX 7315129 7315170 -169658970 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 498 75 0 0 chrX 7315170 7315237 -169658903 + (TCCCC)n Simple_repeat Simple_repeat 4 70 0 754 139 47 31 chrX 7315246 7315375 -169658765 - FLAM_C SINE Alu -2 131 1 282 281 165 16 chrX 7315631 7315752 -169658388 - MIR SINE MIR -96 166 28 23 54 0 0 chrX 7315868 7315905 -169658235 + AT_rich Low_complexity Low_complexity 1 37 0 232 365 103 19 chrX 7316059 7316215 -169657925 - L2 LINE L2 0 3272 3104 1007 157 37 42 chrX 7316250 7316467 -169657673 + MER20 DNA MER1_type 1 216 -3 981 108 23 0 chrX 7316513 7316643 -169657497 + AluJb SINE Alu 1 133 -179 265 42 21 42 chrX 7316643 7316691 -169657449 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 937 185 0 0 chrX 7316703 7316854 -169657286 + AluJb SINE Alu 129 279 -33 225 0 0 0 chrX 7316854 7316879 -169657261 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1798 117 51 18 chrX 7317010 7317380 -169656760 + Tigger3(Golem) DNA MER2_type 1 3028 -1 236 318 234 7 chrX 7317521 7317815 -169656325 + L2 LINE L2 2715 3060 -212 740 145 192 47 chrX 7317833 7318028 -169656112 - AluJo SINE Alu 0 305 86 372 279 94 41 chrX 7318035 7318279 -169655861 + LTR33 LTR ERVL 25 281 -240 230 262 24 0 chrX 7318309 7318393 -169655747 + LTR33 LTR ERVL 373 458 -63 366 331 44 7 chrX 7318817 7318953 -169655187 - L2 LINE L2 -7 3265 3125 210 71 0 0 chrX 7319444 7319472 -169654668 + (TG)n Simple_repeat Simple_repeat 1 28 0 925 240 83 0 chrX 7319738 7319942 -169654198 - MER58A DNA MER1_type 0 224 4 21 0 0 0 chrX 7320209 7320230 -169653910 + AT_rich Low_complexity Low_complexity 1 21 0 2093 103 22 3 chrX 7320250 7320569 -169653571 + L1MB7 LINE L1 5841 6165 -19 269 200 0 33 chrX 7320600 7320660 -169653480 + L1ME LINE L1 5551 5608 -513 245 284 95 21 chrX 7320916 7321011 -169653129 - MIR SINE MIR -48 214 113 223 298 235 9 chrX 7321145 7321460 -169652680 + L2 LINE L2 2578 2963 -351 206 256 13 0 chrX 7321586 7321664 -169652476 + CT-rich Low_complexity Low_complexity 4 82 0 217 272 291 10 chrX 7321670 7321773 -169652367 + L2 LINE L2 3141 3272 0 1087 157 13 57 chrX 7322664 7322893 -169651247 - MER20 DNA MER1_type 0 219 1 213 255 41 92 chrX 7326272 7326370 -169647770 + MIR3 SINE MIR 70 162 -46 230 220 0 51 chrX 7326370 7326429 -169647711 + GA-rich Low_complexity Low_complexity 3 58 0 335 264 31 78 chrX 7327459 7327588 -169646552 - MIR SINE MIR -108 154 32 1857 240 103 20 chrX 7327676 7328222 -169645918 + MLT1E LTR MaLR 1 591 -2 21 0 0 0 chrX 7328477 7328498 -169645642 + AT_rich Low_complexity Low_complexity 1 21 0 232 339 126 24 chrX 7329117 7329244 -169644896 + MIR SINE MIR 27 166 -96 5778 114 18 10 chrX 7329249 7329566 -169644574 + L1PA16 LINE L1 4872 5185 -981 2133 113 7 13 chrX 7329566 7329876 -169644264 + AluSc SINE Alu 1 308 -1 5778 114 18 10 chrX 7329876 7330864 -169643276 + L1PA16 LINE L1 5185 6166 0 21 0 0 0 chrX 7330901 7330922 -169643218 + AT_rich Low_complexity Low_complexity 1 21 0 2436 82 0 0 chrX 7331012 7331315 -169642825 - AluSg SINE Alu -7 303 1 3706 194 25 55 chrX 7331329 7332734 -169641406 - L1MCa LINE L1 -4861 1046 337 7789 17 0 2 chrX 7332734 7333944 -169640196 - L1PA3 LINE L1 0 6155 4947 3706 194 25 55 chrX 7333944 7334266 -169639874 - L1MCa LINE L1 -5570 337 7 2317 102 0 3 chrX 7334626 7334921 -169639219 + AluSx SINE Alu 1 294 -18 200 270 132 53 chrX 7334921 7334963 -169639177 + L3 LINE CR1 1079 1116 -461 2521 171 85 43 chrX 7334963 7335561 -169638579 - MLT1E2 LTR MaLR -2 624 2 200 270 132 53 chrX 7335561 7335707 -169638433 + L3 LINE CR1 1116 1282 -295 399 302 60 9 chrX 7335721 7335837 -169638303 - L2 LINE L2 -3 3269 3148 6860 33 8 0 chrX 7336318 7337619 -169636521 + L1PA5 LINE L1 4868 6180 0 4167 138 19 19 chrX 7337659 7338361 -169635779 - L1MB4 LINE L1 -1 6179 5475 261 0 0 0 chrX 7338361 7338390 -169635750 + (TG)n Simple_repeat Simple_repeat 2 30 0 4167 138 19 19 chrX 7338390 7338445 -169635695 - L1MB4 LINE L1 -704 5476 5422 379 265 29 10 chrX 7338659 7338761 -169635379 + L3 LINE CR1 1405 1508 -69 524 273 162 15 chrX 7338987 7339185 -169634955 - MIR SINE MIR -5 257 31 198 171 0 0 chrX 7340140 7340181 -169633959 + CT-rich Low_complexity Low_complexity 1 41 0 336 249 117 121 chrX 7340987 7341244 -169632896 - MIR SINE MIR -6 256 1 1703 175 24 15 chrX 7341524 7341862 -169632278 - MER58B DNA MER1_type 0 341 1 620 174 16 0 chrX 7342075 7342196 -169631944 - L1MD2 LINE L1 0 6359 6237 324 102 0 0 chrX 7342241 7342290 -169631850 + (TG)n Simple_repeat Simple_repeat 1 49 0 2201 186 32 0 chrX 7342315 7342756 -169631384 - L1MD1 LINE L1 -183 6059 5605 200 252 30 126 chrX 7342893 7343028 -169631112 - MIR SINE MIR -63 145 24 617 262 12 18 chrX 7343616 7343780 -169630360 + MER5A DNA MER1_type 11 173 -16 33 0 0 0 chrX 7343828 7343861 -169630279 + AT_rich Low_complexity Low_complexity 1 33 0 959 103 7 0 chrX 7345158 7345304 -169628836 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 2010 118 4 0 chrX 7345304 7345583 -169628557 - AluSx SINE Alu -32 280 1 396 289 191 36 chrX 7346398 7346623 -169627517 - MIR SINE MIR -1 261 2 222 176 0 0 chrX 7346806 7346857 -169627283 + CT-rich Low_complexity Low_complexity 2 52 0 276 91 0 0 chrX 7346869 7346913 -169627227 + (GA)n Simple_repeat Simple_repeat 1 44 0 214 296 0 0 chrX 7349444 7349498 -169624642 + CT-rich Low_complexity Low_complexity 1 54 0 200 94 0 31 chrX 7349663 7349695 -169624445 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 6622 76 23 3 chrX 7349768 7351166 -169622974 + L1PA11 LINE L1 4754 6174 0 183 80 0 0 chrX 7351279 7351304 -169622836 + (TG)n Simple_repeat Simple_repeat 2 26 0 209 173 39 0 chrX 7351307 7351359 -169622781 + (TA)n Simple_repeat Simple_repeat 2 55 0 400 317 122 35 chrX 7353536 7353766 -169620374 - MIR SINE MIR 0 262 13 325 367 53 20 chrX 7353822 7354067 -169620073 + L2 LINE L2 2422 2674 -640 462 133 0 0 chrX 7354073 7354148 -169619992 + MADE1 DNA Mariner 6 80 0 244 280 156 82 chrX 7354271 7354553 -169619587 + L2 LINE L2 3008 3310 -3 244 276 13 13 chrX 7354558 7354634 -169619506 + CT-rich Low_complexity Low_complexity 1 76 0 433 285 0 0 chrX 7354894 7355017 -169619123 + HsTC2 DNA Tc2 79 201 -1697 267 54 0 0 chrX 7355136 7355173 -169618967 + (GA)n Simple_repeat Simple_repeat 2 38 0 355 277 36 0 chrX 7355204 7355316 -169618824 + HsTC2 DNA Tc2 1017 1132 -766 231 145 26 79 chrX 7355538 7355614 -169618526 + HsTC2 DNA Tc2 1669 1740 -158 377 206 122 8 chrX 7355678 7355809 -169618331 + HsTC2 DNA Tc2 1745 1890 -8 369 309 54 30 chrX 7356496 7356664 -169617476 - MIR SINE MIR -6 256 85 23 54 0 0 chrX 7357167 7357204 -169616936 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chrX 7357372 7357394 -169616746 + AT_rich Low_complexity Low_complexity 1 22 0 253 241 96 36 chrX 7358044 7358127 -169616013 + L2 LINE L2 3182 3269 -3 24 0 0 0 chrX 7360292 7360316 -169613824 + AT_rich Low_complexity Low_complexity 1 24 0 258 393 61 0 chrX 7362596 7362759 -169611381 - MIR SINE MIR -56 206 34 2305 109 0 0 chrX 7363378 7363689 -169610451 - AluSx SINE Alu -1 311 1 230 295 162 29 chrX 7364157 7364262 -169609878 + MIR3 SINE MIR 5 123 -85 363 351 8 0 chrX 7364327 7364458 -169609682 - L2 LINE L2 -1 3312 3181 528 300 24 15 chrX 7365064 7365352 -169608788 - MLT1I LTR MaLR 0 409 83 417 324 60 42 chrX 7365734 7365950 -169608190 + L3 LINE CR1 607 826 -751 182 219 203 16 chrX 7366127 7366191 -169607949 + L3 LINE CR1 1068 1143 -434 992 184 87 5 chrX 7366227 7366434 -169607706 - MER58A DNA MER1_type 0 224 1 189 0 0 0 chrX 7366587 7366608 -169607532 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 217 364 17 17 chrX 7366866 7366984 -169607156 - MIR SINE MIR -61 147 30 988 284 61 77 chrX 7367320 7367397 -169606743 + L2 LINE L2 2537 2614 -699 999 168 42 37 chrX 7367397 7367611 -169606529 - MER20 DNA MER1_type -4 215 1 988 284 61 77 chrX 7367611 7367725 -169606415 + L2 LINE L2 2614 2728 -585 306 0 0 0 chrX 7367725 7367759 -169606381 + (CA)n Simple_repeat Simple_repeat 2 35 0 2806 56 0 6 chrX 7367759 7368118 -169606022 + L1PB1 LINE L1 5793 6149 -2 988 284 61 77 chrX 7368118 7368381 -169605759 + L2 LINE L2 2727 2967 -346 1886 203 35 60 chrX 7368381 7368899 -169605241 + MLT1D LTR MaLR 1 505 0 988 284 61 77 chrX 7368899 7369079 -169605061 + L2 LINE L2 2967 3148 -165 184 244 22 0 chrX 7370841 7370886 -169603254 - L2 LINE L2 -4 3268 3223 1693 187 3 16 chrX 7370985 7371300 -169602840 - AluJb SINE Alu -1 311 1 1481 189 6 6 chrX 7371352 7371664 -169602476 + L1MD3 LINE L1 7474 7785 -210 1105 180 0 3 chrX 7371665 7371876 -169602264 + AluJb SINE Alu 2 283 -29 617 13 0 25 chrX 7371891 7371970 -169602170 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 679 205 78 0 chrX 7371970 7372175 -169601965 + L1MD3 LINE L1 7775 7995 0 214 270 30 20 chrX 7372228 7372328 -169601812 + (CAGAGA)n Simple_repeat Simple_repeat 6 106 0 218 194 48 0 chrX 7373805 7373867 -169600273 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 470 99 33 211 chrX 7373872 7374024 -169600116 - MER20 DNA MER1_type -5 214 90 24 53 0 0 chrX 7374038 7374076 -169600064 + AT_rich Low_complexity Low_complexity 1 38 0 266 289 40 0 chrX 7375156 7375232 -169598908 + L2 LINE L2 3230 3308 -5 636 352 36 0 chrX 7375270 7375489 -169598651 + MIR SINE MIR 19 245 -17 240 312 113 28 chrX 7375709 7375850 -169598290 + MIR SINE MIR 86 238 -24 210 225 0 0 chrX 7376327 7376367 -169597773 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 765 199 8 0 chrX 7377828 7377959 -169596181 + FLAM_A SINE Alu 1 132 -1 2423 152 79 31 chrX 7377984 7378466 -169595674 + MLT1D LTR MaLR 1 505 0 358 291 26 17 chrX 7378590 7378707 -169595433 + MER5A DNA MER1_type 29 146 -43 2146 204 77 54 chrX 7378710 7378970 -169595170 - MLT1E LTR MaLR 0 593 341 830 125 0 21 chrX 7378970 7379114 -169595026 - L1PB1 LINE L1 0 6151 6011 2146 204 77 54 chrX 7379114 7379412 -169594728 - MLT1E LTR MaLR -252 341 22 448 269 174 50 chrX 7380002 7380359 -169593781 + MLT1J2 LTR MaLR 46 446 -4 254 245 157 20 chrX 7380998 7381100 -169593040 - MIR SINE MIR -129 133 18 206 287 61 12 chrX 7381252 7381416 -169592724 + (TATATG)n Simple_repeat Simple_repeat 3 174 0 182 250 163 25 chrX 7381428 7381508 -169592632 - MIR SINE MIR -147 115 25 213 39 0 0 chrX 7381871 7381897 -169592243 + (TA)n Simple_repeat Simple_repeat 2 27 0 198 103 0 0 chrX 7382005 7382034 -169592106 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 888 165 198 0 chrX 7382399 7382581 -169591559 - MER20 DNA MER1_type 0 219 2 259 264 0 66 chrX 7385374 7385465 -169588675 + L2 LINE L2 2545 2629 -685 2287 200 49 9 chrX 7385496 7386027 -169588113 - L1MB8 LINE L1 -13 6165 5614 335 125 0 16 chrX 7386184 7386248 -169587892 - L1MA5 LINE L1 -6 6294 6232 396 343 67 46 chrX 7386278 7386561 -169587579 + L2 LINE L2 2688 2976 -338 572 279 102 26 chrX 7386563 7386789 -169587351 + MIR SINE MIR 7 249 -13 259 389 94 45 chrX 7386777 7387042 -169587098 + L2 LINE L2 2987 3264 -8 * 1080 255 107 41 chrX 7387052 7387539 -169586601 + LTR33 LTR ERVL 1 519 -2 2501 145 20 92 chrX 7388432 7388976 -169585164 - MLT1D LTR MaLR 0 505 1 29 0 0 0 chrX 7388978 7389007 -169585133 + AT_rich Low_complexity Low_complexity 1 29 0 208 274 48 48 chrX 7389731 7389815 -169584325 - L2 LINE L2 -52 3220 3137 601 196 8 15 chrX 7390022 7390155 -169583985 + Charlie7 DNA MER1_type 5 136 -2476 1119 212 83 50 chrX 7390173 7390649 -169583491 - MER39 LTR ERV1 -33 674 1 632 293 94 17 chrX 7390740 7391091 -169583049 + Charlie7 DNA MER1_type 346 723 -1889 235 221 172 0 chrX 7391082 7391204 -169582936 + Charlie7 DNA MER1_type 2416 2558 -54 * 417 39 0 0 chrX 7392534 7392585 -169581555 + (TG)n Simple_repeat Simple_repeat 1 51 0 428 284 25 50 chrX 7394020 7394221 -169579919 + MIR SINE MIR 1 196 -66 217 284 0 63 chrX 7394288 7394383 -169579757 - MIR3 SINE MIR -38 170 82 3855 193 30 42 chrX 7395524 7396419 -169577721 - L1M4 LINE L1 -5149 1393 510 646 319 32 30 chrX 7396608 7397009 -169577131 + MLT1I LTR MaLR 2 403 -6 26734 96 11 14 chrX 7397504 7401605 -169572535 + L1P LINE L1 11 4101 -2045 2149 53 0 0 chrX 7401605 7401870 -169572270 + L1PA6 LINE L1 5889 6154 0 22 56 0 0 chrX 7402151 7402187 -169571953 + AT_rich Low_complexity Low_complexity 1 36 0 2511 122 11 82 chrX 7402244 7402705 -169571435 + MSTC LTR MaLR 1 428 0 323 275 12 69 chrX 7402863 7403023 -169571117 - L1MC4a LINE L1 -1870 5938 5788 2098 105 0 66 chrX 7403252 7403586 -169570554 + AluSx SINE Alu 1 312 0 746 216 18 48 chrX 7403734 7403961 -169570179 - MER74A LTR ERVL 0 558 339 2019 229 54 0 chrX 7404148 7404685 -169569455 - L1ME1 LINE L1 -122 6044 5479 266 302 57 19 chrX 7405068 7405174 -169568966 + MLT1J LTR MaLR 378 487 -24 290 330 141 10 chrX 7405494 7405700 -169568440 + MIR SINE MIR 12 244 -18 539 315 25 38 chrX 7406306 7406544 -169567596 + MIR SINE MIR 18 252 -10 * 609 284 37 11 chrX 7406524 7406714 -169567426 - MIR SINE MIR -48 214 20 21 0 0 0 chrX 7407173 7407194 -169566946 + AT_rich Low_complexity Low_complexity 1 21 0 502 208 20 25 chrX 7407558 7408128 -169566012 + (TA)n Simple_repeat Simple_repeat 1 567 0 261 261 29 0 chrX 7408128 7408197 -169565943 + (TATG)n Simple_repeat Simple_repeat 4 74 0 597 165 23 23 chrX 7408198 7408416 -169565724 + (TA)n Simple_repeat Simple_repeat 1 218 0 451 230 60 0 chrX 7408840 7408940 -169565200 + MER81 DNA DNA 1 106 -8 959 281 56 42 chrX 7410000 7410359 -169563781 + LTR16B LTR ERVL 3 366 -98 330 317 17 17 chrX 7412300 7412420 -169561720 + MIR3 SINE MIR 78 197 -11 2174 84 28 0 chrX 7412491 7412775 -169561365 - AluSg SINE Alu -18 292 1 239 173 19 0 chrX 7414342 7414394 -169559746 + (CA)n Simple_repeat Simple_repeat 2 54 0 462 293 96 21 chrX 7414530 7414769 -169559371 + MIR SINE MIR 4 260 -2 353 246 93 0 chrX 7415195 7415313 -169558827 + MER103 DNA DNA 5 133 -33 233 296 17 43 chrX 7415540 7415655 -169558485 + 7SK RNA RNA 10 121 -72 220 297 20 40 chrX 7415848 7415949 -169558191 - MER5A DNA MER1_type -1 188 90 196 304 133 30 chrX 7415849 7415984 -169558156 + MER5A DNA MER1_type 17 165 -24 * 215 336 115 26 chrX 7416004 7416117 -169558023 + MER5B DNA MER1_type 10 132 -46 1060 80 0 7 chrX 7416945 7417095 -169557045 - L1PB1 LINE L1 0 6151 6003 1545 183 123 144 chrX 7417138 7417942 -169556198 - L1MC4a LINE L1 -15 7793 7007 261 111 0 0 chrX 7418092 7418128 -169556012 + Alu SINE Alu 1 36 -272 2113 125 13 0 chrX 7418192 7418497 -169555643 + AluSx SINE Alu 1 309 -3 557 266 8 0 chrX 7418903 7419031 -169555109 - MER58B DNA MER1_type -16 325 197 2408 72 0 0 chrX 7421442 7421735 -169552405 - AluY SINE Alu -18 293 1 324 326 49 56 chrX 7421940 7422084 -169552056 + L2 LINE L2 3115 3257 -15 2428 183 23 2 chrX 7423240 7423727 -169550413 - L1MB7 LINE L1 -19 6165 5669 365 298 16 32 chrX 7423889 7424013 -169550127 + MER5A DNA MER1_type 68 189 0 496 186 20 20 chrX 7424028 7424130 -169550010 + MER5A DNA MER1_type 9 110 -79 4477 125 15 4 chrX 7424148 7425141 -169548999 + L1PA16 LINE L1 4886 5892 -274 690 231 0 66 chrX 7425165 7425347 -169548793 + MER5B DNA MER1_type 5 174 -4 1795 110 140 10 chrX 7425371 7425671 -169548469 - MER1B DNA MER1_type 0 339 1 346 257 23 12 chrX 7425791 7425962 -169548178 + GA-rich Low_complexity Low_complexity 3 175 0 2627 219 53 55 chrX 7426078 7426835 -169547305 - L1ME1 LINE L1 -4 6162 5408 449 278 97 32 chrX 7426904 7427213 -169546927 - L1MC5 LINE L1 -29 7932 7604 1580 11 0 0 chrX 7427741 7427920 -169546220 + L1PA4 LINE L1 5977 6155 0 342 0 0 0 chrX 7427956 7427994 -169546146 + (TG)n Simple_repeat Simple_repeat 2 39 0 957 202 25 15 chrX 7429504 7429702 -169544438 - MER20 DNA MER1_type -14 205 6 1089 264 82 24 chrX 7431059 7431613 -169542527 - L2 LINE L2 -22 3291 2703 826 156 17 165 chrX 7431617 7431854 -169542286 + MER20 DNA MER1_type 1 202 -17 805 294 184 24 chrX 7431854 7432266 -169541874 - L2 LINE L2 -607 2707 2230 297 305 74 68 chrX 7432276 7432466 -169541674 - LTR67 LTR ERVL -10 547 357 1230 272 171 8 chrX 7432738 7433213 -169540927 - L2 LINE L2 -1080 2234 1683 24 53 0 0 chrX 7433276 7433314 -169540826 + AT_rich Low_complexity Low_complexity 1 38 0 315 300 0 30 chrX 7433451 7433551 -169540589 - L1MC4 LINE L1 -1342 6700 6604 7736 177 25 4 chrX 7434105 7435608 -169538532 - L1 LINE L1 -869 5277 3743 703 261 48 0 chrX 7435660 7435867 -169538273 + MER46C DNA MER2_type 113 329 -9 2067 119 0 33 chrX 7436536 7436839 -169537301 + AluSx SINE Alu 1 293 -19 23 68 0 0 chrX 7438454 7438498 -169535642 + AT_rich Low_complexity Low_complexity 1 44 0 227 241 13 57 chrX 7439714 7439872 -169534268 - L1M4c LINE L1 -3819 2563 2413 21 57 0 0 chrX 7440260 7440295 -169533845 + AT_rich Low_complexity Low_complexity 1 35 0 643 306 55 55 chrX 7440387 7440789 -169533351 - L1M4c LINE L1 -852 1891 1288 1882 162 94 110 chrX 7440796 7441297 -169532843 - L1MDa LINE L1 -6031 509 17 704 92 0 0 chrX 7441949 7442047 -169532093 - AluSc SINE Alu -211 98 1 1843 274 83 21 chrX 7442395 7443170 -169530970 - HAL1 LINE L1 -396 2111 1289 590 259 156 18 chrX 7443331 7443555 -169530585 + MLT1J2 LTR MaLR 196 450 0 399 253 113 88 chrX 7443555 7444058 -169530082 - HAL1 LINE L1 -1218 1289 774 309 304 122 33 chrX 7444178 7444359 -169529781 - HAL1 LINE L1 -1901 606 410 554 306 41 59 chrX 7444608 7444997 -169529143 - LTR16C LTR ERVL -57 434 53 212 306 116 75 chrX 7445799 7446240 -169527900 + L2 LINE L2 2814 3272 0 846 107 112 56 chrX 7446402 7446580 -169527560 + MER5A DNA MER1_type 2 189 0 907 206 40 0 chrX 7447507 7447706 -169526434 - MER3 DNA MER1_type -1 208 2 191 36 36 0 chrX 7449090 7449118 -169525022 + (TCC)n Simple_repeat Simple_repeat 3 31 0 583 298 30 0 chrX 7449487 7449618 -169524522 + MER91C DNA MER1_type 1 135 -5 344 296 102 9 chrX 7449655 7449763 -169524377 - L2 LINE L2 0 3313 3196 186 324 152 19 chrX 7450256 7450361 -169523779 + L2 LINE L2 3145 3263 -9 1812 132 88 15 chrX 7452459 7452800 -169521340 - THE1C LTR MaLR -9 366 1 899 290 57 44 chrX 7453390 7453848 -169520292 - LTR16B LTR ERVL 0 464 1 3368 195 70 17 chrX 7454011 7454792 -169519348 - MER99 DNA DNA 0 828 6 823 208 3 15 chrX 7455178 7455486 -169518654 - MLT1A2 LTR MaLR 0 374 1 3525 141 17 7 chrX 7455855 7456431 -169517709 - L1MB7 LINE L1 -23 6161 5580 522 247 110 26 chrX 7456499 7456653 -169517487 - MER5B DNA MER1_type -8 170 4 581 306 52 6 chrX 7456946 7457119 -169517021 - MIR SINE MIR -80 182 2 211 241 24 72 chrX 7457907 7457990 -169516150 - L2 LINE L2 -84 3229 3151 481 220 220 17 chrX 7458235 7458408 -169515732 - MIR SINE MIR -25 237 30 257 73 0 24 chrX 7458472 7458513 -169515627 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 196 264 194 0 chrX 7458514 7458586 -169515554 - L2 LINE L2 -14 3299 3214 182 297 47 16 chrX 7458645 7458709 -169515431 - L2 LINE L2 -66 3206 3141 1856 153 7 0 chrX 7459018 7459293 -169514847 + AluJo SINE Alu 20 296 -16 265 318 77 12 chrX 7460358 7460528 -169513612 + L2 LINE L2 1668 1848 -1466 791 281 116 44 chrX 7461171 7461469 -169512671 + L2 LINE L2 1671 2007 -1307 1921 152 7 13 chrX 7461469 7461804 -169512336 + AluSx SINE Alu 1 312 0 791 281 116 44 chrX 7461804 7461911 -169512229 + L2 LINE L2 2007 2105 -1209 1535 169 4 4 chrX 7461928 7462189 -169511951 - L1MB5 LINE L1 0 6174 5914 334 273 13 0 chrX 7462229 7462306 -169511834 + L2 LINE L2 2574 2651 -663 252 0 0 0 chrX 7462332 7462360 -169511780 + (CA)n Simple_repeat Simple_repeat 2 29 0 898 192 82 0 chrX 7462390 7462619 -169511521 - L1MB7 LINE L1 -191 5963 5715 1439 219 131 59 chrX 7462620 7463132 -169511008 + L2 LINE L2 2103 2651 -663 1242 187 9 5 chrX 7463787 7464001 -169510139 + MER20 DNA MER1_type 1 215 -4 404 239 36 43 chrX 7464695 7464833 -169509307 - MIR3 SINE MIR -31 177 41 198 0 0 0 chrX 7466198 7466220 -169507920 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chrX 7466739 7466774 -169507366 + AT_rich Low_complexity Low_complexity 1 35 0 288 200 12 50 chrX 7467194 7467274 -169506866 + L2 LINE L2 3231 3307 -6 186 373 124 17 chrX 7467372 7467549 -169506591 - L3b LINE CR1 -12 1571 1376 1116 126 0 18 chrX 7468424 7468632 -169505508 - AluSq SINE Alu 0 326 122 2421 92 0 3 chrX 7468650 7468955 -169505185 - AluSq SINE Alu -9 304 1 1444 182 68 14 chrX 7468958 7469238 -169504902 - AluJb SINE Alu -17 295 1 9311 110 17 1 chrX 7469330 7471267 -169502873 + L1PA16 LINE L1 4046 6004 -162 315 259 47 12 chrX 7472200 7472285 -169501855 - MER5A DNA MER1_type -101 88 1 1962 131 10 16 chrX 7472700 7473012 -169501128 - AluJo SINE Alu -2 310 1 480 245 113 0 chrX 7473674 7473833 -169500307 + MER5B DNA MER1_type 1 177 -1 1372 144 22 10 chrX 7474560 7474927 -169499213 - MSTB2 LTR MaLR 0 457 13 2115 201 38 42 chrX 7475334 7475832 -169498308 + MLT1D LTR MaLR 1 496 -9 2671 46 0 0 chrX 7479463 7479768 -169494372 - AluY SINE Alu -6 305 1 207 0 0 0 chrX 7479853 7479876 -169494264 + (TG)n Simple_repeat Simple_repeat 2 24 0 1580 173 4 7 chrX 7479908 7480180 -169493960 - AluJb SINE Alu -30 282 12 250 274 66 47 chrX 7480982 7481088 -169493052 + MIR SINE MIR 17 124 -138 633 257 102 0 chrX 7481098 7481285 -169492855 + MIR SINE MIR 13 218 -44 2387 88 0 19 chrX 7481285 7481602 -169492538 + AluSx SINE Alu 1 311 -1 975 200 15 25 chrX 7481786 7481986 -169492154 - MER58A DNA MER1_type 0 224 27 195 196 22 22 chrX 7482055 7482101 -169492039 - MIR SINE MIR -6 256 211 321 297 0 0 chrX 7483004 7483078 -169491062 + MIR SINE MIR 24 97 -111 3310 98 20 7 chrX 7483106 7483629 -169490511 + L1MA1 LINE L1 5573 6096 -204 207 288 8 16 chrX 7483822 7483947 -169490193 + (TGGG)n Simple_repeat Simple_repeat 1 124 0 534 250 64 68 chrX 7484495 7484715 -169489425 + L2 LINE L2 3085 3303 -10 1147 238 5 0 chrX 7484801 7485024 -169489116 - MER58A DNA MER1_type 0 224 1 2046 130 0 33 chrX 7485789 7486090 -169488050 + AluJb SINE Alu 1 291 -21 1019 174 36 20 chrX 7487712 7487908 -169486232 - MER58A DNA MER1_type 0 224 26 697 0 22 11 chrX 7488355 7488444 -169485696 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 261 180 0 20 chrX 7488488 7488538 -169485602 - MER58 DNA MER1_type -16 2404 2356 * 764 225 172 45 chrX 7488520 7488681 -169485459 - MER58 DNA MER1_type -2145 275 71 2363 77 0 13 chrX 7488681 7488981 -169485159 + AluSp SINE Alu 1 296 -17 764 225 172 45 chrX 7488981 7489063 -169485077 - MER58 DNA MER1_type -2349 71 1 884 190 0 12 chrX 7489188 7489351 -169484789 - FRAM SINE Alu -4 172 12 28 0 0 0 chrX 7489390 7489418 -169484722 + AT_rich Low_complexity Low_complexity 1 28 0 885 120 0 8 chrX 7489419 7489544 -169484596 - FLAM_C SINE Alu -19 124 1 257 219 49 12 chrX 7489554 7489636 -169484504 + MER117 DNA MER1_type 37 121 -76 1244 224 39 77 chrX 7492440 7492922 -169481218 + LTR37B LTR ERV1 1 464 -4 2429 162 29 43 chrX 7494243 7494755 -169479385 + L1MB8 LINE L1 5674 6178 0 2140 112 0 20 chrX 7494764 7495060 -169479080 + AluJb SINE Alu 1 290 -22 554 213 0 39 chrX 7495230 7495357 -169478783 - L2 LINE L2 0 3313 3192 2258 145 75 6 chrX 7495434 7495885 -169478255 - MER31A LTR ERV1 0 661 1 1790 194 32 24 chrX 7496580 7496956 -169477184 + LTR2B LTR ERV1 112 490 0 2862 80 10 8 chrX 7496956 7497354 -169476786 + Harlequin LTR ERV1 1 399 -6497 744 134 0 52 chrX 7497325 7497459 -169476681 + HERVE LTR ERV1 255 381 -7432 * 300 135 0 39 chrX 7497447 7497499 -169476641 + HERVE LTR ERV1 255 304 -7509 * 6967 66 94 21 chrX 7497500 7498488 -169475652 + HERVE LTR ERV1 282 1341 -5555 1902 56 56 0 chrX 7498478 7498748 -169475392 + HERVE LTR ERV1 1984 2268 -4628 * 582 54 0 0 chrX 7500278 7500352 -169473788 + (GA)n Simple_repeat Simple_repeat 1 74 0 2282 106 0 0 chrX 7500740 7501042 -169473098 + AluSx SINE Alu 1 302 -10 189 0 0 0 chrX 7501826 7501847 -169472293 + (T)n Simple_repeat Simple_repeat 1 21 0 408 191 0 0 chrX 7502499 7502588 -169471552 + G-rich Low_complexity Low_complexity 1 89 0 439 286 0 41 chrX 7502609 7502756 -169471384 + G-rich Low_complexity Low_complexity 6 146 0 203 324 14 7 chrX 7502897 7503039 -169471101 + (TA)n Simple_repeat Simple_repeat 2 144 0 249 33 0 0 chrX 7504115 7504145 -169469995 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chrX 7504930 7504952 -169469188 + (A)n Simple_repeat Simple_repeat 1 22 0 26 64 0 0 chrX 7505255 7505302 -169468838 + AT_rich Low_complexity Low_complexity 1 47 0 401 291 132 35 chrX 7505815 7506155 -169467985 + L3 LINE CR1 1197 1569 -8 2030 140 6 19 chrX 7508042 7508356 -169465784 - AluJb SINE Alu -2 310 1 242 247 68 75 chrX 7508881 7509034 -169465106 + MIR3 SINE MIR 35 184 -24 1891 122 40 4 chrX 7509090 7509368 -169464772 + AluJo SINE Alu 1 288 -24 2129 133 7 0 chrX 7509373 7509666 -169464474 + AluSx SINE Alu 1 295 -17 201 74 0 0 chrX 7510088 7510115 -169464025 + (TTATA)n Simple_repeat Simple_repeat 4 30 0 1142 175 0 0 chrX 7511238 7511421 -169462719 - AluJb SINE Alu -3 309 127 1952 142 42 0 chrX 7511433 7511722 -169462418 + AluSx SINE Alu 1 301 -11 242 374 20 0 chrX 7512279 7512378 -169461762 + L2 LINE L2 3169 3269 -3 210 191 0 0 chrX 7512947 7512989 -169461151 + (TA)n Simple_repeat Simple_repeat 2 43 0 253 198 109 50 chrX 7513793 7513894 -169460246 - MIR SINE MIR -23 239 133 793 11 0 0 chrX 7514173 7514268 -169459872 - L1MA4A LINE L1 -7 6296 6202 189 0 0 0 chrX 7515509 7515530 -169458610 + (TTG)n Simple_repeat Simple_repeat 1 21 0 236 270 0 0 chrX 7517177 7517240 -169456900 + L2 LINE L2 3246 3308 -5 204 229 0 21 chrX 7517243 7517291 -169456849 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 1551 95 40 5 chrX 7517299 7517521 -169456619 - MER30 DNA MER1_type 0 230 1 1886 178 12 3 chrX 7517928 7518260 -169455880 + MER2 DNA MER2_type 2 336 -9 2445 62 0 0 chrX 7519189 7519477 -169454663 + AluY SINE Alu 1 288 -23 1448 216 78 56 chrX 7519482 7519849 -169454291 - MLT1C LTR MaLR 0 467 87 1940 138 20 10 chrX 7519849 7520145 -169453995 + AluJb SINE Alu 1 299 -13 1448 216 78 56 chrX 7520145 7520225 -169453915 - MLT1C LTR MaLR -380 87 10 1364 176 52 94 chrX 7520678 7521059 -169453081 + MSTB LTR MaLR 19 383 -43 347 248 24 24 chrX 7522156 7522281 -169451859 + (TA)n Simple_repeat Simple_repeat 1 125 0 1333 159 136 31 chrX 7523396 7523654 -169450486 + AluJb SINE Alu 10 294 -18 210 338 0 12 chrX 7523731 7523811 -169450329 - L2 LINE L2 -213 3059 2981 492 62 0 0 chrX 7523860 7523924 -169450216 + (TC)n Simple_repeat Simple_repeat 2 65 0 315 0 0 0 chrX 7523943 7523978 -169450162 + (CA)n Simple_repeat Simple_repeat 2 36 0 2359 107 0 3 chrX 7524025 7524335 -169449805 + AluSx SINE Alu 1 309 -3 446 314 29 29 chrX 7525902 7526074 -169448066 - MIR3 SINE MIR -21 187 16 7457 53 10 0 chrX 7527067 7527970 -169446170 - Harlequin LTR ERV1 -2633 4263 3352 28 0 0 0 chrX 7528287 7528315 -169445825 + AT_rich Low_complexity Low_complexity 1 28 0 669 136 39 0 chrX 7528315 7528418 -169445722 - U6 snRNA snRNA 0 107 1 1695 247 106 11 chrX 7528799 7529273 -169444867 + LTR40a LTR ERVL 1 519 0 23 54 0 0 chrX 7531507 7531544 -169442596 + AT_rich Low_complexity Low_complexity 1 37 0 2562 66 0 0 chrX 7531811 7532116 -169442024 - AluY SINE Alu -6 305 1 928 233 26 37 chrX 7532118 7532466 -169441674 - L1M4 LINE L1 -1449 4697 4354 39 38 0 0 chrX 7532820 7532873 -169441267 + AT_rich Low_complexity Low_complexity 1 53 0 1027 197 0 0 chrX 7532873 7533051 -169441089 - AluJ SINE Alu -10 302 125 405 118 47 24 chrX 7533051 7533178 -169440962 + (TA)n Simple_repeat Simple_repeat 2 131 0 960 107 0 0 chrX 7533179 7533301 -169440839 - AluJ SINE Alu -190 122 1 1040 178 53 14 chrX 7533578 7533786 -169440354 - MLT1A1 LTR MaLR -149 216 1 991 251 66 11 chrX 7533862 7534149 -169439991 + LTR16A1 LTR ERVL 155 457 0 2449 80 0 3 chrX 7534237 7534549 -169439591 + AluY SINE Alu 1 311 0 447 136 0 12 chrX 7535542 7535623 -169438517 - L1MA5 LINE L1 0 6300 6221 28 71 0 0 chrX 7535655 7535711 -169438429 + AT_rich Low_complexity Low_complexity 1 56 0 361 294 33 50 chrX 7535972 7536152 -169437988 + MIR SINE MIR 78 254 -8 4841 122 11 7 chrX 7538329 7539068 -169435072 + L1PA16 LINE L1 5424 6165 -1 201 274 16 16 chrX 7539238 7539300 -169434840 - MIR SINE MIR -115 147 86 1541 95 5 5 chrX 7539643 7539843 -169434297 - AluSc SINE Alu -109 200 1 779 192 110 11 chrX 7540013 7540195 -169433945 + L1ME2 LINE L1 5963 6162 -2 278 0 54 0 chrX 7541091 7541128 -169433012 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 183 345 58 6 chrX 7541141 7541312 -169432828 - MIR SINE MIR -36 226 47 2456 139 71 73 chrX 7543272 7543762 -169430378 - LTR2B LTR ERV1 -1 489 1 599 238 41 12 chrX 7543902 7544074 -169430066 - MER33 DNA MER1_type -138 186 10 1004 237 19 14 chrX 7544081 7544296 -169429844 - MER58A DNA MER1_type 0 224 9 442 175 183 5 chrX 7544565 7544687 -169429453 + MIR SINE MIR 4 144 -64 22 56 0 0 chrX 7545808 7545844 -169428296 + AT_rich Low_complexity Low_complexity 1 36 0 1867 125 125 3 chrX 7546888 7547208 -169426932 + MER46B DNA MER2_type 3 236 0 1493 189 0 34 chrX 7547235 7547532 -169426608 + AluJo SINE Alu 1 287 -25 1983 133 0 10 chrX 7547660 7547962 -169426178 - AluSx SINE Alu -13 299 1 291 188 16 16 chrX 7548388 7548452 -169425688 - MER20 DNA MER1_type -155 64 1 1629 135 58 8 chrX 7548707 7548998 -169425142 + AluJo SINE Alu 12 315 0 29 70 0 0 chrX 7549327 7549384 -169424756 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chrX 7549519 7549555 -169424585 + AT_rich Low_complexity Low_complexity 1 36 0 464 310 61 31 chrX 7550933 7551162 -169422978 - MIR SINE MIR -1 261 26 311 333 75 11 chrX 7551821 7551995 -169422145 + MIR SINE MIR 13 197 -65 1570 249 40 18 chrX 7552032 7552481 -169421659 + L1ME1 LINE L1 5703 6161 -5 218 31 0 31 chrX 7553159 7553191 -169420949 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 393 262 60 30 chrX 7554055 7554254 -169419886 - L1ME2 LINE L1 0 6166 5968 182 328 107 16 chrX 7555390 7555512 -169418628 - MIR3 SINE MIR -63 145 13 283 222 0 0 chrX 7555779 7555833 -169418307 - MER94 DNA DNA -79 55 2 698 0 12 0 chrX 7556079 7556161 -169417979 + (CA)n Simple_repeat Simple_repeat 2 84 0 478 250 22 15 chrX 7557408 7557544 -169416596 + MIR SINE MIR 16 152 -110 180 0 0 0 chrX 7558084 7558104 -169416036 + (A)n Simple_repeat Simple_repeat 1 20 0 1476 160 98 49 chrX 7560112 7560437 -169413703 + MER58B DNA MER1_type 1 341 0 214 351 18 12 chrX 7560596 7560767 -169413373 + CT-rich Low_complexity Low_complexity 1 172 0 207 194 0 0 chrX 7561094 7561130 -169413010 + (CATA)n Simple_repeat Simple_repeat 4 39 0 25 0 0 0 chrX 7561130 7561155 -169412985 + AT_rich Low_complexity Low_complexity 1 25 0 1887 97 41 4 chrX 7561634 7561903 -169412237 - L1PA8 LINE L1 0 6172 5894 409 295 5 58 chrX 7561952 7562142 -169411998 + CT-rich Low_complexity Low_complexity 1 180 0 2456 161 12 5 chrX 7562748 7563152 -169410988 - L1MA6 LINE L1 0 6300 5894 1531 140 8 51 chrX 7563164 7563503 -169410637 - L1MA5 LINE L1 -321 5970 5655 547 273 107 19 chrX 7563519 7563724 -169410416 + MIR SINE MIR 36 258 -4 443 209 189 53 chrX 7565720 7566021 -169408119 - L1ME4a LINE L1 -46 6075 5734 432 272 20 27 chrX 7566417 7566564 -169407576 + MER5A DNA MER1_type 44 189 0 1038 239 36 30 chrX 7566936 7567270 -169406870 - L1 LINE L1 -2452 3694 3359 1091 162 66 5 chrX 7567540 7567738 -169406402 - L1MD3 LINE L1 -137 7858 7649 189 0 0 0 chrX 7568646 7568667 -169405473 + (TTA)n Simple_repeat Simple_repeat 2 22 0 214 208 62 0 chrX 7570802 7570850 -169403290 - L2 LINE L2 -96 3217 3167 482 154 7 26 chrX 7571298 7571370 -169402770 - MSTB2 LTR MaLR 0 457 385 1777 165 17 7 chrX 7571370 7571661 -169402479 + AluJb SINE Alu 2 295 -17 482 154 7 26 chrX 7571661 7571704 -169402436 - MSTB2 LTR MaLR -72 385 287 183 80 0 0 chrX 7572659 7572684 -169401456 + (TA)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chrX 7573004 7573033 -169401107 + (T)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chrX 7573137 7573161 -169400979 + (CA)n Simple_repeat Simple_repeat 2 25 0 7225 80 21 14 chrX 7573723 7574733 -169399407 + Harlequin LTR ERV1 4478 5494 -1402 198 300 218 0 chrX 7574928 7575098 -169399042 - L3 LINE CR1 -126 1451 1245 594 284 53 5 chrX 7575175 7575365 -169398775 - MIR SINE MIR -17 245 47 1815 220 27 34 chrX 7575858 7576392 -169397748 + L1MB8 LINE L1 5466 5990 -194 201 354 0 13 chrX 7576510 7576589 -169397551 + L2 LINE L2 3191 3268 -4 534 264 42 0 chrX 7576938 7577105 -169397035 + MER104 DNA Tc2 7 180 0 421 304 15 0 chrX 7577961 7578096 -169396044 + L1 LINE L1 3745 3881 -2265 1603 283 29 7 chrX 7578126 7578688 -169395452 - L1M4 LINE L1 -1098 5048 4475 1419 216 47 13 chrX 7578687 7579071 -169395069 + L1 LINE L1 3564 3960 -2186 * 3569 142 48 15 chrX 7581071 7581721 -169392419 - L1MB2 LINE L1 -2 6169 5499 3009 166 49 19 chrX 7583797 7584368 -169389772 + L1MD2 LINE L1 5428 6015 -344 237 242 8 17 chrX 7584513 7584633 -169389507 + G-rich Low_complexity Low_complexity 4 122 0 300 188 0 0 chrX 7584772 7584841 -169389299 + G-rich Low_complexity Low_complexity 1 69 0 299 168 37 22 chrX 7585502 7585584 -169388556 + MER53 DNA DNA 1 116 -73 332 262 85 38 chrX 7586188 7586344 -169387796 + MIR SINE MIR 21 192 -69 670 269 144 30 chrX 7586499 7586860 -169387280 + LTR16C LTR ERVL 80 481 -10 594 96 0 21 chrX 7587058 7587152 -169386988 - MER49 LTR ERV1 -831 92 1 237 330 103 49 chrX 7589987 7590172 -169383968 + L2 LINE L2 2985 3179 -93 222 208 0 0 chrX 7590537 7590585 -169383555 + CT-rich Low_complexity Low_complexity 3 50 0 443 228 16 65 chrX 7591979 7592163 -169381977 + CT-rich Low_complexity Low_complexity 2 176 0 6004 186 33 6 chrX 7592298 7593464 -169380676 + L1P LINE L1 1403 2600 -3546 1342 196 48 102 chrX 7593617 7594055 -169380085 - MLT1E1 LTR MaLR -165 489 17 365 45 0 0 chrX 7594124 7594168 -169379972 + (TG)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chrX 7594174 7594200 -169379940 + (TA)n Simple_repeat Simple_repeat 1 26 0 222 186 31 41 chrX 7594230 7594327 -169379813 + (TTAAA)n Simple_repeat Simple_repeat 3 98 0 * 329 215 23 35 chrX 7594293 7594465 -169379675 + (TTTA)n Simple_repeat Simple_repeat 3 172 0 252 260 35 0 chrX 7594382 7594555 -169379585 + (TTA)n Simple_repeat Simple_repeat 1 179 0 * 22 0 0 0 chrX 7594555 7594577 -169379563 + AT_rich Low_complexity Low_complexity 1 22 0 185 141 64 0 chrX 7594577 7594655 -169379485 + (TA)n Simple_repeat Simple_repeat 1 83 0 70 13 0 0 chrX 7594660 7594737 -169379403 + AT_rich Low_complexity Low_complexity 1 77 0 1256 199 0 30 chrX 7595292 7595558 -169378582 - AluJo SINE Alu -17 295 38 198 341 81 24 chrX 7596470 7596593 -169377547 - L2 LINE L2 -617 2697 2568 281 361 133 0 chrX 7596612 7596770 -169377370 + MIR3 SINE MIR 7 185 -23 508 256 125 47 chrX 7597579 7597847 -169376293 - MLT1K LTR MaLR -8 589 323 33 0 0 0 chrX 7598719 7598752 -169375388 + AT_rich Low_complexity Low_complexity 1 33 0 217 330 33 0 chrX 7598835 7598926 -169375214 - MER5B DNA MER1_type -1 177 84 896 268 98 0 chrX 7599027 7599303 -169374837 + MLT1I LTR MaLR 101 403 -6 193 238 0 48 chrX 7599309 7599351 -169374789 - MER5B DNA MER1_type -135 43 4 8048 29 1 4 chrX 7599534 7600947 -169373193 + L1PA4 LINE L1 4744 6153 -2 983 224 35 39 chrX 7601920 7602206 -169371934 + L1MA9 LINE L1 5990 6274 -38 3604 106 10 4 chrX 7603045 7603556 -169370584 - L1MA4 LINE L1 -10 6290 5777 2282 107 3 0 chrX 7603575 7603874 -169370266 - AluSx SINE Alu -11 301 2 197 370 55 24 chrX 7606128 7606255 -169367885 + L2 LINE L2 3127 3257 -15 202 274 0 41 chrX 7607189 7607262 -169366878 + GA-rich Low_complexity Low_complexity 4 73 0 1206 156 18 58 chrX 7607819 7608044 -169366096 + MER20 DNA MER1_type 1 216 -3 251 311 76 17 chrX 7608722 7608841 -169365299 + L2 LINE L2 3143 3268 -4 859 221 156 58 chrX 7608893 7609342 -169364798 + MLT1E LTR MaLR 1 493 -100 378 289 94 13 chrX 7609809 7609968 -169364172 - MIR3 SINE MIR -6 202 31 1917 169 14 0 chrX 7611426 7611722 -169362418 - AluJo SINE Alu -12 300 1 878 140 11 182 chrX 7611898 7612162 -169361978 - MER20 DNA MER1_type 0 219 1 1081 194 58 82 chrX 7612314 7612741 -169361399 + LTR37B LTR ERV1 45 461 -7 850 288 21 13 chrX 7612773 7613148 -169360992 - L1ME3A LINE L1 -288 5882 5505 425 283 88 19 chrX 7613193 7613416 -169360724 - L1ME3A LINE L1 -733 5429 5195 3941 265 84 32 chrX 7613487 7615605 -169358535 - L1MEc LINE L1 -3943 2272 77 232 262 0 56 chrX 7615716 7615823 -169358317 - L1ME3A LINE L1 -960 5186 5086 603 288 109 8 chrX 7616258 7616733 -169357407 - L1ME3A LINE L1 -1088 5058 4536 2194 199 128 0 chrX 7616736 7617234 -169356906 + MLT1F1 LTR MaLR 2 563 -4 551 275 185 16 chrX 7617234 7617855 -169356285 - L1ME3A LINE L1 -1609 4537 3812 2435 123 17 38 chrX 7618067 7618489 -169355651 + L1MC1 LINE L1 5916 6328 -5 182 326 0 0 chrX 7619029 7619075 -169355065 - L2 LINE L2 -18 3254 3209 947 55 16 0 chrX 7619394 7619521 -169354619 + L1PA4 LINE L1 6027 6155 0 794 167 0 0 chrX 7619531 7619651 -169354489 + FLAM_A SINE Alu 1 120 -13 29 28 0 0 chrX 7619651 7619687 -169354453 + AT_rich Low_complexity Low_complexity 1 36 0 314 277 113 19 chrX 7620593 7620752 -169353388 - MLT1K LTR MaLR -13 575 402 1960 118 83 3 chrX 7620770 7621109 -169353031 - LTR42 LTR ERVL 0 495 130 889 26 70 0 chrX 7621214 7621328 -169352812 - L1PA5 LINE L1 0 6154 6033 714 21 0 199 chrX 7621328 7621469 -169352671 + L1PA5 LINE L1 5851 5963 -191 903 113 75 0 chrX 7621469 7621628 -169352512 - LTR42 LTR ERVL -324 171 1 2306 133 24 87 chrX 7621631 7622126 -169352014 - MER31B LTR ERV1 0 466 3 241 326 34 0 chrX 7622216 7622305 -169351835 - MLT1K LTR MaLR -338 250 159 266 245 233 31 chrX 7623229 7623388 -169350752 + MIR3 SINE MIR 18 208 0 324 305 144 11 chrX 7623531 7623718 -169350422 - MIR SINE MIR -50 212 1 215 56 56 0 chrX 7624670 7624706 -169349434 + A-rich Low_complexity Low_complexity 2 39 0 1827 169 4 0 chrX 7624794 7625073 -169349067 - AluJb SINE Alu -32 280 1 336 274 39 10 chrX 7625271 7625373 -169348767 + MIR SINE MIR 88 192 -70 2094 129 0 10 chrX 7625374 7625677 -169348463 + AluSx SINE Alu 4 303 -9 1898 154 54 153 chrX 7626189 7626746 -169347394 + MLT1D LTR MaLR 4 505 0 770 148 12 24 chrX 7627174 7627343 -169346797 + GA-rich Low_complexity Low_complexity 3 169 0 189 195 0 0 chrX 7627913 7627954 -169346186 + CT-rich Low_complexity Low_complexity 3 43 0 680 301 27 34 chrX 7628373 7628635 -169345505 + MIR SINE MIR 3 262 0 25 0 0 0 chrX 7629517 7629542 -169344598 + AT_rich Low_complexity Low_complexity 1 25 0 641 208 14 0 chrX 7630839 7630983 -169343157 - Tigger6a DNA MER2_type 0 1083 938 3917 139 15 71 chrX 7630983 7631467 -169342673 + L1PB4 LINE L1 4824 5334 -822 2161 104 3 3 chrX 7631467 7631764 -169342376 + AluSg SINE Alu 1 297 -13 3917 139 15 71 chrX 7631764 7632240 -169341900 + L1PB4 LINE L1 5334 5700 -456 12410 30 1 3 chrX 7632240 7634505 -169339635 + L1PA4 LINE L1 3875 6155 0 3917 139 15 71 chrX 7634505 7634823 -169339317 + L1PB4 LINE L1 5700 6034 -122 5724 110 16 2 chrX 7634831 7636371 -169337769 - L1PA14 LINE L1 -9 6152 4586 2335 78 0 0 chrX 7636371 7636692 -169337448 + AluY SINE Alu 1 321 0 5724 110 16 2 chrX 7636692 7636968 -169337172 - L1PA14 LINE L1 -1575 4586 4315 692 168 32 0 chrX 7636968 7637091 -169337049 + L1PB4 LINE L1 6022 6150 -6 2919 193 96 10 chrX 7637098 7637777 -169336363 - Tigger6a DNA MER2_type -130 953 217 33 66 0 0 chrX 7638039 7638100 -169336040 + AT_rich Low_complexity Low_complexity 1 61 0 3331 119 47 4 chrX 7638244 7638782 -169335358 + MER34B LTR ERV1 3 563 -2 260 286 60 91 chrX 7638931 7639130 -169335010 + L2 LINE L2 3030 3222 -50 391 309 15 15 chrX 7639147 7639283 -169334857 - MIR SINE MIR -4 258 123 2308 113 0 3 chrX 7639508 7639809 -169334331 + AluSx SINE Alu 1 300 -12 267 312 26 0 chrX 7640113 7640190 -169333950 - LTR67 LTR ERVL -363 194 116 212 0 36 0 chrX 7640406 7640434 -169333706 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 643 279 73 21 chrX 7641414 7641647 -169332493 - MIR SINE MIR -10 252 8 273 247 0 49 chrX 7642583 7642664 -169331476 - MLT1K LTR MaLR -329 259 183 253 200 215 0 chrX 7642705 7642770 -169331370 - L2 LINE L2 0 3313 3235 2030 123 112 29 chrX 7642967 7643350 -169330790 - MSTA LTR MaLR -7 421 7 335 294 67 73 chrX 7644076 7644341 -169329799 - HsTC2 DNA Tc2 -249 1649 1209 1028 118 10 98 chrX 7644341 7644468 -169329672 - MER5A DNA MER1_type -3 186 82 2143 118 14 0 chrX 7644468 7644764 -169329376 + AluSx SINE Alu 1 300 -12 1028 118 10 98 chrX 7644764 7644839 -169329301 - MER5A DNA MER1_type -107 82 2 335 294 67 73 chrX 7644839 7644917 -169329223 - HsTC2 DNA Tc2 -689 1209 1132 245 315 0 0 chrX 7645183 7645272 -169328868 - HsTC2 DNA Tc2 -1031 867 779 1375 137 12 4 chrX 7645278 7645519 -169328621 - L1MB3 LINE L1 -2 6181 5939 278 303 285 18 chrX 7646634 7646799 -169327341 - MIR SINE MIR -3 259 51 193 245 20 0 chrX 7646813 7646862 -169327278 - L2 LINE L2 0 3313 3264 291 364 9 9 chrX 7646995 7647105 -169327035 - MIR SINE MIR -148 114 5 2093 143 10 56 chrX 7647114 7647506 -169326634 + MLT1A2 LTR MaLR 1 374 0 2254 156 54 12 chrX 7647525 7647990 -169326150 + L1MB7 LINE L1 5682 6164 -20 344 267 17 25 chrX 7648004 7648124 -169326016 + MIR SINE MIR 135 253 -9 523 212 126 81 chrX 7650782 7650980 -169323160 - MIR SINE MIR -3 259 53 201 121 0 0 chrX 7651273 7651306 -169322834 + (TC)n Simple_repeat Simple_repeat 2 34 0 901 221 74 125 chrX 7651497 7652049 -169322091 + MLT1H1 LTR MaLR 32 555 0 311 262 107 8 chrX 7652607 7652729 -169321411 - L2 LINE L2 -14 3299 3166 31 0 0 0 chrX 7652931 7652962 -169321178 + AT_rich Low_complexity Low_complexity 1 31 0 285 54 0 0 chrX 7653056 7653093 -169321047 + tRNA-Val-GTG tRNA tRNA 1 37 -39 486 329 47 22 chrX 7653427 7653746 -169320394 + LTR16C LTR ERVL 149 475 -16 1292 183 179 63 chrX 7654020 7654335 -169319805 + L1MD2 LINE L1 5814 6204 -155 432 0 0 0 chrX 7654335 7654383 -169319757 + (CA)n Simple_repeat Simple_repeat 2 49 0 1292 183 179 63 chrX 7654383 7654543 -169319597 + L1MD2 LINE L1 6204 6344 -15 281 206 165 10 chrX 7655490 7655587 -169318553 - L2 LINE L2 0 3313 3202 439 211 99 37 chrX 7656054 7656212 -169317928 - LTR33A LTR ERVL -339 184 17 2237 121 44 22 chrX 7656212 7656624 -169317516 + MSTB LTR MaLR 1 421 -5 294 253 95 0 chrX 7656642 7656737 -169317403 - LTR33A LTR ERVL -151 372 269 397 306 120 24 chrX 7657456 7657665 -169316475 + MIR SINE MIR 28 256 -6 317 280 44 26 chrX 7657809 7657936 -169316204 + MER5A DNA MER1_type 10 148 -40 378 192 13 46 chrX 7659140 7659291 -169314849 + GA-rich Low_complexity Low_complexity 3 148 0 1211 213 47 52 chrX 7659295 7659600 -169314540 + MLT2B2 LTR ERVL 175 480 -35 345 47 0 0 chrX 7659600 7659643 -169314497 + (CA)n Simple_repeat Simple_repeat 1 43 0 306 0 0 0 chrX 7659642 7659676 -169314464 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 1211 213 47 52 chrX 7659643 7659713 -169314427 + MLT2B2 LTR ERVL 480 515 0 1954 154 113 10 chrX 7659714 7660104 -169314036 + MLT1D LTR MaLR 76 505 0 1560 146 15 116 chrX 7660619 7660947 -169313193 - AluJb SINE Alu -17 295 1 1931 250 68 46 chrX 7661109 7661756 -169312384 - MER21B LTR ERV1 -105 758 98 2224 64 3 3 chrX 7662651 7662934 -169311206 - L1PB1 LINE L1 -7 6144 5862 349 262 64 40 chrX 7663435 7663637 -169310503 + ERVL LTR ERVL 2243 2449 -3315 544 235 87 37 chrX 7663849 7664036 -169310104 - L1M2 LINE L1 -4221 1995 1608 306 206 137 14 chrX 7664182 7664328 -169309812 - MER113 DNA MER1_type? -354 167 4 1852 177 0 16 chrX 7664345 7664662 -169309478 + AluJb SINE Alu 1 312 0 349 302 94 6 chrX 7664754 7664913 -169309227 - MIR3 SINE MIR -7 201 29 935 139 0 26 chrX 7665036 7665187 -169308953 - MER6B DNA MER2_type -63 147 1 293 265 77 61 chrX 7667269 7667450 -169306690 - HAL1 LINE L1 -5 2502 2319 2542 222 42 29 chrX 7668109 7668727 -169305413 - MLT1E2 LTR MaLR 0 626 1 201 289 31 72 chrX 7668767 7668864 -169305276 - L2 LINE L2 -603 2711 2619 1574 205 15 82 chrX 7669858 7670249 -169303891 - MLT1A1 LTR MaLR 0 365 1 2274 93 0 17 chrX 7670398 7670700 -169303440 - AluSx SINE Alu -15 297 1 2010 176 113 0 chrX 7671132 7671512 -169302628 + MSTB LTR MaLR 1 423 -3 205 316 18 0 chrX 7671983 7672040 -169302100 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 1557 133 0 0 chrX 7672993 7673211 -169300929 + AluSg/x SINE Alu 83 300 -12 1088 250 106 66 chrX 7673413 7673631 -169300509 - MLT1H1 LTR MaLR 0 555 347 2313 110 0 3 chrX 7673631 7673931 -169300209 + AluSx SINE Alu 11 309 -3 1088 250 106 66 chrX 7673931 7674255 -169299885 - MLT1H1 LTR MaLR -208 347 17 1058 249 198 8 chrX 7674564 7674942 -169299198 - MLT1J2 LTR MaLR 0 450 1 324 0 0 0 chrX 7675294 7675330 -169298810 + (TG)n Simple_repeat Simple_repeat 1 36 0 582 285 75 69 chrX 7675815 7676148 -169297992 - MLT1I LTR MaLR -4 405 71 474 65 0 0 chrX 7676273 7676335 -169297805 + (TG)n Simple_repeat Simple_repeat 2 63 0 3021 116 11 0 chrX 7677774 7678215 -169295925 - L1P LINE L1 -1771 4375 3930 1797 84 0 0 chrX 7678215 7678449 -169295691 + L1PA10 LINE L1 5919 6156 -12 425 303 161 19 chrX 7679761 7680022 -169294118 - LTR16A LTR ERVL -8 442 145 409 260 133 46 chrX 7680224 7680420 -169293720 + MLT1K LTR MaLR 216 428 -160 319 311 67 20 chrX 7680692 7680971 -169293169 + LTR16C LTR ERVL 175 491 0 299 288 25 0 chrX 7680971 7681046 -169293094 + MLT1K LTR MaLR 440 516 -72 243 174 0 0 chrX 7681373 7681427 -169292713 - L1M4 LINE L1 -3871 2511 2458 353 231 0 0 chrX 7683028 7683093 -169291047 + MER58 DNA MER1_type 1 65 -321 599 207 9 0 chrX 7683560 7683671 -169290469 + MER58 DNA MER1_type 2309 2420 0 289 183 24 49 chrX 7684118 7684200 -169289940 - MER20 DNA MER1_type -52 167 88 * 1877 206 17 49 chrX 7684186 7684658 -169289482 + MLT1C LTR MaLR 11 467 0 749 136 27 0 chrX 7684658 7684768 -169289372 - MER20 DNA MER1_type -106 113 1 509 310 41 29 chrX 7685298 7685543 -169288597 + MIR SINE MIR 15 262 0 2187 175 66 84 chrX 7686042 7686172 -169287968 - MLT1D LTR MaLR 0 505 374 18653 27 8 0 chrX 7686172 7689106 -169285034 + L1PA4 LINE L1 3206 6152 -3 2187 175 66 84 chrX 7689106 7689489 -169284651 - MLT1D LTR MaLR -131 374 1 833 218 122 48 chrX 7689863 7690134 -169284006 + LTR16C LTR ERVL 201 491 0 665 227 101 45 chrX 7690596 7690794 -169283346 + MER63A DNA MER1_type 1 209 -1 1360 209 118 34 chrX 7690832 7691239 -169282901 - MLT1J1 LTR MaLR -5 441 1 520 267 8 8 chrX 7691304 7691435 -169282705 - MIR SINE MIR -112 150 20 2220 159 109 17 chrX 7691848 7692314 -169281826 - MER34 LTR ERV1 -33 509 1 812 246 11 0 chrX 7694503 7694690 -169279450 - MER5A DNA MER1_type 0 189 1 467 240 55 9 chrX 7694826 7694986 -169279154 + MER5B DNA MER1_type 1 179 -10 1015 173 8 130 chrX 7695374 7695628 -169278512 - MER58A DNA MER1_type 0 224 2 723 146 184 13 chrX 7696158 7696316 -169277824 + MER20 DNA MER1_type 29 213 -6 232 316 10 41 chrX 7696602 7696700 -169277440 - MER5A DNA MER1_type -85 104 10 1926 141 13 20 chrX 7696954 7697253 -169276887 - AluJo SINE Alu -15 297 1 352 306 25 50 chrX 7698731 7698930 -169275210 - MIR SINE MIR -21 241 48 2311 121 0 3 chrX 7699001 7699314 -169274826 + AluSx SINE Alu 1 312 0 587 238 331 58 chrX 7699373 7699594 -169274546 + L2 LINE L2 2199 2359 -954 2135 139 21 3 chrX 7699594 7699932 -169274208 - MER2 DNA MER2_type 0 344 1 587 238 331 58 chrX 7699932 7700000 -169274140 + L2 LINE L2 2359 2407 -906 2362 88 0 7 chrX 7700000 7700296 -169273844 - AluSx SINE Alu -17 295 2 587 238 331 58 chrX 7700296 7700640 -169273500 + L2 LINE L2 2407 3005 -308 330 256 169 79 chrX 7703481 7703836 -169270304 + MLT1J LTR MaLR 125 511 0 592 257 94 18 chrX 7705401 7705749 -169268391 + MLT1J2 LTR MaLR 24 427 -23 270 360 54 9 chrX 7706050 7706161 -169267979 + MER91C DNA MER1_type 25 140 0 815 279 131 48 chrX 7706845 7707256 -169266884 + L1MC4 LINE L1 7082 7572 -470 319 137 0 0 chrX 7707256 7707307 -169266833 + L1PA16 LINE L1 6107 6157 -9 815 279 131 48 chrX 7707307 7707417 -169266723 + L1MC4 LINE L1 7572 7671 -371 3565 129 24 18 chrX 7707530 7708127 -169266013 + L1MC2 LINE L1 5707 6306 -38 1086 176 0 5 chrX 7708607 7708817 -169265323 + L1MB7 LINE L1 5183 5391 -755 917 125 0 7 chrX 7708811 7708936 -169265204 + L1MA2 LINE L1 6143 6268 -36 * 4339 28 0 0 chrX 7708936 7709433 -169264707 + L1PA5 LINE L1 5646 6145 -9 347 121 0 0 chrX 7709453 7709511 -169264629 + L1MA1 LINE L1 6245 6302 0 1176 154 18 32 chrX 7709756 7709976 -169264164 - MER20 DNA MER1_type 0 219 3 206 295 45 62 chrX 7710478 7710590 -169263550 + MIR SINE MIR 36 145 -63 1755 101 57 10 chrX 7710590 7710887 -169263253 + L1MA3 LINE L1 5995 6305 0 2113 167 53 7 chrX 7710903 7711316 -169262824 + L1MB7 LINE L1 5725 6156 -28 * 9368 123 8 14 chrX 7711301 7712773 -169261367 - L1P LINE L1 -2023 4123 2661 6678 77 14 8 chrX 7712773 7714230 -169259910 + L1PA10 LINE L1 4666 6150 -18 180 0 0 0 chrX 7714230 7714250 -169259890 + (TTAAA)n Simple_repeat Simple_repeat 1 20 0 468 35 0 0 chrX 7714485 7714543 -169259597 + (CA)n Simple_repeat Simple_repeat 2 59 0 833 178 10 56 chrX 7715666 7715863 -169258277 + MER5A DNA MER1_type 1 188 -1 1145 175 38 0 chrX 7716136 7716347 -169257793 - MER20 DNA MER1_type 0 219 1 1470 158 60 32 chrX 7717177 7717461 -169256679 - AluJo SINE Alu -20 292 1 295 299 13 0 chrX 7719775 7719852 -169254288 + L2 LINE L2 3188 3265 -7 254 295 71 18 chrX 7720269 7720381 -169253759 + L2 LINE L2 3196 3313 0 264 226 139 29 chrX 7720519 7720656 -169253484 + L1ME4a LINE L1 5968 6119 -2 2150 119 10 0 chrX 7720794 7721089 -169253051 + AluSx SINE Alu 1 298 -14 1100 191 10 24 chrX 7721292 7721501 -169252639 + MER20 DNA MER1_type 1 206 -13 1106 123 0 0 chrX 7721569 7721724 -169252416 + FRAM SINE Alu 1 152 -24 198 0 0 0 chrX 7721917 7721939 -169252201 + (TA)n Simple_repeat Simple_repeat 1 22 0 656 75 0 0 chrX 7722138 7722218 -169251922 - MADE1 DNA Mariner 0 80 1 226 318 19 28 chrX 7722229 7722336 -169251804 - L3b LINE CR1 -368 1215 1110 386 304 158 0 chrX 7724500 7724658 -169249482 + MER5A DNA MER1_type 7 189 0 2339 135 14 3 chrX 7725613 7725975 -169248165 + MER47A DNA MER2_type 1 366 0 366 217 24 12 chrX 7726004 7726087 -169248053 + MLT1I LTR MaLR 318 401 -8 2354 115 0 0 chrX 7727541 7727853 -169246287 - AluSx SINE Alu 0 312 1 27 0 0 0 chrX 7727853 7727880 -169246260 + AT_rich Low_complexity Low_complexity 1 27 0 2168 121 27 0 chrX 7727889 7728186 -169245954 + AluJb SINE Alu 1 305 -7 636 197 8 0 chrX 7728195 7728312 -169245828 + FLAM_C SINE Alu 1 118 -15 35 0 0 0 chrX 7728312 7728347 -169245793 + AT_rich Low_complexity Low_complexity 1 35 0 540 217 112 28 chrX 7728383 7728526 -169245614 + L1ME3A LINE L1 6007 6161 -9 2572 153 42 0 chrX 7728548 7728998 -169245142 + L1MB5 LINE L1 5706 6174 0 1494 179 4 12 chrX 7729179 7729436 -169244704 + AluJo SINE Alu 6 260 -52 379 142 85 0 chrX 7729444 7729550 -169244590 + GA-rich Low_complexity Low_complexity 3 117 0 314 271 115 8 chrX 7729727 7729849 -169244291 + L2 LINE L2 3128 3262 -10 443 270 75 35 chrX 7729950 7730150 -169243990 + MIR SINE MIR 49 256 -6 1552 204 8 66 chrX 7731117 7731479 -169242661 + MER58B DNA MER1_type 1 341 0 2303 115 0 3 chrX 7731616 7731929 -169242211 + AluSx SINE Alu 1 312 0 2102 129 0 35 chrX 7732918 7733229 -169240911 + AluJb SINE Alu 1 300 -12 3026 131 24 24 chrX 7733230 7733336 -169240804 + MER34 LTR ERV1 13 118 -424 2450 87 0 0 chrX 7733336 7733645 -169240495 - AluY SINE Alu -2 309 1 3026 131 24 24 chrX 7733645 7734042 -169240098 + MER34 LTR ERV1 117 516 -26 724 179 8 134 chrX 7734083 7734329 -169239811 + MER58C DNA MER1_type 1 215 0 732 209 35 0 chrX 7735015 7735187 -169238953 - MER5B DNA MER1_type 0 178 1 2033 128 3 17 chrX 7736168 7736346 -169237794 - AluJo SINE Alu 0 312 138 2239 120 3 0 chrX 7736346 7736645 -169237495 - AluSx SINE Alu -12 300 1 2033 128 3 17 chrX 7736645 7736762 -169237378 - AluJo SINE Alu -174 138 21 1071 172 0 0 chrX 7736847 7737010 -169237130 - FRAM SINE Alu -13 163 1 2040 157 7 0 chrX 7737848 7738153 -169235987 + AluJb SINE Alu 1 307 -5 1441 124 29 5 chrX 7738520 7738729 -169235411 + AluJo SINE Alu 7 220 -92 255 184 0 20 chrX 7738729 7738778 -169235362 + FLAM SINE Alu 86 133 0 1923 116 59 33 chrX 7738786 7739089 -169235051 + AluSx SINE Alu 1 311 -1 768 206 65 0 chrX 7740526 7740710 -169233430 + MIR SINE MIR 33 228 -34 575 183 80 51 chrX 7741378 7741553 -169232587 + MER5A DNA MER1_type 9 188 -1 3947 153 48 7 chrX 7742637 7743362 -169230778 + L1MB7 LINE L1 5429 6183 -1 499 264 88 23 chrX 7744255 7744471 -169229669 - MER46C DNA MER2_type -107 231 2 242 267 212 0 chrX 7744783 7744929 -169229211 + L2 LINE L2 1589 1765 -1549 1214 206 5 0 chrX 7745007 7745225 -169228915 + MER58A DNA MER1_type 4 222 -2 398 300 57 4 chrX 7745232 7745462 -169228678 + L2 LINE L2 1953 2194 -1120 258 245 132 9 chrX 7745573 7745679 -169228461 - MER117 DNA MER1_type -40 157 39 * 262 299 90 0 chrX 7745650 7745784 -169228356 - MER117 DNA MER1_type -47 150 5 329 307 132 19 chrX 7745929 7746481 -169227659 + L2 LINE L2 2485 3085 -187 252 0 0 0 chrX 7746564 7746592 -169227548 + (TG)n Simple_repeat Simple_repeat 2 29 0 244 297 36 36 chrX 7746690 7746801 -169227339 + L2 LINE L2 3203 3313 0 354 291 21 43 chrX 7746825 7746966 -169227174 - L2 LINE L2 0 3313 3176 1276 181 115 44 chrX 7746997 7747267 -169226873 + AluJo SINE Alu 1 289 -23 2174 165 3 0 chrX 7747268 7747626 -169226514 + L1MB8 LINE L1 5627 5985 -193 757 145 26 62 chrX 7748580 7748773 -169225367 - MER33 DNA MER1_type -8 355 170 613 181 10 1 chrX 7748756 7748865 -169225275 - MER33 DNA MER1_type -250 74 1 * 211 250 0 0 chrX 7748969 7749017 -169225123 + L2 LINE L2 3247 3294 -19 204 286 0 18 chrX 7749908 7749964 -169224176 + GA-rich Low_complexity Low_complexity 3 57 0 705 256 154 28 chrX 7750469 7750793 -169223347 + LTR16C LTR ERVL 112 476 -15 218 118 0 0 chrX 7751976 7752010 -169222130 - L2 LINE L2 -12 3301 3268 1160 178 41 18 chrX 7752128 7752347 -169221793 + MER58A DNA MER1_type 1 224 0 283 259 12 0 chrX 7752644 7752725 -169221415 - MIR SINE MIR -11 251 170 452 198 9 28 chrX 7752730 7752836 -169221304 - MER20 DNA MER1_type 0 219 116 334 305 19 32 chrX 7752839 7752993 -169221147 - MIR SINE MIR -98 164 13 210 260 52 26 chrX 7754548 7754625 -169219515 + MER91C DNA MER1_type 37 115 -25 1930 81 0 0 chrX 7755832 7756067 -169218073 - AluSc SINE Alu -74 235 1 4412 186 34 17 chrX 7757345 7758672 -169215468 + L1MB7 LINE L1 4831 6184 0 1747 147 0 52 chrX 7758682 7758988 -169215152 + AluJb SINE Alu 1 290 -22 513 213 0 39 chrX 7759158 7759285 -169214855 - L2 LINE L2 0 3313 3192 2260 143 75 6 chrX 7759362 7759813 -169214327 - MER31A LTR ERV1 0 661 1 426 318 42 5 chrX 7761081 7761270 -169212870 + MER117 DNA MER1_type 2 197 0 180 315 54 43 chrX 7761787 7761879 -169212261 + L2 LINE L2 3172 3264 -49 2028 146 6 19 chrX 7762294 7762610 -169211530 - AluJb SINE Alu 0 312 1 930 171 59 18 chrX 7763269 7763491 -169210649 - L1MA7 LINE L1 0 6291 6061 29 0 0 0 chrX 7763495 7763524 -169210616 + AT_rich Low_complexity Low_complexity 1 29 0 2144 188 71 29 chrX 7763573 7764052 -169210088 - MLT1D LTR MaLR -2 503 5 327 260 50 72 chrX 7764894 7765075 -169209065 + L1ME1 LINE L1 910 1086 -5298 803 147 0 0 chrX 7765547 7765663 -169208477 + FLAM_C SINE Alu 1 116 -27 635 244 28 28 chrX 7765830 7766006 -169208134 + MER58C DNA MER1_type 39 214 -1 570 286 127 71 chrX 7766131 7766621 -169207519 + L1ME1 LINE L1 3617 4133 -2249 3755 209 32 43 chrX 7766705 7767101 -169207039 + L1ME1 LINE L1 4537 4936 -1466 2483 64 0 0 chrX 7767101 7767399 -169206741 + AluY SINE Alu 1 298 -13 3755 209 32 43 chrX 7767399 7768069 -169206071 + L1ME1 LINE L1 4936 5612 -790 3223 69 30 7 chrX 7768069 7768503 -169205637 - MLT2A1 LTR ERVL 0 444 1 3755 209 32 43 chrX 7768503 7768812 -169205328 + L1ME1 LINE L1 5612 5923 -479 2009 139 3 7 chrX 7768812 7769113 -169205027 + AluJb SINE Alu 1 300 -12 3755 209 32 43 chrX 7769113 7769618 -169204522 + L1ME1 LINE L1 5923 6394 -8 309 306 36 0 chrX 7769618 7769729 -169204411 + L1ME1 LINE L1 5985 6099 -303 2040 130 0 33 chrX 7769938 7770237 -169203903 + AluJb SINE Alu 3 291 -21 961 188 34 19 chrX 7771860 7772067 -169202073 - MER58A DNA MER1_type 0 224 15 423 247 82 29 chrX 7772112 7772282 -169201858 + MER112 DNA MER1_type 17 195 -65 2386 85 0 19 chrX 7775350 7775667 -169198473 + AluSx SINE Alu 1 311 -1 893 210 15 25 chrX 7775851 7776051 -169198089 - MER58A DNA MER1_type 0 224 27 198 196 22 22 chrX 7776120 7776166 -169197974 - MIR SINE MIR -6 256 211 318 297 0 0 chrX 7777069 7777143 -169196997 + MIR SINE MIR 24 97 -111 4994 81 21 11 chrX 7777171 7777887 -169196253 + L1MA1 LINE L1 5573 6295 -7 26 0 0 0 chrX 7777900 7777926 -169196214 + AT_rich Low_complexity Low_complexity 1 26 0 207 100 0 0 chrX 7778600 7778630 -169195510 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 333 311 33 0 chrX 7778636 7778758 -169195382 + MIR SINE MIR 131 256 -6 2173 151 15 15 chrX 7780575 7780622 -169193518 - L1MB5 LINE L1 0 6174 6128 762 142 0 55 chrX 7780622 7780749 -169193391 + FLAM_C SINE Alu 1 120 -13 2173 151 15 15 chrX 7780749 7781099 -169193041 - L1MB5 LINE L1 -45 6129 5777 211 295 129 65 chrX 7781231 7781370 -169192770 + MIR3 SINE MIR 45 192 -16 262 333 145 0 chrX 7782877 7782994 -169191146 - MIR SINE MIR -74 188 55 180 0 0 0 chrX 7783135 7783155 -169190985 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 182 31 0 62 chrX 7783173 7783205 -169190935 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 907 174 82 31 chrX 7783850 7784046 -169190094 + MER3 DNA MER1_type 4 209 0 515 278 93 49 chrX 7784122 7784510 -169189630 - MLT1L LTR MaLR -11 604 200 1217 169 47 0 chrX 7785997 7786210 -169187930 - MER58A DNA MER1_type 0 224 2 1068 227 28 0 chrX 7786696 7786912 -169187228 + MER58A DNA MER1_type 1 222 -2 1210 148 5 49 chrX 7787801 7788024 -169186116 + AluJb SINE Alu 89 301 -11 262 340 120 5 chrX 7789351 7789542 -169184598 - L2 LINE L2 -494 2820 2608 842 271 25 60 chrX 7789846 7790249 -169183891 - L1MC4a LINE L1 -1896 5912 5524 1163 194 9 0 chrX 7790410 7790626 -169183514 + MER20 DNA MER1_type 1 218 -1 1944 178 140 88 chrX 7791160 7791761 -169182379 - MLT1E1 LTR MaLR -6 648 17 2072 129 9 31 chrX 7791798 7791830 -169182310 - AluSx SINE Alu -1 311 280 438 20 0 0 chrX 7791830 7791881 -169182259 + (TG)n Simple_repeat Simple_repeat 2 52 0 252 0 0 0 chrX 7791880 7791908 -169182232 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 2072 129 9 31 chrX 7791881 7792193 -169181947 - AluSx SINE Alu -32 280 1 248 316 86 29 chrX 7792332 7792506 -169181634 - MLT1H LTR MaLR -146 403 220 449 273 134 21 chrX 7793255 7793449 -169180691 + MIR SINE MIR 47 262 0 23 0 0 0 chrX 7793893 7793916 -169180224 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chrX 7795928 7795957 -169178183 + (TG)n Simple_repeat Simple_repeat 2 30 0 243 88 0 0 chrX 7795978 7796012 -169178128 + (TA)n Simple_repeat Simple_repeat 2 35 0 520 231 93 56 chrX 7796891 7797107 -169177033 - MLT1H LTR MaLR -300 249 26 639 185 31 87 chrX 7797873 7798068 -169176072 + MER20 DNA MER1_type 3 186 -33 1378 156 15 0 chrX 7798468 7798731 -169175409 - L1MD3 LINE L1 0 7995 7729 208 333 14 0 chrX 7798932 7799001 -169175139 - L2 LINE L2 0 3313 3244 416 307 99 40 chrX 7799185 7799595 -169174545 - L2 LINE L2 -278 2994 2573 2087 145 3 0 chrX 7800229 7800540 -169173600 - AluSx SINE Alu 0 312 1 986 217 17 43 chrX 7800580 7800810 -169173330 + MER58A DNA MER1_type 1 224 0 251 136 12 136 chrX 7802337 7802418 -169171722 - MLT1H LTR MaLR 0 549 479 1155 199 4 18 chrX 7802516 7802742 -169171398 + MER58A DNA MER1_type 1 223 -1 185 333 18 0 chrX 7803090 7803147 -169170993 - L2 LINE L2 -5 3308 3251 * 697 252 78 18 chrX 7803120 7803314 -169170826 - MIR SINE MIR -30 232 22 1134 219 0 0 chrX 7803314 7803538 -169170602 - MER58A DNA MER1_type 0 224 1 697 252 78 18 chrX 7803538 7803561 -169170579 - MIR SINE MIR -240 22 2 2116 100 61 50 chrX 7805177 7805537 -169168603 - THE1B LTR MaLR 0 364 1 241 150 0 0 chrX 7805835 7805875 -169168265 - MLT2E LTR ERVL -544 84 45 188 315 0 37 chrX 7806516 7806570 -169167570 + MIR SINE MIR 47 98 -164 295 271 172 0 chrX 7806579 7806701 -169167439 - MIR SINE MIR -3 259 117 997 181 34 15 chrX 7806843 7807047 -169167093 - MER3 DNA MER1_type -1 208 1 850 185 99 6 chrX 7810282 7810444 -169163696 + MER45A DNA AcHobo 1 177 -1 1008 199 28 9 chrX 7810927 7811138 -169163002 + MER20 DNA MER1_type 1 215 -4 21 0 0 0 chrX 7811275 7811296 -169162844 + AT_rich Low_complexity Low_complexity 1 21 0 613 211 111 6 chrX 7811988 7812159 -169161981 + MER5A DNA MER1_type 1 189 0 312 91 0 0 chrX 7812388 7812432 -169161708 + (T)n Simple_repeat Simple_repeat 1 44 0 1116 211 9 47 chrX 7812476 7812708 -169161432 - MER58A DNA MER1_type 0 224 2 251 360 58 58 chrX 7813682 7813943 -169160197 + L2 LINE L2 1711 1971 -1343 633 290 94 86 chrX 7813950 7814687 -169159453 + L2 LINE L2 2146 2888 -426 186 279 188 55 chrX 7814853 7815018 -169159122 + L2 LINE L2 3122 3308 -5 25 31 0 0 chrX 7815133 7815165 -169158975 + AT_rich Low_complexity Low_complexity 1 32 0 3054 228 88 34 chrX 7815805 7816070 -169158070 + L1M4 LINE L1 2204 2453 -3693 1876 201 48 38 chrX 7816070 7816462 -169157678 + MSTD LTR MaLR 1 396 0 3054 228 88 34 chrX 7816462 7816511 -169157629 + L1M4 LINE L1 2453 2498 -3648 1937 157 3 0 chrX 7816511 7816792 -169157348 + AluSx SINE Alu 5 289 -23 234 0 0 0 chrX 7816792 7816818 -169157322 + (GGA)n Simple_repeat Simple_repeat 3 28 0 1937 157 3 0 chrX 7816818 7816836 -169157304 + AluSx SINE Alu 289 305 -7 3054 228 88 34 chrX 7816836 7817661 -169156479 + L1M4 LINE L1 2498 3414 -2732 2304 78 0 45 chrX 7817661 7817970 -169156170 + AluSg SINE Alu 1 295 -15 3054 228 88 34 chrX 7817970 7818016 -169156124 + L1M4 LINE L1 3414 3456 -2690 2101 132 0 0 chrX 7818016 7818312 -169155828 + AluSx SINE Alu 1 296 -16 1515 204 102 1 chrX 7818360 7818699 -169155441 + L1ME1 LINE L1 5805 6333 -1 250 304 92 54 chrX 7818750 7819414 -169154726 + L1ME LINE L1 3287 3975 -2171 327 332 43 32 chrX 7819611 7819798 -169154342 + L1ME LINE L1 4620 4808 -1338 264 307 67 57 chrX 7820060 7820360 -169153780 + L1ME LINE L1 5295 5594 -527 2262 95 7 3 chrX 7820373 7820668 -169153472 + AluSq SINE Alu 1 296 -17 687 189 237 0 chrX 7820724 7820893 -169153247 - MER58C DNA MER1_type -6 209 1 2030 78 0 12 chrX 7821055 7821312 -169152828 + AluY SINE Alu 35 288 -23 2932 199 34 27 chrX 7821445 7822032 -169152108 + MLT1E LTR MaLR 1 591 -2 1057 166 37 32 chrX 7823927 7824144 -169149996 - MER20 DNA MER1_type 0 219 2 260 141 58 16 chrX 7824570 7824691 -169149449 + (TTAAA)n Simple_repeat Simple_repeat 2 127 0 294 350 41 41 chrX 7825238 7825361 -169148779 + L2 LINE L2 3141 3263 -9 278 169 15 0 chrX 7825362 7825427 -169148713 + GA-rich Low_complexity Low_complexity 3 68 0 342 228 44 9 chrX 7827738 7827852 -169146288 - L1ME4a LINE L1 -3 6118 6001 1284 149 13 53 chrX 7828191 7828419 -169145721 + MER20 DNA MER1_type 1 219 0 206 164 194 30 chrX 7828577 7828644 -169145496 + MIR SINE MIR 173 250 -12 1751 205 15 3 chrX 7829406 7829737 -169144403 + MER58B DNA MER1_type 2 336 -5 404 284 135 59 chrX 7830017 7830379 -169143761 - L2 LINE L2 0 3313 2218 538 313 95 3 chrX 7830522 7830826 -169143314 + ERVL LTR ERVL 3704 4035 -1729 979 262 59 57 chrX 7830870 7831342 -169142798 + MLT1J1 LTR MaLR 1 442 -4 1868 170 36 36 chrX 7831396 7831761 -169142379 + MLT1A1 LTR MaLR 1 365 0 767 229 0 24 chrX 7831814 7831980 -169142160 - MLT1E LTR MaLR -429 164 3 21 71 0 0 chrX 7832330 7832372 -169141768 + AT_rich Low_complexity Low_complexity 1 42 0 297 75 0 0 chrX 7832480 7832520 -169141620 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1477 198 215 73 chrX 7834038 7834559 -169139581 + MLT1G1 LTR MaLR 1 595 0 763 301 64 61 chrX 7834798 7835173 -169138967 - MER115 DNA AcHobo -259 434 59 182 390 21 0 chrX 7835469 7835564 -169138576 + MIR SINE MIR 25 121 -87 1322 204 14 0 chrX 7835779 7836000 -169138140 - MER58A DNA MER1_type 0 224 1 29 0 0 0 chrX 7836420 7836449 -169137691 + AT_rich Low_complexity Low_complexity 1 29 0 209 360 22 0 chrX 7836560 7836649 -169137491 - L3 LINE CR1 -5 1572 1482 473 260 7 47 chrX 7837282 7837432 -169136708 + MIR SINE MIR 68 211 -51 633 278 150 50 chrX 7837434 7837502 -169136638 + MLT1K LTR MaLR 1 61 -527 2304 235 72 30 chrX 7837502 7838069 -169136071 - MLT1E LTR MaLR 0 593 3 633 278 150 50 chrX 7838069 7838381 -169135759 + MLT1K LTR MaLR 61 419 -169 8095 21 11 0 chrX 7838678 7839568 -169134572 + L1PA4 LINE L1 5254 6153 -2 21 57 0 0 chrX 7843706 7843741 -169130399 + AT_rich Low_complexity Low_complexity 1 35 0 2193 122 0 0 chrX 7843789 7844084 -169130056 + AluSx SINE Alu 1 295 -17 984 244 37 9 chrX 7844109 7844326 -169129814 - MER58A DNA MER1_type -1 223 1 1574 186 19 6 chrX 7844335 7844653 -169129487 - MER33 DNA MER1_type -1 323 2 2467 83 3 3 chrX 7845610 7845923 -169128217 + AluSp SINE Alu 1 313 0 2029 190 47 30 chrX 7846131 7846558 -169127582 + MER90 LTR ERV1 1 434 -141 2937 163 39 0 chrX 7846572 7847062 -169127078 - MER68 LTR ERV1 -53 509 1 781 211 21 0 chrX 7847062 7847201 -169126939 + MER90 LTR ERV1 473 614 0 202 216 0 0 chrX 7847416 7847453 -169126687 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 302 265 49 20 chrX 7847742 7847844 -169126296 - MIR SINE MIR -137 125 21 26 0 0 0 chrX 7850604 7850630 -169123510 + AT_rich Low_complexity Low_complexity 1 26 0 1918 159 30 0 chrX 7850630 7850931 -169123209 + AluJb SINE Alu 1 310 -2 213 39 0 0 chrX 7851057 7851083 -169123057 + (T)n Simple_repeat Simple_repeat 1 26 0 6148 55 0 11 chrX 7851083 7851841 -169122299 - L1PA5 LINE L1 -44 6110 5361 1872 151 0 31 chrX 7852033 7852350 -169121790 - AluJo SINE Alu -5 307 1 209 333 0 0 chrX 7852735 7852792 -169121348 + MIR3 SINE MIR 151 207 -1 6420 176 31 31 chrX 7853027 7853616 -169120524 + L1MB3 LINE L1 3839 4427 -1756 2539 51 3 16 chrX 7853616 7853931 -169120209 + AluY SINE Alu 1 311 0 6420 176 31 31 chrX 7853931 7854820 -169119320 + L1MB3 LINE L1 4427 5327 -856 2929 118 29 2 chrX 7854820 7855237 -169118903 + MSTA LTR MaLR 1 428 0 6420 176 31 31 chrX 7855237 7856093 -169118047 + L1MB3 LINE L1 5327 6182 -1 623 267 120 4 chrX 7857051 7857276 -169116864 - MLT1I LTR MaLR -2 407 157 4470 254 60 46 chrX 7858531 7859039 -169115101 + HAL1 LINE L1 2 501 -2006 1058 205 38 0 chrX 7859039 7859249 -169114891 + MER20 DNA MER1_type 1 218 -1 4470 254 60 46 chrX 7859249 7860163 -169113977 + HAL1 LINE L1 501 1456 -1051 2361 86 0 10 chrX 7860163 7860464 -169113676 + AluSc SINE Alu 1 298 -11 4470 254 60 46 chrX 7860464 7860788 -169113352 + HAL1 LINE L1 1456 1774 -733 939 289 99 46 chrX 7860863 7861448 -169112692 + HAL1 LINE L1 1889 2504 -3 242 325 77 26 chrX 7861472 7861589 -169112551 - L2 LINE L2 -22 3291 3169 303 210 120 20 chrX 7862806 7862906 -169111234 + MIR SINE MIR 20 129 -133 186 196 54 36 chrX 7864112 7864168 -169109972 - MER5A DNA MER1_type -8 181 125 345 172 0 0 chrX 7864194 7864258 -169109882 + T-rich Low_complexity Low_complexity 5 68 0 1983 147 33 0 chrX 7864268 7864568 -169109572 - AluSx SINE Alu 0 312 3 342 163 0 0 chrX 7864576 7864644 -169109496 - MER5A DNA MER1_type -118 71 4 1080 233 5 5 chrX 7864659 7864878 -169109262 + MER58A DNA MER1_type 5 223 -1 367 280 8 25 chrX 7865519 7865637 -169108503 - L2 LINE L2 -3 3269 3154 1230 46 0 0 chrX 7867212 7867364 -169106776 - L1PA4 LINE L1 -11 6144 5993 436 287 191 19 chrX 7867549 7867925 -169106215 - MLT1H1 LTR MaLR 0 555 115 3471 188 72 38 chrX 7868079 7868903 -169105237 - MER21B LTR ERV1 -11 852 1 733 59 20 0 chrX 7870961 7871063 -169103077 - L1PA4 LINE L1 -1137 5009 4906 7463 31 1 1 chrX 7871063 7872199 -169101941 + L1PA4 LINE L1 5011 6146 -9 397 153 59 0 chrX 7872933 7873018 -169101122 + MER53 DNA DNA 99 188 -1 2622 161 11 30 chrX 7873163 7873629 -169100511 + MSTB2 LTR MaLR 1 457 0 377 258 189 0 chrX 7873850 7873982 -169100158 - MER20 DNA MER1_type -56 163 7 344 258 124 0 chrX 7874141 7874238 -169099902 + L2 LINE L2 3201 3309 -4 369 0 0 0 chrX 7874373 7874414 -169099726 + (CA)n Simple_repeat Simple_repeat 1 41 0 181 268 18 71 chrX 7874546 7874602 -169099538 - L2 LINE L2 -19 3253 3201 426 274 113 62 chrX 7874789 7875179 -169098961 - MLT1J2 LTR MaLR -18 432 23 22 35 0 0 chrX 7877356 7877385 -169096755 + AT_rich Low_complexity Low_complexity 1 29 0 822 253 0 36 chrX 7877951 7878172 -169095968 - MER58A DNA MER1_type 0 224 12 440 276 10 0 chrX 7878704 7878802 -169095338 + MIR SINE MIR 4 102 -160 417 241 36 72 chrX 7878809 7878975 -169095165 + MLT1J LTR MaLR 27 186 -325 302 257 134 31 chrX 7878980 7879341 -169094799 - L1MEd LINE L1 -4843 1184 926 401 379 67 29 chrX 7879399 7879713 -169094427 - L1MEd LINE L1 -5261 858 533 399 258 115 52 chrX 7880117 7880404 -169093736 + MLT1J LTR MaLR 203 507 -4 508 192 253 61 chrX 7880563 7880792 -169093348 + MLT1H LTR MaLR 261 533 -16 23 54 0 0 chrX 7880839 7880876 -169093264 + AT_rich Low_complexity Low_complexity 1 37 0 291 380 20 0 chrX 7881248 7881348 -169092792 + MIR SINE MIR 30 131 -77 230 235 296 0 chrX 7881340 7881438 -169092702 + L2 LINE L2 3136 3262 -10 * 23 33 0 0 chrX 7881833 7881863 -169092277 + AT_rich Low_complexity Low_complexity 1 30 0 658 269 36 0 chrX 7884969 7885162 -169088978 + MLT1J2 LTR MaLR 6 205 -245 657 261 103 54 chrX 7885214 7885266 -169088874 - MLT1H LTR MaLR -16 533 485 1201 209 8 4 chrX 7885266 7885501 -169088639 + MER8 DNA MER2_type 2 237 -2 657 261 103 54 chrX 7885501 7885709 -169088431 - MLT1H LTR MaLR -64 485 260 180 0 0 0 chrX 7886295 7886315 -169087825 + (A)n Simple_repeat Simple_repeat 1 20 0 2816 140 81 0 chrX 7887101 7887468 -169086672 - L1MB5 LINE L1 -18 6156 5737 258 105 0 0 chrX 7887468 7887506 -169086634 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 2816 140 81 0 chrX 7887506 7887631 -169086509 - L1MB5 LINE L1 -437 5737 5624 991 156 11 11 chrX 7887631 7887810 -169086330 + MER58A DNA MER1_type 46 224 0 2167 116 0 0 chrX 7887950 7888293 -169085847 + AluSx SINE Alu 1 312 0 359 233 0 150 chrX 7888567 7888637 -169085503 - MER5A DNA MER1_type -63 126 84 2421 74 3 7 chrX 7888637 7888946 -169085194 - AluSp SINE Alu -5 308 1 359 233 0 150 chrX 7888946 7889008 -169085132 - MER5A DNA MER1_type -105 84 14 528 228 13 0 chrX 7889040 7889159 -169084981 - MER5B DNA MER1_type -17 161 46 771 189 31 42 chrX 7890127 7890318 -169083822 + MER5A DNA MER1_type 1 189 0 298 319 92 32 chrX 7890495 7890746 -169083394 - MLT1I LTR MaLR -125 284 19 2777 94 8 3 chrX 7891653 7892026 -169082114 - THE1C LTR MaLR 0 375 1 349 274 71 9 chrX 7892188 7892301 -169081839 + MIR SINE MIR 47 166 -96 21 57 0 0 chrX 7892598 7892633 -169081507 + AT_rich Low_complexity Low_complexity 1 35 0 2520 207 65 26 chrX 7893035 7893606 -169080534 + MLT1E LTR MaLR 1 593 0 548 227 117 0 chrX 7894779 7894907 -169079233 + MLT1E LTR MaLR 1 143 -450 483 200 23 0 chrX 7895078 7895184 -169078956 + MER5A DNA MER1_type 4 112 -77 589 122 30 69 chrX 7895684 7895758 -169078382 + L1MD3 LINE L1 7870 7938 -57 2197 129 0 7 chrX 7895758 7896067 -169078073 - AluSx SINE Alu -5 307 1 589 122 30 69 chrX 7896067 7896123 -169078017 + L1MD3 LINE L1 7938 7995 0 433 238 56 134 chrX 7896561 7897061 -169077079 - LTR67 LTR ERVL -2 555 95 394 284 0 18 chrX 7897078 7897187 -169076953 - MER81 DNA DNA 0 114 8 369 0 0 0 chrX 7897567 7897608 -169076532 + (CA)n Simple_repeat Simple_repeat 1 41 0 2847 142 21 19 chrX 7897674 7898159 -169075981 + MER66B LTR ERV1 1 486 0 852 188 67 58 chrX 7898612 7898769 -169075371 - MER63A DNA MER1_type -1478 210 49 2082 141 3 0 chrX 7898769 7899060 -169075080 - AluSx SINE Alu -20 292 1 852 188 67 58 chrX 7899060 7899110 -169075030 - MER63A DNA MER1_type -1639 49 1 443 253 51 56 chrX 7899792 7899905 -169074235 - MLT1L LTR MaLR -349 266 153 1195 139 8 92 chrX 7899905 7900143 -169073997 - MER20 DNA MER1_type 0 219 2 443 253 51 56 chrX 7900143 7900207 -169073933 - MLT1L LTR MaLR -462 153 90 3739 244 46 37 chrX 7900283 7901768 -169072372 + L2 LINE L2 1816 3311 -2 621 229 21 47 chrX 7901968 7902204 -169071936 - L1MC5 LINE L1 -548 7413 7184 463 276 101 60 chrX 7902691 7902908 -169071232 - L1MDa LINE L1 -3688 2441 2216 227 264 0 0 chrX 7903413 7903485 -169070655 - L1MDa LINE L1 -4625 1504 1433 612 249 74 11 chrX 7903590 7903859 -169070281 - L1MDa LINE L1 -4869 1250 965 336 314 33 71 chrX 7903875 7904085 -169070055 - L1ME3A LINE L1 -2 6168 5967 288 227 73 92 chrX 7904146 7904419 -169069721 - L1MDa LINE L1 -5167 952 685 247 254 0 15 chrX 7904520 7904587 -169069553 - L1MDa LINE L1 -5598 521 456 244 246 0 0 chrX 7904588 7904645 -169069495 + (TTA)n Simple_repeat Simple_repeat 1 57 0 1256 308 40 4 chrX 7905046 7905550 -169068590 + L1MC4a LINE L1 5405 5926 -1882 367 281 74 15 chrX 7906861 7907064 -169067076 - L1ME3A LINE L1 -399 5763 5549 1269 258 39 53 chrX 7907169 7907657 -169066483 + LTR16C LTR ERVL 1 481 -10 2247 130 0 0 chrX 7907978 7908286 -169065854 + AluSx SINE Alu 1 308 -4 180 0 0 0 chrX 7908337 7908357 -169065783 + (T)n Simple_repeat Simple_repeat 1 20 0 14819 117 37 13 chrX 7908966 7911268 -169062872 - Tigger1 DNA MER2_type 0 2418 55 315 19 38 19 chrX 7911268 7911321 -169062819 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 14819 117 37 13 chrX 7911321 7911376 -169062764 - Tigger1 DNA MER2_type -2363 55 3 395 285 31 23 chrX 7911441 7911571 -169062569 + MIR SINE MIR 47 177 -85 307 256 88 60 chrX 7911833 7912150 -169061990 - L1ME4a LINE L1 -188 5933 5608 989 43 0 0 chrX 7912154 7912271 -169061869 - AluY SINE Alu -1 310 194 279 239 14 0 chrX 7912271 7912342 -169061798 - L1ME4a LINE L1 -506 5615 5544 818 172 18 24 chrX 7914082 7914251 -169059889 - MER20 DNA MER1_type 0 219 52 473 124 33 91 chrX 7964696 7964817 -169009323 - L1MA9 LINE L1 -298 6014 5901 290 237 122 53 chrX 7965294 7965425 -169008715 - MER5B DNA MER1_type 0 178 39 1747 167 21 7 chrX 7966584 7966871 -169007269 + AluJb SINE Alu 1 291 -21 182 323 32 0 chrX 7967785 7967847 -169006293 + L2 LINE L2 339 402 -2912 1158 190 9 0 chrX 7967851 7968067 -169006073 - MER58A DNA MER1_type 0 224 7 367 353 25 34 chrX 7968962 7969200 -169004940 + L2 LINE L2 2819 3054 -218 200 271 0 0 chrX 7969251 7969299 -169004841 - L2 LINE L2 -15 3298 3251 2877 206 64 18 chrX 7969916 7970539 -169003601 + MER82 DNA MER2_type 1 652 -1 2360 95 0 0 chrX 7972072 7972368 -169001772 + AluSx SINE Alu 1 296 -16 470 198 78 54 chrX 7972379 7972538 -169001602 + MLT1H LTR MaLR 382 589 -6 227 313 83 28 chrX 7973235 7973379 -169000761 + L2 LINE L2 2934 3085 -187 2011 152 16 7 chrX 7973409 7973718 -169000422 - AluJb SINE Alu 0 312 1 828 210 54 114 chrX 7973812 7973991 -169000149 - MLT1G LTR MaLR -190 400 212 2626 67 3 0 chrX 7973991 7974303 -168999837 - AluSp SINE Alu 0 313 1 828 210 54 114 chrX 7974303 7974577 -168999563 - MLT1G LTR MaLR -378 212 11 246 247 86 11 chrX 7974605 7974698 -168999442 - L1ME4a LINE L1 -45 6076 5977 1001 266 24 20 chrX 7974805 7975053 -168999087 + MIR SINE MIR 9 257 -5 213 60 20 40 chrX 7975918 7975968 -168998172 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 3333 146 26 36 chrX 7976476 7977080 -168997060 - L1MB7 LINE L1 -11 6173 5576 1396 246 66 22 chrX 7977099 7977436 -168996704 - L1ME3A LINE L1 -5 6165 5801 1656 203 15 12 chrX 7977436 7977776 -168996364 - MER58B DNA MER1_type 0 341 1 1396 246 66 22 chrX 7977776 7977890 -168996250 - L1ME3A LINE L1 -369 5801 5694 934 228 13 35 chrX 7978282 7978510 -168995630 - MER58A DNA MER1_type -1 223 1 239 237 0 34 chrX 7978524 7978583 -168995557 - L2 LINE L2 -18 3295 3239 876 118 0 0 chrX 7978811 7978947 -168995193 + (GA)n Simple_repeat Simple_repeat 2 137 0 259 233 58 35 chrX 7979774 7979860 -168994280 + L1ME3A LINE L1 5864 5951 -219 205 307 67 0 chrX 7980197 7980272 -168993868 + MIR SINE MIR 106 185 -77 764 223 31 0 chrX 7980701 7980894 -168993246 + MER20 DNA MER1_type 14 212 -7 246 207 35 0 chrX 7981067 7981125 -168993015 - MER5A DNA MER1_type -80 109 50 582 256 18 0 chrX 7981317 7981481 -168992659 + MER5B DNA MER1_type 5 171 -7 215 178 44 0 chrX 7981533 7981578 -168992562 - MER5A DNA MER1_type -80 109 63 225 65 0 0 chrX 7982140 7982171 -168991969 + (CA)n Simple_repeat Simple_repeat 1 31 0 268 177 65 16 chrX 7982548 7982610 -168991530 - MER68 LTR ERV1 -128 434 370 * 603 247 130 53 chrX 7982595 7982653 -168991487 + LTR16C LTR ERVL 226 278 -213 3499 168 7 2 chrX 7982653 7983212 -168990928 + MER68 LTR ERV1 1 562 0 603 247 130 53 chrX 7983212 7983400 -168990740 + LTR16C LTR ERVL 278 491 0 255 243 37 37 chrX 7983496 7983603 -168990537 + L1ME3A LINE L1 5069 5175 -971 2253 89 0 20 chrX 7983616 7983919 -168990221 + AluSx SINE Alu 1 297 -15 877 235 11 0 chrX 7984078 7984265 -168989875 - MER5A DNA MER1_type 0 189 1 28 29 0 0 chrX 7984343 7984378 -168989762 + AT_rich Low_complexity Low_complexity 1 35 0 215 351 78 0 chrX 7984415 7984492 -168989648 + L2 LINE L2 3121 3203 -69 2449 90 7 0 chrX 7984716 7985026 -168989114 + AluSx SINE Alu 1 312 0 25 65 0 0 chrX 7985160 7985206 -168988934 + AT_rich Low_complexity Low_complexity 1 46 0 326 250 75 19 chrX 7985657 7985817 -168988323 + L1MDa LINE L1 1609 1777 -4763 1057 217 96 35 chrX 7985826 7986171 -168987969 + L1ME3A LINE L1 5802 6167 -3 692 201 126 0 chrX 7986922 7987096 -168987044 - MLT1F LTR MaLR -4 538 343 1058 206 50 21 chrX 7987128 7987366 -168986774 - MLT1F LTR MaLR -291 251 7 236 137 260 0 chrX 7988155 7988228 -168985912 - MIR SINE MIR -124 138 47 566 178 0 0 chrX 7988406 7988507 -168985633 - MLT1B LTR MaLR -7 383 283 586 234 0 0 chrX 7988518 7988646 -168985494 - MLT1B LTR MaLR -262 128 1 269 219 0 0 chrX 7989556 7989620 -168984520 - L2 LINE L2 -328 2985 2922 264 314 29 0 chrX 7989776 7989878 -168984262 - L2 LINE L2 -336 2977 2873 591 282 64 15 chrX 7990169 7990650 -168983490 + L2 LINE L2 2553 3061 -252 1156 178 5 0 chrX 7990826 7991034 -168983106 + MER20 DNA MER1_type 11 219 0 2253 103 7 0 chrX 7991086 7991387 -168982753 + AluSx SINE Alu 1 303 -9 192 329 129 0 chrX 7991683 7991768 -168982372 - MER5A DNA MER1_type -33 156 61 325 313 121 6 chrX 7991785 7991951 -168982189 - L1MC4 LINE L1 0 8042 7858 1232 192 12 8 chrX 7991952 7992202 -168981938 + Charlie1b DNA MER1_type 5 255 -268 1120 246 112 35 chrX 7992306 7992471 -168981669 - MLT1F1 LTR MaLR 0 567 416 2361 95 0 3 chrX 7992471 7992775 -168981365 + AluSx SINE Alu 1 303 -9 1120 246 112 35 chrX 7992775 7993073 -168981067 - MLT1F1 LTR MaLR -151 416 68 283 256 39 62 chrX 7993256 7993385 -168980755 - L1MC4 LINE L1 -373 7669 7544 285 51 0 0 chrX 7993617 7993656 -168980484 + (GA)n Simple_repeat Simple_repeat 1 39 0 281 250 100 10 chrX 7994157 7994257 -168979883 - MIR SINE MIR -71 191 83 327 319 48 66 chrX 7994535 7994593 -168979547 - MIR3 SINE MIR -1 207 149 1366 126 14 31 chrX 7994593 7994816 -168979324 + MER20 DNA MER1_type 1 219 0 327 319 48 66 chrX 7994816 7994923 -168979217 - MIR3 SINE MIR -59 149 45 445 296 65 46 chrX 7998603 7999019 -168975121 + L1ME4a LINE L1 5697 6120 -1 282 359 34 0 chrX 7999225 7999342 -168974798 - L3b LINE CR1 -209 1374 1254 1062 113 0 0 chrX 7999362 7999503 -168974637 - FRAM SINE Alu -16 160 20 860 151 65 121 chrX 7999606 7999838 -168974302 + MER20 DNA MER1_type 1 219 0 261 136 45 0 chrX 8000251 8000317 -168973823 + (TA)n Simple_repeat Simple_repeat 1 69 0 1735 109 29 0 chrX 8000317 8000556 -168973584 - AluSx SINE Alu -21 291 46 267 279 95 68 chrX 8001055 8001202 -168972938 + MIR SINE MIR 74 224 -38 431 138 9 207 chrX 8001481 8001603 -168972537 + MER96B DNA MER1_type? 244 306 -111 2514 99 0 0 chrX 8001603 8001916 -168972224 - AluSq SINE Alu 0 313 1 431 138 9 207 chrX 8001916 8002010 -168972130 + MER96B DNA MER1_type? 306 417 0 225 0 0 0 chrX 8002123 8002148 -168971992 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 319 296 86 49 chrX 8002634 8002796 -168971344 + MER63B DNA MER1_type 1 168 -268 876 183 47 0 chrX 8002950 8003141 -168970999 - MER3 DNA MER1_type -1 208 9 2392 183 40 36 chrX 8003505 8004003 -168970137 + MLT1D LTR MaLR 4 503 -2 254 271 54 124 chrX 8004015 8004223 -168969917 - L2 LINE L2 0 3272 3102 1717 173 78 30 chrX 8004223 8004594 -168969546 + MLT1B LTR MaLR 2 390 0 254 271 54 124 chrX 8004594 8004773 -168969367 - L2 LINE L2 -170 3102 2912 2149 129 7 3 chrX 8004834 8005144 -168968996 - AluSq SINE Alu 0 313 3 2447 166 37 68 chrX 8005170 8005412 -168968728 + MER21B LTR ERV1 66 314 -549 2072 55 0 0 chrX 8005412 8005669 -168968471 + L1PA5 LINE L1 5895 6151 -3 2447 166 37 68 chrX 8005669 8005987 -168968153 + MER21B LTR ERV1 314 609 -254 2354 91 3 0 chrX 8005990 8006287 -168967853 - AluSg SINE Alu -12 298 1 2011 139 3 10 chrX 8006289 8006584 -168967556 - AluJo SINE Alu -19 293 1 534 295 91 9 chrX 8006712 8007054 -168967086 + L1MC4a LINE L1 4399 4768 -1378 806 258 83 61 chrX 8007069 8007306 -168966834 + L1MC4a LINE L1 5419 5649 -2159 762 143 15 15 chrX 8007306 8007439 -168966701 + FLAM_C SINE Alu 1 133 0 806 258 83 61 chrX 8007439 8007492 -168966648 + L1MC4a LINE L1 5649 5699 -2109 2413 82 0 0 chrX 8007492 8007784 -168966356 - AluSg SINE Alu -18 292 1 806 258 83 61 chrX 8007784 8007853 -168966287 + L1MC4a LINE L1 5699 5787 -2021 239 136 25 86 chrX 8007901 8007982 -168966158 + MLT1C-int LTR MaLR 1295 1370 -1 976 240 103 25 chrX 8008004 8008407 -168965733 + MLT1C LTR MaLR 21 390 -6 707 221 0 0 chrX 8008431 8008562 -168965578 - FLAM_A SINE Alu -2 131 1 336 215 75 0 chrX 8008564 8008671 -168965469 + L1MC4a LINE L1 5860 5974 -1834 228 324 0 0 chrX 8008674 8008748 -168965392 + (TA)n Simple_repeat Simple_repeat 2 75 0 2237 108 0 0 chrX 8008853 8009139 -168965001 + AluSx SINE Alu 5 290 -22 3390 169 77 6 chrX 8009145 8009847 -168964293 + L1MB8 LINE L1 5427 6178 0 485 252 170 8 chrX 8009826 8010191 -168963949 + L1MC5 LINE L1 7489 7912 -49 * 1292 200 0 0 chrX 8011022 8011252 -168962888 + AluJo SINE Alu 76 305 -7 352 261 0 0 chrX 8013499 8013568 -168960572 + L2 LINE L2 3245 3313 0 1677 164 88 6 chrX 8013630 8013972 -168960168 + L1MB5 LINE L1 5799 6168 -6 324 214 19 48 chrX 8013978 8014081 -168960059 + L1ME3A LINE L1 5887 5986 -184 1687 173 33 0 chrX 8014221 8014493 -168959647 + AluJb SINE Alu 1 281 -31 304 280 98 76 chrX 8014503 8014728 -168959412 + L1ME4a LINE L1 5673 5902 -219 1990 149 10 0 chrX 8014825 8015120 -168959020 + AluSx SINE Alu 1 298 -14 243 0 0 0 chrX 8015379 8015406 -168958734 + (T)n Simple_repeat Simple_repeat 1 27 0 316 309 10 0 chrX 8016248 8016345 -168957795 + L1ME4a LINE L1 5493 5590 -531 349 267 166 32 chrX 8016385 8016572 -168957568 + L1ME4a LINE L1 5685 5896 -225 897 225 14 28 chrX 8016969 8017187 -168956953 + MER20 DNA MER1_type 4 218 -1 2308 108 0 0 chrX 8017207 8017504 -168956636 - AluSx SINE Alu -15 297 1 234 0 0 0 chrX 8017617 8017643 -168956497 + (CA)n Simple_repeat Simple_repeat 2 27 0 531 0 0 0 chrX 8017643 8017702 -168956438 + (TA)n Simple_repeat Simple_repeat 2 60 0 236 29 0 29 chrX 8018314 8018348 -168955792 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 461 264 40 40 chrX 8019494 8019668 -168954472 + MER5B DNA MER1_type 5 178 0 1058 263 79 71 chrX 8020389 8020780 -168953360 + L2 LINE L2 2288 2685 -629 1977 199 37 2 chrX 8020780 8021212 -168952928 + L1MB5 LINE L1 5720 6166 -8 1058 263 79 71 chrX 8021212 8021329 -168952811 + L2 LINE L2 2685 2800 -514 1020 154 82 82 chrX 8021475 8021651 -168952489 - L1MB2 LINE L1 -1 6170 5992 4888 133 20 19 chrX 8021651 8021870 -168952270 + LTR39 LTR ERV1 1 218 -565 2247 115 0 13 chrX 8021870 8022184 -168951956 + AluSx SINE Alu 1 310 -2 4888 133 20 19 chrX 8022184 8022746 -168951394 + LTR39 LTR ERV1 218 783 0 1020 154 82 82 chrX 8022746 8022849 -168951291 - L1MB2 LINE L1 -178 5993 5891 802 11 0 0 chrX 8022909 8022998 -168951142 + AluY SINE Alu 178 266 -45 264 158 13 145 chrX 8023003 8023079 -168951061 - MER21B LTR ERV1 -789 74 9 1916 125 23 38 chrX 8023079 8023424 -168950716 - L1MB2 LINE L1 -282 5889 5550 367 278 32 8 chrX 8023682 8023808 -168950332 + L1MC4 LINE L1 7913 8041 -1 582 260 108 28 chrX 8025376 8025626 -168948514 + L1MB8 LINE L1 5909 6178 0 1513 140 156 0 chrX 8026851 8027101 -168947039 + AluJo SINE Alu 1 289 -13 315 71 0 0 chrX 8027122 8027164 -168946976 + (TG)n Simple_repeat Simple_repeat 1 42 0 2116 107 0 14 chrX 8027164 8027445 -168946695 - AluSx SINE Alu -33 279 3 628 277 33 5 chrX 8027858 8028042 -168946098 - MER53 DNA DNA 0 189 1 302 247 14 0 chrX 8028226 8028299 -168945841 + GA-rich Low_complexity Low_complexity 1 74 0 2361 106 0 0 chrX 8030695 8031006 -168943134 - AluSx SINE Alu -1 311 1 1073 107 0 0 chrX 8031047 8031178 -168942962 + AluSq/x SINE Alu 1 131 -181 1857 178 10 0 chrX 8031185 8031494 -168942646 + AluJo SINE Alu 1 312 0 320 328 121 23 chrX 8035774 8035948 -168938192 - MIR3 SINE MIR -13 195 5 719 151 227 54 chrX 8036008 8036193 -168937947 - MER20 DNA MER1_type -1 218 2 279 328 51 26 chrX 8037717 8037912 -168936228 + MIR SINE MIR 13 212 -50 918 182 4 2 chrX 8038585 8038808 -168935332 + (TGGG)n Simple_repeat Simple_repeat 2 223 -240 204 204 37 0 chrX 8038808 8038862 -168935278 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 918 182 4 2 chrX 8038862 8038874 -168935266 + (TGGG)n Simple_repeat Simple_repeat 223 463 0 262 258 11 67 chrX 8039135 8039224 -168934916 + L2 LINE L2 3230 3313 0 417 192 8 84 chrX 8039365 8039520 -168934620 + MIR SINE MIR 2 145 -67 322 278 0 14 chrX 8039841 8039913 -168934227 + Charlie1 DNA MER1_type 1 71 -2690 * 1008 261 52 6 chrX 8039911 8040148 -168933992 + Charlie1 DNA MER1_type 2343 2601 -160 2058 160 0 0 chrX 8040148 8040455 -168933685 - AluJb SINE Alu -5 307 1 1008 261 52 6 chrX 8040455 8040547 -168933593 + Charlie1 DNA MER1_type 2601 2687 -74 462 163 23 0 chrX 8040615 8040701 -168933439 + Charlie1 DNA MER1_type 2674 2761 0 2636 20 0 23 chrX 8040818 8041117 -168933023 + AluY SINE Alu 1 292 -19 274 339 56 17 chrX 8046110 8046290 -168927850 - MER117 DNA MER1_type -7 190 4 2298 90 0 75 chrX 8049703 8050037 -168924103 + AluSx SINE Alu 1 309 -3 2874 129 33 87 chrX 8050237 8050779 -168923361 + MLT2B2 LTR ERVL 3 515 0 369 259 45 9 chrX 8052069 8052181 -168921959 + L1MC4 LINE L1 6612 6727 -1315 312 287 264 39 chrX 8053261 8053571 -168920569 - L2 LINE L2 0 3313 2934 1936 192 123 9 chrX 8053575 8054022 -168920118 - MLT1D LTR MaLR 0 505 8 291 260 122 8 chrX 8054095 8054218 -168919922 - L2 LINE L2 -387 2927 2791 402 246 27 0 chrX 8054265 8054375 -168919765 - MER20 DNA MER1_type -3 216 104 2604 56 0 0 chrX 8056785 8057088 -168917052 + AluY SINE Alu 1 303 -8 1634 139 82 36 chrX 8057587 8057867 -168916273 - AluJo SINE Alu -19 293 1 183 221 110 110 chrX 8057960 8058096 -168916044 - L3b LINE CR1 -265 1318 1183 1723 222 156 29 chrX 8058301 8058827 -168915313 + MLT1E LTR MaLR 1 593 0 577 240 39 77 chrX 8059981 8060214 -168913926 + MER58A DNA MER1_type 1 224 0 1940 149 6 32 chrX 8061249 8061565 -168912575 - AluJo SINE Alu -4 308 1 539 220 10 0 chrX 8062174 8062274 -168911866 - MER5A DNA MER1_type -34 155 55 304 306 16 8 chrX 8062748 8062869 -168911271 + L1MC4a LINE L1 5780 5901 -1907 981 164 99 5 chrX 8063062 8063275 -168910865 + MLT1C LTR MaLR 1 233 -234 1926 151 14 0 chrX 8063283 8063567 -168910573 + AluJb SINE Alu 12 299 -13 763 93 14 72 chrX 8063567 8063706 -168910434 - MER2 DNA MER2_type -213 132 2 198 167 0 0 chrX 8063732 8063768 -168910372 + (TG)n Simple_repeat Simple_repeat 2 37 0 228 163 0 0 chrX 8064577 8064620 -168909520 + CT-rich Low_complexity Low_complexity 2 44 0 569 255 39 39 chrX 8064978 8065182 -168908958 + MIR SINE MIR 31 234 -28 270 290 42 3 chrX 8066536 8066635 -168907505 - MIR SINE MIR -58 150 43 725 280 109 18 chrX 8067893 8068232 -168905908 - L2 LINE L2 -31 3282 2913 2243 95 0 7 chrX 8068642 8068948 -168905192 + AluSx SINE Alu 1 304 -8 1127 250 5 24 chrX 8069264 8069448 -168904692 + L1ME LINE L1 5409 5592 -578 1268 155 8 76 chrX 8069448 8069699 -168904441 + MER46A DNA MER2_type 2 235 -1 1127 250 5 24 chrX 8069699 8069806 -168904334 + L1ME LINE L1 5592 5699 -471 888 200 49 42 chrX 8069891 8070176 -168903964 + L1MC5 LINE L1 7249 7535 -426 491 248 103 25 chrX 8070249 8070491 -168903649 + L1MC5 LINE L1 7664 7924 -37 2172 104 13 7 chrX 8072025 8072332 -168901808 + AluSx SINE Alu 1 309 -3 2133 106 3 0 chrX 8072715 8073016 -168901124 + AluSq SINE Alu 1 302 -11 1533 199 87 9 chrX 8073336 8073683 -168900457 + MLT1A2 LTR MaLR 1 374 0 340 191 44 15 chrX 8073947 8074015 -168900125 + MER3 DNA MER1_type 7 76 -133 624 216 9 0 chrX 8074016 8074132 -168900008 + MER20 DNA MER1_type 1 117 -102 1030 117 0 6 chrX 8074148 8074311 -168899829 - AluSg/x SINE Alu -1 311 150 1579 79 0 0 chrX 8074311 8074513 -168899627 - AluSx SINE Alu -110 202 1 458 214 45 0 chrX 8074609 8074721 -168899419 + MER3 DNA MER1_type 70 139 -70 338 291 64 35 chrX 8075389 8075561 -168898579 + MER5A DNA MER1_type 13 189 0 227 263 71 0 chrX 8076376 8076475 -168897665 + L1ME4a LINE L1 5973 6078 -43 2278 80 0 3 chrX 8077928 8078227 -168895913 + AluSc SINE Alu 1 298 -11 299 221 90 62 chrX 8078447 8078592 -168895548 + MLT1L LTR MaLR 465 613 -2 27 29 0 0 chrX 8078758 8078792 -168895348 + AT_rich Low_complexity Low_complexity 1 34 0 2027 119 3 3 chrX 8078893 8079188 -168894952 - AluSx SINE Alu -17 295 1 1961 157 0 0 chrX 8080460 8080772 -168893368 + AluJb SINE Alu 1 312 0 484 224 191 0 chrX 8081055 8081202 -168892938 + MER5B DNA MER1_type 1 175 -3 966 215 47 19 chrX 8081213 8081427 -168892713 - MER58A DNA MER1_type 0 224 5 215 267 33 0 chrX 8081432 8081492 -168892648 - L3 LINE CR1 -45 1532 1471 2060 87 11 0 chrX 8082119 8082438 -168891702 + AluSc SINE Alu 1 322 0 306 359 10 0 chrX 8082741 8082844 -168891296 + MIR SINE MIR 48 151 -111 847 157 0 15 chrX 8083973 8084107 -168890033 - FLAM_C SINE Alu -1 132 1 294 253 13 0 chrX 8084278 8084357 -168889783 + MER116 DNA Mariner 1 80 0 1615 183 88 21 chrX 8084475 8084489 -168889651 + L1M4 LINE L1 2711 2723 -3423 2153 89 0 26 chrX 8084489 8084793 -168889347 + AluSx SINE Alu 1 296 -16 1615 183 88 21 chrX 8084793 8085210 -168888930 + L1M4 LINE L1 2723 3171 -2975 430 225 0 50 chrX 8085250 8085370 -168888770 - MLT1J2 LTR MaLR -336 114 1 1648 219 83 23 chrX 8087140 8087574 -168886566 + MLT1D LTR MaLR 1 460 -45 1890 161 15 6 chrX 8088496 8088832 -168885308 - L1MB7 LINE L1 -19 6165 5827 2182 141 78 15 chrX 8088832 8089228 -168884912 + Tigger2a DNA MER2_type 2 422 -12 1528 150 7 29 chrX 8089228 8089501 -168884639 - L1MB7 LINE L1 -357 5827 5561 238 212 15 0 chrX 8089509 8089575 -168884565 + L1ME4a LINE L1 5711 5777 -344 329 305 65 0 chrX 8089837 8089991 -168884149 + L1ME4a LINE L1 5860 6023 -98 1718 128 0 110 chrX 8090724 8091052 -168883088 + AluJb SINE Alu 5 296 -6 361 278 93 20 chrX 8091656 8091807 -168882333 - Tigger8 DNA MER2_type -270 396 235 2105 115 0 3 chrX 8092694 8092999 -168881141 - AluSx SINE Alu -8 304 1 805 69 0 0 chrX 8093352 8093453 -168880687 + HY3 scRNA scRNA 1 101 0 1615 164 34 10 chrX 8093760 8094058 -168880082 - AluJo SINE Alu -7 305 1 193 182 23 23 chrX 8094068 8094112 -168880028 + MIR SINE MIR 182 225 -37 270 0 0 0 chrX 8096091 8096121 -168878019 + (TG)n Simple_repeat Simple_repeat 2 31 0 960 220 28 5 chrX 8096193 8096407 -168877733 + MER20 DNA MER1_type 1 219 0 342 0 0 0 chrX 8097448 8097486 -168876654 + (TG)n Simple_repeat Simple_repeat 2 39 0 305 113 38 0 chrX 8097487 8097540 -168876600 - L1MB3 LINE L1 -16 6167 6113 1791 194 22 20 chrX 8097540 8097928 -168876212 - L1MB5 LINE L1 -9 6165 5762 445 299 128 6 chrX 8099793 8099957 -168874183 - L2 LINE L2 -3 3310 3127 1357 209 26 7 chrX 8100972 8101279 -168872861 - L1M4 LINE L1 -2449 3697 3385 875 259 49 0 chrX 8101286 8101491 -168872649 - MER58A DNA MER1_type -5 219 5 427 279 101 6 chrX 8101495 8101674 -168872466 - L1M4 LINE L1 -2756 3390 3195 507 303 155 4 chrX 8101684 8101935 -168872205 + MLT1J2 LTR MaLR 151 439 -11 227 259 17 0 chrX 8102980 8103038 -168871102 + MIR SINE MIR 72 130 -132 1083 202 80 10 chrX 8103502 8103804 -168870336 - MER33 DNA MER1_type 0 324 2 198 0 0 0 chrX 8104150 8104172 -168869968 + (CAGCC)n Simple_repeat Simple_repeat 4 25 0 468 266 70 6 chrX 8104982 8105153 -168868987 + L1ME1 LINE L1 5963 6161 -5 21 36 0 0 chrX 8105542 8105570 -168868570 + AT_rich Low_complexity Low_complexity 1 28 0 249 307 189 16 chrX 8105833 8105960 -168868180 - MIR SINE MIR -72 190 42 189 0 0 0 chrX 8106737 8106758 -168867382 + (CAA)n Simple_repeat Simple_repeat 2 22 0 2190 107 0 0 chrX 8107986 8108284 -168865856 + AluSq SINE Alu 1 298 -15 222 246 0 0 chrX 8109786 8109900 -168864240 + (TGGA)n Simple_repeat Simple_repeat 2 115 0 2414 188 86 57 chrX 8109901 8110729 -168863411 + MLT1B-int LTR MaLR 591 1735 0 580 220 112 25 chrX 8110729 8110915 -168863225 + MLT1B LTR MaLR 1 187 -187 614 217 35 25 chrX 8110954 8111157 -168862983 + MLT1B LTR MaLR 173 383 0 869 221 40 25 chrX 8111352 8111551 -168862589 + MER20 DNA MER1_type 1 202 -17 262 287 10 20 chrX 8111581 8111682 -168862458 + L1ME LINE L1 5679 5778 -343 1755 161 31 3 chrX 8111909 8112200 -168861940 + AluSx SINE Alu 3 301 -11 233 162 88 15 chrX 8112580 8112648 -168861492 + Charlie8 DNA MER1_type 82 154 -2263 645 123 85 0 chrX 8112649 8112755 -168861385 + FLAM_C SINE Alu 1 115 -18 396 241 60 9 chrX 8112783 8112899 -168861241 + Charlie8 DNA MER1_type 144 265 -2152 278 262 83 12 chrX 8113611 8113695 -168860445 - MER5B DNA MER1_type -87 91 2 2130 224 79 88 chrX 8113790 8114592 -168859548 + MER21B LTR ERV1 1 794 -69 206 118 0 0 chrX 8115176 8115210 -168858930 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 2739 39 0 0 chrX 8116431 8116738 -168857402 + AluY SINE Alu 2 308 -3 2420 144 21 88 chrX 8116804 8117127 -168857013 + L1MB5 LINE L1 5264 5530 -644 2605 64 0 0 chrX 8117127 8117438 -168856702 + AluY SINE Alu 1 311 0 2420 144 21 88 chrX 8117438 8117719 -168856421 + L1MB5 LINE L1 5530 5828 -346 1126 156 0 6 chrX 8117719 8117886 -168856254 + AluJb SINE Alu 134 299 -13 485 172 35 35 chrX 8117888 8118004 -168856136 + L1MB5 LINE L1 5821 5936 -242 991 130 6 150 chrX 8118171 8118426 -168855714 + L1MB5 LINE L1 5937 6159 -15 1464 112 10 10 chrX 8118432 8118637 -168855503 - AluSg/x SINE Alu -12 298 94 234 275 100 0 chrX 8118718 8118798 -168855342 + MER5B DNA MER1_type 89 176 -2 2025 127 3 3 chrX 8118849 8119133 -168855007 + AluSx SINE Alu 1 284 -28 187 51 0 51 chrX 8119133 8119172 -168854968 + (TA)n Simple_repeat Simple_repeat 1 37 0 25 0 0 0 chrX 8121589 8121614 -168852526 + AT_rich Low_complexity Low_complexity 1 25 0 2407 83 0 0 chrX 8121669 8121957 -168852183 - AluSx SINE Alu -24 288 1 282 266 228 27 chrX 8122244 8122507 -168851633 + L2 LINE L2 2560 2875 -439 422 167 23 68 chrX 8122870 8123002 -168851138 - MER20 DNA MER1_type -92 127 2 1981 120 60 0 chrX 8123434 8123718 -168850422 - AluJo SINE Alu -11 301 1 1552 183 63 7 chrX 8123963 8124263 -168849877 - MER7A DNA MER2_type 0 346 32 2545 66 0 3 chrX 8124300 8124602 -168849538 + AluSg SINE Alu 1 301 -9 853 194 25 0 chrX 8124622 8124782 -168849358 + MER58A DNA MER1_type 3 166 0 348 157 16 15 chrX 8124806 8124891 -168849249 + MER58B DNA MER1_type 112 326 -15 2004 136 26 16 chrX 8125126 8125435 -168848705 - AluJb SINE Alu 0 312 1 482 327 83 5 chrX 8125529 8125734 -168848406 - MIR SINE MIR -19 243 23 1214 110 5 19 chrX 8125776 8125985 -168848155 - MER6 DNA MER2_type -1 864 659 2217 135 0 0 chrX 8126441 8126745 -168847395 + AluSx SINE Alu 3 306 -6 1075 223 57 16 chrX 8126753 8127067 -168847073 - L1MB7 LINE L1 -10 6174 5848 615 151 155 87 chrX 8127631 8127850 -168846290 + L1MD3 LINE L1 7761 7994 -1 323 287 145 54 chrX 8128113 8128541 -168845599 - MLT1L LTR MaLR -6 609 143 * 850 164 28 23 chrX 8128536 8128713 -168845427 - MER20 DNA MER1_type -10 209 32 308 167 0 0 chrX 8128975 8129023 -168845117 - L2 LINE L2 -5 3308 3261 25 31 0 0 chrX 8129053 8129085 -168845055 + AT_rich Low_complexity Low_complexity 1 32 0 325 156 16 16 chrX 8129126 8129190 -168844950 - L1MD1 LINE L1 -12 6230 6167 992 187 84 0 chrX 8129190 8129377 -168844763 + L1MB7 LINE L1 5924 6133 -51 2323 107 0 10 chrX 8129377 8129686 -168844454 - AluSx SINE Alu -2 310 5 992 187 84 0 chrX 8129686 8129712 -168844428 + L1MB7 LINE L1 6133 6155 -29 228 111 0 0 chrX 8130316 8130352 -168843788 + (CA)n Simple_repeat Simple_repeat 1 36 0 655 229 37 55 chrX 8130693 8130911 -168843229 + MER20 DNA MER1_type 6 219 0 731 127 0 17 chrX 8130929 8131047 -168843093 + FRAM SINE Alu 56 171 -5 228 284 80 23 chrX 8131558 8131646 -168842494 + MIR SINE MIR 162 254 -8 277 122 0 0 chrX 8131723 8131764 -168842376 - MLT1D LTR MaLR -1 504 464 2730 124 62 11 chrX 8131767 8132217 -168841923 - MLT1D LTR MaLR -19 486 14 216 330 70 10 chrX 8132673 8132773 -168841367 + L2 LINE L2 3195 3300 -13 195 42 0 0 chrX 8132773 8132797 -168841343 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2113 100 7 41 chrX 8133350 8133668 -168840472 + AluSx SINE Alu 1 308 0 282 56 0 0 chrX 8134408 8134444 -168839696 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2001 146 0 31 chrX 8135355 8135677 -168838463 - AluJb SINE Alu 0 312 1 2305 104 10 0 chrX 8135789 8136086 -168838054 - AluSx SINE Alu -12 300 1 26 64 0 0 chrX 8138773 8138820 -168835320 + GC_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chrX 8138841 8138862 -168835278 + GC_rich Low_complexity Low_complexity 1 21 0 30 83 0 0 chrX 8139023 8139095 -168835045 + GC_rich Low_complexity Low_complexity 1 72 0 241 216 29 20 chrX 8139141 8139243 -168834897 + (CCG)n Simple_repeat Simple_repeat 2 104 0 41 21 0 0 chrX 8139251 8139299 -168834841 + GC_rich Low_complexity Low_complexity 1 48 0 236 29 0 29 chrX 8139429 8139463 -168834677 + (CCG)n Simple_repeat Simple_repeat 2 34 0 310 278 14 47 chrX 8139644 8139873 -168834267 + C-rich Low_complexity Low_complexity 1 221 0 2418 58 20 3 chrX 8140824 8141118 -168833022 + AluSg SINE Alu 1 299 -11 1121 149 0 6 chrX 8141133 8141308 -168832832 + AluJb SINE Alu 137 310 -2 186 42 0 0 chrX 8142210 8142234 -168831906 - MIR SINE MIR -72 136 113 521 248 103 51 chrX 8142409 8142643 -168831497 + LTR16A1 LTR ERVL 212 457 0 212 284 37 46 chrX 8142658 8142767 -168831373 - MIR SINE MIR -42 220 113 336 24 0 0 chrX 8143102 8143143 -168830997 + (TC)n Simple_repeat Simple_repeat 2 42 0 336 48 0 0 chrX 8143144 8143186 -168830954 + (TG)n Simple_repeat Simple_repeat 1 42 0 957 180 37 32 chrX 8145012 8145229 -168828911 + MER20 DNA MER1_type 1 218 -1 1503 162 13 0 chrX 8145248 8145482 -168828658 - AluJb SINE Alu -14 298 62 189 333 19 56 chrX 8145503 8145611 -168828529 - MIR SINE MIR -111 151 48 261 0 0 0 chrX 8145681 8145710 -168828430 + (TC)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chrX 8145709 8145731 -168828409 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 258 32 0 0 chrX 8145731 8145762 -168828378 + (GA)n Simple_repeat Simple_repeat 1 31 0 1662 206 49 62 chrX 8145770 8146240 -168827900 - MLT2B1 LTR ERVL -56 464 1 1965 174 0 0 chrX 8146282 8146592 -168827548 - AluJb SINE Alu -2 310 1 293 190 17 0 chrX 8146612 8146670 -168827470 + MER5A DNA MER1_type 9 67 -122 702 225 11 78 chrX 8147101 8147292 -168826848 - MER45A DNA AcHobo 0 178 1 1900 210 28 24 chrX 8147521 8147978 -168826162 + MLT1C LTR MaLR 7 465 -2 420 269 17 23 chrX 8148258 8148433 -168825707 + L1MC5 LINE L1 7074 7247 -714 245 68 91 23 chrX 8148439 8148483 -168825657 + MLT1A1 LTR MaLR 319 365 0 2290 74 11 3 chrX 8148517 8148801 -168825339 - AluSq SINE Alu -15 298 13 1041 139 69 56 chrX 8148867 8149083 -168825057 + MER20 DNA MER1_type 1 219 0 183 100 0 0 chrX 8150798 8150828 -168823312 + (TG)n Simple_repeat Simple_repeat 1 30 0 491 226 51 113 chrX 8151043 8151100 -168823040 + MER5A DNA MER1_type 7 66 -123 2595 66 0 0 chrX 8151100 8151401 -168822739 + AluSc SINE Alu 1 301 -8 491 226 51 113 chrX 8151401 8151538 -168822602 + MER5A DNA MER1_type 66 189 0 1717 201 26 0 chrX 8151668 8151971 -168822169 - AluJo SINE Alu -1 311 1 186 133 0 0 chrX 8151979 8152009 -168822131 + (TG)n Simple_repeat Simple_repeat 1 30 0 2153 92 3 14 chrX 8152009 8152292 -168821848 - AluSg1 SINE Alu -25 284 5 192 97 0 0 chrX 8152301 8152332 -168821808 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 2339 64 0 67 chrX 8152350 8152679 -168821461 - AluY SINE Alu -4 307 1 775 164 0 39 chrX 8152687 8152815 -168821325 - FLAM_A SINE Alu -10 123 1 677 223 67 36 chrX 8152964 8153157 -168820983 + L1ME LINE L1 5540 5738 -383 363 324 58 66 chrX 8153345 8153522 -168820618 + L1ME LINE L1 539 716 -5700 2306 86 0 0 chrX 8153522 8153813 -168820327 - AluSx SINE Alu -21 291 1 363 324 58 66 chrX 8153813 8154012 -168820128 + L1ME LINE L1 716 912 -5504 236 252 37 9 chrX 8154136 8154243 -168819897 + L1ME LINE L1 1407 1516 -4910 319 325 71 47 chrX 8154272 8154390 -168819750 + L1ME LINE L1 1735 1862 -4745 2301 115 0 10 chrX 8154390 8154702 -168819438 + AluSx SINE Alu 1 309 -3 319 325 71 47 chrX 8154702 8154795 -168819345 + L1ME LINE L1 1862 1951 -4656 442 316 94 38 chrX 8154809 8155075 -168819065 + L1ME LINE L1 4842 5122 -1304 2480 78 3 3 chrX 8155150 8155457 -168818683 + AluSc SINE Alu 1 307 -2 302 312 46 41 chrX 8155515 8155733 -168818407 + MLT1J2 LTR MaLR 3 221 -229 2295 118 0 0 chrX 8155910 8156216 -168817924 - AluSx SINE Alu -6 306 1 1854 158 0 0 chrX 8156365 8156678 -168817462 - AluJo SINE Alu 0 317 5 1482 194 10 0 chrX 8156728 8157032 -168817108 - L1MA9 LINE L1 -40 6272 5966 374 266 77 44 chrX 8157148 8157422 -168816718 - LTR40b LTR ERVL -1 461 179 258 252 47 28 chrX 8157758 8157865 -168816275 + LTR33 LTR ERVL 337 445 -76 1522 132 11 44 chrX 8157866 8158139 -168816001 + MER2 DNA MER2_type 2 265 -80 445 151 0 14 chrX 8158199 8158272 -168815868 + FLAM_A SINE Alu 42 113 -29 195 42 0 0 chrX 8158277 8158301 -168815839 + (CCA)n Simple_repeat Simple_repeat 3 26 0 281 257 0 0 chrX 8158335 8158405 -168815735 + MER2 DNA MER2_type 271 340 -5 244 271 0 14 chrX 8158409 8158479 -168815661 + LTR33 LTR ERVL 443 511 -10 390 281 72 29 chrX 8158485 8158624 -168815516 + L1ME LINE L1 5539 5683 -767 242 293 64 0 chrX 8158639 8158751 -168815389 + L1ME LINE L1 5757 5877 -747 253 285 86 7 chrX 8158876 8159027 -168815113 + L1ME LINE L1 6003 6165 -279 381 43 0 0 chrX 8159315 8159362 -168814778 + (TA)n Simple_repeat Simple_repeat 1 47 0 2243 86 0 4 chrX 8159370 8159650 -168814490 - AluSc SINE Alu -30 279 1 22 0 0 0 chrX 8159694 8159716 -168814424 + AT_rich Low_complexity Low_complexity 1 22 0 256 318 50 11 chrX 8159770 8159949 -168814191 + L1ME LINE L1 5713 5898 -223 2791 90 16 38 chrX 8159952 8160222 -168813918 + L1MA3 LINE L1 5870 6128 -177 2389 96 0 10 chrX 8160222 8160535 -168813605 + AluSg SINE Alu 1 310 0 2791 90 16 38 chrX 8160535 8160710 -168813430 + L1MA3 LINE L1 6128 6305 0 2622 43 0 7 chrX 8160765 8161064 -168813076 + AluY SINE Alu 1 297 -14 25 0 0 0 chrX 8161423 8161448 -168812692 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chrX 8162031 8162054 -168812086 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 706 162 148 0 chrX 8162084 8162226 -168811914 + Tigger1 DNA MER2_type 789 951 -1467 4186 134 83 11 chrX 8162625 8163372 -168810768 - Tigger1 DNA MER2_type -829 1589 789 2273 103 7 0 chrX 8163414 8163715 -168810425 - AluSx SINE Alu -9 303 1 24 0 0 0 chrX 8163721 8163745 -168810395 + AT_rich Low_complexity Low_complexity 1 24 0 333 191 143 12 chrX 8164135 8164219 -168809921 - L1ME4a LINE L1 -7 6114 6020 2411 96 3 3 chrX 8164456 8164769 -168809371 - AluSp SINE Alu 0 313 1 369 75 0 0 chrX 8164814 8164867 -168809273 + (CA)n Simple_repeat Simple_repeat 1 53 0 2969 136 9 25 chrX 8164867 8165058 -168809082 - Tigger1 DNA MER2_type -9 2409 2217 2069 122 7 10 chrX 8165058 8165354 -168808786 + AluJb SINE Alu 1 295 -17 2969 136 9 25 chrX 8165354 8165691 -168808449 - Tigger1 DNA MER2_type -201 2217 1889 986 100 7 0 chrX 8165828 8165968 -168808172 - Tigger1 DNA MER2_type -484 1934 1794 1282 153 127 19 chrX 8165968 8166236 -168807904 + AluJb SINE Alu 3 299 -13 1787 154 0 13 chrX 8166460 8166758 -168807382 - AluJo SINE Alu -18 294 1 239 273 0 15 chrX 8166907 8166973 -168807167 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 398 306 93 41 chrX 8167157 8167621 -168806519 - L1M4 LINE L1 -1542 4604 4117 1332 97 0 0 chrX 8167622 8167798 -168806342 + AluSg/x SINE Alu 135 310 -2 180 0 0 0 chrX 8168151 8168171 -168805969 + (TA)n Simple_repeat Simple_repeat 1 20 0 1874 177 9 0 chrX 8168172 8168500 -168805640 - L1MB7 LINE L1 -12 6172 5842 3282 164 13 0 chrX 8169323 8169877 -168804263 - L1MC1 LINE L1 -159 6174 5614 416 319 38 23 chrX 8169668 8169931 -168804209 - L1PB3 LINE L1 -329 5825 5559 * 2217 106 0 3 chrX 8170074 8170386 -168803754 + AluSx SINE Alu 1 311 -1 267 342 141 16 chrX 8171490 8171674 -168802466 - L2 LINE L2 -637 2677 2471 525 111 46 19 chrX 8171775 8171883 -168802257 + L1MA5A LINE L1 6021 6131 -166 665 184 22 15 chrX 8171883 8172019 -168802121 + FRAM SINE Alu 32 168 -8 1106 119 0 0 chrX 8172051 8172219 -168801921 + L1MA5A LINE L1 6130 6297 0 2382 73 0 0 chrX 8172251 8172554 -168801586 - AluY SINE Alu -8 303 1 1558 170 7 0 chrX 8172581 8172858 -168801282 + AluJb SINE Alu 1 279 -33 2178 94 74 12 chrX 8172858 8173197 -168800943 - LTR4 LTR ERV1 0 596 237 1326 122 173 0 chrX 8173518 8173755 -168800385 + AluJb SINE Alu 21 298 -14 363 228 87 11 chrX 8174085 8174177 -168799963 + MER5A DNA MER1_type 2 100 -89 2617 142 9 34 chrX 8174199 8174636 -168799504 + MSTB LTR MaLR 1 426 0 322 130 0 0 chrX 8175181 8175227 -168798913 + Alu SINE Alu 1 46 -254 1950 107 50 7 chrX 8175285 8175584 -168798556 - AluSx SINE Alu 0 312 1 504 277 0 0 chrX 8176089 8176226 -168797914 + L1ME LINE L1 5603 5739 -427 323 293 13 51 chrX 8176311 8176468 -168797672 + L1MC4a LINE L1 4509 4659 -1487 2414 154 75 97 chrX 8176554 8177113 -168797027 + MLT2B3 LTR ERVL 1 547 -7 2091 115 7 0 chrX 8177244 8177539 -168796601 + AluSx SINE Alu 10 306 -6 461 304 91 70 chrX 8177542 8177652 -168796488 + L1MC4a LINE L1 4967 5073 -1073 2113 139 14 17 chrX 8177652 8177923 -168796217 + MER2 DNA MER2_type 1 272 -72 1955 144 0 3 chrX 8177923 8178215 -168795925 - AluSx SINE Alu -17 295 5 2113 139 14 17 chrX 8178215 8178288 -168795852 + MER2 DNA MER2_type 272 344 0 461 304 91 70 chrX 8178288 8178549 -168795591 + L1MC4a LINE L1 5073 5346 -800 395 311 26 32 chrX 8178549 8178720 -168795420 + MLT1F1 LTR MaLR 1 166 -376 1119 183 17 38 chrX 8178720 8178960 -168795180 + AluJo SINE Alu 1 235 -77 1084 237 94 51 chrX 8178998 8179369 -168794771 + MLT1F1 LTR MaLR 179 565 -2 1626 221 102 63 chrX 8179392 8179440 -168794700 + L1MC4a LINE L1 5371 5416 -2392 840 155 16 0 chrX 8179440 8179569 -168794571 + FLAM_C SINE Alu 1 131 -2 1626 221 102 63 chrX 8179569 8180167 -168793973 + L1MC4a LINE L1 5416 6042 -1766 1935 123 7 26 chrX 8180418 8180720 -168793420 + AluSx SINE Alu 1 296 -16 525 274 82 29 chrX 8180722 8180930 -168793210 + L1MC4 LINE L1 6699 6917 -1125 930 128 64 0 chrX 8180933 8181105 -168793035 + L1MB7 LINE L1 6001 6183 -1 918 89 0 0 chrX 8181501 8181624 -168792516 + AluY SINE Alu 173 295 -16 2405 93 0 0 chrX 8181685 8181996 -168792144 + AluSx SINE Alu 1 311 -1 362 238 80 23 chrX 8182363 8182546 -168791594 + L1MC4 LINE L1 6829 7074 -796 720 165 0 9 chrX 8182583 8182698 -168791442 + FLAM_C SINE Alu 2 115 -28 21 36 0 0 chrX 8182710 8182738 -168791402 + AT_rich Low_complexity Low_complexity 1 28 0 394 256 27 94 chrX 8182749 8182807 -168791333 + L1MC5 LINE L1 7645 7705 -256 1933 87 79 4 chrX 8182807 8183084 -168791056 + AluSc SINE Alu 1 298 -11 394 256 27 94 chrX 8183084 8183248 -168790892 + L1MC5 LINE L1 7705 7852 -109 1495 153 19 0 chrX 8183321 8183582 -168790558 + AluJb SINE Alu 44 309 -3 257 235 0 106 chrX 8183650 8183735 -168790405 + L1MC5 LINE L1 7034 7109 -852 677 110 80 0 chrX 8183737 8183837 -168790303 - FLAM_A SINE Alu -15 127 20 1220 170 4 42 chrX 8183906 8184147 -168789993 + AluJo SINE Alu 37 268 -44 857 180 0 6 chrX 8184178 8184356 -168789784 + GA-rich Low_complexity Low_complexity 4 180 0 693 213 4 12 chrX 8184379 8184643 -168789497 + GA-rich Low_complexity Low_complexity 1 261 0 305 223 31 52 chrX 8184643 8184754 -168789386 + L1MC4 LINE L1 7063 7251 -637 244 223 96 71 chrX 8184797 8184937 -168789203 + L1MD3 LINE L1 7260 7587 -408 1622 183 10 3 chrX 8184996 8185297 -168788843 + AluJb SINE Alu 1 303 -9 2084 125 0 0 chrX 8185587 8185884 -168788256 + AluSx SINE Alu 1 297 -15 331 210 12 25 chrX 8185955 8186036 -168788104 + L1MC5 LINE L1 7836 7915 -46 1698 162 0 23 chrX 8186086 8186395 -168787745 - AluJo SINE Alu -10 302 1 588 309 24 24 chrX 8187523 8187814 -168786326 + L1ME LINE L1 5508 5798 -323 1971 229 24 2 chrX 8187834 8188293 -168785847 - L1MB7 LINE L1 -258 5926 5458 407 274 190 34 chrX 8188478 8188741 -168785399 - L1ME3A LINE L1 -15 6155 5852 448 167 0 0 chrX 8188854 8188926 -168785214 + FLAM SINE Alu 53 124 -19 2007 120 0 0 chrX 8189310 8189601 -168784539 + AluSx SINE Alu 1 291 -21 351 291 51 48 chrX 8189605 8189921 -168784219 + L1ME4a LINE L1 5588 5904 -217 531 173 4 12 chrX 8189965 8190212 -168783928 + (TG)n Simple_repeat Simple_repeat 1 245 0 827 96 20 14 chrX 8190413 8190559 -168783581 + (GGAA)n Simple_repeat Simple_repeat 1 147 0 1589 146 18 21 chrX 8190748 8191029 -168783111 - AluJo SINE Alu -30 282 3 309 259 190 0 chrX 8191029 8191145 -168782995 + Charlie4 DNA MER1_type 1812 1949 -12 293 215 0 31 chrX 8191147 8191212 -168782928 + LTR49 LTR ERV1 30 92 -503 707 199 7 7 chrX 8191212 8191348 -168782792 + LTR47A LTR ERVL 1 136 -316 1911 93 21 21 chrX 8191355 8191645 -168782495 - AluSx SINE Alu -22 290 1 2110 153 8 6 chrX 8191646 8192006 -168782134 + L1MB2 LINE L1 5467 5827 -344 1805 124 41 21 chrX 8192011 8192301 -168781839 + AluJo SINE Alu 3 298 -14 2062 108 3 20 chrX 8192303 8192609 -168781531 + AluSx SINE Alu 2 302 -10 2815 153 35 28 chrX 8192609 8193177 -168780963 + L1MB3 LINE L1 5611 6182 -1 2147 91 7 10 chrX 8193671 8193968 -168780172 - AluSq SINE Alu -17 296 1 1647 168 7 14 chrX 8194096 8194387 -168779753 - AluJo SINE Alu -18 294 6 508 203 0 14 chrX 8194965 8195103 -168779037 + GA-rich Low_complexity Low_complexity 4 139 0 1972 191 34 29 chrX 8195108 8195554 -168778586 + MLT1D LTR MaLR 58 505 0 1806 56 9 4 chrX 8195576 8195809 -168778331 - AluSq SINE Alu -10 303 70 447 263 105 12 chrX 8195920 8196091 -168778049 + HAL1 LINE L1 25 211 -2296 1708 138 3 49 chrX 8196419 8196744 -168777396 - AluJo SINE Alu 0 312 3 372 276 75 68 chrX 8196746 8196942 -168777198 - L1MDa LINE L1 -4026 2514 2321 243 0 0 0 chrX 8196942 8196969 -168777171 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1663 149 4 7 chrX 8196969 8197250 -168776890 - AluJo SINE Alu -32 280 1 372 276 75 68 chrX 8197250 8197360 -168776780 - L1MDa LINE L1 -4218 2322 2205 2102 73 52 0 chrX 8197439 8197725 -168776415 + AluSq SINE Alu 1 301 -12 1665 152 65 37 chrX 8197765 8198120 -168776020 + MLT1A1 LTR MaLR 1 365 0 2257 93 0 13 chrX 8198383 8198731 -168775409 + AluSg SINE Alu 1 310 0 1589 157 50 7 chrX 8199241 8199522 -168774618 + AluJo SINE Alu 1 293 -19 240 35 0 0 chrX 8199523 8199552 -168774588 + (CA)n Simple_repeat Simple_repeat 2 30 0 2426 97 129 5 chrX 8200325 8200706 -168773434 + MSTA LTR MaLR 1 428 0 9639 166 25 1 chrX 8200724 8202323 -168771817 + MSTA-int LTR MaLR 15 1651 0 2135 134 153 5 chrX 8202323 8202696 -168771444 + MSTA LTR MaLR 1 428 0 321 298 14 91 chrX 8202898 8203106 -168771034 - L1MC5 LINE L1 -44 7917 7726 1158 256 73 25 chrX 8203153 8203551 -168770589 - L1ME2 LINE L1 -31 6133 5717 2263 112 0 0 chrX 8203645 8203957 -168770183 + AluSx SINE Alu 1 312 0 1524 151 7 11 chrX 8204027 8204299 -168769841 + AluJo SINE Alu 3 273 -39 404 260 181 15 chrX 8204517 8204721 -168769419 - MIR SINE MIR -15 247 10 487 255 34 13 chrX 8204777 8204926 -168769214 + MLT1H LTR MaLR 25 176 -373 993 217 5 0 chrX 8206513 8206711 -168767429 - L1ME2 LINE L1 -747 5399 5201 1866 136 0 13 chrX 8209356 8209683 -168764457 + AluSx SINE Alu 1 312 0 1948 92 96 0 chrX 8210586 8210867 -168763273 - AluSx SINE Alu -4 308 1 876 240 5 0 chrX 8211040 8211232 -168762908 - L1MB3 LINE L1 -7 6176 5984 687 188 0 0 chrX 8211247 8211364 -168762776 - FAM SINE Alu -11 174 58 1322 149 5 0 chrX 8211511 8211747 -168762393 - AluJb SINE Alu 0 312 76 3402 157 52 96 chrX 8211747 8212541 -168761599 + MER21A LTR ERV1 154 912 -19 2546 39 0 3 chrX 8212770 8213077 -168761063 - AluY SINE Alu -5 306 1 2008 103 25 0 chrX 8214689 8214970 -168759170 + AluSx SINE Alu 3 290 -22 773 168 0 0 chrX 8215007 8215138 -168759002 + AluJb SINE Alu 182 312 0 1912 164 0 13 chrX 8216192 8216497 -168757643 - AluJo SINE Alu -11 301 1 23 0 0 0 chrX 8216497 8216520 -168757620 + AT_rich Low_complexity Low_complexity 1 23 0 545 215 161 16 chrX 8216600 8216786 -168757354 - MER20 DNA MER1_type -6 213 1 2198 109 0 45 chrX 8218355 8218666 -168755474 + AluSx SINE Alu 1 297 -15 681 173 0 0 chrX 8219288 8219398 -168754742 + FLAM_C SINE Alu 2 111 -32 293 0 0 26 chrX 8219418 8219456 -168754684 + (TAA)n Simple_repeat Simple_repeat 3 39 0 1831 108 68 0 chrX 8219694 8219943 -168754197 + AluSx SINE Alu 1 266 -46 309 239 0 0 chrX 8220193 8220260 -168753880 + MLT1A1 LTR MaLR 299 365 0 326 282 0 0 chrX 8220471 8220556 -168753584 + MER3 DNA MER1_type 1 85 -124 579 218 36 62 chrX 8220655 8220880 -168753260 - MER20 DNA MER1_type 0 219 1 1701 164 7 20 chrX 8220986 8221278 -168752862 - AluJb SINE Alu -24 288 1 200 119 0 24 chrX 8222829 8222871 -168751269 + (CA)n Simple_repeat Simple_repeat 2 42 0 1650 166 22 4 chrX 8223129 8223400 -168750740 - AluJo SINE Alu -36 276 1 874 93 0 0 chrX 8223400 8223507 -168750633 - AluSq/x SINE Alu -178 135 29 2384 91 0 0 chrX 8223724 8224034 -168750106 + AluSx SINE Alu 1 310 0 2019 136 33 0 chrX 8224230 8224532 -168749608 - AluJb SINE Alu 0 312 1 2645 74 8 0 chrX 8224674 8225025 -168749115 - THE1A LTR MaLR -1 354 1 424 301 23 11 chrX 8225753 8225929 -168748211 + (TG)n Simple_repeat Simple_repeat 2 179 0 291 217 40 0 chrX 8225983 8226135 -168748005 + (TG)n Simple_repeat Simple_repeat 1 158 0 256 293 30 0 chrX 8226146 8226245 -168747895 + (TG)n Simple_repeat Simple_repeat 1 102 0 2030 128 3 29 chrX 8227380 8227692 -168746448 - AluJb SINE Alu 0 312 9 3020 169 11 4 chrX 8227822 8228344 -168745796 - Tigger4(Zombi) DNA MER2_type 0 2731 2206 751 217 0 0 chrX 8228338 8228476 -168745664 - Tigger4(Zombi) DNA MER2_type -2593 138 1 * 1682 160 53 53 chrX 8229811 8230111 -168744029 + AluJo SINE Alu 1 300 -12 1852 169 7 0 chrX 8230113 8230409 -168743731 + AluJo SINE Alu 3 300 -12 358 261 0 0 chrX 8231787 8231875 -168742265 + MER58A DNA MER1_type 1 88 -19 228 243 108 0 chrX 8231875 8231949 -168742191 + L1MCc LINE L1 122 203 -6220 482 288 75 29 chrX 8232087 8232365 -168741775 + L1ME2 LINE L1 5741 6031 -133 1563 214 0 16 chrX 8232408 8232717 -168741423 + AluJo SINE Alu 1 304 -8 297 255 149 11 chrX 8232723 8232817 -168741323 + MLT1F1 LTR MaLR 24 130 -437 470 279 20 60 chrX 8232834 8233085 -168741055 + L1PA14 LINE L1 5683 5923 -238 * 2517 203 52 29 chrX 8232885 8233482 -168740658 + L1MA10 LINE L1 5722 6332 -2 1780 188 114 10 chrX 8233484 8233889 -168740251 + MLT1F1 LTR MaLR 121 567 0 2432 95 0 0 chrX 8235137 8235442 -168738698 + AluSc SINE Alu 1 305 -4 249 300 38 0 chrX 8235612 8235692 -168738448 + L2 LINE L2 3185 3267 -5 200 200 18 0 chrX 8235693 8235748 -168738392 + GA-rich Low_complexity Low_complexity 4 59 0 1145 192 64 91 chrX 8235820 8235988 -168738152 + MLT1A1 LTR MaLR 1 172 -193 1797 144 3 34 chrX 8235988 8236280 -168737860 + AluJo SINE Alu 12 294 -18 1145 192 64 91 chrX 8236280 8236486 -168737654 + MLT1A1 LTR MaLR 172 365 0 2273 94 0 14 chrX 8236944 8237264 -168736876 + AluSg SINE Alu 1 316 0 532 321 108 39 chrX 8237964 8238397 -168735743 + L1ME4a LINE L1 5289 5751 -370 362 274 191 15 chrX 8238446 8238650 -168735490 + L1ME4a LINE L1 5864 6103 -18 25 0 0 0 chrX 8239613 8239638 -168734502 + AT_rich Low_complexity Low_complexity 1 25 0 231 329 24 0 chrX 8239638 8239720 -168734420 - MIR3 SINE MIR -41 167 84 206 220 20 0 chrX 8240678 8240728 -168733412 + G-rich Low_complexity Low_complexity 3 53 0 477 0 0 0 chrX 8242515 8242568 -168731572 + (TG)n Simple_repeat Simple_repeat 2 54 0 405 0 0 0 chrX 8242614 8242659 -168731481 + (TG)n Simple_repeat Simple_repeat 2 46 0 1011 178 6 0 chrX 8242659 8242822 -168731318 - AluJo SINE Alu -27 285 122 184 362 101 11 chrX 8243426 8243614 -168730526 - MIR SINE MIR -38 224 20 916 102 0 16 chrX 8243783 8243911 -168730229 + FLAM_C SINE Alu 1 126 -17 2427 88 0 0 chrX 8243938 8244232 -168729908 - AluSx SINE Alu -18 294 1 801 136 0 0 chrX 8244233 8244343 -168729797 - AluJo/FLAM SINE Alu -202 110 1 2241 213 43 22 chrX 8244347 8244633 -168729507 - L1MC3 LINE L1 -16 7769 7491 1972 186 8 14 chrX 8244633 8244999 -168729141 + MLT1A1 LTR MaLR 2 365 0 2241 213 43 22 chrX 8244999 8245267 -168728873 - L1MC3 LINE L1 -294 7491 7203 234 219 25 101 chrX 8245273 8245392 -168728748 - MLT1F1 LTR MaLR -433 134 25 1507 168 76 52 chrX 8245395 8245764 -168728376 - L1MC3 LINE L1 -707 7078 6701 1834 130 52 0 chrX 8245775 8246092 -168728048 - AluJo SINE Alu 0 331 1 929 242 9 22 chrX 8246816 8247039 -168727101 - MER58A DNA MER1_type -4 220 1 418 289 35 0 chrX 8247807 8247921 -168726219 + MER58A DNA MER1_type 107 224 0 2395 72 30 7 chrX 8247949 8248254 -168725886 - AluSq SINE Alu -1 312 1 1217 174 54 8 chrX 8248322 8248581 -168725559 - L1MB7 LINE L1 -19 6165 5895 1484 158 60 34 chrX 8249617 8249882 -168724258 + AluJb SINE Alu 6 277 -35 868 170 0 0 chrX 8250394 8250529 -168723611 - AluJo SINE Alu -177 135 1 2061 148 3 6 chrX 8250922 8251233 -168722907 + AluJb SINE Alu 1 310 -2 320 389 56 5 chrX 8252124 8252322 -168721818 + L1 LINE L1 3622 3829 -2317 522 249 0 0 chrX 8252357 8252530 -168721610 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 203 298 0 0 chrX 8252531 8252578 -168721562 + (CCCA)n Simple_repeat Simple_repeat 1 47 0 755 178 0 6 chrX 8252580 8252760 -168721380 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 221 255 0 0 chrX 8252800 8252847 -168721293 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 268 331 81 0 chrX 8252848 8252972 -168721168 - L2 LINE L2 -1 3271 3138 1940 177 21 23 chrX 8253409 8253793 -168720347 + MLT1B LTR MaLR 1 383 -7 1975 125 0 58 chrX 8255492 8255804 -168718336 - AluJb SINE Alu -17 295 2 859 233 159 4 chrX 8257066 8257324 -168716816 - AluJo SINE Alu 0 302 5 2404 86 7 7 chrX 8260793 8261097 -168713043 - AluSx SINE Alu -8 304 1 942 213 63 29 chrX 8261099 8261338 -168712802 + MER58B DNA MER1_type 74 320 -21 1661 154 0 84 chrX 8261338 8261671 -168712469 + AluJb SINE Alu 1 307 0 1915 153 29 13 chrX 8262482 8262789 -168711351 - AluJo SINE Alu 0 312 1 442 232 6 11 chrX 8262867 8263048 -168711092 + (CA)n Simple_repeat Simple_repeat 1 180 0 213 219 0 0 chrX 8263061 8263134 -168711006 + (CA)n Simple_repeat Simple_repeat 2 74 0 2320 124 0 0 chrX 8264375 8264682 -168709458 - AluSx SINE Alu -5 307 1 1805 176 0 0 chrX 8266023 8266313 -168707827 + AluJo SINE Alu 1 290 -22 623 235 19 25 chrX 8266729 8266891 -168707249 - MER3 DNA MER1_type -26 183 23 956 141 7 0 chrX 8267267 8267402 -168706738 - AluJo SINE Alu -176 136 1 2042 155 52 8 chrX 8267916 8268316 -168705824 + L1MB2 LINE L1 5748 6165 -6 1972 138 17 3 chrX 8268798 8269094 -168705046 - AluJo SINE Alu -12 300 1 25 0 0 0 chrX 8269683 8269708 -168704432 + AT_rich Low_complexity Low_complexity 1 25 0 945 135 0 0 chrX 8269713 8269839 -168704301 - FLAM_C SINE Alu -17 126 1 22 0 0 0 chrX 8270070 8270092 -168704048 + AT_rich Low_complexity Low_complexity 1 22 0 672 167 0 0 chrX 8270162 8270264 -168703876 + FRAM SINE Alu 62 163 -13 291 54 0 0 chrX 8270377 8270414 -168703726 + (A)n Simple_repeat Simple_repeat 1 37 0 318 259 95 43 chrX 8271182 8271298 -168702842 + MER5A DNA MER1_type 1 122 -67 2038 111 21 0 chrX 8275206 8275523 -168698617 + AluSx SINE Alu 1 323 0 1048 168 0 0 chrX 8275530 8275685 -168698455 + FAM SINE Alu 1 155 -30 204 200 0 0 chrX 8275687 8275732 -168698408 + CT-rich Low_complexity Low_complexity 4 48 0 21 36 0 0 chrX 8275738 8275766 -168698374 + AT_rich Low_complexity Low_complexity 1 28 0 868 163 88 0 chrX 8277812 8277959 -168696181 + FRAM SINE Alu 1 160 -6 333 211 40 47 chrX 8278202 8278342 -168695798 + L1MB8 LINE L1 5920 6061 -122 408 111 136 0 chrX 8278432 8278513 -168695627 + MER21A LTR ERV1 839 930 -1 198 271 153 76 chrX 8278686 8278830 -168695310 - L3 LINE CR1 -260 1317 1163 433 261 213 37 chrX 8278866 8279134 -168695006 + L1MB3 LINE L1 5330 5644 -2164 2055 146 0 31 chrX 8279656 8279978 -168694162 - AluJb SINE Alu 0 312 1 687 111 10 0 chrX 8280065 8280164 -168693976 + HY3 scRNA scRNA 1 100 -1 1862 187 63 0 chrX 8281477 8281873 -168692267 - L1MB7 LINE L1 -9 6175 5755 782 192 85 6 chrX 8281878 8282055 -168692085 - L1MB7 LINE L1 -524 5656 5466 2379 88 3 7 chrX 8282178 8282484 -168691656 - AluSg SINE Alu -5 305 1 482 236 192 33 chrX 8282574 8282756 -168691384 + MER58A DNA MER1_type 9 219 -5 1610 181 0 28 chrX 8284535 8284817 -168689323 - AluJb SINE Alu -24 288 15 2438 149 15 22 chrX 8285019 8285475 -168688665 + L1MB3 LINE L1 5728 6180 -3 2271 116 0 19 chrX 8285506 8285824 -168688316 + AluSx SINE Alu 1 312 0 1519 158 3 110 chrX 8285887 8286223 -168687917 + AluJb SINE Alu 1 300 -12 2302 117 0 0 chrX 8286223 8286560 -168687580 + AluSg SINE Alu 1 337 0 216 0 0 0 chrX 8288658 8288682 -168685458 + (A)n Simple_repeat Simple_repeat 1 24 0 2517 79 0 0 chrX 8288907 8289212 -168684928 + AluY SINE Alu 1 305 -6 1849 124 0 72 chrX 8289738 8289906 -168684234 - AluJo SINE Alu -14 298 120 242 0 61 0 chrX 8289906 8289939 -168684201 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2624 3 0 24 chrX 8289939 8290230 -168683910 - AluYa5 SINE Alu -27 284 1 1849 124 0 72 chrX 8290230 8290367 -168683773 - AluJo SINE Alu -190 122 14 744 182 23 8 chrX 8291007 8291139 -168683001 + FAM SINE Alu 32 165 -20 376 322 28 0 chrX 8291937 8292117 -168682023 + LTR41 LTR ERVL 3 187 -586 498 176 54 152 chrX 8292355 8292559 -168681581 + LTR41 LTR ERVL 503 686 -87 393 259 43 0 chrX 8292611 8292727 -168681413 - MER58B DNA MER1_type -1 340 220 236 204 0 0 chrX 8292781 8292825 -168681315 + LTR41 LTR ERVL 720 763 -10 1573 208 0 10 chrX 8293298 8293591 -168680549 + AluJo SINE Alu 2 291 -21 1592 213 74 12 chrX 8293598 8294002 -168680138 - L1MB2 LINE L1 -16 6155 5727 2339 107 0 0 chrX 8294043 8294334 -168679806 + AluSx SINE Alu 1 291 -21 278 271 25 42 chrX 8294373 8294491 -168679649 + L1ME LINE L1 5659 5774 -396 1145 174 19 19 chrX 8294509 8294722 -168679418 - MER20 DNA MER1_type -4 215 3 2217 100 0 4 chrX 8295555 8295835 -168678305 - AluSx SINE Alu -33 279 1 2377 89 0 10 chrX 8295945 8296247 -168677893 - AluSq SINE Alu -14 299 1 1979 132 0 35 chrX 8297082 8297400 -168676740 + AluJb SINE Alu 5 311 -1 22 0 0 0 chrX 8298718 8298740 -168675400 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chrX 8299195 8299220 -168674920 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 1602 54 19 0 chrX 8299460 8299665 -168674475 - L1PA7 LINE L1 0 6154 5946 282 269 37 9 chrX 8300848 8300956 -168673184 + L1ME3A LINE L1 6046 6156 -14 1560 197 87 32 chrX 8300973 8301409 -168672731 + MLT1C LTR MaLR 1 460 -7 267 303 101 0 chrX 8301932 8302021 -168672119 + MIR3 SINE MIR 96 193 -15 287 203 16 0 chrX 8302138 8302202 -168671938 + L1MD1 LINE L1 6032 6096 -146 357 115 0 33 chrX 8302202 8302263 -168671877 + AluJ/FLAM SINE Alu 17 75 -227 684 188 106 69 chrX 8302934 8303017 -168671123 + L1MD1 LINE L1 6003 6081 -161 1819 135 3 53 chrX 8303017 8303320 -168670820 + AluJb SINE Alu 17 304 -8 684 188 106 69 chrX 8303320 8303454 -168670686 + L1MD1 LINE L1 6081 6228 -14 1754 186 0 0 chrX 8303458 8303748 -168670392 + AluJo SINE Alu 1 290 -22 1974 142 26 3 chrX 8303908 8304210 -168669930 - AluJb SINE Alu -3 309 1 237 319 75 43 chrX 8306063 8306157 -168667983 - MIR SINE MIR -90 118 22 2992 9 0 0 chrX 8306235 8306553 -168667587 - AluYb8 SINE Alu 0 318 1 1543 153 0 12 chrX 8308108 8308181 -168665959 + AluJo SINE Alu 63 135 -177 2314 104 0 3 chrX 8308181 8308489 -168665651 + AluY SINE Alu 1 307 -4 1543 153 0 12 chrX 8308489 8308664 -168665476 + AluJo SINE Alu 135 308 -4 885 237 17 58 chrX 8308672 8308967 -168665173 + L1ME3A LINE L1 5805 6087 -83 730 262 52 0 chrX 8309568 8309778 -168664362 + MER58A DNA MER1_type 2 222 -2 23 0 0 44 chrX 8309923 8309945 -168664195 + AT_rich Low_complexity Low_complexity 1 22 -21 2318 103 0 7 chrX 8309945 8310246 -168663894 - AluSq SINE Alu -14 299 1 1936 155 7 7 chrX 8310250 8310547 -168663593 - AluJb SINE Alu -15 297 1 23 0 0 44 chrX 8310547 8310564 -168663576 + AT_rich Low_complexity Low_complexity 25 43 0 1802 146 31 121 chrX 8310863 8311076 -168663064 + L1MC3 LINE L1 7310 7541 -454 1998 133 0 17 chrX 8311076 8311378 -168662762 + AluSx SINE Alu 1 297 -15 1802 146 31 121 chrX 8311378 8311679 -168662461 + L1MC3 LINE L1 7541 7995 0 257 204 0 0 chrX 8312420 8312464 -168661676 + AluJ/monomer SINE Alu 1 44 -259 25 0 0 0 chrX 8312469 8312494 -168661646 + AT_rich Low_complexity Low_complexity 1 25 0 1832 132 10 65 chrX 8312707 8313017 -168661123 - AluJo SINE Alu -19 293 1 2170 135 0 3 chrX 8313521 8313832 -168660308 + AluSq SINE Alu 1 310 -3 344 247 52 91 chrX 8313901 8314055 -168660085 - HAL1b LINE L1 -1 1347 1200 1706 153 62 7 chrX 8314208 8314496 -168659644 + AluJb SINE Alu 1 304 -8 568 301 25 20 chrX 8315038 8315295 -168658845 + L1ME1 LINE L1 5781 6001 -165 525 203 108 0 chrX 8315785 8315933 -168658207 - L1MB8 LINE L1 -115 6063 5900 2652 53 0 0 chrX 8316417 8316718 -168657422 + AluY SINE Alu 1 301 -10 1312 267 23 32 chrX 8317648 8318049 -168656091 + L1MB7 LINE L1 5747 6145 -39 800 181 0 0 chrX 8318049 8318182 -168655958 + AluJo SINE Alu 1 133 -169 1312 267 23 32 chrX 8318182 8318211 -168655929 + L1MB7 LINE L1 6145 6173 -11 246 154 31 15 chrX 8318227 8318292 -168655848 + GA-rich Low_complexity Low_complexity 1 66 0 182 341 35 0 chrX 8318489 8318574 -168655566 - MIR SINE MIR -116 146 59 807 145 105 23 chrX 8318877 8319049 -168655091 + AluJo SINE Alu 121 306 -6 304 303 81 10 chrX 8319977 8320076 -168654064 + AluJb SINE Alu 176 281 -21 201 39 0 0 chrX 8320124 8320150 -168653990 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 812 193 56 0 chrX 8320616 8320777 -168653363 - MER20 DNA MER1_type -48 171 2 362 269 59 25 chrX 8320963 8321082 -168653058 + MLT1K LTR MaLR 460 582 -6 414 0 0 0 chrX 8321127 8321173 -168652967 + (CA)n Simple_repeat Simple_repeat 1 46 0 640 194 148 46 chrX 8322773 8322794 -168651346 + MER20 DNA MER1_type 1 18 -201 1972 128 54 20 chrX 8322794 8323097 -168651043 + MLT1A1 LTR MaLR 1 319 -46 2507 74 3 0 chrX 8323097 8323396 -168650744 - AluSp SINE Alu -4 309 10 1972 128 54 20 chrX 8323396 8323445 -168650695 + MLT1A1 LTR MaLR 319 365 0 640 194 148 46 chrX 8323445 8323619 -168650521 + MER20 DNA MER1_type 18 216 -3 2423 62 0 10 chrX 8323900 8324191 -168649949 + AluSp SINE Alu 24 311 -2 307 221 0 0 chrX 8324465 8324533 -168649607 + L1MB3 LINE L1 5938 6005 -178 254 111 0 0 chrX 8324550 8324586 -168649554 + Alu SINE Alu 2 37 -266 530 213 16 8 chrX 8324593 8324715 -168649425 - MLT1A2 LTR MaLR -52 322 200 266 0 29 0 chrX 8324808 8324842 -168649298 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 2318 123 0 0 chrX 8325465 8325775 -168648365 + AluSx SINE Alu 3 312 0 1517 171 59 39 chrX 8326023 8326328 -168647812 + AluJo SINE Alu 1 311 -1 1822 155 52 14 chrX 8326437 8326786 -168647354 + THE1C LTR MaLR 1 362 -13 379 260 0 0 chrX 8326801 8326897 -168647243 - MER5A DNA MER1_type -93 96 1 1157 146 6 6 chrX 8327398 8327576 -168646564 + AluJb SINE Alu 135 312 0 261 306 89 6 chrX 8327612 8327769 -168646371 - MER5B DNA MER1_type -8 170 1 1905 165 0 13 chrX 8327989 8328305 -168645835 - AluJb SINE Alu 0 312 1 2212 111 0 16 chrX 8330328 8330643 -168643497 - AluSq SINE Alu -3 310 1 2078 135 20 0 chrX 8330750 8331046 -168643094 + AluJb SINE Alu 9 310 -2 2065 124 7 10 chrX 8381772 8382078 -168592062 + AluSx SINE Alu 1 305 -7 1958 253 68 39 chrX 8382138 8383023 -168591117 + L1MEc LINE L1 1345 2262 -4134 1083 144 20 10 chrX 8383023 8383218 -168590922 + L1PA13 LINE L1 5967 6163 0 1958 253 68 39 chrX 8383218 8383323 -168590817 + L1MEc LINE L1 2262 2363 -4033 214 147 59 15 chrX 8383339 8383407 -168590733 + (TA)n Simple_repeat Simple_repeat 1 71 0 225 273 0 0 chrX 8383424 8383468 -168590672 - MER2 DNA MER2_type 0 345 302 1655 122 0 0 chrX 8383479 8383709 -168590431 + AluJb SINE Alu 1 230 -82 28 61 0 0 chrX 8383739 8383788 -168590352 + AT_rich Low_complexity Low_complexity 1 49 0 1253 144 25 0 chrX 8383788 8383989 -168590151 - MER2 DNA MER2_type -139 206 1 532 182 153 86 chrX 8384954 8385163 -168588977 - MER58A DNA MER1_type 0 224 2 2404 103 0 3 chrX 8385508 8385820 -168588320 + AluSx SINE Alu 2 312 0 1030 188 28 5 chrX 8385951 8386164 -168587976 + MER20 DNA MER1_type 1 218 -1 206 346 63 31 chrX 8386472 8386599 -168587541 - MIR SINE MIR -113 149 19 2036 71 0 23 chrX 8388432 8388698 -168585442 - AluSg SINE Alu -50 260 1 180 0 0 0 chrX 8389852 8389872 -168584268 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 2052 132 0 0 chrX 8390649 8390950 -168583190 - AluJb SINE Alu 0 301 1 650 290 65 0 chrX 8391011 8391225 -168582915 - MER58 DNA MER1_type -113 228 1 2346 173 121 22 chrX 8391291 8391556 -168582584 + L1MB3 LINE L1 5570 5807 -376 2180 124 0 7 chrX 8391556 8391679 -168582461 + AluSx SINE Alu 4 126 -186 271 44 44 0 chrX 8391679 8391724 -168582416 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 2180 124 0 7 chrX 8391724 8391899 -168582241 + AluSx SINE Alu 126 300 -12 2346 173 121 22 chrX 8391899 8392189 -168581951 + L1MB3 LINE L1 5807 6180 -3 237 292 164 33 chrX 8393633 8393962 -168580178 + L2 LINE L2 2851 3222 -91 2426 71 7 10 chrX 8395653 8395961 -168578179 - AluSx SINE Alu -5 307 1 757 181 46 69 chrX 8396251 8396467 -168577673 + MER20 DNA MER1_type 1 211 -8 217 236 194 14 chrX 8398312 8398384 -168575756 + L2 LINE L2 3218 3302 -11 280 275 42 28 chrX 8399559 8399701 -168574439 + MIR SINE MIR 41 184 -78 1812 174 24 0 chrX 8399775 8400069 -168574071 - AluJo SINE Alu -11 301 1 954 201 113 25 chrX 8400291 8400340 -168573800 - Charlie5 DNA MER1_type -9 2615 2572 2536 77 0 0 chrX 8400340 8400651 -168573489 - AluSx SINE Alu -1 311 1 954 201 113 25 chrX 8400651 8400920 -168573220 - Charlie5 DNA MER1_type -52 2572 2269 25 0 0 0 chrX 8400942 8400967 -168573173 + AT_rich Low_complexity Low_complexity 1 25 0 797 108 0 0 chrX 8401512 8401623 -168572517 - L1MA1 LINE L1 -4 6298 6188 571 191 0 37 chrX 8401686 8401822 -168572318 + Charlie5 DNA MER1_type 2391 2521 -91 364 228 51 57 chrX 8401828 8401986 -168572154 + Charlie5 DNA MER1_type 2466 2622 0 276 232 0 14 chrX 8404481 8404550 -168569590 + L1M LINE L1 5354 5421 -700 198 0 0 0 chrX 8404921 8404943 -168569197 + (CA)n Simple_repeat Simple_repeat 2 23 0 342 0 0 0 chrX 8404980 8405018 -168569122 + (CA)n Simple_repeat Simple_repeat 2 39 0 1013 236 100 14 chrX 8405973 8406253 -168567887 + L1MD3 LINE L1 7323 7626 -369 1431 150 85 68 chrX 8406254 8406524 -168567616 + AluJo SINE Alu 1 278 -34 180 0 0 0 chrX 8406524 8406544 -168567596 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1431 150 85 68 chrX 8406544 8406580 -168567560 + AluJo SINE Alu 278 312 0 195 343 20 20 chrX 8406958 8407060 -168567080 + MIR3 SINE MIR 104 205 -3 228 281 101 11 chrX 8407165 8407254 -168566886 + L2 LINE L2 3176 3272 0 1259 164 5 5 chrX 8407653 8407873 -168566267 - AluJo SINE Alu -7 305 86 948 181 80 38 chrX 8408202 8408440 -168565700 + MLT1F1 LTR MaLR 320 567 0 1423 213 113 19 chrX 8410254 8410677 -168563463 + MLT1C LTR MaLR 1 463 -4 180 111 0 0 chrX 8411987 8412014 -168562126 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1997 118 34 10 chrX 8412290 8412586 -168561554 - AluSx SINE Alu -9 303 1 2059 161 19 33 chrX 8413852 8414219 -168559921 + MLT1A1 LTR MaLR 3 364 -1 1888 190 69 35 chrX 8414947 8415111 -168559029 + MLT1C LTR MaLR 1 158 -309 2308 82 0 0 chrX 8415111 8415445 -168558695 + AluSx SINE Alu 1 334 0 1888 190 69 35 chrX 8415445 8415729 -168558411 + MLT1C LTR MaLR 158 467 0 1013 192 189 80 chrX 8416076 8416425 -168557715 - MLT1B LTR MaLR -3 387 1 491 206 56 0 chrX 8417660 8417767 -168556373 + MER20 DNA MER1_type 1 113 -106 828 130 32 87 chrX 8417769 8417954 -168556186 - MER20 DNA MER1_type -41 178 4 2193 82 0 0 chrX 8420926 8421235 -168552905 - AluSq SINE Alu 0 309 1 1494 191 69 29 chrX 8421516 8421893 -168552247 + L1MB4 LINE L1 5789 6180 0 21 36 0 0 chrX 8422871 8422899 -168551241 + AT_rich Low_complexity Low_complexity 1 28 0 1606 210 108 25 chrX 8423985 8424564 -168549576 - L1MD3 LINE L1 -5 7990 7267 762 223 22 33 chrX 8424974 8425158 -168548982 + MLT1C LTR MaLR 286 467 0 1312 175 64 46 chrX 8425339 8425452 -168548688 - MER96B DNA MER1_type? 0 417 308 2222 85 17 0 chrX 8425452 8425747 -168548393 + AluSx SINE Alu 1 300 -12 1312 175 64 46 chrX 8425747 8425959 -168548181 - MER96B DNA MER1_type? -109 308 86 1559 232 35 26 chrX 8425961 8426029 -168548111 + L1MB8 LINE L1 5720 5786 -392 1187 217 102 6 chrX 8426029 8426343 -168547797 + MER2 DNA MER2_type 1 344 0 1559 232 35 26 chrX 8426343 8426727 -168547413 + L1MB8 LINE L1 5786 6176 -2 354 261 0 0 chrX 8426736 8426824 -168547316 + MER96B DNA MER1_type? 325 412 -5 1723 156 7 3 chrX 8427435 8427724 -168546416 - AluJo SINE Alu -10 302 13 3516 171 30 24 chrX 8427736 8428407 -168545733 - L1MB2 LINE L1 -43 6128 5454 202 204 0 0 chrX 8428413 8428457 -168545683 - MIR SINE MIR -118 144 101 1061 248 148 9 chrX 8428458 8428797 -168545343 + MLT1B LTR MaLR 1 386 -4 309 286 238 0 chrX 8428895 8429000 -168545140 - MER5A DNA MER1_type -7 182 53 220 271 146 10 chrX 8429206 8429302 -168544838 + MER5C DNA MER1_type 212 320 -4 881 186 10 31 chrX 8429340 8429533 -168544607 - L1MB5 LINE L1 0 6174 5986 482 161 117 29 chrX 8429533 8429662 -168544478 - L1MB5 LINE L1 -228 5946 5803 561 312 115 23 chrX 8430052 8430488 -168543652 - L1MB5 LINE L1 -2069 5739 5264 221 288 128 24 chrX 8430590 8430715 -168543425 - MIR SINE MIR -11 251 114 723 197 165 101 chrX 8430928 8431321 -168542819 + MLT1C LTR MaLR 33 467 0 476 314 39 18 chrX 8431332 8431561 -168542579 + L1MC5 LINE L1 7692 7925 -36 743 142 112 18 chrX 8432694 8432863 -168541277 - MER20 DNA MER1_type -2 217 33 2352 132 64 58 chrX 8433273 8433742 -168540398 + MER4B LTR ERV1 1 472 -138 646 122 10 10 chrX 8433742 8433840 -168540300 + MER4A LTR ERV1 1 98 -566 1958 129 9 22 chrX 8433849 8434190 -168539950 + MER4A LTR ERV1 270 664 0 1232 77 0 0 chrX 8434209 8434365 -168539775 + MER4E LTR ERV1 611 766 0 741 180 0 0 chrX 8435990 8436118 -168538022 + FRAM SINE Alu 36 163 -13 820 177 96 53 chrX 8436676 8436885 -168537255 - MER20 DNA MER1_type 0 219 2 420 156 0 26 chrX 8437058 8437135 -168537005 - Charlie5 DNA MER1_type -2509 103 29 1928 148 0 3 chrX 8437331 8437635 -168536505 - AluJb SINE Alu -6 306 4 189 0 0 0 chrX 8437638 8437659 -168536481 + (T)n Simple_repeat Simple_repeat 1 21 0 1752 203 138 7 chrX 8438687 8439010 -168535130 + L1MB7 LINE L1 5666 6066 -118 1922 123 63 36 chrX 8439010 8439375 -168534765 + THE1C LTR MaLR 1 375 0 1752 203 138 7 chrX 8439375 8439499 -168534641 + L1MB7 LINE L1 6066 6172 -12 1472 145 76 46 chrX 8439870 8440173 -168533967 - AluJo SINE Alu 0 312 1 235 97 0 0 chrX 8441505 8441536 -168532604 + MLT1B LTR MaLR 358 388 -2 2667 150 2 9 chrX 8442344 8442797 -168531343 + L1MB3 LINE L1 5731 6180 -3 1163 197 10 0 chrX 8443115 8443323 -168530817 + MLT1B LTR MaLR 181 390 0 2463 64 0 0 chrX 8443378 8443689 -168530451 + AluY SINE Alu 1 311 0 806 149 113 0 chrX 8444678 8444819 -168529321 - FRAM SINE Alu -9 157 1 491 82 38 60 chrX 8444929 8445112 -168529028 + (CA)n Simple_repeat Simple_repeat 2 180 0 336 109 23 63 chrX 8445192 8445366 -168528774 + (CA)n Simple_repeat Simple_repeat 1 167 0 233 180 56 73 chrX 8445367 8445545 -168528595 + (CACAG)n Simple_repeat Simple_repeat 5 179 0 * 258 157 37 46 chrX 8445473 8445581 -168528559 + (CA)n Simple_repeat Simple_repeat 1 107 0 347 147 35 56 chrX 8445597 8445951 -168528189 + (CA)n Simple_repeat Simple_repeat 1 346 0 195 131 65 19 chrX 8445999 8446106 -168528034 + (CA)n Simple_repeat Simple_repeat 1 112 0 184 289 0 0 chrX 8446356 8446408 -168527732 - MIR SINE MIR -57 151 100 298 324 148 0 chrX 8447359 8447501 -168526639 + MIR3 SINE MIR 41 203 -5 1048 192 33 14 chrX 8448024 8448238 -168525902 + MER20 DNA MER1_type 2 219 0 1725 167 6 6 chrX 8448496 8448808 -168525332 - AluJb SINE Alu 0 312 1 536 293 72 71 chrX 8448810 8449061 -168525079 - HAL1 LINE L1 -160 2347 2098 2525 39 0 7 chrX 8449061 8449366 -168524774 - AluY SINE Alu -8 303 1 536 293 72 71 chrX 8449366 8449606 -168524534 - HAL1 LINE L1 -409 2098 1852 2250 84 0 3 chrX 8449606 8449903 -168524237 - AluSc SINE Alu -13 296 1 536 293 72 71 chrX 8449903 8450087 -168524053 - HAL1 LINE L1 -655 1852 1670 989 94 0 0 chrX 8450089 8450217 -168523923 - AluSq/x SINE Alu -184 128 1 506 261 86 37 chrX 8450218 8450463 -168523677 - HAL1 LINE L1 -868 1639 1383 916 180 115 6 chrX 8450600 8450783 -168523357 + MER3 DNA MER1_type 6 208 -1 477 226 0 20 chrX 8453307 8453409 -168520731 + MER20 DNA MER1_type 6 105 -114 265 359 68 13 chrX 8453948 8454182 -168519958 + MIR SINE MIR 7 253 -9 2116 117 3 0 chrX 8455812 8456119 -168518021 - AluSq SINE Alu -5 308 1 513 251 125 88 chrX 8457207 8457526 -168516614 + MLT1D LTR MaLR 2 332 -294 227 31 31 0 chrX 8457526 8457558 -168516582 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 772 195 5 70 chrX 8457567 8457681 -168516459 + MLT1D LTR MaLR 319 416 -89 1471 168 47 20 chrX 8457681 8457979 -168516161 - AluJo SINE Alu -6 306 1 772 195 5 70 chrX 8457979 8458064 -168516076 + MLT1D LTR MaLR 416 505 0 206 81 27 0 chrX 8458127 8458164 -168515976 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1766 157 7 4 chrX 8458169 8458449 -168515691 - AluJo SINE Alu -31 281 1 3407 177 38 7 chrX 8458636 8458976 -168515164 + L1MB7 LINE L1 5481 5809 -375 1629 181 7 16 chrX 8458976 8459286 -168514854 + AluJo SINE Alu 1 307 -5 3407 177 38 7 chrX 8459286 8459628 -168514512 + L1MB7 LINE L1 5809 6184 0 21 0 0 0 chrX 8460151 8460172 -168513968 + AT_rich Low_complexity Low_complexity 1 21 0 1323 179 0 4 chrX 8460174 8460403 -168513737 + AluJb SINE Alu 1 228 -84 1363 236 133 33 chrX 8460853 8461190 -168512950 - MLT1D LTR MaLR -7 498 103 1777 164 0 3 chrX 8461190 8461495 -168512645 - AluJo SINE Alu -8 304 1 1363 236 133 33 chrX 8461495 8461610 -168512530 - MLT1D LTR MaLR -402 103 1 215 220 40 0 chrX 8463233 8463283 -168510857 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 1129 183 5 23 chrX 8463333 8463552 -168510588 - MER20 DNA MER1_type -4 215 1 228 226 28 94 chrX 8464591 8464697 -168509443 - MER41D LTR ERV1 -86 471 373 584 243 89 22 chrX 8464776 8465086 -168509054 - MER58 DNA MER1_type -2 2418 4 952 258 122 103 chrX 8465945 8466735 -168507405 + L1MC4a LINE L1 5971 6745 -1063 2127 128 0 0 chrX 8466735 8467041 -168507099 + AluSx SINE Alu 1 306 -6 952 258 122 103 chrX 8467041 8467237 -168506903 + L1MC4a LINE L1 6745 6983 -825 2763 13 0 0 chrX 8467237 8467548 -168506592 + AluY SINE Alu 1 311 0 952 258 122 103 chrX 8467548 8467663 -168506477 + L1MC4a LINE L1 6983 7094 -714 423 228 105 35 chrX 8467694 8467808 -168506332 - MER58B DNA MER1_type -29 312 191 2197 87 0 3 chrX 8467817 8468116 -168506024 - AluY SINE Alu -6 305 8 423 281 253 18 chrX 8468143 8468538 -168505602 + L1MC4 LINE L1 7192 7679 -363 1700 163 13 23 chrX 8468794 8469095 -168505045 - AluJo SINE Alu -14 298 1 1637 103 0 0 chrX 8469130 8469354 -168504786 + AluSg/x SINE Alu 83 306 -6 2100 114 0 10 chrX 8469489 8469796 -168504344 + AluSp SINE Alu 1 304 -9 200 256 0 0 chrX 8470867 8470906 -168503234 + G-rich Low_complexity Low_complexity 1 39 0 277 224 0 0 chrX 8472094 8472152 -168501988 + MER69 DNA AcHobo 509 566 -1960 243 88 0 0 chrX 8472397 8472431 -168501709 + (A)n Simple_repeat Simple_repeat 1 34 0 334 309 58 80 chrX 8474586 8474861 -168499279 - L2 LINE L2 -34 3238 2970 300 325 86 0 chrX 8474903 8475054 -168499086 - MIR SINE MIR -21 241 78 347 200 0 0 chrX 8476511 8476576 -168497564 - MER3 DNA MER1_type -5 204 140 2518 147 60 4 chrX 8476576 8477046 -168497094 + L1MB3 LINE L1 5688 6183 0 2119 102 0 3 chrX 8477805 8478099 -168496041 + AluSc SINE Alu 1 293 -16 191 221 78 52 chrX 8479302 8479379 -168494761 - MIR SINE MIR 0 262 184 733 230 83 5 chrX 8479380 8479597 -168494543 + L1MB1 LINE L1 5911 6144 -24 302 139 76 38 chrX 8479794 8479873 -168494267 + L1MB8 LINE L1 6097 6178 0 1301 161 51 0 chrX 8481198 8481434 -168492706 - L1MB7 LINE L1 -8 6176 5929 1720 181 50 11 chrX 8481440 8481799 -168492341 + MLT1B LTR MaLR 14 386 -4 1996 122 0 10 chrX 8482325 8482620 -168491520 + AluSx SINE Alu 7 298 -14 799 85 0 0 chrX 8482625 8482731 -168491409 - FLAM_C SINE Alu -36 107 2 456 35 0 0 chrX 8482942 8483000 -168491140 + (CA)n Simple_repeat Simple_repeat 2 59 0 251 93 23 0 chrX 8483096 8483139 -168491001 + (TCTCCC)n Simple_repeat Simple_repeat 6 49 0 1580 170 37 13 chrX 8484394 8484694 -168489446 - AluJo SINE Alu -5 307 1 605 256 0 19 chrX 8485037 8485197 -168488943 - MER58A DNA MER1_type -28 196 40 1436 155 0 45 chrX 8486014 8486270 -168487870 + L1MB3 LINE L1 5817 6052 -131 1398 158 88 32 chrX 8486270 8486554 -168487586 + AluJo SINE Alu 1 300 -2 1436 155 0 45 chrX 8486554 8486598 -168487542 + L1MB3 LINE L1 6052 6096 -87 458 242 224 19 chrX 8486598 8486759 -168487381 + MER58B DNA MER1_type 147 340 -1 245 238 48 24 chrX 8486780 8486864 -168487276 + L1M1 LINE L1 17 102 -7463 791 192 50 50 chrX 8487580 8487778 -168486362 + MER58B DNA MER1_type 140 337 -4 188 109 55 18 chrX 8488172 8488227 -168485913 + CT-rich Low_complexity Low_complexity 2 58 0 210 118 0 0 chrX 8488227 8488261 -168485879 + (CA)n Simple_repeat Simple_repeat 1 34 0 247 219 86 29 chrX 8489247 8489352 -168484788 + L2 LINE L2 2555 2665 -649 1584 145 0 0 chrX 8489361 8489609 -168484531 + AluJo SINE Alu 59 306 -6 2290 190 45 28 chrX 8489628 8490087 -168484053 + L1MB2 LINE L1 5653 6123 -48 2421 81 0 0 chrX 8490087 8490394 -168483746 + AluSx SINE Alu 1 307 -5 2290 190 45 28 chrX 8490394 8490444 -168483696 + L1MB2 LINE L1 6123 6171 0 321 237 154 39 chrX 8490455 8490611 -168483529 + Charlie4 DNA MER1_type 1783 1956 -5 225 313 45 0 chrX 8490822 8490934 -168483206 + (GCGTG)n Simple_repeat Simple_repeat 4 120 0 1852 149 3 7 chrX 8492036 8492345 -168481795 + AluJo SINE Alu 1 308 -4 463 168 21 11 chrX 8492361 8492456 -168481684 - MER3 DNA MER1_type -49 160 65 897 230 4 57 chrX 8492572 8492820 -168481320 - MER8 DNA MER2_type -4 235 1 1698 175 0 19 chrX 8493237 8493545 -168480595 - AluJo SINE Alu -10 302 1 825 229 5 11 chrX 8494929 8495117 -168479023 + AluJo SINE Alu 121 307 -5 629 248 13 7 chrX 8496039 8496188 -168477952 - MER58B DNA MER1_type -18 323 174 1742 128 42 23 chrX 8496226 8496532 -168477608 - AluJo SINE Alu 0 312 1 789 180 101 37 chrX 8498330 8498547 -168475593 - L1MB8 LINE L1 0 6178 5948 364 246 48 97 chrX 8499555 8499783 -168474357 + L1MD2 LINE L1 6143 6359 0 1011 178 29 34 chrX 8500149 8500237 -168473903 - MER20 DNA MER1_type -11 208 121 2052 157 99 20 chrX 8500237 8500632 -168473508 + MSTB LTR MaLR 1 426 0 1011 178 29 34 chrX 8500632 8500751 -168473389 - MER20 DNA MER1_type -98 121 2 375 299 84 13 chrX 8500802 8500956 -168473184 - MIR SINE MIR -8 254 90 2082 87 33 3 chrX 8501556 8501856 -168472284 + AluSx SINE Alu 1 309 -3 231 129 0 0 chrX 8502173 8502204 -168471936 + AluJb SINE Alu 1 31 -277 1723 148 14 0 chrX 8502206 8502490 -168471650 + AluJb SINE Alu 11 298 -14 656 181 0 97 chrX 8503231 8503339 -168470801 - MER58B DNA MER1_type -2094 326 236 1995 138 44 99 chrX 8503339 8503775 -168470365 - MLT2D LTR ERVL -2 412 1 656 181 0 97 chrX 8503775 8503821 -168470319 - MER58B DNA MER1_type -2184 236 187 919 160 71 6 chrX 8504099 8504268 -168469872 - MER20 DNA MER1_type 0 219 40 1962 142 0 3 chrX 8504569 8504872 -168469268 + AluJb SINE Alu 1 302 -10 2044 57 89 14 chrX 8504969 8505249 -168468891 - AluY SINE Alu -10 301 1 23059 130 68 23 chrX 8505276 8511345 -168462795 - L1PA8A LINE L1 -21 6425 1 299 194 31 0 chrX 8511358 8511430 -168462710 - MLT1A2 LTR MaLR -65 363 257 378 239 37 45 chrX 8511430 8511564 -168462576 - MLT1A2 LTR MaLR -76 298 166 229 184 0 0 chrX 8511559 8511597 -168462543 - MSTD LTR MaLR -140 256 219 * 183 220 0 60 chrX 8511641 8511691 -168462449 - L2 LINE L2 -69 3244 3198 231 288 15 15 chrX 8511732 8511798 -168462342 + MIR SINE MIR 18 83 -179 1195 194 26 15 chrX 8512090 8512363 -168461777 - MER33 DNA MER1_type -47 277 2 345 231 66 11 chrX 8513117 8513208 -168460932 - MIR SINE MIR -161 101 6 953 223 14 18 chrX 8513324 8513544 -168460596 - MER20 DNA MER1_type 0 219 1 2189 101 0 3 chrX 8513742 8514040 -168460100 - AluSq SINE Alu -14 299 3 1878 144 26 7 chrX 8514046 8514352 -168459788 - AluJo SINE Alu 0 312 1 2217 100 0 7 chrX 8514360 8514661 -168459479 - AluSq SINE Alu -14 299 1 792 144 0 30 chrX 8516319 8516451 -168457689 + FLAM_C SINE Alu 1 128 -5 676 188 0 19 chrX 8516454 8516614 -168457526 + GA-rich Low_complexity Low_complexity 2 158 0 346 148 0 0 chrX 8516616 8516670 -168457470 - AluJ/FLAM SINE Alu -210 92 39 1943 148 0 0 chrX 8516923 8517228 -168456912 - AluJb SINE Alu -7 305 1 268 295 26 0 chrX 8517762 8517840 -168456300 + MER116 DNA Mariner 1 80 0 2250 226 127 3 chrX 8518317 8518898 -168455242 - MER82 DNA MER2_type 0 653 1 34 24 0 0 chrX 8519742 8519783 -168454357 + AT_rich Low_complexity Low_complexity 1 41 0 196 69 0 0 chrX 8520555 8520584 -168453556 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1514 168 7 34 chrX 8520584 8520875 -168453265 - AluJb SINE Alu -1 311 1 540 0 0 0 chrX 8521456 8521516 -168452624 + (CA)n Simple_repeat Simple_repeat 2 61 0 1120 144 0 0 chrX 8522848 8523015 -168451125 + AluJb SINE Alu 135 301 -11 318 26 0 0 chrX 8523015 8523054 -168451086 + (TA)n Simple_repeat Simple_repeat 1 39 0 1801 149 0 13 chrX 8523077 8523379 -168450761 + AluJo SINE Alu 6 303 -9 214 229 0 21 chrX 8523769 8523817 -168450323 - MER5A DNA MER1_type -3 186 140 948 172 37 42 chrX 8523821 8524036 -168450104 - MER20 DNA MER1_type 0 219 6 1560 180 10 16 chrX 8524084 8524390 -168449750 + AluJo SINE Alu 1 304 -8 263 270 52 26 chrX 8524565 8524680 -168449460 + MLT1I LTR MaLR 57 174 -375 310 118 224 0 chrX 8524844 8524929 -168449211 + MLT1I LTR MaLR 281 384 -25 751 138 17 0 chrX 8525369 8525485 -168448655 + FLAM_C SINE Alu 1 118 -15 201 156 0 0 chrX 8525485 8525517 -168448623 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 2330 190 36 20 chrX 8525684 8526179 -168447961 + MLT1D LTR MaLR 1 503 -2 1549 188 63 12 chrX 8526886 8527221 -168446919 + L1MB7 LINE L1 5833 6184 0 2945 133 23 40 chrX 8527522 8527821 -168446319 - MER4B LTR ERV1 0 779 476 1650 187 20 0 chrX 8527821 8528115 -168446025 + AluJb SINE Alu 1 300 -12 2945 133 23 40 chrX 8528115 8528404 -168445736 - MER4B LTR ERV1 -303 476 31 26 0 0 0 chrX 8528430 8528456 -168445684 + AT_rich Low_complexity Low_complexity 1 26 0 623 179 4 197 chrX 8529091 8529260 -168444880 + MER5A DNA MER1_type 1 114 -75 1499 167 10 38 chrX 8529260 8529553 -168444587 - AluJo SINE Alu -25 287 3 623 179 4 197 chrX 8529553 8529617 -168444523 + MER5A DNA MER1_type 114 189 0 1323 238 49 46 chrX 8529620 8530048 -168444092 + L1ME1 LINE L1 5681 6091 -71 1575 121 111 35 chrX 8530048 8530337 -168443803 + AluJo SINE Alu 1 311 -1 1323 238 49 46 chrX 8530337 8530408 -168443732 + L1ME1 LINE L1 6091 6160 -2 567 222 58 48 chrX 8531178 8531350 -168442790 - MER20 DNA MER1_type 0 219 46 619 183 35 9 chrX 8531350 8531465 -168442675 - LTR8A LTR ERV1 0 727 610 615 104 26 70 chrX 8531475 8531590 -168442550 - LTR8A LTR ERV1 -617 110 1 691 243 24 18 chrX 8531593 8531762 -168442378 - MER4B-int LTR ERV1 -4 6259 6090 765 169 77 64 chrX 8531840 8532116 -168442024 - MER4B-int LTR ERV1 -105 6226 5914 7611 150 59 49 chrX 8532125 8533850 -168440290 - MER4B-int LTR ERV1 -529 5417 3805 7011 102 58 36 chrX 8533849 8534102 -168440038 - MER4B-int LTR ERV1 -1802 3078 2832 * 2128 84 3 14 chrX 8534102 8534389 -168439751 + AluSp SINE Alu 2 285 -28 243 0 0 0 chrX 8534389 8534416 -168439724 + (CA)n Simple_repeat Simple_repeat 2 28 0 7011 102 58 36 chrX 8534416 8534888 -168439252 - MER4B-int LTR ERV1 -2048 2832 2315 2053 85 41 0 chrX 8534888 8535178 -168438962 - AluSg SINE Alu 0 301 1 7011 102 58 36 chrX 8535178 8535584 -168438556 - MER4B-int LTR ERV1 -2565 2315 1919 1727 147 102 30 chrX 8535586 8535947 -168438193 - LTR8A LTR ERV1 -340 387 1 284 114 0 65 chrX 8536249 8536295 -168437845 - MIR SINE MIR -50 158 115 814 247 28 13 chrX 8536449 8536701 -168437439 + L1MB7 LINE L1 5926 6334 0 1897 100 40 27 chrX 8538809 8539136 -168435004 + AluSx SINE Alu 1 312 0 2170 100 0 0 chrX 8539181 8539481 -168434659 + AluSx SINE Alu 1 300 -12 23 0 0 0 chrX 8540125 8540148 -168433992 + AT_rich Low_complexity Low_complexity 1 23 0 2177 86 17 0 chrX 8541428 8541718 -168432422 - AluY SINE Alu -16 295 1 1285 169 61 102 chrX 8541763 8542076 -168432064 + AluJo SINE Alu 1 300 -2 2036 126 3 0 chrX 8543421 8543722 -168430418 + AluSq SINE Alu 1 302 -11 1710 111 71 7 chrX 8543800 8544080 -168430060 + AluSx SINE Alu 1 298 -14 761 71 27 18 chrX 8544084 8544196 -168429944 + L1MA2 LINE L1 6135 6247 -57 960 229 73 89 chrX 8544364 8544735 -168429405 - MLT1J LTR MaLR 0 511 147 203 262 0 0 chrX 8544735 8544796 -168429344 + T-rich Low_complexity Low_complexity 1 61 0 2042 113 0 0 chrX 8544825 8545107 -168429033 - AluSq SINE Alu -31 282 1 286 315 35 14 chrX 8545107 8545250 -168428890 - MLT1J LTR MaLR -355 156 11 1985 105 54 0 chrX 8546855 8547149 -168426991 - AluSg SINE Alu 0 310 1 954 172 0 6 chrX 8547370 8547544 -168426596 - FRAM SINE Alu -4 172 1 1273 226 40 17 chrX 8547544 8547840 -168426300 - MLT1D LTR MaLR -202 303 1 1550 164 25 21 chrX 8547876 8548156 -168425984 + AluJo SINE Alu 2 282 -30 715 214 6 40 chrX 8548450 8548623 -168425517 - L1MB7 LINE L1 -16 6168 6002 575 122 41 10 chrX 8548631 8548729 -168425411 - L1MB7 LINE L1 -268 5916 5816 409 141 14 28 chrX 8549309 8549380 -168424760 - MLT1A1 LTR MaLR -1 364 295 2128 106 3 0 chrX 8549380 8549672 -168424468 + AluSx SINE Alu 1 293 -19 910 171 56 60 chrX 8549672 8549735 -168424405 + L1MB5 LINE L1 5612 5674 -500 1808 152 7 0 chrX 8549735 8550024 -168424116 + AluJo SINE Alu 1 291 -21 910 171 56 60 chrX 8550024 8550176 -168423964 + L1MB5 LINE L1 5674 5826 -348 1552 156 15 7 chrX 8550184 8550453 -168423687 + AluJb SINE Alu 8 278 -34 771 173 8 0 chrX 8550484 8550611 -168423529 + FLAM_C SINE Alu 5 132 -11 1134 157 10 5 chrX 8550616 8550813 -168423327 + L1MB5 LINE L1 5816 6013 -161 1697 120 70 94 chrX 8550817 8551257 -168422883 - THE1C LTR MaLR 0 375 1 901 160 0 0 chrX 8551261 8551411 -168422729 + L1MB5 LINE L1 6017 6166 -8 1076 206 14 14 chrX 8552337 8552546 -168421594 + MER58A DNA MER1_type 1 209 -15 200 182 0 0 chrX 8553032 8553065 -168421075 + CT-rich Low_complexity Low_complexity 5 37 0 261 0 0 0 chrX 8553204 8553233 -168420907 + (T)n Simple_repeat Simple_repeat 1 29 0 2157 87 0 13 chrX 8554973 8555272 -168418868 - AluSx SINE Alu -16 296 2 527 193 67 8 chrX 8555363 8555482 -168418658 + L1ME4a LINE L1 5962 6087 -34 2150 97 3 0 chrX 8555525 8555815 -168418325 - AluSq SINE Alu -17 296 6 1936 132 20 0 chrX 8555891 8556187 -168417953 - AluSx SINE Alu -10 302 1 768 132 6 93 chrX 8556196 8556378 -168417762 + L1MD3 LINE L1 7822 7987 -8 827 125 0 56 chrX 8556999 8557143 -168416997 - AluJb SINE Alu -5 307 172 2034 113 0 0 chrX 8557143 8557418 -168416722 - AluSx SINE Alu -37 275 1 1324 143 95 0 chrX 8557730 8557961 -168416179 + AluJo SINE Alu 35 287 -25 1903 136 3 23 chrX 8558330 8558638 -168415502 - AluJo SINE Alu -10 302 1 180 77 0 0 chrX 8558927 8558953 -168415187 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 892 152 7 0 chrX 8558960 8559098 -168415042 - FRAM SINE Alu -30 146 8 207 100 0 0 chrX 8559471 8559501 -168414639 + (A)n Simple_repeat Simple_repeat 1 30 0 191 242 19 25 chrX 8560139 8560296 -168413844 + CT-rich Low_complexity Low_complexity 2 157 0 194 128 26 0 chrX 8560355 8560394 -168413746 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 766 212 35 6 chrX 8560826 8560996 -168413144 - MER20 DNA MER1_type -44 175 1 704 106 0 0 chrX 8561225 8561319 -168412821 + AluSq/x SINE Alu 41 134 -179 1889 128 6 3 chrX 8561319 8561631 -168412509 + AluSq SINE Alu 1 313 0 1454 176 49 14 chrX 8562231 8562515 -168411625 - AluJb SINE Alu -18 294 1 1625 199 92 0 chrX 8562522 8562893 -168411247 - L1MB7 LINE L1 0 6184 5780 1545 158 12 79 chrX 8562895 8563224 -168410916 - AluJo SINE Alu -5 307 1 270 326 39 31 chrX 8563229 8563358 -168410782 - L2 LINE L2 -2 3270 3141 719 167 0 16 chrX 8563654 8563780 -168410360 + FLAM_A SINE Alu 1 124 -9 2243 106 6 0 chrX 8566132 8566443 -168407697 - AluSq SINE Alu 0 313 1 2121 117 3 13 chrX 8567353 8567662 -168406478 - AluSx SINE Alu -6 306 1 1118 128 137 10 chrX 8568863 8569067 -168405073 - AluSx SINE Alu -19 293 64 2097 148 26 0 chrX 8570031 8570370 -168403770 - MER7A DNA MER2_type 0 346 1 1542 171 45 31 chrX 8571421 8571708 -168402432 - AluJo SINE Alu -21 291 1 806 269 138 18 chrX 8572004 8572395 -168401745 - L2 LINE L2 -17 3296 2859 1632 202 20 69 chrX 8572668 8573251 -168400889 - LTR27 LTR ERV1 0 969 1 225 0 0 0 chrX 8574237 8574262 -168399878 + (T)n Simple_repeat Simple_repeat 1 25 0 1496 190 15 0 chrX 8574891 8575160 -168398980 - Tigger3(Golem) DNA MER2_type -1 3028 2756 8044 109 47 6 chrX 8575415 8576657 -168397483 - HSMAR2 DNA Mariner -1 1301 9 859 265 75 69 chrX 8577050 8577586 -168396554 + LTR67 LTR ERVL 11 549 -8 222 309 161 7 chrX 8577882 8578031 -168396109 - L2 LINE L2 -1614 1700 1529 1949 168 3 0 chrX 8578170 8578474 -168395666 + AluSx SINE Alu 1 305 -7 1146 144 78 6 chrX 8578479 8578659 -168395481 - AluJb SINE Alu -31 281 89 27 62 0 0 chrX 8582944 8582992 -168391148 + AT_rich Low_complexity Low_complexity 1 48 0 192 77 0 0 chrX 8583139 8583165 -168390975 + (GA)n Simple_repeat Simple_repeat 2 27 0 379 241 12 0 chrX 8584084 8584167 -168389973 + MER58A DNA MER1_type 2 85 -22 407 187 18 10 chrX 8584577 8584598 -168389542 - MER20 DNA MER1_type -143 76 57 1766 198 15 0 chrX 8584598 8584941 -168389199 + MER7A DNA MER2_type 1 346 0 407 187 18 10 chrX 8584941 8585016 -168389124 - MER20 DNA MER1_type -162 57 3 864 291 128 10 chrX 8585484 8585897 -168388243 + LTR16B LTR ERVL 3 464 0 937 103 8 0 chrX 8586129 8586255 -168387885 + FLAM_C SINE Alu 1 127 -16 2327 108 0 3 chrX 8586515 8586821 -168387319 + AluSx SINE Alu 1 305 -7 2389 106 3 0 chrX 8587606 8587917 -168386223 + AluSx SINE Alu 1 312 0 1967 125 27 27 chrX 8588886 8589183 -168384957 - AluJo SINE Alu -15 297 1 825 160 0 0 chrX 8589362 8589493 -168384647 + FLAM_C SINE Alu 1 131 -2 2126 119 26 19 chrX 8589990 8590300 -168383840 - AluJb SINE Alu 0 312 1 1684 155 50 0 chrX 8591365 8591643 -168382497 - AluJb SINE Alu -20 292 1 629 291 70 80 chrX 8593625 8594054 -168380086 - L1M4c LINE L1 -4848 1798 1366 1674 147 134 31 chrX 8594054 8594441 -168379699 + MSTA LTR MaLR 2 428 0 629 291 70 80 chrX 8594441 8594499 -168379641 - L1M4c LINE L1 -5280 1366 1309 1370 170 129 15 chrX 8594499 8594770 -168379370 - AluJo SINE Alu 0 302 1 629 291 70 80 chrX 8594770 8594929 -168379211 - L1M4c LINE L1 -5337 1309 1134 1583 179 47 24 chrX 8595344 8595640 -168378500 - AluJo SINE Alu -9 303 1 291 211 0 0 chrX 8596918 8597013 -168377127 + CT-rich Low_complexity Low_complexity 5 99 0 615 252 7 0 chrX 8597472 8597615 -168376525 + MER82 DNA MER2_type 25 168 -485 1194 133 12 0 chrX 8597617 8597782 -168376358 - AluJo/FRAM SINE Alu -8 304 138 2018 147 0 19 chrX 8597782 8598089 -168376051 - AluJo SINE Alu -11 301 1 1140 99 14 94 chrX 8598561 8598774 -168375366 - MER30 DNA MER1_type -34 196 1 529 270 20 7 chrX 8598969 8599117 -168375023 - L1MD3 LINE L1 -14 7981 7832 807 274 91 13 chrX 8599132 8599439 -168374701 - L1MD2 LINE L1 -234 6125 5795 272 136 0 0 chrX 8600216 8600260 -168373880 + L1MB5 LINE L1 6019 6062 -112 2075 116 0 0 chrX 8600996 8601264 -168372876 + AluSx SINE Alu 35 302 -10 2384 219 44 4 chrX 8601408 8601948 -168372192 + MER68 LTR ERV1 1 562 0 1795 176 4 4 chrX 8602163 8602441 -168371699 - AluJo SINE Alu -34 278 1 1872 154 3 0 chrX 8602467 8602753 -168371387 - AluJo SINE Alu -25 287 1 180 0 0 0 chrX 8602784 8602804 -168371336 + (CAA)n Simple_repeat Simple_repeat 2 21 0 829 227 75 14 chrX 8602975 8603253 -168370887 - MER33 DNA MER1_type 0 324 30 911 62 86 0 chrX 8603269 8603397 -168370743 + MER85 DNA T2_type 1 139 0 416 277 50 37 chrX 8604484 8604654 -168369486 + MIR SINE MIR 32 204 -58 1134 175 9 31 chrX 8604956 8605179 -168368961 - MER58A DNA MER1_type 0 224 7 2087 82 56 0 chrX 8605244 8605551 -168368589 - AluSp SINE Alu 0 322 1 1364 121 5 33 chrX 8605606 8605857 -168368283 - AluSq SINE Alu 0 318 74 2295 108 0 0 chrX 8607535 8607832 -168366308 + AluSx SINE Alu 1 297 -15 2416 95 3 3 chrX 8608783 8609089 -168365051 - AluSx SINE Alu -6 306 1 1581 181 23 0 chrX 8609199 8609320 -168364820 + AluJo SINE Alu 2 119 -193 207 0 0 0 chrX 8609320 8609343 -168364797 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1581 181 23 0 chrX 8609343 8609480 -168364660 + AluJo SINE Alu 119 266 -46 466 211 26 26 chrX 8609495 8609609 -168364531 + MER58A DNA MER1_type 3 116 0 * 2036 178 27 5 chrX 8609608 8609984 -168364156 + MLT1B LTR MaLR 1 384 -6 457 248 46 0 chrX 8609990 8610099 -168364041 + MER58A DNA MER1_type 111 224 0 426 272 0 0 chrX 8611134 8611296 -168362844 + (CA)n Simple_repeat Simple_repeat 1 162 0 204 182 0 0 chrX 8612059 8612103 -168362037 + (CCG)n Simple_repeat Simple_repeat 3 46 0 843 228 20 18 chrX 8612543 8612765 -168361375 + MER20 DNA MER1_type 7 219 0 1753 185 3 3 chrX 8613534 8613826 -168360314 - AluJo SINE Alu -19 293 2 1966 121 49 39 chrX 8614223 8614530 -168359610 + AluJo SINE Alu 1 310 -2 898 174 0 0 chrX 8614807 8614945 -168359195 + AluJb SINE Alu 156 293 -19 1765 168 9 37 chrX 8615619 8615940 -168358200 - AluJb SINE Alu 0 312 1 220 352 101 25 chrX 8618759 8618918 -168355222 - MIR SINE MIR -75 187 17 275 282 111 0 chrX 8619657 8619801 -168354339 + MIR3 SINE MIR 4 160 -62 1763 196 37 0 chrX 8619988 8620340 -168353800 + MLT1A1 LTR MaLR 1 365 0 842 167 48 12 chrX 8620834 8621002 -168353138 - MER20 DNA MER1_type 0 219 46 1178 227 0 0 chrX 8621772 8621992 -168352148 + MER58A DNA MER1_type 1 220 -4 338 263 0 0 chrX 8622004 8622080 -168352060 - MER2 DNA MER2_type 0 345 270 256 333 0 0 chrX 8622330 8622408 -168351732 + MIR3 SINE MIR 119 196 -12 319 230 82 59 chrX 8622442 8622577 -168351563 - MER74B LTR ERVL -13 609 472 2380 89 0 22 chrX 8624327 8624641 -168349499 - AluSq SINE Alu -6 307 1 1636 187 21 3 chrX 8625365 8625538 -168348602 + AluJb SINE Alu 3 184 -128 216 0 0 0 chrX 8625538 8625562 -168348578 + (G)n Simple_repeat Simple_repeat 1 24 0 1636 187 21 3 chrX 8625562 8625677 -168348463 + AluJb SINE Alu 184 296 -16 1700 174 0 14 chrX 8625679 8625966 -168348174 + AluJb SINE Alu 1 283 -29 486 143 0 0 chrX 8625999 8626076 -168348064 + MER83B LTR ERV1 226 302 -76 21 0 0 0 chrX 8626078 8626099 -168348041 + AT_rich Low_complexity Low_complexity 1 21 0 2116 111 7 10 chrX 8626173 8626461 -168347679 - AluSx SINE Alu -25 287 1 329 234 0 0 chrX 8626468 8626532 -168347608 + MER2 DNA MER2_type 282 345 0 207 204 0 0 chrX 8626563 8626617 -168347523 + (TA)n Simple_repeat Simple_repeat 1 54 0 494 299 54 9 chrX 8626669 8626893 -168347247 + MIR SINE MIR 29 262 0 2129 108 78 9 chrX 8627060 8627394 -168346746 + MLT1A1 LTR MaLR 9 365 0 1481 186 43 25 chrX 8628833 8629156 -168344984 + MER77 LTR ERV1 277 605 0 2528 178 78 68 chrX 8629671 8630391 -168343749 - LTR8A LTR ERV1 0 727 1 1514 220 36 3 chrX 8630391 8630700 -168343440 - HUERS-P1 LTR ERV1 0 6263 5945 780 176 171 40 chrX 8630778 8630977 -168343163 - HUERS-P1 LTR ERV1 -57 6274 6050 12865 161 69 57 chrX 8631020 8632985 -168341155 - HUERS-P1 LTR ERV1 -341 6257 4316 1862 62 9 0 chrX 8632985 8633212 -168340928 - AluY SINE Alu -33 278 50 12865 161 69 57 chrX 8633212 8634703 -168339437 - HUERS-P1 LTR ERV1 -2282 4316 2011 450 0 0 0 chrX 8634703 8634753 -168339387 + (TA)n Simple_repeat Simple_repeat 1 50 0 12865 161 69 57 chrX 8634753 8634788 -168339352 - HUERS-P1 LTR ERV1 -4587 2011 1978 489 205 26 43 chrX 8634788 8634905 -168339235 - LTR8A LTR ERV1 -612 115 1 586 264 122 10 chrX 8635255 8635452 -168338688 + MER20 DNA MER1_type 1 219 0 862 285 62 53 chrX 8636222 8636455 -168337685 - L1MD2 LINE L1 -214 6145 5905 2271 116 0 6 chrX 8636455 8636766 -168337374 - AluSx SINE Alu -3 309 1 862 285 62 53 chrX 8636766 8636964 -168337176 - L1MD2 LINE L1 -454 5905 5710 305 115 0 0 chrX 8637221 8637273 -168336867 - L1MB3 LINE L1 -7 6176 6125 1353 166 8 36 chrX 8637279 8637532 -168336608 - AluJo SINE Alu -25 287 42 2147 174 10 17 chrX 8637532 8637947 -168336193 - L1MB3 LINE L1 -42 6141 5730 1673 147 90 4 chrX 8638705 8638971 -168335169 - AluJb SINE Alu -17 295 7 1200 151 31 5 chrX 8639096 8639406 -168334734 - MLT1A1 LTR MaLR 0 365 1 1816 235 26 22 chrX 8640543 8641041 -168333099 + L1ME1 LINE L1 5566 6065 -101 1671 122 3 107 chrX 8641116 8641443 -168332697 + AluJb SINE Alu 1 293 -19 2534 91 37 6 chrX 8641989 8642342 -168331798 - THE1B LTR MaLR 0 364 1 1216 229 93 34 chrX 8644645 8645086 -168329054 + MLT1C LTR MaLR 1 467 0 2392 69 0 0 chrX 8647068 8647358 -168326782 - AluSc SINE Alu -19 290 1 1753 170 26 7 chrX 8647362 8647668 -168326472 - AluJb SINE Alu 0 312 1 345 171 8 179 chrX 8647900 8648017 -168326123 + MLT1F LTR MaLR 55 163 -430 1257 203 32 7 chrX 8648064 8648345 -168325795 + MLT1E1 LTR MaLR 367 654 0 1975 125 6 55 chrX 8648898 8649226 -168324914 + AluJb SINE Alu 1 312 0 300 135 68 54 chrX 8649720 8649794 -168324346 - MIR3 SINE MIR -25 183 109 402 221 176 22 chrX 8649904 8650040 -168324100 - MER20 DNA MER1_type -62 157 1 1650 175 0 56 chrX 8650152 8650455 -168323685 + AluJo SINE Alu 1 286 -26 1608 136 4 0 chrX 8654909 8655144 -168318996 + AluJb SINE Alu 61 296 -16 2111 132 0 10 chrX 8655288 8655599 -168318541 + AluSx SINE Alu 5 312 0 1631 182 0 33 chrX 8656367 8656674 -168317466 - AluJb SINE Alu -15 297 1 808 187 91 5 chrX 8656906 8657104 -168317036 - MER20 DNA MER1_type 0 219 5 693 257 6 0 chrX 8657381 8657556 -168316584 + MER58B DNA MER1_type 163 338 -3 1270 161 96 45 chrX 8658189 8658524 -168315616 + L1MB7 LINE L1 5546 5897 -287 2050 110 11 14 chrX 8659312 8659633 -168314507 + AluSx SINE Alu 1 320 0 39 60 0 0 chrX 8660262 8660329 -168313811 + AT_rich Low_complexity Low_complexity 1 67 0 378 0 0 0 chrX 8663715 8663757 -168310383 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1641 204 105 15 chrX 8663765 8663829 -168310311 - L1MB5 LINE L1 -1 6179 6122 828 123 0 43 chrX 8663829 8663967 -168310173 - FLAM_C SINE Alu -1 132 1 1641 204 105 15 chrX 8663967 8664372 -168309768 - L1MB5 LINE L1 -58 6122 5689 466 145 13 0 chrX 8664956 8665032 -168309108 + MER20 DNA MER1_type 30 106 -113 415 265 88 6 chrX 8665109 8665290 -168308850 + MLT1F LTR MaLR 269 464 -78 895 119 0 0 chrX 8665591 8665709 -168308431 + FLAM_C SINE Alu 1 118 -25 222 281 0 24 chrX 8665721 8665803 -168308337 - MIR SINE MIR 0 262 183 21 0 0 0 chrX 8665803 8665824 -168308316 + AT_rich Low_complexity Low_complexity 1 21 0 216 362 34 0 chrX 8665900 8666049 -168308091 - MIR SINE MIR -94 168 15 2199 94 3 14 chrX 8717480 8717777 -168256363 + AluSp SINE Alu 1 294 -19 1386 244 90 5 chrX 8718212 8718614 -168255526 + L1MD3 LINE L1 7560 7995 0 1538 160 23 20 chrX 8718752 8719052 -168255088 + AluJo SINE Alu 1 301 -11 1712 166 3 3 chrX 8719322 8719623 -168254517 - AluJb SINE Alu -11 301 1 476 157 29 0 chrX 8719696 8719798 -168254342 + GA-rich Low_complexity Low_complexity 5 109 0 245 234 31 16 chrX 8719801 8719865 -168254275 + MLT2C1 LTR ERVL 2 66 -331 1842 219 13 44 chrX 8719871 8720345 -168253795 - MLT1C LTR MaLR -8 459 1 859 206 110 77 chrX 8720345 8720669 -168253471 + MLT2C1 LTR ERVL 60 394 -3 319 254 15 142 chrX 8720965 8721170 -168252970 + MIR SINE MIR 30 208 -54 2178 90 3 0 chrX 8721449 8721737 -168252403 - AluSq SINE Alu -24 289 1 509 120 0 0 chrX 8722219 8722294 -168251846 - U3 snRNA snRNA -130 87 13 2250 76 0 7 chrX 8723110 8723414 -168250726 - AluSc SINE Alu -7 302 1 1826 144 11 0 chrX 8724339 8724653 -168249487 + AluJb SINE Alu 1 317 0 2134 72 3 28 chrX 8724728 8724909 -168249231 - AluY SINE Alu 0 307 135 198 0 0 0 chrX 8724909 8724931 -168249209 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2134 72 3 28 chrX 8724931 8725063 -168249077 - AluY SINE Alu -172 135 1 207 180 120 0 chrX 8726137 8726187 -168247953 + L2 LINE L2 3257 3312 -1 1926 168 18 31 chrX 8726197 8726579 -168247561 + L1MB5 LINE L1 5798 6174 0 1033 106 0 0 chrX 8727391 8727523 -168246617 - AluSg/x SINE Alu -25 287 156 1077 243 130 18 chrX 8728622 8728695 -168245445 + MLT1E LTR MaLR 20 83 -510 2363 89 6 13 chrX 8728695 8729008 -168245132 - AluSx SINE Alu -1 311 1 1077 243 130 18 chrX 8729008 8729191 -168244949 + MLT1E LTR MaLR 83 244 -349 1773 185 0 30 chrX 8729191 8729493 -168244647 - AluJb SINE Alu -19 293 1 1077 243 130 18 chrX 8729493 8729704 -168244436 + MLT1E LTR MaLR 244 585 -8 2264 159 10 8 chrX 8729705 8730094 -168244046 + MLT1B LTR MaLR 1 390 0 296 130 0 0 chrX 8731029 8731075 -168243065 + Alu SINE Alu 247 292 -10 343 206 65 0 chrX 8731381 8731473 -168242667 + MLT2B2 LTR ERVL 1 98 -417 280 335 97 0 chrX 8731495 8731650 -168242490 + MIR SINE MIR 80 249 -13 733 231 27 43 chrX 8731841 8731961 -168242179 - MER5A DNA MER1_type 0 189 72 2331 83 17 3 chrX 8731961 8732262 -168241878 - AluSx SINE Alu -7 305 1 733 231 27 43 chrX 8732262 8732327 -168241813 - MER5A DNA MER1_type -117 72 7 1927 85 114 14 chrX 8732367 8732648 -168241492 - AluSg SINE Alu 0 310 2 447 197 0 0 chrX 8733109 8733185 -168240955 + AluS SINE Alu 3 78 -234 324 276 9 19 chrX 8733193 8733298 -168240842 - MLT2B1 LTR ERVL -331 189 86 1652 136 70 86 chrX 8733300 8733602 -168240538 + AluJb SINE Alu 1 297 -15 2321 88 3 0 chrX 8733858 8734168 -168239972 + AluSp SINE Alu 1 311 0 1678 212 42 25 chrX 8734227 8734675 -168239465 + MLT2B1 LTR ERVL 1 456 -64 22 0 0 0 chrX 8734700 8734722 -168239418 + AT_rich Low_complexity Low_complexity 1 22 0 1264 228 141 9 chrX 8734723 8735222 -168238918 - MLT1E1 LTR MaLR -38 616 5 194 139 47 0 chrX 8735705 8735748 -168238392 + CT-rich Low_complexity Low_complexity 2 46 0 732 205 0 0 chrX 8735748 8735875 -168238265 - FRAM SINE Alu -46 130 4 660 209 209 0 chrX 8736081 8736234 -168237906 + MER5A DNA MER1_type 2 186 -3 1376 161 169 0 chrX 8736238 8736499 -168237641 - AluSx SINE Alu -7 305 1 5954 141 66 47 chrX 8736633 8737884 -168236256 - MER41-int LTR ERV1 -867 5079 3805 * 6659 104 58 36 chrX 8737883 8738136 -168236004 - MER41-int LTR ERV1 -1802 3078 2832 2211 94 3 14 chrX 8738136 8738423 -168235717 + AluSp SINE Alu 2 285 -28 423 0 0 0 chrX 8738423 8738470 -168235670 + (CA)n Simple_repeat Simple_repeat 2 48 0 6659 104 58 36 chrX 8738470 8738942 -168235198 - MER41-int LTR ERV1 -2048 2832 2315 2186 85 41 0 chrX 8738942 8739232 -168234908 - AluSg SINE Alu 0 301 1 6659 104 58 36 chrX 8739232 8739638 -168234502 - MER41-int LTR ERV1 -2565 2315 1919 1628 147 102 30 chrX 8739640 8740001 -168234139 - LTR8A LTR ERV1 -340 387 1 284 114 0 65 chrX 8740304 8740350 -168233790 - MIR SINE MIR -50 158 115 786 254 33 12 chrX 8740504 8740748 -168233392 + L1MB7 LINE L1 5926 6174 -10 2017 114 40 17 chrX 8742867 8743194 -168230946 + AluSx SINE Alu 1 312 0 2316 102 0 0 chrX 8743239 8743542 -168230598 + AluSx SINE Alu 1 303 -9 23 0 0 0 chrX 8744183 8744206 -168229934 + AT_rich Low_complexity Low_complexity 1 23 0 2346 85 17 0 chrX 8745483 8745776 -168228364 - AluY SINE Alu -13 298 1 1343 166 64 88 chrX 8745821 8746116 -168228024 + AluJo SINE Alu 1 288 -24 2188 126 3 0 chrX 8747469 8747770 -168226370 + AluSq SINE Alu 1 302 -11 1866 117 69 7 chrX 8747848 8748138 -168226002 + AluSx SINE Alu 1 308 -4 1042 87 37 6 chrX 8748138 8748293 -168225847 + L1MA2 LINE L1 6141 6300 -4 343 271 78 36 chrX 8748587 8748793 -168225347 + L1ME1 LINE L1 5960 6162 -4 2151 103 27 0 chrX 8748940 8749241 -168224899 + AluSx SINE Alu 1 309 -3 1314 169 4 30 chrX 8749294 8749525 -168224615 + AluJo SINE Alu 12 236 -76 183 100 0 0 chrX 8749639 8749669 -168224471 + (TA)n Simple_repeat Simple_repeat 1 30 0 271 266 73 32 chrX 8749670 8749804 -168224336 - MIR3 SINE MIR -54 154 22 286 155 14 113 chrX 8750009 8750080 -168224060 - MER20 DNA MER1_type -154 65 2 25 0 0 0 chrX 8753120 8753145 -168220995 + GC_rich Low_complexity Low_complexity 1 25 0 34 65 0 0 chrX 8753201 8753263 -168220877 + GC_rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chrX 8753324 8753348 -168220792 + GC_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chrX 8753395 8753420 -168220720 + (CGG)n Simple_repeat Simple_repeat 3 27 0 2390 74 13 10 chrX 8754622 8754933 -168219207 - AluSx SINE Alu 0 312 1 1478 218 69 21 chrX 8756260 8756678 -168217462 + L1MC2 LINE L1 4832 5269 -877 507 111 14 0 chrX 8756704 8756776 -168217364 + AluJ SINE Alu 213 285 -27 339 25 0 0 chrX 8756788 8756828 -168217312 + (TG)n Simple_repeat Simple_repeat 2 41 0 234 229 0 0 chrX 8756828 8756884 -168217256 + L1MC4 LINE L1 6654 6709 -1333 * 5235 168 31 28 chrX 8756866 8757942 -168216198 + L1MC2 LINE L1 5266 6344 0 1986 155 0 37 chrX 8757953 8758276 -168215864 + AluJo SINE Alu 2 312 0 2295 96 3 0 chrX 8758534 8758827 -168215313 - AluSx SINE Alu -18 294 1 2042 138 97 17 chrX 8759587 8759948 -168214192 + MLT1B LTR MaLR 1 390 0 2023 142 13 0 chrX 8760140 8760443 -168213697 + AluJb SINE Alu 1 307 -5 556 189 34 92 chrX 8760528 8760734 -168213406 - Charlie4a DNA MER1_type -71 437 244 1282 143 5 24 chrX 8760793 8760970 -168213170 - AluJb SINE Alu -2 310 131 396 40 0 0 chrX 8760970 8761020 -168213120 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2173 91 0 11 chrX 8761020 8761307 -168212833 - AluSx SINE Alu -28 284 1 1282 143 5 24 chrX 8761307 8761337 -168212803 - AluJb SINE Alu -179 133 106 464 146 10 10 chrX 8761346 8761449 -168212691 + MER96B DNA MER1_type? 69 171 -246 839 152 0 40 chrX 8761808 8761922 -168212218 - MLT1D LTR MaLR -4 501 393 1973 181 72 84 chrX 8761922 8762407 -168211733 + MLT2B1 LTR ERVL 2 482 -38 354 45 0 0 chrX 8762407 8762451 -168211689 + (TA)n Simple_repeat Simple_repeat 1 44 0 1973 181 72 84 chrX 8762451 8762490 -168211650 + MLT2B1 LTR ERVL 482 520 0 839 152 0 40 chrX 8762490 8762526 -168211614 - MLT1D LTR MaLR -112 393 357 1911 171 3 3 chrX 8762528 8762838 -168211302 + AluJo SINE Alu 1 310 -2 694 160 17 33 chrX 8762844 8763025 -168211115 + GA-rich Low_complexity Low_complexity 3 180 0 929 244 57 37 chrX 8763029 8763382 -168210758 - MLT1D LTR MaLR -145 360 1 1828 110 18 28 chrX 8763727 8764009 -168210131 + AluSx SINE Alu 21 299 -13 343 214 34 26 chrX 8764022 8764139 -168210001 - L1MA10 LINE L1 -7 6327 6210 2416 145 20 86 chrX 8764149 8764215 -168209925 - MLT1D LTR MaLR -1 504 435 615 197 354 36 chrX 8764215 8764318 -168209822 - AluJo SINE Alu -7 295 226 2390 99 0 6 chrX 8764318 8764632 -168209508 - AluSx SINE Alu 0 312 1 615 197 354 36 chrX 8764632 8764751 -168209389 - AluJo SINE Alu -76 226 2 2416 145 20 86 chrX 8764751 8764977 -168209163 - MLT1D LTR MaLR -70 435 260 1963 153 45 70 chrX 8764977 8765420 -168208720 + MSTB1 LTR MaLR 1 432 0 2416 145 20 86 chrX 8765420 8765664 -168208476 - MLT1D LTR MaLR -245 260 2 1884 223 35 68 chrX 8765665 8766270 -168207870 - L1ME1 LINE L1 -120 6046 5462 1664 197 14 0 chrX 8766321 8766605 -168207535 - AluJb SINE Alu -18 294 7 841 167 0 7 chrX 8766609 8766747 -168207393 - AluJo SINE Alu -175 137 1 512 190 51 118 chrX 8767416 8767611 -168206529 + L1M3 LINE L1 5449 5630 -550 300 140 0 0 chrX 8768346 8768396 -168205744 - 5S rRNA rRNA -70 51 2 253 200 0 0 chrX 8769390 8769440 -168204700 - 5S rRNA rRNA -70 51 2 277 180 0 0 chrX 8770321 8770371 -168203769 - 5S rRNA rRNA -70 51 2 289 180 0 0 chrX 8771253 8771303 -168202837 - 5S rRNA rRNA -70 51 2 268 200 0 0 chrX 8772183 8772233 -168201907 - 5S rRNA rRNA -70 51 2 300 140 0 0 chrX 8773115 8773165 -168200975 - 5S rRNA rRNA -70 51 2 284 198 0 172 chrX 8774093 8774209 -168199931 - 5S rRNA rRNA -24 97 2 309 180 0 0 chrX 8776079 8776129 -168198011 + 5S rRNA rRNA 2 51 -70 330 181 0 172 chrX 8777011 8777127 -168197013 + 5S rRNA rRNA 2 97 -24 321 160 0 0 chrX 8777942 8777992 -168196148 + 5S rRNA rRNA 2 51 -70 287 167 0 33 chrX 8779210 8779270 -168194870 - AluJo SINE Alu -159 143 86 1293 151 9 9 chrX 8779272 8779490 -168194650 - AluJo SINE Alu -94 218 1 2399 70 0 0 chrX 8779876 8780177 -168193963 - AluY SINE Alu -10 301 1 506 255 27 34 chrX 8781619 8781768 -168192372 + MIR SINE MIR 103 250 -12 232 292 0 14 chrX 8781882 8781954 -168192186 + GA-rich Low_complexity Low_complexity 1 71 0 836 168 0 7 chrX 8782112 8782255 -168191885 - FLAM_C SINE Alu 0 143 2 792 250 70 4 chrX 8782778 8783006 -168191134 + MER33 DNA MER1_type 35 277 -47 2508 51 0 3 chrX 8783014 8783326 -168190814 + AluY SINE Alu 1 311 0 1245 171 89 37 chrX 8783337 8783606 -168190534 + AluJb SINE Alu 1 283 -29 809 302 127 18 chrX 8783855 8784345 -168189795 + HAL1 LINE L1 1614 2156 -351 1656 189 3 0 chrX 8784349 8784646 -168189494 + AluJb SINE Alu 1 298 -14 1958 95 7 7 chrX 8784881 8785165 -168188975 + AluSq SINE Alu 19 302 -11 2227 64 3 32 chrX 8785238 8785550 -168188590 + AluY SINE Alu 1 303 -8 448 204 49 49 chrX 8786058 8786200 -168187940 - LTR33 LTR ERVL 0 521 380 436 226 13 0 chrX 8786268 8786360 -168187780 + MLT1I LTR MaLR 60 154 -266 2523 55 0 0 chrX 8786360 8786670 -168187470 - AluY SINE Alu -1 310 1 419 189 0 150 chrX 8787240 8787277 -168186863 + MER5B DNA MER1_type 30 71 -107 2172 77 14 7 chrX 8787277 8787574 -168186566 + AluSq SINE Alu 1 299 -14 419 189 0 150 chrX 8787574 8787663 -168186477 + MER5B DNA MER1_type 71 137 -41 1632 173 15 0 chrX 8787936 8788207 -168185933 + AluJo SINE Alu 1 275 -37 180 77 0 0 chrX 8788209 8788235 -168185905 + (TC)n Simple_repeat Simple_repeat 2 27 0 533 42 14 0 chrX 8788238 8788310 -168185830 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 27 0 0 0 chrX 8789683 8789710 -168184430 + AT_rich Low_complexity Low_complexity 1 27 0 358 307 48 96 chrX 8790294 8790697 -168183443 - L1MEc LINE L1 -2792 3423 2118 768 154 0 15 chrX 8790886 8791016 -168183124 + AluJo SINE Alu 12 139 -173 333 188 0 75 chrX 8791639 8791719 -168182421 - 5S rRNA rRNA -46 75 2 260 228 0 76 chrX 8792684 8792763 -168181377 - 5S rRNA rRNA -46 75 3 328 181 0 172 chrX 8793693 8793809 -168180331 - 5S rRNA rRNA -24 97 2 333 188 0 75 chrX 8794661 8794741 -168179399 - 5S rRNA rRNA -46 75 2 329 179 0 170 chrX 8795679 8795785 -168178355 - 5S rRNA rRNA -32 89 2 333 188 0 75 chrX 8796637 8796717 -168177423 - 5S rRNA rRNA -46 75 2 284 198 0 172 chrX 8797644 8797760 -168176380 - 5S rRNA rRNA -24 97 2 300 180 0 0 chrX 8798642 8798692 -168175448 - 5S rRNA rRNA -70 51 2 333 188 0 75 chrX 8799544 8799624 -168174516 - 5S rRNA rRNA -46 75 2 321 160 0 0 chrX 8800618 8800668 -168173472 - 5S rRNA rRNA -70 51 2 333 188 0 75 chrX 8801520 8801600 -168172540 - 5S rRNA rRNA -46 75 2 321 160 0 0 chrX 8802594 8802644 -168171496 - 5S rRNA rRNA -70 51 2 302 143 9 171 chrX 8803470 8803575 -168170565 - 5S rRNA rRNA -32 89 2 338 247 0 0 chrX 8803745 8803822 -168170318 - 5S rRNA rRNA -38 83 7 24 0 0 0 chrX 8805265 8805289 -168168851 + AT_rich Low_complexity Low_complexity 1 24 0 1709 141 3 50 chrX 8805289 8805457 -168168683 - 7SLRNA srpRNA srpRNA -16 304 130 360 0 0 0 chrX 8805457 8805497 -168168643 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 1996 125 0 0 chrX 8805498 8805795 -168168345 - AluSq SINE Alu -11 302 6 1709 141 3 50 chrX 8805795 8805923 -168168217 - 7SLRNA srpRNA srpRNA -189 131 20 561 294 61 5 chrX 8806063 8806277 -168167863 - L1MC/D LINE L1 -2040 5768 5543 1804 165 3 0 chrX 8806581 8806890 -168167250 - AluJo SINE Alu -2 310 1 1992 115 0 0 chrX 8806907 8807186 -168166954 - AluSq SINE Alu -28 285 7 279 270 0 0 chrX 8807287 8807350 -168166790 - MLT1K LTR MaLR 0 588 526 814 313 23 32 chrX 8807457 8807802 -168166338 - MLT1L LTR MaLR -149 466 125 1173 181 191 61 chrX 8807983 8808391 -168165749 - MLT1C LTR MaLR -1 466 6 224 329 161 7 chrX 8808398 8808535 -168165605 - MIR SINE MIR -102 160 3 231 191 0 0 chrX 8808608 8808650 -168165490 - L2 LINE L2 -4 3309 3268 2326 82 3 3 chrX 8808654 8808960 -168165180 - AluY SINE Alu -3 308 3 261 109 0 0 chrX 8808961 8809007 -168165133 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2195 87 0 0 chrX 8809007 8809295 -168164845 - AluSg1 SINE Alu -21 288 1 2347 35 3 0 chrX 8809617 8809924 -168164216 + AluY SINE Alu 1 308 0 1784 113 6 73 chrX 8810109 8810437 -168163703 + AluJo SINE Alu 1 306 -6 198 71 0 0 chrX 8810777 8810805 -168163335 + (TC)n Simple_repeat Simple_repeat 1 28 0 2346 213 82 53 chrX 8811050 8811467 -168162673 + L1MD2 LINE L1 5620 6068 -291 2199 75 0 0 chrX 8811467 8811747 -168162393 - AluSx SINE Alu -6 306 27 2346 213 82 53 chrX 8811747 8812046 -168162094 + L1MD2 LINE L1 6068 6357 -2 1987 114 3 10 chrX 8812135 8812433 -168161707 + AluSq SINE Alu 1 296 -17 1600 163 48 3 chrX 8812551 8812845 -168161295 + AluJb SINE Alu 1 307 -5 1858 145 3 13 chrX 8813518 8813821 -168160319 + AluJo SINE Alu 7 306 -6 1239 197 5 5 chrX 8813852 8814075 -168160065 + MER58A DNA MER1_type 2 224 0 1557 147 9 69 chrX 8814224 8814400 -168159740 - AluJo SINE Alu -12 300 150 2294 79 0 0 chrX 8814400 8814690 -168159450 - AluSx SINE Alu -22 290 1 1557 147 9 69 chrX 8814690 8814832 -168159308 - AluJo SINE Alu -162 150 1 271 343 133 14 chrX 8814921 8815131 -168159009 + MIR SINE MIR 2 236 -26 1014 159 0 0 chrX 8815478 8815641 -168158499 - AluJb SINE Alu -12 300 138 3051 188 46 2 chrX 8815810 8816416 -168157724 - L1MB5 LINE L1 -1 6173 5541 1671 177 81 0 chrX 8816553 8816863 -168157277 - MER7A DNA MER2_type 0 346 14 554 286 108 52 chrX 8816955 8817186 -168156954 + L2 LINE L2 3029 3272 0 631 130 0 0 chrX 8817497 8817589 -168156551 + AluJ/FLAM SINE Alu 1 92 -220 1997 248 72 19 chrX 8817706 8818355 -168155785 + L1ME2 LINE L1 5426 6109 -55 812 196 0 0 chrX 8818357 8818490 -168155650 - AluJb SINE Alu -178 134 2 26 0 0 49 chrX 8818540 8818555 -168155585 + AT_rich Low_complexity Low_complexity 1 15 -24 2246 107 0 0 chrX 8818555 8818864 -168155276 - AluSx SINE Alu -3 309 1 26 0 0 49 chrX 8818864 8818889 -168155251 + AT_rich Low_complexity Low_complexity 15 39 0 649 269 12 6 chrX 8818975 8819135 -168155005 - MLT1H LTR MaLR -3 546 386 1704 219 28 0 chrX 8820666 8821022 -168153118 - LTR16C LTR ERVL 0 491 126 286 293 13 0 chrX 8821238 8821313 -168152827 - MER45C DNA AcHobo 0 953 878 249 197 13 145 chrX 8821319 8821395 -168152745 - MER45C DNA AcHobo -441 512 447 1149 198 116 79 chrX 8821558 8821772 -168152368 - MER58B DNA MER1_type -2079 341 109 1802 141 3 14 chrX 8821772 8822063 -168152077 + AluJb SINE Alu 1 288 -24 1149 198 116 79 chrX 8822063 8822177 -168151963 - MER58B DNA MER1_type -2311 109 1 1118 254 58 96 chrX 8822667 8822829 -168151311 - MLT1J LTR MaLR -12 499 332 2492 35 0 6 chrX 8822829 8823141 -168150999 - AluY SINE Alu -1 310 1 1118 254 58 96 chrX 8823141 8823268 -168150872 - MLT1J LTR MaLR -179 332 202 1572 215 43 27 chrX 8823268 8823636 -168150504 + MLT1A2 LTR MaLR 1 374 0 1118 254 58 96 chrX 8823636 8823808 -168150332 - MLT1J LTR MaLR -309 202 55 962 204 9 23 chrX 8823808 8824028 -168150112 - MER20 DNA MER1_type -2 217 1 1118 254 58 96 chrX 8824028 8824063 -168150077 - MLT1J LTR MaLR -456 55 20 581 312 46 9 chrX 8824144 8824362 -168149778 + LTR67 LTR ERVL 332 557 0 2264 82 3 17 chrX 8825536 8825830 -168148310 - AluSc SINE Alu -14 295 6 412 233 338 0 chrX 8825844 8825977 -168148163 - MER5A DNA MER1_type -11 178 1 1514 160 23 105 chrX 8826135 8826479 -168147661 - AluYb8 SINE Alu -2 316 1 323 288 0 0 chrX 8826891 8826964 -168147176 + L2 LINE L2 3196 3268 -4 952 203 18 53 chrX 8827000 8827227 -168146913 + MER20 DNA MER1_type 1 219 0 350 253 38 0 chrX 8827976 8828055 -168146085 - MIR SINE MIR -33 229 148 348 313 54 27 chrX 8828545 8828707 -168145433 - MIR SINE MIR -38 170 1 1512 207 105 41 chrX 8828775 8828833 -168145307 + MLT1F LTR MaLR 1 54 -488 1588 198 58 33 chrX 8828833 8829197 -168144943 + MLT1A2 LTR MaLR 2 374 0 1512 207 105 41 chrX 8829197 8829622 -168144518 + MLT1F LTR MaLR 54 515 -27 6629 83 11 2 chrX 8829623 8830692 -168143448 + L1PA14 LINE L1 5079 6160 -1 2829 109 26 9 chrX 8830999 8831420 -168142720 + MSTA LTR MaLR 1 428 0 872 173 0 0 chrX 8831931 8832070 -168142070 - AluJo SINE Alu -173 139 1 182 321 58 29 chrX 8832858 8832995 -168141145 - MIR SINE MIR -48 214 74 1753 163 33 3 chrX 8833010 8833310 -168140830 + AluJb SINE Alu 1 309 -3 190 393 0 0 chrX 8833526 8833582 -168140558 + L2 LINE L2 2998 3053 -219 478 246 99 47 chrX 8833754 8833925 -168140215 - L1ME3 LINE L1 -14 6148 5969 195 401 39 6 chrX 8834434 8834616 -168139524 + L2 LINE L2 2827 3014 -258 22 0 0 0 chrX 8834843 8834865 -168139275 + AT_rich Low_complexity Low_complexity 1 22 0 1956 148 7 13 chrX 8835082 8835249 -168138891 - AluSx SINE Alu -11 301 135 2221 118 0 0 chrX 8835249 8835633 -168138507 - AluSx SINE Alu 0 312 1 1956 148 7 13 chrX 8835633 8835768 -168138372 - AluSx SINE Alu -177 135 1 896 167 0 7 chrX 8835771 8835915 -168138225 - FLAM_C SINE Alu 0 143 1 219 257 69 109 chrX 8835990 8836091 -168138049 + L2 LINE L2 3160 3256 -16 2168 132 3 3 chrX 8836118 8836428 -168137712 + AluSx SINE Alu 1 310 -2 900 237 23 5 chrX 8837813 8838028 -168136112 - MER20 DNA MER1_type 0 219 1 1676 165 4 0 chrX 8838545 8838818 -168135322 - AluJo SINE Alu -1 311 38 2751 182 72 30 chrX 8839233 8839832 -168134308 - MLT1E3 LTR MaLR 0 624 1 375 350 36 0 chrX 8839995 8840135 -168134005 - L2 LINE L2 -5 3308 3164 1721 149 7 18 chrX 8840138 8840419 -168133721 - AluJo SINE Alu -11 301 24 201 214 48 0 chrX 8840554 8840596 -168133544 + (CCTA)n Simple_repeat Simple_repeat 3 46 0 2455 150 55 9 chrX 8840720 8841172 -168132968 - LTR29 LTR ERV1 -13 609 137 309 274 0 0 chrX 8841185 8841269 -168132871 - MER34 LTR ERV1 -458 84 1 1224 268 61 65 chrX 8841738 8842057 -168132083 + L1MC4 LINE L1 7243 7562 -480 2572 173 19 8 chrX 8842057 8842537 -168131603 + L1MB3 LINE L1 5689 6173 -10 1813 164 7 23 chrX 8842539 8842849 -168131291 - AluJo SINE Alu -7 305 1 1224 268 61 65 chrX 8842849 8842940 -168131200 + L1MC4 LINE L1 7563 7653 -389 2225 120 0 0 chrX 8842940 8843239 -168130901 + AluSx SINE Alu 1 299 -13 1224 268 61 65 chrX 8843239 8843484 -168130656 + L1MC4 LINE L1 7653 7899 -143 2384 97 0 0 chrX 8843601 8843899 -168130241 - AluSx SINE Alu -14 298 1 2185 126 0 0 chrX 8844340 8844634 -168129506 + AluJo SINE Alu 1 294 -18 635 336 63 41 chrX 8844638 8845151 -168128989 + L2 LINE L2 2748 3270 -2 1567 148 31 68 chrX 8845440 8845764 -168128376 - AluJo SINE Alu 0 312 1 2072 145 93 25 chrX 8845788 8846187 -168127953 - MSTB LTR MaLR 0 426 1 2501 93 0 0 chrX 8846244 8846554 -168127586 - AluSx SINE Alu -2 310 1 1805 147 0 64 chrX 8846965 8847277 -168126863 - AluJb SINE Alu -12 300 9 899 148 0 37 chrX 8847421 8847583 -168126557 + MER20 DNA MER1_type 27 182 -37 1764 104 0 0 chrX 8847583 8847803 -168126337 + AluSg/x SINE Alu 66 285 -27 369 0 0 0 chrX 8847803 8847844 -168126296 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chrX 8848147 8848168 -168125972 + AT_rich Low_complexity Low_complexity 1 21 0 1157 134 23 14 chrX 8848649 8848865 -168125275 - MER46B DNA MER2_type 0 236 19 1812 165 0 14 chrX 8848878 8849169 -168124971 - AluJo SINE Alu -25 287 1 1063 172 0 0 chrX 8849169 8849349 -168124791 - MER46B DNA MER2_type -181 55 1 1018 194 0 0 chrX 8849351 8849521 -168124619 - FRAM SINE Alu -7 169 1 2321 118 0 0 chrX 8850249 8850553 -168123587 - AluJb SINE Alu -8 304 1 186 133 0 0 chrX 8850908 8850938 -168123202 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 325 301 44 0 chrX 8851207 8851343 -168122797 - L1ME3A LINE L1 -27 6143 6002 352 294 162 15 chrX 8851744 8851880 -168122260 - MIR SINE MIR -67 195 40 2317 241 14 11 chrX 8852131 8852687 -168121453 + MER82 DNA MER2_type 3 560 -93 2234 112 0 0 chrX 8853483 8853787 -168120353 - AluSx SINE Alu -8 304 1 2453 99 0 3 chrX 8853907 8854220 -168119920 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 8855058 8855086 -168119054 + AT_rich Low_complexity Low_complexity 1 28 0 2567 69 3 0 chrX 8855912 8856217 -168117923 + AluSp SINE Alu 1 306 -7 180 290 191 25 chrX 8856246 8856408 -168117732 - MER5A DNA MER1_type 0 189 1 563 226 161 6 chrX 8856985 8857153 -168116987 + MER45C DNA AcHobo 74 267 -686 * 828 215 126 64 chrX 8857134 8857329 -168116811 + MER45C DNA AcHobo 606 830 -751 939 207 0 0 chrX 8857329 8857493 -168116647 + FRAM SINE Alu 1 164 -2 828 215 126 64 chrX 8857493 8857623 -168116517 + MER45C DNA AcHobo 830 951 -2 1113 140 48 34 chrX 8858477 8858684 -168115456 + MER20 DNA MER1_type 1 210 -9 510 325 0 0 chrX 8858980 8859131 -168115009 + MER5B DNA MER1_type 26 176 -2 1198 131 0 22 chrX 8859488 8859671 -168114469 - AluJ SINE Alu 0 312 134 2086 124 3 16 chrX 8859671 8859978 -168114162 - AluSx SINE Alu -9 303 1 855 249 9 0 chrX 8860010 8860223 -168113917 - MER20 DNA MER1_type -4 215 1 470 256 29 70 chrX 8860225 8860467 -168113673 - MER112 DNA MER1_type 0 260 29 333 229 156 0 chrX 8860593 8860689 -168113451 - L1MCa LINE L1 -4336 2090 1980 2161 130 0 0 chrX 8860690 8860989 -168113151 - AluSx SINE Alu -12 300 2 748 186 0 8 chrX 8861336 8861465 -168112675 - AluJ SINE Alu -174 128 1 2175 176 55 31 chrX 8861513 8861663 -168112477 - L1MB7 LINE L1 -16 6168 6023 2002 164 3 0 chrX 8861663 8861974 -168112166 + AluJb SINE Alu 1 312 0 2175 176 55 31 chrX 8861974 8862333 -168111807 - L1MB7 LINE L1 -161 6023 5647 1918 111 48 24 chrX 8862755 8863044 -168111096 + AluSc SINE Alu 1 296 -13 2292 119 0 0 chrX 8863054 8863356 -168110784 + AluSx SINE Alu 1 302 -10 1007 151 0 0 chrX 8863608 8863754 -168110386 - AluJb SINE Alu 0 312 167 356 296 17 34 chrX 8864033 8864212 -168109928 + L1ME4a LINE L1 5754 5929 -192 29 28 0 0 chrX 8864967 8865003 -168109137 + GC_rich Low_complexity Low_complexity 1 36 0 270 81 0 0 chrX 8865092 8865129 -168109011 + (GGGGA)n Simple_repeat Simple_repeat 1 37 0 374 219 13 32 chrX 8865233 8865558 -168108582 + G-rich Low_complexity Low_complexity 1 318 0 224 261 14 14 chrX 8865529 8865667 -168108473 + GA-rich Low_complexity Low_complexity 4 141 0 * 1494 189 105 6 chrX 8866865 8867199 -168106941 - MLT1B LTR MaLR -1 389 23 2018 29 4 12 chrX 8868225 8868465 -168105675 - AluY SINE Alu -1 310 73 366 294 144 76 chrX 8868952 8869306 -168104834 + MLT1K LTR MaLR 136 513 -75 869 95 20 7 chrX 8869309 8869457 -168104683 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 2355 88 13 0 chrX 8869555 8869860 -168104280 + AluSp SINE Alu 1 309 -4 189 0 0 0 chrX 8869873 8869894 -168104246 + (TA)n Simple_repeat Simple_repeat 1 21 0 384 288 65 7 chrX 8870189 8870342 -168103798 - L1ME3A LINE L1 -238 5932 5771 226 372 155 17 chrX 8870451 8870857 -168103283 + L2 LINE L2 1107 1568 -1746 313 319 22 44 chrX 8870980 8871115 -168103025 + L2 LINE L2 2596 2727 -587 1596 196 37 64 chrX 8871115 8871570 -168102570 - MLT1C LTR MaLR 0 467 25 234 307 26 44 chrX 8871580 8871694 -168102446 + L2 LINE L2 2712 2823 -491 611 91 0 0 chrX 8872490 8872578 -168101562 - L1MB4 LINE L1 0 6180 6093 2067 144 0 0 chrX 8872664 8872962 -168101178 + AluSx SINE Alu 1 298 -14 1037 171 12 0 chrX 8873011 8873175 -168100965 - AluJb SINE Alu -11 301 136 1927 180 0 0 chrX 8874338 8874643 -168099497 - AluSx SINE Alu -7 305 1 2288 131 0 0 chrX 8874918 8875230 -168098910 - AluSx SINE Alu 0 312 1 387 240 0 10 chrX 8875456 8875552 -168098588 + MER53 DNA DNA 23 117 -72 913 204 63 12 chrX 8875695 8875950 -168098190 + MER33 DNA MER1_type 57 324 0 652 246 138 0 chrX 8875949 8876144 -168097996 - MER58A DNA MER1_type -2 222 1 * 1015 170 0 0 chrX 8876536 8876701 -168097439 + FRAM SINE Alu 1 165 -1 842 157 0 0 chrX 8876868 8876989 -168097151 - FLAM_C SINE Alu -22 121 1 181 280 75 11 chrX 8877638 8877731 -168096409 - MIR SINE MIR 0 262 164 534 264 8 0 chrX 8878071 8878200 -168095940 + L1PB4 LINE L1 5951 6080 -76 468 270 137 63 chrX 8878549 8878711 -168095429 - L1MC4 LINE L1 -340 7702 7553 201 39 0 0 chrX 8878711 8878737 -168095403 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2007 125 4 0 chrX 8878737 8879016 -168095124 - AluJb SINE Alu -29 283 4 468 270 137 63 chrX 8879016 8879545 -168094595 - L1MC4 LINE L1 -488 7554 6959 300 53 0 0 chrX 8879609 8879647 -168094493 + (CA)n Simple_repeat Simple_repeat 2 39 0 232 269 32 11 chrX 8880047 8880140 -168094000 + (TG)n Simple_repeat Simple_repeat 2 96 0 1892 147 98 0 chrX 8880445 8880772 -168093368 - MLT1A1 LTR MaLR -4 361 3 227 213 131 0 chrX 8881509 8881570 -168092570 - MLT1I LTR MaLR 0 409 341 234 224 0 0 chrX 8881697 8881746 -168092394 - MLT1I LTR MaLR -276 133 85 180 0 0 0 chrX 8882080 8882100 -168092040 + (A)n Simple_repeat Simple_repeat 1 20 0 2352 109 0 0 chrX 8882102 8882413 -168091727 + AluSx SINE Alu 1 311 -1 307 160 0 0 chrX 8882775 8882825 -168091315 - MER58 DNA MER1_type -118 223 174 375 244 0 0 chrX 8883046 8883132 -168091008 - L1MC4a LINE L1 -251 7557 7472 2265 92 0 0 chrX 8883138 8883420 -168090720 + AluSx SINE Alu 1 282 -30 2390 75 0 31 chrX 8883422 8883740 -168090400 + AluY SINE Alu 1 308 -3 1714 148 40 7 chrX 8884637 8884935 -168089205 + AluJb SINE Alu 1 308 -4 2245 93 3 3 chrX 8885141 8885430 -168088710 - AluSx SINE Alu -23 289 1 2358 93 3 0 chrX 8885954 8886264 -168087876 - AluSx SINE Alu -1 311 1 615 187 0 19 chrX 8886743 8886850 -168087290 - MER44D DNA MER2_type -1 604 628 25 21 0 43 chrX 8886850 8886878 -168087262 + AT_rich Low_complexity Low_complexity 1 28 -17 2201 103 3 3 chrX 8886878 8887169 -168086971 + AluSx SINE Alu 1 291 -21 25 21 0 43 chrX 8887169 8887187 -168086953 + AT_rich Low_complexity Low_complexity 28 45 0 694 193 0 0 chrX 8887190 8887309 -168086831 - FLAM_C SINE Alu -12 121 3 3136 170 116 10 chrX 8887314 8887892 -168086248 - MER44D DNA MER2_type -66 639 1 815 204 13 13 chrX 8887926 8888083 -168086057 - FRAM SINE Alu -19 157 1 540 263 34 22 chrX 8888261 8888440 -168085700 + MER58A DNA MER1_type 26 206 -18 335 283 53 62 chrX 8888959 8889185 -168084955 + MLT1K LTR MaLR 357 580 -8 1241 112 0 12 chrX 8889910 8890079 -168084061 - AluJb SINE Alu -145 167 1 344 285 74 20 chrX 8890549 8890832 -168083308 - Zaphod DNA AcHobo 0 4031 388 320 0 0 24 chrX 8891050 8891091 -168083049 + (GA)n Simple_repeat Simple_repeat 2 41 0 2579 68 3 0 chrX 8891898 8892207 -168081933 + AluSp SINE Alu 1 310 -3 236 138 103 35 chrX 8892575 8892633 -168081507 + MLT1F1 LTR MaLR 477 538 -29 2668 39 0 7 chrX 8892729 8893035 -168081105 + AluY SINE Alu 1 304 -7 1990 109 0 81 chrX 8893060 8893380 -168080760 + AluSx SINE Alu 19 312 0 1813 169 0 42 chrX 8893590 8893897 -168080243 - AluJb SINE Alu -18 294 1 677 260 64 20 chrX 8894078 8894328 -168079812 - L1ME3A LINE L1 -278 5892 5632 287 186 17 0 chrX 8894340 8894399 -168079741 - L1ME3A LINE L1 -594 5568 5509 791 126 0 53 chrX 8894675 8894865 -168079275 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1543 180 8 8 chrX 8894895 8895162 -168078978 - AluJo SINE Alu -45 267 1 789 118 41 145 chrX 8895540 8895761 -168078379 - MER3 DNA MER1_type -7 202 5 283 405 8 0 chrX 8896526 8896657 -168077483 - L2 LINE L2 0 3272 3141 2798 210 29 0 chrX 8896863 8897407 -168076733 - MLT1F1 LTR MaLR -2 565 6 201 291 13 25 chrX 8897429 8897508 -168076632 + MIR SINE MIR 77 154 -108 965 168 0 0 chrX 8897513 8897668 -168076472 + FRAM SINE Alu 1 155 -21 1841 143 59 3 chrX 8897808 8898095 -168076045 + AluJb SINE Alu 1 303 -9 1927 140 6 32 chrX 8898229 8898544 -168075596 - AluSx SINE Alu -3 309 3 2321 65 0 14 chrX 8899773 8900064 -168074076 + AluY SINE Alu 12 298 -13 274 336 17 26 chrX 8900293 8900409 -168073731 + MIR3 SINE MIR 88 202 -6 267 54 0 0 chrX 8900848 8900885 -168073255 + (TG)n Simple_repeat Simple_repeat 2 38 0 1762 132 28 60 chrX 8901068 8901386 -168072754 + AluJb SINE Alu 1 308 -4 581 292 46 25 chrX 8901838 8902078 -168072062 + MIR SINE MIR 4 248 -14 631 112 11 0 chrX 8902703 8902792 -168071348 + AluJb SINE Alu 208 297 -15 1987 139 10 10 chrX 8902985 8903165 -168070975 - AluSx SINE Alu 0 463 284 240 35 0 0 chrX 8903165 8903194 -168070946 + (TTCTC)n Simple_repeat Simple_repeat 2 30 0 1987 139 10 10 chrX 8903194 8903476 -168070664 - AluSx SINE Alu -178 285 1 1830 209 70 27 chrX 8903901 8904418 -168069722 - MLT1F LTR MaLR 0 542 4 25 0 0 0 chrX 8905547 8905572 -168068568 + AT_rich Low_complexity Low_complexity 1 25 0 1072 234 38 62 chrX 8906483 8906804 -168067336 + L1MD2 LINE L1 5580 5885 -289 400 307 24 54 chrX 8906804 8906970 -168067170 - LTR16C LTR ERVL -277 214 54 443 252 56 0 chrX 8907025 8907168 -168066972 + HAL1 LINE L1 1123 1273 -1234 2037 106 10 36 chrX 8907378 8907681 -168066459 + AluSx SINE Alu 1 295 -17 1894 159 3 34 chrX 8907712 8908032 -168066108 + AluJb SINE Alu 3 312 0 1778 163 10 0 chrX 8908272 8908567 -168065573 - AluJo SINE Alu -14 298 1 197 336 37 37 chrX 8909585 8909692 -168064448 - MIR SINE MIR -136 126 20 215 156 0 22 chrX 8909795 8909840 -168064300 - MIR3 SINE MIR -54 154 111 1772 150 52 0 chrX 8909885 8910197 -168063943 + AluJb SINE Alu 1 326 0 1231 207 29 42 chrX 8910211 8910520 -168063620 - MER33 DNA MER1_type -3 321 17 2266 155 25 59 chrX 8911174 8911321 -168062819 - Tigger2a DNA MER2_type -2274 434 284 2059 133 0 7 chrX 8911321 8911623 -168062517 + AluJb SINE Alu 3 302 -10 2266 155 25 59 chrX 8911623 8911919 -168062221 - Tigger2a DNA MER2_type -2424 284 6 572 158 9 0 chrX 8912108 8912222 -168061918 + GA-rich Low_complexity Low_complexity 3 117 0 1750 172 30 0 chrX 8912537 8912872 -168061268 - AluJb SINE Alu 0 344 1 769 188 0 0 chrX 8912879 8913012 -168061128 - AluJb SINE Alu -178 134 2 331 273 56 28 chrX 8915350 8915493 -168058647 + (CATG)n Simple_repeat Simple_repeat 1 147 0 316 369 20 7 chrX 8915455 8915655 -168058485 + (CGTG)n Simple_repeat Simple_repeat 1 202 0 * 276 278 0 33 chrX 8916150 8916240 -168057900 + CT-rich Low_complexity Low_complexity 4 90 0 1672 174 3 17 chrX 8916427 8916721 -168057419 - AluJo SINE Alu -22 290 1 487 208 57 78 chrX 8917255 8917396 -168056744 + MER5A DNA MER1_type 2 139 -50 2122 145 0 0 chrX 8917396 8917706 -168056434 + AluJo SINE Alu 1 310 -2 487 208 57 78 chrX 8917706 8917756 -168056384 + MER5A DNA MER1_type 139 189 0 22 0 0 0 chrX 8919104 8919126 -168055014 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chrX 8919524 8919549 -168054591 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrX 8920456 8920484 -168053656 + AT_rich Low_complexity Low_complexity 1 28 0 2060 138 3 0 chrX 8920484 8920773 -168053367 - AluJo SINE Alu -22 290 1 387 283 10 0 chrX 8920778 8920877 -168053263 - MER58A DNA MER1_type -124 100 1 616 299 22 9 chrX 8921272 8921496 -168052644 + MLT1J2 LTR MaLR 1 227 -223 339 237 0 13 chrX 8921616 8921692 -168052448 - Tigger5 DNA MER2_type -1 2322 2248 578 193 379 0 chrX 8921694 8921834 -168052306 - Tigger5 DNA MER2_type -2130 193 1 35 54 0 0 chrX 8922555 8922611 -168051529 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chrX 8922679 8922708 -168051432 + AT_rich Low_complexity Low_complexity 1 29 0 1168 148 23 0 chrX 8923224 8923400 -168050740 - AluJ SINE Alu 0 312 133 444 89 38 0 chrX 8923400 8923479 -168050661 + (TA)n Simple_repeat Simple_repeat 2 83 0 817 176 0 0 chrX 8923479 8923604 -168050536 - AluJ SINE Alu -187 125 1 326 252 53 8 chrX 8923634 8923765 -168050375 + L2 LINE L2 2367 2503 -811 2200 120 3 7 chrX 8923900 8924201 -168049939 + AluSx SINE Alu 3 302 -10 433 241 188 0 chrX 8924610 8924743 -168049397 - MER5A DNA MER1_type -25 164 7 2541 176 12 16 chrX 8925123 8925607 -168048533 - L1MB5 LINE L1 -19 6155 5674 203 161 0 0 chrX 8926122 8926153 -168047987 + (TG)n Simple_repeat Simple_repeat 1 31 0 201 74 0 0 chrX 8926153 8926180 -168047960 + (CA)n Simple_repeat Simple_repeat 1 27 0 266 299 0 0 chrX 8927867 8927934 -168046206 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 2145 127 0 0 chrX 8929393 8929718 -168044422 - AluSx SINE Alu 0 312 2 191 287 0 46 chrX 8929772 8929859 -168044281 - L2 LINE L2 -319 2953 2871 1386 185 89 15 chrX 8930289 8930614 -168043526 + MLT1C LTR MaLR 4 352 -115 978 182 0 0 chrX 8930615 8930791 -168043349 + FRAM SINE Alu 1 176 0 739 172 0 22 chrX 8930837 8930971 -168043169 + MLT1C LTR MaLR 337 467 0 1580 149 29 40 chrX 8931317 8931592 -168042548 - AluJo SINE Alu -36 276 5 189 74 0 0 chrX 8932782 8932809 -168041331 + (TC)n Simple_repeat Simple_repeat 2 28 0 2032 102 18 7 chrX 8932809 8933083 -168041057 - AluSg SINE Alu -32 278 2 200 179 27 54 chrX 8933545 8933657 -168040483 + CT-rich Low_complexity Low_complexity 1 109 0 420 145 62 33 chrX 8933673 8934164 -168039976 + CT-rich Low_complexity Low_complexity 1 505 0 716 267 52 9 chrX 8934228 8934438 -168039702 - MER58A DNA MER1_type -5 219 1 267 226 50 0 chrX 8934492 8934582 -168039558 - MER5A DNA MER1_type -90 99 4 1806 136 15 0 chrX 8936291 8936564 -168037576 + L1PA15 LINE L1 5889 6165 0 845 90 14 14 chrX 8936676 8936820 -168037320 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 2279 107 3 0 chrX 8936824 8937122 -168037018 - AluSx SINE Alu -13 299 1 422 288 20 0 chrX 8937504 8937650 -168036490 + MER104 DNA Tc2 6 154 -26 338 178 55 0 chrX 8937844 8937917 -168036223 + MER5A DNA MER1_type 3 79 -110 209 295 189 18 chrX 8937988 8938205 -168035935 + L2 LINE L2 2228 2481 -833 466 291 179 22 chrX 8938712 8939031 -168035109 + L2 LINE L2 2897 3265 -7 24 32 0 0 chrX 8939181 8939212 -168034928 + AT_rich Low_complexity Low_complexity 1 31 0 773 154 32 0 chrX 8939217 8939340 -168034800 - FLAM_C SINE Alu -5 128 2 702 126 0 0 chrX 8939501 8939604 -168034536 - AluSg/x SINE Alu 0 310 208 864 201 34 0 chrX 8939849 8940028 -168034112 + MER20 DNA MER1_type 34 218 -1 1719 174 0 14 chrX 8940161 8940454 -168033686 - AluJb SINE Alu -12 300 12 2289 115 0 3 chrX 8941021 8941334 -168032806 + AluSx SINE Alu 1 312 0 1597 141 23 19 chrX 8941344 8941607 -168032533 + AluJo SINE Alu 43 306 -6 738 303 71 29 chrX 8941751 8942131 -168032009 + Charlie7 DNA MER1_type 294 689 -1923 3490 206 15 48 chrX 8942268 8942625 -168031515 - L1ME1 LINE L1 -4 6162 5795 1863 153 7 17 chrX 8942625 8942920 -168031220 - AluJo SINE Alu -20 292 1 3490 206 15 48 chrX 8942920 8943410 -168030730 - L1ME1 LINE L1 -371 5795 5343 276 232 40 111 chrX 8944358 8944556 -168029584 - L2 LINE L2 -12 3301 3118 2189 66 4 4 chrX 8945745 8946016 -168028124 + AluSq SINE Alu 36 306 -7 371 280 7 53 chrX 8946215 8946365 -168027775 + LTR16B LTR ERVL 1 143 -321 2597 222 1 39 chrX 8947227 8947876 -168026264 + L1M4 LINE L1 4421 5045 -1101 936 231 15 0 chrX 8948176 8948375 -168025765 + L1MC4a LINE L1 6647 6848 -960 411 289 131 41 chrX 8949683 8949980 -168024160 + L2 LINE L2 2791 3145 -168 1382 114 274 0 chrX 8949980 8950217 -168023923 - AluSx SINE Alu 0 302 1 411 289 131 41 chrX 8950217 8950390 -168023750 + L2 LINE L2 3145 3301 -12 1821 140 7 4 chrX 8950393 8950664 -168023476 + AluJo SINE Alu 24 295 -17 446 131 9 37 chrX 8950842 8950949 -168023191 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 224 264 11 55 chrX 8951311 8951402 -168022738 + CT-rich Low_complexity Low_complexity 4 90 0 200 179 0 0 chrX 8951539 8951578 -168022562 + MIR SINE MIR 116 154 -108 7081 194 53 77 chrX 8951759 8953799 -168020341 - L1MC4a LINE L1 0 7808 5817 743 256 39 62 chrX 8953857 8953896 -168020244 - L1ME3 LINE L1 0 6162 6124 1519 172 15 8 chrX 8953896 8954163 -168019977 - AluJb SINE Alu -43 269 1 743 256 39 62 chrX 8954163 8954431 -168019709 - L1ME3 LINE L1 -38 6124 5862 1258 276 131 16 chrX 8956315 8956742 -168017398 + MLT1G1 LTR MaLR 47 522 -73 252 0 0 0 chrX 8956965 8956993 -168017147 + (CA)n Simple_repeat Simple_repeat 2 29 0 2054 123 0 0 chrX 8957349 8957626 -168016514 + AluSx SINE Alu 1 277 -35 576 172 43 17 chrX 8958984 8959100 -168015040 - MER45A DNA AcHobo 0 178 60 1882 203 116 51 chrX 8959105 8959516 -168014624 - L1ME1 LINE L1 -222 5944 5482 2131 127 7 7 chrX 8959516 8959824 -168014316 - AluJb SINE Alu -4 308 1 1882 203 116 51 chrX 8959824 8959999 -168014141 - L1ME1 LINE L1 -684 5482 5320 1237 237 15 4 chrX 8959999 8960269 -168013871 + AluJo SINE Alu 38 310 -2 936 283 51 20 chrX 8960269 8960661 -168013479 - L1ME1 LINE L1 -832 5314 4911 2048 142 0 7 chrX 8960889 8961185 -168012955 + AluSx SINE Alu 1 294 -18 1728 121 118 7 chrX 8961298 8961570 -168012570 - AluJo SINE Alu -10 302 1 325 152 217 43 chrX 8962253 8962345 -168011795 - ORSL DNA AcHobo -7 268 161 22 0 0 0 chrX 8962437 8962459 -168011681 + AT_rich Low_complexity Low_complexity 1 22 0 235 259 26 17 chrX 8962459 8962575 -168011565 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 * 258 274 22 17 chrX 8962512 8962691 -168011449 + (TA)n Simple_repeat Simple_repeat 1 180 0 22 0 0 0 chrX 8962695 8962717 -168011423 + AT_rich Low_complexity Low_complexity 1 22 0 212 193 46 28 chrX 8962738 8962847 -168011293 + (TATAA)n Simple_repeat Simple_repeat 2 112 0 * 240 292 26 0 chrX 8962809 8962922 -168011218 + (TA)n Simple_repeat Simple_repeat 1 116 0 1848 268 37 54 chrX 8963499 8964414 -168009726 + L1M4 LINE L1 2671 3570 -2576 992 208 120 33 chrX 8964502 8964874 -168009266 + MLT1C LTR MaLR 13 432 -35 598 253 59 15 chrX 8964881 8965083 -168009057 - MIR SINE MIR -24 238 28 295 259 0 12 chrX 8966613 8966694 -168007446 - MER5A DNA MER1_type -84 105 26 956 122 0 10 chrX 8966823 8967007 -168007133 + AluJb SINE Alu 1 258 -54 860 133 0 0 chrX 8968101 8968221 -168005919 + FRAM SINE Alu 37 156 -20 21 36 0 0 chrX 8968232 8968260 -168005880 + AT_rich Low_complexity Low_complexity 1 28 0 975 139 0 6 chrX 8968260 8968418 -168005722 - L1MA5A LINE L1 -7 6290 6134 935 114 15 0 chrX 8969024 8969155 -168004985 - FLAM_C SINE Alu 0 133 1 186 43 0 0 chrX 8969217 8969240 -168004900 + (A)n Simple_repeat Simple_repeat 1 23 0 909 204 32 16 chrX 8969649 8969835 -168004305 + MER20 DNA MER1_type 31 219 0 481 267 50 22 chrX 8969835 8970015 -168004125 - L1MC4 LINE L1 -502 7540 7356 279 0 0 0 chrX 8970132 8970163 -168003977 + (CA)n Simple_repeat Simple_repeat 1 31 0 1808 136 72 0 chrX 8970879 8971171 -168002969 + AluSx SINE Alu 1 311 0 2553 196 10 6 chrX 8971630 8972131 -168002009 - L1MD3 LINE L1 -127 7868 7366 382 296 46 33 chrX 8972463 8972615 -168001525 - MIR SINE MIR -105 157 4 241 374 108 28 chrX 8973007 8973256 -168000884 - L2 LINE L2 -28 3244 2976 252 347 31 0 chrX 8974960 8975058 -167999082 - MIR3 SINE MIR 0 208 108 1647 184 16 29 chrX 8975130 8975446 -167998694 - AluJo SINE Alu 0 312 1 411 313 16 11 chrX 8976625 8976807 -167997333 - L1ME4a LINE L1 -213 5908 5726 965 174 43 22 chrX 8977228 8977412 -167996728 + MER20 DNA MER1_type 32 219 0 868 321 25 101 chrX 8977848 8977950 -167996190 + Tigger8 DNA MER2_type 2 110 -556 4186 33 0 0 chrX 8977950 8978409 -167995731 + L1PA6 LINE L1 5683 6141 -13 868 321 25 101 chrX 8978409 8979019 -167995121 + Tigger8 DNA MER2_type 110 660 -6 23 0 0 0 chrX 8980314 8980337 -167993803 + AT_rich Low_complexity Low_complexity 1 23 0 315 305 64 35 chrX 8981094 8981235 -167992905 + MIR3 SINE MIR 37 181 -27 767 233 7 0 chrX 8981318 8981468 -167992672 + MER5A DNA MER1_type 1 151 -38 1346 152 0 15 chrX 8981468 8981715 -167992425 + AluJb SINE Alu 84 327 0 4945 129 39 14 chrX 8981716 8982478 -167991662 + MER41-int LTR ERV1 2051 2831 -3115 467 319 24 24 chrX 8982528 8982738 -167991402 - LTR16B LTR ERVL -58 406 197 956 228 29 0 chrX 8982746 8982952 -167991188 + MER20 DNA MER1_type 8 219 0 2579 66 0 0 chrX 8984166 8984470 -167989670 - AluY SINE Alu -7 304 1 201 39 0 0 chrX 8984685 8984711 -167989429 + (CA)n Simple_repeat Simple_repeat 2 27 0 2418 262 67 39 chrX 8985965 8986023 -167988117 - HAL1b LINE L1 0 1348 1293 243 0 0 0 chrX 8986023 8986050 -167988090 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2418 262 67 39 chrX 8986050 8986978 -167987162 - HAL1b LINE L1 -55 1293 334 481 296 58 17 chrX 8987125 8987297 -167986843 - MIR SINE MIR -12 250 72 536 243 28 0 chrX 8987343 8987487 -167986653 + L1MD2 LINE L1 6212 6359 0 271 231 130 59 chrX 8987923 8988092 -167986048 - MLT1H LTR MaLR -274 275 95 530 306 45 25 chrX 8988240 8988439 -167985701 - MIR SINE MIR -14 248 46 27 0 0 0 chrX 8988479 8988506 -167985634 + AT_rich Low_complexity Low_complexity 1 27 0 551 221 0 10 chrX 8989141 8989245 -167984895 - MIR SINE MIR -154 108 6 722 217 39 78 chrX 8989283 8989513 -167984627 + MLT1E LTR MaLR 3 223 -370 484 243 5 19 chrX 8989515 8989701 -167984439 + MLT1F1 LTR MaLR 331 560 -7 198 245 0 38 chrX 8989841 8989894 -167984246 - MIR SINE MIR -133 75 25 1320 204 85 27 chrX 8990121 8990450 -167983690 - MLT1F LTR MaLR -2 540 193 3869 156 9 3 chrX 8991722 8992355 -167981785 - L1MB3 LINE L1 -3 6180 5544 2181 176 134 12 chrX 8992453 8992953 -167981187 - L1MB8 LINE L1 -15 6163 5603 1650 199 46 9 chrX 8992953 8993299 -167980841 + MLT1A1 LTR MaLR 1 359 -6 1786 174 7 20 chrX 8993305 8993654 -167980486 - L1MB8 LINE L1 -566 5608 5263 237 269 220 43 chrX 8993660 8993801 -167980339 - MIR SINE MIR -95 167 2 629 270 39 28 chrX 8994328 8994506 -167979634 - MER5A DNA MER1_type -6 183 4 1726 221 126 27 chrX 8994738 8995295 -167978845 + MLT1E3 LTR MaLR 8 619 -5 253 203 95 14 chrX 8995578 8995652 -167978488 - MLT1F LTR MaLR -574 80 1 2064 130 0 7 chrX 8996309 8996593 -167977547 - AluSx SINE Alu -30 282 1 243 302 47 9 chrX 8996870 8996976 -167977164 - L2 LINE L2 -7 3265 3156 1347 219 50 7 chrX 8997341 8997643 -167976497 + MER58B DNA MER1_type 9 323 -18 324 310 157 31 chrX 8998180 8998409 -167975731 - L2 LINE L2 0 3313 3056 2650 43 0 0 chrX 8999056 8999360 -167974780 - AluY SINE Alu -7 304 1 1564 104 0 5 chrX 8999439 8999651 -167974489 - AluSg/x SINE Alu -15 297 87 349 249 34 17 chrX 8999695 8999872 -167974268 + (TA)n Simple_repeat Simple_repeat 1 180 0 255 229 59 29 chrX 8999826 8999996 -167974144 + (TATATG)n Simple_repeat Simple_repeat 6 180 0 * 206 270 135 54 chrX 9000752 9000863 -167973277 + MER5B DNA MER1_type 30 149 -29 * 323 222 10 91 chrX 9000767 9000866 -167973274 - MER5B DNA MER1_type -61 117 27 209 132 0 53 chrX 9001474 9001512 -167972628 + L2 LINE L2 3219 3254 -18 1690 145 105 44 chrX 9001891 9002235 -167971905 + MLT1A1 LTR MaLR 1 365 0 368 269 171 16 chrX 9003097 9003342 -167970798 - L1ME4a LINE L1 -82 6039 5757 16145 112 14 17 chrX 9003489 9005879 -167968261 - Tigger1 DNA MER2_type -6 2412 30 781 236 22 6 chrX 9005996 9006174 -167967966 - MER5A DNA MER1_type 0 189 9 1745 136 16 63 chrX 9006380 9006697 -167967443 + AluJo SINE Alu 1 302 -10 2313 90 3 3 chrX 9007026 9007326 -167966814 - AluSc SINE Alu -9 300 1 190 0 32 32 chrX 9010051 9010082 -167964058 + (TA)n Simple_repeat Simple_repeat 2 32 0 195 42 0 0 chrX 9010740 9010764 -167963376 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 371 308 48 56 chrX 9012163 9012413 -167961727 - HERV16 LTR ERVL -4347 649 402 2201 72 58 3 chrX 9012815 9012980 -167961160 - AluSc SINE Alu -1 308 119 2768 60 12 0 chrX 9012980 9013314 -167960826 - L1PA7 LINE L1 0 6154 5817 2201 72 58 3 chrX 9013314 9013440 -167960700 - AluSc SINE Alu -190 119 1 1629 168 43 16 chrX 9013947 9014251 -167959889 + AluJo SINE Alu 1 312 0 315 222 32 79 chrX 9014305 9014431 -167959709 - L1ME3A LINE L1 -89 6081 5962 1165 208 99 70 chrX 9014508 9014993 -167959147 - L1MC5 LINE L1 -420 7541 7043 470 255 20 7 chrX 9015097 9015246 -167958894 + HAL1 LINE L1 2285 2435 -72 23 0 0 0 chrX 9015283 9015306 -167958834 + AT_rich Low_complexity Low_complexity 1 23 0 322 302 12 0 chrX 9015985 9016071 -167958069 + CT-rich Low_complexity Low_complexity 1 87 0 545 324 152 19 chrX 9116596 9117183 -167856957 - L3 LINE CR1 -149 1428 764 241 381 21 21 chrX 9117266 9117363 -167856777 - L3 LINE CR1 -1044 533 437 503 286 13 39 chrX 9117364 9117518 -167856622 - MIR3 SINE MIR -10 198 49 2081 173 7 31 chrX 9117668 9118089 -167856051 + L1MB7 LINE L1 5751 6161 -23 333 57 63 88 chrX 9119026 9119185 -167854955 + (CACAA)n Simple_repeat Simple_repeat 5 159 0 216 178 44 50 chrX 9119219 9119399 -167854741 + (CACAA)n Simple_repeat Simple_repeat 1 179 0 * 266 106 113 6 chrX 9119371 9119531 -167854609 + (CA)n Simple_repeat Simple_repeat 2 178 0 405 86 63 40 chrX 9119575 9119750 -167854390 + (CA)n Simple_repeat Simple_repeat 1 179 0 330 143 0 0 chrX 9119777 9119840 -167854300 + (TC)n Simple_repeat Simple_repeat 1 63 0 318 341 0 0 chrX 9120680 9120771 -167853369 - L1MC4 LINE L1 -1339 6703 6613 400 324 116 0 chrX 9121619 9121792 -167852348 + MIR SINE MIR 50 242 -20 1039 89 6 22 chrX 9121975 9122055 -167852085 + (GGAA)n Simple_repeat Simple_repeat 1 254 0 1039 89 6 22 chrX 9122055 9122234 -167851906 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 249 109 0 87 chrX 9122547 9122593 -167851547 + L2 LINE L2 3272 3313 0 2307 88 3 0 chrX 9122986 9123283 -167850857 - AluSp SINE Alu -15 298 1 302 314 52 83 chrX 9123413 9123642 -167850498 + HAL1 LINE L1 2226 2447 -60 203 196 28 122 chrX 9123734 9123841 -167850299 - MER5A DNA MER1_type -86 103 7 363 250 94 16 chrX 9125530 9125658 -167848482 - MER103 DNA DNA -6 160 23 1393 155 0 0 chrX 9125673 9125899 -167848241 - AluJo SINE Alu 0 312 87 456 188 143 9 chrX 9126974 9127086 -167847054 + L1MB3 LINE L1 5739 5865 -318 5526 113 19 2 chrX 9127654 9128459 -167845681 - L1PA13 LINE L1 0 6163 5346 329 157 84 36 chrX 9229523 9229606 -167744534 - L1MB3 LINE L1 -1 6182 6096 3082 128 49 16 chrX 9229706 9230039 -167744101 + L1MB1 LINE L1 5158 5525 -809 2101 121 0 0 chrX 9230039 9230353 -167743787 + AluSx SINE Alu 1 314 0 3082 128 49 16 chrX 9230353 9230624 -167743516 + L1MB1 LINE L1 5525 5786 -548 850 125 0 0 chrX 9230628 9230748 -167743392 - AluSg/x SINE Alu -41 271 152 1651 180 23 0 chrX 9230748 9231048 -167743092 + L1MB1 LINE L1 5789 6095 -73 868 148 15 103 chrX 9231621 9231827 -167742313 - L1MD2 LINE L1 -143 6021 5826 2621 151 39 2 chrX 9231943 9232354 -167741786 - MSTB LTR MaLR 0 426 1 463 101 14 0 chrX 9232621 9232690 -167741450 - THE1B LTR MaLR 0 364 295 1840 163 0 23 chrX 9232863 9233170 -167740970 - AluJb SINE Alu -12 300 1 344 206 62 10 chrX 9233179 9233276 -167740864 + MER5C DNA MER1_type 212 313 -11 24 0 0 0 chrX 9233566 9233590 -167740550 + AT_rich Low_complexity Low_complexity 1 24 0 3348 139 27 11 chrX 9233590 9234144 -167739996 - L1PB4 LINE L1 -8 6148 5586 2137 126 3 28 chrX 9234362 9234680 -167739460 - AluJb SINE Alu -2 310 1 1192 195 0 14 chrX 9236709 9236924 -167737216 - MLT1E LTR MaLR -2 591 380 234 0 0 0 chrX 9237326 9237352 -167736788 + (A)n Simple_repeat Simple_repeat 1 26 0 216 152 22 43 chrX 9237700 9237746 -167736394 + CT-rich Low_complexity Low_complexity 1 45 0 242 277 40 30 chrX 9238051 9238152 -167735988 + Charlie7 DNA MER1_type 2511 2612 0 1079 250 101 22 chrX 9238288 9238604 -167735536 + MLT1E LTR MaLR 15 355 -238 230 224 45 0 chrX 9240163 9240230 -167733910 - L1MCa LINE L1 -4362 2064 1995 213 216 0 0 chrX 9240230 9240267 -167733873 + (CATA)n Simple_repeat Simple_repeat 2 38 0 311 269 0 43 chrX 9240268 9240361 -167733779 - L1MC4 LINE L1 -1339 6703 6615 426 176 0 0 chrX 9240370 9240455 -167733685 + (TA)n Simple_repeat Simple_repeat 1 85 0 1165 144 26 0 chrX 9240742 9240760 -167733380 - L1MB7 LINE L1 -241 5943 5926 345 322 75 13 chrX 9240760 9240987 -167733153 - L1PB2 LINE L1 -226 5925 5685 306 231 0 0 chrX 9240992 9241083 -167733057 + (TG)n Simple_repeat Simple_repeat 2 92 0 707 236 66 33 chrX 9241332 9241544 -167732596 + MER20 DNA MER1_type 1 219 0 506 160 0 40 chrX 9243769 9243869 -167730271 - L1 LINE L1 -1163 4983 4888 21 36 0 0 chrX 9244575 9244603 -167729537 + AT_rich Low_complexity Low_complexity 1 28 0 201 39 0 0 chrX 9245320 9245346 -167728794 + (CAA)n Simple_repeat Simple_repeat 2 27 0 459 0 0 0 chrX 9246679 9246730 -167727410 + (TC)n Simple_repeat Simple_repeat 1 51 0 2378 97 3 6 chrX 9247685 9247996 -167726144 + AluSx SINE Alu 3 312 0 2228 106 0 26 chrX 9248669 9248980 -167725160 + AluSx SINE Alu 1 303 -9 1350 157 0 9 chrX 9249955 9250172 -167723968 - L1PA15 LINE L1 -2 6163 5949 621 326 6 0 chrX 9250568 9250746 -167723394 + MER8 DNA MER2_type 1 179 -60 248 227 0 0 chrX 9250721 9250765 -167723375 + MER2 DNA MER2_type 282 325 -20 * 1385 176 24 0 chrX 9250943 9251193 -167722947 - Tigger3(Golem) DNA MER2_type -2 3027 2772 559 229 84 0 chrX 9251191 9251322 -167722818 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 279 274 9 101 chrX 9251551 9251587 -167722553 + L2 LINE L2 3111 3149 -164 2379 219 41 2 chrX 9251587 9252071 -167722069 + MLT1D LTR MaLR 3 505 0 279 274 9 101 chrX 9252071 9252253 -167721887 + L2 LINE L2 3149 3309 -4 1955 164 0 6 chrX 9252407 9252719 -167721421 - AluJo SINE Alu -2 310 1 321 68 0 0 chrX 9253313 9253357 -167720783 + (TC)n Simple_repeat Simple_repeat 1 44 0 1297 35 0 12 chrX 9253357 9253526 -167720614 + (TTC)n Simple_repeat Simple_repeat 1 167 0 217 369 0 0 chrX 9253895 9253960 -167720180 - L2 LINE L2 -1 3271 3207 222 313 30 0 chrX 9254621 9254688 -167719452 - MIR3 SINE MIR -54 154 86 1580 177 38 13 chrX 9254734 9255050 -167719090 + MER33 DNA MER1_type 1 324 0 258 81 0 0 chrX 9255106 9255143 -167718997 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 392 302 0 0 chrX 9255813 9255919 -167718221 + MER5A DNA MER1_type 4 109 -80 25 0 0 0 chrX 9256330 9256355 -167717785 + AT_rich Low_complexity Low_complexity 1 25 0 445 115 16 0 chrX 9256841 9256902 -167717238 + AluS SINE Alu 2 63 -247 219 36 0 0 chrX 9257032 9257060 -167717080 + (CCAA)n Simple_repeat Simple_repeat 4 31 0 394 239 43 34 chrX 9257065 9257182 -167716958 - MIR3 SINE MIR -79 129 12 249 139 0 0 chrX 9257758 9257801 -167716339 + (A)n Simple_repeat Simple_repeat 1 43 0 1983 99 13 40 chrX 9257802 9258104 -167716036 + L1PA16 LINE L1 5871 6164 -2 1677 172 0 7 chrX 9258693 9258984 -167715156 + AluSx SINE Alu 1 289 -23 2231 185 70 8 chrX 9259014 9259135 -167715005 - L1MA8 LINE L1 -3 6288 6176 252 0 0 0 chrX 9259135 9259163 -167714977 + (TG)n Simple_repeat Simple_repeat 1 28 0 2231 185 70 8 chrX 9259163 9259527 -167714613 - L1MA8 LINE L1 -115 6176 5773 414 311 152 7 chrX 9259823 9260093 -167714047 - L1ME3 LINE L1 -42 6120 5812 905 210 27 0 chrX 9261125 9261311 -167712829 + MER20 DNA MER1_type 29 219 0 2030 127 19 6 chrX 9261565 9261879 -167712261 + L1MA10 LINE L1 6016 6333 -1 205 333 28 0 chrX 9262616 9262688 -167711452 - L3 LINE CR1 -2 1575 1502 579 252 224 29 chrX 9262943 9263256 -167710884 - MLT1K LTR MaLR -19 569 196 2260 110 0 16 chrX 9264034 9264343 -167709797 + AluSx SINE Alu 1 304 -8 1140 196 33 9 chrX 9264673 9264887 -167709253 + MER20 DNA MER1_type 1 219 0 341 115 0 9 chrX 9265091 9265155 -167708985 - Alu SINE Alu -254 46 1 608 243 7 0 chrX 9266033 9266177 -167707963 + Tigger6a DNA MER2_type 397 541 -542 509 265 27 7 chrX 9266187 9266334 -167707806 - MER45R DNA AcHobo -1014 567 418 431 272 44 9 chrX 9266868 9266982 -167707158 - L2 LINE L2 -10 3303 3186 191 261 0 0 chrX 9267155 9267201 -167706939 + L2 LINE L2 2302 2347 -967 708 211 96 58 chrX 9267201 9267442 -167706698 + L1ME3A LINE L1 5856 6116 -54 882 221 118 11 chrX 9267445 9267707 -167706433 - L1ME3A LINE L1 -5 6165 5876 420 198 117 0 chrX 9267809 9267920 -167706220 - L1ME3A LINE L1 -585 5581 5458 876 361 102 24 chrX 9268206 9269440 -167704700 - L2 LINE L2 -210 3062 1731 411 272 53 0 chrX 9270117 9270231 -167703909 + L2 LINE L2 3193 3312 -1 2191 107 7 0 chrX 9270932 9271222 -167702918 + AluSq SINE Alu 2 293 -20 1858 164 52 30 chrX 9271805 9272130 -167702010 + THE1C LTR MaLR 1 336 -39 2041 105 0 0 chrX 9272130 9272396 -167701744 - AluSq SINE Alu -47 266 1 1858 164 52 30 chrX 9272396 9272437 -167701703 + THE1C LTR MaLR 336 375 0 1007 233 57 28 chrX 9273091 9273443 -167700697 - L1M4 LINE L1 -3145 3001 2640 3259 22 0 0 chrX 9274090 9274455 -167699685 + L1P2 LINE L1 5407 5771 -383 2084 115 7 3 chrX 9274851 9275138 -167699002 - AluSx SINE Alu -24 288 1 256 337 11 80 chrX 9275358 9275545 -167698595 + L2 LINE L2 2992 3165 -107 480 259 22 43 chrX 9275561 9275700 -167698440 + MIR SINE MIR 2 137 -125 1669 211 14 6 chrX 9276090 9276451 -167697689 + L1MB8 LINE L1 5813 6176 -2 1617 98 10 0 chrX 9276463 9276667 -167697473 + AluSq SINE Alu 1 206 -107 360 119 0 0 chrX 9276668 9276727 -167697413 + AluSq SINE Alu 244 302 0 23 0 0 0 chrX 9276871 9276894 -167697246 + AT_rich Low_complexity Low_complexity 1 23 0 2309 164 11 11 chrX 9276899 9277264 -167696876 + MLT1A1 LTR MaLR 1 365 0 190 264 230 43 chrX 9277358 9277572 -167696568 + L2 LINE L2 1985 2248 -1066 333 0 0 0 chrX 9277572 9277609 -167696531 + (CA)n Simple_repeat Simple_repeat 2 38 0 190 264 230 43 chrX 9277609 9277629 -167696511 + L2 LINE L2 2248 2263 -1051 262 365 54 40 chrX 9277812 9278034 -167696106 + L2 LINE L2 2543 2767 -547 388 360 54 30 chrX 9278205 9278502 -167695638 + L2 LINE L2 2969 3272 0 26 30 0 0 chrX 9279041 9279074 -167695066 + AT_rich Low_complexity Low_complexity 1 33 0 229 211 53 18 chrX 9279417 9279474 -167694666 - MLT1L LTR MaLR -50 565 507 2037 101 10 24 chrX 9280595 9280892 -167693248 - AluSq SINE Alu -16 297 5 1811 165 0 4 chrX 9281123 9281402 -167692738 + AluJb SINE Alu 1 278 -34 982 114 6 6 chrX 9281405 9281571 -167692569 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 750 288 10 0 chrX 9282364 9282569 -167691571 - MLT1E3 LTR MaLR 0 624 418 358 203 75 60 chrX 9282670 9282755 -167691385 - MLT1E1 LTR MaLR -354 300 211 2692 154 7 0 chrX 9282755 9283178 -167690962 + MSTC LTR MaLR 3 428 0 358 203 75 60 chrX 9283178 9283225 -167690915 - MLT1E1 LTR MaLR -443 211 166 * 625 230 0 0 chrX 9283211 9283337 -167690803 - MLT1E1 LTR MaLR -521 133 8 232 130 56 0 chrX 9283602 9283656 -167690484 + GA-rich Low_complexity Low_complexity 3 59 0 3426 130 5 0 chrX 9283685 9284298 -167689842 + L1PA16 LINE L1 5431 6160 -6 237 255 62 125 chrX 9284338 9284546 -167689594 - L2 LINE L2 0 3313 3119 426 221 215 0 chrX 9285130 9285288 -167688852 + L1MC2 LINE L1 6140 6331 -13 261 124 93 0 chrX 9285548 9285677 -167688463 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 3544 65 9 0 chrX 9285722 9286182 -167687958 - L1PA13 LINE L1 -4 6159 5696 253 275 81 47 chrX 9286231 9286489 -167687651 - L1M4 LINE L1 -1353 4793 4527 2401 60 0 0 chrX 9286539 9286854 -167687286 - AluY SINE Alu 0 315 1 1163 226 141 19 chrX 9286883 9287357 -167686783 - L1ME1 LINE L1 -18 6148 5617 388 289 58 5 chrX 9287383 9287591 -167686549 - L1M4 LINE L1 -1693 4453 4235 402 314 114 68 chrX 9288630 9289041 -167685099 - L1MEd LINE L1 -5674 445 16 602 124 0 0 chrX 9289905 9289994 -167684146 - AluSg/x SINE Alu -18 292 204 818 241 169 16 chrX 9290978 9291285 -167682855 - MLT1E LTR MaLR 0 593 240 273 250 0 0 chrX 9291485 9291549 -167682591 - HsTC2 DNA Tc2 -1798 100 37 795 143 0 7 chrX 9291605 9291745 -167682395 - L1MB8 LINE L1 -18 6160 6022 219 150 0 0 chrX 9291745 9291785 -167682355 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 512 15 0 0 chrX 9292225 9292290 -167681850 + L1PA4 LINE L1 6091 6155 0 2239 144 45 13 chrX 9292319 9292716 -167681424 + MSTB LTR MaLR 1 410 -16 295 291 100 0 chrX 9292999 9293109 -167681031 - MER103 DNA DNA -44 122 2 363 271 26 46 chrX 9293207 9293358 -167680782 - L3 LINE CR1 -627 950 803 187 360 142 41 chrX 9293538 9293955 -167680185 - L3 LINE CR1 -930 647 189 1105 241 78 74 chrX 9294231 9294771 -167679369 + MLT1E LTR MaLR 52 593 0 251 188 0 0 chrX 9297509 9297557 -167676583 + L2 LINE L2 2769 2816 -498 1661 253 132 11 chrX 9297563 9298092 -167676048 + MLT1E LTR MaLR 1 593 0 442 291 20 92 chrX 9298165 9298512 -167675628 + L2 LINE L2 2991 3312 -1 248 180 66 0 chrX 9298630 9298691 -167675449 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 465 338 49 13 chrX 9299836 9300061 -167674079 - MIR SINE MIR -10 252 20 329 241 110 97 chrX 9300061 9300289 -167673851 - HAL1 LINE L1 -2 2505 2275 271 318 11 0 chrX 9300300 9300388 -167673752 + MER63A DNA MER1_type 95 183 -27 542 288 0 0 chrX 9301192 9301324 -167672816 - MER58A DNA MER1_type 0 132 1 1788 120 54 37 chrX 9301584 9301935 -167672205 + THE1C LTR MaLR 1 357 -18 443 309 62 14 chrX 9302064 9302274 -167671866 + MIR SINE MIR 31 250 -12 5606 139 30 10 chrX 9302456 9304032 -167670108 - L1MA5A LINE L1 -5 6292 4685 271 321 9 36 chrX 9304396 9304508 -167669632 + MIR3 SINE MIR 92 200 -8 2204 140 22 36 chrX 9304901 9305314 -167668826 - Tigger2a DNA MER2_type -26 408 2 372 212 40 20 chrX 9307480 9307579 -167666561 - THE1C LTR MaLR -274 101 1 902 137 51 30 chrX 9307637 9307834 -167666306 + THE1C LTR MaLR 175 375 0 2288 99 0 10 chrX 9308309 9308621 -167665519 - AluSc SINE Alu 0 309 1 2391 99 0 0 chrX 9309515 9309819 -167664321 + AluSx SINE Alu 1 304 -8 22 0 0 0 chrX 9309831 9309853 -167664287 + AT_rich Low_complexity Low_complexity 1 22 0 1375 318 89 57 chrX 9310056 9311631 -167662509 - L1MCc LINE L1 -838 6103 4478 1352 93 0 0 chrX 9311672 9311844 -167662296 - AluY SINE Alu -12 299 128 572 309 104 48 chrX 9311960 9312642 -167661498 - L1MCc LINE L1 -2579 4362 3643 335 267 33 7 chrX 9312668 9312818 -167661322 - L1MCc LINE L1 -3316 3625 3472 554 248 119 91 chrX 9313255 9313741 -167660399 + MLT1G LTR MaLR 29 526 -41 1820 124 30 0 chrX 9314748 9315014 -167659126 + AluJb SINE Alu 1 274 -38 921 86 7 13 chrX 9315021 9315173 -167658967 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 302 232 0 24 chrX 9316191 9316273 -167657867 - MER116 DNA Mariner 0 80 1 1489 263 67 61 chrX 9317549 9319382 -167654758 - L1MCc LINE L1 -4259 2863 817 1121 257 45 53 chrX 9319489 9319834 -167654306 - L1MCc LINE L1 -5840 583 237 2284 118 0 0 chrX 9319834 9320140 -167654000 - AluY SINE Alu -5 306 1 1121 257 45 53 chrX 9320140 9320196 -167653944 - L1MCc LINE L1 -6186 237 182 3422 108 12 0 chrX 9320196 9320697 -167653443 - MER84 LTR ERV1 0 507 1 1121 257 45 53 chrX 9320697 9320799 -167653341 - L1MCc LINE L1 -6241 182 83 284 235 12 12 chrX 9321328 9321409 -167652731 - Charlie8 DNA MER1_type -1996 421 341 1669 109 158 21 chrX 9321409 9321739 -167652401 + THE1C LTR MaLR 1 375 0 10797 71 13 0 chrX 9321756 9323175 -167650965 + HERVL LTR ERVL 2818 4254 -1400 3911 89 2 34 chrX 9323535 9324131 -167650009 - L1PB1 LINE L1 0 6151 5575 411 321 91 49 chrX 9324572 9324977 -167649163 + L1MC4a LINE L1 5521 5942 -1866 264 253 13 0 chrX 9325119 9325198 -167648942 - L1MC5 LINE L1 -73 7888 7809 363 23 0 0 chrX 9325256 9325300 -167648840 + (CA)n Simple_repeat Simple_repeat 1 44 0 334 309 61 44 chrX 9325473 9326133 -167648007 - L1M4 LINE L1 -3228 2918 2248 234 0 0 0 chrX 9327623 9327649 -167646491 + (ATG)n Simple_repeat Simple_repeat 1 26 0 826 232 30 15 chrX 9327653 9327671 -167646469 - L1 LINE L1 -856 5290 5274 298 0 23 23 chrX 9327671 9327714 -167646426 + (TA)n Simple_repeat Simple_repeat 2 44 0 826 232 30 15 chrX 9327714 9327958 -167646182 - L1 LINE L1 -872 5274 5024 344 290 107 76 chrX 9328946 9329104 -167645036 + MIR SINE MIR 1 169 -93 1353 268 76 16 chrX 9329104 9329590 -167644550 + MLT2B2 LTR ERVL 1 515 0 344 290 107 76 chrX 9329590 9329655 -167644485 + MIR SINE MIR 169 231 -31 394 237 29 4 chrX 9331667 9332022 -167642118 + (TA)n Simple_repeat Simple_repeat 1 363 0 22 0 0 0 chrX 9332068 9332090 -167642050 + AT_rich Low_complexity Low_complexity 1 22 0 215 137 55 0 chrX 9332301 9332374 -167641766 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 70 0 0 chrX 9332377 9332420 -167641720 + AT_rich Low_complexity Low_complexity 1 43 0 6469 135 10 3 chrX 9332725 9334100 -167640040 + L1MA2 LINE L1 4922 6304 0 24 0 0 0 chrX 9334102 9334126 -167640014 + AT_rich Low_complexity Low_complexity 1 24 0 410 317 72 0 chrX 9334130 9334297 -167639843 + MIR SINE MIR 81 259 -3 231 36 0 0 chrX 9334692 9334720 -167639420 + (GA)n Simple_repeat Simple_repeat 1 28 0 214 370 14 0 chrX 9334762 9334835 -167639305 - L2 LINE L2 -674 2640 2567 740 226 91 68 chrX 9334888 9335197 -167638943 - MLT1C LTR MaLR -64 403 88 1054 88 0 0 chrX 9335197 9335334 -167638806 - AluSg/x SINE Alu -5 307 171 1895 65 0 8 chrX 9335434 9335679 -167638461 + L1PA5 LINE L1 5908 6150 -4 1913 129 0 3 chrX 9335748 9336073 -167638067 - L1P LINE L1 -1223 4923 4600 2973 70 0 12 chrX 9336076 9336490 -167637650 + L1PA8A LINE L1 5719 6127 -4 798 276 89 13 chrX 9337624 9338084 -167636056 + MER20B DNA MER1_type 209 703 -80 1243 229 75 5 chrX 9338175 9338559 -167635581 + L1M4 LINE L1 4760 5170 -976 2080 199 28 37 chrX 9339200 9339708 -167634432 + MLT1D LTR MaLR 1 503 -2 223 318 30 23 chrX 9339964 9340096 -167634044 + (CATG)n Simple_repeat Simple_repeat 4 136 0 299 308 93 6 chrX 9340115 9340287 -167633853 + MARNA DNA Mariner 292 478 -108 2200 116 137 11 chrX 9341302 9341682 -167632458 + MSTA LTR MaLR 1 428 0 25 51 0 0 chrX 9341782 9341821 -167632319 + AT_rich Low_complexity Low_complexity 1 39 0 187 302 16 0 chrX 9342163 9342226 -167631914 + L3b LINE CR1 1169 1232 -351 2323 90 3 0 chrX 9342567 9342867 -167631273 + AluSq SINE Alu 1 301 -12 198 0 0 0 chrX 9342870 9342892 -167631248 + (CA)n Simple_repeat Simple_repeat 1 22 0 2421 28 0 0 chrX 9342978 9343264 -167630876 - L1PA4 LINE L1 -3 6152 5867 1906 109 40 0 chrX 9344279 9344406 -167629734 + AluSx SINE Alu 1 121 -191 420 71 0 0 chrX 9344406 9344462 -167629678 + (CAA)n Simple_repeat Simple_repeat 1 56 0 1906 109 40 0 chrX 9344462 9344610 -167629530 + AluSx SINE Alu 121 287 -25 941 113 0 0 chrX 9345059 9345200 -167628940 - AluSp/q SINE Alu 0 313 173 403 273 164 77 chrX 9345267 9345890 -167628250 - L1M2 LINE L1 -5646 1203 527 1403 134 5 0 chrX 9347339 9347563 -167626577 - L1PA15 LINE L1 -5 6160 5936 231 114 0 0 chrX 9349778 9349813 -167624327 + (GAA)n Simple_repeat Simple_repeat 2 36 0 409 310 177 29 chrX 9349946 9350330 -167623810 - L2 LINE L2 -2024 1290 850 355 266 53 111 chrX 9350331 9350557 -167623583 + MIR SINE MIR 1 213 -49 657 265 10 15 chrX 9350611 9350815 -167623325 - L2 LINE L2 -2464 850 648 924 68 53 0 chrX 9351543 9351675 -167622465 + MER85 DNA T2_type 1 139 0 183 353 128 32 chrX 9352329 9352578 -167621562 + L2 LINE L2 2393 2665 -649 2227 121 0 0 chrX 9354144 9354450 -167619690 + AluSx SINE Alu 2 307 -5 799 201 26 0 chrX 9355679 9355833 -167618307 - FRAM SINE Alu -24 152 1 451 125 65 0 chrX 9355846 9356014 -167618126 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 304 136 64 0 chrX 9356029 9356154 -167617986 + (TATAA)n Simple_repeat Simple_repeat 2 134 0 379 142 68 0 chrX 9356169 9356331 -167617809 + (TATAA)n Simple_repeat Simple_repeat 2 174 0 333 98 92 7 chrX 9356384 9356537 -167617603 + (TA)n Simple_repeat Simple_repeat 1 166 0 295 236 11 34 chrX 9356767 9356856 -167617284 + G-rich Low_complexity Low_complexity 3 89 0 294 156 0 0 chrX 9356921 9356985 -167617155 + G-rich Low_complexity Low_complexity 1 64 0 252 272 20 54 chrX 9357034 9357228 -167616912 + (CGGGG)n Simple_repeat Simple_repeat 1 187 0 318 89 0 0 chrX 9357342 9357387 -167616753 + AluSq/x SINE Alu 90 134 -169 29 0 0 0 chrX 9357387 9357416 -167616724 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chrX 9357445 9357477 -167616663 + AT_rich Low_complexity Low_complexity 1 32 0 379 288 100 18 chrX 9357539 9357768 -167616372 + MER46C DNA MER2_type 1 248 -90 1550 179 50 0 chrX 9357773 9358052 -167616088 + MER1A DNA MER1_type 3 295 -234 1281 242 60 23 chrX 9358113 9358464 -167615676 + MLT1A1 LTR MaLR 1 364 -1 892 202 98 7 chrX 9360787 9361078 -167613062 - L1MB2 LINE L1 -34 6635 6359 * 1186 242 16 22 chrX 9361074 9361438 -167612702 - L1MB2 LINE L1 -1091 5553 5192 * 1252 244 49 16 chrX 9361430 9362008 -167612132 - L1MB2 LINE L1 -3862 2782 2186 * 1550 216 37 117 chrX 9362001 9362970 -167611170 + L1M3a LINE L1 777 1617 -4767 22 35 0 0 chrX 9363100 9363129 -167611011 + AT_rich Low_complexity Low_complexity 1 29 0 2291 90 3 3 chrX 9363223 9363523 -167610617 + AluY SINE Alu 1 300 -11 216 0 0 0 chrX 9363613 9363637 -167610503 + (T)n Simple_repeat Simple_repeat 1 24 0 668 155 16 39 chrX 9363649 9363778 -167610362 + FLAM_C SINE Alu 2 127 -16 200 206 32 16 chrX 9363992 9364055 -167610085 + (TA)n Simple_repeat Simple_repeat 2 65 0 38 39 0 0 chrX 9364897 9364949 -167609191 + AT_rich Low_complexity Low_complexity 1 52 0 1264 172 5 0 chrX 9365071 9365280 -167608860 + AluJb SINE Alu 95 304 -8 1277 155 5 14 chrX 9365310 9365517 -167608623 + AluJo SINE Alu 1 205 -107 751 176 0 0 chrX 9365797 9365916 -167608224 - FLAM_C SINE Alu -20 123 5 985 273 24 60 chrX 9365969 9366435 -167607705 + MLT1D LTR MaLR 3 451 -54 1820 159 24 11 chrX 9366465 9366837 -167607303 - L1MA8 LINE L1 -6 6285 5909 671 227 0 0 chrX 9366838 9366966 -167607174 + FLAM_C SINE Alu 2 129 -4 360 0 0 0 chrX 9366967 9367007 -167607133 + (TG)n Simple_repeat Simple_repeat 2 41 0 475 117 61 6 chrX 9367010 9367173 -167606967 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 1041 232 42 110 chrX 9367661 9368519 -167605621 - L1MB2 LINE L1 -4657 1918 1039 406 300 175 21 chrX 9369052 9369332 -167604808 - L1MB2 LINE L1 -5855 687 365 28 48 0 0 chrX 9369694 9369736 -167604404 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chrX 9370213 9370256 -167603884 + AT_rich Low_complexity Low_complexity 1 43 0 1933 130 0 7 chrX 9370359 9370674 -167603466 - AluSx SINE Alu 0 315 3 258 304 36 18 chrX 9371318 9371430 -167602710 - MLT1H1 LTR MaLR -333 222 109 3349 206 73 9 chrX 9371894 9372384 -167601756 - L1MA9 LINE L1 0 6312 5855 207 0 0 0 chrX 9372384 9372407 -167601733 + (TG)n Simple_repeat Simple_repeat 2 24 0 3349 206 73 9 chrX 9372407 9373579 -167600561 - L1MA9 LINE L1 -457 5855 4540 933 199 6 17 chrX 9374780 9374961 -167599179 + MER5A DNA MER1_type 10 188 -1 1711 255 38 36 chrX 9375328 9375885 -167598255 - MER74A LTR ERVL 0 558 1 194 225 0 0 chrX 9376116 9376156 -167597984 - L2 LINE L2 -5 3308 3269 2253 117 0 0 chrX 9376303 9376612 -167597528 + AluY SINE Alu 1 309 -2 615 236 0 0 chrX 9376673 9376783 -167597357 - FLAM_A SINE Alu -32 110 1 849 277 36 27 chrX 9377660 9378071 -167596069 + L1PA12 LINE L1 1 415 -7166 370 370 52 35 chrX 9378417 9378590 -167595550 + L1M2 LINE L1 656 831 -6018 230 306 84 58 chrX 9378662 9378923 -167595217 + L1M2 LINE L1 800 1067 -5782 297 376 12 18 chrX 9379174 9379344 -167594796 + L1PA12 LINE L1 1776 1944 -5641 1546 235 75 27 chrX 9379428 9380276 -167593864 - L1MCb LINE L1 -4856 1189 815 518 227 76 65 chrX 9380276 9380786 -167593354 - MER4C LTR ERV1 0 685 1 335 293 40 30 chrX 9380802 9381000 -167593140 - MER4C-int LTR ERV1 -14 6584 6385 650 222 7 0 chrX 9381132 9381276 -167592864 - MER4C-int LTR ERV1 -335 5996 5852 422 36 18 0 chrX 9381297 9381353 -167592787 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 7557 188 40 58 chrX 9381379 9381935 -167592205 - LTR49-int LTR ERV1 -497 5983 5418 2402 84 0 3 chrX 9381935 9382231 -167591909 - AluSg SINE Alu -15 295 1 7557 188 40 58 chrX 9382231 9384125 -167590015 - LTR49-int LTR ERV1 -1062 5418 2041 313 202 81 30 chrX 9384126 9384278 -167589862 - LTR49-int LTR ERV1 -3015 3316 1295 281 67 0 22 chrX 9385004 9385049 -167589091 + (CAG)n Simple_repeat Simple_repeat 2 45 0 921 208 25 72 chrX 9386615 9386851 -167587289 + MER50 LTR ERV1 510 734 0 9410 117 74 17 chrX 9386851 9388344 -167585796 + THE1C-int LTR MaLR 4 1580 0 2000 143 102 6 chrX 9388344 9388686 -167585454 + THE1C LTR MaLR 1 375 0 9180 178 8 4 chrX 9388691 9390380 -167583760 - L1P LINE L1 -743 5403 3707 2317 173 22 10 chrX 9390379 9390796 -167583344 - L1PB4 LINE L1 -115 6041 5620 * 785 211 23 6 chrX 9391305 9391476 -167582664 + MER92B LTR ERV1 1 174 -462 232 150 50 0 chrX 9391537 9391597 -167582543 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 1317 203 117 34 chrX 9392411 9392829 -167581311 - MER92B LTR ERV1 0 636 184 509 114 190 0 chrX 9392843 9392968 -167581172 + MSTD LTR MaLR 199 383 -8 2270 204 8 6 chrX 9392971 9393446 -167580694 - L1MD3 LINE L1 -122 7873 7398 460 322 50 32 chrX 9393446 9393729 -167580411 + L2 LINE L2 2688 2975 -339 218 307 59 10 chrX 9393856 9393957 -167580183 + L2 LINE L2 3208 3313 0 805 169 0 8 chrX 9396554 9396678 -167577462 + FLAM_C SINE Alu 2 124 -19 240 35 0 0 chrX 9396682 9396711 -167577429 + (CAA)n Simple_repeat Simple_repeat 2 30 0 287 248 28 55 chrX 9397250 9397359 -167576781 + MIR SINE MIR 39 144 -64 210 71 0 0 chrX 9397581 9397609 -167576531 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 780 153 51 0 chrX 9398453 9398571 -167575569 + AluJo/FLAM SINE Alu 3 126 -186 1738 162 14 17 chrX 9398572 9398869 -167575271 + AluJo SINE Alu 1 296 -16 46 62 0 0 chrX 9399162 9399243 -167574897 + GC_rich Low_complexity Low_complexity 1 81 0 235 238 24 24 chrX 9399249 9399375 -167574765 + (CGCGG)n Simple_repeat Simple_repeat 1 126 0 1658 234 83 45 chrX 9399738 9400221 -167573919 + MLT1D LTR MaLR 2 502 -3 419 258 37 43 chrX 9400224 9400387 -167573753 + MER5A DNA MER1_type 28 189 0 2939 188 33 5 chrX 9401630 9402199 -167571941 + L1MB3 LINE L1 5590 6174 -9 605 158 75 0 chrX 9402226 9402359 -167571781 + L1MB4 LINE L1 6038 6180 0 32 26 0 0 chrX 9402394 9402433 -167571707 + AT_rich Low_complexity Low_complexity 1 39 0 256 275 44 0 chrX 9402809 9402900 -167571240 - LTR33 LTR ERVL -400 121 27 30 45 0 0 chrX 9402909 9402953 -167571187 + AT_rich Low_complexity Low_complexity 1 44 0 2191 144 14 11 chrX 9403787 9404148 -167569992 - L1MA8 LINE L1 -4 6287 5926 571 207 8 8 chrX 9404633 9404754 -167569386 - MER96B DNA MER1_type? 0 417 297 2175 103 0 0 chrX 9404791 9405099 -167569041 - AluSx SINE Alu 0 308 1 254 253 162 0 chrX 9405181 9405335 -167568805 - MER96B DNA MER1_type? -238 179 1 541 188 26 8 chrX 9405702 9405819 -167568321 + L1MB7 LINE L1 6057 6175 -9 22 35 0 0 chrX 9406644 9406673 -167567467 + AT_rich Low_complexity Low_complexity 1 29 0 784 230 32 0 chrX 9406868 9407055 -167567085 - MER20B DNA MER1_type -25 194 2 224 326 97 14 chrX 9407067 9407211 -167566929 - MIR SINE MIR -43 219 64 1010 247 34 8 chrX 9407281 9407548 -167566592 + L1MD2 LINE L1 5571 5844 -515 1814 152 3 10 chrX 9407549 9407839 -167566301 + AluJo SINE Alu 1 288 -24 270 0 0 0 chrX 9407839 9407869 -167566271 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 249 294 0 24 chrX 9407869 9407954 -167566186 + L1MC4 LINE L1 6615 6697 -1345 259 210 16 0 chrX 9407954 9408016 -167566124 - LTR66 LTR ERVL -171 439 377 733 251 72 78 chrX 9408016 9408240 -167565900 + L1ME1 LINE L1 5855 6037 -129 1820 163 3 10 chrX 9408240 9408535 -167565605 + AluJb SINE Alu 1 293 -19 733 251 72 78 chrX 9408535 9408645 -167565495 + L1ME1 LINE L1 6037 6146 -20 716 212 206 21 chrX 9409553 9409742 -167564398 + MER58A DNA MER1_type 1 224 0 1303 206 0 0 chrX 9409746 9409979 -167564161 - AluJo SINE Alu -79 233 1 235 341 44 7 chrX 9412028 9412163 -167561977 - LTR16B LTR ERVL -158 306 167 1547 181 88 9 chrX 9413103 9413439 -167560701 + MLT1A1 LTR MaLR 1 455 -2 1661 107 133 125 chrX 9414437 9414812 -167559328 + MER83B LTR ERV1 1 378 0 23125 115 142 62 chrX 9415411 9420975 -167553165 + L1PA7 LINE L1 12 6037 -117 37 0 0 0 chrX 9421341 9421378 -167552762 + AT_rich Low_complexity Low_complexity 1 37 0 2005 115 0 67 chrX 9423309 9423446 -167550694 + AluSc SINE Alu 1 146 -163 2379 98 0 3 chrX 9423446 9423753 -167550387 + AluSg SINE Alu 1 306 -4 2005 115 0 67 chrX 9423753 9423945 -167550195 + AluSc SINE Alu 146 308 -1 541 151 8 14 chrX 9424121 9424224 -167549916 - L1M2 LINE L1 -402 5749 5676 256 114 0 0 chrX 9424224 9424268 -167549872 - Alu SINE Alu 0 300 257 568 67 0 13 chrX 9424268 9424343 -167549797 - L1P5 LINE L1 -463 5688 5615 2988 103 15 5 chrX 9424343 9424742 -167549398 + L1PB1 LINE L1 5739 6150 -1 22 0 0 0 chrX 9425756 9425778 -167548362 + AT_rich Low_complexity Low_complexity 1 22 0 180 111 0 0 chrX 9425778 9425805 -167548335 + (GA)n Simple_repeat Simple_repeat 2 28 0 523 168 75 65 chrX 9425946 9426053 -167548087 + AluJo SINE Alu 17 124 -188 258 32 0 0 chrX 9426057 9426088 -167548052 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1032 198 20 0 chrX 9427057 9427254 -167546886 + AluJo SINE Alu 110 310 -2 259 291 0 23 chrX 9427285 9427371 -167546769 + L2 LINE L2 1702 1785 -1529 343 334 126 26 chrX 9427405 9427655 -167546485 - L2 LINE L2 -816 2498 2204 2893 143 5 20 chrX 9427655 9428096 -167546044 + Tigger2a DNA MER2_type 1 434 0 343 334 126 26 chrX 9428096 9428186 -167545954 - L2 LINE L2 -1110 2204 2124 355 290 64 58 chrX 9428354 9428699 -167545441 - HAL1b LINE L1 -671 677 331 308 228 24 138 chrX 9429311 9429478 -167544662 + L1MEd LINE L1 1465 1612 -4918 295 283 96 18 chrX 9429542 9429708 -167544432 + L1MEd LINE L1 1654 1832 -4708 28 0 0 0 chrX 9429957 9429985 -167544155 + AT_rich Low_complexity Low_complexity 1 28 0 346 245 151 28 chrX 9430073 9430285 -167543855 + L1MEd LINE L1 2325 2562 -3978 235 360 70 3 chrX 9430322 9430622 -167543518 + L1MEd LINE L1 2693 3012 -3528 389 298 7 0 chrX 9430681 9430822 -167543318 + L1MEd LINE L1 3187 3328 -3212 335 213 0 0 chrX 9431380 9431440 -167542700 - MER58A DNA MER1_type -11 213 154 547 191 9 29 chrX 9431440 9431545 -167542595 - MER58A DNA MER1_type -3 104 2 2087 150 31 6 chrX 9431695 9432021 -167542119 + MER2 DNA MER2_type 12 345 0 429 55 0 0 chrX 9432326 9432381 -167541759 - MLT2A2 LTR ERVL 0 453 399 189 0 0 0 chrX 9432381 9432402 -167541738 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 286 61 41 0 chrX 9432401 9432450 -167541690 + (TA)n Simple_repeat Simple_repeat 2 52 0 594 109 0 0 chrX 9432692 9432802 -167541338 + (G)n Simple_repeat Simple_repeat 1 110 0 274 141 0 77 chrX 9432803 9432882 -167541258 + (CGGGGG)n Simple_repeat Simple_repeat 1 72 0 306 157 65 19 chrX 9432932 9433040 -167541100 + (CG)n Simple_repeat Simple_repeat 1 113 0 21 36 0 0 chrX 9433055 9433083 -167541057 + GC_rich Low_complexity Low_complexity 1 28 0 2725 240 12 7 chrX 9433885 9434259 -167539881 + L1MEd LINE L1 4181 4562 -1978 565 91 13 0 chrX 9434259 9434336 -167539804 + MADE1 DNA Mariner 1 78 -2 2725 240 12 7 chrX 9434336 9434698 -167539442 + L1MEd LINE L1 4562 4921 -1619 5027 161 3 6 chrX 9434798 9436054 -167538086 + L1PA16 LINE L1 4923 6183 0 3453 165 28 18 chrX 9436278 9436992 -167537148 - L1MA7 LINE L1 0 6291 5571 479 180 0 0 chrX 9436999 9437088 -167537052 - L1MA7 LINE L1 -815 5476 5388 1330 147 49 0 chrX 9437095 9437319 -167536821 - Tigger3(Golem) DNA MER2_type 0 3038 2804 4246 213 76 31 chrX 9437319 9438547 -167535593 - L1MA7 LINE L1 -1193 4953 3671 775 224 54 18 chrX 9438891 9439114 -167535026 - MER46C DNA MER2_type -1 337 107 894 66 0 0 chrX 9439277 9439383 -167534757 + AluY SINE Alu 27 132 -179 25 0 0 0 chrX 9440008 9440033 -167534107 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chrX 9440672 9440698 -167533442 + (CA)n Simple_repeat Simple_repeat 2 27 0 283 260 0 13 chrX 9440771 9440848 -167533292 + L1M3c LINE L1 949 1024 -5117 808 237 32 41 chrX 9440872 9441265 -167532875 + L1M4 LINE L1 936 1742 -4729 2376 141 70 7 chrX 9441783 9442186 -167531954 - MSTA LTR MaLR 0 428 1 2198 89 3 0 chrX 9442736 9443027 -167531113 + AluSp SINE Alu 9 300 -13 798 257 69 5 chrX 9443156 9443358 -167530782 - MIR SINE MIR -42 220 6 34 72 0 0 chrX 9443639 9443708 -167530432 + AT_rich Low_complexity Low_complexity 1 69 0 4859 110 12 8 chrX 9444158 9444904 -167529236 - L1PA15 LINE L1 -13 6152 5404 1334 152 33 56 chrX 9444904 9445207 -167528933 + THE1C LTR MaLR 1 296 -79 301 111 28 139 chrX 9445206 9445278 -167528862 + MER84 LTR ERVI 11 74 -433 * 1414 214 105 21 chrX 9445278 9445745 -167528395 + MER84 LTR ERV1 2 507 0 2032 143 68 0 chrX 9446187 9446552 -167527588 - MLT1B LTR MaLR 0 390 1 344 296 138 50 chrX 9446741 9447080 -167527060 - L1M2 LINE L1 -5484 1365 757 324 59 137 0 chrX 9447268 9447421 -167526719 + (TA)n Simple_repeat Simple_repeat 2 175 0 2539 103 25 10 chrX 9447692 9448090 -167526050 - MLT2A1 LTR ERVL -40 404 1 1110 160 19 9 chrX 9449412 9449464 -167524676 - MER20 DNA MER1_type 0 219 169 207 0 0 0 chrX 9449464 9449487 -167524653 + (TG)n Simple_repeat Simple_repeat 1 23 0 1110 160 19 9 chrX 9449487 9449647 -167524493 - MER20 DNA MER1_type -50 169 5 281 268 108 84 chrX 9450125 9450310 -167523830 + HAL1 LINE L1 1234 1413 -1094 2839 102 21 37 chrX 9450310 9450743 -167523397 - MSTC LTR MaLR 0 428 3 281 268 108 84 chrX 9450743 9450983 -167523157 + HAL1 LINE L1 1413 1669 -838 408 297 103 20 chrX 9451381 9451752 -167522388 + L1M4 LINE L1 2443 2851 -3689 383 290 100 65 chrX 9452315 9452465 -167521675 + L1M4 LINE L1 4944 5087 -1453 1722 143 23 7 chrX 9452465 9452766 -167521374 + AluY SINE Alu 1 306 -5 383 290 100 65 chrX 9452766 9452894 -167521246 + L1M4 LINE L1 5087 5232 -1308 432 200 10 0 chrX 9455167 9455267 -167518873 + MER97c DNA MER1_type? 71 171 -919 2334 81 0 19 chrX 9456230 9456539 -167517601 + AluSx SINE Alu 1 303 -9 297 0 0 0 chrX 9456553 9456586 -167517554 + (TG)n Simple_repeat Simple_repeat 2 34 0 670 124 16 8 chrX 9457094 9457215 -167516925 + CT-rich Low_complexity Low_complexity 4 125 0 852 174 0 0 chrX 9457220 9457358 -167516782 - FLAM_C SINE Alu -5 138 1 608 150 44 7 chrX 9458610 9458835 -167515305 + AluJo SINE Alu 1 282 -30 186 43 0 0 chrX 9458837 9458860 -167515280 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1916 148 22 19 chrX 9459124 9459483 -167514657 + MLT1A1 LTR MaLR 6 365 0 207 196 22 0 chrX 9459519 9459565 -167514575 + (CA)n Simple_repeat Simple_repeat 1 47 0 473 250 29 15 chrX 9459888 9460024 -167514116 + Charlie8 DNA MER1_type 40 177 -2240 215 296 42 28 chrX 9460332 9460403 -167513737 + L2 LINE L2 2407 2478 -836 * 335 296 138 33 chrX 9460402 9460554 -167513586 - L2 LINE L2 -283 3030 2863 252 0 0 0 chrX 9460599 9460627 -167513513 + (TG)n Simple_repeat Simple_repeat 2 29 0 458 262 81 27 chrX 9462364 9462513 -167511627 + MIR SINE MIR 28 184 -78 1597 300 94 31 chrX 9464770 9465596 -167508544 + L2 LINE L2 472 1349 -1965 367 318 117 7 chrX 9465750 9465904 -167508236 - MIR SINE MIR -84 178 8 291 205 84 0 chrX 9468151 9468234 -167505906 - MER58B DNA MER1_type -3 338 249 257 291 60 8 chrX 9468269 9468403 -167505737 - HAL1b LINE L1 -4 1344 1204 1010 143 10 54 chrX 9468413 9468616 -167505524 - MER47A DNA MER2_type -1 365 172 911 196 29 6 chrX 9468630 9468803 -167505337 + FRAM SINE Alu 1 176 0 781 168 6 52 chrX 9468818 9468991 -167505149 - MER47A DNA MER2_type -200 166 2 381 265 56 37 chrX 9469009 9469333 -167504807 - HAL1b LINE L1 -187 1161 832 22 0 0 0 chrX 9469344 9469366 -167504774 + AT_rich Low_complexity Low_complexity 1 22 0 300 313 16 39 chrX 9469396 9469578 -167504562 - HAL1b LINE L1 -630 718 541 482 190 98 15 chrX 9469581 9469726 -167504414 + MLT1G1 LTR MaLR 213 415 -180 461 286 8 16 chrX 9470180 9470306 -167503834 + L2 LINE L2 3187 3311 -2 728 207 67 0 chrX 9471468 9471632 -167502508 - MER58A DNA MER1_type -15 209 35 255 309 0 0 chrX 9472110 9472191 -167501949 + Tigger3(Golem) DNA MER2_type 1 81 -2948 680 193 0 0 chrX 9472197 9472316 -167501824 + Tigger3(Golem) DNA MER2_type 2909 3027 -2 1714 162 67 63 chrX 9472506 9472750 -167501390 - MLT1C LTR MaLR -2 465 217 2070 70 4 0 chrX 9472750 9473020 -167501120 - L1PA8A LINE L1 -1 6130 5860 1714 162 67 63 chrX 9473020 9473238 -167500902 - MLT1C LTR MaLR -250 217 1 409 274 83 81 chrX 9474442 9474719 -167499421 - MLT1H LTR MaLR -142 407 127 1853 166 157 18 chrX 9474719 9475159 -167498981 + MLT1D LTR MaLR 5 505 0 409 274 83 81 chrX 9475159 9475253 -167498887 - MLT1H LTR MaLR -422 127 35 2065 172 53 47 chrX 9476064 9476534 -167497606 - MLT1D LTR MaLR -2 503 31 226 318 37 19 chrX 9476889 9476996 -167497144 + MIR3 SINE MIR 72 180 -28 1965 193 31 84 chrX 9477008 9477557 -167496583 - MLT2B1 LTR ERVL 0 520 1 207 69 0 0 chrX 9478806 9478835 -167495305 + (CA)n Simple_repeat Simple_repeat 2 30 0 185 363 59 0 chrX 9479416 9479518 -167494622 - MIR SINE MIR -121 141 34 216 305 191 9 chrX 9479823 9479928 -167494212 + L2 LINE L2 3141 3264 -8 486 261 34 45 chrX 9480576 9480752 -167493388 - MIR SINE MIR 0 262 89 342 286 10 0 chrX 9480886 9480984 -167493156 - MIR SINE MIR -130 132 34 342 0 0 0 chrX 9482261 9482299 -167491841 + (CA)n Simple_repeat Simple_repeat 2 39 0 1317 210 67 67 chrX 9482356 9482494 -167491646 - MER67D LTR ERV1 -3 511 374 1413 158 102 35 chrX 9482494 9482778 -167491362 + AluJo SINE Alu 1 303 -9 1317 210 67 67 chrX 9482778 9483086 -167491054 - MER67D LTR ERV1 -139 375 65 933 166 17 11 chrX 9483087 9483268 -167490872 + MLT1A1 LTR MaLR 5 186 -179 257 226 107 0 chrX 9483265 9483349 -167490791 + MLT1F1 LTR MaLR 475 567 0 * 245 296 69 84 chrX 9483523 9483726 -167490414 + L2 LINE L2 2830 3029 -243 298 316 49 31 chrX 9483822 9484047 -167490093 - L2 LINE L2 -556 2758 2530 452 319 35 90 chrX 9484048 9484483 -167489657 - L2 LINE L2 -1115 2199 1789 427 306 69 21 chrX 9484654 9485072 -167489068 + L1ME LINE L1 4077 4514 -1632 21 36 0 0 chrX 9485192 9485220 -167488920 + AT_rich Low_complexity Low_complexity 1 28 0 319 336 70 50 chrX 9485388 9485649 -167488491 + L1ME LINE L1 4943 5197 -1065 480 60 12 24 chrX 9485649 9485732 -167488408 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 319 336 70 50 chrX 9485732 9486009 -167488131 + L1ME LINE L1 5197 5504 -758 249 289 12 0 chrX 9486023 9486106 -167488034 + L1ME LINE L1 5576 5659 -503 320 245 237 7 chrX 9487069 9487208 -167486932 - MIR SINE MIR -8 254 84 41 82 0 0 chrX 9487386 9487483 -167486657 + AT_rich Low_complexity Low_complexity 1 97 0 426 316 124 0 chrX 9488261 9488470 -167485670 + LTR16C LTR ERVL 203 437 -54 226 290 179 12 chrX 9488541 9488703 -167485437 + L2 LINE L2 3113 3301 -12 4518 82 5 16 chrX 9490047 9490731 -167483409 + L1PB2 LINE L1 5519 6195 0 904 180 90 122 chrX 9490771 9491148 -167482992 - MLT1A1 LTR MaLR 0 365 1 24 32 0 0 chrX 9491336 9491367 -167482773 + AT_rich Low_complexity Low_complexity 1 31 0 378 0 0 0 chrX 9491478 9491520 -167482620 + (TA)n Simple_repeat Simple_repeat 1 42 0 2092 163 5 14 chrX 9492182 9492550 -167481590 - MLT1A1 LTR MaLR 0 365 1 1559 182 54 11 chrX 9493421 9493701 -167480439 + AluJo SINE Alu 1 292 -20 623 195 24 61 chrX 9494543 9494616 -167479524 + MER5A DNA MER1_type 21 95 -94 2112 152 30 25 chrX 9494616 9494977 -167479163 - THE1B LTR MaLR 0 364 2 623 195 24 61 chrX 9494977 9495067 -167479073 + MER5A DNA MER1_type 95 178 -11 2225 190 29 45 chrX 9495554 9496064 -167478076 - MLT1D LTR MaLR 0 505 4 308 256 75 8 chrX 9497159 9497292 -167476848 + LTR33 LTR ERVL 24 165 -356 256 237 40 0 chrX 9497847 9497923 -167476217 + MIR SINE MIR 125 203 -59 397 177 23 15 chrX 9497931 9498061 -167476079 + CT-rich Low_complexity Low_complexity 2 132 0 296 365 55 20 chrX 9500035 9500235 -167473905 + L2 LINE L2 2841 3047 -266 1794 179 81 20 chrX 9500552 9500959 -167473181 + MSTB1 LTR MaLR 1 432 0 468 286 42 75 chrX 9501245 9501553 -167472587 - L1ME LINE L1 -532 5621 5324 217 186 23 0 chrX 9501667 9501710 -167472430 + A-rich Low_complexity Low_complexity 5 48 0 302 287 45 13 chrX 9501752 9501909 -167472231 - L1ME LINE L1 -1529 4600 4439 253 177 42 42 chrX 9501993 9502089 -167472051 - L1ME LINE L1 -2348 3781 3686 250 200 0 31 chrX 9502096 9502161 -167471979 - L1MB8 LINE L1 -2 6176 6114 660 292 0 0 chrX 9502163 9502317 -167471823 + FRAM SINE Alu 1 152 -24 832 196 91 5 chrX 9502347 9502546 -167471594 - L1MB8 LINE L1 -53 6125 5910 320 330 62 16 chrX 9502554 9502748 -167471392 - L1ME LINE L1 -2458 3671 3469 464 312 88 37 chrX 9502765 9503118 -167471022 + L1 LINE L1 3825 4195 -1951 1877 170 6 12 chrX 9503120 9503461 -167470679 - MER7A DNA MER2_type -9 337 1 344 331 54 14 chrX 9503461 9503609 -167470531 + L1 LINE L1 4205 4358 -1788 319 341 119 59 chrX 9503660 9504205 -167469935 - L1ME LINE L1 -5503 616 39 358 74 19 0 chrX 9504274 9504328 -167469812 - Alu SINE Alu -1 301 247 1061 155 133 0 chrX 9504384 9504610 -167469530 + LTR47A LTR ERVL 197 452 0 2052 217 78 25 chrX 9504768 9505322 -167468818 + MLT1E LTR MaLR 11 593 0 188 317 83 0 chrX 9505811 9505871 -167468269 - L2 LINE L2 -1 3271 3207 1287 254 60 9 chrX 9506170 9506604 -167467536 + MLT1C LTR MaLR 12 467 0 360 0 0 0 chrX 9506976 9507016 -167467124 + (CA)n Simple_repeat Simple_repeat 2 41 0 879 214 29 29 chrX 9508348 9508554 -167465586 - MER3 DNA MER1_type 0 209 4 2243 108 0 3 chrX 9509090 9509397 -167464743 + AluSq SINE Alu 1 306 -7 317 303 68 8 chrX 9510768 9510900 -167463240 + MIR SINE MIR 60 199 -63 494 151 0 0 chrX 9511266 9511352 -167462788 - MIR SINE MIR -129 133 48 229 257 0 0 chrX 9511546 9511616 -167462524 + (ATG)n Simple_repeat Simple_repeat 3 72 0 300 358 106 6 chrX 9513040 9513219 -167460921 - L3 LINE CR1 -458 1119 923 323 351 55 25 chrX 9513425 9513627 -167460513 + MIR SINE MIR 46 253 -9 972 207 103 0 chrX 9514206 9514409 -167459731 - MER58A DNA MER1_type 0 224 1 461 287 8 0 chrX 9514411 9514533 -167459607 + L2 LINE L2 3191 3313 0 1501 194 110 11 chrX 9514670 9515042 -167459098 + MLT2C2 LTR ERVL 1 409 -55 577 136 30 8 chrX 9515052 9515184 -167458956 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 23 0 0 0 chrX 9515860 9515883 -167458257 + AT_rich Low_complexity Low_complexity 1 23 0 881 138 15 0 chrX 9516460 9516590 -167457550 - FLAM_C SINE Alu -11 132 1 1545 209 146 75 chrX 9517436 9518047 -167456093 - MLT1E1 LTR MaLR 0 654 1 1146 206 12 8 chrX 9518377 9518624 -167455516 - MLT1D LTR MaLR 0 505 258 822 225 47 36 chrX 9518625 9518901 -167455239 - LTR24C LTR ERV1 0 635 291 906 158 68 0 chrX 9518902 9519048 -167455092 + FRAM SINE Alu 1 155 -21 1112 144 93 84 chrX 9519052 9519386 -167454754 - LTR24C LTR ERV1 -298 337 1 547 238 6 55 chrX 9519391 9519572 -167454568 - MLT1D LTR MaLR -258 247 76 * 638 220 0 68 chrX 9519483 9519660 -167454480 - MLT2C1 LTR ERVL -232 165 1 2318 81 0 0 chrX 9521341 9521626 -167452514 - AluSp SINE Alu -9 304 20 227 231 0 0 chrX 9521647 9521686 -167452454 + L2 LINE L2 3208 3246 -26 231 342 99 12 chrX 9521764 9521925 -167452215 - MIR SINE MIR -54 208 34 333 243 7 13 chrX 9522163 9522315 -167451825 + GA-rich Low_complexity Low_complexity 2 152 0 253 303 133 36 chrX 9522467 9522662 -167451478 - MIR SINE MIR -18 244 31 904 114 0 0 chrX 9522797 9522920 -167451220 - AluSp/q SINE Alu -18 295 173 248 260 115 77 chrX 9523118 9523275 -167450865 + LTR16A1 LTR ERVL 214 384 -73 2267 92 7 0 chrX 9523275 9523579 -167450561 - AluSx SINE Alu -6 306 1 248 260 115 77 chrX 9523579 9523656 -167450484 + LTR16A1 LTR ERVL 384 457 0 1099 86 0 0 chrX 9523688 9523827 -167450313 - AluSg/x SINE Alu -13 297 159 225 65 0 0 chrX 9524810 9524841 -167449299 + (CA)n Simple_repeat Simple_repeat 1 31 0 2099 224 73 32 chrX 9525656 9526246 -167447894 - MLT1E2 LTR MaLR -12 614 1 220 254 17 0 chrX 9527876 9527935 -167446205 + (TA)n Simple_repeat Simple_repeat 2 61 0 938 164 13 6 chrX 9527939 9528098 -167446042 + FRAM SINE Alu 1 154 -22 753 204 47 13 chrX 9528423 9528658 -167445482 + LTR37A LTR ERV1 184 426 0 23 0 0 0 chrX 9528788 9528811 -167445329 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrX 9529528 9529551 -167444589 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chrX 9529690 9529723 -167444417 + AT_rich Low_complexity Low_complexity 1 33 0 511 321 126 40 chrX 9530253 9530942 -167443198 - L2 LINE L2 -242 3030 2262 756 243 5 36 chrX 9530995 9531217 -167442923 - MER58A DNA MER1_type -3 221 7 1294 222 21 21 chrX 9531754 9532042 -167442098 + AluJo SINE Alu 1 288 -24 193 340 75 38 chrX 9532445 9532551 -167441589 - L2 LINE L2 -1 3271 3162 234 323 82 62 chrX 9533733 9534024 -167440116 + L2 LINE L2 3017 3313 0 23 33 0 0 chrX 9534060 9534090 -167440050 + AT_rich Low_complexity Low_complexity 1 30 0 1275 279 83 2 chrX 9534136 9534732 -167439408 + L1ME3 LINE L1 5524 6162 -2 1024 167 44 31 chrX 9535467 9535694 -167438446 - L1MB4 LINE L1 -5 6175 5946 432 128 0 0 chrX 9535948 9536026 -167438114 + (TG)n Simple_repeat Simple_repeat 1 78 0 2468 79 3 0 chrX 9536592 9536895 -167437245 - AluSx SINE Alu -8 304 1 306 244 116 23 chrX 9538448 9538534 -167435606 + L2 LINE L2 3148 3241 -31 309 135 0 0 chrX 9539905 9539957 -167434183 + (CA)n Simple_repeat Simple_repeat 2 53 0 213 39 0 0 chrX 9540198 9540224 -167433916 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2274 88 0 0 chrX 9540224 9540509 -167433631 - AluSq SINE Alu -28 285 1 989 290 17 60 chrX 9541493 9541929 -167432211 - L1ME3A LINE L1 -57 6113 5712 715 189 16 0 chrX 9541929 9542056 -167432084 - L1MB5 LINE L1 -11 6163 6035 989 290 17 60 chrX 9542056 9542191 -167431949 - L1ME3A LINE L1 -458 5712 5573 379 227 19 58 chrX 9542213 9542367 -167431773 - L1ME4a LINE L1 -6 6115 5968 791 268 60 23 chrX 9542443 9542742 -167431398 - L1ME4a LINE L1 -289 5832 5523 334 352 15 15 chrX 9544094 9544293 -167429847 + L1MC5 LINE L1 6972 7170 -791 342 288 94 43 chrX 9544521 9544990 -167429150 + L1MC5 LINE L1 7261 7753 -208 367 265 24 0 chrX 9545002 9545085 -167429055 + MER81 DNA DNA 26 110 -4 1994 130 0 3 chrX 9545120 9545432 -167428708 + AluSx SINE Alu 1 311 0 842 129 7 0 chrX 9547199 9547339 -167426801 + (ATG)n Simple_repeat Simple_repeat 3 143 0 323 78 20 0 chrX 9548879 9548930 -167425210 + (TA)n Simple_repeat Simple_repeat 1 52 0 369 0 0 0 chrX 9548943 9548984 -167425156 + (TG)n Simple_repeat Simple_repeat 1 41 0 423 56 0 0 chrX 9549646 9549700 -167424440 + (ATG)n Simple_repeat Simple_repeat 3 56 0 22 35 0 0 chrX 9551105 9551134 -167423006 + AT_rich Low_complexity Low_complexity 1 29 0 489 76 0 0 chrX 9551311 9551377 -167422763 + (TG)n Simple_repeat Simple_repeat 1 66 0 1867 234 21 42 chrX 9551946 9552596 -167421544 - Charlie2a DNA MER1_type 0 2862 2226 911 186 62 38 chrX 9552640 9552850 -167421290 - MER20 DNA MER1_type -3 216 2 3244 233 82 49 chrX 9552859 9553182 -167420958 - Charlie2a DNA MER1_type -916 1946 1635 1328 182 60 43 chrX 9553182 9553484 -167420656 + AluJo SINE Alu 1 307 -5 3244 233 82 49 chrX 9553484 9554593 -167419547 - Charlie2a DNA MER1_type -1227 1635 404 284 351 47 12 chrX 9554636 9554807 -167419333 - HAL1 LINE L1 -2314 193 17 878 230 14 23 chrX 9555077 9555294 -167418846 + MER58A DNA MER1_type 4 218 -6 514 147 301 28 chrX 9555700 9555843 -167418297 + MER53 DNA DNA 5 186 -3 1615 186 34 8 chrX 9556023 9556434 -167417706 + LTR19A LTR ERV1 1 478 -8 229 229 0 0 chrX 9556543 9556591 -167417549 + L2 LINE L2 3257 3304 -9 2183 113 0 0 chrX 9556922 9557215 -167416925 + AluSx SINE Alu 1 293 -19 372 273 117 0 chrX 9557228 9557356 -167416784 + MIR SINE MIR 13 155 -107 3334 215 171 4 chrX 9557411 9558324 -167415816 + Tigger6a DNA MER2_type 2 1066 -17 438 20 0 0 chrX 9558356 9558407 -167415733 + (TG)n Simple_repeat Simple_repeat 2 52 0 610 311 68 0 chrX 9558935 9559170 -167414970 + MIR SINE MIR 2 252 -10 276 273 40 30 chrX 9559317 9559416 -167414724 + Charlie2 DNA MER1_type 1 100 -2762 249 194 26 58 chrX 9559489 9559644 -167414496 + (TAA)n Simple_repeat Simple_repeat 2 151 0 249 319 15 0 chrX 9560542 9560649 -167413491 + MIR SINE MIR 51 163 -45 187 189 54 0 chrX 9560660 9560697 -167413443 + L2 LINE L2 3265 3303 -10 283 349 140 29 chrX 9560724 9561174 -167412966 + L2 LINE L2 2175 2674 -640 895 192 77 24 chrX 9561454 9561662 -167412478 - MER20 DNA MER1_type 0 219 1 203 347 0 14 chrX 9562103 9562175 -167411965 + L2 LINE L2 3241 3311 -2 216 67 0 0 chrX 9562177 9562207 -167411933 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chrX 9562406 9562427 -167411713 + AT_rich Low_complexity Low_complexity 1 21 0 911 137 8 8 chrX 9563426 9563557 -167410583 - FLAM_C SINE Alu -2 131 1 243 0 0 0 chrX 9564658 9564685 -167409455 + (GA)n Simple_repeat Simple_repeat 2 28 0 1904 189 58 11 chrX 9564721 9565101 -167409039 + MER77 LTR ERV1 2 399 -206 1762 137 22 4 chrX 9565367 9565682 -167408458 - AluSx SINE Alu 0 320 1 2210 111 0 3 chrX 9566277 9566584 -167407556 + AluSx SINE Alu 5 310 -2 446 235 5 59 chrX 9567488 9567675 -167406465 + G-rich Low_complexity Low_complexity 3 179 0 465 225 5 59 chrX 9568603 9568790 -167405350 + G-rich Low_complexity Low_complexity 3 179 0 1532 107 19 0 chrX 9570587 9570802 -167403338 - L1PA15 LINE L1 -6 6159 5941 402 108 0 0 chrX 9573049 9573123 -167401017 + (CAG)n Simple_repeat Simple_repeat 2 75 0 846 183 0 0 chrX 9573136 9573305 -167400835 + GA-rich Low_complexity Low_complexity 3 171 0 452 284 185 30 chrX 9573439 9573801 -167400339 - L2 LINE L2 -2025 1289 872 557 268 44 16 chrX 9573824 9574007 -167400133 + MIR SINE MIR 1 188 -74 648 260 11 6 chrX 9574083 9574264 -167399876 - L2 LINE L2 -2464 850 669 820 109 78 8 chrX 9575010 9575138 -167399002 + MER85 DNA T2_type 3 139 0 198 360 120 28 chrX 9575797 9576047 -167398093 + L2 LINE L2 2393 2665 -649 2336 88 0 3 chrX 9577610 9577904 -167396236 + AluSx SINE Alu 2 294 -18 1500 210 14 0 chrX 9579155 9579450 -167394690 - AluJo SINE Alu -13 299 1 1960 169 33 8 chrX 9579450 9579818 -167394322 + L1MA8 LINE L1 5909 6285 -6 1208 261 24 62 chrX 9579848 9580315 -167393825 - MLT1D LTR MaLR -54 451 3 815 168 0 0 chrX 9580368 9580487 -167393653 + FLAM_C SINE Alu 5 123 -20 1250 148 5 24 chrX 9580767 9580977 -167393163 - AluJo SINE Alu -106 206 1 1106 191 0 0 chrX 9580992 9581303 -167392837 - AluJo SINE Alu 0 405 95 34 65 0 0 chrX 9581425 9581487 -167392653 + AT_rich Low_complexity Low_complexity 1 62 0 27 0 0 0 chrX 9582580 9582607 -167391533 + AT_rich Low_complexity Low_complexity 1 27 0 677 142 124 9 chrX 9582612 9582725 -167391415 - AluJb SINE Alu -185 127 2 30 27 0 0 chrX 9583181 9583218 -167390922 + AT_rich Low_complexity Low_complexity 1 37 0 2659 106 3 8 chrX 9583218 9583587 -167390553 - L1PB1 LINE L1 -3 6148 5782 1255 63 32 53 chrX 9583649 9583838 -167390302 - L1PB1 LINE L1 -360 5791 5607 459 269 64 19 chrX 9585267 9585423 -167388717 - MIR SINE MIR -16 246 84 342 173 376 8 chrX 9585426 9585559 -167388581 - MER5A DNA MER1_type 0 189 8 185 277 0 92 chrX 9585569 9585634 -167388506 - MIR SINE MIR -184 78 20 351 67 0 0 chrX 9585807 9585852 -167388288 - L1P5 LINE L1 -532 5619 5575 2276 94 108 6 chrX 9585881 9586242 -167387898 + LTR7 LTR ERV1 11 408 -42 423 0 0 0 chrX 9586244 9586291 -167387849 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 632 332 99 42 chrX 9586696 9587121 -167387019 + L1MC4a LINE L1 5521 5969 -1839 260 279 13 0 chrX 9587242 9587321 -167386819 - L1MC5 LINE L1 -73 7888 7809 180 0 0 0 chrX 9587379 9587399 -167386741 + (CA)n Simple_repeat Simple_repeat 1 20 0 438 286 83 62 chrX 9587565 9588230 -167385910 - L1M4 LINE L1 -3220 2926 2248 223 182 0 0 chrX 9589317 9589361 -167384779 + T-rich Low_complexity Low_complexity 1 44 0 32661 111 26 31 chrX 9589362 9595554 -167378586 - L1PA8 LINE L1 -2 6170 12 13590 158 30 45 chrX 9595567 9597322 -167376818 + HUERS-P3 LTR ERV1 3342 5121 -2167 460 16 0 31 chrX 9597322 9597386 -167376754 + L1PA2 LINE L1 6094 6155 0 13590 158 30 45 chrX 9597386 9599184 -167374956 + HUERS-P3 LTR ERV1 5121 6945 -343 932 153 17 6 chrX 9599192 9599368 -167374772 + HUERS-P3 LTR ERV1 2388 2565 -2450 1221 140 31 0 chrX 9599522 9599715 -167374425 + HUERS-P3 LTR ERV1 8720 8918 -1 2572 210 12 58 chrX 9599718 9600337 -167373803 + LTR9 LTR ERV1 4 581 -31 3848 117 0 8 chrX 9601375 9601890 -167372250 + MER9 LTR ERVK 1 511 0 225 235 74 0 chrX 9602204 9602285 -167371855 - PABL_A LTR ERV1 -152 508 422 204 250 0 0 chrX 9603000 9603064 -167371076 + (TG)n Simple_repeat Simple_repeat 2 65 0 274 231 22 44 chrX 9603064 9603155 -167370985 - L1MC4 LINE L1 -1339 6703 6615 936 227 19 0 chrX 9603192 9603399 -167370741 - L1MC1 LINE L1 -10 6323 6113 219 325 95 16 chrX 9604239 9604365 -167369775 + MIR SINE MIR 125 260 -2 1407 196 68 18 chrX 9604384 9604721 -167369419 - L1MA4 LINE L1 -6 6294 5941 2349 100 7 0 chrX 9605110 9605419 -167368721 + AluSq SINE Alu 1 311 -2 213 39 0 0 chrX 9606915 9606941 -167367199 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 3356 205 47 7 chrX 9607062 9607769 -167366371 + L1MC1 LINE L1 5589 6323 -10 784 205 66 0 chrX 9607776 9607942 -167366198 - MER53 DNA DNA -12 177 1 772 361 53 17 chrX 9608034 9608505 -167365635 + L3 LINE CR1 1049 1536 -41 1167 142 40 44 chrX 9608567 9608792 -167365348 - L1MB7 LINE L1 -16 6168 5945 2774 152 18 7 chrX 9609105 9609545 -167364595 - MER65A LTR ERV1 0 445 1 3807 119 2 0 chrX 9610486 9611015 -167363125 + LTR26B LTR ERV1 2 531 0 673 277 75 65 chrX 9611265 9611742 -167362398 - REP3 LTR ERV -33 529 48 234 359 13 0 chrX 9612554 9612632 -167361508 - L2 LINE L2 -1 3271 3193 231 278 113 15 chrX 9613015 9613148 -167360992 - LTR33A LTR ERVL -156 367 222 225 364 56 48 chrX 9613429 9613660 -167360480 - L2 LINE L2 -189 3124 2892 359 247 141 107 chrX 9613870 9614133 -167360007 - L2 LINE L2 0 3313 3042 23 54 0 0 chrX 9614167 9614204 -167359936 + AT_rich Low_complexity Low_complexity 1 37 0 189 317 174 6 chrX 9614448 9614609 -167359531 - L2 LINE L2 -275 3038 2851 735 207 0 22 chrX 9614759 9614894 -167359246 + FLAM_C SINE Alu 2 133 0 1383 174 50 43 chrX 9616055 9616370 -167357770 - AluJb SINE Alu 0 317 1 448 294 68 28 chrX 9616383 9616560 -167357580 + HsTC2 DNA Tc2 31 214 -1684 682 261 22 27 chrX 9616568 9616790 -167357350 + HsTC2 DNA Tc2 501 721 -1177 595 280 88 68 chrX 9616885 9617339 -167356801 + HERVL40 LTR ERVL 1150 1612 -3918 1891 267 56 14 chrX 9617340 9617910 -167356230 + HERVL40 LTR ERVL 2526 3119 -2411 270 303 83 18 chrX 9618462 9618571 -167355569 + L2 LINE L2 3198 3313 0 280 169 26 0 chrX 9619066 9619143 -167354997 + (TG)n Simple_repeat Simple_repeat 2 80 0 818 221 42 32 chrX 9619241 9619458 -167354682 + MER20 DNA MER1_type 1 219 0 418 266 55 0 chrX 9619538 9619666 -167354474 + MER5B DNA MER1_type 4 138 -40 2409 61 0 29 chrX 9619713 9620024 -167354116 + AluY SINE Alu 1 302 -9 207 0 0 0 chrX 9620346 9620369 -167353771 + (TAA)n Simple_repeat Simple_repeat 1 23 0 1906 147 24 3 chrX 9620464 9620781 -167353359 + AluSx SINE Alu 2 324 0 1494 12 0 0 chrX 9620843 9621004 -167353136 + L1PA2 LINE L1 5995 6155 0 369 167 0 0 chrX 9621099 9621177 -167352963 + CT-rich Low_complexity Low_complexity 1 78 0 216 333 21 21 chrX 9621575 9621671 -167352469 + L2 LINE L2 2154 2249 -1065 3322 104 17 0 chrX 9621747 9622207 -167351933 - L1PB1 LINE L1 -185 5966 5499 1048 154 0 17 chrX 9622210 9622385 -167351755 + L1PB1 LINE L1 5978 6149 -2 180 0 0 0 chrX 9622689 9622709 -167351431 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2082 112 14 0 chrX 9623112 9623406 -167350734 - AluSx SINE Alu -14 298 1 459 334 36 17 chrX 9623548 9623850 -167350290 - L1ME3A LINE L1 -338 5832 5525 759 182 15 30 chrX 9623860 9623992 -167350148 + FLAM_A SINE Alu 1 130 -3 327 359 5 10 chrX 9624188 9624386 -167349754 - L1ME3A LINE L1 -800 5346 5150 1784 119 3 102 chrX 9624406 9624772 -167349368 - AluY SINE Alu 0 311 1 428 289 50 39 chrX 9625861 9626041 -167348099 - MIR SINE MIR -64 198 17 380 270 67 105 chrX 9626900 9627029 -167347111 + L1MDa LINE L1 1828 1960 -4605 2503 68 3 3 chrX 9627029 9627337 -167346803 + AluSp SINE Alu 1 308 -5 380 270 67 105 chrX 9627337 9627492 -167346648 + L1MDa LINE L1 1960 2126 -4439 25 31 0 0 chrX 9627529 9627561 -167346579 + AT_rich Low_complexity Low_complexity 1 32 0 437 33 0 17 chrX 9627643 9627703 -167346437 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 886 185 90 19 chrX 9628341 9628517 -167345623 - AluJo SINE Alu 0 312 117 207 0 0 0 chrX 9628517 9628540 -167345600 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 886 185 90 19 chrX 9628540 9628574 -167345566 - AluJo SINE Alu -195 117 87 1748 68 119 12 chrX 9630524 9630811 -167343329 - AluSc SINE Alu 0 314 1 1821 169 0 22 chrX 9632168 9632487 -167341653 - AluJb SINE Alu 0 312 1 420 301 19 19 chrX 9632515 9632671 -167341469 + MER5A DNA MER1_type 9 164 -25 225 269 0 0 chrX 9632678 9632745 -167341395 + A-rich Low_complexity Low_complexity 1 67 0 21 36 0 0 chrX 9633370 9633398 -167340742 + AT_rich Low_complexity Low_complexity 1 28 0 2412 61 7 0 chrX 9633745 9634038 -167340102 + AluY SINE Alu 1 295 -16 1597 143 75 14 chrX 9634342 9634622 -167339518 - MER1B DNA MER1_type -1 338 42 307 284 189 0 chrX 9634626 9634721 -167339419 - MER45 DNA AcHobo -1468 113 1 180 0 0 0 chrX 9635585 9635605 -167338535 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chrX 9636418 9636439 -167337701 + GC_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chrX 9638645 9638666 -167335474 + (T)n Simple_repeat Simple_repeat 1 21 0 2279 86 23 0 chrX 9638685 9638987 -167335153 + AluSx SINE Alu 1 309 -3 315 241 12 0 chrX 9640042 9640125 -167334015 - MIR SINE MIR -26 236 153 1197 208 44 14 chrX 9640271 9640564 -167333576 - MER45B DNA AcHobo 0 1040 739 1389 310 107 34 chrX 9640659 9641343 -167332797 - MER45C DNA AcHobo -216 737 4 351 266 0 21 chrX 9642609 9642703 -167331437 - L1MC4 LINE L1 -1337 6705 6614 315 136 0 0 chrX 9642703 9642762 -167331378 + (TA)n Simple_repeat Simple_repeat 2 60 0 229 148 49 37 chrX 9643317 9643398 -167330742 + (TA)n Simple_repeat Simple_repeat 1 82 0 2174 129 0 3 chrX 9643404 9643714 -167330426 + AluSx SINE Alu 1 309 -3 434 311 49 16 chrX 9644221 9644404 -167329736 + MER5A DNA MER1_type 1 189 0 2469 97 0 0 chrX 9644409 9644719 -167329421 + AluY SINE Alu 1 310 -1 24 32 0 0 chrX 9644959 9644990 -167329150 + AT_rich Low_complexity Low_complexity 1 31 0 2633 55 0 6 chrX 9645156 9645467 -167328673 + AluY SINE Alu 1 309 -2 24 0 0 0 chrX 9645802 9645826 -167328314 + AT_rich Low_complexity Low_complexity 1 24 0 3483 160 14 29 chrX 9646458 9647107 -167327033 + MER41B LTR ERV1 1 467 -11 1681 192 31 7 chrX 9647545 9647836 -167326304 + AluJo SINE Alu 1 298 -14 2024 131 3 32 chrX 9648726 9649064 -167325076 + AluSx SINE Alu 1 312 0 181 353 17 26 chrX 9649847 9649963 -167324177 - L2 LINE L2 0 3313 3199 1781 193 41 131 chrX 9652157 9652819 -167321321 + L1MC4 LINE L1 7299 7900 -142 256 219 24 0 chrX 9652823 9652905 -167321235 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 213 219 0 0 chrX 9652939 9652980 -167321160 + A-rich Low_complexity Low_complexity 2 42 0 973 188 45 6 chrX 9652996 9653172 -167320968 + MER58A DNA MER1_type 4 186 -38 37 52 0 0 chrX 9653259 9653317 -167320823 + AT_rich Low_complexity Low_complexity 1 58 0 832 203 91 0 chrX 9656080 9656267 -167317873 + MER3 DNA MER1_type 1 204 -5 280 230 40 0 chrX 9656725 9656799 -167317341 + LTR33A LTR ERVL 444 520 -3 1845 220 26 38 chrX 9660619 9661124 -167313016 + L1MB8 LINE L1 5680 6178 0 199 195 24 0 chrX 9661410 9661451 -167312689 + MER5A DNA MER1_type 145 186 -3 4576 118 63 34 chrX 9661970 9662727 -167311413 + MER4E LTR ERV1 1 779 0 5901 102 26 21 chrX 9662804 9663661 -167310479 + MER4D LTR ERV1 12 872 0 1550 118 45 115 chrX 9664208 9664522 -167309618 - AluSq SINE Alu -21 292 1 1037 70 7 42 chrX 9664524 9664666 -167309474 - AluSq/x SINE Alu -169 143 7 923 163 0 7 chrX 9664766 9664913 -167309227 - AluJb SINE Alu -23 289 144 2067 146 0 3 chrX 9665233 9665534 -167308606 + AluSx SINE Alu 6 305 -7 779 212 98 20 chrX 9665672 9665875 -167308265 - MER20 DNA MER1_type 0 219 1 2208 113 10 0 chrX 9666757 9667058 -167307082 + AluSq SINE Alu 1 304 -9 250 316 0 43 chrX 9667889 9668006 -167306134 - MIR SINE MIR -67 141 30 608 191 84 0 chrX 9668406 9668537 -167305603 + MER69 DNA AcHobo 6 147 -1079 1705 136 0 12 chrX 9669057 9669307 -167304833 + AluSq SINE Alu 44 290 -23 1595 168 9 58 chrX 9670514 9670841 -167303299 - AluJo SINE Alu -1 311 1 180 0 0 0 chrX 9671424 9671444 -167302696 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2094 136 0 0 chrX 9671447 9671734 -167302406 - AluSx SINE Alu -25 287 1 309 185 123 0 chrX 9672043 9672124 -167302016 + L2 LINE L2 2450 2540 -774 * 407 319 91 38 chrX 9672103 9672445 -167301695 + L2 LINE L2 2953 3312 -1 945 217 61 114 chrX 9673336 9673572 -167300568 + MER58B DNA MER1_type 1 213 -2207 3554 128 0 26 chrX 9673572 9674112 -167300028 - MER1A DNA MER1_type -1 526 1 945 217 61 114 chrX 9674112 9674235 -167299905 + MER58B DNA MER1_type 213 341 0 257 258 15 0 chrX 9674914 9674980 -167299160 + MIR SINE MIR 94 160 -102 764 289 94 61 chrX 9675459 9675982 -167298158 + MER77 LTR ERV1 55 594 -11 2387 87 10 0 chrX 9676046 9676345 -167297795 - AluSg SINE Alu -8 302 1 440 284 49 49 chrX 9676522 9676705 -167297435 - LTR16C LTR ERVL -229 262 80 1606 152 3 91 chrX 9677384 9677525 -167296615 + AluJo SINE Alu 1 102 -210 2285 88 10 10 chrX 9677525 9677822 -167296318 + AluSg SINE Alu 1 297 -13 1606 152 3 91 chrX 9677822 9677989 -167296151 + AluJo SINE Alu 102 282 -30 866 123 19 9 chrX 9677989 9678209 -167295931 + CT-rich Low_complexity Low_complexity 1 222 0 2123 141 13 0 chrX 9678209 9678507 -167295633 - AluSx SINE Alu -10 302 1 820 135 0 30 chrX 9679071 9679204 -167294936 + FLAM_C SINE Alu 1 129 -4 1395 158 4 4 chrX 9679547 9679775 -167294365 - MLT1B LTR MaLR -4 386 159 2280 140 17 13 chrX 9679776 9680165 -167293975 - MLT1B LTR MaLR 0 396 1 1667 194 3 50 chrX 9680766 9680802 -167293338 - MER58B DNA MER1_type -2094 326 290 684 257 41 0 chrX 9680802 9680973 -167293167 + MER45A DNA AcHobo 1 178 0 1667 194 3 50 chrX 9680973 9681105 -167293035 - MER58B DNA MER1_type -2130 290 153 1758 171 138 31 chrX 9681105 9681318 -167292822 + MLT1C LTR MaLR 1 190 -277 2171 91 35 7 chrX 9681318 9681633 -167292507 + AluSq SINE Alu 1 323 0 1758 171 138 31 chrX 9681633 9681837 -167292303 + MLT1C LTR MaLR 190 465 -2 1667 194 3 50 chrX 9681837 9682008 -167292132 - MER58B DNA MER1_type -2267 153 2 2771 79 94 0 chrX 9682376 9682768 -167291372 + L1PA10 LINE L1 5728 6156 -12 2443 60 0 10 chrX 9682769 9683071 -167291069 - AluY SINE Alu -12 299 1 186 43 0 0 chrX 9683162 9683185 -167290955 + (CA)n Simple_repeat Simple_repeat 1 23 0 754 296 60 3 chrX 9683590 9683907 -167290233 + L1MC4 LINE L1 6814 7148 -894 1558 178 32 41 chrX 9684498 9684813 -167289327 + AluJo SINE Alu 1 312 0 207 0 0 0 chrX 9685861 9685884 -167288256 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 609 233 0 0 chrX 9685913 9686033 -167288107 - FLAM_A SINE Alu -17 125 6 186 298 0 0 chrX 9686435 9686482 -167287658 + MIR SINE MIR 17 63 -199 2775 87 3 0 chrX 9686615 9686984 -167287156 - L1PB1 LINE L1 0 6151 5782 327 198 33 44 chrX 9686981 9687072 -167287068 - L1MC4 LINE L1 -1339 6703 6614 * 395 104 23 63 chrX 9686984 9687169 -167286971 + (TA)n Simple_repeat Simple_repeat 1 177 0 * 547 158 0 10 chrX 9687143 9687264 -167286876 - L1M1 LINE L1 -361 5790 5699 1224 225 70 0 chrX 9687772 9688088 -167286052 + L1MC2 LINE L1 5949 6286 -58 463 307 135 58 chrX 9689206 9689770 -167284370 + L2 LINE L2 2200 2806 -508 181 392 0 13 chrX 9689823 9689902 -167284238 + L2 LINE L2 2911 2988 -325 263 112 17 69 chrX 9690166 9690282 -167283858 + (TA)n Simple_repeat Simple_repeat 1 110 0 1470 139 64 0 chrX 9690375 9690655 -167283485 - L1MA8 LINE L1 -7 6284 5987 351 121 0 0 chrX 9690724 9690782 -167283358 + (CA)n Simple_repeat Simple_repeat 2 59 0 1641 81 36 0 chrX 9693072 9693294 -167280846 + MER30 DNA MER1_type 1 230 0 22 0 0 0 chrX 9693482 9693504 -167280636 + AT_rich Low_complexity Low_complexity 1 22 0 2987 82 12 0 chrX 9694278 9694683 -167279457 - L1PA10 LINE L1 -4 6164 5755 479 259 14 66 chrX 9695588 9695707 -167278433 + MER3 DNA MER1_type 4 109 -100 960 180 22 59 chrX 9695707 9695929 -167278211 - MER20 DNA MER1_type -4 215 2 479 259 14 66 chrX 9695929 9696021 -167278119 + MER3 DNA MER1_type 109 204 -5 911 90 8 8 chrX 9696043 9696177 -167277963 + L1MA1 LINE L1 6167 6300 -2 21 0 0 0 chrX 9697025 9697046 -167277094 + AT_rich Low_complexity Low_complexity 1 21 0 269 289 112 20 chrX 9697117 9697269 -167276871 + MIR SINE MIR 20 185 -77 26 0 0 0 chrX 9697809 9697835 -167276305 + AT_rich Low_complexity Low_complexity 1 26 0 587 179 24 0 chrX 9697854 9697977 -167276163 + L1MB3 LINE L1 5869 5994 -189 1172 116 6 0 chrX 9698167 9698348 -167275792 + L1MB2 LINE L1 5941 6122 -49 291 164 18 27 chrX 9698356 9698444 -167275696 - MER5A DNA MER1_type -99 90 4 2208 85 7 14 chrX 9698481 9698764 -167275376 + AluSx SINE Alu 25 305 -7 22 0 0 0 chrX 9698775 9698797 -167275343 + AT_rich Low_complexity Low_complexity 1 22 0 429 176 0 0 chrX 9698797 9698871 -167275269 - AluJ/FRAM SINE Alu -12 300 227 1050 226 49 84 chrX 9699358 9699907 -167274233 + MER34 LTR ERV1 4 533 -9 249 33 0 0 chrX 9700933 9700963 -167273177 + (CA)n Simple_repeat Simple_repeat 1 30 0 460 281 51 34 chrX 9701016 9701194 -167272946 - MIR SINE MIR -17 245 65 697 233 0 6 chrX 9701490 9701653 -167272487 + MER5A DNA MER1_type 26 187 -2 25 31 0 0 chrX 9701876 9701908 -167272232 + AT_rich Low_complexity Low_complexity 1 32 0 996 123 11 11 chrX 9704059 9704238 -167269902 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 338 184 13 0 chrX 9704238 9704314 -167269826 + GA-rich Low_complexity Low_complexity 3 79 0 2034 120 3 7 chrX 9705249 9705541 -167268599 + AluSx SINE Alu 1 291 -21 23 0 0 0 chrX 9705541 9705564 -167268576 + AT_rich Low_complexity Low_complexity 1 23 0 264 30 0 0 chrX 9706004 9706037 -167268103 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 324 0 0 0 chrX 9706172 9706208 -167267932 + (CA)n Simple_repeat Simple_repeat 2 37 0 202 262 0 33 chrX 9707799 9707860 -167266280 + T-rich Low_complexity Low_complexity 5 63 0 1511 179 45 4 chrX 9707993 9708113 -167266027 + AluJb SINE Alu 1 115 -197 207 0 0 0 chrX 9708113 9708136 -167266004 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1511 179 45 4 chrX 9708136 9708283 -167265857 + AluJb SINE Alu 115 279 -33 419 133 0 0 chrX 9708283 9708343 -167265797 - LTR7 LTR ERV1 0 450 391 222 37 0 0 chrX 9708365 9708392 -167265748 + (GA)n Simple_repeat Simple_repeat 2 28 0 2183 80 0 0 chrX 9709654 9709916 -167264224 - AluSg SINE Alu -14 296 35 605 199 79 105 chrX 9709924 9710078 -167264062 - LTR37A LTR ERV1 -14 454 297 417 39 0 0 chrX 9710078 9710129 -167264011 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 605 199 79 105 chrX 9710129 9710306 -167263834 - LTR37A LTR ERV1 -171 297 88 1326 235 37 3 chrX 9710658 9710986 -167263154 + MER58B DNA MER1_type 2 340 -1 298 254 37 15 chrX 9711029 9711140 -167263000 + LTR48B LTR ERV1 1 108 -514 860 218 58 72 chrX 9711187 9711565 -167262575 + MER39 LTR ERV1 330 584 -1 265 369 10 10 chrX 9711773 9711876 -167262264 + MIR3 SINE MIR 91 193 -15 1993 115 49 0 chrX 9712312 9712600 -167261540 - AluSc SINE Alu -7 302 1 203 290 72 29 chrX 9712694 9712763 -167261377 + L2 LINE L2 3192 3263 -9 2157 127 3 0 chrX 9712965 9713265 -167260875 + AluSq SINE Alu 1 301 -12 2054 126 0 0 chrX 9713608 9713894 -167260246 + AluSx SINE Alu 1 286 -26 180 0 0 0 chrX 9714278 9714298 -167259842 + (A)n Simple_repeat Simple_repeat 1 20 0 743 273 87 72 chrX 9714603 9715061 -167259079 - MLT1J LTR MaLR -45 466 2 193 256 0 0 chrX 9715108 9715151 -167258989 + L2 LINE L2 3210 3252 -20 1110 199 19 5 chrX 9715238 9715454 -167258686 - MER20 DNA MER1_type 0 219 1 1553 113 0 5 chrX 9715622 9715844 -167258296 + AluSg/x SINE Alu 83 303 -7 493 282 77 29 chrX 9715904 9716177 -167257963 - L2 LINE L2 -529 2785 2500 435 255 62 0 chrX 9718098 9718243 -167255897 + L1MD2 LINE L1 6194 6347 -12 21 0 0 0 chrX 9718383 9718404 -167255736 + AT_rich Low_complexity Low_complexity 1 21 0 1918 141 160 19 chrX 9718745 9719120 -167255020 - MSTA LTR MaLR 0 428 1 260 398 0 0 chrX 9719161 9719279 -167254861 + MIR SINE MIR 84 201 -61 2306 101 3 3 chrX 9719305 9719612 -167254528 + AluSq SINE Alu 1 307 -6 1373 149 108 46 chrX 9719955 9720344 -167253796 - L1MB7 LINE L1 -8 6176 5764 238 338 78 7 chrX 9721996 9722150 -167251990 - MIR SINE MIR -29 233 69 2705 91 11 3 chrX 9722491 9722852 -167251288 + THE1B LTR MaLR 1 364 0 180 295 53 11 chrX 9723281 9723376 -167250764 + MIR SINE MIR 164 262 0 1630 117 40 7 chrX 9725038 9725311 -167248829 + L1MC1 LINE L1 6051 6332 -1 242 325 36 73 chrX 9725543 9725845 -167248295 + L2 LINE L2 3023 3313 0 23 54 0 0 chrX 9726074 9726111 -167248029 + AT_rich Low_complexity Low_complexity 1 37 0 1055 187 0 0 chrX 9726157 9726355 -167247785 - MER2 DNA MER2_type -107 238 41 2139 129 0 0 chrX 9726522 9726825 -167247315 + AluSg SINE Alu 1 303 -7 7191 43 4 6 chrX 9726877 9727856 -167246284 + L1PA7 LINE L1 5177 6154 0 298 131 18 0 chrX 9727860 9727923 -167246217 + L1M1 LINE L1 5769 5837 -317 648 141 0 0 chrX 9728053 9728152 -167245988 - AluSg/x SINE Alu -9 303 205 2447 74 0 0 chrX 9728510 9728808 -167245332 - AluY SINE Alu -13 298 1 193 314 0 0 chrX 9729873 9729924 -167244216 - MIR3 SINE MIR -49 159 109 1650 199 89 28 chrX 9730600 9731028 -167243112 - MLT1C LTR MaLR -7 460 7 531 314 64 6 chrX 9731945 9732117 -167242023 + MER5A DNA MER1_type 1 182 -7 2549 77 0 0 chrX 9732180 9732491 -167241649 - AluSx SINE Alu -1 311 1 1598 157 23 47 chrX 9733849 9734148 -167239992 - AluJo SINE Alu -16 296 5 583 205 27 0 chrX 9734352 9734464 -167239676 - FLAM_A SINE Alu -17 125 11 257 67 0 44 chrX 9735437 9735482 -167238658 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 629 182 28 45 chrX 9735523 9735699 -167238441 + MER20 DNA MER1_type 47 219 0 242 194 48 0 chrX 9736213 9736275 -167237865 + GA-rich Low_complexity Low_complexity 2 66 0 836 126 0 44 chrX 9736307 9736442 -167237698 + FLAM_C SINE Alu 1 129 -4 1274 166 9 14 chrX 9736446 9736669 -167237471 + AluJo SINE Alu 87 308 -4 820 190 6 13 chrX 9736781 9736939 -167237201 - FRAM SINE Alu -19 157 1 2025 123 0 0 chrX 9737991 9738259 -167235881 - AluSx SINE Alu -44 268 1 1379 189 9 84 chrX 9739198 9739520 -167234620 + AluJo SINE Alu 1 298 -14 272 256 58 0 chrX 9739965 9740051 -167234089 + MIR SINE MIR 118 208 -54 4862 81 59 4 chrX 9740792 9741153 -167232987 - L1PB1 LINE L1 -7 6144 5804 321 26 0 0 chrX 9741153 9741191 -167232949 + (CA)n Simple_repeat Simple_repeat 2 39 0 4862 81 59 4 chrX 9741191 9741507 -167232633 - L1PB1 LINE L1 -347 5804 5430 2325 164 12 16 chrX 9741507 9742082 -167232058 + L1PB1 LINE L1 4860 5434 -717 815 265 65 58 chrX 9742856 9743256 -167230884 - LTR16A1 LTR ERVL 0 457 55 972 136 0 4 chrX 9744089 9744346 -167229794 + (TA)n Simple_repeat Simple_repeat 1 257 0 1389 310 107 34 chrX 9745614 9746298 -167227842 + MER45C DNA AcHobo 4 737 -216 1197 208 44 14 chrX 9746393 9746686 -167227454 + MER45B DNA AcHobo 739 1040 0 315 241 12 0 chrX 9746832 9746915 -167227225 + MIR SINE MIR 153 236 -26 2266 89 23 0 chrX 9747970 9748272 -167225868 - AluSx SINE Alu -3 309 1 243 0 0 0 chrX 9748291 9748318 -167225822 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chrX 9750526 9750547 -167223593 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chrX 9751360 9751380 -167222760 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 306 284 189 0 chrX 9752244 9752339 -167221801 + MER45 DNA AcHobo 1 113 -1468 1588 146 75 14 chrX 9752343 9752623 -167221517 + MER1B DNA MER1_type 42 338 -1 2443 61 7 0 chrX 9752927 9753220 -167220920 - AluY SINE Alu -16 295 1 21 36 0 0 chrX 9753567 9753595 -167220545 + AT_rich Low_complexity Low_complexity 1 28 0 225 269 0 0 chrX 9754220 9754287 -167219853 + T-rich Low_complexity Low_complexity 1 67 0 369 301 19 19 chrX 9754294 9754450 -167219690 - MER5A DNA MER1_type -25 164 9 1842 169 0 22 chrX 9754478 9754797 -167219343 + AluJb SINE Alu 1 312 0 1783 68 119 12 chrX 9756154 9756441 -167217699 + AluSc SINE Alu 1 314 0 892 185 90 19 chrX 9758391 9758425 -167215715 + AluJo SINE Alu 87 117 -195 207 0 0 0 chrX 9758425 9758448 -167215692 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 892 185 90 19 chrX 9758448 9758624 -167215516 + AluJo SINE Alu 117 312 0 473 31 0 16 chrX 9759262 9759326 -167214814 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 25 31 0 0 chrX 9759408 9759440 -167214700 + AT_rich Low_complexity Low_complexity 1 32 0 339 297 29 106 chrX 9759493 9759632 -167214508 - L1MEc LINE L1 -4595 1801 1688 2524 68 3 3 chrX 9759632 9759940 -167214200 - AluSp SINE Alu -5 308 1 339 297 29 106 chrX 9759940 9760046 -167214094 - L1MEc LINE L1 -4708 1688 1575 377 289 50 39 chrX 9760928 9761108 -167213032 + MIR SINE MIR 17 198 -64 2038 102 3 94 chrX 9762197 9762561 -167211579 + AluSx SINE Alu 1 312 0 300 359 5 10 chrX 9762581 9762779 -167211361 + L1ME3A LINE L1 5150 5346 -800 704 187 15 30 chrX 9762973 9763107 -167211033 - FLAM_A SINE Alu -1 132 1 451 334 36 17 chrX 9763117 9763419 -167210721 + L1ME3A LINE L1 5525 5832 -338 2099 112 14 0 chrX 9763561 9763855 -167210285 + AluSx SINE Alu 1 298 -14 180 0 0 0 chrX 9764258 9764278 -167209862 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 992 154 0 17 chrX 9764582 9764757 -167209383 - L1PB1 LINE L1 -2 6149 5978 3310 104 17 0 chrX 9764760 9765220 -167208920 + L1PB1 LINE L1 5499 5966 -185 196 333 21 21 chrX 9765296 9765392 -167208748 - L2 LINE L2 -1065 2249 2154 369 167 0 0 chrX 9765790 9765868 -167208272 + GA-rich Low_complexity Low_complexity 1 78 0 1429 12 0 0 chrX 9765963 9766124 -167208016 - L1PA2 LINE L1 0 6155 5995 1927 147 24 3 chrX 9766186 9766503 -167207637 - AluSx SINE Alu 0 324 2 207 0 0 0 chrX 9766598 9766621 -167207519 + (TTA)n Simple_repeat Simple_repeat 1 23 0 2436 61 0 29 chrX 9766943 9767254 -167206886 - AluY SINE Alu -9 302 1 377 266 55 0 chrX 9767301 9767429 -167206711 - MER5B DNA MER1_type -40 138 4 749 221 42 32 chrX 9767509 9767726 -167206414 - MER20 DNA MER1_type 0 219 1 280 169 26 0 chrX 9767824 9767901 -167206239 + (CA)n Simple_repeat Simple_repeat 2 80 0 238 303 83 18 chrX 9768396 9768505 -167205635 - L2 LINE L2 0 3313 3198 1915 267 56 14 chrX 9769057 9769627 -167204513 - HERVL40 LTR ERVL -2411 3119 2526 604 286 84 64 chrX 9769628 9770082 -167204058 - HERVL40 LTR ERVL -3918 1612 1150 675 261 22 27 chrX 9770177 9770399 -167203741 - HsTC2 DNA Tc2 -1177 721 501 446 294 68 28 chrX 9770407 9770584 -167203556 - HsTC2 DNA Tc2 -1684 214 31 1394 174 50 43 chrX 9770597 9770912 -167203228 + AluJb SINE Alu 1 317 0 687 207 0 22 chrX 9772073 9772208 -167201932 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chrX 9822755 9822776 -167151364 + AT_rich Low_complexity Low_complexity 1 21 0 212 224 17 35 chrX 9824999 9825057 -167149083 + MIR SINE MIR 113 169 -93 1263 202 0 0 chrX 9825156 9825379 -167148761 + MER58A DNA MER1_type 2 224 0 250 345 76 17 chrX 9825553 9825672 -167148468 + MIR3 SINE MIR 60 185 -23 438 20 0 0 chrX 9825727 9825753 -167148387 + (TG)n Simple_repeat Simple_repeat 1 77 0 438 20 0 0 chrX 9825753 9825804 -167148336 + (TG)n Simple_repeat Simple_repeat 2 52 0 1711 201 0 22 chrX 9826132 9826450 -167147690 - AluJo SINE Alu -1 311 1 607 224 7 41 chrX 9827215 9827362 -167146778 - L2 LINE L2 0 3313 3172 1221 61 0 6 chrX 9827383 9827546 -167146594 - MLT2A2 LTR ERVL 0 453 292 2090 101 7 3 chrX 9827593 9827900 -167146240 - MLT2A2 LTR ERVL -145 308 1 1635 272 135 59 chrX 9828013 9828909 -167145231 - L2 LINE L2 -299 3014 2036 2141 124 3 13 chrX 9828909 9829215 -167144925 + AluSx SINE Alu 1 303 -9 1635 272 135 59 chrX 9829215 9829300 -167144840 - L2 LINE L2 -1277 2036 1959 3862 83 29 9 chrX 9829588 9830145 -167143995 + L1PA11 LINE L1 5606 6173 -1 1883 161 3 3 chrX 9831133 9831438 -167142702 - AluJb SINE Alu -3 309 5 2479 64 0 0 chrX 9832613 9832911 -167141229 - AluY SINE Alu -13 298 1 1939 134 44 0 chrX 9833422 9833720 -167140420 - AluJo SINE Alu -1 311 1 239 0 0 31 chrX 9834437 9834469 -167139671 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 2168 83 0 0 chrX 9834473 9834738 -167139402 - AluSx SINE Alu -25 287 23 297 240 20 40 chrX 9835723 9835873 -167138267 + (TA)n Simple_repeat Simple_repeat 1 147 0 330 195 0 0 chrX 9835873 9835950 -167138190 + (CA)n Simple_repeat Simple_repeat 2 78 0 1245 312 71 10 chrX 9836289 9836799 -167137341 + L2 LINE L2 2171 2711 -603 248 314 202 39 chrX 9837796 9838469 -167135671 + L2 LINE L2 1709 2491 -823 928 88 0 0 chrX 9840031 9840348 -167133792 + AluSx SINE Alu 1 317 0 865 151 0 0 chrX 9840525 9840651 -167133489 + FLAM_C SINE Alu 1 126 -17 2259 57 0 54 chrX 9840657 9840987 -167133153 + AluY SINE Alu 1 314 0 788 171 16 144 chrX 9841656 9841913 -167132227 + MER58A DNA MER1_type 1 224 0 545 254 8 0 chrX 9842014 9842132 -167132008 + FLAM_A SINE Alu 11 129 -13 202 231 0 39 chrX 9843213 9843265 -167130875 + L2 LINE L2 3199 3248 -24 20057 78 19 1 chrX 9843960 9847662 -167126478 - L1PA7 LINE L1 -23 6446 2680 206 118 0 0 chrX 9847684 9847718 -167126422 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2558 115 30 2 chrX 9847718 9848118 -167126022 - L1PA7 LINE L1 -6043 418 8 31 26 0 0 chrX 9848606 9848644 -167125496 + AT_rich Low_complexity Low_complexity 1 38 0 231 251 105 26 chrX 9849059 9849250 -167124890 - HsTC2 DNA Tc2 -104 1794 1589 297 127 91 0 chrX 9849280 9849335 -167124805 - HsTC2 DNA Tc2 -548 1350 1291 67 102 0 0 chrX 9849335 9849570 -167124570 + AT_rich Low_complexity Low_complexity 1 235 0 1214 279 87 19 chrX 9849616 9850237 -167123903 - L1ME3A LINE L1 -182 5988 5326 2221 116 0 0 chrX 9850289 9850581 -167123559 - AluSx SINE Alu -20 292 1 270 45 45 0 chrX 9850654 9850698 -167123442 - AluSq SINE Alu -7 296 251 1482 117 24 5 chrX 9850698 9850911 -167123229 - AluSq SINE Alu -96 217 1 1231 267 107 36 chrX 9850918 9851062 -167123078 - L1ME3A LINE L1 -983 5163 5031 2480 125 14 3 chrX 9851062 9851422 -167122718 - THE1B LTR MaLR 0 364 1 1231 267 107 36 chrX 9851422 9852500 -167121640 - L1ME3A LINE L1 -1115 5031 3854 292 275 0 0 chrX 9852518 9852598 -167121542 + MIR SINE MIR 161 240 -22 239 250 0 0 chrX 9852949 9852997 -167121143 + (CATA)n Simple_repeat Simple_repeat 1 48 0 2247 77 11 0 chrX 9854257 9854543 -167119597 + AluSg SINE Alu 1 289 -21 276 322 46 11 chrX 9854621 9854708 -167119432 - L2 LINE L2 -31 3282 3193 453 294 0 0 chrX 9855269 9855395 -167118745 + MER94 DNA DNA 5 130 -4 269 344 46 23 chrX 9855549 9855680 -167118460 - L2 LINE L2 -954 2360 2227 231 114 0 0 chrX 9856838 9856882 -167117258 + (CCTG)n Simple_repeat Simple_repeat 2 45 0 445 156 21 10 chrX 9856882 9856978 -167117162 + CT-rich Low_complexity Low_complexity 2 98 0 1830 140 0 92 chrX 9856989 9857180 -167116960 - AluJo SINE Alu 0 312 164 2302 94 19 0 chrX 9857180 9857487 -167116653 - AluSp SINE Alu 0 313 1 1830 140 0 92 chrX 9857487 9857630 -167116510 - AluJo SINE Alu -148 164 9 380 287 52 9 chrX 9857841 9857956 -167116184 - L2 LINE L2 -5 3308 3189 2279 126 0 0 chrX 9858380 9858690 -167115450 - AluSq SINE Alu -3 310 1 300 393 15 15 chrX 9859116 9859251 -167114889 - L2 LINE L2 0 3272 3138 1216 214 81 27 chrX 9859412 9859782 -167114358 + MLT1D LTR MaLR 116 505 0 202 243 54 63 chrX 9859784 9859895 -167114245 - MIR SINE MIR -68 194 85 219 253 38 164 chrX 9860338 9860477 -167113663 + L2 LINE L2 2855 3010 -303 593 253 79 0 chrX 9860477 9860667 -167113473 - MER3 DNA MER1_type -4 205 1 219 253 38 164 chrX 9860667 9860822 -167113318 + L2 LINE L2 3010 3077 -236 2306 73 6 49 chrX 9860822 9861149 -167112991 - AluSq SINE Alu 0 313 1 219 253 38 164 chrX 9861149 9861299 -167112841 + L2 LINE L2 3077 3244 -69 324 0 0 0 chrX 9864486 9864522 -167109618 + (CA)n Simple_repeat Simple_repeat 2 37 0 695 180 9 0 chrX 9864531 9864642 -167109498 - FLAM_A SINE Alu -30 112 1 810 188 0 0 chrX 9865937 9866070 -167108070 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chrX 9867511 9867532 -167106608 + AT_rich Low_complexity Low_complexity 1 21 0 291 267 20 0 chrX 9868178 9868324 -167105816 + CT-rich Low_complexity Low_complexity 3 151 0 273 197 0 0 chrX 9870544 9870605 -167103535 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 40 21 0 0 chrX 9871528 9871575 -167102565 + AT_rich Low_complexity Low_complexity 1 47 0 35 0 0 0 chrX 9871686 9871721 -167102419 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chrX 9871815 9871850 -167102290 + AT_rich Low_complexity Low_complexity 1 35 0 1055 174 38 19 chrX 9872320 9872532 -167101608 - MER20 DNA MER1_type -3 216 1 814 154 0 29 chrX 9873438 9873574 -167100566 + FLAM_A SINE Alu 1 132 -1 1440 173 13 23 chrX 9874068 9874368 -167099772 - L1PB4 LINE L1 -76 6080 5784 1322 139 46 8 chrX 9874367 9874605 -167099535 + L1PB4 LINE L1 5519 5765 -391 * 2183 93 101 58 chrX 9874608 9875025 -167099115 - LTR49 LTR ERV1 -160 435 1 2297 36 79 0 chrX 9875544 9875821 -167098319 - AluY SINE Alu -12 299 1 1551 168 58 21 chrX 9875847 9876138 -167098002 + AluJo SINE Alu 1 302 -10 194 291 175 10 chrX 9876176 9876279 -167097861 + MIR SINE MIR 101 220 -42 306 0 0 0 chrX 9876283 9876317 -167097823 + (TG)n Simple_repeat Simple_repeat 2 35 0 5789 114 9 6 chrX 9876334 9877404 -167096736 + L1PA13 LINE L1 5098 6163 0 222 37 0 0 chrX 9878046 9878073 -167096067 + (TC)n Simple_repeat Simple_repeat 2 28 0 1036 160 12 72 chrX 9878086 9878336 -167095804 - L1MD2 LINE L1 -14 6345 6111 394 309 77 24 chrX 9878876 9879044 -167095096 + MER5B DNA MER1_type 1 177 -1 569 298 77 25 chrX 9879745 9879894 -167094246 - MIR SINE MIR -4 258 91 2248 87 30 0 chrX 9879894 9880192 -167093948 + AluSx SINE Alu 1 307 -5 569 298 77 25 chrX 9880192 9880277 -167093863 - MIR SINE MIR -171 91 12 304 209 68 25 chrX 9880457 9880620 -167093520 + (TATATG)n Simple_repeat Simple_repeat 3 172 0 203 318 15 15 chrX 9880753 9880819 -167093321 - MER5B DNA MER1_type -111 67 2 21 0 0 0 chrX 9881512 9881533 -167092607 + AT_rich Low_complexity Low_complexity 1 21 0 1941 116 0 65 chrX 9882677 9883032 -167091108 - MER4E LTR ERV1 0 779 448 559 122 0 0 chrX 9883032 9883114 -167091026 + AluJ/FRAM SINE Alu 216 297 -15 2125 171 40 33 chrX 9883125 9883575 -167090565 - MER4E LTR ERV1 -326 453 1 2193 171 72 100 chrX 9883867 9884557 -167089583 + MER50 LTR ERV1 10 680 -54 2444 119 119 0 chrX 9884560 9884948 -167089192 + MER57B LTR ERV1 1 434 0 23 0 0 0 chrX 9885510 9885533 -167088607 + AT_rich Low_complexity Low_complexity 1 23 0 2600 149 4 28 chrX 9885533 9886037 -167088103 - L1MA3 LINE L1 0 6305 5814 4933 104 3 19 chrX 9886043 9886569 -167087571 - L1MA2 LINE L1 0 6304 5792 1496 89 181 16 chrX 9886569 9886817 -167087323 - AluSc SINE Alu -10 289 1 4933 104 3 19 chrX 9886817 9887048 -167087092 - L1MA2 LINE L1 -512 5792 5559 934 233 116 33 chrX 9887297 9887679 -167086461 - MLT1D LTR MaLR -7 498 88 8199 71 5 9 chrX 9887971 9889047 -167085093 - MER11C LTR ERVK 0 1071 1 456 309 42 30 chrX 9889064 9889232 -167084908 - MIR SINE MIR -31 231 62 297 321 0 15 chrX 9889393 9889524 -167084616 + Charlie2 DNA MER1_type 171 299 -2563 278 291 58 0 chrX 9889627 9889730 -167084410 + Charlie2 DNA MER1_type 369 477 -2305 2229 90 6 51 chrX 9890385 9890697 -167083443 - AluSg SINE Alu -12 298 1 370 243 29 70 chrX 9891346 9891618 -167082522 - Charlie7 DNA MER1_type -3 2609 2349 * 808 311 65 38 chrX 9891617 9892279 -167081861 - Charlie7 DNA MER1_type -1874 738 59 203 88 29 0 chrX 9892867 9892901 -167081239 + (TTTTC)n Simple_repeat Simple_repeat 3 37 0 411 106 24 24 chrX 9894537 9894622 -167079518 + CT-rich Low_complexity Low_complexity 1 85 0 1787 185 3 6 chrX 9894627 9894940 -167079200 - AluJo SINE Alu 0 312 1 2706 118 8 98 chrX 9894949 9895424 -167078716 + MER4B LTR ERV1 1 571 -208 183 42 0 0 chrX 9895424 9895448 -167078692 + (TTATG)n Simple_repeat Simple_repeat 1 24 0 2706 118 8 98 chrX 9895448 9895640 -167078500 + MER4B LTR ERV1 571 779 0 1723 181 10 7 chrX 9896002 9896306 -167077834 + AluSx SINE Alu 5 309 -3 362 281 130 80 chrX 9898282 9898834 -167075306 - L1M4 LINE L1 -1692 4454 3875 228 333 31 0 chrX 9899036 9899165 -167074975 - L1M4 LINE L1 -2493 3653 3521 4946 75 42 31 chrX 9899357 9900064 -167074076 - SVA Other Other 0 1386 672 697 276 115 57 chrX 9900076 9900641 -167073499 - L1M4 LINE L1 -2809 3337 2740 1908 154 7 7 chrX 9900708 9901007 -167073133 + AluSx SINE Alu 1 299 -13 666 335 44 25 chrX 9901148 9901554 -167072586 + LTR16C LTR ERVL 74 487 -4 727 154 19 23 chrX 9903023 9903413 -167070727 + CT-rich Low_complexity Low_complexity 1 388 0 181 136 23 23 chrX 9903434 9903478 -167070662 + CT-rich Low_complexity Low_complexity 2 45 0 249 250 17 0 chrX 9903480 9903540 -167070600 + C-rich Low_complexity Low_complexity 3 63 0 1194 146 30 43 chrX 9903612 9903845 -167070295 + MER30 DNA MER1_type 1 230 0 2239 83 20 10 chrX 9904591 9904915 -167069225 + AluSp SINE Alu 1 313 0 633 260 119 102 chrX 9906927 9907446 -167066694 + MLT1F1 LTR MaLR 10 562 -5 3471 139 13 95 chrX 9907446 9907715 -167066425 - MER44D DNA MER2_type -1882 705 415 2447 83 32 29 chrX 9907715 9908089 -167066051 + THE1C LTR MaLR 1 375 0 3471 139 13 95 chrX 9908089 9908587 -167065553 - MER44D DNA MER2_type -2172 415 1 267 286 17 76 chrX 9908896 9908978 -167065162 + MIR SINE MIR 80 154 -108 2364 63 0 3 chrX 9908978 9909277 -167064863 + AluY SINE Alu 1 298 -13 267 286 17 76 chrX 9909277 9909313 -167064827 + MIR SINE MIR 154 191 -71 249 33 0 0 chrX 9910009 9910039 -167064101 + (TC)n Simple_repeat Simple_repeat 1 30 0 270 0 0 0 chrX 9910039 9910069 -167064071 + (CA)n Simple_repeat Simple_repeat 1 30 0 214 301 0 55 chrX 9911082 9911155 -167062985 + L3 LINE CR1 888 956 -621 1802 181 13 19 chrX 9911320 9911634 -167062506 - AluJb SINE Alu 0 312 1 229 299 65 19 chrX 9911647 9911754 -167062386 - MER117 DNA MER1_type -53 144 33 403 306 95 31 chrX 9911764 9911986 -167062154 + L3 LINE CR1 1112 1347 -230 1444 239 81 84 chrX 9912650 9913528 -167060612 + L1MC4 LINE L1 7048 7922 -120 761 191 8 0 chrX 9913602 9913868 -167060272 + (CAGA)n Simple_repeat Simple_repeat 1 268 0 863 160 6 0 chrX 9913885 9914060 -167060080 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 846 104 19 13 chrX 9914103 9914257 -167059883 + (TAGA)n Simple_repeat Simple_repeat 2 156 0 1933 107 44 4 chrX 9914264 9914534 -167059606 + AluSq SINE Alu 1 281 -32 216 0 0 0 chrX 9914536 9914560 -167059580 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 310 233 25 42 chrX 9914575 9914695 -167059445 + L1MC4 LINE L1 7925 8042 0 2252 107 0 7 chrX 9915595 9916019 -167058121 - AluY SINE Alu 0 422 1 1140 86 0 0 chrX 9918316 9918746 -167055394 + (TA)n Simple_repeat Simple_repeat 1 430 0 1916 132 10 24 chrX 9918766 9919062 -167055078 + AluJb SINE Alu 1 292 -20 1671 179 3 25 chrX 9919803 9920121 -167054019 + AluJo SINE Alu 1 311 -1 402 227 241 0 chrX 9921066 9921207 -167052933 + MER5A DNA MER1_type 9 183 -6 21 36 0 0 chrX 9923094 9923122 -167051018 + AT_rich Low_complexity Low_complexity 1 28 0 2255 57 0 30 chrX 9923489 9923787 -167050353 + AluY SINE Alu 1 289 -22 832 292 80 31 chrX 9924314 9924824 -167049316 + L1MEc LINE L1 1526 2060 -4336 2357 86 3 0 chrX 9924828 9925120 -167049020 - AluSp SINE Alu -20 293 1 552 100 0 0 chrX 9925272 9925352 -167048788 + MADE1 DNA Mariner 1 80 0 606 165 8 8 chrX 9925359 9925480 -167048660 + MLT2B2 LTR ERVL 1 121 -394 2066 92 82 0 chrX 9925873 9926154 -167047986 + AluSg SINE Alu 1 304 -6 1744 94 148 0 chrX 9926493 9926749 -167047391 - AluSx SINE Alu -18 294 1 223 333 62 31 chrX 9929165 9929294 -167044846 + MIR SINE MIR 130 262 0 288 0 0 0 chrX 9929512 9929544 -167044596 + (T)n Simple_repeat Simple_repeat 1 32 0 1945 158 21 21 chrX 9929986 9930367 -167043773 - L1PA16 LINE L1 -2 6164 5784 435 180 0 30 chrX 9930367 9930467 -167043673 - L1PA16 LINE L1 -337 5829 5733 343 136 0 0 chrX 9930777 9930843 -167043297 + L1P4 LINE L1 5594 5659 -507 391 154 49 0 chrX 9933219 9933612 -167040528 + (TA)n Simple_repeat Simple_repeat 1 412 0 296 237 33 3 chrX 9933625 9933954 -167040186 + (TA)n Simple_repeat Simple_repeat 1 339 0 22 0 0 0 chrX 9934000 9934022 -167040118 + AT_rich Low_complexity Low_complexity 1 22 0 220 208 19 0 chrX 9934239 9934345 -167039795 + (TA)n Simple_repeat Simple_repeat 2 109 0 288 215 0 25 chrX 9934923 9935044 -167039096 + CT-rich Low_complexity Low_complexity 1 118 0 418 172 6 32 chrX 9935591 9935748 -167038392 + CT-rich Low_complexity Low_complexity 1 153 0 22 35 0 0 chrX 9937670 9937699 -167036441 + AT_rich Low_complexity Low_complexity 1 29 0 284 167 11 89 chrX 9937704 9937794 -167036346 - MLT2C1 LTR ERVL -55 342 260 1803 177 20 41 chrX 9937794 9938347 -167035793 + L1MB1 LINE L1 5158 5689 -623 359 186 35 0 chrX 9939550 9939636 -167034504 - L1MB4 LINE L1 -1 6179 6091 * 4195 185 38 12 chrX 9939629 9940620 -167033520 - L1MA1 LINE L1 -235 6067 5001 2126 146 0 19 chrX 9940620 9940935 -167033205 - AluSx SINE Alu -3 309 1 4195 185 38 12 chrX 9940935 9941461 -167032679 - L1MA1 LINE L1 -1301 5001 4490 1501 157 18 28 chrX 9941553 9941839 -167032301 + Tigger1 DNA MER2_type 1 283 -2135 333 93 37 0 chrX 9941848 9941902 -167032238 + L1 LINE L1 4712 4767 -1379 647 191 7 40 chrX 9941920 9942072 -167032068 + L1M1 LINE L1 22 168 -7397 2693 73 8 6 chrX 9942076 9942430 -167031710 + THE1A LTR MaLR 1 355 0 11253 105 15 0 chrX 9942430 9943986 -167030154 + THE1A-int LTR MaLR 1 1580 0 2665 83 11 0 chrX 9943986 9944337 -167029803 + THE1A LTR MaLR 1 355 0 249 248 67 48 chrX 9944908 9945013 -167029127 - MER5B DNA MER1_type -7 171 65 233 326 152 0 chrX 9945020 9945112 -167029028 + MER5B DNA MER1_type 12 117 -61 334 293 45 30 chrX 9945125 9945327 -167028813 + L1MB1 LINE L1 5701 5905 -257 265 206 50 14 chrX 9945374 9945515 -167028625 + (TA)n Simple_repeat Simple_repeat 1 146 0 2270 98 0 0 chrX 9945616 9945911 -167028229 + AluSg SINE Alu 1 295 -15 205 338 78 35 chrX 9946817 9946959 -167027181 - MIR3 SINE MIR -59 149 2 232 297 127 17 chrX 9947200 9947318 -167026822 + MIR SINE MIR 54 184 -78 1820 241 4 12 chrX 9947548 9948045 -167026095 - L1MD3 LINE L1 -2 7993 7501 837 235 23 18 chrX 9948774 9948991 -167025149 + MER20 DNA MER1_type 1 218 -1 945 144 163 6 chrX 9949071 9949231 -167024909 - AluSx SINE Alu -22 290 106 3757 144 159 95 chrX 9949231 9950519 -167023621 + pTR5 LTR ERV1 744 2435 -3 759 155 0 0 chrX 9950519 9950635 -167023505 - AluSx SINE Alu -196 116 1 991 151 12 8 chrX 9951303 9951562 -167022578 + (TA)n Simple_repeat Simple_repeat 1 260 0 1231 234 82 62 chrX 9951373 9951850 -167022290 - L1MC3 LINE L1 -19 7766 7452 237 33 0 0 chrX 9951850 9951880 -167022260 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1231 234 82 62 chrX 9951880 9952133 -167022007 - L1MC3 LINE L1 -333 7452 7206 282 172 31 16 chrX 9952142 9952206 -167021934 - MLT1F LTR MaLR -436 131 67 944 124 0 43 chrX 9952261 9952447 -167021693 - L1MA7 LINE L1 -3 6288 6111 2463 76 0 0 chrX 9953232 9953533 -167020607 - AluSx SINE Alu -11 301 1 501 32 0 0 chrX 9955107 9955170 -167018970 + (TC)n Simple_repeat Simple_repeat 2 64 0 225 0 0 0 chrX 9955169 9955194 -167018946 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 904 89 37 0 chrX 9955529 9955664 -167018476 + L1PA10 LINE L1 6028 6167 -1 184 339 48 48 chrX 9958193 9958317 -167015823 + MIR SINE MIR 21 144 -64 202 298 197 10 chrX 9959189 9959387 -167014753 - L2 LINE L2 -589 2725 2491 205 208 28 0 chrX 9961041 9961113 -167013027 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 357 282 66 54 chrX 9961292 9961551 -167012589 + L1MA9 LINE L1 6013 6274 -38 225 134 0 90 chrX 9961602 9961632 -167012508 + (TAAAAA)n Simple_repeat Simple_repeat 4 26 -38 1220 60 0 0 chrX 9961632 9961783 -167012357 + L1PA3 LINE L1 6002 6152 -3 225 134 0 90 chrX 9961783 9961819 -167012321 + (TAAAAA)n Simple_repeat Simple_repeat 26 64 0 279 0 0 0 chrX 9962237 9962268 -167011872 + (A)n Simple_repeat Simple_repeat 1 31 0 763 229 39 0 chrX 9962273 9962426 -167011714 + FRAM SINE Alu 1 159 -7 2333 109 0 0 chrX 9963826 9964137 -167010003 - AluSx SINE Alu -1 311 1 1711 154 11 0 chrX 9964268 9964540 -167009600 - AluJo SINE Alu -3 309 35 26 0 0 0 chrX 9964599 9964625 -167009515 + AT_rich Low_complexity Low_complexity 1 26 0 286 256 13 0 chrX 9964823 9964901 -167009239 - MLT1F LTR MaLR -463 79 1 200 219 12 37 chrX 9965462 9965544 -167008596 + A-rich Low_complexity Low_complexity 5 84 0 581 259 151 22 chrX 9965998 9966230 -167007910 - MIR SINE MIR 0 262 1 5481 90 15 0 chrX 9966541 9967332 -167006808 - L1PA10 LINE L1 -4 6164 5362 754 132 0 0 chrX 9967328 9967457 -167006683 + L1PA10 LINE L1 5222 5350 -796 * 207 100 0 0 chrX 9967532 9967562 -167006578 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chrX 9968717 9968745 -167005395 + AT_rich Low_complexity Low_complexity 1 28 0 288 343 0 0 chrX 9969702 9969801 -167004339 - MIR SINE MIR -10 252 154 1391 192 14 52 chrX 9970001 9970288 -167003852 - AluJb SINE Alu -36 276 1 251 299 0 73 chrX 9970299 9970436 -167003704 - MIR SINE MIR -64 144 18 857 136 0 0 chrX 9970727 9970859 -167003281 - FLAM_C SINE Alu 0 133 2 680 219 11 48 chrX 9971248 9971435 -167002705 - MER20 DNA MER1_type 0 219 40 2177 136 72 13 chrX 9971443 9971834 -167002306 - MSTB LTR MaLR -12 414 1 244 211 19 0 chrX 9971834 9971880 -167002260 - MER20 DNA MER1_type -172 47 1 308 323 111 72 chrX 9971917 9972654 -167001486 + L2 LINE L2 2211 2976 -338 22 0 0 0 chrX 9972927 9972949 -167001191 + AT_rich Low_complexity Low_complexity 1 22 0 217 310 147 0 chrX 9973212 9973328 -167000812 - MIR SINE MIR -21 241 109 671 284 31 7 chrX 9973344 9973752 -167000388 - MLT1E3 LTR MaLR -147 477 30 247 221 116 0 chrX 9974529 9974615 -166999525 - MER20 DNA MER1_type -100 119 24 2136 87 13 52 chrX 9975547 9975857 -166998283 + AluSx SINE Alu 1 298 -14 343 289 114 30 chrX 9976712 9976913 -166997227 + L1MC4a LINE L1 5703 5920 -1888 2171 213 30 70 chrX 9977145 9977840 -166996300 + LTR8 LTR ERV1 25 691 0 398 250 25 0 chrX 9979481 9979561 -166994579 + MER5A DNA MER1_type 2 83 -106 371 351 0 7 chrX 9980004 9980152 -166993988 - MIR SINE MIR -48 214 68 2132 138 0 0 chrX 9980544 9980855 -166993285 - AluSx SINE Alu -1 311 1 700 314 90 0 chrX 9981290 9981624 -166992516 + L2 LINE L2 2575 2938 -376 290 238 0 0 chrX 9981738 9981801 -166992339 + L2 LINE L2 3210 3272 0 216 413 0 0 chrX 9982479 9982571 -166991569 + MIR3 SINE MIR 69 160 -48 1478 159 4 4 chrX 9983146 9983403 -166990737 - Tigger3(Golem) DNA MER2_type -1 3028 2772 590 197 21 9 chrX 9983400 9983528 -166990612 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 779 193 40 0 chrX 9983618 9983768 -166990372 - FRAM SINE Alu -16 160 5 225 0 0 0 chrX 9983983 9984008 -166990132 + (CA)n Simple_repeat Simple_repeat 2 26 0 581 272 6 12 chrX 9984097 9984266 -166989874 + MER20 DNA MER1_type 50 217 -2 3122 167 19 15 chrX 9984407 9984999 -166989141 - LTR26 LTR ERV1 0 603 10 2160 135 0 0 chrX 9985574 9985878 -166988262 - AluSx SINE Alu -8 304 1 3727 94 10 52 chrX 9985967 9986585 -166987555 - LTR14B LTR ERVK 0 608 17 2449 106 30 8 chrX 9987341 9987708 -166986432 + THE1C LTR MaLR 1 375 0 822 195 41 59 chrX 9987832 9988053 -166986087 + MER58A DNA MER1_type 7 223 -1 507 60 0 0 chrX 9988724 9988791 -166985349 + (TG)n Simple_repeat Simple_repeat 1 67 0 673 211 34 11 chrX 9988940 9989115 -166985025 - MER3 DNA MER1_type -12 197 19 309 85 0 0 chrX 9990148 9990195 -166983945 + L1MA5A LINE L1 6241 6287 -10 31 0 0 0 chrX 9990604 9990635 -166983505 + AT_rich Low_complexity Low_complexity 1 31 0 1246 132 0 0 chrX 9990635 9990809 -166983331 - AluSq SINE Alu -24 289 116 198 281 24 12 chrX 9991021 9991103 -166983037 - MIR SINE MIR -70 192 110 373 186 0 20 chrX 9992260 9992362 -166981778 + (TG)n Simple_repeat Simple_repeat 1 100 0 22 0 0 0 chrX 9992609 9992631 -166981509 + AT_rich Low_complexity Low_complexity 1 22 0 1033 178 4 62 chrX 9992999 9993240 -166980900 + L1MD2 LINE L1 6111 6337 -22 2778 7 3 3 chrX 9993443 9993753 -166980387 - AluYa5 SINE Alu -1 310 1 316 256 12 69 chrX 9994252 9994412 -166979728 - L1ME2 LINE L1 -277 5887 5737 492 156 11 0 chrX 9994413 9994503 -166979637 + L1ME LINE L1 5628 5718 -444 192 191 0 0 chrX 9994509 9994545 -166979595 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 1842 156 54 15 chrX 9994545 9994879 -166979261 + MER7A DNA MER2_type 2 346 0 2097 123 7 0 chrX 9995883 9996184 -166977956 - AluSx SINE Alu -9 303 1 206 253 0 24 chrX 9996302 9996385 -166977755 + (TA)n Simple_repeat Simple_repeat 2 82 0 396 88 0 0 chrX 9996434 9996461 -166977679 + (TCCA)n Simple_repeat Simple_repeat 1 84 0 396 88 0 0 chrX 9996461 9996518 -166977622 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 2005 125 67 25 chrX 9996519 9996567 -166977573 - THE1C LTR MaLR 0 375 330 450 0 0 0 chrX 9996567 9996617 -166977523 + (TA)n Simple_repeat Simple_repeat 2 51 0 2005 125 67 25 chrX 9996617 9996928 -166977212 - THE1C LTR MaLR -45 330 1 570 175 17 34 chrX 9997010 9997367 -166976773 + (TCTA)n Simple_repeat Simple_repeat 1 350 0 234 0 0 0 chrX 9997397 9997423 -166976717 + (GA)n Simple_repeat Simple_repeat 1 26 0 441 280 78 71 chrX 9997441 9997723 -166976417 - MLT2C2 LTR ERVL -113 284 1 215 310 39 62 chrX 9998027 9998156 -166975984 - MER5A DNA MER1_type -56 133 8 2320 57 7 10 chrX 9998351 9998649 -166975491 + AluY SINE Alu 1 297 -14 1531 157 99 4 chrX 9998660 9998922 -166975218 + AluJb SINE Alu 2 288 -24 2154 109 0 13 chrX 9999758 10000060 -166974080 + AluSx SINE Alu 12 309 -3 198 118 0 0 chrX 10000132 10000166 -166973974 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 279 330 33 60 chrX 10001095 10001165 -166972975 + MIR3 SINE MIR 31 101 -107 511 42 111 0 chrX 10001165 10001237 -166972903 + MADE1 DNA Mariner 1 80 0 279 330 33 60 chrX 10001237 10001348 -166972792 + MIR3 SINE MIR 101 207 -1 243 295 13 0 chrX 10002146 10002224 -166971916 + L1ME LINE L1 5576 5654 -467 384 331 186 33 chrX 10003809 10004380 -166969760 - L1MC4a LINE L1 -1884 5924 5267 33 0 0 0 chrX 10004394 10004427 -166969713 + AT_rich Low_complexity Low_complexity 1 33 0 1850 143 159 24 chrX 10004824 10005201 -166968939 + MSTA LTR MaLR 1 428 0 4197 137 27 10 chrX 10006338 10007037 -166967103 + MER50 LTR ERV1 1 711 -23 1823 141 3 55 chrX 10007977 10008304 -166965836 - AluJb SINE Alu -2 310 1 227 211 79 13 chrX 10008616 10008692 -166965448 - L1M LINE L1 -2406 5402 5322 247 169 46 0 chrX 10010014 10010079 -166964061 + (CATA)n Simple_repeat Simple_repeat 3 70 0 2010 199 22 10 chrX 10010079 10010482 -166963658 + MER82 DNA MER2_type 1 408 -245 375 274 137 17 chrX 10010499 10010616 -166963524 + MER82 DNA MER2_type 523 653 0 183 42 0 0 chrX 10012486 10012510 -166961630 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 830 137 0 0 chrX 10012510 10012627 -166961513 - AluJb SINE Alu -195 117 1 346 363 61 9 chrX 10013372 10013584 -166960556 - L1ME LINE L1 -340 5781 5559 1767 167 36 6 chrX 10015211 10015547 -166958593 + L1MB7 LINE L1 5458 5803 -381 2234 52 38 3 chrX 10015667 10015954 -166958186 + AluY SINE Alu 2 298 -13 279 296 38 23 chrX 10016328 10016460 -166957680 - LTR41 LTR ERVL -613 160 27 1535 223 11 3 chrX 10016515 10016870 -166957270 + L1MB7 LINE L1 5814 6171 -13 4764 127 28 1 chrX 10016915 10017662 -166956478 - L1PB4 LINE L1 -2 6154 5388 243 103 0 0 chrX 10017875 10017914 -166956226 + (T)n Simple_repeat Simple_repeat 1 39 0 245 300 40 47 chrX 10021776 10021926 -166952214 + L2 LINE L2 2996 3144 -169 1609 205 7 7 chrX 10022252 10022545 -166951595 + AluJo SINE Alu 1 293 -19 1550 226 28 22 chrX 10022775 10023137 -166951003 + MLT1A1 LTR MaLR 1 427 -1 254 270 10 50 chrX 10023261 10023361 -166950779 - MIR3 SINE MIR -110 98 3 180 302 32 16 chrX 10023379 10023442 -166950698 + MIR SINE MIR 11 74 -188 496 162 60 43 chrX 10024424 10024541 -166949599 + MER66A LTR ERV1 360 478 0 1730 270 81 17 chrX 10024543 10025597 -166948543 - L1ME LINE L1 -611 5553 4437 252 313 0 38 chrX 10026389 10026469 -166947671 + L2 LINE L2 3227 3303 -10 1549 169 47 32 chrX 10028994 10029273 -166944867 + AluJo SINE Alu 4 286 -26 656 41 77 18 chrX 10029273 10029443 -166944697 + (TA)n Simple_repeat Simple_repeat 1 180 0 1167 128 0 0 chrX 10029571 10029750 -166944390 + L1PA16 LINE L1 5798 5976 -190 2124 221 56 4 chrX 10030655 10031120 -166943020 - MLT1D LTR MaLR -1 504 16 2298 126 36 14 chrX 10031159 10031515 -166942625 + THE1B LTR MaLR 1 364 0 1085 239 92 35 chrX 10031598 10031946 -166942194 - MLT1A2 LTR MaLR -6 368 1 1728 168 3 3 chrX 10032442 10032727 -166941413 + AluJo SINE Alu 1 285 -27 501 17 0 0 chrX 10033752 10033810 -166940330 + (TG)n Simple_repeat Simple_repeat 1 58 0 707 208 100 86 chrX 10034005 10034166 -166939974 + MER39 LTR ERV1 417 450 -115 5085 36 0 2 chrX 10034166 10034776 -166939364 + L1PA4 LINE L1 5544 6152 -3 707 208 100 86 chrX 10034776 10034893 -166939247 + MER39 LTR ERV1 450 564 -1 25 65 0 0 chrX 10034967 10035013 -166939127 + AT_rich Low_complexity Low_complexity 1 46 0 284 275 50 42 chrX 10035135 10035255 -166938885 - L1ME1 LINE L1 -81 6085 5965 2031 240 28 11 chrX 10035261 10035824 -166938316 + L1ME1 LINE L1 5391 5963 -201 955 210 36 0 chrX 10036139 10036334 -166937806 + MER58A DNA MER1_type 12 213 -11 600 137 58 17 chrX 10037826 10038058 -166936082 + (TCTA)n Simple_repeat Simple_repeat 1 291 -47 230 95 24 0 chrX 10038058 10038100 -166936040 + (TATG)n Simple_repeat Simple_repeat 2 44 0 600 137 58 17 chrX 10038100 10038116 -166936024 + (TCTA)n Simple_repeat Simple_repeat 291 338 0 195 114 0 0 chrX 10038116 10038151 -166935989 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 2779 124 7 29 chrX 10039795 10040239 -166933901 + Tigger2a DNA MER2_type 1 434 0 2049 117 45 3 chrX 10040356 10040647 -166933493 - AluSx SINE Alu -9 303 1 197 293 85 94 chrX 10041150 10041256 -166932884 - L2 LINE L2 0 3272 3168 489 82 88 0 chrX 10041450 10041711 -166932429 + (TA)n Simple_repeat Simple_repeat 1 284 0 204 164 60 15 chrX 10041722 10041789 -166932351 + (TA)n Simple_repeat Simple_repeat 2 71 0 605 14 14 0 chrX 10242167 10242241 -166731899 + (TC)n Simple_repeat Simple_repeat 1 75 0 2197 104 0 0 chrX 10242267 10242547 -166731593 + AluY SINE Alu 5 284 -27 474 33 0 0 chrX 10242547 10242607 -166731533 + (CATA)n Simple_repeat Simple_repeat 2 61 0 1977 157 3 3 chrX 10243745 10244044 -166730096 - AluJb SINE Alu -13 299 1 962 239 71 34 chrX 10244046 10244372 -166729768 - L1MC4 LINE L1 -139 7903 7566 925 100 0 0 chrX 10244386 10244516 -166729624 - L1MA2 LINE L1 -406 5898 5769 21 0 0 0 chrX 10244518 10244539 -166729601 + AT_rich Low_complexity Low_complexity 1 21 0 4200 94 13 8 chrX 10244539 10245147 -166728993 - L1MA2 LINE L1 0 6304 5694 1230 131 4 5 chrX 10245149 10245360 -166728780 + L1MA4A LINE L1 5931 6194 -109 1435 137 0 76 chrX 10245460 10245709 -166728431 - AluJb SINE Alu -82 230 1 325 156 56 33 chrX 10246289 10246379 -166727761 + L1P LINE L1 5302 5393 -761 5751 102 9 6 chrX 10246386 10247186 -166726954 - L1PA14 LINE L1 -37 6124 5323 2727 135 37 22 chrX 10247846 10247993 -166726147 + L1MB4 LINE L1 5678 5821 -359 1058 183 0 0 chrX 10247993 10248168 -166725972 + FAM SINE Alu 1 175 0 2727 135 37 22 chrX 10248168 10248510 -166725630 + L1MB4 LINE L1 5821 6174 -6 1384 198 57 43 chrX 10248523 10248732 -166725408 + L1MD3 LINE L1 7594 7812 -183 220 50 0 50 chrX 10248732 10248772 -166725368 + (TATAG)n Simple_repeat Simple_repeat 3 40 0 1384 198 57 43 chrX 10248772 10248930 -166725210 + L1MD3 LINE L1 7812 7966 -29 914 109 0 0 chrX 10249534 10249704 -166724436 + FLAM_C SINE Alu 1 170 0 210 238 16 48 chrX 10249774 10249837 -166724303 + MIR SINE MIR 111 171 -91 1417 112 5 0 chrX 10250946 10251134 -166723006 - AluSx SINE Alu -123 189 1 2146 209 60 102 chrX 10251134 10251935 -166722205 - L1MC4 LINE L1 -492 7550 6784 266 186 0 34 chrX 10251935 10251994 -166722146 + MER5B DNA MER1_type 115 171 -7 1362 103 0 6 chrX 10252755 10252929 -166721211 - AluSq SINE Alu -140 173 1 255 286 57 9 chrX 10253592 10253697 -166720443 + MIR SINE MIR 41 150 -58 246 108 0 0 chrX 10253887 10253924 -166720216 + MIR SINE MIR 219 255 -7 1367 71 0 12 chrX 10254407 10254577 -166719563 + AluSg1 SINE Alu 1 168 -141 494 16 0 16 chrX 10254681 10254745 -166719395 + (TG)n Simple_repeat Simple_repeat 2 64 0 295 351 27 9 chrX 10255603 10255714 -166718426 - L2 LINE L2 0 3313 3201 318 337 37 18 chrX 10255841 10256004 -166718136 - L1ME LINE L1 -386 5735 5570 239 222 0 0 chrX 10256095 10256149 -166717991 - L1ME LINE L1 -683 5438 5385 244 261 15 15 chrX 10256551 10256616 -166717524 + LTR37B LTR ERV1 12 76 -392 297 200 27 81 chrX 10256662 10256836 -166717304 + LTR37B LTR ERV1 76 242 -226 392 160 27 0 chrX 10256941 10257016 -166717124 + MIR SINE MIR 176 252 -10 441 156 0 39 chrX 10257088 10257165 -166716975 + Tigger7 DNA MER2_type 246 319 -414 4190 161 4 24 chrX 10257165 10257884 -166716256 - MER44D DNA MER2_type 0 705 1 264 224 149 0 chrX 10258435 10258502 -166715638 + MIR SINE MIR 68 144 -64 2609 165 136 4 chrX 10259652 10260174 -166713966 - L1MB7 LINE L1 -67 6117 5527 2333 223 7 62 chrX 10260172 10260818 -166713322 - L1M4 LINE L1 -2784 3362 2757 * 2227 89 0 3 chrX 10260818 10261100 -166713040 - AluY SINE Alu -30 281 1 2333 223 7 62 chrX 10261100 10261163 -166712977 - L1M4 LINE L1 -3389 2757 2692 238 321 9 36 chrX 10261340 10261452 -166712688 - MIR SINE MIR -66 196 88 656 100 0 0 chrX 10261983 10262073 -166712067 - AluSg/x SINE Alu -12 298 209 807 217 85 19 chrX 10262180 10262392 -166711748 - L1MB8 LINE L1 -9 6169 5944 348 319 12 60 chrX 10262582 10262748 -166711392 + MIR3 SINE MIR 30 187 -21 1236 186 84 7 chrX 10263883 10264192 -166709948 - MER33 DNA MER1_type -5 319 1 181 212 0 0 chrX 10264529 10264562 -166709578 - L2 LINE L2 -14 3299 3267 1587 144 4 32 chrX 10264763 10265013 -166709127 - AluJo SINE Alu -67 245 3 2117 134 0 0 chrX 10265134 10265457 -166708683 - AluSx SINE Alu 0 323 1 2130 135 10 0 chrX 10265609 10265913 -166708227 - AluSx SINE Alu -5 307 1 455 262 8 91 chrX 10266254 10266517 -166707623 + HAL1 LINE L1 1912 2152 -355 830 188 0 0 chrX 10266517 10266661 -166707479 - MLT1C LTR MaLR 0 467 324 239 186 128 47 chrX 10266676 10266762 -166707378 + HAL1 LINE L1 2381 2473 -34 868 209 57 29 chrX 10267860 10268070 -166706070 + MER58A DNA MER1_type 1 216 -8 2278 97 0 26 chrX 10268070 10268379 -166705761 + AluSx SINE Alu 1 301 -11 2168 76 47 0 chrX 10268635 10268911 -166705229 - AluY SINE Alu -22 289 1 258 194 0 0 chrX 10268912 10268984 -166705156 - L1M4 LINE L1 -959 5187 5116 557 120 136 24 chrX 10268989 10269124 -166705016 - MLT1D LTR MaLR -314 191 1 354 248 57 0 chrX 10269125 10269230 -166704910 + MIR SINE MIR 126 236 -26 192 77 0 0 chrX 10271355 10271381 -166702759 + (TATG)n Simple_repeat Simple_repeat 4 29 0 360 0 0 0 chrX 10272219 10272259 -166701881 + (TG)n Simple_repeat Simple_repeat 2 41 0 241 250 0 0 chrX 10272437 10272493 -166701647 - L1ME LINE L1 -395 5726 5671 1275 161 0 0 chrX 10272821 10273013 -166701127 - AluJo SINE Alu -20 292 101 215 245 164 69 chrX 10273573 10273732 -166700408 + MIR SINE MIR 72 245 -17 1489 137 0 0 chrX 10274443 10274655 -166699485 + AluJb SINE Alu 86 297 -15 662 292 147 59 chrX 10274730 10275080 -166699060 - Charlie7 DNA MER1_type -1752 860 459 2352 97 10 0 chrX 10275080 10275388 -166698752 - AluSq SINE Alu -2 311 1 662 292 147 59 chrX 10275388 10275493 -166698647 - Charlie7 DNA MER1_type -2153 459 365 360 314 38 22 chrX 10275676 10275861 -166698279 - Charlie7 DNA MER1_type -2375 237 50 369 0 0 0 chrX 10275894 10275935 -166698205 + (TTG)n Simple_repeat Simple_repeat 2 42 0 774 160 0 7 chrX 10275943 10276087 -166698053 - L1M4 LINE L1 -1031 5115 4973 200 0 0 91 chrX 10276192 10276225 -166697915 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 2069 90 101 0 chrX 10276254 10276532 -166697608 + AluSx SINE Alu 1 306 -6 2913 83 5 5 chrX 10276889 10277264 -166696876 - THE1C LTR MaLR 0 375 1 2272 96 7 20 chrX 10278110 10278412 -166695728 + AluSx SINE Alu 1 298 -14 374 253 0 0 chrX 10278543 10278618 -166695522 + AluSp SINE Alu 123 197 -106 1890 121 43 63 chrX 10279964 10280312 -166693828 + MLT1B LTR MaLR 46 386 -4 2237 118 0 16 chrX 10280537 10280852 -166693288 - AluSg SINE Alu 0 310 1 23 0 0 0 chrX 10280854 10280877 -166693263 + AT_rich Low_complexity Low_complexity 1 23 0 2340 116 67 84 chrX 10281109 10281407 -166692733 - MLT1C LTR MaLR 0 467 178 960 184 0 0 chrX 10281407 10281570 -166692570 - FRAM SINE Alu 0 166 4 2340 116 67 84 chrX 10281570 10281746 -166692394 - MLT1C LTR MaLR -289 178 1 228 218 18 0 chrX 10281846 10281901 -166692239 + L2 LINE L2 3006 3061 -252 730 216 77 26 chrX 10282732 10282926 -166691214 + L1MC4a LINE L1 5711 5914 -1894 318 206 20 103 chrX 10283293 10283439 -166690701 - L1MC5 LINE L1 -69 7892 7759 2651 157 7 2 chrX 10283599 10284038 -166690102 - L1MB2 LINE L1 -7 6164 5724 1665 140 0 38 chrX 10284163 10284428 -166689712 - AluJb SINE Alu -25 287 33 268 303 0 0 chrX 10284695 10284771 -166689369 + MIR3 SINE MIR 132 207 -1 2146 93 18 14 chrX 10284787 10285067 -166689073 + AluSx SINE Alu 1 281 -31 195 42 0 0 chrX 10285070 10285094 -166689046 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2215 94 0 7 chrX 10285424 10285712 -166688428 - AluSx SINE Alu -26 286 1 690 150 225 67 chrX 10285946 10286213 -166687927 - MER4C LTR ERV1 0 465 157 1793 144 37 43 chrX 10286233 10286581 -166687559 - MER4A LTR ERV1 -318 346 1 180 0 0 0 chrX 10286590 10286610 -166687530 + (A)n Simple_repeat Simple_repeat 1 20 0 1096 281 82 27 chrX 10286840 10287317 -166686823 - L1MC4a LINE L1 -1883 5925 5423 228 156 22 0 chrX 10287491 10287536 -166686604 + (TATAG)n Simple_repeat Simple_repeat 3 48 0 237 236 106 24 chrX 10287636 10287655 -166686485 - L1MC4a LINE L1 -2383 5425 5409 2711 138 54 33 chrX 10287655 10288135 -166686005 - LTR2B LTR ERV1 0 490 1 237 236 106 24 chrX 10288135 10288238 -166685902 - L1MC4a LINE L1 -2399 5409 5293 2237 102 3 3 chrX 10288361 10288664 -166685476 - AluSg SINE Alu -4 306 4 1207 116 0 6 chrX 10289045 10289209 -166684931 + AluSq SINE Alu 59 221 -92 1197 244 82 0 chrX 10291029 10291351 -166682789 - L1ME3 LINE L1 -1 6161 5798 264 275 38 24 chrX 10291399 10291562 -166682578 - MIR SINE MIR -62 146 33 211 258 6 101 chrX 10292769 10292979 -166681161 + MIR SINE MIR 22 212 -50 353 74 37 0 chrX 10293427 10293481 -166680659 - Alu SINE Alu -2 299 244 2282 85 7 36 chrX 10293429 10293736 -166680404 - AluSx SINE Alu -14 298 1 237 267 9 97 chrX 10294799 10295034 -166679106 + GA-rich Low_complexity Low_complexity 1 214 0 346 264 5 91 chrX 10295142 10295380 -166678760 + GA-rich Low_complexity Low_complexity 1 217 0 286 250 76 21 chrX 10295687 10295831 -166678309 + LTR33 LTR ERVL 38 189 -332 336 232 171 18 chrX 10295941 10296105 -166678035 + LTR33 LTR ERVL 327 515 -6 203 306 20 10 chrX 10296105 10296203 -166677937 + MIR SINE MIR 161 259 -3 2356 94 3 0 chrX 10296676 10296975 -166677165 - AluSp SINE Alu -13 300 1 2030 148 13 0 chrX 10297045 10297350 -166676790 - AluJb SINE Alu -3 309 1 1847 150 24 41 chrX 10297716 10298010 -166676130 - AluJo SINE Alu -23 289 1 471 220 47 93 chrX 10298072 10298222 -166675918 - L1ME3 LINE L1 -8 6154 6012 3613 78 74 34 chrX 10298242 10298735 -166675405 + MER41B LTR ERV1 1 518 -117 2069 92 88 0 chrX 10298735 10299018 -166675122 - AluSc SINE Alu -1 308 1 3613 78 74 34 chrX 10299018 10299049 -166675091 + MER41B LTR ERV1 518 546 -89 1155 219 144 14 chrX 10299069 10299429 -166674711 - L1ME2 LINE L1 -134 6030 5624 2015 131 7 13 chrX 10299677 10299983 -166674157 - AluJo SINE Alu -6 306 3 706 148 9 0 chrX 10299985 10300093 -166674047 - AluJo/FLAM SINE Alu -202 110 2 351 242 10 10 chrX 10300105 10300204 -166673936 - LTR37B LTR ERV1 -42 426 328 594 0 0 0 chrX 10300751 10300817 -166673323 + (TTATG)n Simple_repeat Simple_repeat 2 67 0 1441 189 14 21 chrX 10300820 10301100 -166673040 - AluJb SINE Alu -30 282 5 205 238 0 0 chrX 10301540 10301582 -166672558 - MIR SINE MIR -1 261 220 2046 158 0 0 chrX 10301607 10301911 -166672229 - AluSx SINE Alu -8 304 1 229 367 0 9 chrX 10301959 10302068 -166672072 - MIR SINE MIR -133 129 22 2121 113 14 0 chrX 10303383 10303676 -166670464 + AluSx SINE Alu 1 297 -15 1704 191 121 14 chrX 10303819 10304277 -166669863 + MLT1E2 LTR MaLR 100 575 -51 305 221 80 71 chrX 10304316 10304429 -166669711 + L1MD2 LINE L1 585 698 -5842 3887 189 63 10 chrX 10304611 10305674 -166668466 + L1MD2 LINE L1 906 2011 -4529 814 85 9 0 chrX 10305674 10305780 -166668360 + AluY SINE Alu 1 107 -204 532 227 204 22 chrX 10305899 10306124 -166668016 + HAL1 LINE L1 1651 1916 -591 237 202 12 24 chrX 10306128 10306212 -166667928 + GA-rich Low_complexity Low_complexity 3 85 0 586 192 23 6 chrX 10306226 10306398 -166667742 + GA-rich Low_complexity Low_complexity 1 175 0 438 301 67 25 chrX 10306538 10306777 -166667363 + HAL1 LINE L1 2239 2487 -20 361 254 87 14 chrX 10306839 10306977 -166667163 - L1MC4a LINE L1 -1884 5924 5777 3118 150 58 81 chrX 10307031 10307723 -166666417 + LTR8 LTR ERV1 1 676 -15 867 302 89 27 chrX 10308067 10308518 -166665622 - L1MC4a LINE L1 -2070 5738 5260 1992 142 24 0 chrX 10308722 10309018 -166665122 + AluJb SINE Alu 1 303 -9 2038 87 6 87 chrX 10309797 10310118 -166664022 - AluSx SINE Alu -17 295 1 1345 198 62 56 chrX 10310198 10310521 -166663619 - MLT1D LTR MaLR -1 504 180 4425 162 63 22 chrX 10310533 10311475 -166662665 - L1MB4 LINE L1 0 6180 5185 1811 158 44 0 chrX 10311475 10311773 -166662367 - AluY SINE Alu 0 311 1 4425 162 63 22 chrX 10311773 10311842 -166662298 - L1MB4 LINE L1 -995 5185 5120 481 164 418 0 chrX 10311852 10311986 -166662154 - MLT1D LTR MaLR -315 190 1 1728 62 0 5 chrX 10312141 10312349 -166661791 + AluY SINE Alu 87 293 -18 12057 209 50 31 chrX 10312349 10312472 -166661668 + L1MD2 LINE L1 2004 2123 -4630 2184 132 0 0 chrX 10312472 10312775 -166661365 - AluSx SINE Alu -9 303 1 12057 209 50 31 chrX 10312775 10314234 -166659906 + L1MD2 LINE L1 2123 3553 -3200 1711 174 0 51 chrX 10314234 10314550 -166659590 + AluJb SINE Alu 1 300 -12 12057 209 50 31 chrX 10314550 10315710 -166658430 + L1MD2 LINE L1 3553 4689 -2064 1737 158 36 75 chrX 10315710 10315949 -166658191 - MER7A DNA MER2_type -2692 346 126 2217 111 7 0 chrX 10315949 10316247 -166657893 + AluSx SINE Alu 1 300 -12 1737 158 36 75 chrX 10316247 10316368 -166657772 - MER7A DNA MER2_type -2912 126 2 12057 209 50 31 chrX 10316368 10317085 -166657055 + L1MD2 LINE L1 4689 5391 -1362 1884 143 4 4 chrX 10317085 10317358 -166656782 - AluJb SINE Alu -39 273 1 12057 209 50 31 chrX 10317358 10318578 -166655562 + L1MD2 LINE L1 5391 6753 0 494 226 57 0 chrX 10318583 10318707 -166655433 + MER5B DNA MER1_type 1 131 -47 21 0 0 0 chrX 10318738 10318759 -166655381 + AT_rich Low_complexity Low_complexity 1 21 0 1502 190 105 38 chrX 10319134 10319784 -166654356 - L2 LINE L2 -188 3125 2422 588 215 82 0 chrX 10320248 10320383 -166653757 + L1MA9 LINE L1 5994 6139 -173 261 139 0 0 chrX 10320889 10320932 -166653208 + (CA)n Simple_repeat Simple_repeat 2 44 0 189 0 0 0 chrX 10321403 10321424 -166652716 + (T)n Simple_repeat Simple_repeat 1 21 0 1333 223 207 29 chrX 10321613 10322149 -166651991 - MLT1G LTR MaLR 0 590 1 1855 140 3 3 chrX 10322225 10322510 -166651630 + AluJb SINE Alu 2 286 -26 408 306 65 0 chrX 10322519 10322643 -166651497 - L2 LINE L2 -5 3267 3136 2076 100 4 0 chrX 10323604 10323873 -166650267 + AluSx SINE Alu 28 297 -15 1314 201 70 72 chrX 10324138 10324358 -166649782 - L1MC5 LINE L1 -225 7736 7517 1965 118 44 30 chrX 10324358 10324654 -166649486 - AluSx SINE Alu -12 300 1 1314 201 70 72 chrX 10324654 10324950 -166649190 - L1MC5 LINE L1 -444 7517 7221 880 183 1 10 chrX 10324951 10325267 -166648873 + AluJo SINE Alu 1 280 -32 225 0 0 0 chrX 10325267 10325292 -166648848 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1221 176 51 16 chrX 10325297 10325552 -166648588 - L1MC5 LINE L1 -737 7224 6961 879 188 27 104 chrX 10325677 10325975 -166648165 - L1MC5 LINE L1 -1044 6917 6643 1868 137 46 3 chrX 10327711 10327996 -166646144 + AluSx SINE Alu 1 297 -15 2185 126 3 0 chrX 10328151 10328445 -166645695 + AluSx SINE Alu 1 295 -17 1122 127 0 0 chrX 10328551 10328709 -166645431 + AluSg/x SINE Alu 143 300 -10 296 224 60 60 chrX 10329174 10329290 -166644850 - MER5B DNA MER1_type -59 119 4 221 204 56 0 chrX 10329325 10329379 -166644761 + MER5A DNA MER1_type 40 96 -93 24 0 0 0 chrX 10330038 10330062 -166644078 + AT_rich Low_complexity Low_complexity 1 24 0 327 293 17 26 chrX 10330205 10330321 -166643819 + MIR SINE MIR 1 115 -147 2336 89 3 0 chrX 10330752 10331043 -166643097 + AluSx SINE Alu 1 292 -20 436 272 43 19 chrX 10331456 10331618 -166642522 + MIR SINE MIR 35 200 -62 1095 291 46 36 chrX 10332289 10332766 -166641374 - L1MCb LINE L1 -4992 1053 572 685 263 52 65 chrX 10333041 10333445 -166640695 - L1MCb LINE L1 -5669 376 93 2429 73 7 3 chrX 10333761 10334064 -166640076 + AluSc SINE Alu 1 304 -5 2161 111 3 43 chrX 10337065 10337210 -166636930 + AluJo SINE Alu 1 150 -162 2067 139 0 0 chrX 10337210 10337511 -166636629 + AluSx SINE Alu 1 301 -11 2161 111 3 43 chrX 10337511 10337689 -166636451 + AluJo SINE Alu 150 311 -1 2269 136 29 0 chrX 10338466 10338840 -166635300 + L1MA5 LINE L1 5909 6293 -7 1668 125 26 68 chrX 10338972 10339283 -166634857 - AluJb SINE Alu -14 298 1 1221 206 117 57 chrX 10339675 10340112 -166634028 - MLT1C LTR MaLR -4 463 1 791 223 56 44 chrX 10340224 10340475 -166633665 - L1MB8 LINE L1 -6 6172 5919 1827 176 3 3 chrX 10340477 10340772 -166633368 - AluJb SINE Alu -17 295 1 198 91 30 0 chrX 10340834 10340867 -166633273 + MER5A DNA MER1_type 42 75 -114 420 244 130 37 chrX 10340944 10341183 -166632957 - L1ME4a LINE L1 -236 5885 5628 7886 16 0 15 chrX 10341275 10342677 -166631463 + L1PA2 LINE L1 4766 6152 -3 1911 166 0 10 chrX 10342792 10343093 -166631047 - AluJb SINE Alu -14 298 1 200 111 28 0 chrX 10343132 10343168 -166630972 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 2495 87 0 0 chrX 10343646 10343956 -166630184 - AluSg SINE Alu 0 310 1 833 202 51 0 chrX 10344175 10344353 -166629787 - MER5A DNA MER1_type -2 187 1 1988 153 0 34 chrX 10345253 10345574 -166628566 + AluJo SINE Alu 1 310 -2 26 50 0 0 chrX 10345591 10345631 -166628509 + AT_rich Low_complexity Low_complexity 1 40 0 537 16 0 0 chrX 10347394 10347456 -166626684 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 2169 47 8 0 chrX 10347462 10347716 -166626424 - AluY SINE Alu -54 257 2 2535 77 0 0 chrX 10348221 10348532 -166625608 - AluY SINE Alu 0 311 1 432 104 0 0 chrX 10348556 10348623 -166625517 + (TG)n Simple_repeat Simple_repeat 1 67 0 247 108 31 46 chrX 10350180 10350224 -166623916 - L1MB2 LINE L1 0 6171 6127 2249 120 0 0 chrX 10350224 10350525 -166623615 - AluSq SINE Alu -12 301 1 247 108 31 46 chrX 10350525 10350545 -166623595 - L1MB2 LINE L1 -44 6127 6108 492 283 114 42 chrX 10350978 10351339 -166622801 + L1ME4a LINE L1 5653 6039 -82 1121 152 13 65 chrX 10351628 10351723 -166622417 + MER20 DNA MER1_type 1 99 -120 188 65 0 32 chrX 10351723 10351754 -166622386 + (CGGGGG)n Simple_repeat Simple_repeat 5 34 0 1121 152 13 65 chrX 10351754 10351889 -166622251 + MER20 DNA MER1_type 99 219 0 1851 167 0 20 chrX 10351962 10352262 -166621878 + AluJb SINE Alu 1 294 -18 216 0 0 0 chrX 10352262 10352286 -166621854 + (TA)n Simple_repeat Simple_repeat 2 25 0 279 246 35 53 chrX 10352331 10352445 -166621695 + MIR SINE MIR 36 147 -115 359 252 32 16 chrX 10352776 10352899 -166621241 + MIR SINE MIR 12 136 -126 398 248 25 16 chrX 10352928 10353049 -166621091 + MER94 DNA DNA 13 134 0 1897 126 10 34 chrX 10353063 10353357 -166620783 + AluJb SINE Alu 2 288 -24 2378 68 0 7 chrX 10353371 10353689 -166620451 + AluY SINE Alu 1 311 0 224 268 196 0 chrX 10353689 10353786 -166620354 + MIR SINE MIR 147 262 0 424 221 71 0 chrX 10354733 10354846 -166619294 + L1ME3A LINE L1 6042 6162 -8 461 287 134 15 chrX 10354931 10355133 -166619007 - MER112 DNA MER1_type -12 248 23 366 284 68 41 chrX 10355155 10355339 -166618801 + MIR SINE MIR 7 194 -65 641 308 80 49 chrX 10355944 10356431 -166617709 - L2 LINE L2 -4 3309 2808 306 0 0 0 chrX 10356841 10356875 -166617265 + (CA)n Simple_repeat Simple_repeat 2 35 0 2203 117 0 10 chrX 10357029 10357337 -166616803 - AluJb SINE Alu -7 305 1 208 283 80 59 chrX 10357813 10358000 -166616140 - MIR SINE MIR -55 207 17 285 301 61 39 chrX 10360173 10360402 -166613738 + MLT1K LTR MaLR 346 579 -9 920 180 68 10 chrX 10360529 10360735 -166613405 + L1MB7 LINE L1 5966 6183 -1 2050 134 0 7 chrX 10360744 10361028 -166613112 + AluSx SINE Alu 1 282 -30 1761 133 0 8 chrX 10361061 10361316 -166612824 + AluSx SINE Alu 1 253 -59 32 0 0 0 chrX 10361316 10361348 -166612792 + AT_rich Low_complexity Low_complexity 1 32 0 249 284 27 0 chrX 10361861 10361935 -166612205 + MLT2F LTR ERVL 333 408 -255 1228 190 136 8 chrX 10362203 10362461 -166611679 - AluJo SINE Alu -21 291 1 183 42 0 0 chrX 10362699 10362723 -166611417 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 1033 75 0 0 chrX 10362842 10362962 -166611178 + AluY SINE Alu 1 120 -191 218 109 65 0 chrX 10363063 10363109 -166611031 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 8674 106 27 12 chrX 10363144 10364424 -166609716 - HSMAR2 DNA Mariner -3 1299 2 1123 142 0 19 chrX 10364889 10365051 -166609089 - FRAM SINE Alu -20 156 1 1824 177 79 60 chrX 10365983 10366479 -166607661 + MLT1D LTR MaLR 1 505 0 1943 123 53 17 chrX 10368108 10368409 -166605731 + AluJo SINE Alu 1 312 0 204 244 58 23 chrX 10368748 10368834 -166605306 - L2 LINE L2 -1 3271 3183 452 202 0 39 chrX 10369616 10369720 -166604420 - MLT1A2 LTR MaLR -274 100 1 258 111 0 0 chrX 10370272 10370308 -166603832 + Tigger5 DNA MER2_type 2262 2297 -26 * 369 294 18 9 chrX 10370288 10370397 -166603743 - MER47A DNA MER2_type -256 110 1 1944 183 138 20 chrX 10370419 10370867 -166603273 + MLT1D LTR MaLR 4 504 -1 530 283 81 9 chrX 10370880 10371103 -166603037 + MLT1J LTR MaLR 68 306 -205 414 282 155 8 chrX 10371418 10371670 -166602470 + L1ME3 LINE L1 5542 5830 -332 1953 151 0 10 chrX 10371929 10372233 -166601907 - AluJb SINE Alu -11 301 1 325 230 262 21 chrX 10373054 10373241 -166600899 + MIR SINE MIR 31 262 0 4682 156 19 31 chrX 10373262 10374126 -166600014 - L1MB4 LINE L1 -2 6178 5326 854 213 107 0 chrX 10375930 10376099 -166598041 - MER58A DNA MER1_type 0 224 38 1728 147 6 69 chrX 10379645 10379978 -166594162 - AluJb SINE Alu 0 312 1 386 75 94 0 chrX 10380464 10380544 -166593596 + AluSp/q SINE Alu 229 313 0 2115 152 0 0 chrX 10380703 10381012 -166593128 + AluJo SINE Alu 1 309 -3 587 204 114 48 chrX 10383697 10383864 -166590276 - MER97c DNA MER1_type? -912 178 1 2358 106 0 0 chrX 10384064 10384375 -166589765 - AluSx SINE Alu -1 311 1 189 0 0 0 chrX 10384387 10384408 -166589732 + (T)n Simple_repeat Simple_repeat 1 21 0 399 190 13 0 chrX 10384887 10384966 -166589174 - MER103 DNA DNA -46 120 41 1271 168 0 24 chrX 10385892 10386100 -166588040 + AluJb SINE Alu 1 203 -109 653 247 49 22 chrX 10386415 10386638 -166587502 - L1ME LINE L1 -374 5747 5519 408 277 139 36 chrX 10386933 10387207 -166586933 - L1ME LINE L1 -1112 5034 4733 369 0 0 0 chrX 10387890 10387931 -166586209 + (TG)n Simple_repeat Simple_repeat 2 42 0 534 130 0 13 chrX 10387967 10388044 -166586096 - MER8 DNA MER2_type 0 239 164 378 0 0 0 chrX 10388633 10388675 -166585465 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 396 225 0 12 chrX 10390351 10390431 -166583709 - MER8 DNA MER2_type -159 80 2 1179 117 31 0 chrX 10390453 10390649 -166583491 + L1MA6 LINE L1 6099 6300 0 2401 77 3 0 chrX 10391514 10391837 -166582303 + AluSq SINE Alu 1 324 0 489 260 0 0 chrX 10392423 10392527 -166581613 - AluJo SINE Alu -176 136 33 240 214 0 0 chrX 10392951 10393007 -166581133 + CT-rich Low_complexity Low_complexity 4 59 0 258 333 60 0 chrX 10393761 10393845 -166580295 + MIR SINE MIR 60 148 -60 1410 138 35 13 chrX 10394399 10394630 -166579510 + MER46A DNA MER2_type 1 236 0 2011 107 36 4 chrX 10394769 10395049 -166579091 - AluSc SINE Alu -20 289 1 3190 107 57 2 chrX 10395124 10395612 -166578528 + L1MB3 LINE L1 5667 6181 -2 228 130 0 43 chrX 10396109 10396155 -166577985 - MLT1E3 LTR MaLR -13 611 568 581 67 45 11 chrX 10396185 10396274 -166577866 + L1PA13 LINE L1 6072 6163 0 433 294 17 24 chrX 10396344 10396513 -166577627 - MIR SINE MIR -62 146 17 1961 135 0 55 chrX 10397256 10397582 -166576558 - AluJo SINE Alu -4 308 1 184 309 43 21 chrX 10397582 10397676 -166576464 + L2 LINE L2 2394 2489 -825 213 206 0 59 chrX 10397899 10397967 -166576173 - L2 LINE L2 -194 3078 3015 1319 179 9 5 chrX 10398059 10398282 -166575858 + MER58A DNA MER1_type 1 224 0 605 276 84 21 chrX 10399275 10399561 -166574579 - L1MC4a LINE L1 -1884 5924 5621 1872 153 52 0 chrX 10399588 10399755 -166574385 - AluJb SINE Alu -8 304 114 216 0 0 0 chrX 10399755 10399779 -166574361 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1872 153 52 0 chrX 10399779 10399898 -166574242 - AluJb SINE Alu -198 114 3 564 95 0 0 chrX 10400137 10400221 -166573919 + (CA)n Simple_repeat Simple_repeat 2 85 0 1641 181 14 24 chrX 10400743 10401036 -166573104 - AluJo SINE Alu -22 290 1 1329 205 106 27 chrX 10401091 10401495 -166572645 - Charlie4a DNA MER1_type -24 484 49 305 132 57 0 chrX 10453095 10453148 -166520992 - MLT1G LTR MaLR -32 558 503 2538 93 30 8 chrX 10454268 10454633 -166519507 + THE1C LTR MaLR 1 373 -2 287 311 29 0 chrX 10456109 10456224 -166517916 + MER20 DNA MER1_type 76 197 -22 884 134 17 17 chrX 10456383 10456621 -166517519 + CT-rich Low_complexity Low_complexity 1 238 0 199 235 7 7 chrX 10457027 10457163 -166516977 + (TA)n Simple_repeat Simple_repeat 2 137 0 32 43 0 0 chrX 10457176 10457222 -166516918 + AT_rich Low_complexity Low_complexity 1 46 0 2335 83 0 3 chrX 10457499 10457828 -166516312 + AluSq SINE Alu 1 328 0 180 0 0 0 chrX 10459080 10459100 -166515040 + (T)n Simple_repeat Simple_repeat 1 20 0 1574 189 30 20 chrX 10459711 10460013 -166514127 + AluJo SINE Alu 1 305 -7 723 162 133 40 chrX 10460239 10460382 -166513758 - MER5A DNA MER1_type 0 189 26 186 43 0 0 chrX 10460382 10460405 -166513735 + (CTG)n Simple_repeat Simple_repeat 1 23 0 723 162 133 40 chrX 10460405 10460434 -166513706 - MER5A DNA MER1_type -163 26 1 201 147 0 0 chrX 10460661 10460695 -166513445 + (TG)n Simple_repeat Simple_repeat 1 34 0 265 324 58 53 chrX 10460794 10461019 -166513121 + MIR SINE MIR 24 249 -13 310 284 17 35 chrX 10462370 10462486 -166511654 + MIR3 SINE MIR 55 168 -40 659 124 0 0 chrX 10462694 10462791 -166511349 + L1PB3 LINE L1 6054 6150 -4 205 132 0 53 chrX 10462964 10463002 -166511138 + (TTTCC)n Simple_repeat Simple_repeat 5 40 0 420 303 0 35 chrX 10463645 10463787 -166510353 + MIR SINE MIR 13 149 -113 874 271 102 11 chrX 10463790 10464118 -166510022 - LTR16A LTR ERVL 0 457 89 309 314 71 82 chrX 10464243 10464887 -166509253 + L1MEc LINE L1 211 847 -5549 1455 187 4 0 chrX 10465170 10465405 -166508735 + AluJb SINE Alu 1 236 -76 434 68 0 0 chrX 10465455 10465514 -166508626 + AluJb SINE Alu 240 298 -14 237 345 43 17 chrX 10466480 10466596 -166507544 - L2 LINE L2 0 3272 3154 524 238 159 0 chrX 10466613 10466764 -166507376 + MER5A DNA MER1_type 9 183 -6 584 190 56 67 chrX 10466779 10466958 -166507182 - MER5B DNA MER1_type 0 178 2 219 267 13 27 chrX 10467645 10467720 -166506420 + L3 LINE CR1 1403 1476 -101 253 146 0 21 chrX 10468144 10468192 -166505948 - MER94 DNA DNA -34 100 54 309 190 25 63 chrX 10468762 10468841 -166505299 - MER5B DNA MER1_type -101 77 2 2233 105 0 10 chrX 10468865 10469169 -166504971 + AluSx SINE Alu 1 301 -11 1435 192 28 9 chrX 10472288 10472606 -166501534 - MER33 DNA MER1_type 0 324 1 24 32 0 0 chrX 10472606 10472637 -166501503 + AT_rich Low_complexity Low_complexity 1 31 0 2418 68 28 0 chrX 10472642 10472964 -166501176 - L1MA1 LINE L1 -9 6293 5963 445 276 6 71 chrX 10473183 10473353 -166500787 + MIR3 SINE MIR 42 200 -8 703 172 25 37 chrX 10473604 10473836 -166500304 + AluJb SINE Alu 2 312 0 1934 134 0 11 chrX 10475007 10475291 -166498849 + AluJo SINE Alu 7 287 -25 200 31 62 0 chrX 10475805 10475837 -166498303 + A-rich Low_complexity Low_complexity 2 35 0 2757 86 44 3 chrX 10475985 10476526 -166497614 - MER51A LTR ERV1 0 634 1 * 2933 195 26 29 chrX 10476526 10477175 -166496965 - LTR65 LTR ERV1 -22 647 1 180 0 0 0 chrX 10477216 10477236 -166496904 + (A)n Simple_repeat Simple_repeat 1 20 0 909 168 10 64 chrX 10478012 10478215 -166495925 - MER20 DNA MER1_type 0 219 28 216 255 0 0 chrX 10478278 10478325 -166495815 + L2 LINE L2 3265 3311 -2 872 152 84 22 chrX 10478522 10478700 -166495440 + MER5A DNA MER1_type 1 189 0 2584 47 3 0 chrX 10478715 10479015 -166495125 - AluY SINE Alu -10 301 1 2200 107 0 0 chrX 10479120 10479451 -166494689 - AluSg SINE Alu 0 331 1 1109 182 108 8 chrX 10479905 10480163 -166493977 + MER46C DNA MER2_type 2 285 -53 2973 46 11 19 chrX 10481686 10482058 -166492082 - L1PA8A LINE L1 0 6131 5763 204 241 35 92 chrX 10482465 10482606 -166491534 - MIR3 SINE MIR -61 147 15 409 187 13 0 chrX 10482833 10482908 -166491232 + L1ME1 LINE L1 6042 6117 -49 399 180 0 0 chrX 10483038 10483149 -166490991 + CT-rich Low_complexity Low_complexity 2 112 0 585 0 0 0 chrX 10483151 10483216 -166490924 + (CA)n Simple_repeat Simple_repeat 1 65 0 747 264 87 20 chrX 10483234 10483488 -166490652 - MLT1L LTR MaLR -344 271 1 201 339 0 0 chrX 10484034 10484090 -166490050 + C-rich Low_complexity Low_complexity 5 60 0 1793 144 0 11 chrX 10490366 10490650 -166483490 - AluJb SINE Alu -2 310 30 225 0 0 0 chrX 10490659 10490684 -166483456 + (T)n Simple_repeat Simple_repeat 1 25 0 1761 50 59 0 chrX 10490693 10490913 -166483227 - AluY SINE Alu -77 234 2 4321 154 8 1 chrX 10491732 10492389 -166481751 + Tigger1 DNA MER2_type 1 661 -1757 896 121 0 0 chrX 10492389 10492505 -166481635 + FLAM_C SINE Alu 2 117 -26 405 0 0 0 chrX 10492505 10492550 -166481590 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3633 98 31 0 chrX 10492550 10493062 -166481078 + Tigger1 DNA MER2_type 650 1177 -1241 911 127 0 8 chrX 10493062 10493188 -166480952 + FLAM_C SINE Alu 2 126 -17 225 65 0 0 chrX 10493444 10493475 -166480665 + (T)n Simple_repeat Simple_repeat 1 31 0 2442 89 0 6 chrX 10493778 10494092 -166480048 + AluSx SINE Alu 1 312 0 1879 146 0 24 chrX 10494248 10494542 -166479598 + AluJb SINE Alu 3 289 -23 184 363 52 37 chrX 10494751 10494886 -166479254 + L2 LINE L2 3132 3268 -4 210 342 135 9 chrX 10495609 10495720 -166478420 - L2 LINE L2 -3 3269 3145 379 284 9 26 chrX 10496329 10496445 -166477695 + L2 LINE L2 3199 3312 -1 2404 93 3 3 chrX 10496823 10497133 -166477007 + AluSx SINE Alu 1 310 -2 185 313 71 9 chrX 10497663 10497775 -166476365 + MIR SINE MIR 130 248 -14 500 244 192 6 chrX 10498623 10498779 -166475361 + MER5A DNA MER1_type 4 188 -1 635 337 4 16 chrX 10499076 10499331 -166474809 + MIR SINE MIR 8 259 -3 186 281 0 0 chrX 10499639 10499696 -166474444 - L2 LINE L2 -1 3312 3256 643 145 76 0 chrX 10500033 10500164 -166473976 - L1MA8 LINE L1 -3 6288 6148 1927 149 3 0 chrX 10501443 10501725 -166472415 + AluJo SINE Alu 1 283 -29 8806 99 21 2 chrX 10501825 10503036 -166471104 + Tigger1 DNA MER2_type 1184 2418 0 219 146 0 0 chrX 10503621 10503662 -166470478 + (A)n Simple_repeat Simple_repeat 1 41 0 1453 233 192 13 chrX 10504642 10505115 -166469025 - MLT1G LTR MaLR -32 558 1 1822 135 10 61 chrX 10506717 10507029 -166467111 + AluJo SINE Alu 1 296 -16 2018 126 37 0 chrX 10507545 10507839 -166466301 - AluJo SINE Alu -7 305 1 182 302 9 43 chrX 10508632 10508748 -166465392 - L2 LINE L2 -242 3030 2919 255 254 62 54 chrX 10509975 10510105 -166464035 + MIR SINE MIR 34 164 -98 1984 125 9 41 chrX 10510222 10510492 -166463648 - L1MB2 LINE L1 -3 6168 5910 2428 67 7 0 chrX 10510492 10510791 -166463349 - AluSp SINE Alu -10 303 3 1984 125 9 41 chrX 10510791 10510864 -166463276 - L1MB2 LINE L1 -261 5910 5836 717 163 16 0 chrX 10511880 10512009 -166462131 - MER5A DNA MER1_type 0 189 59 279 0 0 0 chrX 10512011 10512042 -166462098 + (CTG)n Simple_repeat Simple_repeat 1 31 0 1722 189 0 11 chrX 10513099 10513384 -166460756 + AluJb SINE Alu 1 282 -30 304 287 28 0 chrX 10513398 10513506 -166460634 + L1MC4 LINE L1 6595 6705 -1337 361 125 23 0 chrX 10513506 10513594 -166460546 + (TA)n Simple_repeat Simple_repeat 2 91 0 235 238 49 0 chrX 10513627 10513749 -166460391 + (TA)n Simple_repeat Simple_repeat 1 128 0 2134 124 0 31 chrX 10514953 10515275 -166458865 - AluSx SINE Alu 0 312 1 211 246 49 16 chrX 10515418 10515479 -166458661 - L3 LINE CR1 -672 905 843 463 269 43 0 chrX 10515578 10515719 -166458421 + MIR SINE MIR 39 185 -77 1868 159 0 3 chrX 10517221 10517504 -166456636 + AluJb SINE Alu 1 282 -30 330 67 0 0 chrX 10517665 10517710 -166456430 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 184 261 22 0 chrX 10517726 10517772 -166456368 - L2 LINE L2 -38 3234 3188 306 233 39 35 chrX 10518061 10518227 -166455913 - MIR SINE MIR -69 139 23 822 138 0 24 chrX 10519960 10520083 -166454057 + FLAM_C SINE Alu 1 120 -23 2332 83 7 0 chrX 10520385 10520685 -166453455 - AluSx SINE Alu -9 303 2 304 307 113 33 chrX 10520714 10521022 -166453118 - L1ME4a LINE L1 -11 6110 5757 2280 108 0 0 chrX 10521022 10521329 -166452811 - AluSx SINE Alu -5 307 1 304 307 113 33 chrX 10521329 10521444 -166452696 - L1ME4a LINE L1 -364 5757 5653 690 204 44 17 chrX 10521444 10521625 -166452515 + MIR SINE MIR 77 262 0 306 270 45 36 chrX 10521690 10521801 -166452339 - L1ME4a LINE L1 -552 5569 5458 917 206 103 53 chrX 10522236 10522261 -166451879 + L1M4 LINE L1 4779 4801 -1345 1867 181 30 0 chrX 10522261 10522592 -166451548 - MER58B DNA MER1_type 0 341 1 917 206 103 53 chrX 10522592 10522701 -166451439 + L1M4 LINE L1 4801 4903 -1243 2486 65 0 46 chrX 10522701 10523025 -166451115 + AluY SINE Alu 1 309 -2 917 206 103 53 chrX 10523025 10523287 -166450853 + L1M4 LINE L1 4903 5196 -950 2099 136 13 7 chrX 10524278 10524586 -166449554 - AluSx SINE Alu -2 310 1 2181 96 0 14 chrX 10524776 10525096 -166449044 - AluSx SINE Alu 0 312 1 2015 141 34 3 chrX 10525098 10525396 -166448744 - AluJb SINE Alu -5 307 1 2414 94 0 7 chrX 10525679 10525986 -166448154 - AluSg SINE Alu -5 305 1 207 0 0 0 chrX 10526164 10526187 -166447953 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 278 234 47 37 chrX 10526942 10526987 -166447153 + MIR SINE MIR 152 195 -67 1585 173 0 11 chrX 10526987 10527247 -166446893 + AluJo SINE Alu 18 274 -38 186 43 0 0 chrX 10527251 10527274 -166446866 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 278 234 47 37 chrX 10527274 10527330 -166446810 + MIR SINE MIR 197 259 -3 655 139 10 0 chrX 10528677 10528778 -166445362 - MLT1B LTR MaLR -38 352 251 * 849 168 0 7 chrX 10528771 10528908 -166445232 - MLT1B LTR MaLR -254 136 1 1642 136 106 23 chrX 10528971 10529273 -166444867 + MLT1A1 LTR MaLR 3 329 -36 280 304 3 0 chrX 10529781 10529870 -166444270 - MIR SINE MIR -50 158 67 2234 124 0 0 chrX 10530127 10530426 -166443714 + AluSx SINE Alu 1 299 -13 436 191 21 11 chrX 10530435 10530529 -166443611 - L1ME4a LINE L1 -71 6050 5956 200 313 0 0 chrX 10530663 10530727 -166443413 - L2 LINE L2 -1 3271 3208 425 285 147 48 chrX 10530727 10531039 -166443101 - L1ME4a LINE L1 -83 6038 5696 669 139 46 0 chrX 10531041 10531149 -166442991 + AluSg/x SINE Alu 180 292 -17 445 116 43 49 chrX 10531215 10531537 -166442603 + (TA)n Simple_repeat Simple_repeat 1 320 0 2089 128 0 3 chrX 10532751 10533040 -166441100 - AluJb SINE Alu -24 288 1 25 31 0 0 chrX 10535239 10535271 -166438869 + AT_rich Low_complexity Low_complexity 1 32 0 2594 97 33 15 chrX 10535418 10535809 -166438331 - L1MA2 LINE L1 -107 6197 5800 1886 159 32 60 chrX 10535913 10536164 -166437976 - L1MD2 LINE L1 0 6359 6122 2177 141 0 3 chrX 10536164 10536477 -166437663 - AluJb SINE Alu 0 312 1 1886 159 32 60 chrX 10536477 10536627 -166437513 - L1MD2 LINE L1 -237 6122 5969 724 135 18 0 chrX 10537565 10537676 -166436464 - AluJo/FRAM SINE Alu -20 292 180 864 90 0 0 chrX 10537676 10537787 -166436353 + AluSp/q SINE Alu 188 298 -15 2585 68 3 0 chrX 10538352 10538661 -166435479 + AluSq SINE Alu 1 310 -3 1079 139 5 48 chrX 10538717 10538934 -166435206 + MER20 DNA MER1_type 1 217 -2 194 136 51 17 chrX 10539119 10539178 -166434962 + GA-rich Low_complexity Low_complexity 1 61 0 1895 151 17 0 chrX 10542618 10542916 -166431224 - AluJb SINE Alu -9 303 1 181 325 26 13 chrX 10543030 10543107 -166431033 + MIR3 SINE MIR 87 164 -44 718 129 40 16 chrX 10543130 10543254 -166430886 + AluJb SINE Alu 7 133 -179 779 159 15 8 chrX 10543575 10543707 -166430433 - FLAM_A SINE Alu 0 133 1 827 196 15 39 chrX 10543879 10544083 -166430057 + Charlie2 DNA MER1_type 1884 2082 -780 2306 81 3 44 chrX 10544084 10544405 -166429735 + AluSg SINE Alu 1 308 -2 2172 93 0 48 chrX 10544406 10544717 -166429423 + AluSc SINE Alu 1 296 -13 2110 139 3 7 chrX 10544855 10545164 -166428976 + AluSx SINE Alu 1 308 -4 2457 89 0 0 chrX 10545669 10545973 -166428167 + AluSx SINE Alu 1 304 -8 1535 144 7 48 chrX 10545978 10546270 -166427870 + AluJo SINE Alu 1 280 -32 392 176 162 14 chrX 10546475 10546617 -166427523 - L1ME4a LINE L1 -204 5917 5755 242 306 149 33 chrX 10546619 10546740 -166427400 - L2 LINE L2 -16 3256 3122 304 250 40 0 chrX 10546868 10546944 -166427196 - L1ME4a LINE L1 -390 5731 5653 1751 151 13 16 chrX 10546948 10547132 -166427008 - AluJb SINE Alu -2 310 126 207 0 0 0 chrX 10547132 10547155 -166426985 + (TG)n Simple_repeat Simple_repeat 2 24 0 1751 151 13 16 chrX 10547155 10547281 -166426859 - AluJb SINE Alu -186 126 1 571 255 133 53 chrX 10547478 10547780 -166426360 + L2 LINE L2 2988 3313 0 887 112 0 0 chrX 10548156 10548281 -166425859 + AluSq/x SINE Alu 11 135 -177 1634 134 19 86 chrX 10548281 10548595 -166425545 + AluSx SINE Alu 1 293 -19 985 206 5 16 chrX 10548739 10548928 -166425212 + MER5A DNA MER1_type 1 187 -2 547 273 137 66 chrX 10549110 10549255 -166424885 + L1MD1 LINE L1 407 540 -5882 1974 135 23 0 chrX 10549255 10549559 -166424581 + AluJb SINE Alu 1 311 -1 547 273 137 66 chrX 10549559 10549956 -166424184 + L1MD1 LINE L1 540 904 -5518 1209 224 98 85 chrX 10550071 10550544 -166423596 + L1MD1 LINE L1 811 1277 -5218 185 0 40 0 chrX 10550544 10550569 -166423571 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 1756 128 0 19 chrX 10550569 10550834 -166423306 - AluSx SINE Alu -32 280 21 1209 224 98 85 chrX 10550834 10550876 -166423264 + L1MD1 LINE L1 1277 1317 -5178 1730 128 13 26 chrX 10550876 10551181 -166422959 - AluJb SINE Alu -11 301 1 1209 224 98 85 chrX 10551181 10551342 -166422798 + L1MD1 LINE L1 1317 1623 -4872 4257 241 59 23 chrX 10551403 10552715 -166421425 + L1MB8 LINE L1 3328 4686 -1460 1130 235 16 29 chrX 10552696 10553007 -166421133 + L1MD1 LINE L1 4219 4525 -2416 * 2353 223 42 17 chrX 10552999 10553641 -166420499 + L1MD1 LINE L1 5461 6118 -823 1944 114 43 0 chrX 10553641 10553940 -166420200 + AluSx SINE Alu 1 312 0 2076 105 3 3 chrX 10553963 10554258 -166419882 + AluSx SINE Alu 13 307 -5 1553 113 17 0 chrX 10554261 10554500 -166419640 + L1MD1 LINE L1 6482 6724 -430 2211 102 0 0 chrX 10554500 10554795 -166419345 - AluSx SINE Alu -17 295 1 868 154 47 6 chrX 10554798 10554967 -166419173 + L1MD1 LINE L1 6862 7037 0 447 260 194 26 chrX 10554996 10555176 -166418964 + L3 LINE CR1 1113 1340 -237 1677 158 20 17 chrX 10555176 10555473 -166418667 + AluJo SINE Alu 1 298 -14 447 260 194 26 chrX 10555473 10555519 -166418621 + L3 LINE CR1 1340 1377 -200 809 157 8 0 chrX 10555519 10555653 -166418487 + FLAM_C SINE Alu 1 135 -8 867 107 0 0 chrX 10555656 10555777 -166418363 + AluJb SINE Alu 186 306 -6 1803 174 28 9 chrX 10556683 10557121 -166417019 + L1MB8 LINE L1 5167 5613 -571 708 143 107 0 chrX 10557121 10557233 -166416907 + FLAM_C SINE Alu 1 124 -19 263 219 78 0 chrX 10557236 10557300 -166416840 + L1MB8 LINE L1 5587 5655 -529 1385 132 27 81 chrX 10557308 10557603 -166416537 + L1MB8 LINE L1 5900 6178 0 2952 81 11 6 chrX 10557610 10558078 -166416062 - L1PA13 LINE L1 -507 5656 5187 3689 79 10 0 chrX 10558078 10558547 -166415593 + L1PA13 LINE L1 5665 6149 -14 283 75 57 0 chrX 10558547 10558600 -166415540 + L1MA7 LINE L1 6235 6290 -1 1378 132 6 105 chrX 10558691 10559016 -166415124 + AluSx SINE Alu 11 303 -9 194 79 0 26 chrX 10559460 10559498 -166414642 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 242 197 26 40 chrX 10559572 10559648 -166414492 + C-rich Low_complexity Low_complexity 3 77 0 292 234 9 19 chrX 10559950 10560057 -166414083 + (CGG)n Simple_repeat Simple_repeat 3 108 0 2297 83 0 22 chrX 10560459 10560773 -166413367 - AluSx SINE Alu -5 307 1 2095 180 146 25 chrX 10560773 10561450 -166412690 + Charlie2 DNA MER1_type 2076 2834 -28 365 257 47 17 chrX 10561464 10561606 -166412534 - L1MC/D LINE L1 -461 5660 5541 581 286 13 13 chrX 10561894 10562048 -166412092 + L2 LINE L2 3116 3269 -3 456 219 265 13 chrX 10562109 10562260 -166411880 - MER3 DNA MER1_type -20 189 1 223 263 0 18 chrX 10562291 10562348 -166411792 + L2 LINE L2 3215 3270 -2 390 271 72 42 chrX 10562590 10562756 -166411384 + MIR SINE MIR 63 233 -29 1510 143 50 60 chrX 10562792 10563093 -166411047 + AluJo SINE Alu 6 303 -9 225 338 158 58 chrX 10563687 10563965 -166410175 - L2 LINE L2 -1 3271 2966 2228 83 0 0 chrX 10565057 10565346 -166408794 + AluSx SINE Alu 1 289 -23 196 179 32 16 chrX 10565346 10565469 -166408671 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 426 183 11 11 chrX 10565483 10565658 -166408482 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 304 147 40 0 chrX 10565658 10565733 -166408407 + (TATAA)n Simple_repeat Simple_repeat 2 79 0 395 101 82 0 chrX 10565738 10565897 -166408243 + (TA)n Simple_repeat Simple_repeat 2 173 0 275 253 181 12 chrX 10566244 10566327 -166407813 - L2 LINE L2 -42 3230 3134 391 318 59 12 chrX 10566898 10567068 -166407072 + MER5B DNA MER1_type 1 178 0 515 246 37 37 chrX 10567646 10567833 -166406307 + L1ME4a LINE L1 5933 6119 -2 1040 144 128 0 chrX 10567996 10568184 -166405956 + AluJb SINE Alu 85 296 -16 807 292 114 51 chrX 10568781 10569209 -166404931 - MLT1L LTR MaLR 0 615 161 432 333 88 22 chrX 10570403 10570803 -166403337 - L1ME4a LINE L1 -82 6039 5614 189 0 0 0 chrX 10570888 10570909 -166403231 + (TC)n Simple_repeat Simple_repeat 2 22 0 431 256 17 34 chrX 10571585 10571702 -166402438 - L2 LINE L2 -1 3312 3198 1759 151 7 10 chrX 10572565 10572863 -166401277 - AluJb SINE Alu -15 297 1 239 301 106 41 chrX 10573265 10573388 -166400752 + L2 LINE L2 3127 3257 -15 297 199 26 41 chrX 10573470 10573558 -166400582 + MIR SINE MIR 40 122 -111 310 255 21 32 chrX 10575281 10575375 -166398765 + MIR SINE MIR 50 142 -120 216 310 28 0 chrX 10576557 10576628 -166397512 + L2 LINE L2 3202 3274 -39 2180 96 0 7 chrX 10578521 10578813 -166395327 + AluSx SINE Alu 5 294 -18 282 256 155 23 chrX 10579192 10579321 -166394819 + MER103 DNA DNA 20 165 -1 2212 87 0 0 chrX 10580847 10581135 -166393005 + AluSx SINE Alu 1 288 -24 207 0 0 0 chrX 10581147 10581170 -166392970 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1862 142 3 17 chrX 10581225 10581521 -166392619 + AluJb SINE Alu 1 292 -20 320 217 11 54 chrX 10581632 10581724 -166392416 + MIR3 SINE MIR 92 179 -29 1557 142 30 10 chrX 10582253 10582549 -166391591 - AluY SINE Alu -9 302 1 29 0 0 0 chrX 10584004 10584033 -166390107 + AT_rich Low_complexity Low_complexity 1 29 0 2269 96 0 0 chrX 10586059 10586361 -166387779 - AluSx SINE Alu -10 302 1 2309 85 0 0 chrX 10587096 10587390 -166386750 - AluSx SINE Alu -18 294 1 198 0 0 0 chrX 10587865 10587887 -166386253 + (A)n Simple_repeat Simple_repeat 1 22 0 1959 92 14 4 chrX 10587887 10588168 -166385972 + AluSq SINE Alu 1 284 -29 557 244 103 0 chrX 10588400 10588556 -166385584 + MER5B DNA MER1_type 3 174 -4 326 208 14 0 chrX 10589798 10589870 -166384270 + MER3 DNA MER1_type 32 104 -105 * 615 242 28 79 chrX 10589819 10589933 -166384207 - MER3 DNA MER1_type -5 204 105 1474 146 73 15 chrX 10589933 10590207 -166383933 + AluJb SINE Alu 1 290 -22 615 242 28 79 chrX 10590207 10590307 -166383833 - MER3 DNA MER1_type -104 105 1 7195 40 13 0 chrX 10590356 10591729 -166382411 - L1PA8 LINE L1 -10 6162 4780 12374 80 34 1 chrX 10591729 10593452 -166380688 - L1P LINE L1 -1734 4412 2630 34 0 0 0 chrX 10593749 10593783 -166380357 + AT_rich Low_complexity Low_complexity 1 34 0 1462 185 10 14 chrX 10593798 10594090 -166380050 - AluJb SINE Alu -21 291 1 563 164 25 16 chrX 10594097 10594219 -166379921 - L1MB3 LINE L1 -2 6181 6059 2010 129 0 3 chrX 10594219 10594514 -166379626 + AluSx SINE Alu 1 294 -18 2132 104 0 3 chrX 10594524 10594821 -166379319 + AluSq SINE Alu 1 296 -17 849 201 48 43 chrX 10594851 10595086 -166379054 - L1MC1 LINE L1 0 6333 6123 1237 102 11 11 chrX 10595086 10595273 -166378867 - AluJb SINE Alu 0 312 126 2244 104 0 10 chrX 10595868 10596175 -166377965 + AluSx SINE Alu 1 304 -8 2124 114 0 44 chrX 10596323 10596458 -166377682 + AluSx SINE Alu 2 141 -171 2332 103 0 10 chrX 10596458 10596769 -166377371 + AluSq SINE Alu 1 308 -5 2124 114 0 44 chrX 10596769 10596949 -166377191 + AluSx SINE Alu 141 303 -9 486 294 127 30 chrX 10596984 10597314 -166376826 + MLT1J2 LTR MaLR 65 426 -24 25 31 0 0 chrX 10597617 10597649 -166376491 + AT_rich Low_complexity Low_complexity 1 32 0 1992 140 27 0 chrX 10597718 10598010 -166376130 - AluJb SINE Alu -12 300 1 366 152 0 30 chrX 10598425 10598491 -166375649 + MLT1I LTR MaLR 344 407 -2 219 36 0 0 chrX 10598548 10598576 -166375564 + (TCCCC)n Simple_repeat Simple_repeat 2 29 0 1784 152 3 18 chrX 10598576 10598859 -166375281 - AluJb SINE Alu -33 279 1 2166 125 0 3 chrX 10598965 10599260 -166374880 + AluSx SINE Alu 1 294 -18 432 307 127 5 chrX 10599523 10599712 -166374428 + L2 LINE L2 2430 2641 -673 1793 132 68 60 chrX 10599787 10599856 -166374284 - THE1C LTR MaLR -2 373 306 1838 161 0 10 chrX 10599856 10600155 -166373985 - AluSx SINE Alu -16 296 1 1793 132 68 60 chrX 10600155 10600455 -166373685 - THE1C LTR MaLR -69 306 1 2158 109 14 0 chrX 10600625 10600908 -166373232 - AluSx SINE Alu -25 287 1 2299 115 0 0 chrX 10602415 10602727 -166371413 - AluSx SINE Alu 0 312 1 3303 236 33 27 chrX 10602735 10603909 -166370231 - L1ME2 LINE L1 -1 6163 4981 267 325 0 0 chrX 10604217 10604297 -166369843 + MIR SINE MIR 46 125 -137 2346 104 0 0 chrX 10605230 10605528 -166368612 + AluSx SINE Alu 1 298 -14 2402 100 0 0 chrX 10606324 10606624 -166367516 + AluSx SINE Alu 1 300 -12 930 141 0 0 chrX 10606721 10606849 -166367291 - FRAM SINE Alu -16 160 33 2348 94 3 0 chrX 10607379 10607677 -166366463 + AluSx SINE Alu 1 299 -13 718 191 0 0 chrX 10608394 10608509 -166365631 - FLAM_A SINE Alu -17 116 2 234 304 35 35 chrX 10608823 10608938 -166365202 + MIR SINE MIR 22 136 -72 180 0 0 0 chrX 10609323 10609343 -166364797 + (T)n Simple_repeat Simple_repeat 1 20 0 2198 94 3 3 chrX 10609718 10610005 -166364135 - AluSq SINE Alu -26 287 1 785 191 31 80 chrX 10610279 10610567 -166363573 + L1MC5 LINE L1 7658 7931 -30 872 125 0 22 chrX 10610567 10610703 -166363437 + AluJo/FLAM SINE Alu 1 133 -169 1864 145 54 7 chrX 10610705 10611002 -166363138 + AluSx SINE Alu 1 311 -1 195 321 62 0 chrX 10611425 10611506 -166362634 + L2 LINE L2 3168 3253 -19 2028 158 0 3 chrX 10611913 10612224 -166361916 - AluJb SINE Alu -2 310 1 307 232 118 15 chrX 10612305 10612486 -166361654 + L1ME3A LINE L1 5754 5963 -207 435 38 0 0 chrX 10612495 10612548 -166361592 + (TG)n Simple_repeat Simple_repeat 2 54 0 2046 175 16 22 chrX 10612575 10612637 -166361503 - MLT1A1 LTR MaLR 0 365 304 2284 111 0 0 chrX 10612637 10612935 -166361205 - AluSx SINE Alu -14 298 1 2046 175 16 22 chrX 10612935 10613238 -166360902 - MLT1A1 LTR MaLR -61 304 2 738 184 58 35 chrX 10614615 10614789 -166359351 + MER5B DNA MER1_type 1 178 0 2442 99 0 0 chrX 10617345 10617657 -166356483 - AluSx SINE Alu 0 312 1 320 257 63 69 chrX 10617714 10617889 -166356251 + MIR3 SINE MIR 30 203 -5 2323 148 0 3 chrX 10618237 10618575 -166355565 - MER1B DNA MER1_type 0 337 1 198 0 0 0 chrX 10619096 10619118 -166355022 + (CA)n Simple_repeat Simple_repeat 2 23 0 22 35 0 0 chrX 10619301 10619330 -166354810 + AT_rich Low_complexity Low_complexity 1 29 0 2124 96 0 31 chrX 10619404 10619695 -166354445 - AluSx SINE Alu -8 304 23 230 285 30 85 chrX 10620714 10620914 -166353226 - MIR3 SINE MIR -1 207 19 1901 152 0 10 chrX 10621760 10622050 -166352090 - AluJb SINE Alu -25 287 1 512 197 51 8 chrX 10622050 10622167 -166351973 - MER58 DNA MER1_type -183 158 37 2005 108 7 28 chrX 10622320 10622606 -166351534 + AluSx SINE Alu 1 280 -32 185 0 0 39 chrX 10622607 10622633 -166351507 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 318 67 0 0 chrX 10622675 10622720 -166351420 + (TG)n Simple_repeat Simple_repeat 1 45 0 614 214 32 26 chrX 10622812 10622966 -166351174 - FRAM SINE Alu -16 160 6 1208 149 14 36 chrX 10623551 10623773 -166350367 + MER20 DNA MER1_type 1 217 -2 749 285 19 27 chrX 10623829 10624092 -166350048 - MARNA DNA Mariner -68 518 258 303 296 82 15 chrX 10624141 10624276 -166349864 - MIR SINE MIR -93 169 26 752 177 100 0 chrX 10624321 10624451 -166349689 + AluJb SINE Alu 131 273 -39 225 272 7 116 chrX 10624506 10624653 -166349487 - MARNA DNA Mariner -405 181 51 21 0 0 0 chrX 10624672 10624693 -166349447 + AT_rich Low_complexity Low_complexity 1 21 0 1478 170 31 71 chrX 10625045 10625115 -166349025 + L1M3 LINE L1 5079 5150 -1021 2109 111 27 0 chrX 10625115 10625413 -166348727 + AluSq SINE Alu 1 306 -7 1478 170 31 71 chrX 10625413 10625893 -166348247 + L1M3 LINE L1 5150 5607 -564 1822 164 18 0 chrX 10625894 10626168 -166347972 + AluSx SINE Alu 2 280 -32 1620 31 0 3 chrX 10626169 10626459 -166347681 + (GAGAA)n Simple_repeat Simple_repeat 1 289 0 1157 264 64 35 chrX 10627245 10627680 -166346460 + LTR16A LTR ERVL 1 448 -2 1837 209 12 10 chrX 10628115 10628527 -166345613 + L1 LINE L1 4356 4768 -1378 514 188 0 0 chrX 10628530 10628626 -166345514 + AluJ/FRAM SINE Alu 217 312 0 1921 111 37 37 chrX 10628649 10628946 -166345194 + AluSq SINE Alu 1 297 -16 2090 148 0 3 chrX 10628947 10629251 -166344889 + AluJb SINE Alu 1 303 -9 1633 213 10 33 chrX 10629254 10629643 -166344497 + L1ME1 LINE L1 4760 5139 -1007 3926 194 30 51 chrX 10629658 10630010 -166344130 + L1ME1 LINE L1 5254 5612 -554 2326 99 0 10 chrX 10630010 10630312 -166343828 + AluSx SINE Alu 1 299 -13 3926 194 30 51 chrX 10630312 10630886 -166343254 + L1ME1 LINE L1 5612 6161 -5 351 195 0 46 chrX 10631032 10631119 -166343021 - AluJ/FLAM SINE Alu -217 85 3 2372 118 8 21 chrX 10631306 10631680 -166342460 + THE1C LTR MaLR 7 375 0 1881 268 41 13 chrX 10631818 10631907 -166342233 + L1M4b LINE L1 16 101 -6758 1378 123 50 0 chrX 10631907 10632126 -166342014 - MER30 DNA MER1_type 0 230 1 1881 268 41 13 chrX 10632126 10632503 -166341637 + L1M4b LINE L1 101 495 -6364 1850 84 0 0 chrX 10632503 10632729 -166341411 + AluSg SINE Alu 1 226 -84 870 132 7 14 chrX 10632732 10632876 -166341264 + AluSg/x SINE Alu 170 312 0 2970 207 45 69 chrX 10632878 10633632 -166340508 + L1M4b LINE L1 486 1221 -5638 * 4169 23 8 0 chrX 10633630 10634113 -166340027 - L1P LINE L1 -1491 4655 4169 7594 34 0 0 chrX 10634113 10635578 -166338562 + L1PA4 LINE L1 4689 6153 -2 2454 249 43 47 chrX 10635580 10636285 -166337855 + L1M4b LINE L1 1199 1905 -5054 2275 96 10 0 chrX 10636285 10636577 -166337563 - AluSp SINE Alu -18 295 1 2454 249 43 47 chrX 10636577 10636981 -166337159 + L1M4b LINE L1 1905 2303 -4656 2290 77 0 7 chrX 10636981 10637311 -166336829 + AluY SINE Alu 1 328 0 2454 249 43 47 chrX 10637311 10637433 -166336707 + L1M4b LINE L1 2303 2424 -4535 319 241 0 0 chrX 10637578 10637661 -166336479 + L1M4b LINE L1 2476 2558 -4580 839 304 63 16 chrX 10638901 10639279 -166334861 - L1ME4a LINE L1 -278 5843 5448 399 315 8 0 chrX 10639342 10639469 -166334671 + MIR SINE MIR 40 167 -95 1909 201 37 22 chrX 10639590 10639967 -166334173 + Charlie4a DNA MER1_type 38 425 -1536 3433 101 61 22 chrX 10639967 10640474 -166333666 - MER1A DNA MER1_type 0 527 1 1909 201 37 22 chrX 10640474 10640558 -166333582 + Charlie4a DNA MER1_type 425 506 -2 273 298 7 57 chrX 10641864 10642005 -166332135 - MIR3 SINE MIR -2 206 73 207 0 0 0 chrX 10642364 10642387 -166331753 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2145 119 13 19 chrX 10642462 10642774 -166331366 + AluSx SINE Alu 1 310 -2 186 42 62 62 chrX 10642777 10642825 -166331315 + A-rich Low_complexity Low_complexity 1 48 0 * 665 208 6 0 chrX 10642821 10642989 -166331151 + GA-rich Low_complexity Low_complexity 2 170 0 423 0 0 0 chrX 10644159 10644206 -166329934 + (TG)n Simple_repeat Simple_repeat 2 48 0 1947 138 7 0 chrX 10644206 10644488 -166329652 - AluSx SINE Alu -25 287 1 2310 100 0 31 chrX 10644804 10644918 -166329222 + AluSx SINE Alu 3 119 -193 2499 90 0 0 chrX 10644918 10645229 -166328911 + AluY SINE Alu 1 311 0 2310 100 0 31 chrX 10645229 10645434 -166328706 + AluSx SINE Alu 119 312 0 2342 99 3 3 chrX 10646316 10646628 -166327512 - AluSq SINE Alu -1 312 1 889 217 26 22 chrX 10646811 10647041 -166327099 - MIR SINE MIR -28 234 4 184 186 0 47 chrX 10647148 10647191 -166326949 - L2 LINE L2 -541 2773 2733 2056 128 0 16 chrX 10647472 10647799 -166326341 - AluSx SINE Alu 0 312 1 673 132 166 102 chrX 10648229 10648434 -166325706 + MER20 DNA MER1_type 1 218 -1 2251 110 0 13 chrX 10648556 10648866 -166325274 - AluSx SINE Alu -6 306 1 197 326 58 12 chrX 10649346 10649432 -166324708 - L2 LINE L2 -20 3252 3163 1852 239 54 6 chrX 10649560 10650057 -166324083 - L1ME2 LINE L1 -1 6163 5643 233 256 0 39 chrX 10650304 10650382 -166323758 + MIR SINE MIR 183 257 -5 2047 132 0 49 chrX 10650536 10650863 -166323277 + AluJb SINE Alu 1 311 -1 1342 150 41 0 chrX 10651219 10651439 -166322701 + MER46A DNA MER2_type 5 233 -3 2289 87 17 13 chrX 10652677 10652975 -166321165 - AluSx SINE Alu -13 299 1 1185 185 39 15 chrX 10652989 10653248 -166320892 - L1MB2 LINE L1 -8 6163 5899 1323 97 101 10 chrX 10653248 10653447 -166320693 + MER30 DNA MER1_type 10 230 0 1960 114 46 3 chrX 10653447 10653753 -166320387 - L1MB2 LINE L1 -260 5911 5593 634 124 9 9 chrX 10653756 10653869 -166320271 + (TTCTC)n Simple_repeat Simple_repeat 3 115 0 1960 109 41 0 chrX 10654532 10654799 -166319341 - AluSx SINE Alu -34 278 1 373 194 43 50 chrX 10654801 10654940 -166319200 - L1MC5 LINE L1 -367 7594 7457 198 0 0 0 chrX 10655118 10655140 -166319000 + (A)n Simple_repeat Simple_repeat 1 22 0 1896 127 18 11 chrX 10655141 10655417 -166318723 - AluSx SINE Alu -34 278 1 207 100 0 0 chrX 10655960 10655990 -166318150 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 855 276 162 15 chrX 10655994 10656526 -166317614 - L2 LINE L2 -16 3297 2630 1235 220 106 48 chrX 10656526 10657045 -166317095 - MLT1H LTR MaLR 0 549 1 855 276 162 15 chrX 10657045 10657185 -166316955 - L2 LINE L2 -683 2630 2512 558 0 0 0 chrX 10657257 10657319 -166316821 + (TC)n Simple_repeat Simple_repeat 2 63 0 2348 100 0 7 chrX 10658094 10658395 -166315745 - AluSx SINE Alu -13 299 1 288 345 26 0 chrX 10658872 10658985 -166315155 - MIR3 SINE MIR -36 172 57 1075 175 3 126 chrX 10659875 10660160 -166313980 + AluJo SINE Alu 5 254 -58 2217 110 3 10 chrX 10660338 10660648 -166313492 - AluSx SINE Alu -4 308 1 2227 98 7 10 chrX 10661043 10661339 -166312801 - AluSx SINE Alu -14 298 4 847 164 71 38 chrX 10662173 10662229 -166311911 - MER5A DNA MER1_type 0 189 136 1843 166 0 19 chrX 10662229 10662543 -166311597 + AluJb SINE Alu 1 308 -4 847 164 71 38 chrX 10662543 10662669 -166311471 - MER5A DNA MER1_type -53 136 1 356 111 0 0 chrX 10662788 10662842 -166311298 + L1PA6 LINE L1 6092 6145 -9 327 261 0 22 chrX 10662847 10662939 -166311201 + L1MC4 LINE L1 6614 6703 -1339 210 191 0 0 chrX 10662939 10662981 -166311159 + (TG)n Simple_repeat Simple_repeat 2 43 0 3509 166 6 2 chrX 10662990 10663540 -166310600 - MER77 LTR ERV1 -36 569 18 672 221 19 6 chrX 10663811 10663969 -166310171 + L1MD1 LINE L1 5966 6125 -117 44458 43 5 0 chrX 10663984 10670105 -166304035 - L1PA4 LINE L1 0 6155 8 697 182 0 0 chrX 10670113 10670245 -166303895 + L1MD1 LINE L1 6110 6241 -1 665 102 339 0 chrX 10670297 10670424 -166303716 - Tigger2 DNA MER2_type 0 2718 2549 * 5270 142 11 25 chrX 10670421 10670814 -166303326 - Tigger2 DNA MER2_type -1863 855 458 2232 127 0 0 chrX 10670814 10671122 -166303018 - AluSx SINE Alu -4 308 1 5270 142 11 25 chrX 10671122 10671595 -166302545 - Tigger2 DNA MER2_type -2260 458 1 1253 180 0 14 chrX 10672256 10672473 -166301667 + MER20 DNA MER1_type 2 215 -4 348 250 10 40 chrX 10672955 10673004 -166301136 + CT-rich Low_complexity Low_complexity 1 50 -395 1937 87 79 0 chrX 10673004 10673257 -166300883 - AluSx SINE Alu -6 306 34 348 250 10 40 chrX 10673257 10673414 -166300726 + CT-rich Low_complexity Low_complexity 50 445 0 691 139 83 0 chrX 10673492 10673600 -166300540 - FLAM_C SINE Alu -16 117 1 355 138 23 0 chrX 10673968 10674055 -166300085 + (TG)n Simple_repeat Simple_repeat 2 90 0 1781 164 7 17 chrX 10674134 10674427 -166299713 + AluJo SINE Alu 6 295 -17 1430 203 70 17 chrX 10675220 10675764 -166298376 + L2 LINE L2 2727 3295 -18 2039 133 3 13 chrX 10675967 10676267 -166297873 - AluSx SINE Alu -15 297 1 705 253 48 9 chrX 10676473 10676780 -166297360 - MLT1J2 LTR MaLR -2 448 38 306 244 98 49 chrX 10677810 10677933 -166296207 + MIR3 SINE MIR 31 159 -49 193 304 80 45 chrX 10678357 10678469 -166295671 - L3 LINE CR1 -33 1544 1429 198 0 0 0 chrX 10678496 10678518 -166295622 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2064 112 0 0 chrX 10678521 10678790 -166295350 - AluSx SINE Alu -38 274 6 196 293 57 57 chrX 10679307 10679430 -166294710 + L3 LINE CR1 1429 1551 -26 4245 147 53 36 chrX 10680118 10680164 -166293976 - L1MB8 LINE L1 -22 6156 6112 2291 106 3 0 chrX 10680164 10680457 -166293683 + AluSp SINE Alu 1 294 -19 4245 147 53 36 chrX 10680457 10681233 -166292907 - L1MB8 LINE L1 -66 6112 5320 2918 201 42 23 chrX 10681246 10681942 -166292198 - L1MC4 LINE L1 0 8042 7334 * 5538 203 31 33 chrX 10681938 10683319 -166290821 - L1MB8 LINE L1 -807 5339 3961 1898 148 13 31 chrX 10683398 10683716 -166290424 + AluJb SINE Alu 1 312 0 282 100 0 0 chrX 10683780 10683820 -166290320 - MADE1 DNA Mariner -1 79 40 2341 237 82 25 chrX 10683919 10684199 -166289941 - L1ME3 LINE L1 0 6162 5899 2049 133 0 3 chrX 10684199 10684499 -166289641 + AluJo SINE Alu 1 299 -13 2341 237 82 25 chrX 10684499 10684853 -166289287 - L1ME3 LINE L1 -263 5899 5486 1736 144 33 52 chrX 10684853 10685159 -166288981 - AluJb SINE Alu -12 300 1 2341 237 82 25 chrX 10685159 10685195 -166288945 - L1ME3 LINE L1 -676 5486 5453 616 289 134 67 chrX 10685405 10685673 -166288467 + L3 LINE CR1 850 1099 -478 1953 135 24 14 chrX 10685673 10685970 -166288170 + AluJb SINE Alu 1 300 -12 616 289 134 67 chrX 10685970 10686356 -166287784 + L3 LINE CR1 1099 1548 -29 1149 164 84 0 chrX 10687502 10687740 -166286400 + MLT2B2 LTR ERVL 254 511 -4 198 0 0 0 chrX 10687790 10687812 -166286328 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 408 298 118 52 chrX 10687816 10688179 -166285961 + L1ME2 LINE L1 5612 5998 -123 2167 109 3 42 chrX 10688284 10688597 -166285543 - AluSx SINE Alu -11 301 1 815 160 47 99 chrX 10688688 10688901 -166285239 - MER105 DNA DNA -1 203 2 1478 116 48 0 chrX 10689292 10689499 -166284641 - AluJb SINE Alu -9 303 87 356 171 248 0 chrX 10689889 10689931 -166284209 + MER5B DNA MER1_type 1 31 -147 2354 93 10 3 chrX 10689931 10690242 -166283898 + AluSq SINE Alu 1 313 0 356 171 248 0 chrX 10690242 10690304 -166283836 + MER5B DNA MER1_type 31 131 -47 2351 235 160 30 chrX 10690337 10690736 -166283404 + L2 LINE L2 1912 2258 -1055 1718 171 0 30 chrX 10690736 10691035 -166283105 - AluSx SINE Alu -22 290 1 2351 235 160 30 chrX 10691035 10691866 -166282274 + L2 LINE L2 2258 3311 -2 1593 141 32 35 chrX 10692167 10692450 -166281690 - AluJb SINE Alu -18 294 13 181 289 12 72 chrX 10692523 10692606 -166281534 + MIR SINE MIR 58 135 -127 1812 123 4 0 chrX 10692971 10693214 -166280926 + AluSq SINE Alu 3 246 -67 1294 166 14 0 chrX 10693215 10693426 -166280714 + MSTB LTR MaLR 213 426 0 455 148 35 112 chrX 10693433 10693533 -166280607 + L1ME2 LINE L1 6041 6147 -187 1664 162 17 24 chrX 10693533 10693823 -166280317 - AluJo SINE Alu -24 288 1 455 148 35 112 chrX 10693823 10693865 -166280275 + L1ME2 LINE L1 6147 6332 -2 1501 231 95 31 chrX 10693920 10694406 -166279734 + LTR33A LTR ERVL 7 523 0 649 259 6 0 chrX 10694870 10695028 -166279112 + MLT1J2 LTR MaLR 24 182 -268 1467 139 48 7 chrX 10695038 10695311 -166278829 + L1MB8 LINE L1 5726 6009 -169 818 117 24 169 chrX 10695334 10695532 -166278608 + L1MB8 LINE L1 5961 6118 -60 1533 155 75 22 chrX 10695532 10695810 -166278330 - AluJo SINE Alu -19 293 1 818 117 24 169 chrX 10695810 10695859 -166278281 + L1MB8 LINE L1 6118 6172 -6 655 247 154 28 chrX 10695873 10696120 -166278020 + MLT1J2 LTR MaLR 173 450 0 1244 128 0 0 chrX 10696574 10696738 -166277402 - AluSg/x SINE Alu -13 299 136 380 20 20 0 chrX 10696739 10696788 -166277352 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2189 105 0 3 chrX 10696788 10697073 -166277067 - AluSx SINE Alu -28 284 1 * 2450 103 0 0 chrX 10697072 10697382 -166276758 - AluSx SINE Alu -2 310 1 350 328 82 31 chrX 10697383 10697837 -166276303 - L2 LINE L2 -7 3306 2833 981 261 18 70 chrX 10698989 10699318 -166274822 + LTR16C LTR ERVL 179 490 -1 2290 113 3 0 chrX 10699358 10699659 -166274481 + AluSx SINE Alu 1 302 -10 2078 118 0 14 chrX 10699710 10700036 -166274104 + AluSq SINE Alu 1 322 0 49 32 0 0 chrX 10700902 10700965 -166273175 + AT_rich Low_complexity Low_complexity 1 63 0 1515 153 95 11 chrX 10700981 10701243 -166272897 - AluJo SINE Alu -28 284 1 331 307 10 10 chrX 10701284 10701385 -166272755 - MIR SINE MIR -91 117 17 2821 13 0 3 chrX 10701651 10701959 -166272181 + AluYa5 SINE Alu 1 307 -4 640 215 126 37 chrX 10703740 10703954 -166270186 + Charlie1b DNA MER1_type 10 242 -281 366 250 12 12 chrX 10704106 10704190 -166269950 + Tigger2 DNA MER2_type 2632 2715 -3 843 164 55 41 chrX 10704246 10704466 -166269674 - L1MB4 LINE L1 -210 5970 5748 1294 197 91 18 chrX 10704467 10704807 -166269333 + MLT1A1 LTR MaLR 1 365 0 234 299 72 0 chrX 10705474 10705571 -166268569 - MIR SINE MIR -21 241 138 216 182 0 0 chrX 10706903 10706947 -166267193 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2271 138 24 29 chrX 10707103 10707476 -166266664 - L1MB5 LINE L1 -216 5958 5586 1174 205 107 60 chrX 10707476 10707823 -166266317 + MLT1A1 LTR MaLR 3 365 0 2271 138 24 29 chrX 10707823 10707868 -166266272 - L1MB5 LINE L1 -588 5586 5542 456 292 152 14 chrX 10708350 10708627 -166265513 - L2 LINE L2 -1006 2308 1994 1482 165 96 38 chrX 10709734 10710079 -166264061 - MLT1A1 LTR MaLR 0 365 1 371 177 62 21 chrX 10710559 10710655 -166263485 + L1ME1 LINE L1 5792 5891 -275 1546 174 14 11 chrX 10710659 10710935 -166263205 + AluJb SINE Alu 7 283 -29 2336 90 17 3 chrX 10711399 10711700 -166262440 - AluSc SINE Alu -2 307 3 1047 109 0 34 chrX 10711701 10711848 -166262292 - AluSq/x SINE Alu -171 142 1 801 111 24 0 chrX 10714437 10714563 -166259577 - AluSg/x SINE Alu -15 294 166 1622 114 5 0 chrX 10714664 10714884 -166259256 - AluSx SINE Alu -90 222 2 3714 94 76 26 chrX 10715020 10715382 -166258758 - MER39B LTR ERV1 -4 649 307 2216 98 0 23 chrX 10715382 10715688 -166258452 - AluSx SINE Alu -13 299 1 2211 98 27 0 chrX 10715695 10715991 -166258149 - AluSp SINE Alu -9 304 1 3714 94 76 26 chrX 10715991 10716238 -166257902 - MER39B LTR ERV1 -351 302 1 316 259 65 41 chrX 10716406 10716576 -166257564 + MIR SINE MIR 81 254 -8 1813 98 12 8 chrX 10716655 10716909 -166257231 + AluSx SINE Alu 1 255 -57 2229 96 16 19 chrX 10717362 10717675 -166256465 + AluSx SINE Alu 1 312 0 2135 252 65 13 chrX 10719695 10720310 -166253830 + L1MC4a LINE L1 5279 5925 -1883 265 191 62 25 chrX 10720430 10720592 -166253548 + (TA)n Simple_repeat Simple_repeat 1 168 0 1238 122 0 0 chrX 10720644 10720808 -166253332 - AluSg/x SINE Alu -16 296 133 1261 166 12 95 chrX 10721073 10721272 -166252868 - AluJb SINE Alu 0 312 151 1866 94 97 4 chrX 10721272 10721539 -166252601 - AluSg SINE Alu -16 294 3 1261 166 12 95 chrX 10721539 10721677 -166252463 - AluJb SINE Alu -161 151 3 242 210 32 0 chrX 10721682 10721744 -166252396 - AluJ/monomer SINE Alu 0 302 239 473 181 9 67 chrX 10721951 10722056 -166252084 - Tigger7 DNA MER2_type -1 2490 2392 * 1450 183 28 0 chrX 10722053 10722305 -166251835 - Tigger7 DNA MER2_type -2220 267 9 474 157 36 121 chrX 10722431 10722474 -166251666 - MER5A DNA MER1_type -3 186 141 1919 159 7 0 chrX 10722474 10722769 -166251371 - AluJb SINE Alu -15 297 1 474 157 36 121 chrX 10722769 10722865 -166251275 - MER5A DNA MER1_type -48 141 59 18495 38 2 4 chrX 10723107 10725356 -166248784 + L1P LINE L1 2679 4924 -1222 198 333 15 0 chrX 10725509 10725575 -166248565 + L2 LINE L2 2750 2816 -498 330 259 146 62 chrX 10725648 10725969 -166248171 + L2 LINE L2 2948 3295 -18 2578 60 0 0 chrX 10726135 10726433 -166247707 - AluSc SINE Alu -11 298 1 3048 157 68 28 chrX 10726445 10726567 -166247573 - L1MB8 LINE L1 0 6178 6062 2406 113 16 34 chrX 10726567 10726949 -166247191 + THE1C LTR MaLR 1 375 0 3048 157 68 28 chrX 10726949 10727431 -166246709 - L1MB8 LINE L1 -116 6062 5550 4253 151 11 27 chrX 10727590 10727663 -166246477 - L1MA3 LINE L1 -300 6005 5932 189 0 0 0 chrX 10727663 10727684 -166246456 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4253 151 11 27 chrX 10727684 10728467 -166245673 - L1MA3 LINE L1 -373 5932 5161 441 213 287 22 chrX 10728644 10728874 -166245266 - LTR50 LTR ERVL 0 795 505 414 183 204 29 chrX 10728972 10729109 -166245031 - LTR50 LTR ERVL -599 196 36 616 205 6 66 chrX 10729413 10729579 -166244561 - MER3 DNA MER1_type -41 168 13 201 74 0 0 chrX 10729695 10729722 -166244418 + (T)n Simple_repeat Simple_repeat 1 27 0 4712 191 48 33 chrX 10729828 10729945 -166244195 - L1MB8 LINE L1 -646 5532 5418 2213 107 11 0 chrX 10729945 10730267 -166243873 - AluSx SINE Alu 0 325 1 4712 191 48 33 chrX 10730267 10731388 -166242752 - L1MB8 LINE L1 -760 5418 4285 2275 131 0 0 chrX 10731430 10731742 -166242398 - AluSx SINE Alu 0 312 1 442 285 28 34 chrX 10731845 10732024 -166242116 - HAL1b LINE L1 -812 536 359 1880 204 48 12 chrX 10732403 10732824 -166241316 + MER63B DNA MER1_type 1 436 0 23 0 0 0 chrX 10732875 10732898 -166241242 + AT_rich Low_complexity Low_complexity 1 23 0 1971 243 63 30 chrX 10733979 10734538 -166239602 - MLT1K LTR MaLR -2 586 10 609 251 97 8 chrX 10735419 10735666 -166238474 - L1ME LINE L1 -608 5556 5288 261 0 0 0 chrX 10735714 10735743 -166238397 + (CA)n Simple_repeat Simple_repeat 2 30 0 273 280 98 81 chrX 10735956 10736427 -166237713 - L1MB8 LINE L1 -1944 4202 3724 22 35 0 0 chrX 10736500 10736529 -166237611 + AT_rich Low_complexity Low_complexity 1 29 0 14037 72 4 1 chrX 10736598 10738388 -166235752 + L1P LINE L1 7 1801 -4345 1854 88 92 0 chrX 10738501 10738773 -166235367 + L1PA13 LINE L1 5867 6163 0 2479 68 0 40 chrX 10739017 10739341 -166234799 - AluY SINE Alu 0 311 1 2222 112 0 3 chrX 10739343 10739646 -166234494 - AluSx SINE Alu -10 302 1 1607 171 4 11 chrX 10739950 10740231 -166233909 + AluJo SINE Alu 24 302 -10 869 116 0 0 chrX 10740734 10740846 -166233294 + FLAM_C SINE Alu 14 125 -18 242 306 82 41 chrX 10740906 10741053 -166233087 + L1MC4 LINE L1 6460 6612 -1430 273 57 0 0 chrX 10741068 10741103 -166233037 + (CA)n Simple_repeat Simple_repeat 2 36 0 1810 175 3 0 chrX 10741107 10741398 -166232742 + AluJb SINE Alu 1 292 -20 21 0 0 0 chrX 10741850 10741871 -166232269 + AT_rich Low_complexity Low_complexity 1 21 0 895 247 94 65 chrX 10741891 10742381 -166231759 + L1ME4a LINE L1 5513 6016 -105 1239 126 143 116 chrX 10743243 10743339 -166230801 + AluJb SINE Alu 2 94 -208 2208 117 0 0 chrX 10743339 10743629 -166230511 + AluSx SINE Alu 1 290 -22 1239 126 143 116 chrX 10743629 10743825 -166230315 + AluJb SINE Alu 94 302 0 349 174 312 0 chrX 10744308 10744417 -166229723 - MER5A DNA MER1_type 0 189 47 1631 260 78 22 chrX 10744458 10744480 -166229660 - MLT1L LTR MaLR -50 565 546 2534 94 30 22 chrX 10744480 10744841 -166229299 - THE1B LTR MaLR 0 364 1 1631 260 78 22 chrX 10744841 10745353 -166228787 - MLT1L LTR MaLR -69 546 1 1859 163 12 12 chrX 10746316 10746647 -166227493 + MER67C LTR ERV1 375 705 -5 772 136 0 0 chrX 10746897 10747015 -166227125 + FLAM_A SINE Alu 20 137 -5 2169 110 17 0 chrX 10747092 10747384 -166226756 - AluSx SINE Alu -15 297 1 822 288 83 6 chrX 10747719 10748056 -166226084 - LTR16B LTR ERVL 0 464 102 1870 157 23 3 chrX 10748527 10748713 -166225427 - AluJb SINE Alu 0 312 116 216 0 0 0 chrX 10748713 10748737 -166225403 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1870 157 23 3 chrX 10748737 10748856 -166225284 - AluJb SINE Alu -196 116 1 2247 112 0 3 chrX 10748866 10749169 -166224971 - AluSx SINE Alu -10 302 1 454 266 129 17 chrX 10749318 10749551 -166224589 + L1ME4a LINE L1 5591 5849 -272 2443 78 0 10 chrX 10749594 10749902 -166224238 + AluSx SINE Alu 6 310 -2 1030 195 19 28 chrX 10750100 10750315 -166223825 - MER20 DNA MER1_type -4 215 3 563 272 74 28 chrX 10751069 10751352 -166222788 - L2 LINE L2 -371 2943 2648 660 239 64 93 chrX 10752460 10752821 -166221319 - L1MC/D LINE L1 -743 5403 5215 1829 165 3 22 chrX 10752821 10753137 -166221003 - AluJo SINE Alu -2 310 1 660 239 64 93 chrX 10753137 10753467 -166220673 - L1MC/D LINE L1 -931 5215 4877 1056 165 48 96 chrX 10753490 10753641 -166220499 + MER8 DNA MER2_type 3 139 -100 2422 105 0 0 chrX 10753641 10753946 -166220194 - AluSx SINE Alu -7 305 1 1056 165 48 96 chrX 10753946 10754043 -166220097 + MER8 DNA MER2_type 139 239 0 21 0 0 0 chrX 10754043 10754064 -166220076 + AT_rich Low_complexity Low_complexity 1 21 0 574 235 133 20 chrX 10754064 10754260 -166219880 - MIR SINE MIR -5 257 40 287 235 74 12 chrX 10754275 10754356 -166219784 + L1ME LINE L1 5605 5690 -480 334 286 41 41 chrX 10754368 10754588 -166219552 - L1MC/D LINE L1 -1310 4836 4617 1889 159 0 3 chrX 10754597 10754887 -166219253 + AluJo SINE Alu 2 290 -22 467 299 42 0 chrX 10754949 10755116 -166219024 + MIR SINE MIR 12 185 -77 380 224 47 9 chrX 10755513 10755620 -166218520 - L1ME3 LINE L1 -218 5944 5834 403 235 0 0 chrX 10756737 10756818 -166217322 + MIR SINE MIR 3 83 -179 829 246 27 48 chrX 10756991 10757321 -166216819 - L1MC4 LINE L1 -3 8039 7717 523 194 29 7 chrX 10757317 10757456 -166216684 + L1 LINE L1 3064 3205 -2941 * 1388 101 0 0 chrX 10757456 10757635 -166216505 + AluSg/x SINE Alu 133 311 -1 356 139 89 0 chrX 10757637 10757716 -166216424 + L1 LINE L1 3196 3281 -2865 236 222 120 9 chrX 10757917 10758025 -166216115 - L1 LINE L1 -1959 4187 4068 889 289 56 34 chrX 10758026 10758382 -166215758 + MLT1L LTR MaLR 1 364 -251 2615 143 59 5 chrX 10758382 10758821 -166215319 + ERVL-D LTR ERVL 5295 5757 -7 1450 187 142 14 chrX 10758821 10759161 -166214979 + MLT2D LTR ERVL 1 336 -78 1829 147 88 0 chrX 10759243 10759563 -166214577 + MER7A DNA MER2_type 1 346 0 635 229 39 0 chrX 10760238 10760391 -166213749 + MER5B DNA MER1_type 20 178 0 2110 132 6 10 chrX 10760515 10760826 -166213314 - AluSx SINE Alu -2 310 1 944 224 9 31 chrX 10760846 10761069 -166213071 + MER58A DNA MER1_type 3 220 -4 387 169 0 0 chrX 10761311 10761382 -166212758 + (TG)n Simple_repeat Simple_repeat 2 72 0 1023 150 0 42 chrX 10761383 10761550 -166212590 - AluJb SINE Alu -19 293 134 1716 195 0 7 chrX 10761550 10761852 -166212288 - AluJo SINE Alu -12 300 1 451 198 10 20 chrX 10762303 10762404 -166211736 - LTR33 LTR ERVL -420 101 2 309 131 0 0 chrX 10762459 10762520 -166211620 + (TA)n Simple_repeat Simple_repeat 2 62 0 822 120 8 0 chrX 10762521 10762638 -166211502 - FLAM_C SINE Alu -15 118 1 294 297 21 73 chrX 10762821 10763013 -166211127 - L2 LINE L2 -267 3046 2865 182 277 53 21 chrX 10763093 10763187 -166210953 + MIR3 SINE MIR 91 187 -21 663 283 46 33 chrX 10763291 10763595 -166210545 + LTR16C LTR ERVL 2 309 -182 21 0 0 0 chrX 10763758 10763779 -166210361 + AT_rich Low_complexity Low_complexity 1 21 0 2411 77 0 3 chrX 10763782 10764081 -166210059 - AluSx SINE Alu -14 298 1 28 48 0 0 chrX 10764435 10764477 -166209663 + AT_rich Low_complexity Low_complexity 1 42 0 2262 97 7 10 chrX 10765234 10765542 -166208598 + AluSx SINE Alu 1 307 -5 259 191 26 26 chrX 10766441 10766556 -166207584 + GA-rich Low_complexity Low_complexity 4 118 0 399 227 50 28 chrX 10766557 10766756 -166207384 + G-rich Low_complexity Low_complexity 1 203 0 757 100 0 18 chrX 10767071 10767181 -166206959 - AluSg/x SINE Alu -23 289 182 407 101 22 45 chrX 10767203 10767292 -166206848 - LTR3 LTR ERVK -16 416 330 377 130 0 0 chrX 10767280 10767334 -166206806 - Alu SINE Alu -248 54 1 * 858 252 5 23 chrX 10767437 10767655 -166206485 - MIR SINE MIR -21 241 28 842 136 0 0 chrX 10767841 10767959 -166206181 + FLAM_C SINE Alu 1 118 -25 1046 149 120 130 chrX 10768271 10768587 -166205553 + MLT1A1 LTR MaLR 1 313 -52 2007 159 0 0 chrX 10768613 10768914 -166205226 - AluJb SINE Alu -11 301 1 334 254 26 0 chrX 10768915 10769029 -166205111 + L1ME3 LINE L1 6040 6156 -6 2402 159 82 0 chrX 10769768 10770207 -166203933 - L1M4 LINE L1 -384 5863 5389 2918 201 42 23 chrX 10770220 10770916 -166203224 - L1MC4 LINE L1 0 8042 7334 * 5079 212 30 37 chrX 10770912 10772301 -166201839 - L1M4 LINE L1 -807 5408 4030 1688 139 20 41 chrX 10772380 10772674 -166201466 + AluJb SINE Alu 1 288 -24 1039 226 20 44 chrX 10772678 10773122 -166201018 + L2 LINE L2 2720 3149 -164 476 283 50 96 chrX 10773218 10773561 -166200579 - MLT1J2 LTR MaLR -107 343 17 505 267 8 8 chrX 10773585 10773716 -166200424 + L2 LINE L2 3182 3312 -1 10987 150 47 8 chrX 10774319 10777131 -166197009 + L1MA9 LINE L1 3238 6178 -134 231 36 0 0 chrX 10777131 10777159 -166196981 + (CA)n Simple_repeat Simple_repeat 1 28 0 10987 150 47 8 chrX 10777159 10777300 -166196840 + L1MA9 LINE L1 6178 6312 0 1030 295 91 22 chrX 10777506 10777835 -166196305 + L2 LINE L2 2651 2956 -357 1856 134 42 0 chrX 10777835 10778125 -166196015 - AluJb SINE Alu 0 311 11 1030 295 91 22 chrX 10778125 10778404 -166195736 + L2 LINE L2 2956 3312 -1 2077 142 0 3 chrX 10779045 10779354 -166194786 + AluJo SINE Alu 3 310 -2 2761 82 5 14 chrX 10779880 10780247 -166193893 + THE1B LTR MaLR 1 364 0 410 217 43 0 chrX 10780342 10780434 -166193706 - MIR SINE MIR -70 192 97 227 208 167 0 chrX 10780981 10781053 -166193087 + MIR SINE MIR 77 160 -102 2282 181 56 38 chrX 10781381 10781649 -166192491 - L1M4 LINE L1 -3145 3070 2808 2860 164 34 27 chrX 10781649 10781666 -166192474 + MER74A LTR ERVL 1 16 -542 1822 136 3 34 chrX 10781666 10781999 -166192141 - AluJb SINE Alu 0 324 1 2860 164 34 27 chrX 10781999 10782534 -166191606 + MER74A LTR ERVL 16 558 0 2282 181 56 38 chrX 10782534 10782838 -166191302 - L1M4 LINE L1 -3407 2808 2488 685 272 43 39 chrX 10782941 10782978 -166191162 - L1M4 LINE L1 -5882 514 479 2504 78 3 0 chrX 10782978 10783286 -166190854 - AluSx SINE Alu -3 309 1 685 272 43 39 chrX 10783286 10783480 -166190660 - L1M4 LINE L1 -5917 479 282 808 218 26 0 chrX 10783487 10783643 -166190497 - MER45A DNA AcHobo -1 177 18 1091 157 31 63 chrX 10783643 10783898 -166190242 - THE1C LTR MaLR 0 375 129 328 260 130 96 chrX 10784353 10784737 -166189403 - MLT1J LTR MaLR -3 508 112 2306 92 3 19 chrX 10785701 10786015 -166188125 + AluSx SINE Alu 1 309 -3 1913 113 77 47 chrX 10786254 10786618 -166187522 + THE1C LTR MaLR 1 375 0 572 284 6 18 chrX 10787156 10787325 -166186815 + MIR3 SINE MIR 37 203 -5 1645 129 0 0 chrX 10787830 10788055 -166186085 + AluSx SINE Alu 1 225 -87 1191 93 66 85 chrX 10789345 10789530 -166184610 + L1MB8 LINE L1 5925 6105 -73 1909 162 0 3 chrX 10789530 10789827 -166184313 + AluJo SINE Alu 1 296 -16 1191 93 66 85 chrX 10789827 10789900 -166184240 + L1MB8 LINE L1 6105 6178 0 189 0 0 0 chrX 10789969 10789990 -166184150 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 480 18 0 0 chrX 10789989 10790046 -166184094 + (CA)n Simple_repeat Simple_repeat 1 57 0 2366 107 0 0 chrX 10790809 10791109 -166183031 + AluSx SINE Alu 1 300 -12 361 292 83 7 chrX 10791626 10791770 -166182370 - MIR SINE MIR -21 241 87 2136 189 57 29 chrX 10792003 10792494 -166181646 + MLT1D LTR MaLR 1 505 0 1024 188 77 14 chrX 10792519 10792727 -166181413 + MER58A DNA MER1_type 1 221 -3 25 0 0 0 chrX 10793033 10793058 -166181082 + AT_rich Low_complexity Low_complexity 1 25 0 232 238 0 63 chrX 10793219 10793282 -166180858 + MLT1L LTR MaLR 142 200 -415 321 266 35 9 chrX 10793376 10793489 -166180651 + MLT1L LTR MaLR 496 611 -4 251 295 86 43 chrX 10793490 10793700 -166180440 + L2 LINE L2 2065 2283 -1031 418 354 0 19 chrX 10793719 10793880 -166180260 - MER5B DNA MER1_type -17 161 4 768 129 60 164 chrX 10794177 10794409 -166179731 + MER3 DNA MER1_type 2 209 0 537 238 52 87 chrX 10794527 10794779 -166179361 + MER112 DNA MER1_type 18 260 0 277 346 87 22 chrX 10795914 10796281 -166177859 - L2 LINE L2 -54 3218 2828 1223 177 63 41 chrX 10796889 10797160 -166176980 - MER67C LTR ERV1 -433 277 1 2162 103 80 9 chrX 10797498 10797848 -166176292 + THE1C LTR MaLR 1 375 0 1815 108 50 0 chrX 10798623 10798902 -166175238 - AluSx SINE Alu -19 293 1 838 201 6 0 chrX 10799098 10799257 -166174883 + MLT1C LTR MaLR 1 160 -230 221 171 0 0 chrX 10799261 10799302 -166174838 + T-rich Low_complexity Low_complexity 1 41 0 755 73 0 0 chrX 10799304 10799400 -166174740 - HY3 scRNA scRNA -5 96 1 1727 151 7 0 chrX 10799429 10799714 -166174426 + AluJo SINE Alu 1 287 -25 1048 227 51 16 chrX 10799772 10800028 -166174112 + MLT1C LTR MaLR 203 467 0 906 239 159 49 chrX 10800954 10801401 -166172739 - MLT1H LTR MaLR -4 545 50 265 310 103 0 chrX 10801844 10801960 -166172180 + L2 LINE L2 2226 2353 -961 356 290 123 43 chrX 10802153 10802315 -166171825 - L3 LINE CR1 -48 1529 1355 216 0 0 0 chrX 10802324 10802348 -166171792 + (CA)n Simple_repeat Simple_repeat 1 24 0 660 254 105 10 chrX 10802418 10802627 -166171513 + MLT1I LTR MaLR 16 244 -165 533 343 31 42 chrX 10802750 10803039 -166171101 - L3 LINE CR1 -374 1203 918 258 179 30 30 chrX 10803781 10803848 -166170292 + (CGGGG)n Simple_repeat Simple_repeat 2 68 0 360 330 2 0 chrX 10804147 10804274 -166169866 + MIR SINE MIR 2 130 -78 443 203 44 95 chrX 10804323 10804481 -166169659 + MIR SINE MIR 110 259 -3 30607 30 3 0 chrX 10804744 10809136 -166165004 + L1PA4 LINE L1 1740 6142 -13 1390 134 26 37 chrX 10809259 10809528 -166164612 - AluJo SINE Alu -22 290 25 25 0 0 0 chrX 10809893 10809918 -166164222 + AT_rich Low_complexity Low_complexity 1 25 0 316 122 0 0 chrX 10809918 10809959 -166164181 - AluJo SINE Alu -45 257 217 840 152 18 43 chrX 10809959 10810123 -166164017 - AluJo SINE Alu -152 160 1 2240 95 0 3 chrX 10811590 10811894 -166162246 + AluSq SINE Alu 1 303 -10 2165 102 0 7 chrX 10813938 10814243 -166159897 - AluSx SINE Alu -9 303 1 566 136 164 0 chrX 10814245 10814355 -166159785 - AluJo/FLAM SINE Alu -174 128 1 2059 107 3 32 chrX 10814368 10814678 -166159462 - AluSq SINE Alu -12 301 1 642 187 24 6 chrX 10814699 10814895 -166159245 + MER8 DNA MER2_type 3 233 -6 1300 188 58 52 chrX 10815159 10815504 -166158636 + MER7A DNA MER2_type 1 345 -1 1788 111 57 4 chrX 10815839 10816119 -166158021 - AluSc SINE Alu -14 295 1 228 296 68 0 chrX 10816856 10816944 -166157196 - MER5C DNA MER1_type -200 124 31 1940 126 3 3 chrX 10818092 10818397 -166155743 + AluJo SINE Alu 1 305 0 1158 143 27 49 chrX 10820031 10820254 -166153886 - MER20 DNA MER1_type -1 218 1 1013 235 14 0 chrX 10821061 10821278 -166152862 - LTR33 LTR ERVL -301 220 1 645 107 0 29 chrX 10822162 10822265 -166151875 + AluSc SINE Alu 202 301 -8 442 250 117 8 chrX 10822757 10822877 -166151263 - MER94 DNA DNA 0 134 2 667 247 47 0 chrX 10822881 10823051 -166151089 - MER5B DNA MER1_type 0 178 1 2043 116 6 3 chrX 10823614 10823925 -166150215 - AluSx SINE Alu 0 312 1 220 179 0 0 chrX 10823968 10824007 -166150133 + L2 LINE L2 3234 3272 0 409 247 49 121 chrX 10824083 10824354 -166149786 - MIR SINE MIR -6 256 19 1023 115 0 36 chrX 10824658 10824823 -166149317 - FRAM SINE Alu 0 40 1 200 273 109 27 chrX 10825090 10825200 -166148940 + L2 LINE L2 1913 2031 -1283 209 307 95 51 chrX 10825201 10825338 -166148802 + MIR SINE MIR 120 262 0 208 387 39 70 chrX 10825817 10826101 -166148039 + L2 LINE L2 2973 3247 -25 271 208 0 19 chrX 10826117 10826170 -166147970 + MIR3 SINE MIR 134 185 -23 360 303 110 45 chrX 10826292 10826447 -166147693 + MIR3 SINE MIR 14 178 -30 191 129 0 0 chrX 10826613 10826644 -166147496 - L3 LINE CR1 -494 1083 1053 2012 119 0 13 chrX 10826754 10827056 -166147084 - AluSx SINE Alu -14 298 1 21 0 0 0 chrX 10827286 10827307 -166146833 + AT_rich Low_complexity Low_complexity 1 21 0 928 176 6 0 chrX 10827312 10827471 -166146669 + AluJb SINE Alu 128 287 -25 2096 76 56 7 chrX 10827648 10827936 -166146204 + AluSx SINE Alu 1 302 -10 826 227 191 20 chrX 10828805 10829056 -166145084 + AluJo SINE Alu 2 295 -17 272 115 103 0 chrX 10829069 10829156 -166144984 + (TA)n Simple_repeat Simple_repeat 1 96 0 1297 112 0 0 chrX 10829162 10829341 -166144799 + AluJb SINE Alu 133 311 -1 1741 257 45 11 chrX 10830331 10830864 -166143276 - L1MB8 LINE L1 0 6178 5628 988 216 27 9 chrX 10830886 10831108 -166143032 + MIR SINE MIR 32 257 -5 186 195 0 24 chrX 10831128 10831169 -166142971 - MIR3 SINE MIR -6 202 163 691 83 31 0 chrX 10831383 10831479 -166142661 + AluSg/x SINE Alu 192 290 -19 289 112 0 44 chrX 10831893 10831947 -166142193 - MER57A LTR ERV1 -67 336 295 1852 126 0 0 chrX 10831969 10832232 -166141908 + AluJo SINE Alu 18 280 -32 2143 111 3 0 chrX 10833158 10833464 -166140676 - AluSx SINE Alu -5 307 1 302 288 0 0 chrX 10833915 10833981 -166140159 + MIR SINE MIR 90 155 -107 1755 194 106 37 chrX 10834084 10834517 -166139623 + MLT1F LTR MaLR 1 463 -79 394 231 167 0 chrX 10835288 10835396 -166138744 - MIR SINE MIR -76 186 61 1452 130 138 8 chrX 10835705 10835966 -166138174 - AluJb SINE Alu -17 295 1 904 117 0 15 chrX 10838921 10839058 -166135082 - AluJb SINE Alu -23 289 155 2073 227 129 6 chrX 10890670 10891189 -166082951 - L1ME1 LINE L1 -3 6163 5581 1663 173 0 13 chrX 10891193 10891505 -166082635 + AluJo SINE Alu 3 310 -2 372 275 49 57 chrX 10891535 10891782 -166082358 - L1ME1 LINE L1 -1801 4345 4101 1886 115 14 7 chrX 10892045 10892340 -166081800 - AluSx SINE Alu -13 299 3 2402 48 7 0 chrX 10892505 10892796 -166081344 - L1PA7 LINE L1 -28 6126 5834 270 281 62 0 chrX 10892823 10892919 -166081221 - L1ME LINE L1 -335 5835 5734 513 165 0 0 chrX 10893003 10893082 -166081058 + FLAM_A SINE Alu 43 121 -21 1032 103 0 0 chrX 10893129 10893265 -166080875 - AluSq/x SINE Alu -177 136 1 2162 113 0 13 chrX 10893275 10893585 -166080555 - AluSx SINE Alu -5 307 2 3228 127 23 8 chrX 10894618 10895147 -166078993 - MER41B LTR ERV1 0 635 99 337 323 173 13 chrX 10895522 10895747 -166078393 + MIR SINE MIR 2 260 -2 320 175 311 0 chrX 10895907 10896010 -166078130 + MIR3 SINE MIR 46 180 -28 196 271 57 14 chrX 10896093 10896163 -166077977 - MER5A DNA MER1_type -10 179 107 629 188 214 16 chrX 10896164 10896356 -166077784 + MER33 DNA MER1_type 3 232 -92 1910 144 3 0 chrX 10896441 10896732 -166077408 + AluJb SINE Alu 1 292 -20 225 0 0 0 chrX 10896732 10896757 -166077383 + (TA)n Simple_repeat Simple_repeat 1 25 0 537 186 25 0 chrX 10896785 10896903 -166077237 + MER33 DNA MER1_type 204 324 0 227 294 50 22 chrX 10897921 10897956 -166076184 + L1MDa LINE L1 1910 1943 -4597 1084 138 0 126 chrX 10897956 10898009 -166076131 - MER6B DNA MER2_type -655 210 152 2061 123 3 0 chrX 10898009 10898317 -166075823 + AluSg SINE Alu 1 309 -1 1084 138 0 126 chrX 10898317 10898502 -166075638 - MER6B DNA MER2_type -713 152 2 227 294 50 22 chrX 10898502 10898646 -166075494 + L1MDa LINE L1 1943 2094 -4446 1999 123 7 10 chrX 10899398 10899699 -166074441 + AluSx SINE Alu 1 300 -12 210 195 0 0 chrX 10899798 10899839 -166074301 - MIR SINE MIR -54 208 168 351 277 42 8 chrX 10899842 10899961 -166074179 + MER94 DNA DNA 1 123 -11 513 245 53 33 chrX 10899972 10900123 -166074017 - MIR SINE MIR -92 170 17 2014 154 3 0 chrX 10900247 10900545 -166073595 + AluJb SINE Alu 1 299 -13 1075 204 51 19 chrX 10900769 10900985 -166073155 - MER58A DNA MER1_type -1 223 1 563 303 31 31 chrX 10900998 10901252 -166072888 + L2 LINE L2 3060 3313 0 387 0 0 0 chrX 10901596 10901639 -166072501 + (TG)n Simple_repeat Simple_repeat 2 44 0 2110 138 0 0 chrX 10901913 10902210 -166071930 + AluJb SINE Alu 1 297 -15 21 36 0 0 chrX 10902753 10902781 -166071359 + AT_rich Low_complexity Low_complexity 1 28 0 463 292 8 0 chrX 10903393 10903513 -166070627 + L2 LINE L2 3145 3265 -7 2260 102 3 0 chrX 10903756 10904049 -166070091 - AluSx SINE Alu -18 294 1 321 368 19 0 chrX 10904361 10904516 -166069624 - MIR SINE MIR -4 258 101 2372 99 0 3 chrX 10904848 10905150 -166068990 - AluSx SINE Alu -11 301 1 1898 140 0 29 chrX 10905240 10905547 -166068593 - AluJo SINE Alu -14 298 1 1025 138 31 41 chrX 10906915 10907110 -166067030 - L1PB4 LINE L1 -13 6143 5951 1583 90 82 23 chrX 10907172 10907338 -166066802 - L1PB4 LINE L1 -188 5968 5780 324 0 0 0 chrX 10907338 10907374 -166066766 + (TG)n Simple_repeat Simple_repeat 2 37 0 1583 90 82 23 chrX 10907374 10907463 -166066677 - L1PB4 LINE L1 -376 5780 5698 279 288 220 0 chrX 10907955 10908132 -166066008 - L2 LINE L2 -1331 1983 1768 226 333 67 7 chrX 10909284 10909434 -166064706 + L2 LINE L2 2478 2636 -678 1189 219 5 0 chrX 10909443 10909658 -166064482 + MER58A DNA MER1_type 9 224 0 405 0 0 0 chrX 10909739 10909784 -166064356 + (TG)n Simple_repeat Simple_repeat 1 45 0 606 358 23 18 chrX 10909893 10910327 -166063813 + L2 LINE L2 2626 3064 -208 291 263 0 25 chrX 10911241 10911321 -166062819 + GA-rich Low_complexity Low_complexity 4 81 0 990 220 87 25 chrX 10911321 10911598 -166062542 - MLT1H LTR MaLR 0 549 256 1330 59 0 0 chrX 10911823 10911992 -166062148 - L1PA13 LINE L1 -2 6161 5993 1627 158 91 0 chrX 10912507 10912792 -166061348 + AluJb SINE Alu 1 311 -1 258 304 20 20 chrX 10913371 10913473 -166060667 + GA-rich Low_complexity Low_complexity 5 106 0 294 321 100 61 chrX 10913702 10913903 -166060237 + L2 LINE L2 2928 3224 -48 326 213 25 0 chrX 10913903 10913983 -166060157 - MER91A DNA MER1_type -114 82 1 294 321 100 61 chrX 10913983 10914032 -166060108 + L2 LINE L2 3224 3270 -2 21 0 0 0 chrX 10914904 10914925 -166059215 + AT_rich Low_complexity Low_complexity 1 21 0 1870 164 0 7 chrX 10915775 10916068 -166058072 + AluJo SINE Alu 1 291 -21 600 313 78 15 chrX 10916111 10916518 -166057622 - L1ME4a LINE L1 -214 5907 5473 4108 62 14 29 chrX 10916920 10917472 -166056668 - L1PA10 LINE L1 -3 6165 5622 2112 101 0 54 chrX 10918084 10918408 -166055732 + AluSx SINE Alu 1 308 0 2069 142 7 0 chrX 10919264 10919611 -166054529 - AluJo SINE Alu 0 349 1 202 207 35 35 chrX 10919795 10919853 -166054287 - MIR SINE MIR -152 110 53 302 297 17 42 chrX 10920352 10920470 -166053670 + L2 LINE L2 3199 3313 0 1130 135 0 0 chrX 10920542 10920698 -166053442 + AluJb SINE Alu 134 289 -23 597 274 42 9 chrX 10920789 10921001 -166053139 - MIR SINE MIR -42 220 2 2439 80 3 0 chrX 10921195 10921496 -166052644 + AluSq SINE Alu 1 302 -11 2509 251 96 35 chrX 10922104 10922818 -166051322 - L1MEc LINE L1 -2469 3746 3077 1753 148 16 23 chrX 10922818 10923128 -166051012 - AluJb SINE Alu 0 312 5 2509 251 96 35 chrX 10923128 10923868 -166050272 - L1MEc LINE L1 -3138 3077 2228 2180 98 3 54 chrX 10923868 10924185 -166049955 - AluSq SINE Alu -12 301 1 2509 251 96 35 chrX 10924185 10924286 -166049854 - L1MEc LINE L1 -3987 2228 2135 2127 126 3 0 chrX 10924618 10924912 -166049228 - AluSx SINE Alu -16 296 2 667 275 36 52 chrX 10924955 10925206 -166048934 + MER115 DNA AcHobo 2 248 -445 1047 209 80 115 chrX 10925591 10925952 -166048188 + MLT1H1 LTR MaLR 1 336 -219 2135 135 36 30 chrX 10925952 10926314 -166047826 - THE1B LTR MaLR 0 364 1 1047 209 80 115 chrX 10926314 10926527 -166047613 + MLT1H1 LTR MaLR 336 555 0 1221 14 14 0 chrX 10926997 10927137 -166047003 - L1PA4 LINE L1 -192 5963 5822 1502 44 0 6 chrX 10927137 10927314 -166046826 + L1PA4 LINE L1 5974 6155 0 245 253 23 0 chrX 10927327 10927414 -166046726 + L1M4 LINE L1 3685 3773 -2373 186 43 0 0 chrX 10927477 10927500 -166046640 + (A)n Simple_repeat Simple_repeat 1 23 0 190 276 0 17 chrX 10928031 10928089 -166046051 + MIR SINE MIR 184 240 -22 239 214 0 0 chrX 10928098 10928140 -166046000 + AluJ/monomer SINE Alu 2 43 -257 783 208 53 5 chrX 10928142 10928349 -166045791 - L1M4 LINE L1 -798 5348 5132 1751 174 7 20 chrX 10928384 10928678 -166045462 + AluJo SINE Alu 2 291 -21 395 222 25 0 chrX 10928715 10928796 -166045344 - L2 LINE L2 0 3272 3190 288 0 0 0 chrX 10929622 10929654 -166044486 + (TG)n Simple_repeat Simple_repeat 1 32 0 406 326 51 6 chrX 10929844 10930022 -166044118 + MIR SINE MIR 65 250 -12 426 186 0 0 chrX 10931548 10931618 -166042522 - MER45C DNA AcHobo -2 951 882 630 178 0 0 chrX 10931624 10931731 -166042409 + FRAM SINE Alu 40 146 -30 1909 221 98 113 chrX 10931757 10932634 -166041506 - MER45C DNA AcHobo -89 864 1 186 189 0 0 chrX 10933680 10933717 -166040423 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 1106 265 55 11 chrX 10934017 10934364 -166039776 - L1MC4 LINE L1 -522 7520 7159 315 100 0 0 chrX 10934364 10934404 -166039736 + Alu SINE Alu 1 40 -268 920 159 0 37 chrX 10934404 10934567 -166039573 + AluJb SINE Alu 144 300 -12 2688 230 70 110 chrX 10934711 10935977 -166038163 - L1MC4a LINE L1 -902 6906 5692 680 289 16 11 chrX 10936526 10936716 -166037424 + MLT1I LTR MaLR 57 247 -162 3849 179 56 13 chrX 10936716 10937486 -166036654 + L1ME2 LINE L1 5341 6143 -21 542 228 0 2 chrX 10937508 10937653 -166036487 + MLT1I LTR MaLR 235 409 0 320 194 0 117 chrX 10937664 10937715 -166036425 - MER103 DNA DNA -69 97 62 2319 110 7 0 chrX 10937715 10938016 -166036124 + AluSx SINE Alu 1 303 -9 320 194 0 117 chrX 10938016 10938067 -166036073 - MER103 DNA DNA -104 62 7 207 125 0 0 chrX 10938278 10938318 -166035822 + (A)n Simple_repeat Simple_repeat 1 40 0 2131 254 63 12 chrX 10940453 10941091 -166033049 - L1ME3A LINE L1 0 6170 5501 781 280 37 5 chrX 10941133 10941347 -166032793 + MIR SINE MIR 4 224 -38 670 182 20 27 chrX 10941347 10941495 -166032645 + AluJb SINE Alu 1 147 -165 1740 115 8 28 chrX 10941620 10941900 -166032240 + AluSx SINE Alu 35 309 0 425 254 78 28 chrX 10941900 10942117 -166032023 - L1ME3A LINE L1 -1818 4328 4101 1327 155 14 0 chrX 10942118 10942331 -166031809 + AluJo SINE Alu 86 301 -11 1076 261 76 43 chrX 10942347 10942876 -166031264 - L1ME3A LINE L1 -2058 4088 3543 1369 254 57 30 chrX 10943173 10943704 -166030436 + L1PBa LINE L1 6 550 -6313 6215 140 20 14 chrX 10943814 10945440 -166028700 + L1PB1 LINE L1 4514 6150 -1 335 264 37 88 chrX 10945429 10945509 -166028631 + L1ME2 LINE L1 3259 3342 -2804 * 1760 95 0 0 chrX 10945509 10945731 -166028409 + AluSg/x SINE Alu 83 304 -6 335 264 37 88 chrX 10945731 10945945 -166028195 + L1ME2 LINE L1 3342 3538 -2608 1596 161 37 74 chrX 10946074 10946398 -166027742 - AluJo SINE Alu 0 312 1 2426 97 0 0 chrX 10946454 10946763 -166027377 + AluSg SINE Alu 1 309 -1 1505 237 78 58 chrX 10946799 10947517 -166026623 + L1ME2 LINE L1 5204 5951 -211 34 42 0 0 chrX 10947726 10947774 -166026366 + AT_rich Low_complexity Low_complexity 1 48 0 874 268 124 18 chrX 10947779 10948883 -166025257 + HAL1 LINE L1 1173 2474 -33 458 191 18 18 chrX 10948919 10949029 -166025111 + L1ME2 LINE L1 6041 6150 -14 330 231 54 97 chrX 10949080 10949266 -166024874 + L1MC4 LINE L1 7864 8041 -1 294 296 12 0 chrX 10949801 10949882 -166024258 - MIR SINE MIR -55 153 72 1863 157 36 22 chrX 10950111 10950468 -166023672 + L1MB5 LINE L1 5813 6174 0 519 219 22 15 chrX 10950468 10950605 -166023535 + L1MC4 LINE L1 7905 8042 0 493 89 9 107 chrX 10951345 10951457 -166022683 + L1MB2 LINE L1 6069 6169 -2 946 168 47 12 chrX 10952082 10952241 -166021899 + Charlie5 DNA MER1_type 34 186 -2399 2424 79 3 31 chrX 10952241 10952558 -166021582 - AluSx SINE Alu -4 308 1 946 168 47 12 chrX 10952558 10952639 -166021501 + Charlie5 DNA MER1_type 186 2585 0 257 321 38 19 chrX 10954803 10954909 -166019231 + MIR SINE MIR 126 233 -29 673 257 38 79 chrX 10955239 10955438 -166018702 - L1MEd LINE L1 -4721 1589 1383 2232 118 0 9 chrX 10955438 10955753 -166018387 - AluSx SINE Alu 0 312 1 673 257 38 79 chrX 10955753 10956053 -166018087 - L1MEd LINE L1 -4927 1383 1067 2448 84 0 3 chrX 10956215 10956526 -166017614 + AluSx SINE Alu 1 310 -2 2058 125 17 7 chrX 10956550 10956838 -166017302 + AluJb SINE Alu 2 292 -20 285 191 0 63 chrX 10957561 10957624 -166016516 - MER91 DNA MER1_type -13 127 69 767 126 71 0 chrX 10957865 10957992 -166016148 - MSTB LTR MaLR 0 428 293 778 85 138 8 chrX 10957992 10958122 -166016018 - MSTB LTR MaLR -279 147 1 211 226 96 78 chrX 10958758 10958803 -166015337 + MIR3 SINE MIR 65 108 -100 1617 81 41 0 chrX 10958803 10959024 -166015116 + MER30 DNA MER1_type 1 230 0 211 226 96 78 chrX 10959024 10959093 -166015047 + MIR3 SINE MIR 108 181 -27 987 218 115 44 chrX 10959310 10959631 -166014509 - L1ME3A LINE L1 0 6170 5827 288 0 0 0 chrX 10960086 10960118 -166014022 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 383 267 136 21 chrX 10960122 10960313 -166013827 - MIR SINE MIR -4 258 46 278 213 80 0 chrX 10960704 10960779 -166013361 + L2 LINE L2 3233 3313 0 2134 194 129 70 chrX 10960886 10961666 -166012474 - LTR1B LTR ERV1 0 826 1 232 50 0 0 chrX 10961691 10961731 -166012409 + Alu SINE Alu 263 302 -1 662 146 127 0 chrX 10961771 10961881 -166012259 + FAM SINE Alu 46 169 -16 5194 147 42 13 chrX 10962443 10963732 -166010408 - L1MB4 LINE L1 0 6180 4852 2508 62 113 0 chrX 10963732 10964068 -166010072 - MER51B LTR ERV1 -3 374 1 5194 147 42 13 chrX 10964068 10964100 -166010040 - L1MB4 LINE L1 -1328 4852 4822 1871 149 0 26 chrX 10964332 10964640 -166009500 + AluJb SINE Alu 11 310 -2 216 200 0 18 chrX 10964779 10964834 -166009306 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 2303 91 17 3 chrX 10964938 10965236 -166008904 + AluSx SINE Alu 1 302 -10 236 174 87 0 chrX 10965663 10965709 -166008431 + MER5A DNA MER1_type 1 50 -139 210 176 0 0 chrX 10965747 10965798 -166008342 + T-rich Low_complexity Low_complexity 1 51 0 1840 145 34 3 chrX 10965800 10966097 -166008043 - AluJb SINE Alu -6 306 1 929 262 20 12 chrX 10966107 10966359 -166007781 - MIR SINE MIR -3 259 6 909 295 99 18 chrX 10966835 10967228 -166006912 + LTR16C LTR ERVL 1 425 -66 417 253 86 19 chrX 10967479 10967641 -166006499 - MIR SINE MIR -17 245 73 182 222 0 0 chrX 10969744 10969780 -166004360 + MIR SINE MIR 223 258 -4 633 218 47 29 chrX 10970178 10970237 -166003903 - MER5B DNA MER1_type -4 174 118 2316 117 3 0 chrX 10970237 10970545 -166003595 + AluSx SINE Alu 1 309 -3 633 218 47 29 chrX 10970545 10970655 -166003485 - MER5B DNA MER1_type -60 118 2 2257 94 0 0 chrX 10970927 10971235 -166002905 - AluSx SINE Alu 0 308 1 262 274 42 0 chrX 10971634 10971724 -166002416 - MIR SINE MIR -62 146 56 212 271 259 0 chrX 10971741 10971826 -166002314 - MIR SINE MIR -143 119 13 1007 152 0 18 chrX 10971877 10972048 -166002092 - FAM SINE Alu -7 168 1 1903 110 20 14 chrX 10972739 10973031 -166001109 + AluSg SINE Alu 1 294 -16 405 119 32 82 chrX 10973723 10973841 -166000299 - MLT1J2 LTR MaLR 0 450 286 1949 147 0 26 chrX 10973994 10974300 -165999840 + AluJo SINE Alu 1 298 -14 2403 77 0 0 chrX 10974894 10975179 -165998961 + AluSc SINE Alu 1 285 -24 405 297 8 16 chrX 10975594 10975743 -165998397 + MER5A DNA MER1_type 7 143 -35 22 35 0 0 chrX 10975890 10975919 -165998221 + AT_rich Low_complexity Low_complexity 1 29 0 1758 84 0 5 chrX 10976048 10976262 -165997878 + AluSx SINE Alu 1 213 -99 991 113 0 0 chrX 10976263 10976422 -165997718 + AluSg/x SINE Alu 157 315 0 2366 101 99 3 chrX 10977718 10978063 -165996077 + MER83B LTR ERV1 1 378 0 251 135 58 0 chrX 10978541 10978593 -165995547 + L2 LINE L2 3258 3312 -1 2053 120 13 28 chrX 10978936 10979253 -165994887 - AluSx SINE Alu 0 312 1 494 248 163 15 chrX 10979674 10979876 -165994264 - MIR SINE MIR 0 262 31 430 248 183 7 chrX 10980941 10981094 -165993046 + MER5A DNA MER1_type 9 188 -1 1808 194 118 37 chrX 10982600 10982808 -165991332 + MLT1F1 LTR MaLR 1 191 -376 369 0 0 0 chrX 10982808 10982849 -165991291 + (CAT)n Simple_repeat Simple_repeat 3 43 0 1808 194 118 37 chrX 10982849 10983161 -165990979 + MLT1F1 LTR MaLR 191 567 0 267 228 18 0 chrX 10983194 10983251 -165990889 - L2 LINE L2 -2 3311 3254 2020 134 0 0 chrX 10983621 10983934 -165990206 + AluJb SINE Alu 1 313 0 221 351 47 27 chrX 10984188 10984336 -165989804 + L2 LINE L2 2831 2981 -291 201 213 21 0 chrX 10984961 10985008 -165989132 + (TA)n Simple_repeat Simple_repeat 2 49 0 2051 145 34 8 chrX 10985756 10986107 -165988033 - MLT1A1 LTR MaLR 0 365 6 219 182 0 0 chrX 10986125 10986169 -165987971 + L2 LINE L2 3229 3272 0 2335 100 0 0 chrX 10986887 10987178 -165986962 + AluSq SINE Alu 1 291 -22 559 192 0 0 chrX 10987178 10987282 -165986858 - MER96B DNA MER1_type? -313 104 1 241 212 341 12 chrX 10987300 10987385 -165986755 - L2 LINE L2 -22 3250 3138 924 258 24 16 chrX 10987503 10987755 -165986385 + MIR SINE MIR 5 258 -4 744 115 0 0 chrX 10988529 10988642 -165985498 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 1633 121 0 28 chrX 10989635 10989884 -165984256 + AluSg/x SINE Alu 66 307 -5 533 190 68 68 chrX 10990030 10990193 -165983947 + MLT1J LTR MaLR 346 508 -3 443 312 125 30 chrX 10990471 10990942 -165983198 - L2 LINE L2 -831 2483 1968 2000 248 38 4 chrX 10990965 10991437 -165982703 + LTR16C LTR ERVL 4 491 0 2406 57 0 23 chrX 10991872 10992173 -165981967 + AluY SINE Alu 1 294 -17 330 232 112 48 chrX 10992381 10992506 -165981634 - L1ME4a LINE L1 -1 6120 5988 941 160 0 0 chrX 10992625 10992775 -165981365 - AluSg/x SINE Alu -6 306 157 652 271 51 20 chrX 10992784 10993076 -165981064 - L1ME4a LINE L1 -286 5835 5535 241 296 59 0 chrX 10993489 10993624 -165980516 - L1ME4a LINE L1 -3802 2344 2202 1855 148 3 7 chrX 10993648 10993938 -165980202 - AluSx SINE Alu -23 289 1 2511 93 0 0 chrX 10994056 10994369 -165979771 - AluSq SINE Alu 0 313 1 25 51 0 0 chrX 10994464 10994503 -165979637 + AT_rich Low_complexity Low_complexity 1 39 0 2101 143 0 3 chrX 10994841 10995149 -165978991 - AluJo SINE Alu -5 307 1 418 214 192 11 chrX 10995516 10995698 -165978442 + MIR SINE MIR 48 262 0 693 187 216 0 chrX 10995915 10996086 -165978054 + MER3 DNA MER1_type 1 208 -1 247 138 0 108 chrX 10996097 10996162 -165977978 + HsTC2 DNA Tc2 1826 1883 -15 408 323 66 0 chrX 10996211 10996378 -165977762 - Tigger8 DNA MER2_type -171 495 318 615 201 34 126 chrX 10996505 10996768 -165977372 + MER112 DNA MER1_type 1 239 -21 223 195 26 39 chrX 10996773 10996850 -165977290 - L2 LINE L2 -3093 221 146 1956 169 66 6 chrX 10996875 10997225 -165976915 - MLT1B LTR MaLR -3 387 17 537 289 19 38 chrX 10999175 10999386 -165974754 - L1ME LINE L1 -394 5727 5521 238 294 86 49 chrX 10999446 10999609 -165974531 + MIR SINE MIR 24 192 -70 2244 127 33 30 chrX 11001084 11001446 -165972694 + THE1B LTR MaLR 1 363 -1 1366 250 77 23 chrX 11001473 11001865 -165972275 - LTR16C LTR ERVL 0 491 79 391 200 11 67 chrX 11003131 11003221 -165970919 - MIR SINE MIR -171 91 7 185 0 0 39 chrX 11003381 11003407 -165970733 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2321 122 0 0 chrX 11003411 11003723 -165970417 - AluSx SINE Alu 0 312 1 1942 107 11 0 chrX 11005280 11005543 -165968597 - AluSq SINE Alu -47 266 1 225 0 0 0 chrX 11005589 11005614 -165968526 + (TTTCC)n Simple_repeat Simple_repeat 1 25 0 2057 126 3 0 chrX 11006143 11006428 -165967712 - AluSx SINE Alu -26 286 1 1634 153 7 54 chrX 11006624 11006918 -165967222 + AluJo SINE Alu 3 282 -30 2464 67 0 10 chrX 11006938 11007250 -165966890 - AluY SINE Alu -2 309 1 1210 174 17 13 chrX 11007450 11007680 -165966460 + MER58B DNA MER1_type 111 341 0 361 178 168 19 chrX 11008712 11008819 -165965321 + L2 LINE L2 3190 3312 -1 319 305 0 25 chrX 11008815 11008933 -165965207 + MIR3 SINE MIR 87 201 -7 * 1863 153 10 16 chrX 11009106 11009414 -165964726 - AluJo SINE Alu -6 306 1 247 263 0 53 chrX 11009565 11009641 -165964499 + MIR3 SINE MIR 108 179 -29 297 209 220 11 chrX 11009986 11010077 -165964063 - MIR SINE MIR -112 150 41 1195 142 35 52 chrX 11010756 11010935 -165963205 + MLT1J2 LTR MaLR 1 177 -273 2287 109 0 13 chrX 11010935 11011238 -165962902 + AluSx SINE Alu 1 299 -13 1195 142 35 52 chrX 11011238 11011290 -165962850 + MLT1J2 LTR MaLR 177 228 -222 1090 133 51 41 chrX 11011379 11011574 -165962566 + MER3 DNA MER1_type 13 209 0 453 213 71 71 chrX 11011417 11011614 -165962526 - MER3 DNA MER1_type 0 209 13 * 1903 241 32 27 chrX 11011621 11011682 -165962458 - MLT2F LTR ERVL 0 663 604 393 22 0 0 chrX 11011682 11011728 -165962412 + (CA)n Simple_repeat Simple_repeat 1 46 0 1903 241 32 27 chrX 11011728 11012280 -165961860 - MLT2F LTR ERVL -59 604 1 285 268 45 18 chrX 11012425 11012537 -165961603 + L1ME4a LINE L1 6006 6120 -1 2379 128 11 19 chrX 11012885 11013252 -165960888 + THE1B LTR MaLR 1 364 0 601 208 17 67 chrX 11013320 11013498 -165960642 - MIR SINE MIR -92 170 2 952 157 0 61 chrX 11013810 11013974 -165960166 + L1MB3 LINE L1 5980 6132 -51 2260 104 0 17 chrX 11013974 11014273 -165959867 + AluSx SINE Alu 1 294 -18 952 157 0 61 chrX 11014273 11014305 -165959835 + L1MB3 LINE L1 6132 6164 -19 251 200 26 9 chrX 11014307 11014422 -165959718 + (TA)n Simple_repeat Simple_repeat 1 117 0 224 252 55 20 chrX 11014757 11014888 -165959252 + MIR SINE MIR 4 186 -76 1538 246 170 21 chrX 11014996 11015513 -165958627 - MLT1G1 LTR MaLR 0 595 2 1433 136 0 49 chrX 11015595 11015903 -165958237 + AluY SINE Alu 1 293 -18 332 201 117 145 chrX 11016135 11016259 -165957881 + MER5B DNA MER1_type 1 120 -58 731 179 0 0 chrX 11016259 11016382 -165957758 - FLAM_A SINE Alu -10 123 1 332 201 117 145 chrX 11016382 11016436 -165957704 + MER5B DNA MER1_type 120 174 -4 762 251 136 23 chrX 11016590 11016944 -165957196 + LTR16C LTR ERVL 96 489 -2 1405 80 144 0 chrX 11017247 11017448 -165956692 + MER30 DNA MER1_type 1 230 0 357 191 0 15 chrX 11017455 11017523 -165956617 + MER106B DNA MER1_type 1 67 -992 186 71 0 0 chrX 11017530 11017558 -165956582 + (A)n Simple_repeat Simple_repeat 1 28 0 393 167 0 13 chrX 11017573 11017651 -165956489 - MER96 DNA MER1_type? 0 175 99 814 257 66 7 chrX 11017705 11017977 -165956163 - L2 LINE L2 -196 3117 2830 653 192 171 5 chrX 11018485 11018678 -165955462 + MIR SINE MIR 33 257 -5 393 192 20 139 chrX 11019613 11019764 -165954376 - LTR16C LTR ERVL -49 442 310 986 224 95 81 chrX 11019959 11020392 -165953748 + LTR33A LTR ERVL 1 439 -84 323 261 0 0 chrX 11020720 11020808 -165953332 - Charlie8 DNA MER1_type -2246 171 84 1396 186 84 11 chrX 11020823 11021108 -165953032 + AluJo SINE Alu 1 306 -6 2334 71 0 0 chrX 11021379 11021660 -165952480 + AluSx SINE Alu 1 281 -31 204 97 0 0 chrX 11021664 11021695 -165952445 + (TAA)n Simple_repeat Simple_repeat 3 33 0 343 301 17 40 chrX 11021750 11021923 -165952217 + MIR SINE MIR 6 174 -88 569 133 7 119 chrX 11021928 11022071 -165952069 - MLT1D LTR MaLR -291 214 88 1600 217 179 50 chrX 11022446 11023000 -165951140 + MLT1E2 LTR MaLR 1 625 -1 2267 113 0 0 chrX 11023983 11024276 -165949864 - AluSx SINE Alu -19 293 1 1887 129 17 27 chrX 11024873 11025168 -165948972 + AluJb SINE Alu 1 292 -20 622 278 70 22 chrX 11025557 11025971 -165948169 + L1ME4a LINE L1 5480 5963 -158 220 234 0 0 chrX 11025972 11026019 -165948121 + (TA)n Simple_repeat Simple_repeat 2 48 0 427 265 96 0 chrX 11026020 11026186 -165947954 + L1ME4a LINE L1 5935 6116 -5 288 285 114 47 chrX 11026534 11026727 -165947413 - L1MA9 LINE L1 -30 6282 6077 287 301 10 10 chrX 11027313 11027416 -165946724 - MIR3 SINE MIR -25 183 81 215 218 36 0 chrX 11027699 11027754 -165946386 - MIR SINE MIR -124 138 82 651 232 85 49 chrX 11027756 11027980 -165946160 + MIR SINE MIR 31 262 0 333 0 0 0 chrX 11030332 11030369 -165943771 + (TG)n Simple_repeat Simple_repeat 2 38 0 1107 261 160 35 chrX 11031276 11031932 -165942208 - L1ME4a LINE L1 0 6121 5384 2518 55 0 0 chrX 11032039 11032331 -165941809 - AluY SINE Alu -17 294 3 265 293 67 27 chrX 11033513 11033663 -165940477 - L2 LINE L2 -34 3279 3124 2042 146 0 0 chrX 11033749 11034043 -165940097 - AluJb SINE Alu -18 294 1 1088 214 42 5 chrX 11034137 11034352 -165939788 + MER58A DNA MER1_type 2 224 0 223 175 0 79 chrX 11035349 11035412 -165938728 + L2 LINE L2 3171 3228 -85 1869 142 33 20 chrX 11035912 11036215 -165937925 - AluSx SINE Alu -5 307 1 978 118 0 15 chrX 11036215 11036351 -165937789 - AluSg SINE Alu -176 134 1 1245 106 0 0 chrX 11036354 11036515 -165937625 + AluSg/x SINE Alu 140 300 -10 321 339 0 0 chrX 11037552 11037661 -165936479 - MIR SINE MIR 0 262 154 2082 122 0 11 chrX 11037662 11037982 -165936158 - AluSp SINE Alu 0 317 1 2314 103 7 0 chrX 11038047 11038347 -165935793 - AluSq SINE Alu -11 302 1 1235 265 49 32 chrX 11038403 11038811 -165935329 + LTR33 LTR ERVL 101 515 -6 2276 132 42 20 chrX 11038951 11039307 -165934833 - THE1B LTR MaLR 0 364 1 2065 152 0 0 chrX 11039811 11040120 -165934020 + AluSx SINE Alu 1 309 -3 2015 146 7 3 chrX 11040668 11040963 -165933177 - AluJo SINE Alu -16 296 1 1197 230 59 64 chrX 11041305 11041710 -165932430 - MLT1J LTR MaLR -8 503 101 203 204 41 0 chrX 11041991 11042040 -165932100 + GA-rich Low_complexity Low_complexity 1 51 0 293 296 61 68 chrX 11042223 11042238 -165931902 + L2 LINE L2 3141 3155 -117 1252 163 0 41 chrX 11042238 11042484 -165931656 + MER106A DNA MER1_type 1 236 0 293 296 61 68 chrX 11042484 11042600 -165931540 + L2 LINE L2 3155 3271 -1 2396 97 0 0 chrX 11042863 11043171 -165930969 + AluSc SINE Alu 1 308 -1 3265 150 25 12 chrX 11043633 11043677 -165930463 - L1MB7 LINE L1 -357 5827 5785 1832 165 7 20 chrX 11043677 11043980 -165930160 - AluJb SINE Alu -13 299 1 3265 150 25 12 chrX 11043980 11044651 -165929489 - L1MB7 LINE L1 -399 5785 5106 43883 31 22 1 chrX 11044656 11050684 -165923456 - L1PA2 LINE L1 0 6155 1 4801 211 93 62 chrX 11050655 11051689 -165922451 - L1M4 LINE L1 -1002 5144 4144 * 1443 106 0 38 chrX 11051689 11051926 -165922214 + AluSg/x SINE Alu 81 308 -4 4801 211 93 62 chrX 11051926 11052165 -165921975 - L1M4 LINE L1 -2002 4144 3914 2130 123 7 0 chrX 11052165 11052473 -165921667 - AluSx SINE Alu -2 310 1 4801 211 93 62 chrX 11052473 11053087 -165921053 - L1M4 LINE L1 -2232 3914 3124 1095 238 33 26 chrX 11053302 11053575 -165920565 + MLT1J1 LTR MaLR 7 281 -165 2097 105 3 3 chrX 11053799 11054095 -165920045 + AluSx SINE Alu 1 296 -16 405 211 9 18 chrX 11054101 11054210 -165919930 + L1MC4 LINE L1 2006 6983 -1339 308 278 52 10 chrX 11054128 11054225 -165919915 - L1MC3 LINE L1 -1139 6646 6546 * 392 286 80 0 chrX 11054241 11054353 -165919787 + L2 LINE L2 3152 3272 0 185 93 53 40 chrX 11054464 11054539 -165919601 + (TA)n Simple_repeat Simple_repeat 1 76 0 31 68 0 0 chrX 11054539 11054598 -165919542 + AT_rich Low_complexity Low_complexity 1 59 0 1966 120 7 7 chrX 11054687 11054986 -165919154 + AluSx SINE Alu 1 299 -13 385 211 0 44 chrX 11055030 11055120 -165919020 - MER20 DNA MER1_type -133 86 1 2332 81 0 0 chrX 11055420 11055716 -165918424 - AluSp SINE Alu -17 296 1 1619 54 0 10 chrX 11056258 11056462 -165917678 + L1PA5 LINE L1 5949 6150 -4 514 273 149 7 chrX 11056591 11056745 -165917395 - MER5A DNA MER1_type 0 189 14 511 145 3 3 chrX 11057070 11057175 -165916965 - L1MB7 LINE L1 -357 5827 5723 1589 162 0 72 chrX 11057188 11057509 -165916631 - AluJb SINE Alu -14 298 1 222 249 0 33 chrX 11057510 11057582 -165916558 - MER5A DNA MER1_type -115 74 4 415 237 68 25 chrX 11057584 11057702 -165916438 - MIR SINE MIR -54 208 86 726 211 72 6 chrX 11057751 11057917 -165916223 + MER5B DNA MER1_type 2 178 0 247 253 0 0 chrX 11057917 11057975 -165916165 - MIR3 SINE MIR -48 160 102 201 39 0 0 chrX 11057986 11058012 -165916128 + (A)n Simple_repeat Simple_repeat 1 26 0 371 224 145 0 chrX 11058484 11058560 -165915580 - L2 LINE L2 -2 3311 3225 760 276 113 69 chrX 11058610 11058963 -165915177 + MLT1K LTR MaLR 132 468 -120 180 0 0 0 chrX 11058963 11058983 -165915157 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 1599 154 4 0 chrX 11058991 11059238 -165914902 - AluJo SINE Alu -64 248 1 760 276 113 69 chrX 11059238 11059307 -165914833 + MLT1K LTR MaLR 474 582 -6 421 288 7 36 chrX 11059314 11059367 -165914773 - MIR3 SINE MIR -2 206 153 1019 188 16 0 chrX 11059367 11059553 -165914587 + MER5A DNA MER1_type 1 189 0 421 288 7 36 chrX 11059553 11059638 -165914502 - MIR3 SINE MIR -55 153 72 569 231 43 129 chrX 11060547 11060654 -165913486 - L2 LINE L2 0 3313 3198 2203 104 10 0 chrX 11060654 11060963 -165913177 + AluSx SINE Alu 1 312 0 569 231 43 129 chrX 11060963 11061158 -165912982 - L2 LINE L2 -115 3198 3037 2086 134 0 6 chrX 11061261 11061575 -165912565 + AluJb SINE Alu 1 312 0 467 250 50 20 chrX 11061630 11061805 -165912335 + MLT1J1 LTR MaLR 66 236 -173 280 247 62 0 chrX 11061860 11061941 -165912199 + MLT1I LTR MaLR 324 409 0 547 214 221 0 chrX 11062242 11062382 -165911758 + MER5A DNA MER1_type 10 180 -9 2054 149 51 9 chrX 11062415 11062765 -165911375 - MLT1A1 LTR MaLR 0 365 1 933 153 5 104 chrX 11062860 11062921 -165911219 + MER5A DNA MER1_type 8 73 -116 2194 97 3 3 chrX 11062921 11063230 -165910910 + AluSx SINE Alu 1 309 -3 933 153 5 104 chrX 11063230 11063370 -165910770 + MER5A DNA MER1_type 73 189 0 232 135 0 0 chrX 11063380 11063417 -165910723 + MLT1L LTR MaLR 158 194 -421 306 223 45 55 chrX 11063422 11063523 -165910617 + MLT1K LTR MaLR 147 246 -342 264 278 31 0 chrX 11063720 11063817 -165910323 + MLT1L LTR MaLR 509 608 -7 2073 126 7 0 chrX 11064046 11064464 -165909676 + AluSx SINE Alu 1 420 0 1752 189 142 3 chrX 11064517 11064714 -165909426 + L1MD3 LINE L1 6820 6988 -1007 180 77 0 0 chrX 11064714 11064740 -165909400 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1752 189 142 3 chrX 11064740 11064929 -165909211 + L1MD3 LINE L1 6988 7260 -735 245 295 105 11 chrX 11065747 11065804 -165908336 + L2 LINE L2 3169 3219 -53 1190 245 39 48 chrX 11065804 11066137 -165908003 + MLT1I LTR MaLR 1 332 -77 1814 118 41 0 chrX 11066137 11066442 -165907698 + AluSx SINE Alu 1 316 0 1190 245 39 48 chrX 11066442 11066519 -165907621 + MLT1I LTR MaLR 332 408 -1 245 295 105 11 chrX 11066519 11066556 -165907584 + L2 LINE L2 3219 3272 0 280 328 82 45 chrX 11066838 11066972 -165907168 - MIR3 SINE MIR -67 141 3 551 206 128 67 chrX 11066986 11067166 -165906974 + MIR SINE MIR 17 207 -55 2114 114 3 10 chrX 11067220 11067527 -165906613 - AluJb SINE Alu -7 305 1 1030 175 0 0 chrX 11068233 11068399 -165905741 - FRAM SINE Alu 0 166 1 575 221 46 0 chrX 11068402 11068533 -165905607 + L1MC/D LINE L1 5584 5720 -2322 850 161 0 54 chrX 11068537 11068686 -165905454 - AluJo SINE Alu -138 174 34 268 152 0 0 chrX 11068797 11068843 -165905297 - L1ME3A LINE L1 -3 6167 6122 1699 236 47 9 chrX 11068908 11069352 -165904788 - L1ME3A LINE L1 -187 5983 5523 273 221 53 84 chrX 11070010 11070105 -165904035 + MIR3 SINE MIR 114 205 -3 363 241 15 30 chrX 11070592 11070725 -165903415 + C-rich Low_complexity Low_complexity 5 135 0 33 56 0 0 chrX 11070766 11070820 -165903320 + GC_rich Low_complexity Low_complexity 1 54 0 515 156 31 0 chrX 11072150 11072246 -165901894 - MER5A DNA MER1_type -79 110 12 3151 140 47 45 chrX 11072404 11072998 -165901142 - LTR49 LTR ERV1 0 595 1 598 94 198 0 chrX 11073091 11073187 -165900953 + MER45A DNA AcHobo 63 177 -1 239 309 75 11 chrX 11074731 11074825 -165899315 + L2 LINE L2 2588 2687 -627 1924 133 13 0 chrX 11074870 11075171 -165898969 - AluSx SINE Alu -5 307 3 1703 160 3 17 chrX 11075173 11075473 -165898667 - AluJo SINE Alu -16 296 1 610 97 0 43 chrX 11075478 11075571 -165898569 - AluJo/FRAM SINE Alu -17 295 207 989 127 20 0 chrX 11075571 11075721 -165898419 - AluSx SINE Alu -154 158 6 689 260 56 52 chrX 11075899 11076168 -165897972 + L2 LINE L2 3044 3313 0 1119 205 87 0 chrX 11076357 11076586 -165897554 - MIR SINE MIR 0 262 14 1299 142 4 36 chrX 11076659 11076884 -165897256 + MER20 DNA MER1_type 2 219 0 329 236 22 34 chrX 11076892 11076981 -165897159 + MER5B DNA MER1_type 1 88 -90 * 344 345 8 25 chrX 11076968 11077087 -165897053 + L2 LINE L2 1221 1337 -1977 2159 101 0 16 chrX 11077297 11077614 -165896526 - AluSx SINE Alu 0 312 1 2230 245 70 66 chrX 11077620 11078024 -165896116 - L1MC4 LINE L1 -1 8041 7640 189 0 0 0 chrX 11078024 11078045 -165896095 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1949 91 0 0 chrX 11078048 11078300 -165895840 - AluSx SINE Alu -55 257 6 2230 245 70 66 chrX 11078300 11078414 -165895726 - L1MC4 LINE L1 -403 7639 7527 2189 91 0 34 chrX 11078414 11078734 -165895406 - AluSc SINE Alu 0 309 1 2230 245 70 66 chrX 11078734 11079028 -165895112 - L1MC4 LINE L1 -515 7527 7236 1738 145 3 7 chrX 11079028 11079310 -165894830 + AluJo SINE Alu 1 281 -31 216 0 0 0 chrX 11079313 11079337 -165894803 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2230 245 70 66 chrX 11079337 11079566 -165894574 - L1MC4 LINE L1 -807 7235 6985 1295 278 238 17 chrX 11079587 11080512 -165893628 + L2 LINE L2 1606 2734 -580 2092 127 0 9 chrX 11080684 11080999 -165893141 - AluSx SINE Alu 0 312 1 317 239 0 102 chrX 11081224 11081312 -165892828 + L2 LINE L2 3192 3270 -2 602 150 0 0 chrX 11082335 11082435 -165891705 - FLAM_A SINE Alu 0 142 43 1405 256 109 10 chrX 11082499 11083020 -165891120 - L1ME3A LINE L1 -3 6167 5600 471 152 63 0 chrX 11083136 11083215 -165890925 - AluJ/FLAM SINE Alu -228 84 1 2170 70 22 38 chrX 11083266 11083581 -165890559 - AluY SINE Alu -1 310 1 186 71 0 0 chrX 11083746 11083774 -165890366 + (A)n Simple_repeat Simple_repeat 1 28 0 365 242 191 38 chrX 11084125 11084282 -165889858 - MER5A DNA MER1_type 0 189 9 2263 81 0 3 chrX 11084467 11084763 -165889377 - AluSx SINE Alu -17 295 1 237 33 0 0 chrX 11084885 11084915 -165889225 + (CA)n Simple_repeat Simple_repeat 2 31 0 594 206 122 69 chrX 11085097 11085286 -165888854 + LTR16C LTR ERVL 112 310 -181 427 263 166 49 chrX 11135288 11135478 -165838662 + LTR1 LTR ERV1 88 425 -546 * 1510 193 57 126 chrX 11135462 11136155 -165837985 + LTR1B LTR ERV1 314 1020 0 2287 145 72 35 chrX 11136156 11136645 -165837495 + MER4-int LTR ERV1 5863 6369 -229 2837 192 42 128 chrX 11136769 11137637 -165836503 - MER21A LTR ERV1 -9 922 130 437 165 126 39 chrX 11137651 11137778 -165836362 - MER21A LTR ERV1 -767 164 27 203 381 29 0 chrX 11138699 11138804 -165835336 - MIR SINE MIR -85 123 16 384 222 178 22 chrX 11140463 11140598 -165833542 - MER5A DNA MER1_type 0 189 34 4311 147 102 9 chrX 11141132 11141360 -165832780 - Tigger3b DNA MER2_type -2140 888 683 2227 99 27 0 chrX 11141360 11141653 -165832487 - AluSg SINE Alu -9 301 1 4311 147 102 9 chrX 11141653 11142236 -165831904 - Tigger3b DNA MER2_type -2345 683 1 953 308 33 13 chrX 11142245 11142635 -165831505 + HAL1 LINE L1 85 482 -2025 262 300 181 6 chrX 11142795 11142955 -165831185 + HAL1 LINE L1 765 952 -1555 740 142 0 0 chrX 11143016 11143122 -165831018 + AluSq/x SINE Alu 2 107 -206 2019 139 16 0 chrX 11143643 11143946 -165830194 - AluJb SINE Alu -4 308 1 1034 123 77 82 chrX 11143984 11144204 -165829936 - MER20 DNA MER1_type 0 219 1 2081 134 0 3 chrX 11144756 11145055 -165829085 + AluSx SINE Alu 1 298 -14 478 238 95 8 chrX 11145331 11145457 -165828683 + MIR SINE MIR 62 198 -64 2190 89 13 36 chrX 11146083 11146385 -165827755 + AluSq SINE Alu 1 295 -18 263 108 0 0 chrX 11148303 11148340 -165825800 + L1PA13 LINE L1 1538 1574 -5213 216 0 0 0 chrX 11148340 11148364 -165825776 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 575 281 175 16 chrX 11148407 11148710 -165825430 + L3 LINE CR1 944 1294 -283 1194 233 113 43 chrX 11148865 11149308 -165824832 + MLT1K LTR MaLR 1 474 -2 226 249 139 74 chrX 11149582 11150025 -165824115 + L2 LINE L2 2614 3083 -189 2388 98 0 13 chrX 11151765 11152080 -165822060 - AluSx SINE Alu -1 311 1 270 311 23 35 chrX 11152518 11152775 -165821365 - L2 LINE L2 -613 2701 2448 277 0 0 0 chrX 11153489 11153525 -165820615 + L1MB3 LINE L1 6148 6183 0 3634 194 57 53 chrX 11153740 11154705 -165819435 - LTR5 LTR ERVK 0 969 1 180 125 47 16 chrX 11154759 11154823 -165819317 + (TTAA)n Simple_repeat Simple_repeat 1 66 0 1992 122 21 0 chrX 11155424 11155737 -165818403 - AluSx SINE Alu 0 319 1 2363 75 0 13 chrX 11155857 11156163 -165817977 - AluSc SINE Alu -7 302 1 312 79 0 0 chrX 11156340 11156378 -165817762 + tRNA-Asp-GAC tRNA tRNA 1 38 -37 2203 82 18 0 chrX 11156415 11156715 -165817425 - AluSx SINE Alu 0 305 1 1468 294 51 44 chrX 11156764 11157777 -165816363 + L1ME3 LINE L1 2230 3249 -2897 1695 119 107 16 chrX 11157819 11158129 -165816011 - MER44D DNA MER2_type 0 609 2 2462 97 0 0 chrX 11158320 11158630 -165815510 + AluSx SINE Alu 1 310 -2 2790 192 101 205 chrX 11158630 11159079 -165815061 - L2 LINE L2 -534 2780 2286 2545 105 11 35 chrX 11159079 11159452 -165814688 - THE1B LTR MaLR 0 364 1 2790 192 101 205 chrX 11159452 11159741 -165814399 - L2 LINE L2 -1028 2286 1969 1672 202 38 17 chrX 11159741 11160087 -165814053 + MLT1A2 LTR MaLR 20 372 -2 2790 192 101 205 chrX 11160087 11160910 -165813230 - L2 LINE L2 -1345 1969 1071 2033 276 153 35 chrX 11160931 11161290 -165812850 + L1ME3 LINE L1 3589 3904 -2242 2364 65 7 14 chrX 11161290 11161581 -165812559 + AluSx SINE Alu 1 289 -23 2033 276 153 35 chrX 11161581 11162683 -165811457 + L1ME3 LINE L1 3904 5223 -923 1286 166 5 27 chrX 11162687 11162910 -165811230 + MLT1F1 LTR MaLR 342 559 -8 675 282 65 72 chrX 11163258 11163412 -165810728 + L1ME3 LINE L1 5383 5537 -625 1271 260 84 10 chrX 11163412 11163827 -165810313 - MLT1J1 LTR MaLR 0 446 1 675 282 65 72 chrX 11163827 11164177 -165809963 + L1ME3 LINE L1 5537 5826 -336 1178 103 72 10 chrX 11164177 11164349 -165809791 + L1MA8 LINE L1 6082 6269 -22 1826 160 10 0 chrX 11164349 11164637 -165809503 - AluJb SINE Alu -21 291 1 1178 103 72 10 chrX 11164637 11164658 -165809482 + L1MA8 LINE L1 6269 6287 -4 675 282 65 72 chrX 11164658 11164711 -165809429 + L1ME3 LINE L1 5826 5878 -284 5314 178 63 51 chrX 11164836 11165462 -165808678 + Charlie1a DNA MER1_type 4 654 -2107 2228 81 20 14 chrX 11165462 11165758 -165808382 - AluSq SINE Alu -14 299 2 5314 178 63 51 chrX 11165758 11166347 -165807793 + Charlie1a DNA MER1_type 654 1234 -221 987 110 0 7 chrX 11166348 11166484 -165807656 - AluJo SINE Alu -177 135 1 1032 146 118 5 chrX 11166503 11166715 -165807425 + Charlie1a DNA MER1_type 1220 1455 0 330 310 7 28 chrX 11167021 11167166 -165806974 + L2 LINE L2 2524 2665 -649 1137 128 0 0 chrX 11167330 11167486 -165806654 + AluSp SINE Alu 138 293 -20 239 321 24 0 chrX 11168158 11168242 -165805898 - MIR SINE MIR -59 149 64 29 47 0 0 chrX 11168378 11168421 -165805719 + AT_rich Low_complexity Low_complexity 1 43 0 750 214 141 5 chrX 11168471 11168663 -165805477 - MER2 DNA MER2_type 0 345 128 238 228 35 18 chrX 11168663 11168720 -165805420 + Tigger5 DNA MER2_type 2261 2318 -5 290 175 238 0 chrX 11168722 11168785 -165805355 - Tigger5 DNA MER2_type -2245 78 1 * 782 160 20 53 chrX 11168785 11168923 -165805217 - MER2 DNA MER2_type -211 134 2 341 260 122 8 chrX 11169591 11169714 -165804426 - MIR3 SINE MIR -6 202 66 2292 109 0 3 chrX 11169770 11170081 -165804059 + AluSx SINE Alu 1 310 -2 1602 186 3 23 chrX 11170139 11170440 -165803700 - AluJb SINE Alu -16 296 2 3955 96 4 6 chrX 11171027 11171539 -165802601 - MER9 LTR ERVK 0 511 1 2001 136 0 0 chrX 11171540 11171826 -165802314 - AluJb SINE Alu -26 286 1 2448 84 0 0 chrX 11172378 11172676 -165801464 - AluSx SINE Alu -14 298 1 2302 107 10 0 chrX 11173044 11173353 -165800787 - AluSx SINE Alu 0 312 1 209 294 59 0 chrX 11173548 11173616 -165800524 - MIR SINE MIR -103 105 34 2311 104 0 0 chrX 11173632 11173930 -165800210 + AluSc SINE Alu 1 298 -11 2269 109 0 3 chrX 11175089 11175400 -165798740 - AluSx SINE Alu -2 310 1 295 261 115 46 chrX 11175596 11175726 -165798414 - L2 LINE L2 -2 3311 3173 2276 102 0 0 chrX 11175736 11176029 -165798111 - AluSx SINE Alu -19 293 1 2458 75 0 0 chrX 11176039 11176334 -165797806 - AluSc SINE Alu -14 295 1 526 276 16 45 chrX 11176334 11176600 -165797540 - L1MC4a LINE L1 -176 5945 5683 * 3120 131 23 23 chrX 11176592 11177117 -165797023 + L1MA9 LINE L1 5266 5790 -522 22 0 0 0 chrX 11177125 11177147 -165796993 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chrX 11177161 11177211 -165796929 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1767 144 8 0 chrX 11177215 11177478 -165796662 + MER2 DNA MER2_type 7 271 -74 2192 119 3 0 chrX 11177493 11177788 -165796352 + AluJb SINE Alu 1 296 -16 1311 126 70 0 chrX 11177825 11178040 -165796100 + L1MA9 LINE L1 5782 6011 -301 403 99 10 168 chrX 11178039 11178140 -165796000 + L1MA9 LINE L1 6228 6312 0 * 306 0 0 0 chrX 11178146 11178180 -165795960 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chrX 11178317 11178347 -165795793 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chrX 11178403 11178425 -165795715 + (CA)n Simple_repeat Simple_repeat 1 22 0 8745 220 47 54 chrX 11178437 11179117 -165795023 - L1MB7 LINE L1 -9 6411 5727 2337 95 0 3 chrX 11179117 11179422 -165794718 - AluSq SINE Alu -9 304 1 8745 220 47 54 chrX 11179422 11179657 -165794483 - L1MB7 LINE L1 -693 5727 5492 261 0 0 0 chrX 11179657 11179686 -165794454 + (TA)n Simple_repeat Simple_repeat 2 30 0 1949 131 38 0 chrX 11179686 11179976 -165794164 - AluJb SINE Alu -11 301 1 8745 220 47 54 chrX 11179976 11180826 -165793314 - L1MB7 LINE L1 -927 5493 4638 1588 152 109 7 chrX 11180826 11181109 -165793031 - AluJo SINE Alu 0 312 1 8745 220 47 54 chrX 11181109 11181168 -165792972 - L1MB7 LINE L1 -1782 4638 4580 2435 83 0 0 chrX 11181168 11181468 -165792672 + AluSg SINE Alu 1 300 -10 8745 220 47 54 chrX 11181468 11181902 -165792238 - L1MB7 LINE L1 -1840 4580 4144 6375 114 8 11 chrX 11181902 11183197 -165790943 - L1PA16 LINE L1 -3 6163 4872 8745 220 47 54 chrX 11183197 11183960 -165790180 - L1MB7 LINE L1 -2276 4144 3377 1337 103 0 0 chrX 11183960 11184134 -165790006 - AluSp SINE Alu -3 310 137 8745 220 47 54 chrX 11184134 11185138 -165789002 - L1MB7 LINE L1 -3043 3377 2339 333 0 0 0 chrX 11185138 11185175 -165788965 + (TG)n Simple_repeat Simple_repeat 2 38 0 227 296 80 77 chrX 11185257 11185418 -165788722 - L1M4 LINE L1 -1152 4994 4830 2331 89 0 3 chrX 11185418 11185709 -165788431 - AluSc SINE Alu -19 290 1 227 296 80 77 chrX 11185709 11185858 -165788282 - L1M4 LINE L1 -1316 4830 4683 225 154 0 0 chrX 11185930 11185969 -165788171 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 2253 119 0 0 chrX 11186440 11186734 -165787406 - AluSg SINE Alu -12 298 5 984 225 171 23 chrX 11187068 11187454 -165786686 + L1MEd LINE L1 561 1003 -5116 2167 110 0 36 chrX 11187470 11187779 -165786361 + AluSq SINE Alu 1 298 -15 419 271 76 48 chrX 11187779 11188092 -165786048 + L1MEd LINE L1 1085 1399 -4730 1537 244 100 37 chrX 11188143 11188458 -165785682 + L1MEd LINE L1 2267 2561 -3568 2415 78 0 0 chrX 11188458 11188754 -165785386 - AluY SINE Alu -15 296 1 1537 244 100 37 chrX 11188754 11189011 -165785129 + L1MEd LINE L1 2561 2895 -3234 2524 63 0 0 chrX 11189011 11189314 -165784826 + AluY SINE Alu 1 303 -8 1537 244 100 37 chrX 11189314 11189450 -165784690 + L1MEd LINE L1 2895 3021 -3108 1949 133 0 14 chrX 11189476 11189781 -165784359 - AluSx SINE Alu 0 301 1 414 0 0 0 chrX 11189828 11189874 -165784266 + (GA)n Simple_repeat Simple_repeat 1 46 0 237 241 19 142 chrX 11189889 11190051 -165784089 - LTR41 LTR ERVL -132 641 500 596 267 13 83 chrX 11190251 11190477 -165783663 - LTR41 LTR ERVL -547 248 5 1438 282 58 13 chrX 11190514 11190579 -165783561 + L1M4 LINE L1 4373 4434 -1712 1644 62 0 0 chrX 11190579 11190772 -165783368 - AluY SINE Alu -13 298 106 1438 282 58 13 chrX 11190772 11191255 -165782885 + L1M4 LINE L1 4434 4946 -1200 255 235 0 104 chrX 11191328 11191412 -165782728 + L1ME4a LINE L1 6017 6089 -32 2079 109 0 11 chrX 11191412 11191727 -165782413 + AluSx SINE Alu 1 312 0 255 235 0 104 chrX 11191727 11191756 -165782384 + L1ME4a LINE L1 6089 6119 -2 2259 96 0 0 chrX 11192229 11192521 -165781619 + AluSg SINE Alu 1 292 -18 2172 128 0 0 chrX 11192735 11193033 -165781107 - AluSx SINE Alu -14 298 1 584 277 80 28 chrX 11193388 11193601 -165780539 + MIR SINE MIR 2 225 -37 561 125 0 23 chrX 11194053 11194141 -165779999 + LTR54 LTR ERV1 1 86 -424 2513 68 10 0 chrX 11194487 11194795 -165779345 - AluSp SINE Alu -2 311 1 1558 184 77 21 chrX 11196223 11196626 -165777514 + LTR54 LTR ERV1 1 480 -30 551 295 44 18 chrX 11196628 11196836 -165777304 + MER57-int LTR ERV1 1913 2100 -4231 1060 195 55 61 chrX 11196882 11197233 -165776907 + MSTD LTR MaLR 1 396 0 329 188 58 0 chrX 11197483 11197552 -165776588 + MER57-int LTR ERV1 467 539 -6998 356 177 0 101 chrX 11197850 11197929 -165776211 + MER57-int LTR ERV1 755 825 -4046 2280 112 3 0 chrX 11197935 11198239 -165775901 + AluSq SINE Alu 1 305 -8 2393 88 7 0 chrX 11198312 11198619 -165775521 - AluSg SINE Alu -1 309 1 270 175 48 0 chrX 11198700 11198763 -165775377 + LTR57-int LTR ERVL 449 514 -4829 288 0 0 0 chrX 11198963 11198995 -165775145 + (A)n Simple_repeat Simple_repeat 1 32 0 2179 131 0 0 chrX 11199150 11199447 -165774693 - AluSq SINE Alu -16 297 1 2343 51 6 41 chrX 11199489 11199805 -165774335 + AluY SINE Alu 1 305 -6 258 269 0 0 chrX 11200266 11200318 -165773822 + MER57-int LTR ERV1 3363 3414 -4123 737 188 125 12 chrX 11200333 11200493 -165773647 + MER34C LTR ERV1 160 337 -248 2251 77 0 20 chrX 11200493 11200793 -165773347 - AluY SINE Alu -17 294 1 484 138 41 152 chrX 11200794 11200939 -165773201 + MER57-int LTR ERV1 1994 3552 -3985 766 259 126 40 chrX 11201088 11201795 -165772345 + LTR1 LTR ERV1 28 1009 -11 487 214 115 73 chrX 11201902 11202094 -165772046 + MER57-int LTR ERV1 2294 2493 -2378 2245 88 20 0 chrX 11202178 11202472 -165771668 + AluSg SINE Alu 1 300 -10 635 183 39 130 chrX 11202709 11203064 -165771076 + MER57-int LTR ERV1 1718 2040 -6080 679 250 24 38 chrX 11203069 11203126 -165771014 + MER57-int LTR ERV1 2344 2400 -2723 2135 109 0 0 chrX 11203126 11203420 -165770720 + AluSx SINE Alu 1 294 -18 679 250 24 38 chrX 11203420 11203574 -165770566 + MER57-int LTR ERV1 2400 2552 -2571 848 211 0 0 chrX 11203949 11204110 -165770030 - FRAM SINE Alu -14 162 2 387 255 121 34 chrX 11204513 11204662 -165769478 + MER5B DNA MER1_type 17 178 0 251 291 22 25 chrX 11204678 11204809 -165769331 - MER5B DNA MER1_type -2 176 56 2180 111 0 0 chrX 11205077 11205375 -165768765 - AluSg SINE Alu -12 298 1 2324 80 3 0 chrX 11205798 11206099 -165768041 - AluSq SINE Alu -11 302 1 22 0 0 0 chrX 11206500 11206522 -165767618 + AT_rich Low_complexity Low_complexity 1 22 0 2304 100 0 0 chrX 11206833 11207142 -165766998 - AluSx SINE Alu -3 309 1 2138 113 7 0 chrX 11207563 11207865 -165766275 - AluSq SINE Alu -9 304 1 1534 162 38 17 chrX 11207866 11207954 -165766186 + MER57-int LTR ERV1 3060 3145 -1791 1966 86 4 0 chrX 11207954 11208211 -165765929 + AluSx SINE Alu 42 299 -13 1534 162 38 17 chrX 11208211 11208450 -165765690 + MER57-int LTR ERV1 3145 3812 -1124 2284 71 7 3 chrX 11208545 11208841 -165765299 - AluSx SINE Alu -15 297 1 2538 226 49 19 chrX 11208852 11209583 -165764557 + MER57-int LTR ERV1 3411 4230 -641 2376 211 28 8 chrX 11209593 11210063 -165764077 + MER57-int LTR ERV1 6665 7143 -394 1894 142 71 136 chrX 11210066 11210312 -165763828 + LTR54 LTR ERV1 1 195 -315 2006 88 36 26 chrX 11210312 11210617 -165763523 + AluSq SINE Alu 1 308 -5 1894 142 71 136 chrX 11210617 11210907 -165763233 + LTR54 LTR ERV1 195 502 -8 1956 232 186 14 chrX 11211005 11211570 -165762570 + MLT2F LTR ERVL 2 663 0 501 277 0 15 chrX 11211573 11211710 -165762430 + ERVL-F LTR ERVL 4 138 -5626 886 265 31 5 chrX 11211908 11212131 -165762009 + ERVL-F LTR ERVL 386 614 -5150 4755 42 3 45 chrX 11212133 11212400 -165761740 - LTR10C LTR ERV1 -1 590 313 2135 104 0 3 chrX 11212400 11212699 -165761441 - AluY SINE Alu -13 298 1 4755 42 3 45 chrX 11212699 11213047 -165761093 - LTR10C LTR ERV1 -278 313 1 433 273 0 50 chrX 11213095 11213234 -165760906 + ERVL-F LTR ERVL 763 894 -4870 656 304 91 45 chrX 11213292 11213690 -165760450 + L1MEc LINE L1 1847 2262 -4134 383 243 133 110 chrX 11213756 11213929 -165760211 + MLT1H LTR MaLR 296 472 -77 1892 134 9 22 chrX 11213933 11214283 -165759857 - MER4A LTR ERV1 0 664 261 381 139 241 0 chrX 11214283 11214362 -165759778 - MER4A LTR ERV1 -566 98 1 2059 104 6 22 chrX 11214384 11214559 -165759581 - AluSp SINE Alu 0 313 144 5721 127 18 16 chrX 11214559 11215487 -165758653 - LTR5 LTR ERVK 0 969 40 2059 104 6 22 chrX 11215487 11215628 -165758512 - AluSp SINE Alu -169 144 2 225 273 45 55 chrX 11215708 11215771 -165758369 + MLT1H-int LTR MaLR 16 79 -1292 5509 58 1 0 chrX 11215771 11216430 -165757710 - PABL_A LTR ERV1 0 660 1 225 273 45 55 chrX 11216430 11216476 -165757664 + MLT1H-int LTR MaLR 79 124 -1247 378 293 34 27 chrX 11216570 11216717 -165757423 + MLT1H-int LTR MaLR 397 544 -827 2705 228 130 29 chrX 11216840 11217811 -165756329 + L1MEc LINE L1 37 908 -5307 2312 83 3 0 chrX 11217811 11218111 -165756029 + AluSp SINE Alu 1 301 -12 2705 228 130 29 chrX 11218111 11218619 -165755521 + L1MEc LINE L1 908 4929 -1286 2376 144 25 74 chrX 11218635 11218803 -165755337 - L1MC3 LINE L1 -7 7778 7603 1931 86 0 122 chrX 11218803 11219130 -165755010 - AluSq SINE Alu -16 287 1 2376 144 25 74 chrX 11219130 11219155 -165754985 - L1MC3 LINE L1 -182 7603 7578 2111 133 0 51 chrX 11219155 11219509 -165754631 + MER1B DNA MER1_type 2 337 0 2376 144 25 74 chrX 11219509 11219800 -165754340 - L1MC3 LINE L1 -207 7578 7317 272 170 0 0 chrX 11219867 11219914 -165754226 - L1MC3 LINE L1 -475 7310 7264 469 284 85 0 chrX 11220049 11220190 -165753950 - MIR SINE MIR -22 240 88 2045 209 17 41 chrX 11220746 11221192 -165752948 - L1MB8 LINE L1 -6 6172 5740 2005 95 0 11 chrX 11221192 11221466 -165752674 - AluSx SINE Alu -41 271 1 2045 209 17 41 chrX 11221466 11221554 -165752586 - L1MB8 LINE L1 -438 5740 5651 2073 130 0 0 chrX 11221918 11222226 -165751914 - AluSq SINE Alu -5 308 1 442 259 32 50 chrX 11222228 11222506 -165751634 - L1MB8 LINE L1 -814 5332 5060 3257 183 79 5 chrX 11222507 11223115 -165751025 - MER82 DNA MER2_type 0 653 1 912 272 54 48 chrX 11223203 11223377 -165750763 - L1MB8 LINE L1 -1228 4918 4747 1937 144 0 3 chrX 11223377 11223669 -165750471 - AluJb SINE Alu -18 294 4 912 272 54 48 chrX 11223669 11223935 -165750205 - L1MB8 LINE L1 -1399 4747 4475 498 321 53 42 chrX 11224144 11224499 -165749641 - L1MEd LINE L1 -5327 792 434 668 247 21 21 chrX 11224680 11224866 -165749274 - L1MEd LINE L1 -5920 199 14 850 141 0 0 chrX 11225077 11225198 -165748942 - FLAM_A SINE Alu -12 121 1 198 0 0 0 chrX 11225205 11225227 -165748913 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1926 128 17 7 chrX 11225349 11225647 -165748493 - AluSx SINE Alu -11 301 1 302 18 73 0 chrX 11225782 11225837 -165748303 + (TA)n Simple_repeat Simple_repeat 2 60 0 2297 58 0 10 chrX 11225837 11226130 -165748010 - AluY SINE Alu -21 290 1 1483 236 99 22 chrX 11226242 11226657 -165747483 - L1ME3A LINE L1 -39 6131 5685 442 283 135 60 chrX 11226653 11226842 -165747298 - L1ME1 LINE L1 -336 5830 5657 * 2505 95 52 3 chrX 11226842 11227189 -165746951 - THE1B LTR MaLR 0 364 1 442 283 135 60 chrX 11227189 11227264 -165746876 - L1ME1 LINE L1 -509 5657 5589 180 0 0 0 chrX 11227264 11227284 -165746856 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 442 283 135 60 chrX 11227284 11227552 -165746588 - L1ME1 LINE L1 -577 5589 5260 2193 106 3 0 chrX 11227565 11227867 -165746273 + AluSg SINE Alu 1 303 -7 1845 156 7 7 chrX 11227945 11228253 -165745887 + MER49 LTR ERV1 5 312 -611 591 89 13 0 chrX 11228254 11228333 -165745807 + AluSp SINE Alu 2 81 -231 2408 53 7 0 chrX 11228334 11228636 -165745504 - AluY SINE Alu -7 304 1 1741 65 4 9 chrX 11228636 11228865 -165745275 + AluSp SINE Alu 67 294 -19 935 152 33 65 chrX 11228866 11229050 -165745090 + MER49 LTR ERV1 301 478 -445 680 120 93 42 chrX 11229037 11229227 -165744913 + MER49 LTR ERV1 587 890 -33 * 2047 127 0 16 chrX 11229230 11229585 -165744555 + AluSx SINE Alu 3 352 0 320 241 0 0 chrX 11229782 11229861 -165744279 - LTR58 LTR ERV1 -230 449 371 3889 143 23 62 chrX 11230193 11230773 -165743367 + MER50 LTR ERV1 1 602 -132 1784 157 4 0 chrX 11230773 11231080 -165743060 - AluSx SINE Alu 0 308 1 3889 143 23 62 chrX 11231080 11231091 -165743049 + MER50 LTR ERV1 602 612 -122 2649 13 0 0 chrX 11231091 11231391 -165742749 - AluY SINE Alu -11 300 1 3889 143 23 62 chrX 11231391 11231537 -165742603 + MER50 LTR ERV1 612 711 -23 275 318 31 75 chrX 11231545 11231607 -165742533 - L1MDa LINE L1 -1905 4635 4572 1085 169 0 0 chrX 11231607 11231796 -165742344 + MER53 DNA DNA 1 189 0 275 318 31 75 chrX 11231796 11231868 -165742272 - L1MDa LINE L1 -1968 4572 4498 366 226 132 31 chrX 11231868 11231915 -165742225 - MER5B DNA MER1_type -3 175 134 221 0 35 0 chrX 11231915 11231944 -165742196 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 366 226 132 31 chrX 11231944 11232055 -165742085 - MER5B DNA MER1_type -44 134 1 275 318 31 75 chrX 11232055 11232240 -165741900 - L1MDa LINE L1 -2042 4498 4329 1724 108 69 86 chrX 11232271 11232451 -165741689 + LTR23 LTR ERV1 1 182 -255 1842 143 7 3 chrX 11232451 11232751 -165741389 - AluJb SINE Alu -11 301 1 1724 108 69 86 chrX 11232751 11232870 -165741270 + LTR23 LTR ERV1 182 296 -141 2321 45 7 16 chrX 11232870 11233178 -165740962 + AluY SINE Alu 1 305 -6 1724 108 69 86 chrX 11233178 11233237 -165740903 + LTR23 LTR ERV1 296 354 -83 947 123 20 113 chrX 11233238 11233441 -165740699 + MER4E LTR ERV1 1 184 -595 2205 72 3 7 chrX 11233522 11233834 -165740306 + AluY SINE Alu 1 311 0 3771 136 19 28 chrX 11234815 11235432 -165738708 + MER4E LTR ERV1 168 779 0 411 159 29 0 chrX 11235432 11235495 -165738645 + LTR23 LTR ERV1 352 416 -21 926 128 0 8 chrX 11235497 11235630 -165738510 + FLAM_C SINE Alu 2 133 0 296 263 47 96 chrX 11235727 11235950 -165738190 - L1MDa LINE L1 -2358 4182 3966 506 198 30 0 chrX 11235950 11236051 -165738089 + MER5A DNA MER1_type 9 112 -77 204 187 286 22 chrX 11235985 11236076 -165738064 - MER5A DNA MER1_type -32 157 43 * 1611 290 117 59 chrX 11236234 11236446 -165737694 - L1MDa LINE L1 -2697 3843 3645 2093 90 3 60 chrX 11236446 11236778 -165737362 - AluSp SINE Alu 0 313 1 1611 290 117 59 chrX 11236778 11236885 -165737255 - L1MDa LINE L1 -2895 3645 3546 1892 51 0 4 chrX 11236885 11237121 -165737019 - AluY SINE Alu -76 235 1 1611 290 117 59 chrX 11237121 11237300 -165736840 - L1MDa LINE L1 -2994 3546 3379 2255 88 3 0 chrX 11237300 11237606 -165736534 - AluY SINE Alu -4 307 1 1611 290 117 59 chrX 11237606 11237945 -165736195 - L1MDa LINE L1 -3161 3379 3061 2118 111 0 0 chrX 11237945 11238242 -165735898 + AluSx SINE Alu 1 297 -15 1611 290 117 59 chrX 11238242 11238801 -165735339 - L1MDa LINE L1 -3479 3061 2351 2183 124 0 0 chrX 11238906 11239212 -165734928 - AluSx SINE Alu -6 306 1 2559 92 6 3 chrX 11239292 11239629 -165734511 + THE1B LTR MaLR 27 364 0 620 229 126 17 chrX 11240734 11240909 -165733231 - MIR SINE MIR -44 218 25 500 252 8 0 chrX 11242157 11242288 -165731852 + MER53 DNA DNA 23 154 -35 1338 121 5 5 chrX 11242288 11242487 -165731653 - AluSg/x SINE Alu -20 292 94 313 133 0 0 chrX 11242489 11242534 -165731606 - Alu SINE Alu -254 45 1 295 145 0 81 chrX 11242533 11242557 -165731583 - MER53 DNA DNA -132 57 33 * 2280 94 0 7 chrX 11242557 11242866 -165731274 - AluSx SINE Alu -5 307 1 295 145 0 81 chrX 11242866 11242903 -165731237 - MER53 DNA DNA -156 33 1 205 343 151 17 chrX 11242905 11243077 -165731063 + MIR SINE MIR 25 219 -43 591 303 71 17 chrX 11243092 11243498 -165730642 + LTR16A1 LTR ERVL 1 428 -29 239 85 17 51 chrX 11244088 11244147 -165729993 + (TTCCC)n Simple_repeat Simple_repeat 1 57 0 1859 124 4 4 chrX 11244151 11244426 -165729714 - AluSx SINE Alu -37 275 1 289 302 47 39 chrX 11244426 11244555 -165729585 + MIR SINE MIR 61 190 -72 324 128 0 0 chrX 11244751 11244798 -165729342 - FLAM SINE Alu -1 132 86 1297 182 0 0 chrX 11244798 11245018 -165729122 - AluJo SINE Alu -92 220 1 791 157 90 30 chrX 11245698 11245853 -165728287 - L1MA9 LINE L1 -327 5985 5818 2156 93 0 3 chrX 11245853 11246142 -165727998 - AluSx SINE Alu -13 299 12 810 146 0 0 chrX 11246302 11246432 -165727708 - AluJb SINE Alu -45 267 138 531 330 98 12 chrX 11246442 11246769 -165727371 + L2 LINE L2 2952 3306 -7 399 264 24 24 chrX 11246776 11246901 -165727239 - MIR SINE MIR -131 131 7 1790 151 0 26 chrX 11247637 11247948 -165726192 - AluJb SINE Alu -9 303 1 663 354 26 18 chrX 11247954 11248446 -165725694 - L1M4 LINE L1 -3399 2747 2252 2211 101 0 0 chrX 11248743 11249041 -165725099 - AluSx SINE Alu -14 298 1 2120 89 0 3 chrX 11249198 11249490 -165724650 + AluSg SINE Alu 1 291 -19 193 71 0 48 chrX 11249490 11249532 -165724608 + (TA)n Simple_repeat Simple_repeat 2 41 0 227 67 0 107 chrX 11249634 11249783 -165724357 + (TA)n Simple_repeat Simple_repeat 1 133 0 346 56 11 101 chrX 11249796 11249974 -165724166 + (TA)n Simple_repeat Simple_repeat 2 163 0 422 183 0 0 chrX 11250032 11250103 -165724037 + AluJ/FLAM SINE Alu 2 72 -240 632 239 80 42 chrX 11250297 11250561 -165723579 + MLT1L LTR MaLR 3 276 -339 242 224 0 45 chrX 11250575 11250642 -165723498 + GA-rich Low_complexity Low_complexity 1 64 0 909 265 87 10 chrX 11250646 11250944 -165723196 + MLT1L LTR MaLR 287 607 -8 1572 149 3 65 chrX 11250999 11251307 -165722833 - AluJo SINE Alu -23 289 1 346 263 35 26 chrX 11251708 11251822 -165722318 - MIR SINE MIR -7 255 141 295 175 113 38 chrX 11252475 11252555 -165721585 - MIR SINE MIR -109 153 68 427 346 48 24 chrX 11252716 11252924 -165721216 - MIR SINE MIR -25 237 25 300 230 58 24 chrX 11253453 11253577 -165720563 + MIR SINE MIR 36 164 -66 244 331 58 19 chrX 11254697 11254851 -165719289 + L2 LINE L2 2903 3062 -251 569 288 197 25 chrX 11256666 11256755 -165717385 + LTR67 LTR ERVL 33 105 -452 1785 170 28 0 chrX 11256755 11257044 -165717096 - AluJb SINE Alu -15 297 1 569 288 197 25 chrX 11257044 11257395 -165716745 + LTR67 LTR ERVL 105 549 -8 237 224 26 53 chrX 11258852 11258928 -165715212 - MIR SINE MIR -122 140 67 825 200 42 47 chrX 11264916 11265131 -165709009 + MER20 DNA MER1_type 3 216 -3 201 214 0 39 chrX 11265670 11265736 -165708404 + MIR SINE MIR 11 73 -135 403 209 174 0 chrX 11268858 11268973 -165705167 - MER112 DNA MER1_type -8 252 118 180 0 0 0 chrX 11269077 11269097 -165705043 + (T)n Simple_repeat Simple_repeat 1 20 0 2377 92 0 0 chrX 11269916 11270210 -165703930 - AluSg SINE Alu -16 294 1 1975 138 21 3 chrX 11270213 11270502 -165703638 - AluJb SINE Alu -14 298 5 2450 88 3 0 chrX 11270549 11270856 -165703284 + AluSp SINE Alu 1 308 -5 933 120 0 47 chrX 11270865 11271015 -165703125 + FLAM_C SINE Alu 1 143 0 254 248 109 20 chrX 11271211 11271312 -165702828 - L1ME4a LINE L1 -208 5913 5804 2296 79 0 14 chrX 11273252 11273544 -165700596 - AluSg SINE Alu -22 288 1 1752 190 40 3 chrX 11276513 11276865 -165697275 + MLT1A1 LTR MaLR 1 365 0 300 301 0 12 chrX 11277228 11277311 -165696829 + L1ME3A LINE L1 5908 5989 -181 667 318 47 50 chrX 11277396 11277911 -165696229 + MER34 LTR ERV1 1 513 -29 21 0 0 0 chrX 11278179 11278200 -165695940 + AT_rich Low_complexity Low_complexity 1 21 0 2093 123 20 10 chrX 11278267 11278559 -165695581 + AluJb SINE Alu 1 295 -17 2306 97 0 13 chrX 11279080 11279242 -165694898 - AluSx SINE Alu -17 295 137 2327 110 3 0 chrX 11279242 11279542 -165694598 - AluSp SINE Alu -12 301 1 2306 97 0 13 chrX 11279542 11279678 -165694462 - AluSx SINE Alu -175 137 1 433 296 131 28 chrX 11279875 11280051 -165694089 - MIR3 SINE MIR -7 201 8 1605 134 58 0 chrX 11280293 11280554 -165693586 - Tigger3(Golem) DNA MER2_type -1 3028 2753 1095 133 0 61 chrX 11280554 11280735 -165693405 + AluJo SINE Alu 1 170 -142 1872 152 55 0 chrX 11281318 11281440 -165692700 + AluJo SINE Alu 1 115 -197 237 65 0 0 chrX 11281440 11281471 -165692669 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1872 152 55 0 chrX 11281471 11281638 -165692502 + AluJo SINE Alu 115 306 -6 1397 247 101 54 chrX 11281757 11282774 -165691366 - L2 LINE L2 0 3313 2247 2183 100 3 7 chrX 11282995 11283294 -165690846 + AluSx SINE Alu 2 299 -13 305 51 0 0 chrX 11283744 11283783 -165690357 - MADE1 DNA Mariner -41 39 1 1368 183 79 12 chrX 11284409 11284737 -165689403 + L1MB7 LINE L1 5835 6184 0 2449 71 14 0 chrX 11284939 11285235 -165688905 + AluSp SINE Alu 1 300 -13 2122 119 3 7 chrX 11285954 11286257 -165687883 - AluSx SINE Alu -10 302 1 1165 92 0 7 chrX 11286689 11286842 -165687298 + AluJb SINE Alu 84 235 -77 468 286 0 8 chrX 11287290 11287423 -165686717 - MER94 DNA DNA 0 134 3 23 0 0 0 chrX 11287640 11287663 -165686477 + AT_rich Low_complexity Low_complexity 1 23 0 2523 83 0 0 chrX 11288028 11288340 -165685800 - AluSp SINE Alu -1 312 1 432 222 0 0 chrX 11288598 11288688 -165685452 + L1ME LINE L1 5689 5778 -343 786 244 48 18 chrX 11288695 11288924 -165685216 + MIR SINE MIR 3 238 -24 842 83 30 0 chrX 11288961 11289093 -165685047 + L1MB2 LINE L1 5995 6130 -41 2429 91 0 0 chrX 11289093 11289390 -165684750 + AluSx SINE Alu 1 297 -15 2566 56 0 0 chrX 11289412 11289715 -165684425 + AluY SINE Alu 1 303 -8 386 211 0 0 chrX 11290639 11290710 -165683430 - tRNA-Val-GTG tRNA tRNA -3 73 3 28 0 0 0 chrX 11290972 11291000 -165683140 + GC_rich Low_complexity Low_complexity 1 28 0 554 188 45 0 chrX 11291395 11291507 -165682633 - MER45A DNA AcHobo -5 173 57 386 290 99 0 chrX 11291884 11292015 -165682125 + MIR3 SINE MIR 43 186 -22 2309 96 7 7 chrX 11292765 11293068 -165681072 - AluSx SINE Alu -9 303 1 963 256 188 10 chrX 11293070 11293464 -165680676 + L2 LINE L2 1013 1476 -1838 696 137 144 52 chrX 11293476 11293629 -165680511 - MER20 DNA MER1_type -31 188 22 408 226 32 0 chrX 11293639 11293732 -165680408 + MER20 DNA MER1_type 43 138 -81 878 140 13 25 chrX 11293732 11293878 -165680262 + AluJb SINE Alu 157 302 -10 2055 128 0 19 chrX 11293878 11294191 -165679949 + AluJb SINE Alu 1 307 -5 2833 284 98 26 chrX 11294202 11294810 -165679330 + L2 LINE L2 1714 2277 -1036 2003 141 7 14 chrX 11294810 11295107 -165679033 - AluSx SINE Alu -17 295 1 2833 284 98 26 chrX 11295107 11295538 -165678602 + L2 LINE L2 2277 2675 -638 1995 156 7 3 chrX 11295538 11295839 -165678301 + AluSx SINE Alu 1 302 -10 2833 284 98 26 chrX 11295839 11295934 -165678206 + L2 LINE L2 2675 2762 -551 252 0 0 0 chrX 11295934 11295962 -165678178 + (CTG)n Simple_repeat Simple_repeat 2 29 0 2833 284 98 26 chrX 11295962 11296147 -165677993 + L2 LINE L2 2762 3133 -180 2296 92 0 38 chrX 11296150 11296349 -165677791 - AluSc SINE Alu -4 305 121 4394 33 2 0 chrX 11296349 11296889 -165677251 - L1PA4 LINE L1 -3 6152 5612 2296 92 0 38 chrX 11296889 11297006 -165677134 - AluSc SINE Alu -188 121 1 493 210 38 57 chrX 11297021 11297178 -165676962 + L2 LINE L2 3151 3304 -9 255 264 34 95 chrX 11297199 11297347 -165676793 + MLT1K LTR MaLR 223 361 -227 850 284 97 15 chrX 11297386 11297727 -165676413 + MLT1I LTR MaLR 19 387 -22 1328 305 95 9 chrX 11297758 11298223 -165675917 - LTR67 LTR ERVL -51 506 2 354 265 86 0 chrX 11298305 11298422 -165675718 + MLT1K LTR MaLR 454 580 -8 2276 101 25 30 chrX 11298570 11298936 -165675204 - THE1B LTR MaLR 0 364 1 768 231 91 12 chrX 11299138 11299380 -165674760 - MIR SINE MIR 0 262 2 2259 121 0 6 chrX 11300342 11300655 -165673485 - AluSx SINE Alu 0 312 2 2633 58 0 0 chrX 11301134 11301442 -165672698 + AluY SINE Alu 2 309 -2 314 335 35 41 chrX 11302230 11302427 -165671713 - MLT1K LTR MaLR -355 233 38 239 111 167 19 chrX 11302477 11302531 -165671609 - MIR SINE MIR 0 262 201 739 265 57 91 chrX 11302533 11303062 -165671078 - MLT1J LTR MaLR 0 511 1 734 250 12 12 chrX 11303062 11303237 -165670903 - MIR SINE MIR -59 203 29 2441 104 0 0 chrX 11303409 11303718 -165670422 - AluSx SINE Alu -3 309 1 433 274 15 30 chrX 11303718 11303853 -165670287 - MIR SINE MIR -114 148 16 2181 139 74 72 chrX 11304462 11304935 -165669205 - MER4B LTR ERV1 -136 474 1 1729 112 82 63 chrX 11304954 11305257 -165668883 + AluJb SINE Alu 1 309 -3 361 212 62 62 chrX 11305275 11305421 -165668719 - MER5A DNA MER1_type 0 189 44 * 688 225 6 38 chrX 11305293 11305453 -165668687 + MER5A DNA MER1_type 35 189 0 676 195 19 32 chrX 11305787 11305941 -165668199 + L2 LINE L2 3158 3309 -4 2258 92 6 48 chrX 11306088 11306404 -165667736 - AluSx SINE Alu -9 303 1 308 222 162 30 chrX 11307024 11307123 -165667017 + MIR3 SINE MIR 70 181 -27 395 351 50 29 chrX 11307626 11308002 -165666138 + L2 LINE L2 2007 2390 -924 604 242 8 8 chrX 11308061 11308181 -165665959 + L2 LINE L2 3151 3270 -2 481 334 82 23 chrX 11308172 11308477 -165665663 + L2 LINE L2 2408 2730 -584 * 677 249 35 6 chrX 11308568 11308741 -165665399 + MER104 DNA Tc2 1 178 -2 * 714 251 55 55 chrX 11308741 11308988 -165665152 + MER102b DNA MER1_type 95 341 0 278 59 0 0 chrX 11309240 11309274 -165664866 - HSMAR1 DNA Mariner -1253 34 1 2227 110 0 3 chrX 11309289 11309597 -165664543 - AluSq SINE Alu -6 307 1 2616 203 81 39 chrX 11309597 11310198 -165663942 - L1ME1 LINE L1 -56 6110 5477 1574 182 56 0 chrX 11310198 11310467 -165663673 + AluJb SINE Alu 1 284 -28 2616 203 81 39 chrX 11310467 11310535 -165663605 - L1ME1 LINE L1 -689 5477 5413 264 243 28 93 chrX 11310621 11310666 -165663474 - L1ME LINE L1 -5923 147 101 2297 228 58 31 chrX 11310666 11311240 -165662900 - MLT1E LTR MaLR -4 589 1 264 243 28 93 chrX 11311240 11311301 -165662839 - L1ME LINE L1 -5969 101 48 1796 155 10 10 chrX 11311885 11312182 -165661958 - AluJo SINE Alu -15 297 1 298 223 96 25 chrX 11312188 11312345 -165661795 - Charlie7 DNA MER1_type -12 2600 2433 * 313 220 40 40 chrX 11312332 11312432 -165661708 - Charlie7 DNA MER1_type -2511 101 2 459 208 69 8 chrX 11312884 11313014 -165661126 - LTR16C LTR ERVL 0 491 354 276 318 23 16 chrX 11313184 11313313 -165660827 + L2 LINE L2 2961 3090 -182 208 309 0 0 chrX 11313373 11313428 -165660712 - MIR SINE MIR -12 250 196 751 247 128 17 chrX 11313674 11313909 -165660231 + MIR SINE MIR 2 262 0 1984 132 24 0 chrX 11314236 11314524 -165659616 + AluSx SINE Alu 1 295 -17 208 256 0 64 chrX 11314648 11314726 -165659414 - L2 LINE L2 -182 3090 3018 408 20 0 0 chrX 11315970 11316019 -165658121 + (TG)n Simple_repeat Simple_repeat 1 49 0 437 293 99 26 chrX 11316730 11316921 -165657219 + MIR SINE MIR 55 259 -3 284 273 57 0 chrX 11317179 11317267 -165656873 - MIR SINE MIR -72 190 98 529 178 153 17 chrX 11317386 11317504 -165656636 - MER103 DNA DNA -19 147 14 27 29 0 0 chrX 11319023 11319057 -165655083 + AT_rich Low_complexity Low_complexity 1 34 0 254 297 27 0 chrX 11319288 11319362 -165654778 - L2 LINE L2 0 3272 3197 2029 145 0 7 chrX 11319651 11319955 -165654185 - AluJb SINE Alu -10 302 1 599 236 43 7 chrX 11320439 11320579 -165653561 + MER5B DNA MER1_type 5 149 -29 430 224 61 0 chrX 11320565 11320663 -165653477 - MER5B DNA MER1_type -72 106 3 * 214 313 232 0 chrX 11320667 11320766 -165653374 + MIR3 SINE MIR 82 203 -5 202 127 0 73 chrX 11320789 11320844 -165653296 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 585 265 8 96 chrX 11320964 11321161 -165652979 + L3 LINE CR1 518 688 -889 2074 134 0 3 chrX 11321161 11321460 -165652680 + AluJb SINE Alu 1 298 -14 585 265 8 96 chrX 11321460 11321522 -165652618 + L3 LINE CR1 688 754 -823 728 135 8 2 chrX 11321715 11321967 -165652173 + AluJ SINE Alu 1 302 -10 2186 116 0 3 chrX 11322192 11322495 -165651645 + AluSx SINE Alu 1 302 -10 2586 68 0 0 chrX 11322548 11322856 -165651284 - AluSg SINE Alu -2 308 1 4721 162 81 11 chrX 11324827 11325221 -165648919 - L1MB5 LINE L1 -8 6166 5801 2454 78 7 0 chrX 11325221 11325527 -165648613 - AluSx SINE Alu -4 308 1 4721 162 81 11 chrX 11325527 11326196 -165647944 - L1MB5 LINE L1 -373 5801 5028 3311 95 18 31 chrX 11326195 11326710 -165647430 + L1PB4 LINE L1 5282 5789 -367 * 231 152 0 0 chrX 11326729 11326775 -165647365 + L1MC4 LINE L1 6658 6703 -1339 228 216 0 0 chrX 11326778 11326829 -165647311 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2580 99 34 8 chrX 11326830 11327184 -165646956 + L1PB4 LINE L1 5782 6144 -12 7349 188 52 21 chrX 11327201 11327484 -165646656 - L1MB5 LINE L1 -1107 5039 4766 2361 84 3 3 chrX 11327484 11327781 -165646359 - AluSg SINE Alu -13 297 1 7349 188 52 21 chrX 11327781 11329154 -165644986 - L1MB5 LINE L1 -1380 4766 3331 251 231 0 0 chrX 11329179 11329231 -165644909 - MER66A LTR ERV1 -140 338 287 527 248 98 39 chrX 11329392 11329828 -165644312 - L1ME4a LINE L1 -43 6078 5586 397 327 42 65 chrX 11329829 11329992 -165644148 - MIR SINE MIR 0 262 106 2337 97 0 3 chrX 11329992 11330300 -165643840 - AluSg SINE Alu -3 307 1 397 327 42 65 chrX 11330300 11330399 -165643741 - MIR SINE MIR -156 106 6 326 239 150 9 chrX 11330513 11330649 -165643491 - MIR SINE MIR -63 145 36 892 158 38 32 chrX 11330821 11330979 -165643161 + FRAM SINE Alu 1 159 -7 2220 116 0 7 chrX 11330979 11331273 -165642867 + AluSx SINE Alu 1 292 -20 406 228 152 35 chrX 11331376 11331547 -165642593 - MIR SINE MIR -70 192 2 2492 63 0 0 chrX 11331981 11332284 -165641856 + AluY SINE Alu 2 304 -7 186 133 0 0 chrX 11332781 11332811 -165641329 + (T)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chrX 11332817 11332838 -165641302 + AT_rich Low_complexity Low_complexity 1 21 0 229 164 55 0 chrX 11332880 11332935 -165641205 - L1MC4 LINE L1 -6 8036 7979 617 236 31 15 chrX 11332943 11333138 -165641002 - L1MC4 LINE L1 -156 7886 7689 576 296 185 6 chrX 11333138 11333631 -165640509 + L2 LINE L2 1679 2259 -1055 1840 135 3 60 chrX 11334018 11334337 -165639803 + AluJo SINE Alu 1 301 -11 2229 128 0 0 chrX 11335069 11335375 -165638765 - AluJb SINE Alu -6 306 1 1818 198 112 21 chrX 11335480 11335955 -165638185 + L1MC4 LINE L1 7120 7637 -405 180 0 0 0 chrX 11335964 11335984 -165638156 + (GA)n Simple_repeat Simple_repeat 1 20 0 2416 85 0 25 chrX 11336038 11336355 -165637785 + AluSx SINE Alu 1 309 -3 302 368 42 0 chrX 11336486 11336698 -165637442 + L2 LINE L2 651 871 -2443 463 141 0 0 chrX 11336768 11336839 -165637301 - L1PB4 LINE L1 -8 6148 6078 370 336 7 15 chrX 11337252 11337389 -165636751 - MIR3 SINE MIR -14 194 59 1060 192 105 18 chrX 11338341 11338617 -165635523 - L2 LINE L2 -1 3312 3013 2234 94 0 0 chrX 11338717 11339003 -165635137 - AluSx SINE Alu -16 296 11 291 247 62 0 chrX 11339120 11339201 -165634939 - MIR SINE MIR -12 250 165 219 36 0 0 chrX 11339254 11339282 -165634858 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 394 238 127 28 chrX 11339301 11339482 -165634658 - L2 LINE L2 -42 3271 3073 2195 105 0 26 chrX 11339512 11339816 -165634324 - AluSx SINE Alu -16 296 1 500 284 62 82 chrX 11339854 11340097 -165634043 + MIR SINE MIR 5 242 -20 195 162 0 0 chrX 11340339 11340376 -165633764 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 1201 187 189 6 chrX 11340904 11341434 -165632706 - LTR50 LTR ERVL -3 792 3 2082 97 7 0 chrX 11341802 11342124 -165632016 + AluSg SINE Alu 1 324 0 254 260 200 20 chrX 11342197 11342297 -165631843 + MIR SINE MIR 36 153 -109 2154 125 0 10 chrX 11342387 11342690 -165631450 - AluSx SINE Alu -12 300 1 274 275 38 0 chrX 11342719 11342799 -165631341 - MIR3 SINE MIR -17 191 109 374 240 0 72 chrX 11342803 11342928 -165631212 + MIR SINE MIR 6 121 -141 3278 111 75 28 chrX 11343180 11343710 -165630430 - MER21A LTR ERV1 0 931 377 707 130 298 0 chrX 11343716 11343877 -165630263 - MER21A LTR ERV1 -667 264 56 366 42 0 0 chrX 11343885 11343933 -165630207 + (TC)n Simple_repeat Simple_repeat 2 49 0 2467 104 39 31 chrX 11343945 11344302 -165629838 - THE1B LTR MaLR 0 364 5 306 260 27 67 chrX 11344833 11344983 -165629157 - MIR SINE MIR -12 250 107 255 233 44 56 chrX 11345435 11345525 -165628615 - L1ME LINE L1 -482 5688 5600 799 258 0 0 chrX 11345553 11345712 -165628428 - MIR SINE MIR -98 164 6 2327 110 0 0 chrX 11346442 11346743 -165627397 - AluSq SINE Alu -12 301 1 1924 101 24 21 chrX 11347327 11347615 -165626525 - L1MB8 LINE L1 -11 6167 5879 1357 101 0 3 chrX 11347615 11347843 -165626297 - AluSc SINE Alu -11 298 1 2884 120 19 30 chrX 11347845 11348313 -165625827 - L1MB8 LINE L1 -298 5886 5424 2243 116 0 7 chrX 11348650 11348951 -165625189 + AluSq SINE Alu 1 299 -14 1463 239 65 42 chrX 11348979 11349426 -165624714 - LTR16A1 LTR ERVL 0 457 1 30359 55 3 1 chrX 11349860 11355988 -165618152 - L1PA5 LINE L1 -2 6152 11 2166 115 0 3 chrX 11356142 11356437 -165617703 - AluSg SINE Alu -16 294 1 22 0 0 0 chrX 11356524 11356546 -165617594 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrX 11356645 11356667 -165617473 + (T)n Simple_repeat Simple_repeat 1 22 0 282 288 34 55 chrX 11357020 11357166 -165616974 - MER5B DNA MER1_type -9 169 27 1575 189 95 78 chrX 11357223 11357506 -165616634 - L1ME3A LINE L1 -5 6165 5867 1947 128 19 44 chrX 11357506 11357826 -165616314 - AluSx SINE Alu 0 312 1 1575 189 95 78 chrX 11357826 11358056 -165616084 - L1ME3A LINE L1 -303 5867 5643 1078 267 49 72 chrX 11358066 11358305 -165615835 - MLT1H LTR MaLR -7 542 299 2113 125 35 0 chrX 11358305 11358594 -165615546 + AluSx SINE Alu 1 299 -13 1078 267 49 72 chrX 11358594 11358909 -165615231 - MLT1H LTR MaLR -250 299 1 916 246 41 92 chrX 11358911 11359169 -165614971 - L1ME3A LINE L1 -523 5641 5408 2411 94 3 0 chrX 11359169 11359477 -165614663 - AluSx SINE Alu -3 309 1 916 246 41 92 chrX 11359477 11359609 -165614531 - L1ME3A LINE L1 -756 5408 5271 2160 105 3 10 chrX 11359613 11359919 -165614221 - AluSx SINE Alu -8 304 1 247 294 24 8 chrX 11360368 11360494 -165613646 - L1ME3A LINE L1 -1729 4417 4290 649 295 58 0 chrX 11360523 11360713 -165613427 - MIR SINE MIR -11 251 51 37 23 0 0 chrX 11360728 11360772 -165613368 + AT_rich Low_complexity Low_complexity 1 44 0 359 69 75 52 chrX 11360777 11360951 -165613189 + (TA)n Simple_repeat Simple_repeat 1 178 0 1568 138 24 12 chrX 11360951 11361197 -165612943 - AluJb SINE Alu -21 291 43 517 295 122 25 chrX 11361217 11361570 -165612570 - L1ME3A LINE L1 -1871 4275 3889 711 255 162 10 chrX 11362511 11362715 -165611425 + MIR SINE MIR 2 236 -26 1518 104 24 9 chrX 11363206 11363417 -165610723 - AluJb SINE Alu -13 299 86 1539 269 72 35 chrX 11364242 11364754 -165609386 - MLT1H LTR MaLR -16 533 3 199 246 29 58 chrX 11365386 11365455 -165608685 + L2 LINE L2 3239 3305 -8 189 0 0 0 chrX 11365476 11365497 -165608643 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 11267 190 55 34 chrX 11365891 11367226 -165606914 - L1MB7 LINE L1 -16 6666 5360 2260 119 0 0 chrX 11367226 11367529 -165606611 + AluSx SINE Alu 1 303 -9 11267 190 55 34 chrX 11367529 11368092 -165606048 - L1MB7 LINE L1 -1322 5360 4810 264 59 0 0 chrX 11368092 11368126 -165606014 + (TG)n Simple_repeat Simple_repeat 1 34 0 11267 190 55 34 chrX 11368126 11369908 -165604232 - L1MB7 LINE L1 -1872 4810 708 440 268 37 12 chrX 11369915 11370001 -165604139 - L1MB7 LINE L1 -6374 168 86 180 0 0 0 chrX 11370001 11370021 -165604119 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 440 268 37 12 chrX 11370021 11370098 -165604042 - L1MB7 LINE L1 -6456 86 1 1915 161 3 13 chrX 11370319 11370629 -165603511 - AluJb SINE Alu -5 307 1 237 148 0 37 chrX 11370753 11370807 -165603333 + L1MCc LINE L1 1417 1468 -4955 1947 176 21 20 chrX 11370946 11371013 -165603127 - L1MB7 LINE L1 0 6183 6118 2219 93 0 0 chrX 11371013 11371293 -165602847 + AluSx SINE Alu 1 280 -32 1947 176 21 20 chrX 11371293 11371666 -165602474 - L1MB7 LINE L1 -65 6118 5768 2396 89 0 0 chrX 11371916 11372208 -165601932 - AluSx SINE Alu -20 292 1 847 137 0 0 chrX 11372656 11372773 -165601367 + FLAM_C SINE Alu 1 117 -26 730 168 0 0 chrX 11372797 11372910 -165601230 - MER33 DNA MER1_type -211 113 1 252 229 0 49 chrX 11373148 11373209 -165600931 - L2 LINE L2 0 3272 3215 229 283 174 0 chrX 11374633 11374725 -165599415 - MIR3 SINE MIR -1 207 100 25 0 0 0 chrX 11375021 11375046 -165599094 + AT_rich Low_complexity Low_complexity 1 25 0 2264 93 0 3 chrX 11375726 11376015 -165598125 - AluSx SINE Alu -24 288 1 378 290 32 24 chrX 11376183 11376307 -165597833 - L2 LINE L2 -11 3261 3137 1070 161 0 23 chrX 11376330 11376504 -165597636 - AluJb SINE Alu -6 306 137 2231 122 0 3 chrX 11376506 11376809 -165597331 - AluSx SINE Alu -10 302 1 702 249 49 16 chrX 11376837 11377022 -165597118 + MIR SINE MIR 49 239 -23 3251 63 2 0 chrX 11378152 11378545 -165595595 - MER41A LTR ERV1 0 554 161 277 30 0 0 chrX 11378545 11378578 -165595562 + MADE1 DNA Mariner 1 33 -47 5805 52 1 0 chrX 11378608 11379267 -165594873 - PABL_A LTR ERV1 0 660 1 25 0 0 0 chrX 11379423 11379448 -165594692 + AT_rich Low_complexity Low_complexity 1 25 0 688 249 8 51 chrX 11381099 11381336 -165592804 + L1MA9 LINE L1 6061 6287 -25 2350 112 0 3 chrX 11381510 11381824 -165592316 + AluSq SINE Alu 1 313 0 1962 122 7 18 chrX 11382495 11382807 -165591333 + AluSq SINE Alu 1 309 0 2250 102 3 0 chrX 11382994 11383289 -165590851 + AluSg SINE Alu 1 296 -14 539 284 72 88 chrX 11384389 11384639 -165589501 - L2 LINE L2 -5 3267 3022 659 278 50 68 chrX 11386044 11386382 -165587758 - MARNA DNA Mariner -23 563 232 295 295 0 0 chrX 11386568 11386661 -165587479 - L1P LINE L1 -2466 3680 3588 191 279 0 0 chrX 11386700 11386743 -165587397 + MER5A DNA MER1_type 144 186 -3 2387 116 88 66 chrX 11387351 11387561 -165586579 - Tigger2a DNA MER2_type -2276 432 228 1719 127 0 108 chrX 11387561 11387877 -165586263 + AluSx SINE Alu 1 282 -30 2387 116 88 66 chrX 11387877 11388089 -165586051 - Tigger2a DNA MER2_type -2480 228 1 1358 26 0 0 chrX 11388192 11388348 -165585792 - L1P LINE L1 -2456 3690 3535 2891 207 28 8 chrX 11388348 11388884 -165585256 - MLT1F1 LTR MaLR -13 554 8 487 286 118 13 chrX 11388996 11389377 -165584763 - L1MEc LINE L1 -3709 2523 2116 22 0 0 0 chrX 11389728 11389750 -165584390 + AT_rich Low_complexity Low_complexity 1 22 0 2523 78 3 0 chrX 11389808 11390117 -165584023 - AluSp SINE Alu -3 310 1 480 270 70 0 chrX 11390195 11390310 -165583830 + L2 LINE L2 3180 3302 -11 362 326 129 13 chrX 11390389 11390837 -165583303 - HAL1 LINE L1 -854 1653 1154 2342 93 0 22 chrX 11390940 11391253 -165582887 - AluSx SINE Alu -6 306 1 336 24 0 0 chrX 11391938 11391979 -165582161 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 1678 164 3 24 chrX 11391979 11392263 -165581877 - AluJb SINE Alu -30 282 3 2322 97 3 0 chrX 11392367 11392667 -165581473 + AluSp SINE Alu 1 301 -12 492 280 24 15 chrX 11392736 11392904 -165581236 - MIR SINE MIR -42 220 55 1606 78 0 45 chrX 11393232 11393475 -165580665 - AluY SINE Alu 0 311 80 2079 141 3 0 chrX 11393475 11393772 -165580368 - AluSx SINE Alu -12 300 2 271 361 118 41 chrX 11395846 11396212 -165577928 - L2 LINE L2 -68 3204 2811 1084 295 117 52 chrX 11396259 11396501 -165577639 - L2 LINE L2 -584 2730 2505 2447 60 0 7 chrX 11396501 11396799 -165577341 + AluY SINE Alu 1 296 -15 1084 295 117 52 chrX 11396799 11397342 -165576798 - L2 LINE L2 -809 2505 1894 238 270 14 68 chrX 11397835 11397909 -165576231 + L2 LINE L2 3116 3185 -87 546 269 12 25 chrX 11398399 11398559 -165575581 - MER74A LTR ERVL -13 545 388 2473 80 3 0 chrX 11398559 11398861 -165575279 + AluSx SINE Alu 1 303 -9 1443 139 126 47 chrX 11398890 11399164 -165574976 - MER74A LTR ERVL -233 325 24 2313 96 7 0 chrX 11399164 11399466 -165574674 + AluSx SINE Alu 1 304 -8 1443 139 126 47 chrX 11399466 11399492 -165574648 - MER74A LTR ERVL -534 24 1 1757 93 14 50 chrX 11400096 11400374 -165573766 - L1MB3 LINE L1 -4 6179 5912 387 148 0 0 chrX 11401251 11401312 -165572828 - MER94 DNA DNA -35 99 39 1919 160 3 0 chrX 11401329 11401623 -165572517 + AluJo SINE Alu 1 295 -17 479 261 65 38 chrX 11402025 11402209 -165571931 + MIR SINE MIR 7 195 -67 2110 122 10 6 chrX 11402228 11402539 -165571601 + AluSx SINE Alu 1 312 0 953 144 0 0 chrX 11403367 11403499 -165570641 + FLAM_C SINE Alu 2 133 0 2374 47 40 3 chrX 11403763 11404061 -165570079 + AluY SINE Alu 1 309 -2 9098 179 35 42 chrX 11405135 11406427 -165567713 - L1MB8 LINE L1 -1 6988 5687 2004 103 107 0 chrX 11406427 11406699 -165567441 - AluSx SINE Alu -11 301 1 9098 179 35 42 chrX 11406699 11408411 -165565729 - L1MB8 LINE L1 -1302 5687 4010 2460 87 62 0 chrX 11408411 11408766 -165565374 - MER51B LTR ERV1 0 377 1 9098 179 35 42 chrX 11408766 11409318 -165564822 - L1MB8 LINE L1 -2979 4010 3455 5422 208 50 50 chrX 11409318 11410757 -165563383 - L1MB8 LINE L1 -5335 1524 83 2072 121 0 0 chrX 11410757 11411047 -165563093 + AluJb SINE Alu 2 291 -21 5422 208 50 50 chrX 11411047 11411115 -165563025 - L1MB8 LINE L1 -6775 84 17 2261 119 0 0 chrX 11411690 11411984 -165562156 - AluSx SINE Alu -18 294 1 23 0 0 0 chrX 11413193 11413216 -165560924 + AT_rich Low_complexity Low_complexity 1 23 0 703 212 21 108 chrX 11413239 11413422 -165560718 - L2 LINE L2 0 3313 3154 2255 73 30 7 chrX 11413422 11413722 -165560418 - AluY SINE Alu -4 307 1 703 212 21 108 chrX 11413722 11413779 -165560361 - L2 LINE L2 -159 3154 3094 606 204 0 9 chrX 11413807 11413920 -165560220 - AluJ SINE Alu -10 302 191 949 139 0 0 chrX 11413924 11414061 -165560079 - AluJ SINE Alu -175 137 1 209 259 102 46 chrX 11414096 11414204 -165559936 - MIR SINE MIR -76 132 19 2079 116 0 14 chrX 11414361 11414654 -165559486 - AluSg SINE Alu -21 289 1 2337 72 10 0 chrX 11414684 11414976 -165559164 + AluSg SINE Alu 1 295 -15 329 151 0 0 chrX 11414986 11415039 -165559101 + AluSg/x SINE Alu 133 185 -115 402 300 84 26 chrX 11415332 11415522 -165558618 - MIR SINE MIR -3 259 59 4554 170 48 40 chrX 11415558 11416211 -165557929 - L1MB5 LINE L1 -6 6168 5521 186 43 0 0 chrX 11416211 11416234 -165557906 + (TCC)n Simple_repeat Simple_repeat 2 24 0 1855 131 40 7 chrX 11416235 11416510 -165557630 - AluSx SINE Alu -28 284 1 4554 170 48 40 chrX 11416510 11417030 -165557110 - L1MB5 LINE L1 -653 5521 5006 807 104 8 15 chrX 11417030 11417164 -165556976 - L1PB4 LINE L1 -3 6153 6021 4554 170 48 40 chrX 11417164 11417759 -165556381 - L1MB5 LINE L1 -1168 5006 4393 289 109 0 0 chrX 11417760 11417806 -165556334 - Alu SINE Alu -8 293 248 2207 136 0 0 chrX 11417807 11418116 -165556024 - AluSx SINE Alu -3 309 1 328 214 0 127 chrX 11418139 11418265 -165555875 - L1MB5 LINE L1 -1716 4430 4321 2229 103 13 13 chrX 11418265 11418567 -165555573 - AluSx SINE Alu -10 302 1 1683 204 21 3 chrX 11418578 11418955 -165555185 - L1MB4 LINE L1 0 6180 5797 262 205 24 48 chrX 11419064 11419147 -165554993 - L1MB4 LINE L1 -2100 4046 3966 1038 151 26 5 chrX 11419187 11419379 -165554761 - L1M3 LINE L1 -396 5784 5589 1447 203 17 17 chrX 11419380 11419740 -165554400 - L1MB5 LINE L1 -1819 4327 3968 331 303 72 20 chrX 11419784 11419979 -165554161 - L1M4 LINE L1 -6332 210 6 1433 228 35 2 chrX 11419984 11420388 -165553752 - L1MCa LINE L1 -901 5525 5109 1111 176 0 109 chrX 11420388 11420584 -165553556 - AluJo SINE Alu -6 306 143 2011 133 7 3 chrX 11420584 11420870 -165553270 - AluSx SINE Alu -25 287 1 1111 176 0 109 chrX 11420870 11420929 -165553211 - AluJo SINE Alu -169 143 79 6762 233 55 31 chrX 11420929 11421216 -165552924 - L1MCa LINE L1 -1313 5113 4834 2318 96 0 0 chrX 11421216 11421518 -165552622 - AluSx SINE Alu -10 302 1 6762 233 55 31 chrX 11421518 11422251 -165551889 - L1MCa LINE L1 -1592 4834 4120 2519 59 3 0 chrX 11422251 11422554 -165551586 - AluSp SINE Alu -9 304 1 6762 233 55 31 chrX 11422554 11424043 -165550097 - L1MCa LINE L1 -2306 4120 2543 234 128 0 0 chrX 11424046 11424085 -165550055 + (TC)n Simple_repeat Simple_repeat 2 40 0 1980 142 0 7 chrX 11424119 11424407 -165549733 - AluJb SINE Alu -26 286 1 5370 185 124 40 chrX 11424434 11425519 -165548621 - L1MCa LINE L1 -3947 2479 1487 2386 64 0 32 chrX 11425519 11425833 -165548307 + AluSc SINE Alu 2 305 -4 5370 185 124 40 chrX 11425833 11427159 -165546981 - L1MCa LINE L1 -4939 1487 86 2823 25 0 0 chrX 11427159 11427477 -165546663 - AluYb8 SINE Alu 0 318 1 5370 185 124 40 chrX 11427477 11427565 -165546575 - L1MCa LINE L1 -6340 86 7 32 95 0 0 chrX 11428500 11428595 -165545545 + AT_rich Low_complexity Low_complexity 1 95 0 254 368 33 20 chrX 11429555 11429707 -165544433 + L2 LINE L2 2852 3005 -267 295 204 258 0 chrX 11429819 11429951 -165544189 + MER104 DNA Tc2 13 178 -2 534 244 57 0 chrX 11429966 11430089 -165544051 + L2 LINE L2 3139 3268 -4 2461 84 3 0 chrX 11431906 11432217 -165541923 - AluSx SINE Alu 0 312 1 700 194 7 7 chrX 11432667 11432806 -165541334 - MER119 DNA MER1_type -216 367 229 2679 211 69 14 chrX 11432808 11434239 -165539901 - L1MD2 LINE L1 -10 6743 5205 * 2837 234 44 18 chrX 11434238 11435202 -165538938 - L1MD2 LINE L1 -2533 4007 3019 4430 188 94 75 chrX 11435232 11435628 -165538512 - L1MD2 LINE L1 -4120 2420 2033 1906 138 0 24 chrX 11435628 11435948 -165538192 - AluJb SINE Alu 0 313 1 4430 188 94 75 chrX 11435948 11436166 -165537974 - L1MD2 LINE L1 -4507 2033 1821 2393 72 0 3 chrX 11436166 11436458 -165537682 - AluSc SINE Alu -18 291 1 4430 188 94 75 chrX 11436458 11436988 -165537152 - L1MD2 LINE L1 -4719 1821 1302 1725 155 40 10 chrX 11436988 11437291 -165536849 - AluJb SINE Alu 0 312 1 4430 188 94 75 chrX 11437291 11437784 -165536356 - L1MD2 LINE L1 -5238 1302 749 735 185 73 15 chrX 11437784 11437989 -165536151 - L1MD2 LINE L1 -6074 466 250 * 937 195 29 24 chrX 11437987 11438233 -165535907 - L1MDb LINE L1 -5307 1236 990 849 248 78 23 chrX 11438673 11439020 -165535120 - L1MDb LINE L1 -6158 382 17 22 56 0 0 chrX 11439089 11439125 -165535015 + AT_rich Low_complexity Low_complexity 1 36 0 253 336 58 29 chrX 11439134 11439238 -165534902 - L2 LINE L2 -33 3239 3133 916 213 20 10 chrX 11439892 11440089 -165534051 - MIR SINE MIR -44 218 20 1886 147 3 28 chrX 11440417 11440737 -165533403 + AluJo SINE Alu 1 312 0 2376 88 3 3 chrX 11441724 11442029 -165532111 - AluSq SINE Alu -4 309 5 223 195 0 0 chrX 11442579 11442620 -165531520 + L2 LINE L2 3262 3302 -11 236 30 30 0 chrX 11442622 11442655 -165531485 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2920 127 44 10 chrX 11443291 11443787 -165530353 - LTR10D LTR ERV1 0 513 1 760 269 170 10 chrX 11446048 11446465 -165527675 - Tigger8 DNA MER2_type -160 506 23 1697 141 11 28 chrX 11447031 11447360 -165526780 - AluJb SINE Alu 0 328 5 2456 75 0 0 chrX 11447443 11447737 -165526403 + AluSg SINE Alu 15 308 -2 192 276 118 70 chrX 11448471 11448743 -165525397 - L2 LINE L2 -673 2641 2357 438 20 0 0 chrX 11448924 11448975 -165525165 + (TG)n Simple_repeat Simple_repeat 2 52 0 1717 96 0 21 chrX 11448975 11449214 -165524926 - AluSx SINE Alu -26 286 53 1754 42 0 5 chrX 11449536 11449752 -165524388 - L1PA5 LINE L1 0 6154 5940 2411 90 0 0 chrX 11449886 11450187 -165523953 - AluSx SINE Alu -11 301 1 616 72 0 0 chrX 11450412 11450495 -165523645 - L1PA7 LINE L1 -1 6153 6071 769 191 121 20 chrX 11450566 11450765 -165523375 - MER20 DNA MER1_type 0 219 1 21 57 0 0 chrX 11451590 11451625 -165522515 + AT_rich Low_complexity Low_complexity 1 35 0 762 274 46 21 chrX 11451853 11452094 -165522046 + MIR SINE MIR 1 247 -15 1758 90 0 0 chrX 11452156 11452378 -165521762 + AluSg/x SINE Alu 85 306 -6 259 61 0 0 chrX 11452388 11452421 -165521719 - U2 snRNA snRNA -155 33 1 1202 168 83 80 chrX 11452625 11452964 -165521176 - MER2 DNA MER2_type -5 340 1 216 0 0 0 chrX 11454671 11454695 -165519445 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2164 90 4 0 chrX 11454699 11454978 -165519162 - AluSg SINE Alu -30 280 1 5897 29 1 0 chrX 11455106 11455794 -165518346 - L1PA3 LINE L1 -2 6153 5465 356 233 41 0 chrX 11455995 11456068 -165518072 - L2 LINE L2 -5 3308 3233 355 275 45 51 chrX 11456222 11456248 -165517892 + HAL1b LINE L1 275 300 -1048 216 0 0 0 chrX 11456248 11456272 -165517868 + (CA)n Simple_repeat Simple_repeat 2 25 0 355 275 45 51 chrX 11456272 11456423 -165517717 + HAL1b LINE L1 300 451 -897 345 316 20 0 chrX 11456564 11456662 -165517478 - MER91B DNA MER1_type -61 129 30 369 320 102 40 chrX 11456678 11457000 -165517140 + HAL1b LINE L1 474 815 -533 362 252 80 20 chrX 11457649 11457800 -165516340 + L1ME4a LINE L1 5503 5662 -459 244 244 142 31 chrX 11457969 11458096 -165516044 + L1ME4a LINE L1 5973 6113 -8 267 79 0 0 chrX 11459998 11460036 -165514104 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chrX 11460311 11460334 -165513806 + AT_rich Low_complexity Low_complexity 1 23 0 502 226 109 54 chrX 11460721 11460960 -165513180 + MER112 DNA MER1_type 8 259 -1 2033 120 0 13 chrX 11461628 11461927 -165512213 - AluJb SINE Alu -17 295 1 2070 141 14 22 chrX 11462990 11463071 -165511069 - MER47A DNA MER2_type -1957 366 286 2079 126 3 14 chrX 11463071 11463364 -165510776 + AluJb SINE Alu 1 290 -22 2070 141 14 22 chrX 11463364 11463650 -165510490 - MER47A DNA MER2_type -2037 286 2 215 278 0 0 chrX 11464116 11464170 -165509970 + CT-rich Low_complexity Low_complexity 1 54 0 1906 146 0 4 chrX 11464185 11464466 -165509674 - AluJo SINE Alu -32 280 1 233 273 11 45 chrX 11466524 11466612 -165507528 - MIR3 SINE MIR -12 196 112 210 281 191 0 chrX 11466809 11466898 -165507242 + MIR SINE MIR 40 145 -117 286 309 0 106 chrX 11467644 11467767 -165506373 - MIR3 SINE MIR -94 114 5 532 288 135 54 chrX 11468220 11468686 -165505454 - L2 LINE L2 -3 3310 2807 812 202 49 9 chrX 11469624 11469909 -165504231 - MER46C DNA MER2_type -12 326 1 22 56 0 0 chrX 11469968 11470004 -165504136 + AT_rich Low_complexity Low_complexity 1 36 0 939 113 0 8 chrX 11471618 11471751 -165502389 + FLAM_C SINE Alu 1 132 -1 24 77 0 0 chrX 11472262 11472314 -165501826 + AT_rich Low_complexity Low_complexity 1 52 0 1068 172 0 0 chrX 11472369 11472532 -165501608 - FAM SINE Alu -12 163 1 24 0 0 0 chrX 11472655 11472679 -165501461 + AT_rich Low_complexity Low_complexity 1 24 0 236 353 0 0 chrX 11472720 11472805 -165501335 - MIR SINE MIR -94 114 30 373 204 97 9 chrX 11472927 11473040 -165501100 - MLT1J LTR MaLR -11 500 378 432 240 158 0 chrX 11473100 11473246 -165500894 - MLT1J LTR MaLR -341 170 2 23 86 0 0 chrX 11473752 11473810 -165500330 + AT_rich Low_complexity Low_complexity 1 58 0 617 224 71 0 chrX 11473911 11474094 -165500046 - Charlie1 DNA MER1_type 0 2761 2566 * 1778 206 84 31 chrX 11474093 11474582 -165499558 - Charlie1a DNA MER1_type -940 515 1 21 0 0 0 chrX 11476183 11476204 -165497936 + AT_rich Low_complexity Low_complexity 1 21 0 734 266 115 63 chrX 11479928 11480450 -165493690 - MLT1H LTR MaLR 0 549 1 207 342 25 0 chrX 11480502 11480581 -165493559 - L2 LINE L2 0 3313 3233 1883 158 0 16 chrX 11480583 11480899 -165493241 + AluSx SINE Alu 1 311 -1 26 30 0 0 chrX 11481339 11481372 -165492768 + AT_rich Low_complexity Low_complexity 1 33 0 2183 123 0 3 chrX 11484104 11484413 -165489727 + AluSx SINE Alu 3 310 -2 7383 40 7 0 chrX 11484614 11485768 -165488372 - L1PA5 LINE L1 -1 6153 4992 568 261 107 81 chrX 11486333 11486840 -165487300 + L2 LINE L2 2758 3299 -14 389 293 157 56 chrX 11487091 11487504 -165486636 + L2 LINE L2 2818 3272 0 195 284 0 40 chrX 11487837 11487911 -165486229 - L2 LINE L2 -212 3060 2990 641 302 67 4 chrX 11488390 11488615 -165485525 + MIR SINE MIR 10 248 -14 374 333 16 31 chrX 11489054 11489183 -165484957 + MIR SINE MIR 19 145 -63 2229 107 0 3 chrX 11490372 11490672 -165483468 + AluSg SINE Alu 1 299 -11 276 331 54 0 chrX 11491826 11491956 -165482184 - MER103 DNA DNA -19 147 11 465 278 77 40 chrX 11492457 11492705 -165481435 - L1ME3A LINE L1 -37 6133 5877 2290 102 13 0 chrX 11493063 11493367 -165480773 - AluSq SINE Alu -5 308 1 21 0 0 0 chrX 11493616 11493637 -165480503 + AT_rich Low_complexity Low_complexity 1 21 0 266 206 28 47 chrX 11493757 11493864 -165480276 + L1ME4a LINE L1 6016 6120 -1 1758 189 0 6 chrX 11494913 11495226 -165478914 - AluJo SINE Alu -1 311 1 1381 161 146 0 chrX 11495315 11495569 -165478571 - AluJb SINE Alu -11 291 1 213 39 0 0 chrX 11496849 11496875 -165477265 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 534 282 83 40 chrX 11497384 11497732 -165476408 - LTR33 LTR ERVL -158 363 1 738 137 0 0 chrX 11500972 11501089 -165473051 + AluSg/x SINE Alu 196 312 0 279 258 0 0 chrX 11501151 11501213 -165472927 + MIR SINE MIR 201 262 0 2166 85 4 0 chrX 11501373 11501644 -165472496 + AluSc SINE Alu 1 272 -37 363 23 0 0 chrX 11501646 11501690 -165472450 + (CA)n Simple_repeat Simple_repeat 1 44 0 248 304 82 70 chrX 11502256 11502414 -165471726 - L2 LINE L2 -681 2633 2474 466 296 17 26 chrX 11502447 11502618 -165471522 - MIR3 SINE MIR -24 184 13 21 36 0 0 chrX 11504003 11504031 -165470109 + AT_rich Low_complexity Low_complexity 1 28 0 1940 149 0 3 chrX 11504586 11504874 -165469266 + AluJo SINE Alu 5 291 -21 227 264 150 37 chrX 11505163 11505324 -165468816 + L2 LINE L2 2564 2735 -579 428 309 42 37 chrX 11505338 11505529 -165468611 - L2 LINE L2 -17 3296 3105 203 340 13 53 chrX 11505568 11505718 -165468422 + L2 LINE L2 2720 2863 -451 2415 77 0 16 chrX 11506620 11506931 -165467209 + AluY SINE Alu 1 306 -5 25 31 0 0 chrX 11506947 11506979 -165467161 + AT_rich Low_complexity Low_complexity 1 32 0 1827 174 43 0 chrX 11507857 11508156 -165465984 + AluJb SINE Alu 1 312 0 1149 154 0 0 chrX 11508416 11508591 -165465549 + AluJb SINE Alu 133 307 -5 319 336 86 41 chrX 11509045 11509265 -165464875 - MIR SINE MIR -32 230 1 614 222 21 0 chrX 11509923 11510067 -165464073 + MIR SINE MIR 109 255 -7 1685 185 4 0 chrX 11510907 11511188 -165462952 - AluJb SINE Alu -30 282 1 2387 89 3 0 chrX 11511815 11512118 -165462022 + AluSp SINE Alu 1 304 -9 258 342 0 0 chrX 11512505 11512584 -165461556 + L2 LINE L2 3188 3266 -6 2167 138 0 0 chrX 11514158 11514463 -165459677 + AluSx SINE Alu 1 305 -7 792 152 23 15 chrX 11514631 11514763 -165459377 - FLAM_C SINE Alu 0 133 1 1802 142 59 3 chrX 11516214 11516503 -165457637 - AluJb SINE Alu -7 305 1 221 325 90 48 chrX 11518103 11518269 -165455871 - MIR3 SINE MIR -12 196 24 1922 149 0 10 chrX 11521538 11521840 -165452300 - AluJb SINE Alu -13 299 1 590 71 12 0 chrX 11522133 11522217 -165451923 + (TC)n Simple_repeat Simple_repeat 1 85 0 1200 183 5 9 chrX 11522224 11522437 -165451703 - AluJo SINE Alu -16 296 85 207 69 0 0 chrX 11523255 11523284 -165450856 + (A)n Simple_repeat Simple_repeat 1 29 0 631 314 43 5 chrX 11523359 11523547 -165450593 + MLT1J LTR MaLR 67 261 -250 23 33 0 0 chrX 11524910 11524940 -165449200 + AT_rich Low_complexity Low_complexity 1 30 0 1217 150 14 27 chrX 11527355 11527575 -165446565 + MER20 DNA MER1_type 3 219 0 851 236 6 0 chrX 11531275 11531453 -165442687 - MER58A DNA MER1_type -1 223 45 580 264 116 28 chrX 11531758 11531808 -165442332 - MIR SINE MIR -10 252 208 423 0 0 0 chrX 11531808 11531855 -165442285 + (TTA)n Simple_repeat Simple_repeat 2 48 0 580 264 116 28 chrX 11531855 11532020 -165442120 - MIR SINE MIR -54 208 18 2035 115 0 37 chrX 11532447 11532590 -165441550 + AluSx SINE Alu 1 148 -156 2372 78 17 0 chrX 11532590 11532884 -165441256 + AluSg SINE Alu 9 307 -3 2035 115 0 37 chrX 11532884 11533055 -165441085 + AluSx SINE Alu 148 304 0 617 222 58 12 chrX 11533065 11533236 -165440904 + MIR SINE MIR 34 212 -50 4324 157 75 19 chrX 11534148 11535654 -165438486 + L1MB8 LINE L1 4592 6178 0 910 132 201 0 chrX 11537818 11537992 -165436148 - MER3 DNA MER1_type 0 209 1 2190 109 0 16 chrX 11538229 11538541 -165435599 + AluSx SINE Alu 1 307 -5 21 0 0 0 chrX 11539299 11539320 -165434820 + AT_rich Low_complexity Low_complexity 1 21 0 578 295 140 29 chrX 11540769 11541226 -165432914 + L2 LINE L2 2226 2631 -641 1284 266 58 50 chrX 11541226 11541624 -165432516 + MLT1J LTR MaLR 4 408 -103 2269 103 0 10 chrX 11541624 11541926 -165432214 - AluSx SINE Alu -13 299 1 1284 266 58 50 chrX 11541926 11542030 -165432110 + MLT1J LTR MaLR 408 510 -1 578 295 140 29 chrX 11542030 11542306 -165431834 + L2 LINE L2 2631 3055 -217 1627 93 5 5 chrX 11542391 11542605 -165431535 - AluSg/x SINE Alu -15 295 82 739 109 18 0 chrX 11543527 11543637 -165430503 + AluSg/x SINE Alu 135 246 -64 542 265 159 51 chrX 11543666 11543709 -165430431 + MLT1J LTR MaLR 6 43 -468 1904 157 7 3 chrX 11543709 11544014 -165430126 - AluJb SINE Alu -6 306 1 542 265 159 51 chrX 11544014 11544279 -165429861 + MLT1J LTR MaLR 43 381 -130 1548 121 191 4 chrX 11544279 11544536 -165429604 + AluJo SINE Alu 1 305 -7 542 265 159 51 chrX 11544536 11544679 -165429461 + MLT1J LTR MaLR 381 507 -4 669 156 8 0 chrX 11544708 11544830 -165429310 - FRAM SINE Alu -13 163 41 477 227 133 0 chrX 11546083 11546233 -165427907 - MER5B DNA MER1_type 0 178 9 450 172 20 30 chrX 11546293 11546392 -165427748 + MIR SINE MIR 94 191 -71 405 0 0 0 chrX 11546692 11546737 -165427403 + (TG)n Simple_repeat Simple_repeat 1 45 0 341 94 0 16 chrX 11546737 11546801 -165427339 + (GA)n Simple_repeat Simple_repeat 2 64 0 2333 96 0 0 chrX 11547858 11548151 -165425989 + AluSx SINE Alu 1 293 -19 2332 97 7 3 chrX 11549158 11549468 -165424672 + AluSx SINE Alu 1 311 -1 1108 159 63 34 chrX 11549621 11549828 -165424312 - AluJb SINE Alu -14 298 86 1041 213 37 0 chrX 11550715 11550931 -165423209 + MER58A DNA MER1_type 1 224 0 468 275 47 21 chrX 11550939 11551132 -165423008 - MLT1I LTR MaLR -13 396 199 238 254 205 16 chrX 11551283 11551405 -165422735 - MIR SINE MIR -98 164 20 2069 151 3 0 chrX 11551452 11551763 -165422377 - AluJb SINE Alu 0 312 1 247 214 71 0 chrX 11552302 11552358 -165421782 + MER58 DNA MER1_type 199 258 -2162 2382 105 0 7 chrX 11552689 11552994 -165421146 - AluSx SINE Alu -9 303 1 2172 107 7 0 chrX 11553361 11553659 -165420481 + AluSx SINE Alu 1 300 -12 368 239 78 55 chrX 11553674 11553892 -165420248 - L1ME4a LINE L1 -28 6093 5871 2429 97 0 3 chrX 11553917 11554228 -165419912 - AluSq SINE Alu -3 310 1 345 24 0 0 chrX 11554248 11554290 -165419850 + (CAT)n Simple_repeat Simple_repeat 2 43 0 976 192 9 55 chrX 11554599 11554663 -165419477 - MER3 DNA MER1_type 0 209 144 2065 114 31 3 chrX 11554663 11554952 -165419188 + AluSx SINE Alu 1 297 -15 976 192 9 55 chrX 11554952 11555106 -165419034 - MER3 DNA MER1_type -65 144 1 456 236 199 62 chrX 11555117 11555358 -165418782 + MER39 LTR ERV1 1 274 -433 * 1408 203 95 67 chrX 11555330 11555705 -165418435 + MER39 LTR ERV1 164 707 0 1735 94 31 0 chrX 11555756 11555980 -165418160 - AluSx SINE Alu -81 231 1 936 149 58 0 chrX 11556563 11556717 -165417423 + MLT1A1 LTR MaLR 1 163 -202 3155 147 52 42 chrX 11556719 11557518 -165416622 - LTR1 LTR ERV1 0 785 22 1242 155 33 0 chrX 11557517 11557723 -165416417 + MLT1A1 LTR MaLR 166 365 0 * 3212 55 19 17 chrX 11557782 11558101 -165416039 - L1PA5 LINE L1 -8 6146 5824 2664 47 0 0 chrX 11558101 11558398 -165415742 - AluY SINE Alu -14 297 1 3212 55 19 17 chrX 11558398 11558495 -165415645 - L1PA5 LINE L1 -330 5824 5729 2418 82 10 0 chrX 11558504 11558809 -165415331 - AluSp SINE Alu -5 308 1 2013 117 16 23 chrX 11558809 11559117 -165415023 - AluJo SINE Alu -6 306 1 191 324 29 20 chrX 11559201 11559303 -165414837 + L2 LINE L2 2037 2139 -1175 1509 264 32 16 chrX 11559379 11559815 -165414325 + L1ME3A LINE L1 5495 5937 -233 2266 103 0 3 chrX 11559817 11560118 -165414022 + AluSx SINE Alu 1 300 -12 1853 124 0 11 chrX 11560158 11560476 -165413664 - AluJo SINE Alu 0 328 14 222 37 0 0 chrX 11560626 11560653 -165413487 + (CTG)n Simple_repeat Simple_repeat 3 29 0 251 140 20 0 chrX 11560751 11560801 -165413339 + (TG)n Simple_repeat Simple_repeat 1 51 0 541 281 78 29 chrX 11565268 11565510 -165408630 - MIR SINE MIR -1 261 8 1575 183 3 11 chrX 11565547 11565832 -165408308 - AluJb SINE Alu -21 291 9 2190 108 0 3 chrX 11566357 11566643 -165407497 - AluSx SINE Alu -23 289 5 2211 97 6 19 chrX 11566753 11567064 -165407076 - AluSx SINE Alu -4 308 2 2332 56 3 17 chrX 11567317 11567604 -165406536 - AluY SINE Alu -5 306 24 554 212 14 27 chrX 11567616 11567762 -165406378 - L1MB8 LINE L1 0 6178 6035 1858 131 0 77 chrX 11567822 11567990 -165406150 - AluJb SINE Alu -23 289 154 2397 107 3 0 chrX 11567990 11568300 -165405840 - AluSx SINE Alu -1 311 1 1858 131 0 77 chrX 11568300 11568444 -165405696 - AluJb SINE Alu -158 154 1 1787 168 0 29 chrX 11568506 11568816 -165405324 - AluJb SINE Alu -11 301 1 2138 143 0 3 chrX 11568847 11569161 -165404979 + AluSq SINE Alu 1 313 0 2275 81 10 3 chrX 11569172 11569467 -165404673 + AluSp SINE Alu 1 297 -16 21 36 0 0 chrX 11570453 11570481 -165403659 + AT_rich Low_complexity Low_complexity 1 28 0 2138 128 0 0 chrX 11570548 11570845 -165403295 + AluSx SINE Alu 1 297 -15 21 57 0 0 chrX 11571294 11571329 -165402811 + AT_rich Low_complexity Low_complexity 1 35 0 246 200 100 50 chrX 11571365 11571465 -165402675 - L2 LINE L2 -1 3312 3208 2069 120 0 0 chrX 11571482 11571756 -165402384 - AluSx SINE Alu -25 287 14 2723 88 31 149 chrX 11571819 11572308 -165401832 - Tigger2 DNA MER2_type -3 2715 1 310 266 119 21 chrX 11572354 11572497 -165401643 - L2 LINE L2 -262 3051 2895 2061 120 19 13 chrX 11572520 11572828 -165401312 + AluJb SINE Alu 1 310 -2 2399 89 0 0 chrX 11573963 11574266 -165399874 - AluSg SINE Alu -7 303 1 2475 73 0 3 chrX 11574411 11574712 -165399428 + AluSg SINE Alu 1 300 -10 376 238 158 0 chrX 11574822 11574923 -165399217 + L2 LINE L2 3182 3298 -15 285 29 0 0 chrX 11575297 11575331 -165398809 + (TG)n Simple_repeat Simple_repeat 2 35 0 3659 152 48 21 chrX 11575348 11575460 -165398680 - Tigger1 DNA MER2_type 0 2418 2311 2158 112 10 0 chrX 11575460 11575756 -165398384 + AluSx SINE Alu 1 299 -13 3659 152 48 21 chrX 11575756 11576307 -165397833 - Tigger1 DNA MER2_type -107 2311 1737 378 197 30 0 chrX 11576294 11576360 -165397780 - AluJ/FLAM SINE Alu -234 68 1 * 1814 127 4 11 chrX 11576366 11576634 -165397506 - AluSq SINE Alu -6 307 42 936 235 76 73 chrX 11576636 11576722 -165397418 - L1MCc LINE L1 -5152 1271 1187 1978 204 114 32 chrX 11576722 11577036 -165397104 - MER87 LTR ERV1 0 541 169 2213 116 3 0 chrX 11577036 11577328 -165396812 + AluJb SINE Alu 1 293 -19 1978 204 114 32 chrX 11577328 11577513 -165396627 - MER87 LTR ERV1 -372 169 1 936 235 76 73 chrX 11577513 11577822 -165396318 - L1MCc LINE L1 -5236 1187 875 2327 57 0 4 chrX 11578370 11578695 -165395445 - AluY SINE Alu 0 325 2 372 336 81 18 chrX 11579018 11579241 -165394899 - HAL1 LINE L1 -745 1762 1526 1249 77 35 0 chrX 11579252 11579422 -165394718 - L1PA14 LINE L1 -1 6160 5985 1690 75 18 0 chrX 11579468 11579696 -165394444 - L1PA14 LINE L1 -1 6160 5929 560 144 44 0 chrX 11579715 11579805 -165394335 - AluJ/FLAM SINE Alu -217 95 2 23 0 0 0 chrX 11579910 11579933 -165394207 + AT_rich Low_complexity Low_complexity 1 23 0 258 289 85 24 chrX 11580025 11580300 -165393840 - L1MEd LINE L1 -4862 1257 949 195 227 0 0 chrX 11580330 11580396 -165393744 + (TA)n Simple_repeat Simple_repeat 2 67 0 762 161 0 8 chrX 11580397 11580515 -165393625 - FLAM_C SINE Alu -12 121 5 2430 93 0 0 chrX 11580979 11581280 -165392860 - AluSx SINE Alu -11 301 1 1870 126 87 36 chrX 11581427 11581784 -165392356 + THE1C LTR MaLR 1 375 0 2036 70 37 60 chrX 11581984 11582282 -165391858 + AluSq SINE Alu 21 311 -2 973 137 63 47 chrX 11582968 11583158 -165390982 + MER20 DNA MER1_type 22 214 -5 388 294 92 33 chrX 11583241 11583513 -165390627 + L2 LINE L2 1707 1994 -1320 546 149 0 0 chrX 11583743 11583830 -165390310 - AluJ/FRAM SINE Alu -10 302 216 729 150 8 8 chrX 11583834 11583954 -165390186 - FLAM_C SINE Alu -23 120 1 226 319 76 17 chrX 11583967 11584086 -165390054 + L2 LINE L2 2256 2381 -933 254 299 72 53 chrX 11584145 11584352 -165389788 + L2 LINE L2 2669 2879 -435 2363 90 0 16 chrX 11584745 11585057 -165389083 - AluSg1 SINE Alu -2 307 1 2400 81 0 0 chrX 11585697 11585995 -165388145 - AluSc SINE Alu -11 298 1 345 311 10 0 chrX 11586180 11586283 -165387857 + MIR SINE MIR 153 256 -6 2301 99 0 0 chrX 11586485 11586777 -165387363 - AluSq SINE Alu -21 292 1 199 193 140 18 chrX 11586871 11586928 -165387212 - MIR SINE MIR -72 190 127 2321 96 3 0 chrX 11587091 11587393 -165386747 - AluSp SINE Alu -10 303 1 1942 131 3 7 chrX 11587452 11587742 -165386398 - AluJb SINE Alu -23 289 1 1651 108 0 0 chrX 11588328 11588542 -165385598 - AluSg/x SINE Alu -12 298 85 2313 98 0 3 chrX 11588722 11589027 -165385113 - AluSg SINE Alu -1 309 6 2305 114 0 0 chrX 11590130 11590437 -165383703 - AluSg SINE Alu -3 307 1 1778 125 4 0 chrX 11590462 11590710 -165383430 - AluSx SINE Alu -15 297 49 746 159 179 0 chrX 11590793 11590938 -165383202 - AluSg/x SINE Alu -10 302 132 232 231 0 0 chrX 11591736 11591775 -165382365 - Tigger3(Golem) DNA MER2_type -2989 40 2 2261 93 36 0 chrX 11591938 11592240 -165381900 - AluSq SINE Alu 0 313 1 228 227 216 10 chrX 11593194 11593291 -165380849 - L2 LINE L2 -13 3300 3184 190 266 47 0 chrX 11593314 11593378 -165380762 - MIR SINE MIR -10 252 186 286 207 35 58 chrX 11593416 11593503 -165380637 + HsTC2 DNA Tc2 1 85 -1813 195 69 0 0 chrX 11593507 11593536 -165380604 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2132 115 0 0 chrX 11593538 11593816 -165380324 - AluSg SINE Alu -32 278 1 2568 71 0 7 chrX 11593816 11594125 -165380015 - AluSq SINE Alu -5 308 1 256 200 229 0 chrX 11594261 11594366 -165379774 + MER3 DNA MER1_type 28 156 -53 1386 137 0 89 chrX 11594379 11594649 -165379491 + AluJb SINE Alu 63 308 -4 873 163 0 0 chrX 11594651 11594780 -165379360 - MER3 DNA MER1_type -80 129 1 733 105 92 92 chrX 11595134 11595176 -165378964 - MSTA LTR MaLR 0 428 387 2209 100 7 19 chrX 11595176 11595486 -165378654 + AluSx SINE Alu 1 306 -6 733 105 92 92 chrX 11595486 11595595 -165378545 - MSTA LTR MaLR -40 388 277 1393 102 0 0 chrX 11595597 11595774 -165378366 - AluSc SINE Alu -1 308 132 2044 86 9 93 chrX 11595774 11596098 -165378042 - AluSc SINE Alu -12 297 1 1485 154 47 18 chrX 11596098 11596377 -165377763 - MSTA LTR MaLR -141 287 1 1815 156 3 10 chrX 11596385 11596703 -165377437 - AluJb SINE Alu 0 316 1 632 236 44 28 chrX 11596971 11597153 -165376987 - L1ME LINE L1 -362 5800 5616 1520 92 40 31 chrX 11597874 11598101 -165376039 - MER30 DNA MER1_type -1 229 1 1152 149 39 0 chrX 11598233 11598414 -165375726 + MER5A DNA MER1_type 2 189 0 2536 87 0 0 chrX 11598644 11598956 -165375184 + AluSx SINE Alu 1 312 0 219 36 0 0 chrX 11599916 11599944 -165374196 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 327 251 43 74 chrX 11600046 11600147 -165373993 - L1ME LINE L1 -2329 5479 5376 755 190 0 29 chrX 11600147 11600284 -165373856 - FLAM_C SINE Alu 0 133 1 327 251 43 74 chrX 11600284 11600413 -165373727 - L1ME LINE L1 -2432 5376 5256 729 211 25 12 chrX 11600616 11600777 -165373363 + MER97a DNA MER1_type? 1 163 -731 1064 267 151 46 chrX 11600815 11601286 -165372854 - L1ME LINE L1 -954 5192 4771 2222 84 0 14 chrX 11601286 11601594 -165372546 + AluSx SINE Alu 2 305 0 1064 267 151 46 chrX 11601594 11601980 -165372160 - L1ME LINE L1 -1375 4771 4231 1998 124 17 7 chrX 11602417 11602715 -165371425 - AluJo SINE Alu -11 301 1 415 232 0 0 chrX 11602932 11603014 -165371126 + LTR32 LTR ERVL 7 88 -383 * 2381 167 19 30 chrX 11602994 11603456 -165370684 + LTR32 LTR ERVL 15 471 0 2369 104 0 0 chrX 11604959 11605268 -165368872 + AluSx SINE Alu 1 309 -3 2507 73 3 0 chrX 11605269 11605569 -165368571 + AluSp SINE Alu 1 301 -12 2319 113 3 0 chrX 11605957 11606268 -165367872 + AluSx SINE Alu 1 342 0 187 133 0 0 chrX 11606268 11606298 -165367842 + (GAAAA)n Simple_repeat Simple_repeat 4 180 0 1713 243 68 31 chrX 11606447 11607019 -165367121 - MLT2E LTR ERVL -3 625 1 1672 162 3 46 chrX 11607074 11607086 -165367054 - AluJo SINE Alu 0 501 490 1324 67 0 0 chrX 11607086 11607265 -165366875 - L1MA3 LINE L1 0 6305 6127 1672 162 3 46 chrX 11607265 11607588 -165366552 - AluJo SINE Alu -11 490 1 2019 144 0 3 chrX 11607630 11607943 -165366197 - AluSx SINE Alu 0 312 1 627 61 105 0 chrX 11607948 11608057 -165366083 - L1MA3 LINE L1 -164 6139 6015 2234 112 0 10 chrX 11608858 11609161 -165364979 - AluSx SINE Alu -12 300 1 375 288 35 48 chrX 11609327 11609556 -165364584 + MLT1J LTR MaLR 88 313 -198 711 144 0 8 chrX 11609606 11609724 -165364416 - AluSg/x SINE Alu -4 308 192 1772 112 115 0 chrX 11609799 11610068 -165364072 - AluSq SINE Alu -13 300 1 2361 93 7 7 chrX 11610851 11611161 -165362979 - AluSx SINE Alu -2 310 1 1873 162 3 10 chrX 11611185 11611499 -165362641 - AluJo SINE Alu 0 312 1 295 143 133 57 chrX 11612029 11612111 -165362029 - L1M4c LINE L1 -3660 2722 2629 1758 176 0 16 chrX 11612111 11612418 -165361722 - AluJb SINE Alu -9 303 2 295 143 133 57 chrX 11612418 11612440 -165361700 - L1M4c LINE L1 -3753 2629 2610 1098 259 52 79 chrX 11612548 11612677 -165361463 - L1M4c LINE L1 -3894 2490 2359 2380 75 0 10 chrX 11612677 11612970 -165361170 - AluSc SINE Alu -19 290 1 1774 135 87 14 chrX 11612980 11613269 -165360871 - AluSx SINE Alu -2 310 1 1098 259 52 79 chrX 11613269 11614179 -165359961 - L1M4c LINE L1 -4034 2350 1557 2317 108 0 13 chrX 11614179 11614493 -165359647 - AluSx SINE Alu -2 310 1 1098 259 52 79 chrX 11614493 11614597 -165359543 - L1M4c LINE L1 -4827 1557 1452 2160 113 0 16 chrX 11614609 11614918 -165359222 - AluSx SINE Alu -8 304 1 844 152 0 23 chrX 11614923 11615055 -165359085 - FLAM_C SINE Alu -14 129 1 926 159 49 160 chrX 11615055 11615213 -165358927 - L1M4 LINE L1 -4789 2168 1994 2512 71 0 0 chrX 11615213 11615521 -165358619 - AluY SINE Alu -3 308 1 926 159 49 160 chrX 11615521 11615802 -165358338 - L1M4 LINE L1 -4963 1994 1663 * 3157 139 18 27 chrX 11615797 11616394 -165357746 - L1MC3 LINE L1 0 7785 7194 265 267 11 11 chrX 11616397 11616487 -165357653 - MLT1F1 LTR MaLR -442 125 36 804 147 95 44 chrX 11616488 11616728 -165357412 - L1MC3 LINE L1 -688 7097 6860 2309 106 0 3 chrX 11616728 11617061 -165357079 - AluSx SINE Alu 0 332 1 832 136 0 73 chrX 11617113 11617223 -165356917 - L1MC3 LINE L1 -923 6862 6767 1799 128 14 38 chrX 11617223 11617564 -165356576 - AluJb SINE Alu 0 334 1 832 136 0 73 chrX 11617564 11617629 -165356511 - L1MC3 LINE L1 -1018 6767 6699 301 130 17 2 chrX 11617624 11617688 -165356452 - L1M4 LINE L1 -5180 1679 1612 * 819 226 153 95 chrX 11617688 11618153 -165355987 - L1M4 LINE L1 -6358 501 10 309 330 165 0 chrX 11619061 11619237 -165354903 - MIR SINE MIR 0 262 58 2234 88 3 17 chrX 11619327 11619622 -165354518 - AluSg SINE Alu -19 291 1 2058 116 0 24 chrX 11620219 11620512 -165353628 - AluSx SINE Alu -18 294 9 881 199 5 53 chrX 11620665 11620871 -165353269 - AluJb SINE Alu -26 286 91 29 28 0 0 chrX 11620989 11621025 -165353115 + AT_rich Low_complexity Low_complexity 1 36 0 562 282 19 5 chrX 11621412 11621618 -165352522 - LTR54 LTR ERV1 -9 501 293 445 160 64 80 chrX 11621631 11621756 -165352384 - LTR54 LTR ERV1 -326 184 62 362 384 68 17 chrX 11621985 11622222 -165351918 + L2 LINE L2 2836 3084 -188 191 156 0 0 chrX 11623008 11623040 -165351100 + L2 LINE L2 3274 3305 -8 202 273 0 36 chrX 11623096 11623151 -165350989 - MIR SINE MIR -58 150 98 225 283 61 91 chrX 11623152 11623214 -165350926 + L3 LINE CR1 1351 1410 -167 1582 185 28 3 chrX 11623214 11623501 -165350639 - AluJo SINE Alu -18 294 1 225 283 61 91 chrX 11623501 11623537 -165350603 + L3 LINE CR1 1410 1446 -131 2241 101 0 0 chrX 11623538 11623834 -165350306 + AluSx SINE Alu 3 298 -14 980 213 13 13 chrX 11624336 11624561 -165349579 + MER21B LTR ERV1 81 305 -558 1849 130 116 44 chrX 11624599 11625029 -165349111 + MER4D LTR ERV1 1 461 -442 722 105 0 19 chrX 11625029 11625134 -165349006 - AluSx SINE Alu -22 290 188 1497 92 0 0 chrX 11625161 11625357 -165348783 - AluSx SINE Alu -110 202 7 1614 92 76 62 chrX 11625363 11625667 -165348473 + MER4E LTR ERV1 346 653 -126 771 118 8 8 chrX 11625670 11625789 -165348351 + AluJb SINE Alu 1 119 -193 807 85 20 72 chrX 11625796 11625949 -165348191 + MER4E LTR ERV1 624 768 -11 1182 183 108 115 chrX 11625961 11626360 -165347780 + MER21B LTR ERV1 354 846 -85 235 341 37 0 chrX 11627198 11627280 -165346860 - MIR3 SINE MIR 0 208 124 1098 252 81 14 chrX 11627769 11628214 -165345926 - L1MC/D LINE L1 -2016 5792 5318 518 300 120 64 chrX 11628337 11629290 -165344850 + L2 LINE L2 2292 3310 -3 264 402 53 11 chrX 11629304 11629493 -165344647 - L3 LINE CR1 -1345 232 36 1622 159 31 31 chrX 11629829 11630118 -165344022 - AluJb SINE Alu -23 289 1 2082 121 0 34 chrX 11630138 11630461 -165343679 - AluSx SINE Alu 0 312 1 218 242 194 0 chrX 11631433 11631495 -165342645 - L3 LINE CR1 -11 1566 1493 766 308 133 33 chrX 11631529 11631958 -165342182 + L2 LINE L2 2842 3313 0 2872 163 61 94 chrX 11631990 11632892 -165341248 - MER4D LTR ERV1 -11 892 21 1311 106 0 21 chrX 11632894 11633082 -165341058 - AluSg/x SINE Alu -11 301 118 457 324 158 15 chrX 11633099 11633371 -165340769 - L3 LINE CR1 -209 1368 1058 219 36 0 0 chrX 11633661 11633689 -165340451 + (TTGTG)n Simple_repeat Simple_repeat 2 29 0 180 250 0 0 chrX 11633694 11633742 -165340398 + CT-rich Low_complexity Low_complexity 2 49 0 1162 147 35 100 chrX 11633742 11634001 -165340139 - AluJb SINE Alu -39 273 32 358 174 58 12 chrX 11634206 11634292 -165339848 - MLT1E2 LTR MaLR 0 626 537 421 226 58 70 chrX 11634535 11634680 -165339460 - L1M4 LINE L1 -3235 2911 2769 1840 147 55 3 chrX 11634680 11634973 -165339167 - AluSx SINE Alu -4 308 1 421 226 58 70 chrX 11634973 11635084 -165339056 - L1M4 LINE L1 -3377 2769 2658 2408 58 0 29 chrX 11635260 11635571 -165338569 - AluY SINE Alu -9 302 1 425 358 37 59 chrX 11635643 11635964 -165338176 - L1MEd LINE L1 -5327 792 479 1066 109 25 35 chrX 11636053 11636255 -165337885 - L1MA4 LINE L1 -1 6299 6100 1865 166 0 7 chrX 11636742 11637043 -165337097 - AluSx SINE Alu -13 299 1 2164 132 0 3 chrX 11637065 11637376 -165336764 - AluSq SINE Alu -3 310 1 2316 102 7 0 chrX 11637448 11637751 -165336389 - AluSx SINE Alu -7 305 1 460 325 158 8 chrX 11637996 11638236 -165335904 + L2 LINE L2 2997 3272 0 626 221 115 67 chrX 11638331 11638584 -165335556 - L2 LINE L2 -411 2903 2639 567 263 75 74 chrX 11638816 11639085 -165335055 - L1M4 LINE L1 -1480 4666 4399 1743 196 0 0 chrX 11639085 11639386 -165334754 - AluJb SINE Alu -11 301 1 567 263 75 74 chrX 11639386 11639640 -165334500 - L1M4 LINE L1 -1747 4399 4147 1776 158 0 38 chrX 11639640 11639956 -165334184 - AluJb SINE Alu -8 304 1 567 263 75 74 chrX 11639956 11640009 -165334131 - L1M4 LINE L1 -1999 4147 4096 1306 179 47 47 chrX 11640009 11640306 -165333834 - AluJo SINE Alu -13 299 3 567 263 75 74 chrX 11640306 11640393 -165333747 - L1M4 LINE L1 -2050 4096 4000 293 275 50 17 chrX 11640396 11640516 -165333624 - L1ME LINE L1 -504 5617 5494 2539 33 3 10 chrX 11640552 11640856 -165333284 + AluY SINE Alu 1 302 -9 5354 186 91 38 chrX 11640963 11642772 -165331368 - L1MC3 LINE L1 -1 8039 6108 22 0 0 0 chrX 11643188 11643210 -165330930 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chrX 11643455 11643495 -165330645 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 1286 107 56 0 chrX 11643495 11643673 -165330467 - AluSg/x SINE Alu -31 279 92 603 185 67 15 chrX 11643767 11643902 -165330238 + MER104 DNA Tc2 38 179 -1 2087 98 14 0 chrX 11644718 11644994 -165329146 + AluSc SINE Alu 3 282 -27 333 0 0 0 chrX 11644994 11645031 -165329109 + (CA)n Simple_repeat Simple_repeat 2 38 0 407 109 47 0 chrX 11645031 11645095 -165329045 + AluSc SINE Alu 216 282 -27 465 19 0 0 chrX 11645095 11645149 -165328991 + (CA)n Simple_repeat Simple_repeat 2 55 0 968 123 0 20 chrX 11645772 11645918 -165328222 + FLAM_C SINE Alu 1 143 0 219 36 0 0 chrX 11646046 11646074 -165328066 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2147 107 4 0 chrX 11646076 11646357 -165327783 - AluSx SINE Alu -30 282 1 1743 121 153 0 chrX 11646843 11647156 -165326984 - MER46B DNA MER2_type 0 236 1 1780 156 79 24 chrX 11647312 11647640 -165326500 + MER7A DNA MER2_type 3 346 0 35 0 0 0 chrX 11648563 11648598 -165325542 + AT_rich Low_complexity Low_complexity 1 35 0 196 180 66 0 chrX 11648907 11648968 -165325172 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 25 31 0 0 chrX 11649086 11649118 -165325022 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chrX 11650198 11650226 -165323914 + AT_rich Low_complexity Low_complexity 1 28 0 2294 107 0 0 chrX 11650327 11650627 -165323513 + AluSq SINE Alu 1 300 -13 2143 123 7 3 chrX 11650692 11651002 -165323138 - AluSx SINE Alu -1 311 1 468 289 188 15 chrX 11651614 11651811 -165322329 - MIR SINE MIR 0 262 32 339 85 0 0 chrX 11651858 11651905 -165322235 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1880 113 38 11 chrX 11651917 11652183 -165321957 - AluSx SINE Alu -39 273 1 826 106 0 18 chrX 11652456 11652569 -165321571 - FLAM_C SINE Alu -13 130 20 2004 115 10 7 chrX 11652643 11652938 -165321202 - AluSq SINE Alu -17 296 1 1947 81 11 11 chrX 11653652 11653913 -165320227 + AluSx SINE Alu 28 288 -24 21 71 0 0 chrX 11654034 11654076 -165320064 + AT_rich Low_complexity Low_complexity 1 42 0 216 373 69 10 chrX 11654140 11654242 -165319898 - L2 LINE L2 -7 3306 3199 2358 78 13 3 chrX 11654296 11654602 -165319538 - AluSc SINE Alu 0 309 1 844 205 138 0 chrX 11655063 11655258 -165318882 + MER58A DNA MER1_type 3 224 0 22 35 0 0 chrX 11655509 11655538 -165318602 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrX 11656092 11656116 -165318024 + AT_rich Low_complexity Low_complexity 1 24 0 2215 92 7 7 chrX 11656416 11656708 -165317432 + AluSx SINE Alu 2 293 -19 574 75 12 0 chrX 11656808 11656888 -165317252 - MER53 DNA DNA 0 189 109 506 157 0 0 chrX 11657064 11657153 -165316987 - MER53 DNA DNA -96 93 5 342 310 8 76 chrX 11657370 11657575 -165316565 + MLT1L LTR MaLR 279 499 -116 2368 77 0 0 chrX 11657725 11658022 -165316118 + AluSq SINE Alu 1 297 -16 2003 118 28 0 chrX 11658184 11658473 -165315667 - AluSx SINE Alu -15 297 1 806 208 104 91 chrX 11658777 11658887 -165315253 + MIR SINE MIR 29 136 -126 2156 96 0 3 chrX 11658887 11659178 -165314962 + AluSx SINE Alu 1 290 -22 806 208 104 91 chrX 11659178 11659298 -165314842 + MIR SINE MIR 136 262 0 865 171 48 64 chrX 11659711 11659898 -165314242 + MLT1F1 LTR MaLR 73 256 -311 2068 119 3 10 chrX 11659898 11660210 -165313930 + AluSx SINE Alu 1 310 -2 997 153 5 26 chrX 11660210 11660400 -165313740 + AluJo SINE Alu 117 302 -10 1903 139 32 16 chrX 11660411 11660720 -165313420 + MLT1F1 LTR MaLR 254 567 0 279 203 224 37 chrX 11660729 11660846 -165313294 - MIR SINE MIR -103 105 12 196 250 188 0 chrX 11660855 11660935 -165313205 - MIR SINE MIR -12 250 156 974 162 0 28 chrX 11660977 11661156 -165312984 - AluSg/x SINE Alu -8 302 129 243 0 0 0 chrX 11661156 11661183 -165312957 + (TG)n Simple_repeat Simple_repeat 2 28 0 339 213 0 0 chrX 11661183 11661258 -165312882 + (TA)n Simple_repeat Simple_repeat 1 75 0 258 289 0 0 chrX 11661261 11661351 -165312789 - L1MC4 LINE L1 -1339 6703 6614 241 137 20 0 chrX 11661359 11661410 -165312730 - LTR66 LTR ERVL -171 439 388 478 151 14 0 chrX 11661438 11661511 -165312629 - AluJb SINE Alu -190 122 49 2244 112 0 0 chrX 11661620 11661932 -165312208 + AluSx SINE Alu 1 312 0 26 30 0 0 chrX 11662027 11662060 -165312080 + AT_rich Low_complexity Low_complexity 1 33 0 271 221 16 10 chrX 11662206 11662302 -165311838 + L1MC4 LINE L1 7828 8011 -31 1743 225 151 52 chrX 11662802 11662857 -165311283 + MLT1G1 LTR MaLR 5 53 -542 840 113 0 30 chrX 11662857 11662990 -165311150 - FLAM_C SINE Alu -4 129 1 1743 225 151 52 chrX 11662990 11663411 -165310729 + MLT1G1 LTR MaLR 53 542 -53 2443 55 0 3 chrX 11663411 11663719 -165310421 + AluY SINE Alu 1 307 -4 1743 225 151 52 chrX 11663719 11663779 -165310361 + MLT1G1 LTR MaLR 542 595 0 21 0 0 0 chrX 11663955 11663976 -165310164 + AT_rich Low_complexity Low_complexity 1 21 0 217 306 14 28 chrX 11664011 11664083 -165310057 - L2 LINE L2 -1 3271 3201 2070 161 27 47 chrX 11664321 11664671 -165309469 - MSTD LTR MaLR 0 396 54 1557 109 130 43 chrX 11664671 11664947 -165309193 - AluJo SINE Alu -12 300 1 2070 161 27 47 chrX 11664947 11665000 -165309140 - MSTD LTR MaLR -342 54 1 2005 116 14 0 chrX 11665287 11665579 -165308561 + AluSx SINE Alu 1 296 -16 349 294 47 39 chrX 11665716 11665971 -165308169 + L1PA10 LINE L1 5669 5925 -243 * 2039 145 3 20 chrX 11665748 11666092 -165308048 + L1MB7 LINE L1 5702 6039 -145 1232 136 0 0 chrX 11666098 11666342 -165307798 - AluJb SINE Alu 0 372 129 1850 114 3 56 chrX 11666347 11666653 -165307487 - AluSx SINE Alu -22 290 1 522 124 48 29 chrX 11666653 11666758 -165307382 + L1MB7 LINE L1 6019 6125 -59 479 103 90 26 chrX 11666760 11666838 -165307302 - AluJ/FRAM SINE Alu -14 298 216 356 65 32 16 chrX 11666840 11666902 -165307238 + L1MB8 LINE L1 6110 6172 -6 239 164 213 0 chrX 11666993 11667054 -165307086 + MER5A DNA MER1_type 9 82 -107 913 150 42 31 chrX 11667274 11667467 -165306673 + L1MB7 LINE L1 5990 6184 0 1036 197 14 40 chrX 11667553 11667776 -165306364 - MER20 DNA MER1_type 0 219 3 311 290 134 18 chrX 11667812 11668036 -165306104 - L3b LINE CR1 -199 1384 1135 2033 117 17 3 chrX 11668153 11668453 -165305687 - AluSx SINE Alu -8 304 1 874 49 0 0 chrX 11668453 11668555 -165305585 - AluSq/x SINE Alu -176 136 35 233 293 101 0 chrX 11668592 11668691 -165305449 - LTR33A LTR ERVL -115 408 300 2204 49 7 25 chrX 11668825 11669150 -165304990 - AluY SINE Alu 0 320 1 258 241 117 97 chrX 11669244 11669389 -165304751 - MIR SINE MIR -13 249 102 190 338 29 0 chrX 11669390 11669458 -165304682 + L2 LINE L2 3187 3256 -57 807 123 14 36 chrX 11669546 11669684 -165304456 - AluJo SINE Alu -177 135 1 231 36 0 0 chrX 11669697 11669725 -165304415 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 278 303 0 0 chrX 11669726 11669802 -165304338 - MIR SINE MIR -173 89 14 349 227 33 73 chrX 11669865 11670015 -165304125 + L1ME4a LINE L1 5976 6119 -2 2007 107 43 13 chrX 11670056 11670355 -165303785 + AluSg SINE Alu 1 308 -2 2119 99 14 0 chrX 11670368 11670661 -165303479 + AluSx SINE Alu 6 302 -10 1479 183 35 11 chrX 11670669 11670953 -165303187 + AluJb SINE Alu 1 291 -21 1027 147 0 0 chrX 11670963 11671119 -165303021 + FRAM SINE Alu 1 153 -23 513 248 220 6 chrX 11671399 11671698 -165302442 + LTR16A LTR ERVL 16 450 0 1022 130 12 0 chrX 11672121 11672282 -165301858 - AluSg/x SINE Alu -15 297 135 2138 104 0 19 chrX 11672283 11672624 -165301516 - AluSx SINE Alu 0 312 1 518 133 0 0 chrX 11672729 11672804 -165301336 - AluJ/FLAM SINE Alu -236 76 2 295 302 12 12 chrX 11672955 11673041 -165301099 + MIR SINE MIR 48 133 -75 1752 147 52 0 chrX 11673571 11673857 -165300283 + AluJb SINE Alu 1 301 -11 3362 86 13 20 chrX 11674085 11674475 -165299665 + MLT2A2 LTR ERVL 1 389 -64 2279 92 0 3 chrX 11674475 11674781 -165299359 - AluSx SINE Alu -7 305 1 3362 86 13 20 chrX 11674781 11674846 -165299294 + MLT2A2 LTR ERVL 389 453 0 2010 104 0 14 chrX 11674987 11675299 -165298841 - AluSx SINE Alu 0 308 1 1977 174 40 19 chrX 11675299 11675311 -165298829 + MLT1B LTR MaLR 10 20 -370 1571 174 0 14 chrX 11675311 11675599 -165298541 - AluJo SINE Alu -28 284 1 1977 174 40 19 chrX 11675599 11675959 -165298181 + MLT1B LTR MaLR 20 390 0 801 102 0 0 chrX 11676045 11676153 -165297987 - AluSg/x SINE Alu -11 301 194 1904 146 0 7 chrX 11676274 11676576 -165297564 - AluSx SINE Alu -12 300 1 1243 162 76 0 chrX 11676845 11677055 -165297085 - MLT1C LTR MaLR 0 467 242 318 67 50 50 chrX 11677059 11677100 -165297040 - MSTB LTR MaLR 0 426 383 2137 122 0 0 chrX 11677100 11677412 -165296728 + AluSx SINE Alu 1 312 0 318 67 50 50 chrX 11677412 11677430 -165296710 - MSTB LTR MaLR -42 384 367 1168 241 28 4 chrX 11678427 11678676 -165295464 + MIR SINE MIR 8 262 0 2393 64 0 10 chrX 11678892 11679190 -165294950 - AluSx SINE Alu -14 298 4 1149 182 0 0 chrX 11679409 11679612 -165294528 - AluJo SINE Alu -109 203 1 1981 112 7 10 chrX 11679774 11680068 -165294072 + AluSq SINE Alu 1 293 -20 2084 118 14 0 chrX 11680307 11680604 -165293536 - AluSx SINE Alu -11 301 1 354 314 29 14 chrX 11680676 11680816 -165293324 + MER87 LTR ERV1 400 541 0 271 363 38 42 chrX 11680945 11681182 -165292958 + L2 LINE L2 2571 2806 -508 2215 99 0 0 chrX 11681463 11681766 -165292374 - AluSx SINE Alu -9 303 1 2533 126 31 87 chrX 11682268 11682362 -165291778 + MSTC LTR MaLR 1 99 -329 1845 149 33 0 chrX 11682371 11682673 -165291467 + AluJo SINE Alu 1 312 0 737 157 0 25 chrX 11682673 11682784 -165291356 - FLAM_C SINE Alu -192 110 1 2533 126 31 87 chrX 11682784 11683140 -165291000 + MSTC LTR MaLR 99 426 -2 851 127 24 0 chrX 11683144 11683270 -165290870 + FLAM_C SINE Alu 5 133 0 1970 124 0 7 chrX 11683334 11683647 -165290493 - AluSx SINE Alu 0 311 1 443 277 6 31 chrX 11683725 11683884 -165290256 - LTR33 LTR ERVL 0 521 367 309 118 0 20 chrX 11683898 11683949 -165290191 + LTR41 LTR ERVL 24 73 -700 702 130 0 0 chrX 11683949 11684049 -165290091 + HY3 scRNA scRNA 1 100 -1 183 100 0 0 chrX 11684049 11684079 -165290061 + (A)n Simple_repeat Simple_repeat 1 30 0 496 202 207 80 chrX 11684079 11684116 -165290024 + LTR41 LTR ERVL 61 92 -681 2032 105 0 37 chrX 11684116 11684401 -165289739 + AluSx SINE Alu 1 274 -38 188 33 0 33 chrX 11684401 11684431 -165289709 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2032 105 0 37 chrX 11684431 11684469 -165289671 + AluSx SINE Alu 274 312 0 496 202 207 80 chrX 11684469 11684619 -165289521 + LTR41 LTR ERVL 92 272 -501 1054 247 50 34 chrX 11684684 11685040 -165289100 + LTR41 LTR ERVL 417 795 0 296 279 81 12 chrX 11685042 11685128 -165289012 - LTR33 LTR ERVL -157 364 273 249 247 39 26 chrX 11685193 11685269 -165288871 + LTR33 LTR ERVL 3 79 -442 482 215 47 19 chrX 11685269 11685376 -165288764 + MER63 DNA MER1_type 1 736 -326 290 206 183 38 chrX 11685407 11685538 -165288602 + LTR33 LTR ERVL 88 237 -284 650 125 17 203 chrX 11685674 11685702 -165288438 - MER53 DNA DNA 0 189 157 2300 43 0 0 chrX 11685702 11686037 -165288103 + AluY SINE Alu 1 335 0 650 125 17 203 chrX 11686037 11686140 -165288000 - MER53 DNA DNA -32 157 37 1854 84 18 131 chrX 11686140 11686278 -165287862 + L1MA3 LINE L1 5967 6119 -186 2115 100 0 0 chrX 11686278 11686568 -165287572 + AluSg1 SINE Alu 1 290 -19 1854 84 18 131 chrX 11686568 11686758 -165287382 + L1MA3 LINE L1 6119 6249 -56 2327 113 48 22 chrX 11686758 11687113 -165287027 + THE1B LTR MaLR 1 364 0 1854 84 18 131 chrX 11687113 11687165 -165286975 + L1MA3 LINE L1 6249 6305 0 650 125 17 203 chrX 11687165 11687261 -165286879 - MER53 DNA DNA -152 37 1 688 158 42 0 chrX 11687288 11687408 -165286732 - FRAM SINE Alu -3 173 49 297 0 0 0 chrX 11687449 11687482 -165286658 + (TTAAA)n Simple_repeat Simple_repeat 2 34 0 1722 146 14 0 chrX 11687491 11687772 -165286368 - AluJo SINE Alu -27 285 1 1895 81 0 0 chrX 11688364 11688611 -165285529 - AluSx SINE Alu -9 303 57 180 0 0 0 chrX 11688964 11688984 -165285156 + (TTG)n Simple_repeat Simple_repeat 2 21 0 198 156 0 0 chrX 11689040 11689085 -165285055 + (GTTTG)n Simple_repeat Simple_repeat 1 45 0 370 214 90 0 chrX 11689181 11689270 -165284870 - MER5A DNA MER1_type -84 105 9 1934 118 0 14 chrX 11689546 11689862 -165284278 + AluSx SINE Alu 1 312 0 2248 79 10 3 chrX 11690339 11690643 -165283497 - AluSx SINE Alu -5 307 2 2053 94 4 0 chrX 11691006 11691283 -165282857 - AluSx SINE Alu -6 306 29 1687 139 9 59 chrX 11691286 11691610 -165282530 - AluJo SINE Alu -4 308 1 931 262 31 66 chrX 11691661 11692085 -165282055 - MLT1K LTR MaLR 0 588 180 1661 213 129 48 chrX 11692106 11692503 -165281637 + MLT1F LTR MaLR 3 446 -96 1918 133 3 13 chrX 11692503 11692668 -165281472 - AluSx SINE Alu -14 298 136 2203 84 24 0 chrX 11692668 11692964 -165281176 - AluSg SINE Alu -7 303 1 1918 133 3 13 chrX 11692964 11693099 -165281041 - AluSx SINE Alu -176 136 1 1661 213 129 48 chrX 11693099 11693175 -165280965 + MLT1F LTR MaLR 446 514 -28 1575 118 24 52 chrX 11693404 11693544 -165280596 + AluJo SINE Alu 1 143 -166 2205 111 0 0 chrX 11693544 11693851 -165280289 + AluSp SINE Alu 1 307 -6 1575 118 24 52 chrX 11693851 11694027 -165280113 + AluJo SINE Alu 143 309 0 534 251 170 0 chrX 11694072 11694259 -165279881 + MIR SINE MIR 41 259 -3 1533 196 113 60 chrX 11694275 11694439 -165279701 + MLT1D LTR MaLR 2 156 -349 2261 101 0 0 chrX 11694439 11694745 -165279395 - AluSq SINE Alu -7 306 1 1533 196 113 60 chrX 11694745 11695001 -165279139 + MLT1D LTR MaLR 156 452 -53 1612 195 0 7 chrX 11695001 11695303 -165278837 - AluJo SINE Alu -12 300 1 1533 196 113 60 chrX 11695303 11695360 -165278780 + MLT1D LTR MaLR 452 505 0 2198 87 0 40 chrX 11695371 11695693 -165278447 - AluSq SINE Alu -4 309 1 2343 81 0 0 chrX 11696068 11696366 -165277774 - AluSq SINE Alu -15 298 1 2097 106 33 0 chrX 11697746 11698048 -165276092 - AluSx SINE Alu 0 312 1 2837 162 66 27 chrX 11698053 11698515 -165275625 + L1MCa LINE L1 1924 2439 -3987 2188 114 0 3 chrX 11698515 11698823 -165275317 + AluJb SINE Alu 1 307 -5 2837 162 66 27 chrX 11698823 11699157 -165274983 + L1MCa LINE L1 2439 2759 -3667 971 180 0 22 chrX 11699184 11699367 -165274773 + AluJb SINE Alu 112 290 -22 2219 187 30 8 chrX 11699372 11699843 -165274297 + L1M4 LINE L1 4373 4853 -1293 2188 100 3 3 chrX 11699844 11700144 -165273996 - AluSx SINE Alu -12 300 1 2064 118 0 0 chrX 11700264 11700552 -165273588 + AluSx SINE Alu 16 303 -9 833 232 56 47 chrX 11700837 11701054 -165273086 - L1ME3A LINE L1 -250 5920 5697 1827 138 10 10 chrX 11701054 11701350 -165272790 - AluJo SINE Alu -14 298 3 833 232 56 47 chrX 11701350 11701472 -165272668 - L1ME3A LINE L1 -473 5697 5578 2156 115 0 10 chrX 11701528 11701833 -165272307 - AluSx SINE Alu -10 302 1 438 197 51 0 chrX 11701841 11701952 -165272188 - L1ME3A LINE L1 -559 5605 5487 420 236 94 16 chrX 11701952 11702090 -165272050 + LTR50 LTR ERVL 39 195 -578 991 157 12 0 chrX 11702221 11702393 -165271747 - FRAM SINE Alu -2 174 1 1668 151 38 3 chrX 11702399 11702691 -165271449 - AluJo SINE Alu -10 302 1 2972 113 218 2 chrX 11702981 11703283 -165270857 - MER51A LTR ERV1 -9 625 390 1794 112 63 18 chrX 11703283 11703569 -165270571 + AluSg SINE Alu 9 307 -3 2972 113 218 2 chrX 11703569 11703780 -165270360 - MER51A LTR ERV1 -244 390 1 1718 239 27 20 chrX 11703781 11704366 -165269774 - MER51A-int LTR ERV1 0 7816 6548 2007 142 0 0 chrX 11704484 11704786 -165269354 - AluSx SINE Alu -10 302 1 1018 156 23 0 chrX 11704786 11704959 -165269181 + MER51-int LTR ERV1 6831 7704 -112 277 329 15 29 chrX 11705102 11705239 -165268901 - MER51A-int LTR ERV1 -869 6336 6202 2060 101 0 7 chrX 11705239 11705537 -165268603 - AluSg SINE Alu -13 297 2 942 136 34 11 chrX 11705538 11705567 -165268573 + L1MA10 LINE L1 6146 6173 -161 2408 81 0 0 chrX 11705567 11705875 -165268265 + AluSx SINE Alu 1 308 -4 942 136 34 11 chrX 11705875 11706022 -165268118 + L1MA10 LINE L1 6173 6326 -8 297 254 90 67 chrX 11706476 11706610 -165267530 + L2 LINE L2 3126 3262 -10 2351 97 0 0 chrX 11707028 11707326 -165266814 + AluSx SINE Alu 1 298 -14 4758 213 13 55 chrX 11707359 11708331 -165265809 - MSTD-int LTR MaLR -630 1105 188 1607 136 4 38 chrX 11708331 11708595 -165265545 - AluSx SINE Alu -14 298 44 4758 213 13 55 chrX 11708595 11708775 -165265365 - MSTD-int LTR MaLR -1547 188 2 1085 192 133 31 chrX 11708777 11709032 -165265108 - MSTD LTR MaLR 0 396 116 2020 89 63 7 chrX 11709048 11709350 -165264790 - AluSc SINE Alu 0 309 2 833 158 0 29 chrX 11709355 11709494 -165264646 - FRAM SINE Alu -21 155 21 249 264 0 0 chrX 11709494 11709547 -165264593 - MSTD LTR MaLR -271 103 51 1860 172 0 3 chrX 11709548 11709845 -165264295 - AluSx SINE Alu -16 296 1 598 234 163 0 chrX 11709892 11710033 -165264107 - MER5A DNA MER1_type 0 189 26 871 194 41 36 chrX 11710063 11710259 -165263881 + MER3 DNA MER1_type 9 205 -4 2472 86 3 3 chrX 11710372 11710685 -165263455 + AluSq SINE Alu 1 313 0 2122 82 4 0 chrX 11712022 11712291 -165261849 - AluSq SINE Alu -43 270 1 907 151 0 0 chrX 11712336 11712462 -165261678 - FLAM_C SINE Alu -6 127 2 2018 157 0 3 chrX 11712728 11713041 -165261099 - AluJo SINE Alu 0 312 1 963 201 17 6 chrX 11713041 11713220 -165260920 - MER5A DNA MER1_type -8 181 1 1674 191 81 99 chrX 11713227 11713541 -165260599 + L1MC5 LINE L1 7197 7515 -446 2160 110 3 13 chrX 11713541 11713841 -165260299 + AluSx SINE Alu 1 297 -15 1674 191 81 99 chrX 11713841 11713921 -165260219 + L1MC5 LINE L1 7515 7595 -366 2262 74 0 7 chrX 11713921 11714206 -165259934 - AluSc SINE Alu -25 284 2 1674 191 81 99 chrX 11714206 11714313 -165259827 + L1MC5 LINE L1 7595 7702 -259 2033 130 88 161 chrX 11714313 11714572 -165259568 + MLT1D LTR MaLR 1 277 -228 1558 195 0 3 chrX 11714572 11714854 -165259286 + AluJo SINE Alu 1 281 -31 2033 130 88 161 chrX 11714854 11715081 -165259059 + MLT1D LTR MaLR 277 445 -60 2045 103 41 24 chrX 11715081 11715239 -165258901 - AluSx SINE Alu -15 297 130 2366 77 0 46 chrX 11715239 11715563 -165258577 - AluSx SINE Alu -3 309 1 2045 103 41 24 chrX 11715563 11715696 -165258444 - AluSx SINE Alu -182 130 1 2033 130 88 161 chrX 11715696 11715753 -165258387 + MLT1D LTR MaLR 445 505 0 1674 191 81 99 chrX 11715753 11715776 -165258364 + L1MC5 LINE L1 7702 7724 -237 2373 80 0 29 chrX 11715776 11716089 -165258051 + AluSq SINE Alu 1 304 -9 1674 191 81 99 chrX 11716089 11716237 -165257903 + L1MC5 LINE L1 7724 7860 -101 2419 155 73 0 chrX 11716800 11717199 -165256941 - MSTA LTR MaLR 0 428 1 2357 95 0 0 chrX 11717394 11717700 -165256440 - AluSq SINE Alu -5 308 3 2053 115 28 0 chrX 11717703 11717991 -165256149 - AluSp SINE Alu -17 296 1 1139 231 58 32 chrX 11718283 11718474 -165255666 + L1ME3 LINE L1 5843 6047 -115 1332 158 39 84 chrX 11718474 11718785 -165255355 - AluJo SINE Alu -15 297 1 1139 231 58 32 chrX 11718785 11718905 -165255235 + L1ME3 LINE L1 6047 6162 0 182 375 10 10 chrX 11719182 11719278 -165254862 + L2 LINE L2 2726 2821 -493 1922 139 3 3 chrX 11719296 11719584 -165254556 - AluJb SINE Alu -24 288 1 1848 110 3 73 chrX 11720333 11720633 -165253507 - AluJb SINE Alu -17 295 17 240 287 139 41 chrX 11720820 11720942 -165253198 + L2 LINE L2 3137 3270 -2 2394 86 0 0 chrX 11721764 11722067 -165252073 - AluSq SINE Alu -10 303 1 251 291 13 25 chrX 11722467 11722546 -165251594 - L2 LINE L2 0 3272 3195 386 211 84 78 chrX 11722757 11722899 -165251241 + MIR SINE MIR 120 262 0 2658 46 0 3 chrX 11723373 11723680 -165250460 - AluSp SINE Alu -7 306 1 2264 76 0 3 chrX 11723707 11723995 -165250145 + AluY SINE Alu 1 287 -24 31 0 0 0 chrX 11725292 11725323 -165248817 + GC_rich Low_complexity Low_complexity 1 31 0 2111 122 0 3 chrX 11728762 11729058 -165245082 - AluSx SINE Alu -17 295 1 1039 147 13 0 chrX 11729292 11729449 -165244691 - AluSg/x SINE Alu -20 290 132 2250 115 0 10 chrX 11729449 11729754 -165244386 - AluSx SINE Alu -10 302 1 1826 113 16 68 chrX 11729754 11730064 -165244076 - AluSx SINE Alu -18 294 1 2220 113 0 19 chrX 11730225 11730536 -165243604 - AluSx SINE Alu -7 305 1 21 0 0 0 chrX 11731167 11731188 -165242952 + AT_rich Low_complexity Low_complexity 1 21 0 1855 127 99 0 chrX 11732292 11732575 -165241565 - AluSx SINE Alu -1 311 1 2244 117 0 0 chrX 11732583 11732882 -165241258 - AluSq SINE Alu -14 299 1 1646 124 3 150 chrX 11733976 11734330 -165239810 + AluJb SINE Alu 1 302 0 1930 144 7 3 chrX 11734359 11734644 -165239496 + AluJb SINE Alu 7 292 -20 357 268 71 39 chrX 11734713 11734840 -165239300 - L2 LINE L2 -1 3271 3141 392 215 59 129 chrX 11734917 11735103 -165239037 + MIR SINE MIR 77 249 -13 2224 143 60 17 chrX 11735234 11735583 -165238557 - THE1B LTR MaLR 0 364 1 34 19 0 19 chrX 11735840 11735866 -165238274 + AT_rich Low_complexity Low_complexity 1 26 -25 978 118 0 0 chrX 11735866 11735993 -165238147 - FLAM_C SINE Alu -6 127 1 34 19 0 19 chrX 11735993 11736018 -165238122 + AT_rich Low_complexity Low_complexity 26 51 0 828 125 0 23 chrX 11736059 11736226 -165237914 - FLAM_C SINE Alu 0 180 17 2233 97 3 6 chrX 11736254 11736565 -165237575 - AluSg SINE Alu 0 310 1 231 170 0 0 chrX 11736890 11736937 -165237203 + A-rich Low_complexity Low_complexity 1 47 0 2353 94 0 0 chrX 11737318 11737615 -165236525 - AluSx SINE Alu -15 297 1 23 0 0 0 chrX 11738442 11738465 -165235675 + AT_rich Low_complexity Low_complexity 1 23 0 2361 100 0 0 chrX 11739218 11739517 -165234623 - AluSx SINE Alu -13 299 1 1668 164 25 4 chrX 11739631 11739912 -165234228 - AluJb SINE Alu -25 287 1 295 279 78 39 chrX 11740058 11740237 -165233903 + L1ME4a LINE L1 5936 6121 0 1557 174 3 40 chrX 11740296 11740618 -165233522 - AluJo SINE Alu -2 310 1 2146 129 0 19 chrX 11741096 11741414 -165232726 - AluJb SINE Alu 0 312 1 813 132 78 42 chrX 11741414 11741574 -165232566 - L1MA7 LINE L1 -242 6049 5881 2256 117 0 0 chrX 11741574 11741883 -165232257 - AluSx SINE Alu -3 309 1 3071 221 30 28 chrX 11741883 11742708 -165231432 - L1MCa LINE L1 -3105 3321 2495 2225 92 0 14 chrX 11742711 11743005 -165231135 - AluSx SINE Alu -2 310 21 1282 155 56 0 chrX 11743013 11743265 -165230875 - L1MCa LINE L1 -3998 2428 2163 2398 78 0 3 chrX 11743282 11743590 -165230550 - AluY SINE Alu -4 307 1 2347 73 14 0 chrX 11743591 11743879 -165230261 - AluSc SINE Alu -14 295 4 1555 209 50 24 chrX 11743887 11744308 -165229832 - L1M4 LINE L1 -1231 4915 4484 2106 146 0 0 chrX 11744522 11744823 -165229317 - AluJb SINE Alu -11 301 1 686 129 0 0 chrX 11745021 11745114 -165229026 - AluJ/FLAM SINE Alu -218 94 2 187 304 185 22 chrX 11745268 11745403 -165228737 + L2 LINE L2 3116 3272 0 954 178 0 72 chrX 11745611 11745819 -165228321 - L1MB7 LINE L1 -19 6165 5973 369 281 141 7 chrX 11746119 11746254 -165227886 - MIR3 SINE MIR -6 202 50 239 186 0 124 chrX 11746627 11746724 -165227416 - L1MC5 LINE L1 -639 7322 7238 2013 147 0 13 chrX 11746737 11747051 -165227089 - AluJb SINE Alu -2 310 1 23 0 0 0 chrX 11747051 11747074 -165227066 + AT_rich Low_complexity Low_complexity 1 23 0 1552 189 0 15 chrX 11747088 11747352 -165226788 - AluJo SINE Alu -52 260 1 398 237 79 72 chrX 11747362 11747514 -165226626 - L1MC5 LINE L1 -722 7239 7087 2544 197 54 82 chrX 11747657 11748559 -165225581 + L1MC5 LINE L1 6891 7767 -194 2330 96 3 3 chrX 11748755 11749067 -165225073 - AluSx SINE Alu 0 312 1 589 249 34 67 chrX 11749069 11749278 -165224862 - L2 LINE L2 0 3313 3112 734 272 19 47 chrX 11749831 11749947 -165224193 + MIR SINE MIR 13 131 -131 2205 129 0 0 chrX 11749947 11750249 -165223891 - AluSx SINE Alu -10 302 1 734 272 19 47 chrX 11750249 11750389 -165223751 + MIR SINE MIR 131 262 0 1513 124 8 53 chrX 11750855 11751121 -165223019 - L1MB8 LINE L1 -5 6173 5920 452 211 0 11 chrX 11751206 11751296 -165222844 + L2 LINE L2 3188 3276 -37 232 211 14 84 chrX 11751283 11751354 -165222786 - L2 LINE L2 -39 3233 3168 * 1793 161 3 7 chrX 11751371 11751656 -165222484 - AluJo SINE Alu -28 284 1 2072 91 23 19 chrX 11752647 11752956 -165221184 - AluSq SINE Alu -3 310 1 612 266 65 15 chrX 11753142 11753341 -165220799 - MIR SINE MIR -26 236 28 2251 104 17 3 chrX 11753344 11753643 -165220497 - AluSx SINE Alu -9 303 1 213 229 21 0 chrX 11753819 11753867 -165220273 + (CATA)n Simple_repeat Simple_repeat 4 52 0 955 249 5 5 chrX 11753870 11754071 -165220069 - MER63A DNA MER1_type -2 208 8 269 305 107 42 chrX 11755427 11755748 -165218392 - L2 LINE L2 -293 2979 2641 2423 62 3 0 chrX 11757142 11757433 -165216707 - AluSq SINE Alu -21 292 1 695 242 65 26 chrX 11757958 11758189 -165215951 - L1ME3A LINE L1 -9 6161 5922 189 0 0 0 chrX 11758425 11758446 -165215694 + (T)n Simple_repeat Simple_repeat 1 21 0 384 268 32 114 chrX 11758893 11759113 -165215027 - L1MC4 LINE L1 -15 8027 7826 834 55 18 0 chrX 11759832 11759942 -165214198 - MLT1B LTR MaLR 0 390 279 1075 181 56 38 chrX 11760084 11760350 -165213790 - MLT1B LTR MaLR -119 271 1 2034 122 36 15 chrX 11760351 11760423 -165213717 - MLT1B LTR MaLR -46 344 275 1638 107 21 9 chrX 11760423 11760656 -165213484 - AluSg/x SINE Alu -4 308 73 * 1889 125 57 0 chrX 11760655 11760936 -165213204 - AluSx SINE Alu -15 297 1 2034 122 36 15 chrX 11760936 11761200 -165212940 - MLT1B LTR MaLR -395 4294967291 1 23 33 0 0 chrX 11762015 11762045 -165212095 + AT_rich Low_complexity Low_complexity 1 30 0 2745 13 0 7 chrX 11762185 11762494 -165211646 - AluY SINE Alu -4 307 1 302 310 129 52 chrX 11762542 11762829 -165211311 - L1ME3A LINE L1 -199 5922 5614 1411 108 5 0 chrX 11762837 11763023 -165211117 - AluSx SINE Alu -125 187 1 740 162 0 66 chrX 11763099 11763235 -165210905 - FRAM SINE Alu -13 163 37 209 256 0 0 chrX 11763238 11763277 -165210863 + L2 LINE L2 3225 3263 -50 219 167 0 0 chrX 11763368 11763410 -165210730 + (CATA)n Simple_repeat Simple_repeat 4 45 0 516 278 54 0 chrX 11763850 11764016 -165210124 - MIR SINE MIR -8 254 75 180 0 0 0 chrX 11764076 11764096 -165210044 + (CAA)n Simple_repeat Simple_repeat 2 21 0 362 130 0 200 chrX 11764303 11764418 -165209722 - Tigger7 DNA MER2_type -1 2486 2395 * 839 134 0 7 chrX 11764411 11764553 -165209587 - Tigger7 DNA MER2_type -208 525 385 452 319 156 52 chrX 11765518 11766232 -165207908 + L2 LINE L2 1694 2481 -833 1776 169 164 93 chrX 11766316 11767012 -165207128 + LTR1B LTR ERV1 1 745 -81 298 350 96 17 chrX 11767116 11767356 -165206784 + L2 LINE L2 2589 2847 -467 2755 114 74 22 chrX 11767394 11767976 -165206164 + MER4B LTR ERV1 1 779 0 388 355 40 26 chrX 11768216 11768368 -165205772 + L2 LINE L2 3116 3269 -3 1173 171 25 42 chrX 11768568 11768713 -165205427 + L1MB5 LINE L1 5440 5581 -593 2055 117 17 0 chrX 11768713 11769012 -165205128 + AluSx SINE Alu 1 304 -8 1173 171 25 42 chrX 11769012 11769106 -165205034 + L1MB5 LINE L1 5581 5675 -499 247 22 0 87 chrX 11769180 11769226 -165204914 + (CATA)n Simple_repeat Simple_repeat 4 45 0 2739 157 17 13 chrX 11769228 11769706 -165204434 + L1MB5 LINE L1 5695 6174 0 2105 136 0 3 chrX 11769765 11770067 -165204073 - AluJb SINE Alu -11 301 1 445 280 51 57 chrX 11770133 11770290 -165203850 - MIR SINE MIR -87 175 20 883 294 23 55 chrX 11770525 11770581 -165203559 + L1PA16 LINE L1 789 845 -6729 1918 146 31 7 chrX 11770581 11770875 -165203265 + AluJb SINE Alu 1 301 -11 883 294 23 55 chrX 11770875 11771257 -165202883 + L1PA16 LINE L1 845 1213 -6361 13994 206 27 14 chrX 11771919 11774126 -165200014 + L1PA16 LINE L1 2259 4435 -3169 2231 113 0 0 chrX 11774126 11774427 -165199713 + AluSx SINE Alu 1 301 -11 13994 206 27 14 chrX 11774427 11774538 -165199602 + L1PA16 LINE L1 4435 4543 -3061 2373 90 3 0 chrX 11774538 11774839 -165199301 + AluSp SINE Alu 1 302 -11 13994 206 27 14 chrX 11774839 11775052 -165199088 + L1PA16 LINE L1 4543 4752 -2852 2006 160 0 0 chrX 11775052 11775345 -165198795 + AluJb SINE Alu 1 293 -19 13994 206 27 14 chrX 11775345 11777455 -165196685 + L1PA16 LINE L1 4752 6988 -616 2332 84 7 3 chrX 11777455 11777754 -165196386 + AluSp SINE Alu 1 300 -13 13994 206 27 14 chrX 11777754 11778371 -165195769 + L1PA16 LINE L1 6988 7595 -9 23 33 0 0 chrX 11778721 11778751 -165195389 + AT_rich Low_complexity Low_complexity 1 30 0 29 47 0 0 chrX 11783383 11783426 -165190714 + AT_rich Low_complexity Low_complexity 1 43 0 331 279 81 25 chrX 11784667 11784828 -165189312 + L1ME4a LINE L1 5255 5424 -2384 548 283 140 22 chrX 11784849 11785249 -165188891 + L1ME4a LINE L1 5462 5908 -213 396 287 54 73 chrX 11785362 11785679 -165188461 - L1MC4a LINE L1 -1749 6059 5749 485 329 46 18 chrX 11786396 11786788 -165187352 + L1MEc LINE L1 1410 1812 -4584 7737 182 34 115 chrX 11786863 11789252 -165184888 + L1M1 LINE L1 -413 1783 -4644 * 9719 132 29 57 chrX 11789250 11790404 -165183736 + L1M1 LINE L1 3571 4756 -1827 1749 172 44 0 chrX 11790404 11790508 -165183632 + AluJb SINE Alu 3 101 -211 209 57 29 0 chrX 11790508 11790543 -165183597 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1749 172 44 0 chrX 11790543 11790735 -165183405 + AluJb SINE Alu 101 312 0 9719 132 29 57 chrX 11790735 11791271 -165182869 + L1M1 LINE L1 4756 5306 -1277 1569 108 138 11 chrX 11791271 11791540 -165182600 + AluSg1 SINE Alu 1 303 -6 9719 132 29 57 chrX 11791540 11791928 -165182212 + L1M1 LINE L1 5306 5704 -879 2187 100 0 17 chrX 11791928 11792227 -165181913 + AluY SINE Alu 1 294 -17 9719 132 29 57 chrX 11792227 11792431 -165181709 + L1M1 LINE L1 5704 5792 -791 1703 181 3 23 chrX 11792431 11792735 -165181405 - AluJo SINE Alu -14 298 1 9719 132 29 57 chrX 11792735 11792813 -165181327 + L1M1 LINE L1 5792 5871 -712 2192 122 0 0 chrX 11792814 11793109 -165181031 + AluJb SINE Alu 1 295 -17 2275 124 0 0 chrX 11793205 11793511 -165180629 + AluSx SINE Alu 1 306 -6 1771 182 100 80 chrX 11793571 11793812 -165180328 + L1M2 LINE L1 1449 1684 -4742 2222 128 0 0 chrX 11793812 11794124 -165180016 + AluSx SINE Alu 1 312 0 1771 182 100 80 chrX 11794124 11794186 -165179954 + L1M2 LINE L1 1684 1743 -4683 1719 184 0 17 chrX 11794186 11794480 -165179660 + AluJb SINE Alu 1 289 -23 1771 182 100 80 chrX 11794480 11794772 -165179368 + L1M2 LINE L1 1743 2815 -3611 189 107 0 0 chrX 11794829 11794857 -165179283 + (T)n Simple_repeat Simple_repeat 1 28 0 205 342 112 25 chrX 11794948 11795144 -165178996 + L2 LINE L2 1937 2149 -1165 224 250 36 36 chrX 11795163 11795247 -165178893 + MER5A DNA MER1_type 77 160 -29 267 350 10 21 chrX 11795452 11795549 -165178591 + L2 LINE L2 2225 2320 -994 1083 262 118 38 chrX 11795561 11796034 -165178106 - MLT1J LTR MaLR 0 511 1 247 250 0 0 chrX 11796327 11796379 -165177761 + L2 LINE L2 3183 3234 -79 1232 121 0 0 chrX 11796731 11796905 -165177235 - AluSq SINE Alu -8 305 132 405 207 141 16 chrX 11798153 11798274 -165175866 - L2 LINE L2 -1 3312 3177 21 0 0 0 chrX 11798450 11798471 -165175669 + AT_rich Low_complexity Low_complexity 1 21 0 360 227 73 27 chrX 11798834 11798944 -165175196 - MER5B DNA MER1_type -62 116 2 215 200 25 0 chrX 11799003 11799043 -165175097 - MIR SINE MIR -193 69 29 855 140 0 21 chrX 11799522 11799665 -165174475 - FLAM_C SINE Alu -3 140 1 1789 138 0 34 chrX 11799704 11799995 -165174145 + AluJb SINE Alu 14 294 -18 2002 134 7 10 chrX 11800390 11800522 -165173618 + AluJb SINE Alu 1 132 -180 2214 102 3 0 chrX 11800522 11800806 -165173334 + AluSg SINE Alu 13 297 -13 2002 134 7 10 chrX 11800806 11800979 -165173161 + AluJb SINE Alu 132 305 -7 484 99 0 44 chrX 11800980 11801071 -165173069 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 1442 128 204 15 chrX 11801071 11801524 -165172616 + L1MA4 LINE L1 5192 5769 -534 * 5123 99 19 34 chrX 11801512 11801623 -165172517 + L1PA15 LINE L1 5334 5445 -720 2021 120 31 3 chrX 11801623 11801915 -165172225 + AluSx SINE Alu 1 300 -12 5123 99 19 34 chrX 11801915 11802648 -165171492 + L1PA15 LINE L1 5445 6165 0 835 69 69 0 chrX 11802650 11802781 -165171359 + L1MA4 LINE L1 5743 5882 -418 2512 69 7 0 chrX 11802957 11803262 -165170878 - AluSx SINE Alu -5 307 1 278 50 17 50 chrX 11803262 11803322 -165170818 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 721 150 0 33 chrX 11803326 11803446 -165170694 - FLAM_A SINE Alu -17 116 1 507 285 184 17 chrX 11803525 11803813 -165170327 + L2 LINE L2 2922 3257 -56 2873 230 114 36 chrX 11803908 11804477 -165169663 - L2 LINE L2 0 3313 2790 2152 129 0 3 chrX 11804477 11804788 -165169352 - AluSq SINE Alu -3 310 1 2873 230 114 36 chrX 11804788 11804963 -165169177 - L2 LINE L2 -523 2790 2630 1289 179 78 87 chrX 11804963 11805310 -165168830 + MER2 DNA MER2_type 1 344 0 2873 230 114 36 chrX 11805310 11805616 -165168524 - L2 LINE L2 -683 2630 2171 286 171 224 0 chrX 11805624 11805669 -165168471 - MER20 DNA MER1_type -1 218 184 420 71 0 0 chrX 11805669 11805725 -165168415 + (TG)n Simple_repeat Simple_repeat 2 57 0 286 171 224 0 chrX 11805725 11805755 -165168385 - MER20 DNA MER1_type -35 184 126 2745 68 11 0 chrX 11805893 11806244 -165167896 + THE1A LTR MaLR 1 355 0 202 27 0 54 chrX 11806540 11806577 -165167563 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 516 165 0 82 chrX 11806581 11806678 -165167462 - AluJb SINE Alu -34 278 190 200 202 32 128 chrX 11806851 11806945 -165167195 - MIR SINE MIR -4 258 174 * 538 329 96 31 chrX 11806903 11807289 -165166851 + L2 LINE L2 1961 2371 -943 221 318 142 67 chrX 11807325 11807503 -165166637 - L2 LINE L2 -1 3271 3065 2150 122 0 31 chrX 11807503 11807824 -165166316 + AluSx SINE Alu 1 311 -1 221 318 142 67 chrX 11807824 11807912 -165166228 - L2 LINE L2 -207 3065 2985 344 314 144 38 chrX 11808023 11808224 -165165916 - L2 LINE L2 -500 2814 2583 1363 197 122 55 chrX 11808224 11808641 -165165499 + MER65A LTR ERV1 1 445 0 344 314 144 38 chrX 11808641 11808675 -165165465 - L2 LINE L2 -731 2583 2554 389 250 54 108 chrX 11808770 11808803 -165165337 + L1MB2 LINE L1 5296 5329 -2479 2147 113 0 0 chrX 11808803 11809103 -165165037 + AluSx SINE Alu 1 300 -12 389 250 54 108 chrX 11809103 11809329 -165164811 + L1MB2 LINE L1 5329 5541 -2267 1699 137 47 34 chrX 11809343 11809702 -165164438 + Charlie3 DNA MER1_type 1 2712 0 639 167 125 0 chrX 11809780 11809900 -165164240 - AluJo SINE Alu -176 136 2 1890 102 0 66 chrX 11810055 11810359 -165163781 + AluSx SINE Alu 5 288 -24 2827 108 38 17 chrX 11810378 11810795 -165163345 + MSTB LTR MaLR 1 426 0 1909 148 0 3 chrX 11810795 11811093 -165163047 - AluJo SINE Alu -15 297 1 1088 221 81 68 chrX 11811097 11811179 -165162961 + HAL1 LINE L1 1499 1578 -929 2088 124 0 0 chrX 11811179 11811477 -165162663 - AluSx SINE Alu -14 298 1 1088 221 81 68 chrX 11811477 11811778 -165162362 + HAL1 LINE L1 1578 1887 -620 1473 255 175 19 chrX 11811858 11812560 -165161580 + HAL1 LINE L1 1690 2501 -6 1931 138 0 25 chrX 11813341 11813697 -165160443 + AluJo SINE Alu 1 348 0 1953 116 27 0 chrX 11815066 11815359 -165158781 + AluSx SINE Alu 1 301 -11 25 31 0 0 chrX 11815489 11815521 -165158619 + AT_rich Low_complexity Low_complexity 1 32 0 2269 91 3 0 chrX 11815883 11816179 -165157961 + AluSq SINE Alu 1 297 -16 1620 134 67 16 chrX 11816361 11816675 -165157465 + L1MB2 LINE L1 5842 6171 0 2016 123 34 0 chrX 11816848 11817140 -165157000 - AluSx SINE Alu -10 302 1 240 242 61 61 chrX 11817203 11817302 -165156838 + L3 LINE CR1 1364 1462 -115 250 228 35 0 chrX 11819290 11819347 -165154793 - L2 LINE L2 -10 3262 3204 337 297 61 68 chrX 11823359 11823465 -165150675 - MIR SINE MIR 0 262 156 3100 134 125 10 chrX 11823465 11824048 -165150092 + MER39B LTR ERV1 3 652 -1 337 297 61 68 chrX 11824048 11824089 -165150051 - MIR SINE MIR -106 156 116 563 206 63 0 chrX 11824332 11824458 -165149682 - MIR3 SINE MIR -13 195 62 248 217 159 0 chrX 11826463 11826532 -165147608 + L1ME4a LINE L1 5975 6054 -67 2141 118 0 0 chrX 11826634 11826930 -165147210 + AluSx SINE Alu 1 296 -16 251 328 67 0 chrX 11827152 11827271 -165146869 + L2 LINE L2 3132 3258 -14 524 212 151 7 chrX 11827317 11827463 -165146677 + MER91A DNA MER1_type 30 196 0 2111 101 0 42 chrX 11829411 11829718 -165144422 - AluSx SINE Alu -18 294 1 1025 113 27 7 chrX 11830457 11830607 -165143533 + L1MA4A LINE L1 5800 5952 -351 276 321 64 0 chrX 11831030 11831139 -165143001 + L2 LINE L2 3196 3311 -2 511 346 137 14 chrX 11831147 11831705 -165142435 - L2 LINE L2 -10 3262 2616 1224 230 113 56 chrX 11831823 11832333 -165141807 + MLT1G1 LTR MaLR 23 595 0 1693 148 20 27 chrX 11832949 11833246 -165140894 - AluJo SINE Alu -17 295 1 2431 62 0 0 chrX 11833256 11833561 -165140579 - AluY SINE Alu -6 305 1 296 180 22 67 chrX 11834596 11834685 -165139455 + LTR33A LTR ERVL 439 523 0 324 294 209 21 chrX 11836121 11836308 -165137832 - MIR SINE MIR -37 225 4 1755 158 0 16 chrX 11836331 11836634 -165137506 + AluJo SINE Alu 3 300 -12 212 229 16 66 chrX 11836865 11836926 -165137214 + L2 LINE L2 3205 3262 -10 917 135 0 0 chrX 11837411 11837544 -165136596 - FLAM_C SINE Alu 0 133 1 201 39 0 0 chrX 11837681 11837707 -165136433 + (TG)n Simple_repeat Simple_repeat 1 26 0 391 262 12 0 chrX 11837945 11838029 -165136111 + Charlie8 DNA MER1_type 9 93 -2324 2111 102 14 0 chrX 11839408 11839692 -165134448 - AluSx SINE Alu -24 288 1 1031 187 13 40 chrX 11840279 11840504 -165133636 - MER20 DNA MER1_type 0 219 1 1017 206 23 23 chrX 11840514 11840732 -165133408 + MER58A DNA MER1_type 3 220 -4 3643 104 9 2 chrX 11841083 11841648 -165132492 + L1PB1 LINE L1 5608 6176 0 1979 114 0 0 chrX 11841656 11841973 -165132167 + AluSx SINE Alu 1 317 0 225 211 0 0 chrX 11842463 11842515 -165131625 + GA-rich Low_complexity Low_complexity 3 54 0 230 258 215 12 chrX 11842978 11843141 -165130999 + L1ME4a LINE L1 5690 5885 -236 249 197 0 28 chrX 11843239 11843310 -165130830 + L1ME4a LINE L1 6047 6115 -6 200 291 254 5 chrX 11843726 11843939 -165130201 + L3 LINE CR1 1111 1376 -201 1036 202 71 79 chrX 11844115 11844488 -165129652 + MLT1A1 LTR MaLR 1 426 0 186 209 0 0 chrX 11845031 11845074 -165129066 + GA-rich Low_complexity Low_complexity 2 44 0 1361 156 90 35 chrX 11845528 11845816 -165128324 + AluJo SINE Alu 1 304 -8 234 213 180 0 chrX 11846203 11846264 -165127876 + MIR3 SINE MIR 129 200 -8 706 309 99 22 chrX 11846668 11847082 -165127058 - MARNA DNA Mariner -132 454 9 2177 92 3 0 chrX 11847169 11847464 -165126676 + AluSx SINE Alu 1 296 -16 636 268 22 22 chrX 11847953 11848132 -165126008 + MIR3 SINE MIR 15 193 -15 377 320 22 39 chrX 11848266 11848444 -165125696 + MIR3 SINE MIR 16 190 -18 2369 168 37 14 chrX 11848492 11848980 -165125160 + L1MB8 LINE L1 5676 6174 -4 2146 115 0 0 chrX 11849506 11849802 -165124338 + AluSx SINE Alu 1 296 -16 2138 115 0 3 chrX 11850364 11850668 -165123472 - AluSq SINE Alu -10 303 1 198 0 0 0 chrX 11851203 11851225 -165122915 + (TA)n Simple_repeat Simple_repeat 1 22 0 25 31 0 0 chrX 11851249 11851281 -165122859 + AT_rich Low_complexity Low_complexity 1 32 0 2204 103 0 0 chrX 11851324 11851624 -165122516 - AluSq SINE Alu -13 300 1 294 295 33 0 chrX 11851653 11851775 -165122365 - L1ME4a LINE L1 -202 5919 5794 229 214 0 0 chrX 11851880 11851922 -165122218 - L1ME4a LINE L1 -459 5662 5621 264 246 0 91 chrX 11851983 11852093 -165122047 - L1ME4a LINE L1 -673 5489 5390 213 39 0 0 chrX 11852169 11852195 -165121945 + (TG)n Simple_repeat Simple_repeat 1 26 0 2004 122 0 0 chrX 11852195 11852474 -165121666 - AluSx SINE Alu -33 279 1 741 220 129 35 chrX 11852537 11852769 -165121371 + MIR SINE MIR 9 262 0 635 301 0 0 chrX 11853616 11853779 -165120361 - MLT1I LTR MaLR -24 385 223 2483 126 38 43 chrX 11853791 11854212 -165119928 - MSTA LTR MaLR -9 419 1 683 255 54 0 chrX 11854312 11854496 -165119644 + L1M4 LINE L1 4778 4971 -1175 420 227 0 0 chrX 11854497 11854572 -165119568 - L1ME4a LINE L1 -1566 4580 4506 214 253 242 11 chrX 11854601 11854696 -165119444 + L2 LINE L2 3197 3313 0 2227 96 0 7 chrX 11854842 11855145 -165118995 + AluSg SINE Alu 1 301 -9 379 267 176 16 chrX 11856292 11856479 -165117661 - MIR SINE MIR -8 254 38 204 319 43 21 chrX 11856629 11856723 -165117417 + L2 LINE L2 2996 3091 -181 1149 259 25 6 chrX 11856733 11857054 -165117086 + MER46C DNA MER2_type 6 332 -6 2088 116 0 3 chrX 11857055 11857366 -165116774 + AluSx SINE Alu 1 310 -2 197 259 17 35 chrX 11857838 11857896 -165116244 + MIR SINE MIR 105 161 -101 205 132 53 0 chrX 11858640 11858678 -165115462 + G-rich Low_complexity Low_complexity 5 44 0 222 254 0 14 chrX 11859167 11859238 -165114902 + C-rich Low_complexity Low_complexity 5 74 0 731 270 49 26 chrX 11859941 11860167 -165113973 + MIR SINE MIR 19 249 -13 262 270 0 40 chrX 11860291 11860365 -165113775 + L2 LINE L2 3243 3313 0 28 29 0 0 chrX 11861694 11861729 -165112411 + AT_rich Low_complexity Low_complexity 1 35 0 2263 116 0 0 chrX 11861816 11862127 -165112013 + AluSx SINE Alu 1 311 -1 676 168 0 16 chrX 11862413 11862538 -165111602 - FLAM_A SINE Alu -7 135 13 192 40 0 0 chrX 11862638 11862663 -165111477 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1597 177 3 3 chrX 11863430 11863712 -165110428 - AluJo SINE Alu -30 282 1 598 271 147 12 chrX 11864551 11864721 -165109419 + MER91A DNA MER1_type 4 196 0 321 246 271 0 chrX 11916744 11916866 -165057274 - MIR3 SINE MIR -6 202 48 600 261 97 62 chrX 11917898 11918250 -165055890 + L2 LINE L2 2947 3310 -3 235 341 12 0 chrX 11918655 11918740 -165055400 - L2 LINE L2 -36 3277 3192 1290 274 26 38 chrX 11919238 11919690 -165054450 - MLT1J2 LTR MaLR -3 447 1 536 219 0 9 chrX 11921769 11921883 -165052257 + MER3 DNA MER1_type 57 122 -87 1741 183 24 5 chrX 11921891 11922262 -165051878 + MER3 DNA MER1_type 2234 2611 0 1739 159 19 0 chrX 11923125 11923395 -165050745 + AluJb SINE Alu 1 275 -37 312 300 22 0 chrX 11923401 11923491 -165050649 - L1MC4 LINE L1 -1339 6703 6612 * 338 221 0 53 chrX 11923415 11923510 -165050630 + L1MC4 LINE L1 6614 6703 -1339 236 133 0 0 chrX 11923541 11923586 -165050554 - LTR66 LTR ERVL -171 439 395 * 242 111 0 0 chrX 11923548 11923593 -165050547 + LTR66 LTR ERVL 395 439 -171 1836 112 0 0 chrX 11925340 11925582 -165048558 - AluSq SINE Alu -71 242 1 477 277 29 0 chrX 11926021 11926158 -165047982 + MIR SINE MIR 114 254 -8 417 299 82 31 chrX 11929210 11929404 -165044736 + L2 LINE L2 2892 3095 -177 2041 136 13 0 chrX 11930458 11930766 -165043374 + AluJo SINE Alu 1 312 0 936 173 23 51 chrX 11930843 11931057 -165043083 - MER3 DNA MER1_type 0 209 2 291 303 50 17 chrX 11931263 11931382 -165042758 + L2 LINE L2 3189 3311 -2 923 204 31 26 chrX 11931594 11931820 -165042320 + MIR SINE MIR 33 259 -3 488 255 38 25 chrX 11934241 11934398 -165039742 - MER103 DNA DNA 0 166 8 360 0 0 0 chrX 11934404 11934444 -165039696 + (TG)n Simple_repeat Simple_repeat 1 40 0 31 44 0 0 chrX 11934607 11934652 -165039488 + AT_rich Low_complexity Low_complexity 1 45 0 1799 177 6 22 chrX 11935527 11935838 -165038302 + AluJo SINE Alu 1 306 -6 285 111 0 0 chrX 11935844 11935889 -165038251 + L1MA7 LINE L1 6243 6287 -4 231 103 0 0 chrX 11936437 11936476 -165037664 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 185 271 118 0 chrX 11936752 11936837 -165037303 + MIR SINE MIR 79 173 -89 303 313 9 18 chrX 11937828 11937940 -165036200 + CT-rich Low_complexity Low_complexity 3 113 0 324 64 0 0 chrX 11938354 11938401 -165035739 + (TC)n Simple_repeat Simple_repeat 1 47 0 358 285 16 16 chrX 11938672 11938795 -165035345 - MER5A DNA MER1_type -4 185 63 22 80 0 0 chrX 11939014 11939064 -165035076 + AT_rich Low_complexity Low_complexity 1 50 0 733 152 80 7 chrX 11939070 11939221 -165034919 + L1MC3 LINE L1 7618 7779 -6 2094 247 98 9 chrX 11939256 11939892 -165034248 + L1ME3A LINE L1 5453 6144 -26 693 306 42 4 chrX 11939953 11940193 -165033947 + MIR SINE MIR 6 252 -10 2548 55 0 19 chrX 11941247 11941555 -165032585 + AluY SINE Alu 1 302 -9 865 191 155 58 chrX 11941595 11941976 -165032164 + MLT1J1 LTR MaLR 11 450 0 1364 236 88 24 chrX 11943578 11943989 -165030151 + LTR16A1 LTR ERVL 1 437 -20 209 98 24 0 chrX 11944378 11944419 -165029721 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 445 281 50 25 chrX 11944478 11944638 -165029502 + MIR SINE MIR 82 245 -17 273 210 0 0 chrX 11944782 11944844 -165029296 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 449 297 87 31 chrX 11945346 11945575 -165028565 - MIR SINE MIR -20 242 1 253 256 62 31 chrX 11945717 11945846 -165028294 - L1MC5 LINE L1 -52 7909 7777 243 0 0 0 chrX 11946634 11946661 -165027479 + (CA)n Simple_repeat Simple_repeat 2 28 0 1273 298 62 24 chrX 11947971 11948589 -165025551 - L1ME4a LINE L1 -24 6097 5457 5893 82 4 31 chrX 11948661 11949506 -165024634 + L1PB1 LINE L1 5329 6150 -1 542 302 55 8 chrX 11949563 11949798 -165024342 - MIR SINE MIR -15 247 2 277 208 20 119 chrX 11949934 11950035 -165024105 - MIR3 SINE MIR -30 178 88 184 311 0 40 chrX 11950163 11950237 -165023903 + L2 LINE L2 3014 3084 -188 228 180 11 124 chrX 11950347 11950436 -165023704 + MLT1J2 LTR MaLR 57 135 -315 512 246 30 22 chrX 11950479 11950613 -165023527 + MLT1L LTR MaLR 317 451 -164 321 293 40 0 chrX 11952509 11952608 -165021532 - MIR SINE MIR -126 136 34 321 26 0 0 chrX 11952903 11952941 -165021199 + (TTA)n Simple_repeat Simple_repeat 2 39 0 584 161 18 0 chrX 11953364 11953476 -165020664 - MIR SINE MIR -72 190 77 828 138 0 0 chrX 11953551 11953667 -165020473 + FLAM_C SINE Alu 3 118 -25 400 255 174 0 chrX 11955359 11955520 -165018620 + L2 LINE L2 3115 3303 -10 398 291 8 0 chrX 11955865 11955982 -165018158 - MIR SINE MIR -110 152 35 611 203 68 82 chrX 11958142 11958349 -165015791 + L2 LINE L2 3109 3312 -1 723 210 185 17 chrX 11958559 11958797 -165015343 - LTR16C LTR ERVL 0 491 214 203 125 25 0 chrX 11959183 11959223 -165014917 + GA-rich Low_complexity Low_complexity 2 42 0 237 139 0 0 chrX 11959694 11959737 -165014403 + (CA)n Simple_repeat Simple_repeat 2 44 0 307 183 0 33 chrX 11959829 11959889 -165014251 - MIR SINE MIR -1 261 204 720 293 30 10 chrX 11960075 11960273 -165013867 - MIR SINE MIR -46 216 15 263 140 70 53 chrX 11960629 11960686 -165013454 + L2 LINE L2 3215 3272 0 672 297 87 58 chrX 11962903 11963644 -165010496 - L2 LINE L2 -10 3303 2544 325 176 118 0 chrX 11963746 11963814 -165010326 + MIR SINE MIR 106 181 -81 37717 92 8 11 chrX 11963840 11970024 -165004116 + L1PA6 LINE L1 11 6173 0 194 274 164 0 chrX 11970227 11970300 -165003840 - MIR SINE MIR -1 261 177 346 241 17 35 chrX 11970817 11970991 -165003149 + CT-rich Low_complexity Low_complexity 2 172 0 239 275 11 55 chrX 11971997 11972088 -165002052 + MIR3 SINE MIR 109 195 -13 180 111 0 0 chrX 11972089 11972116 -165002024 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 336 321 9 0 chrX 11972125 11972234 -165001906 - L2 LINE L2 -19 3253 3144 1962 114 10 13 chrX 11972398 11972696 -165001444 + AluJb SINE Alu 10 306 -6 1416 209 71 77 chrX 11973201 11973679 -165000461 - MLT1H LTR MaLR -2 547 73 24 0 0 0 chrX 11973679 11973703 -165000437 + AT_rich Low_complexity Low_complexity 1 24 0 288 205 13 51 chrX 11973922 11974000 -165000140 + MER116 DNA Mariner 6 80 0 1192 192 19 0 chrX 11974238 11974446 -164999694 + MER20 DNA MER1_type 1 212 -7 236 195 0 0 chrX 11975345 11975386 -164998754 - L2 LINE L2 -11 3261 3221 226 250 0 0 chrX 11975849 11975921 -164998219 - L1ME2 LINE L1 0 6164 6093 1519 255 60 13 chrX 11976095 11976562 -164997578 + LTR16C LTR ERVL 1 489 -2 414 0 0 0 chrX 11977051 11977097 -164997043 + (TG)n Simple_repeat Simple_repeat 1 46 0 207 0 0 0 chrX 11978256 11978279 -164995861 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1134 278 76 11 chrX 11978664 11979046 -164995094 - LTR16C LTR ERVL -9 482 76 238 188 0 0 chrX 11979717 11979765 -164994375 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 479 281 61 57 chrX 11979938 11980166 -164993974 - MIR SINE MIR -15 247 19 1894 223 60 91 chrX 11980545 11981147 -164992993 + MLT1E LTR MaLR 11 593 0 198 0 0 0 chrX 11981323 11981345 -164992795 + (TA)n Simple_repeat Simple_repeat 2 23 0 312 303 61 20 chrX 11981372 11981471 -164992669 - LTR16C LTR ERVL -239 252 150 387 0 0 0 chrX 11981519 11981562 -164992578 + (CA)n Simple_repeat Simple_repeat 2 44 0 316 305 161 17 chrX 11981572 11981671 -164992469 - L1ME2 LINE L1 -207 5963 5880 210 37 0 0 chrX 11981671 11981698 -164992442 + (TA)n Simple_repeat Simple_repeat 2 28 0 316 305 161 17 chrX 11981698 11981772 -164992368 - L1ME2 LINE L1 -290 5880 5765 428 184 0 0 chrX 11981800 11981876 -164992264 + MER116 DNA Mariner 5 80 0 605 312 98 9 chrX 11981969 11982184 -164991956 + MIR SINE MIR 26 259 -3 838 231 16 0 chrX 11983122 11983308 -164990832 + MER5A DNA MER1_type 1 189 0 1664 69 0 5 chrX 11983605 11983822 -164990318 + L1PA7 LINE L1 5939 6154 0 548 183 0 0 chrX 11985592 11985685 -164988455 + MER81 DNA DNA 20 112 -2 492 212 189 8 chrX 11985754 11985886 -164988254 - MER5A DNA MER1_type 0 189 34 388 281 99 57 chrX 11986122 11986385 -164987755 + MLT1J LTR MaLR 238 511 0 308 239 284 9 chrX 11986424 11986533 -164987607 - MER91C DNA MER1_type -1 139 1 539 283 152 5 chrX 11986546 11986737 -164987403 + MIR SINE MIR 31 249 -13 1352 238 112 20 chrX 11987367 11988030 -164986110 - L2 LINE L2 -1 3312 2585 183 80 0 0 chrX 11989512 11989537 -164984603 + (T)n Simple_repeat Simple_repeat 1 25 0 348 331 40 11 chrX 11989945 11990120 -164984020 + (CATG)n Simple_repeat Simple_repeat 1 180 0 602 190 110 116 chrX 11990571 11990955 -164983185 + MLT1H LTR MaLR 108 555 0 313 291 13 0 chrX 11991208 11991287 -164982853 - MIR3 SINE MIR -34 174 95 213 152 0 0 chrX 11991423 11991456 -164982684 + L2 LINE L2 3223 3255 -17 403 250 93 9 chrX 11992026 11992134 -164982006 + L2 LINE L2 3156 3272 0 1228 250 187 13 chrX 11992242 11992817 -164981323 + LTR50 LTR ERVL 5 521 -2 225 208 62 0 chrX 11993020 11993068 -164981072 + L2 LINE L2 3263 3313 0 652 254 161 30 chrX 11993094 11993443 -164980697 + MLT1J1 LTR MaLR 45 407 -2 2017 109 0 3 chrX 11993860 11994144 -164979996 + AluSx SINE Alu 3 285 -27 207 0 0 0 chrX 11994147 11994170 -164979970 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 256 225 109 29 chrX 11994173 11994311 -164979829 - L1ME4a LINE L1 -6 6115 5967 756 291 57 24 chrX 11994351 11994598 -164979542 + MIR SINE MIR 8 262 0 690 226 138 0 chrX 11995469 11995628 -164978512 + MER5A DNA MER1_type 9 189 0 656 306 48 5 chrX 11995694 11995900 -164978240 - MIR SINE MIR -1 261 47 225 0 0 0 chrX 11995956 11995981 -164978159 + (TC)n Simple_repeat Simple_repeat 2 26 0 437 203 149 27 chrX 11996704 11996852 -164977288 - LTR16A1 LTR ERVL -113 344 179 432 0 0 0 chrX 11996855 11996903 -164977237 + (TG)n Simple_repeat Simple_repeat 2 49 0 804 296 51 14 chrX 11997378 11997578 -164976562 + MIR SINE MIR 29 239 -23 1754 166 27 0 chrX 11997578 11997873 -164976267 - AluJb SINE Alu -9 303 1 804 296 51 14 chrX 11997873 11997888 -164976252 + MIR SINE MIR 239 252 -10 196 311 49 0 chrX 11998523 11998584 -164975556 - MIR SINE MIR -68 140 77 636 290 178 30 chrX 11998593 11998931 -164975209 - MLT1I LTR MaLR -2 407 20 1347 261 42 61 chrX 11999138 11999718 -164974422 - L2 LINE L2 -2 3311 2748 933 280 127 6 chrX 12000035 12000396 -164973744 + LTR16C LTR ERVL 87 491 0 282 291 23 0 chrX 12000409 12000495 -164973645 + MIR3 SINE MIR 95 182 -26 2272 61 0 0 chrX 12002278 12002597 -164971543 - AluY SINE Alu 0 319 1 1744 164 0 20 chrX 12002788 12003087 -164971053 + AluJo SINE Alu 1 293 -19 393 262 77 18 chrX 12003219 12003387 -164970753 + MER20B DNA MER1_type 2 179 -604 1440 265 75 5 chrX 12003492 12003892 -164970248 - LTR16C LTR ERVL -61 430 3 234 0 0 0 chrX 12004547 12004573 -164969567 + (CA)n Simple_repeat Simple_repeat 1 26 0 385 374 33 6 chrX 12004768 12004950 -164969190 - MIR SINE MIR -28 234 48 1805 141 14 17 chrX 12005085 12005382 -164968758 + AluJo SINE Alu 1 296 -16 636 284 54 0 chrX 12005666 12005870 -164968270 - MIR SINE MIR -1 261 47 260 253 96 24 chrX 12006270 12006353 -164967787 + L2 LINE L2 3167 3255 -17 312 298 221 43 chrX 12006592 12007012 -164967128 - L2 LINE L2 -5 3308 2814 228 203 0 62 chrX 12007630 12007694 -164966446 + MER5A DNA MER1_type 1 60 -129 790 181 10 98 chrX 12007696 12007889 -164966251 + AluJo SINE Alu 123 298 -14 570 285 0 15 chrX 12007893 12008023 -164966117 + MER5A DNA MER1_type 62 189 0 619 184 135 0 chrX 12008031 12008192 -164965948 - MER5A DNA MER1_type 0 189 4 290 196 39 20 chrX 12009586 12009688 -164964452 + GA-rich Low_complexity Low_complexity 3 106 0 993 159 55 28 chrX 12010391 12010573 -164963567 - MER20 DNA MER1_type -17 202 16 274 169 78 26 chrX 12011804 12011881 -164962259 - MIR SINE MIR 0 262 182 1654 251 88 22 chrX 12012018 12012509 -164961631 + MLT1H LTR MaLR 12 534 -15 238 253 22 11 chrX 12012520 12012611 -164961529 + MER103 DNA DNA 75 166 0 327 113 0 0 chrX 12013010 12013063 -164961077 + (A)n Simple_repeat Simple_repeat 1 53 0 2726 210 94 36 chrX 12013720 12014566 -164959574 + L1MC4 LINE L1 7106 8042 0 22 0 0 0 chrX 12016158 12016180 -164957960 + GC_rich Low_complexity Low_complexity 1 22 0 1930 152 0 3 chrX 12017007 12017303 -164956837 + AluJb SINE Alu 1 295 -17 439 196 20 10 chrX 12017701 12017803 -164956337 - MER5A DNA MER1_type -80 109 7 216 67 0 0 chrX 12018824 12018854 -164955286 + (ATG)n Simple_repeat Simple_repeat 1 30 0 427 272 127 38 chrX 12019593 12019806 -164954334 - MIR SINE MIR -16 246 15 667 199 2 2 chrX 12019824 12019956 -164954184 + MER5B DNA MER1_type 58 178 0 1234 244 52 10 chrX 12020391 12020699 -164953441 + MLT1I LTR MaLR 89 409 0 449 220 18 18 chrX 12021277 12021386 -164952754 - MER5B DNA MER1_type -62 116 8 203 233 0 23 chrX 12021430 12021473 -164952667 - MIR SINE MIR -115 93 52 204 125 0 0 chrX 12021864 12021896 -164952244 + (TG)n Simple_repeat Simple_repeat 1 32 0 408 40 0 0 chrX 12022063 12022113 -164952027 + (TG)n Simple_repeat Simple_repeat 2 51 0 1401 186 25 31 chrX 12022381 12022699 -164951441 + MER33 DNA MER1_type 2 317 -7 741 199 144 15 chrX 12022800 12023001 -164951139 + MIR SINE MIR 35 261 -1 382 111 259 12 chrX 12023893 12023974 -164950166 - MER20 DNA MER1_type 0 219 119 2030 151 55 56 chrX 12023974 12024460 -164949680 - MLT2A2 LTR ERVL 0 554 62 2288 119 51 20 chrX 12024460 12024813 -164949327 + THE1B LTR MaLR 1 364 0 2030 151 55 56 chrX 12024813 12024875 -164949265 - MLT2A2 LTR ERVL -492 62 1 599 187 45 15 chrX 12024875 12024994 -164949146 - MER20 DNA MER1_type -96 123 1 672 265 5 41 chrX 12025002 12025198 -164948942 - MER5A DNA MER1_type 0 189 1 1188 190 53 34 chrX 12026523 12026786 -164947354 - LTR16C LTR ERVL -55 436 169 336 281 21 3 chrX 12027032 12027162 -164946978 + MER5A DNA MER1_type 1 143 -46 528 199 37 42 chrX 12028894 12029076 -164945064 + MIR SINE MIR 12 191 -62 1407 113 0 0 chrX 12029143 12029329 -164944811 + AluSq SINE Alu 1 186 -127 229 182 18 18 chrX 12030726 12030781 -164943359 + (TAA)n Simple_repeat Simple_repeat 3 57 0 458 235 125 0 chrX 12030821 12030957 -164943183 - MIR SINE MIR -52 210 58 441 167 0 0 chrX 12030974 12031052 -164943088 + L2 LINE L2 3221 3298 -15 396 250 0 0 chrX 12031286 12031382 -164942758 + MIR SINE MIR 67 162 -100 570 296 108 38 chrX 12031419 12031763 -164942377 + MLT1J LTR MaLR 34 401 -110 250 330 0 9 chrX 12031828 12031934 -164942206 + MIR SINE MIR 157 261 -1 680 244 28 22 chrX 12032580 12032760 -164941380 + MER5A DNA MER1_type 2 182 -7 851 239 33 16 chrX 12032789 12033169 -164940971 - LTR16A1 LTR ERVL 0 457 2 278 143 0 0 chrX 12033300 12033342 -164940798 - 5S rRNA rRNA -79 42 1 939 244 0 0 chrX 12034661 12034858 -164939282 - MIR SINE MIR -10 252 56 771 197 7 0 chrX 12037410 12037557 -164936583 + MER3 DNA MER1_type 41 188 -21 * 1758 136 12 81 chrX 12037536 12037955 -164936185 + MER3 DNA MER1_type 2235 2624 0 1911 165 83 70 chrX 12038167 12038683 -164935457 + Charlie1b DNA MER1_type 1 523 0 1838 228 66 0 chrX 12038833 12039271 -164934869 + L1ME3A LINE L1 5704 6170 0 379 165 37 73 chrX 12040163 12040272 -164933868 - MLT1J1 LTR MaLR -341 105 1 1705 162 0 36 chrX 12040341 12040643 -164933497 + AluJo SINE Alu 1 291 -21 22 0 0 0 chrX 12040643 12040665 -164933475 + AT_rich Low_complexity Low_complexity 1 22 0 288 148 16 16 chrX 12041743 12041804 -164932336 - MER5A DNA MER1_type -103 86 26 521 86 11 43 chrX 12043621 12043714 -164930426 + MER5B DNA MER1_type 72 161 -17 24 32 0 0 chrX 12045018 12045049 -164929091 + AT_rich Low_complexity Low_complexity 1 31 0 447 306 111 17 chrX 12045181 12045416 -164928724 + MIR SINE MIR 2 258 -4 186 286 74 89 chrX 12045866 12045971 -164928169 - L2 LINE L2 -12 3260 3155 1724 142 36 127 chrX 12045971 12046442 -164927698 - MSTC LTR MaLR 0 428 1 186 286 74 89 chrX 12046442 12046605 -164927535 - L2 LINE L2 -117 3155 2996 216 0 0 0 chrX 12047754 12047778 -164926362 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 195 100 0 0 chrX 12048406 12048436 -164925704 + (A)n Simple_repeat Simple_repeat 1 30 0 216 0 0 0 chrX 12048589 12048613 -164925527 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2108 94 0 11 chrX 12048613 12048889 -164925251 - AluSc SINE Alu -36 273 1 241 293 30 0 chrX 12048927 12049026 -164925114 + MIR SINE MIR 161 262 0 523 271 18 30 chrX 12049745 12049911 -164924229 - MIR SINE MIR -78 184 21 222 37 0 0 chrX 12049920 12049947 -164924193 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 207 316 102 58 chrX 12050960 12051166 -164922974 + L2 LINE L2 2869 3083 -189 21 0 0 0 chrX 12051826 12051847 -164922293 + AT_rich Low_complexity Low_complexity 1 21 0 273 57 0 0 chrX 12052568 12052603 -164921537 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1707 155 36 11 chrX 12052606 12052883 -164921257 - AluJo SINE Alu -26 286 3 192 125 31 0 chrX 12054000 12054032 -164920108 + MER5B DNA MER1_type 146 178 0 1192 236 125 34 chrX 12054730 12055192 -164918948 - MLT1H LTR MaLR -1 548 4 698 266 27 5 chrX 12055397 12055585 -164918555 + MIR SINE MIR 1 192 -70 21 0 0 0 chrX 12056218 12056239 -164917901 + AT_rich Low_complexity Low_complexity 1 21 0 214 298 95 0 chrX 12056997 12057081 -164917059 - MIR3 SINE MIR -5 203 112 1084 176 70 18 chrX 12058210 12058437 -164915703 - MLT1J2 LTR MaLR -205 245 7 1266 214 0 0 chrX 12058599 12058823 -164915317 + MER58A DNA MER1_type 1 224 0 3977 118 22 5 chrX 12058899 12059525 -164914615 + L1MA5 LINE L1 5658 6294 -6 262 216 182 34 chrX 12059591 12059679 -164914461 + L2 LINE L2 3192 3292 -21 560 232 55 76 chrX 12059807 12060044 -164914096 - MIR SINE MIR -6 256 25 231 114 0 0 chrX 12060047 12060082 -164914058 + (T)n Simple_repeat Simple_repeat 1 35 0 463 214 45 0 chrX 12060470 12060582 -164913558 - MER5A DNA MER1_type -39 150 34 29 60 0 0 chrX 12062809 12062859 -164911281 + GC_rich Low_complexity Low_complexity 1 50 0 313 258 22 11 chrX 12065547 12065636 -164908504 - MLT1J2 LTR MaLR -2 448 359 607 174 95 2 chrX 12065662 12065871 -164908269 - MLT1J2 LTR MaLR -147 303 53 212 321 24 12 chrX 12066124 12066208 -164907932 - MIR SINE MIR -107 101 17 1063 221 9 0 chrX 12066383 12066605 -164907535 - MIR SINE MIR -36 226 3 369 241 107 70 chrX 12067044 12067490 -164906650 - MLT1G1 LTR MaLR -8 587 39 1648 56 0 14 chrX 12067898 12068113 -164906027 - L1PA8 LINE L1 -1 6171 5960 1501 237 23 6 chrX 12068410 12068760 -164905380 + LTR16A LTR ERVL 82 437 -13 4235 194 73 50 chrX 12069873 12071962 -164902178 - L1ME2 LINE L1 0 6164 4026 2585 24 7 3 chrX 12071962 12072255 -164901885 - AluY SINE Alu -2 309 16 4235 194 73 50 chrX 12072255 12072288 -164901852 - L1ME2 LINE L1 -2138 4026 3995 1068 250 53 3 chrX 12072275 12072575 -164901565 - L1ME2 LINE L1 -2466 3680 3366 * 344 122 0 40 chrX 12073247 12073321 -164900819 + (TGAA)n Simple_repeat Simple_repeat 1 71 0 345 238 2 33 chrX 12073339 12073452 -164900688 - MLT1I LTR MaLR 0 450 318 576 251 37 25 chrX 12073454 12073617 -164900523 - MLT1J2 LTR MaLR -219 231 67 1724 172 3 31 chrX 12074614 12074905 -164899235 + AluJb SINE Alu 1 283 -29 665 291 29 0 chrX 12075085 12075295 -164898845 + L2 LINE L2 2843 3058 -255 1271 195 29 0 chrX 12075295 12075541 -164898599 - LTR16C LTR ERVL 0 491 239 422 282 204 19 chrX 12075714 12075930 -164898210 + L2 LINE L2 3056 3311 -2 247 312 118 0 chrX 12078186 12078279 -164895861 - L2 LINE L2 0 3272 3169 1371 239 86 18 chrX 12078766 12079163 -164894977 - MLT1J2 LTR MaLR -6 444 21 484 303 13 42 chrX 12079334 12079572 -164894568 + L2 LINE L2 3083 3313 0 549 0 0 0 chrX 12079821 12079882 -164894258 + (CA)n Simple_repeat Simple_repeat 2 62 0 243 342 148 10 chrX 12080061 12080263 -164893877 + MIR SINE MIR 20 249 -13 334 169 39 0 chrX 12080384 12080461 -164893679 + MER116 DNA Mariner 1 80 0 525 81 14 0 chrX 12081061 12081135 -164893005 + MER116 DNA Mariner 5 79 -1 926 321 35 12 chrX 12081919 12082262 -164891878 + L1MC4a LINE L1 6450 6800 -1008 300 173 67 0 chrX 12083517 12083592 -164890548 - MER116 DNA Mariner 0 80 1 745 209 63 0 chrX 12083615 12083773 -164890367 + MER5A DNA MER1_type 16 183 -6 330 241 146 89 chrX 12084328 12084459 -164889681 + L1ME4a LINE L1 5728 5850 -271 1451 167 33 0 chrX 12084459 12084622 -164889518 - AluJb SINE Alu -20 292 117 234 0 0 0 chrX 12084622 12084648 -164889492 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1451 167 33 0 chrX 12084648 12084724 -164889416 - AluJb SINE Alu -195 117 45 330 241 146 89 chrX 12084724 12084907 -164889233 + L1ME4a LINE L1 5850 6060 -61 219 36 0 0 chrX 12084910 12084938 -164889202 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 237 33 0 0 chrX 12084937 12084967 -164889173 + (GA)n Simple_repeat Simple_repeat 1 30 0 2549 128 47 2 chrX 12084967 12085374 -164888766 - MSTA LTR MaLR -3 425 1 207 255 51 61 chrX 12085497 12085595 -164888545 + L2 LINE L2 3171 3267 -5 299 307 95 15 chrX 12086925 12087062 -164887078 + MIR3 SINE MIR 12 159 -49 746 207 36 131 chrX 12087062 12087264 -164886876 + MER112 DNA MER1_type 1 172 -88 371 71 36 0 chrX 12087264 12087320 -164886820 - L1PA7 LINE L1 0 6154 6097 746 207 36 131 chrX 12087320 12087392 -164886748 + MER112 DNA MER1_type 172 249 -11 410 242 67 8 chrX 12088199 12088319 -164885821 - MIR3 SINE MIR -38 170 44 434 310 44 35 chrX 12090086 12090315 -164883825 + MIR SINE MIR 11 241 -21 2815 82 3 14 chrX 12090537 12090905 -164883235 + THE1B LTR MaLR 1 364 0 2094 191 87 16 chrX 12090918 12091077 -164883063 - MLT1E1 LTR MaLR -2 652 506 222 37 0 0 chrX 12091077 12091104 -164883036 + (CATCT)n Simple_repeat Simple_repeat 4 30 0 2094 191 87 16 chrX 12091104 12091484 -164882656 - MLT1E1 LTR MaLR -148 506 1 288 268 12 12 chrX 12092550 12092632 -164881508 + L2 LINE L2 3193 3274 -39 303 340 41 3 chrX 12092760 12092896 -164881244 - MER5A DNA MER1_type -2 176 33 1166 182 43 16 chrX 12094600 12094858 -164879282 - MER20B DNA MER1_type -5 778 514 593 239 221 26 chrX 12094930 12095202 -164878938 - MER20B DNA MER1_type -458 325 1 309 324 15 22 chrX 12095206 12095342 -164878798 - MIR3 SINE MIR -53 155 21 290 328 41 16 chrX 12096224 12096346 -164877794 + L2 LINE L2 3147 3271 -1 225 352 106 21 chrX 12097273 12097415 -164876725 - L2 LINE L2 -97 3175 3022 21 36 0 0 chrX 12097553 12097581 -164876559 + AT_rich Low_complexity Low_complexity 1 28 0 303 255 27 27 chrX 12098461 12098589 -164875551 + MER63 DNA MER1_type 709 1060 0 201 94 0 0 chrX 12098674 12098706 -164875434 + (TTG)n Simple_repeat Simple_repeat 2 33 0 766 236 25 20 chrX 12099381 12099580 -164874560 + MIR SINE MIR 53 252 -10 614 248 178 5 chrX 12101209 12101423 -164872717 + MIR SINE MIR 12 262 0 450 303 45 0 chrX 12101490 12101622 -164872518 + MIR SINE MIR 52 189 -73 1027 241 114 50 chrX 12101759 12102199 -164871941 + L1ME4a LINE L1 5514 5981 -140 559 214 0 0 chrX 12102207 12102296 -164871844 + MER119 DNA MER1_type 1 89 -494 444 312 115 15 chrX 12104093 12104433 -164869707 + HAL1b LINE L1 481 854 -494 1352 289 49 29 chrX 12104851 12105550 -164868590 + L1MC4a LINE L1 3243 3955 -2191 186 133 0 0 chrX 12105567 12105597 -164868543 + (TA)n Simple_repeat Simple_repeat 2 31 0 2031 259 94 37 chrX 12105607 12106158 -164867982 + L1MC4a LINE L1 4370 4888 -1258 905 199 147 5 chrX 12106158 12106349 -164867791 - MER20 DNA MER1_type 0 219 2 2031 259 94 37 chrX 12106349 12106824 -164867316 + L1MC4a LINE L1 4888 5334 -812 2211 89 10 7 chrX 12106824 12107115 -164867025 + AluJb SINE Alu 21 312 0 2031 259 94 37 chrX 12107115 12107560 -164866580 + L1MC4a LINE L1 5334 5325 -821 2065 158 12 0 chrX 12107560 12107902 -164866238 + MER7A DNA MER2_type 2 345 -1 2031 259 94 37 chrX 12107902 12107946 -164866194 + L1MC4a LINE L1 5324 5364 -782 192 40 0 0 chrX 12108083 12108108 -164866032 + (CA)n Simple_repeat Simple_repeat 2 26 0 1396 153 51 45 chrX 12108633 12108966 -164865174 + L1MC4a LINE L1 5983 6317 -1491 1967 109 11 18 chrX 12109060 12109344 -164864796 + AluSx SINE Alu 17 298 -14 1753 147 0 87 chrX 12109630 12109963 -164864177 + AluJb SINE Alu 1 304 -8 195 100 0 0 chrX 12109985 12110015 -164864125 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1169 109 0 29 chrX 12110779 12110949 -164863191 + FRAM SINE Alu 5 170 -2 2245 89 7 14 chrX 12110949 12111241 -164862899 - AluY SINE Alu -21 290 1 2200 191 80 14 chrX 12112336 12112563 -164861577 + L1MC4a LINE L1 7273 7484 -324 1539 166 22 26 chrX 12112563 12112861 -164861279 + AluJo SINE Alu 14 310 0 2200 191 80 14 chrX 12112861 12113134 -164861006 + L1MC4a LINE L1 7484 7807 -1 315 0 0 0 chrX 12113134 12113169 -164860971 + (CA)n Simple_repeat Simple_repeat 2 36 0 372 242 30 10 chrX 12113516 12113615 -164860525 - MER117 DNA MER1_type -8 189 89 237 321 45 36 chrX 12115477 12115589 -164858551 - L2 LINE L2 -490 2824 2712 857 232 75 31 chrX 12115707 12115961 -164858179 + ERVL LTR ERVL 2365 2629 -3135 1453 227 176 58 chrX 12116141 12116850 -164857290 - LTR50 LTR ERVL -2 793 1 1562 193 64 9 chrX 12117070 12117397 -164856743 + L1MD2 LINE L1 5788 6132 -227 23 0 0 0 chrX 12118144 12118167 -164855973 + AT_rich Low_complexity Low_complexity 1 23 0 1492 170 147 93 chrX 12118373 12118890 -164855250 - L1ME3 LINE L1 -254 5908 5364 225 67 0 0 chrX 12118890 12118935 -164855205 + LTR66 LTR ERVL 394 438 -172 225 67 0 0 chrX 12118897 12118942 -164855198 - LTR66 LTR ERVL -172 438 394 297 0 0 0 chrX 12119005 12119038 -164855102 + (CA)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chrX 12119037 12119057 -164855083 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 275 340 49 15 chrX 12121058 12121261 -164852879 - L1MEd LINE L1 -5314 805 596 4050 95 7 13 chrX 12121676 12122232 -164851908 - L1PB2 LINE L1 -6 6145 5593 1598 78 5 0 chrX 12122237 12122441 -164851699 - L1PA13 LINE L1 -3 6160 5956 2346 105 3 0 chrX 12123606 12123910 -164850230 - AluSx SINE Alu -7 305 1 915 212 59 18 chrX 12124250 12124420 -164849720 - MER45A DNA AcHobo -1 177 1 21 0 0 0 chrX 12124516 12124537 -164849603 + AT_rich Low_complexity Low_complexity 1 21 0 1046 219 21 17 chrX 12124707 12124945 -164849195 - MIR SINE MIR -21 241 3 974 168 11 14 chrX 12124965 12125394 -164848746 + GA-rich Low_complexity Low_complexity 1 428 0 1010 102 17 6 chrX 12125399 12125576 -164848564 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 926 130 20 17 chrX 12125579 12125879 -164848261 + GA-rich Low_complexity Low_complexity 1 301 0 336 138 0 0 chrX 12126576 12126641 -164847499 + (TC)n Simple_repeat Simple_repeat 2 66 0 411 73 0 0 chrX 12130370 12130425 -164843715 + (TG)n Simple_repeat Simple_repeat 1 55 0 252 0 0 0 chrX 12135193 12135221 -164838919 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 726 54 0 0 chrX 12135849 12135942 -164838198 + L1PB1 LINE L1 6058 6150 -1 294 89 71 0 chrX 12135945 12136001 -164838139 + L1MA7 LINE L1 6232 6291 0 362 280 98 8 chrX 12136863 12136995 -164837145 + MIR SINE MIR 4 147 -115 204 125 0 0 chrX 12137371 12137403 -164836737 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 596 247 7 7 chrX 12137630 12137780 -164836360 - L1MC5 LINE L1 -76 7885 7736 2489 80 0 10 chrX 12137868 12138181 -164835959 - AluSx SINE Alu -2 310 1 283 336 96 0 chrX 12138301 12138405 -164835735 + L2 LINE L2 3141 3254 -18 204 111 0 0 chrX 12141150 12141186 -164832954 + (TG)n Simple_repeat Simple_repeat 2 37 0 1801 70 4 0 chrX 12142759 12142986 -164831154 + AluSq SINE Alu 82 309 -4 686 261 152 0 chrX 12143248 12143432 -164830708 - MIR SINE MIR -28 234 23 237 33 0 0 chrX 12144062 12144092 -164830048 + (C)n Simple_repeat Simple_repeat 1 30 0 2362 107 0 0 chrX 12146210 12146518 -164827622 + AluSx SINE Alu 1 308 -4 512 307 92 5 chrX 12146684 12146902 -164827238 - MIR SINE MIR -6 256 20 811 238 70 23 chrX 12147042 12147256 -164826884 - MIR SINE MIR -21 241 18 186 336 94 16 chrX 12147391 12147519 -164826621 - L2 LINE L2 -228 3044 2907 235 188 21 0 chrX 12147678 12147726 -164826414 - MER58 DNA MER1_type -5 2415 2367 1528 123 156 62 chrX 12147732 12148040 -164826100 - MER1B DNA MER1_type -2 337 1 284 284 10 10 chrX 12148045 12148147 -164825993 - L2 LINE L2 -448 2866 2765 500 200 8 67 chrX 12148213 12148259 -164825881 + MIR SINE MIR 63 110 -152 1386 71 77 0 chrX 12148259 12148298 -164825842 - MER107 DNA MER1_type 0 197 162 182 36 0 36 chrX 12148298 12148326 -164825814 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1386 71 77 0 chrX 12148326 12148468 -164825672 - MER107 DNA MER1_type -35 162 2 500 200 8 67 chrX 12148468 12148541 -164825599 + MIR SINE MIR 110 175 -87 21 36 0 0 chrX 12148591 12148619 -164825521 + AT_rich Low_complexity Low_complexity 1 28 0 344 125 0 100 chrX 12148898 12148978 -164825162 + L1MC3 LINE L1 7616 7687 -98 483 281 114 6 chrX 12149291 12149458 -164824682 + L1MC/D LINE L1 5627 5811 -1997 866 198 35 10 chrX 12149498 12149695 -164824445 - L1ME3A LINE L1 -201 5969 5768 199 200 0 0 chrX 12150213 12150248 -164823892 - L3 LINE CR1 -13 1564 1530 695 290 0 5 chrX 12150982 12151168 -164822972 - L1ME3A LINE L1 -436 5728 5544 25 31 0 0 chrX 12152555 12152587 -164821553 + AT_rich Low_complexity Low_complexity 1 32 0 342 279 42 91 chrX 12154029 12154337 -164819803 + L2 LINE L2 2817 3109 -163 529 254 53 18 chrX 12154448 12154617 -164819523 - MIR SINE MIR -79 183 9 907 204 39 6 chrX 12154626 12154807 -164819333 - MER5A DNA MER1_type -2 187 1 210 301 57 49 chrX 12154846 12154889 -164819251 + L2 LINE L2 3175 3216 -97 1693 142 0 8 chrX 12154889 12155149 -164818991 - AluJb SINE Alu -54 258 1 210 301 57 49 chrX 12155149 12155228 -164818912 + L2 LINE L2 3216 3298 -15 294 29 0 0 chrX 12155231 12155266 -164818874 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 322 295 16 8 chrX 12157173 12157295 -164816845 - MIR SINE MIR 0 262 140 22 0 0 0 chrX 12159216 12159238 -164814902 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 12161589 12161610 -164812530 + AT_rich Low_complexity Low_complexity 1 21 0 293 261 123 14 chrX 12163441 12163579 -164810561 + Charlie7 DNA MER1_type 11 163 -2449 574 214 60 59 chrX 12164151 12164179 -164809961 + Charlie7 DNA MER1_type 346 372 -2240 598 232 61 0 chrX 12164179 12164343 -164809797 - MER104 DNA MER2_type -2 178 5 574 214 60 59 chrX 12164343 12164600 -164809540 + Charlie7 DNA MER1_type 372 719 -1893 1151 233 39 52 chrX 12164624 12165066 -164809074 + L1MC5 LINE L1 7478 7913 -48 1033 238 60 39 chrX 12165070 12165456 -164808684 + Charlie7 DNA MER1_type 717 1110 -1502 1865 102 8 0 chrX 12165916 12166171 -164807969 + AluSx SINE Alu 1 257 -55 705 229 49 7 chrX 12166180 12166436 -164807704 - MLT1J2 LTR MaLR -109 341 1 269 227 0 15 chrX 12167067 12167133 -164807007 + L2 LINE L2 3159 3223 -90 317 230 0 23 chrX 12167595 12167682 -164806458 + HsTC2 DNA Tc2 2 86 -1812 331 286 11 111 chrX 12167962 12168224 -164805916 - L2 LINE L2 -44 3228 2993 900 186 30 74 chrX 12168477 12168537 -164805603 - MLT1F1 LTR MaLR -13 554 493 189 0 0 0 chrX 12168537 12168558 -164805582 + (TC)n Simple_repeat Simple_repeat 2 22 0 2130 92 0 20 chrX 12168558 12168850 -164805290 - AluSx SINE Alu -26 286 1 900 186 30 74 chrX 12168850 12169019 -164805121 - MLT1F1 LTR MaLR -72 495 334 554 243 66 7 chrX 12169334 12169486 -164804654 - MLT1F1 LTR MaLR -381 161 1 633 304 123 28 chrX 12169486 12169580 -164804560 + L1ME4a LINE L1 5380 5464 -657 2076 118 0 3 chrX 12169580 12169886 -164804254 + L1PA16 LINE L1 5858 6162 -4 633 304 123 28 chrX 12169886 12170261 -164803879 + L1ME4a LINE L1 5464 5894 -227 630 178 9 0 chrX 12170727 12170834 -164803306 + FLAM_A SINE Alu 1 108 -34 484 261 0 0 chrX 12171895 12172006 -164802134 - MLT1J LTR MaLR -142 369 259 208 333 78 31 chrX 12181760 12182015 -164792125 + L2 LINE L2 2844 3110 -203 234 62 0 0 chrX 12184105 12184137 -164790003 + (TC)n Simple_repeat Simple_repeat 1 32 0 629 265 102 23 chrX 12184547 12184965 -164789175 + MLT1F1 LTR MaLR 18 506 -61 229 170 75 0 chrX 12185004 12185057 -164789083 - AluJb SINE Alu 0 302 246 1453 160 0 8 chrX 12185245 12185495 -164788645 - AluJb SINE Alu -64 248 1 377 302 65 64 chrX 12186535 12186939 -164787201 - MLT1J2 LTR MaLR -2 407 1 285 321 52 0 chrX 12187137 12187290 -164786850 - Charlie8 DNA MER1_type -2235 182 15 43754 31 23 1 chrX 12188020 12194033 -164780107 - L1PA3 LINE L1 -1 6154 3 221 293 13 0 chrX 12194682 12194757 -164779383 - MER5B DNA MER1_type -98 80 5 645 262 21 0 chrX 12196499 12196640 -164777500 - MIR SINE MIR -102 160 17 294 216 40 14 chrX 12196832 12196906 -164777234 + Charlie7 DNA MER1_type 30 105 -2507 * 333 216 39 46 chrX 12196873 12197026 -164777114 + Charlie7 DNA MER1_type 2420 2571 -41 585 276 56 80 chrX 12197281 12197567 -164776573 - L2 LINE L2 -1 3271 2993 747 191 0 0 chrX 12197581 12197712 -164776428 + FLAM_C SINE Alu 1 131 -2 317 353 64 41 chrX 12197924 12198343 -164775797 - L2 LINE L2 -565 2749 2321 399 211 0 0 chrX 12198358 12198448 -164775692 + GA-rich Low_complexity Low_complexity 1 90 0 276 257 14 14 chrX 12198815 12198885 -164775255 + GA-rich Low_complexity Low_complexity 3 72 0 24 32 0 0 chrX 12198897 12198928 -164775212 + AT_rich Low_complexity Low_complexity 1 31 0 181 295 295 0 chrX 12199195 12199300 -164774840 - L2 LINE L2 -8 3264 3129 732 71 43 64 chrX 12200964 12201104 -164773036 - L1MB8 LINE L1 0 6178 6042 371 331 129 30 chrX 12201126 12201389 -164772751 + L3b LINE CR1 1103 1391 -192 356 287 46 9 chrX 12201765 12201830 -164772310 - L2 LINE L2 -3 3269 3197 735 199 168 51 chrX 12201830 12202026 -164772114 + MER20 DNA MER1_type 1 219 0 356 287 46 9 chrX 12202026 12202068 -164772072 - L2 LINE L2 -75 3197 3158 1688 126 44 14 chrX 12202360 12202525 -164771615 - AluJb SINE Alu -8 304 125 405 0 0 0 chrX 12202525 12202570 -164771570 + (TG)n Simple_repeat Simple_repeat 2 46 0 1688 126 44 14 chrX 12202570 12202698 -164771442 - AluJb SINE Alu -187 125 2 231 129 0 15 chrX 12203453 12203492 -164770648 + MIR SINE MIR 106 144 -64 230 244 0 0 chrX 12203578 12203623 -164770517 + polypyrimidine Low_complexity Low_complexity 2 46 0 189 0 0 0 chrX 12205633 12205654 -164768486 + (A)n Simple_repeat Simple_repeat 1 21 0 1209 186 5 18 chrX 12205862 12206082 -164768058 - MER20 DNA MER1_type 0 219 3 246 212 18 90 chrX 12206448 12206523 -164767617 - MIR SINE MIR -64 144 82 2087 92 0 18 chrX 12209887 12210169 -164763971 + AluSx SINE Alu 1 277 -35 231 36 0 0 chrX 12210173 12210201 -164763939 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2057 135 3 0 chrX 12210591 12210902 -164763238 - AluSx SINE Alu 0 312 1 180 163 0 0 chrX 12210912 12210955 -164763185 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 287 276 0 0 chrX 12210957 12211015 -164763125 - L2 LINE L2 -76 3237 3180 327 313 0 10 chrX 12211673 12211769 -164762371 - MIR SINE MIR -86 176 82 1887 115 194 22 chrX 12213315 12213680 -164760460 - MSTA LTR MaLR 0 428 1 217 232 11 105 chrX 12213772 12213867 -164760273 + L2 LINE L2 2956 3041 -231 201 227 23 0 chrX 12213997 12214041 -164760099 + L2 LINE L2 3265 3309 -4 334 266 8 70 chrX 12214116 12214244 -164759896 - MIR3 SINE MIR -3 205 86 1553 60 74 5 chrX 12214626 12214841 -164759299 - MER30 DNA MER1_type 0 230 1 607 216 148 0 chrX 12214849 12215011 -164759129 + MER5A DNA MER1_type 4 189 0 458 227 234 0 chrX 12215017 12215158 -164758982 - MER5B DNA MER1_type 0 178 5 1672 169 3 13 chrX 12216414 12216715 -164757425 - AluJb SINE Alu -14 298 1 370 183 28 0 chrX 12216715 12216786 -164757354 - MIR SINE MIR -55 153 81 205 295 0 0 chrX 12217126 12217187 -164756953 + MIR SINE MIR 87 147 -61 233 109 87 22 chrX 12217479 12217525 -164756615 - L2 LINE L2 0 3313 3265 931 256 32 16 chrX 12218439 12218685 -164755455 + MIR SINE MIR 13 262 0 405 326 0 14 chrX 12218687 12218831 -164755309 + (CAT)n Simple_repeat Simple_repeat 2 143 0 1555 223 104 43 chrX 12220652 12221115 -164753025 - LTR16C LTR ERVL 0 491 1 270 0 0 0 chrX 12221578 12221608 -164752532 + (TAA)n Simple_repeat Simple_repeat 1 30 0 390 129 0 0 chrX 12221945 12222007 -164752133 + (CA)n Simple_repeat Simple_repeat 1 62 0 218 288 98 33 chrX 12222149 12222302 -164751838 - L2 LINE L2 -240 3032 2870 593 89 0 0 chrX 12222363 12222442 -164751698 + MADE1 DNA Mariner 1 79 -1 219 69 0 0 chrX 12222628 12222657 -164751483 + (TCC)n Simple_repeat Simple_repeat 3 31 0 * 295 83 33 33 chrX 12222650 12222710 -164751430 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 181 330 90 0 chrX 12222756 12222856 -164751284 - MIR SINE MIR -1 261 153 1278 225 74 39 chrX 12223384 12223819 -164750321 + MLT1J2 LTR MaLR 1 450 0 235 325 25 0 chrX 12224721 12224801 -164749339 - MIR SINE MIR -67 195 114 2242 251 76 16 chrX 12225921 12226618 -164747522 + L1ME2 LINE L1 5426 6164 0 482 246 49 8 chrX 12227269 12227391 -164746749 + MIR SINE MIR 36 162 -100 231 266 25 63 chrX 12227434 12227513 -164746627 - L3 LINE CR1 -8 1569 1494 997 143 0 0 chrX 12227557 12227704 -164746436 - FRAM SINE Alu -16 150 4 22 56 0 0 chrX 12227841 12227877 -164746263 + AT_rich Low_complexity Low_complexity 1 36 0 372 263 106 56 chrX 12227992 12228171 -164745969 - L2 LINE L2 -167 3146 2959 219 36 0 0 chrX 12228183 12228211 -164745929 + (TG)n Simple_repeat Simple_repeat 2 29 0 189 94 0 0 chrX 12228212 12228244 -164745896 + (GA)n Simple_repeat Simple_repeat 2 33 0 421 262 75 0 chrX 12228346 12228453 -164745687 - MIR3 SINE MIR -50 158 44 921 279 0 5 chrX 12229730 12229934 -164744206 + MIR SINE MIR 60 262 0 270 143 0 0 chrX 12230329 12230371 -164743769 + 5S rRNA rRNA 1 42 -79 589 179 8 24 chrX 12230374 12230497 -164743643 + MER5B DNA MER1_type 54 174 -4 198 211 58 39 chrX 12230663 12230715 -164743425 + L2 LINE L2 3261 3313 0 189 147 0 0 chrX 12230728 12230762 -164743378 + (CGAA)n Simple_repeat Simple_repeat 3 36 0 410 192 50 20 chrX 12232546 12232645 -164741495 + L2 LINE L2 1891 1992 -1322 684 261 237 46 chrX 12232645 12233147 -164740993 + L2 LINE L2 2695 3301 -12 270 143 0 0 chrX 12233148 12233197 -164740943 + (GGGA)n Simple_repeat Simple_repeat 2 50 0 1792 123 112 37 chrX 12233279 12233628 -164740512 + THE1C LTR MaLR 1 375 0 699 234 110 55 chrX 12234086 12234304 -164739836 - MIR SINE MIR -21 241 12 951 204 0 52 chrX 12234590 12234821 -164739319 + MER20 DNA MER1_type 1 219 0 202 333 149 5 chrX 12235410 12235605 -164738535 + MIR SINE MIR 34 256 -6 198 0 0 0 chrX 12235921 12235943 -164738197 + (A)n Simple_repeat Simple_repeat 1 22 0 323 351 29 17 chrX 12235992 12236166 -164737974 - MER5B DNA MER1_type -1 177 2 241 250 54 0 chrX 12236847 12236903 -164737237 + L2 LINE L2 3251 3309 -4 182 62 31 0 chrX 12237127 12237159 -164736981 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 270 343 10 20 chrX 12238711 12238810 -164735330 + L2 LINE L2 3170 3267 -5 636 163 0 0 chrX 12238846 12238944 -164735196 + MER81 DNA DNA 1 98 -16 1597 194 69 50 chrX 12239681 12239883 -164734257 + L1ME3 LINE L1 5718 5915 -247 2038 128 0 0 chrX 12239883 12240180 -164733960 + AluSx SINE Alu 1 297 -15 1597 194 69 50 chrX 12240180 12240414 -164733726 + L1ME3 LINE L1 5915 6162 0 1995 140 39 14 chrX 12242887 12243244 -164730896 - MER47A DNA MER2_type 0 366 1 998 320 73 5 chrX 12243430 12243811 -164730329 - LTR16C LTR ERVL -6 485 79 2242 187 24 38 chrX 12244490 12244993 -164729147 + L1ME3 LINE L1 5665 6160 -2 347 0 0 23 chrX 12245284 12245328 -164728812 + (CA)n Simple_repeat Simple_repeat 2 44 0 224 231 15 52 chrX 12245425 12245559 -164728581 + (CA)n Simple_repeat Simple_repeat 2 130 0 198 0 0 0 chrX 12245675 12245697 -164728443 + (CAT)n Simple_repeat Simple_repeat 3 24 0 277 316 41 11 chrX 12246330 12246547 -164727593 + L1ME4a LINE L1 5672 5819 -302 293 291 36 18 chrX 12246942 12247052 -164727088 - L2 LINE L2 -1 3271 3160 1106 248 68 40 chrX 12247182 12247609 -164726531 - MLT1J1 LTR MaLR -4 442 4 21 0 0 0 chrX 12247724 12247745 -164726395 + AT_rich Low_complexity Low_complexity 1 21 0 303 300 179 21 chrX 12248263 12248403 -164725737 - L2 LINE L2 0 3272 3111 237 317 125 8 chrX 12248721 12248841 -164725299 - MIR SINE MIR -98 164 31 419 239 0 0 chrX 12249309 12249401 -164724739 + L1ME4a LINE L1 5964 6055 -66 185 163 47 0 chrX 12251594 12251637 -164722503 + A-rich Low_complexity Low_complexity 5 49 0 748 275 0 25 chrX 12251926 12252126 -164722014 - MIR SINE MIR -12 250 56 456 156 78 0 chrX 12252130 12252207 -164721933 + MER3 DNA MER1_type 1 83 -126 184 289 0 0 chrX 12252371 12252409 -164721731 - MER5A DNA MER1_type 0 189 152 322 316 109 45 chrX 12253988 12254345 -164719795 - L2 LINE L2 -438 2876 2497 2444 123 22 6 chrX 12254345 12254703 -164719437 - THE1B LTR MaLR 0 364 1 505 244 0 42 chrX 12255147 12255266 -164718874 + MER81 DNA DNA 1 114 0 618 227 92 5 chrX 12256614 12256799 -164717341 - L1ME3A LINE L1 -24 6146 5946 232 234 468 0 chrX 12258923 12259047 -164715093 + MER5A DNA MER1_type 7 188 -1 211 333 27 0 chrX 12259163 12259238 -164714902 + L3 LINE CR1 1492 1568 -9 1980 136 0 10 chrX 12259278 12259588 -164714552 - AluJb SINE Alu -5 307 1 696 226 170 0 chrX 12261147 12261306 -164712834 + MER5A DNA MER1_type 4 189 0 540 217 134 19 chrX 12261317 12261474 -164712666 - MER5B DNA MER1_type -3 175 1 215 273 20 91 chrX 12262747 12262846 -164711294 + MIR SINE MIR 57 148 -60 5682 109 4 6 chrX 12264254 12265078 -164709062 + L1PA15 LINE L1 5341 6165 0 192 286 48 16 chrX 12265081 12265134 -164709006 - L2 LINE L2 0 3313 3256 1877 194 84 16 chrX 12265134 12265505 -164708635 + MSTD LTR MaLR 1 396 0 408 281 47 47 chrX 12265829 12266000 -164708140 + MER5B DNA MER1_type 1 171 -7 1687 285 111 21 chrX 12266241 12266856 -164707284 - MER115 DNA AcHobo -1 692 23 1241 259 58 14 chrX 12267088 12267447 -164706693 - MLT1J LTR MaLR -9 502 128 232 294 71 48 chrX 12267541 12267667 -164706473 - LTR67 LTR ERVL -1 556 428 456 173 13 0 chrX 12267829 12267904 -164706236 - MER3 DNA MER1_type -124 85 10 346 216 98 29 chrX 12268063 12268165 -164705975 + MIR SINE MIR 65 173 -89 283 258 136 49 chrX 12268166 12268512 -164705628 + L1MC4 LINE L1 7469 7977 -65 468 0 0 0 chrX 12269605 12269657 -164704483 + (TG)n Simple_repeat Simple_repeat 2 53 0 226 278 40 35 chrX 12270157 12270330 -164703810 + L1MEc LINE L1 731 904 -5215 752 282 103 74 chrX 12270427 12271182 -164702958 + L1MEc LINE L1 1012 1744 -1569 1230 213 5 9 chrX 12271182 12271403 -164702737 - MER58A DNA MER1_type -4 220 1 752 282 103 74 chrX 12271403 12271542 -164702598 + L1MEc LINE L1 1744 1878 -1435 414 0 0 0 chrX 12271542 12271588 -164702552 + (CA)n Simple_repeat Simple_repeat 1 46 0 752 282 103 74 chrX 12271588 12271695 -164702445 + L1MEc LINE L1 1878 1980 -1333 3349 116 37 8 chrX 12271695 12272203 -164701937 + L1MC1 LINE L1 5811 6333 0 752 282 103 74 chrX 12272203 12272597 -164701543 + L1MEc LINE L1 1980 2469 -844 423 0 0 0 chrX 12272774 12272821 -164701319 + (TG)n Simple_repeat Simple_repeat 1 47 0 349 121 52 0 chrX 12273668 12273726 -164700414 - Charlie5 DNA MER1_type -224 2388 2328 5665 112 12 12 chrX 12273736 12274561 -164699579 - L1MA4A LINE L1 -1 6302 5478 2589 185 51 2 chrX 12274561 12275074 -164699066 - L1MC3 LINE L1 -53 7732 7195 269 235 0 0 chrX 12275077 12275128 -164699012 - MLT1J LTR MaLR -442 125 75 465 124 237 0 chrX 12275162 12275259 -164698881 - MER3 DNA MER1_type -41 168 49 455 253 37 58 chrX 12275552 12275737 -164698403 + MIR SINE MIR 32 212 -49 779 305 95 29 chrX 12275834 12276319 -164697821 + LTR33 LTR ERVL 1 517 -4 306 285 73 32 chrX 12276704 12276827 -164697313 + MIR SINE MIR 15 142 -120 425 233 125 25 chrX 12276869 12276989 -164697151 - L2 LINE L2 0 3313 3182 1136 291 76 8 chrX 12277012 12277429 -164696711 - LTR16A LTR ERVL -3 454 1 2827 104 0 3 chrX 12277527 12277892 -164696248 + THE1B LTR MaLR 1 364 0 281 26 0 26 chrX 12277966 12278005 -164696135 + (TTTTC)n Simple_repeat Simple_repeat 4 41 0 185 292 10 31 chrX 12278077 12278173 -164695967 - L2 LINE L2 -61 3252 3159 342 259 12 0 chrX 12279762 12279847 -164694293 + L1MD3 LINE L1 7798 7883 -112 389 189 33 22 chrX 12279850 12279940 -164694200 + L1MD1 LINE L1 6142 6232 -10 629 243 80 26 chrX 12280006 12280232 -164693908 - MIR SINE MIR 0 262 25 1091 261 112 24 chrX 12280254 12280637 -164693503 - LTR16C LTR ERVL 0 491 75 2313 47 4 7 chrX 12282757 12283034 -164691106 + AluY SINE Alu 35 310 -1 377 218 82 0 chrX 12283341 12283451 -164690689 - L1ME3 LINE L1 -88 6074 5956 455 223 11 0 chrX 12283454 12283548 -164690592 - L1ME3 LINE L1 -534 5636 5542 491 255 27 16 chrX 12284442 12284626 -164689514 + L1MC5 LINE L1 7741 7926 -35 715 216 156 37 chrX 12284719 12284988 -164689152 + L1MC5 LINE L1 7608 7908 -53 938 233 116 13 chrX 12285501 12285733 -164688407 + MIR SINE MIR 7 262 0 306 106 0 0 chrX 12286015 12286062 -164688078 + (TCC)n Simple_repeat Simple_repeat 1 47 0 1764 138 0 66 chrX 12286062 12286367 -164687773 - AluSx SINE Alu -27 285 1 430 310 66 29 chrX 12286676 12286918 -164687222 + L2 LINE L2 1940 2190 -1124 921 261 111 65 chrX 12287020 12287188 -164686952 + MLT1K LTR MaLR 116 275 -313 189 0 0 0 chrX 12287188 12287209 -164686931 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 921 261 111 65 chrX 12287209 12287224 -164686916 + MLT1K LTR MaLR 275 288 -300 1900 167 3 0 chrX 12287224 12287518 -164686622 - AluJo SINE Alu -17 295 1 921 261 111 65 chrX 12287518 12287766 -164686374 + MLT1K LTR MaLR 288 568 -20 464 280 0 8 chrX 12287766 12287898 -164686242 + L2 LINE L2 2216 2346 -968 501 258 75 0 chrX 12287963 12288083 -164686057 + L2 LINE L2 3184 3312 -1 387 313 114 40 chrX 12288104 12288450 -164685690 + L2 LINE L2 2454 2894 -378 2536 170 21 16 chrX 12288450 12288880 -164685260 - MSTB1 LTR MaLR 0 432 1 387 313 114 40 chrX 12288880 12289092 -164685048 + L2 LINE L2 2894 3089 -183 959 188 46 5 chrX 12289176 12289373 -164684767 + MLT1J2 LTR MaLR 43 247 -203 311 311 145 26 chrX 12290295 12290488 -164683652 - MIR SINE MIR -39 223 8 642 208 122 35 chrX 12290973 12291137 -164683003 + L1ME2 LINE L1 5944 6129 -35 6218 121 13 3 chrX 12291137 12292901 -164681239 + L1PA15 LINE L1 4389 6158 -7 642 208 122 35 chrX 12292901 12292933 -164681207 + L1ME2 LINE L1 6129 6157 -7 364 211 14 0 chrX 12292935 12293006 -164681134 + Charlie2 DNA MER1_type 2787 2858 -4 1848 166 3 46 chrX 12293032 12293357 -164680783 - AluJb SINE Alu -1 311 1 1043 166 0 18 chrX 12295107 12295276 -164678864 + FRAM SINE Alu 1 163 -13 2133 197 49 14 chrX 12295580 12296026 -164678114 + MLT1C LTR MaLR 6 467 0 728 179 205 26 chrX 12296095 12296285 -164677855 + MIR SINE MIR 29 252 -10 431 169 52 0 chrX 12296703 12296780 -164677360 - MER5A DNA MER1_type -98 91 11 397 242 185 32 chrX 12296797 12296954 -164677186 + MER5A DNA MER1_type 9 189 0 763 223 17 23 chrX 12297007 12297182 -164676958 + MER5B DNA MER1_type 5 178 0 764 255 33 45 chrX 12297280 12297523 -164676617 + MIR SINE MIR 3 242 -20 197 121 0 0 chrX 12297653 12297686 -164676454 + L2 LINE L2 3279 3311 -2 650 191 9 17 chrX 12297767 12297882 -164676258 + MER81 DNA DNA 1 114 0 246 116 0 0 chrX 12298017 12298060 -164676080 + (TG)n Simple_repeat Simple_repeat 1 43 0 807 249 31 35 chrX 12298152 12298381 -164675759 + MIR SINE MIR 35 262 0 298 269 227 0 chrX 12298557 12298698 -164675442 + MER91A DNA MER1_type 18 190 -6 738 271 104 36 chrX 12299741 12300106 -164674034 + MLT1H LTR MaLR 29 418 -131 402 329 79 12 chrX 12300417 12300657 -164673483 + L3 LINE CR1 592 847 -730 28 0 0 0 chrX 12300671 12300699 -164673441 + AT_rich Low_complexity Low_complexity 1 28 0 393 230 22 28 chrX 12300705 12300833 -164673307 + (TATAA)n Simple_repeat Simple_repeat 1 129 -48 200 57 0 29 chrX 12300840 12300875 -164673265 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1851 157 3 20 chrX 12300875 12301166 -164672974 - AluJb SINE Alu -24 288 1 393 230 22 28 chrX 12301166 12301215 -164672925 + (TATAA)n Simple_repeat Simple_repeat 129 177 0 610 238 99 79 chrX 12301225 12301477 -164672663 + L1ME4a LINE L1 5598 5862 -259 498 274 26 32 chrX 12301477 12301667 -164672473 + MER5A DNA MER1_type 1 189 0 610 238 99 79 chrX 12301667 12301818 -164672322 + L1ME4a LINE L1 5862 6009 -112 309 335 158 28 chrX 12301951 12302598 -164671542 - L2 LINE L2 -815 2499 1769 494 277 23 15 chrX 12303661 12303791 -164670349 + MIR3 SINE MIR 50 180 -28 1101 308 50 17 chrX 12304811 12305276 -164668864 + MLT1J LTR MaLR 1 480 -31 239 289 74 66 chrX 12305304 12305542 -164668598 - MIR SINE MIR -21 241 3 975 96 7 0 chrX 12305801 12305936 -164668204 - MER97b DNA MER1_type? -874 179 44 556 154 94 17 chrX 12306499 12306616 -164667524 + MER53 DNA DNA 1 126 -63 * 957 123 41 12 chrX 12306612 12306783 -164667357 - MER53 DNA DNA -12 177 2 482 264 107 13 chrX 12306913 12307072 -164667068 + MIR3 SINE MIR 3 176 -32 1816 136 32 6 chrX 12307141 12307457 -164666683 - MER33 DNA MER1_type 0 324 1 2150 88 0 66 chrX 12307483 12307839 -164666301 + AluSg SINE Alu 1 336 0 2357 84 3 16 chrX 12307879 12308188 -164665952 + AluY SINE Alu 1 305 -6 3234 170 68 38 chrX 12308339 12308967 -164665173 - MER82 DNA MER2_type 0 653 7 2908 156 88 7 chrX 12308970 12309514 -164664626 - L1MC3 LINE L1 -9 7776 7189 362 229 32 21 chrX 12309515 12309608 -164664532 - MLT1F1 LTR MaLR -395 154 50 850 160 7 0 chrX 12309612 12309762 -164664378 - L1MC3 LINE L1 -696 7089 6939 881 284 25 0 chrX 12310116 12310352 -164663788 - MIR SINE MIR -1 261 20 1740 175 0 7 chrX 12310934 12311219 -164662921 + AluJo SINE Alu 7 289 -23 310 198 100 69 chrX 12311284 12311415 -164662725 - MLT1J2 LTR MaLR -38 408 279 225 303 20 20 chrX 12311441 12311540 -164662600 - MLT1I LTR MaLR -204 205 107 189 339 0 0 chrX 12312051 12312107 -164662033 + MIR SINE MIR 72 127 -81 617 195 0 16 chrX 12312218 12312341 -164661799 + L1ME3A LINE L1 6044 6164 -6 462 229 130 0 chrX 12313315 12313446 -164660694 + MIR SINE MIR 100 247 -15 788 253 5 0 chrX 12313959 12314145 -164659995 - LTR16C LTR ERVL 0 491 305 522 328 61 0 chrX 12314119 12314299 -164659841 - LTR16C LTR ERVL -298 193 3 * 1147 288 65 83 chrX 12315906 12316921 -164657219 + L1MEd LINE L1 47 1132 -1358 450 0 0 0 chrX 12316921 12316971 -164657169 + (GA)n Simple_repeat Simple_repeat 1 50 0 1147 288 65 83 chrX 12316971 12317298 -164656842 + L1MEd LINE L1 1132 1463 -1027 438 243 5 3 chrX 12317306 12317427 -164656713 - MLT1J1 LTR MaLR -325 121 1 6852 112 14 4 chrX 12317670 12320897 -164653243 + L1PA11 LINE L1 2857 6170 -4 762 273 24 57 chrX 12321113 12321169 -164652971 - L2 LINE L2 0 3313 3257 1495 134 0 0 chrX 12321169 12321378 -164652762 - MER3 DNA MER1_type 0 209 1 762 273 24 57 chrX 12321378 12321618 -164652522 - L2 LINE L2 -56 3257 3027 1239 222 45 62 chrX 12321618 12321970 -164652170 - MLT1J1 LTR MaLR 0 446 101 498 262 10 0 chrX 12321976 12322079 -164652061 + MER81 DNA DNA 8 111 -3 388 265 30 66 chrX 12322219 12322385 -164651755 - L2 LINE L2 -300 3013 2854 346 299 198 5 chrX 12322386 12322583 -164651557 - L3 LINE CR1 -969 608 374 2175 253 24 33 chrX 12322598 12323052 -164651088 + MER69B DNA AcHobo 2 451 -218 2837 129 39 0 chrX 12323052 12323462 -164650678 - MSTC LTR MaLR -2 426 1 2175 253 24 33 chrX 12323462 12323582 -164650558 + MER69B DNA AcHobo 451 571 -98 1594 204 101 21 chrX 12323602 12323765 -164650375 + MLT1C LTR MaLR 8 157 -310 2659 104 23 0 chrX 12323765 12324119 -164650021 + THE1B LTR MaLR 1 362 -2 1594 204 101 21 chrX 12324119 12324381 -164649759 + MLT1C LTR MaLR 157 467 0 2262 186 48 30 chrX 12324385 12324922 -164649218 + MER69B DNA AcHobo 661 1207 -19 515 260 50 64 chrX 12325077 12325296 -164648844 - MER20B DNA MER1_type -3 216 1 197 275 14 14 chrX 12325453 12325522 -164648618 - MER5B DNA MER1_type -104 74 6 1198 181 5 14 chrX 12325527 12325742 -164648398 + MER20 DNA MER1_type 7 219 0 1605 243 45 56 chrX 12326196 12326710 -164647430 - L1MC4a LINE L1 -1979 5829 5322 1310 161 0 22 chrX 12326711 12327070 -164647070 - AluJb SINE Alu 0 312 82 673 312 75 13 chrX 12328051 12328359 -164645781 - L2 LINE L2 -1416 1898 1572 251 239 113 0 chrX 12328361 12328432 -164645708 + MER45A DNA AcHobo 3 81 -97 481 236 9 0 chrX 12331088 12331194 -164642946 + MER45A DNA AcHobo 46 152 -26 1019 213 80 0 chrX 12331205 12331468 -164642672 - L2 LINE L2 -1734 1580 1297 3316 263 93 16 chrX 12331722 12333068 -164641072 + L2 LINE L2 1849 3301 -12 231 224 0 53 chrX 12333068 12333144 -164640996 - MLT1J LTR MaLR -330 181 110 * 508 200 20 10 chrX 12333086 12333186 -164640954 - LTR67 LTR ERVL -387 170 70 829 204 60 36 chrX 12334460 12334702 -164639438 + MLT1F1 LTR MaLR 313 567 0 279 333 20 48 chrX 12334702 12334849 -164639291 - L2 LINE L2 -983 2331 2189 195 42 0 0 chrX 12334851 12334875 -164639265 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1871 269 55 3 chrX 12334909 12335478 -164638662 + L2 LINE L2 2013 2610 -704 6262 189 48 30 chrX 12335562 12337342 -164636798 - L1MD1 LINE L1 -3 6633 4789 2173 120 3 0 chrX 12337342 12337634 -164636506 - AluSx SINE Alu -19 293 1 6262 189 48 30 chrX 12337634 12338474 -164635666 - L1MD1 LINE L1 -1847 4789 3965 2108 104 23 10 chrX 12338474 12338781 -164635359 - AluSx SINE Alu -1 311 1 10904 203 82 21 chrX 12338781 12342242 -164631898 - L1MD1 LINE L1 -2857 3683 15 2227 135 0 0 chrX 12342939 12343251 -164630889 - AluSx SINE Alu 0 312 1 548 250 24 62 chrX 12343345 12343553 -164630587 - MIR SINE MIR 0 262 63 354 98 0 0 chrX 12344292 12344343 -164629797 + (TG)n Simple_repeat Simple_repeat 1 51 0 885 167 13 0 chrX 12345186 12345336 -164628804 + MER5A DNA MER1_type 4 155 -34 181 159 45 0 chrX 12345349 12345393 -164628747 + L2 LINE L2 3015 3060 -212 501 232 16 20 chrX 12345509 12345760 -164628380 + CT-rich Low_complexity Low_complexity 1 250 0 1747 192 3 0 chrX 12346484 12346781 -164627359 + AluJo SINE Alu 1 298 -14 633 205 29 44 chrX 12346956 12347161 -164626979 - Charlie7 DNA MER1_type -1 2611 2410 286 244 22 11 chrX 12347144 12347234 -164626906 - Charlie7 DNA MER1_type -1888 724 634 * 771 74 0 0 chrX 12347378 12347486 -164626654 + LTR9B LTR ERV1 451 558 -86 1138 264 42 27 chrX 12347551 12347653 -164626487 + LTR16C LTR ERVL 153 252 -239 2672 107 25 3 chrX 12347653 12348009 -164626131 + THE1B LTR MaLR 1 364 0 1138 264 42 27 chrX 12348009 12348240 -164625900 + LTR16C LTR ERVL 252 491 0 1558 236 62 24 chrX 12348250 12348437 -164625703 - Charlie7 DNA MER1_type -2002 610 432 2357 38 52 7 chrX 12348437 12348726 -164625414 - AluY SINE Alu -9 302 1 1558 236 62 24 chrX 12348726 12349005 -164625135 - Charlie7 DNA MER1_type -2180 432 126 189 0 0 0 chrX 12349007 12349028 -164625112 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 296 213 38 25 chrX 12349032 12349112 -164625028 - Charlie7 DNA MER1_type -2531 81 1 692 219 12 6 chrX 12351729 12351893 -164622247 - MER97a DNA MER1_type? -2 892 728 9367 232 48 20 chrX 12351893 12354254 -164619886 + L1MD2 LINE L1 11 2305 -4101 1902 140 0 14 chrX 12354254 12354581 -164619559 + AluSx SINE Alu 1 323 0 9367 232 48 20 chrX 12354581 12357148 -164616992 + L1MD2 LINE L1 2305 5207 -1199 6417 155 7 28 chrX 12357159 12358388 -164615752 + L1MD2 LINE L1 5417 6619 0 385 309 37 56 chrX 12359024 12359348 -164614792 + L1ME4a LINE L1 5602 5919 -202 22 0 0 0 chrX 12359485 12359507 -164614633 + AT_rich Low_complexity Low_complexity 1 22 0 351 266 0 0 chrX 12360994 12361118 -164613022 + (TG)n Simple_repeat Simple_repeat 2 125 0 366 324 27 27 chrX 12362163 12362348 -164611792 - MLT1L LTR MaLR 0 615 431 528 264 16 0 chrX 12362395 12362520 -164611620 - MER94 DNA DNA -4 130 4 324 349 45 0 chrX 12363748 12363880 -164610260 + L2 LINE L2 2224 2361 -953 866 278 208 5 chrX 12363881 12364281 -164609859 + LTR16C LTR ERVL 1 481 -10 385 304 149 36 chrX 12364300 12364715 -164609425 + L2 LINE L2 2372 2833 -481 271 283 72 133 chrX 12364795 12365141 -164608999 + L2 LINE L2 2947 3271 -1 1460 154 75 0 chrX 12366178 12366431 -164607709 - ORSL DNA AcHobo 0 275 4 249 301 0 0 chrX 12366860 12366933 -164607207 + L2 LINE L2 3200 3272 0 207 173 0 0 chrX 12367331 12367383 -164606757 + C-rich Low_complexity Low_complexity 3 54 0 249 246 16 0 chrX 12367479 12367540 -164606600 + (CGG)n Simple_repeat Simple_repeat 1 62 0 23 78 0 0 chrX 12367642 12367693 -164606447 + GC_rich Low_complexity Low_complexity 1 51 0 91 90 0 0 chrX 12367711 12367956 -164606184 + GC_rich Low_complexity Low_complexity 1 245 0 243 247 225 0 chrX 12370380 12370469 -164603671 - MIR SINE MIR -48 214 106 329 241 36 0 chrX 12370562 12370645 -164603495 + MIR SINE MIR 103 188 -74 413 242 30 0 chrX 12371142 12371241 -164602899 - MIR SINE MIR -74 188 87 204 163 0 0 chrX 12371853 12371896 -164602244 + (CA)n Simple_repeat Simple_repeat 2 44 0 2318 158 0 3 chrX 12372118 12372480 -164601660 - MLT1A1 LTR MaLR 0 365 5 300 125 0 0 chrX 12372679 12372719 -164601421 + MER3 DNA MER1_type 1 40 -169 1265 199 70 0 chrX 12372727 12373029 -164601111 + MER33 DNA MER1_type 2 324 0 855 228 107 0 chrX 12375107 12375304 -164598836 - MER20 DNA MER1_type 0 219 2 24 0 0 0 chrX 12376956 12376980 -164597160 + AT_rich Low_complexity Low_complexity 1 24 0 34 0 0 0 chrX 12377097 12377131 -164597009 + AT_rich Low_complexity Low_complexity 1 34 0 243 0 0 0 chrX 12377395 12377422 -164596718 + (TC)n Simple_repeat Simple_repeat 1 27 0 191 361 71 19 chrX 12377970 12378125 -164596015 + MIR3 SINE MIR 37 199 -9 931 245 42 0 chrX 12378642 12378879 -164595261 - MIR SINE MIR -5 257 11 388 178 0 0 chrX 12378933 12379006 -164595134 + L1ME3A LINE L1 6093 6165 -5 443 299 132 0 chrX 12379048 12379245 -164594895 - MLT1L LTR MaLR -54 561 339 1980 248 22 0 chrX 12380059 12380470 -164593670 - LTR16C LTR ERVL 0 491 72 28 29 0 0 chrX 12380829 12380864 -164593276 + AT_rich Low_complexity Low_complexity 1 35 0 2439 74 10 0 chrX 12381118 12381415 -164592725 + AluSc SINE Alu 1 300 -9 424 241 0 0 chrX 12381672 12381755 -164592385 - FRAM/FAM SINE Alu -93 83 1 1280 255 50 13 chrX 12381869 12382246 -164591894 - L1ME3A LINE L1 -15 6155 5765 674 275 59 8 chrX 12382372 12382608 -164591532 - MIR SINE MIR -5 257 10 4484 118 16 20 chrX 12382732 12383433 -164590707 - L1PA15 LINE L1 0 6165 5468 1869 85 33 0 chrX 12383577 12383847 -164590293 + L1MA1 LINE L1 5960 6238 -64 24 32 0 0 chrX 12383868 12383899 -164590241 + AT_rich Low_complexity Low_complexity 1 31 0 5604 63 1 6 chrX 12383934 12384637 -164589503 - L1PA6 LINE L1 0 6154 5455 1339 162 97 17 chrX 12384697 12384987 -164589153 - MER33 DNA MER1_type -11 313 1 596 231 163 0 chrX 12384999 12385159 -164588981 + MER5A DNA MER1_type 4 189 0 311 189 0 14 chrX 12385267 12385341 -164588799 + CT-rich Low_complexity Low_complexity 1 73 0 240 269 0 0 chrX 12385753 12385805 -164588335 + CT-rich Low_complexity Low_complexity 2 53 0 1645 214 27 0 chrX 12386334 12386665 -164587475 + MER58B DNA MER1_type 2 341 0 763 194 73 6 chrX 12386675 12386840 -164587300 - MER5B DNA MER1_type 0 178 3 180 0 0 0 chrX 12387022 12387042 -164587098 + (T)n Simple_repeat Simple_repeat 1 20 0 234 333 14 35 chrX 12387401 12387542 -164586598 + L2 LINE L2 3133 3270 -2 1779 186 80 0 chrX 12387758 12388096 -164586044 - MLT1A1 LTR MaLR 0 365 1 484 292 7 26 chrX 12388337 12388491 -164585649 + L2 LINE L2 3163 3313 0 1500 200 141 76 chrX 12388586 12389062 -164585078 + Charlie4a DNA MER1_type 1 507 -1 351 186 174 0 chrX 12389104 12389190 -164584950 + L1ME3A LINE L1 6064 6164 -6 349 301 56 67 chrX 12389193 12389432 -164584708 + MLT1L LTR MaLR 139 393 -195 856 305 70 59 chrX 12390567 12391378 -164582762 - ERVL LTR ERVL -17 5341 4540 917 296 92 58 chrX 12391379 12391936 -164582204 - ERVL LTR ERVL -757 4239 3667 360 271 17 8 chrX 12391948 12392066 -164582074 - MLT1I LTR MaLR -290 119 1 2684 24 0 3 chrX 12393039 12393336 -164580804 - AluY SINE Alu -15 296 1 195 42 0 0 chrX 12394021 12394045 -164580095 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 204 111 0 0 chrX 12394044 12394080 -164580060 + (CA)n Simple_repeat Simple_repeat 1 36 0 1389 154 14 107 chrX 12394772 12395128 -164579012 - MER33 DNA MER1_type 0 324 2 865 271 9 5 chrX 12395702 12395916 -164578224 - MIR SINE MIR -21 241 27 1192 346 117 25 chrX 12396077 12396944 -164577196 + L3 LINE CR1 221 1166 -411 615 209 79 40 chrX 12396945 12397122 -164577018 - MER63A DNA MER1_type 0 210 27 200 111 28 0 chrX 12397195 12397231 -164576909 + A-rich Low_complexity Low_complexity 1 37 0 258 267 216 0 chrX 12397541 12397657 -164576483 - MER5A DNA MER1_type -2 187 47 547 209 8 30 chrX 12398208 12398342 -164575798 - L2 LINE L2 -3 3310 3180 354 240 200 0 chrX 12400869 12400994 -164573146 - MIR SINE MIR -93 169 20 579 209 93 14 chrX 12401948 12402087 -164572053 + MER5A DNA MER1_type 34 183 -6 766 203 135 69 chrX 12402254 12402345 -164571795 - Charlie4a DNA MER1_type -1490 471 387 2141 140 0 3 chrX 12402345 12402653 -164571487 + AluSx SINE Alu 1 307 -5 766 203 135 69 chrX 12402653 12402921 -164571219 - Charlie4a DNA MER1_type -1574 387 88 2475 173 26 16 chrX 12402921 12403413 -164570727 + MLT1D LTR MaLR 1 497 -8 426 236 22 0 chrX 12403421 12403510 -164570630 - Charlie4a DNA MER1_type -416 92 2 473 251 39 50 chrX 12403525 12403704 -164570436 + MLT1J2 LTR MaLR 272 448 -2 25 0 0 0 chrX 12404998 12405023 -164569117 + AT_rich Low_complexity Low_complexity 1 25 0 458 300 65 24 chrX 12405162 12405502 -164568638 + L1ME3 LINE L1 4363 4716 -1430 841 186 13 19 chrX 12405730 12405886 -164568254 - MLT1E LTR MaLR -438 155 1 1005 313 47 17 chrX 12405894 12406421 -164567719 + L1ME3 LINE L1 5307 5849 -321 2014 145 0 16 chrX 12406460 12406771 -164567369 + AluSx SINE Alu 7 312 0 274 190 4 16 chrX 12406797 12406879 -164567261 + L1ME3 LINE L1 5870 5951 -211 180 0 0 0 chrX 12406986 12407006 -164567134 + (TTA)n Simple_repeat Simple_repeat 2 21 0 816 168 189 5 chrX 12407415 12407600 -164566540 - MER20 DNA MER1_type 0 219 1 951 239 139 42 chrX 12408905 12409458 -164564682 + L1ME4a LINE L1 5510 6116 -5 222 176 0 0 chrX 12409982 12410033 -164564107 + CT-rich Low_complexity Low_complexity 1 51 0 739 165 38 15 chrX 12410797 12411069 -164563071 + MLT1A1 LTR MaLR 1 365 0 577 261 20 0 chrX 12411121 12411274 -164562866 + MIR SINE MIR 97 252 -10 840 203 90 47 chrX 12411338 12411594 -164562546 - L1ME3 LINE L1 -331 5831 5565 203 265 60 84 chrX 12411620 12411703 -164562437 - L2 LINE L2 -32 3240 3160 1035 186 73 0 chrX 12412344 12412548 -164561592 - MER20 DNA MER1_type 0 219 1 1125 192 0 19 chrX 12413170 12413378 -164560762 + AluJb SINE Alu 86 289 -23 190 229 197 0 chrX 12413383 12413444 -164560696 - L2 LINE L2 -21 3251 3179 201 341 110 0 chrX 12413505 12413596 -164560544 + MIR3 SINE MIR 57 157 -51 575 243 85 0 chrX 12413602 12413779 -164560361 + MER117 DNA MER1_type 6 197 0 231 36 0 0 chrX 12414655 12414683 -164559457 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 311 91 0 0 chrX 12416199 12416243 -164557897 + MIR SINE MIR 106 149 -59 196 350 75 62 chrX 12416252 12416412 -164557728 - L2 LINE L2 -9 3263 3102 789 220 162 0 chrX 12416495 12416686 -164557454 + MIR SINE MIR 20 241 -21 1323 240 88 6 chrX 12417506 12417835 -164556305 + MER63 DNA MER1_type 694 1049 -11 259 268 39 105 chrX 12417846 12417999 -164556141 + MIR SINE MIR 90 232 -30 466 258 227 15 chrX 12418034 12418232 -164555908 + MIR SINE MIR 1 240 -22 747 237 87 138 chrX 12419059 12419531 -164554609 + MLT1J2 LTR MaLR 1 448 -2 508 270 29 17 chrX 12419591 12419765 -164554375 - MER112 DNA MER1_type -84 176 1 1634 286 44 24 chrX 12419935 12420439 -164553701 + MLT1K LTR MaLR 67 580 -8 180 0 0 0 chrX 12420468 12420488 -164553652 + (T)n Simple_repeat Simple_repeat 1 20 0 304 279 0 0 chrX 12420701 12420769 -164553371 - L2 LINE L2 -1 3271 3204 447 281 31 31 chrX 12420796 12420956 -164553184 - MIR SINE MIR 0 262 103 595 304 91 12 chrX 12421278 12421521 -164552619 + MIR SINE MIR 1 262 0 251 292 28 0 chrX 12421530 12421602 -164552538 + MIR3 SINE MIR 109 182 -26 385 249 0 109 chrX 12421968 12422169 -164551971 + G-rich Low_complexity Low_complexity 2 180 0 264 307 53 0 chrX 12422593 12422668 -164551472 - L2 LINE L2 -25 3247 3169 576 306 61 15 chrX 12422695 12422891 -164551249 + MLT1G LTR MaLR 30 234 -321 1032 42 4 4 chrX 12422893 12423009 -164551131 - L1PA7 LINE L1 -392 5762 5644 2942 74 3 3 chrX 12423009 12423373 -164550767 + L1PA7 LINE L1 5788 6153 -1 1032 42 4 4 chrX 12423373 12423390 -164550750 - L1P3 LINE L1 -509 5645 5629 1401 231 44 33 chrX 12423434 12423794 -164550346 + MLT1G LTR MaLR 227 590 0 539 320 34 17 chrX 12424120 12424298 -164549842 - MIR3 SINE MIR -5 203 23 697 300 22 9 chrX 12424363 12424586 -164549554 + MIR SINE MIR 23 248 -14 656 112 10 10 chrX 12424673 12424793 -164549347 - FLAM_C SINE Alu 0 143 32 258 336 36 29 chrX 12425433 12425570 -164548570 - L2 LINE L2 0 3313 3176 291 311 49 24 chrX 12425942 12426106 -164548034 - L2 LINE L2 -560 2754 2587 354 137 0 0 chrX 12426595 12426646 -164547494 - LTR16C LTR ERVL -7 484 434 631 131 0 20 chrX 12426647 12426746 -164547394 - Tigger7 DNA MER2_type -1 2490 2394 1356 199 27 15 chrX 12426749 12427011 -164547129 - Tigger7 DNA MER2_type -2222 265 1 999 261 151 13 chrX 12427011 12427393 -164546747 - LTR16C LTR ERVL -56 435 1 2214 95 3 0 chrX 12427567 12427903 -164546237 - AluSq SINE Alu 0 337 1 238 277 73 58 chrX 12428291 12428428 -164545712 - MER5B DNA MER1_type -37 141 3 382 223 36 45 chrX 12428295 12428407 -164545733 + MER5A DNA MER1_type 50 160 -29 237 296 11 11 chrX 12428450 12428538 -164545602 + GA-rich Low_complexity Low_complexity 3 90 0 738 188 227 0 chrX 12429135 12429289 -164544851 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chrX 12429781 12429803 -164544337 + AT_rich Low_complexity Low_complexity 1 22 0 2244 107 10 7 chrX 12430250 12430560 -164543580 - AluY SINE Alu 0 311 1 582 286 118 35 chrX 12430990 12431245 -164542895 - MLT1J2 LTR MaLR -118 332 57 2822 186 36 19 chrX 12432486 12433014 -164541126 + MLT1F LTR MaLR 4 540 -2 1476 176 14 7 chrX 12433123 12433401 -164540739 - L1MD3 LINE L1 -189 7806 7527 230 352 14 0 chrX 12433440 12433511 -164540629 - MIR SINE MIR -93 115 44 190 200 0 0 chrX 12433774 12433809 -164540331 - L2 LINE L2 -21 3251 3217 360 257 31 43 chrX 12433893 12434049 -164540091 + MLT2E LTR ERVL 37 187 -476 180 241 398 0 chrX 12434719 12434802 -164539338 + L2 LINE L2 3137 3252 -20 1661 172 130 17 chrX 12435103 12435464 -164538676 - LTR37A LTR ERV1 -23 403 2 2399 244 72 25 chrX 12435567 12435931 -164538209 + L1ME2 LINE L1 5191 5536 -628 2611 110 78 5 chrX 12435931 12436330 -164537810 - MSTA LTR MaLR 0 428 1 2399 244 72 25 chrX 12436330 12436805 -164537335 + L1ME2 LINE L1 5536 6078 -86 362 200 29 0 chrX 12436809 12436879 -164537261 + Tigger5 DNA MER2_type 1 72 -2251 430 197 40 0 chrX 12436935 12437011 -164537129 + Tigger5 DNA MER2_type 2245 2323 0 2206 128 25 71 chrX 12437352 12437744 -164536396 - THE1C LTR MaLR 0 375 2 1047 170 49 40 chrX 12437992 12438258 -164535882 - MLT1A1 LTR MaLR 0 365 48 1977 154 0 7 chrX 12438259 12438552 -164535588 - AluJb SINE Alu -21 291 1 357 43 0 0 chrX 12438665 12438712 -164535428 + (TG)n Simple_repeat Simple_repeat 1 47 0 338 61 20 0 chrX 12438712 12438761 -164535379 + (GA)n Simple_repeat Simple_repeat 2 51 0 365 245 69 0 chrX 12439439 12439541 -164534599 - LTR16A LTR ERVL -105 345 237 1767 124 4 40 chrX 12439541 12439814 -164534326 - AluSx SINE Alu -13 299 37 301 225 0 28 chrX 12440078 12440149 -164533991 + MIR SINE MIR 139 207 -55 313 304 124 52 chrX 12440550 12440696 -164533444 - L1 LINE L1 -3403 2743 2609 201 39 0 0 chrX 12440696 12440722 -164533418 + (TA)n Simple_repeat Simple_repeat 1 26 0 313 304 124 52 chrX 12440722 12440821 -164533319 - L1 LINE L1 -3537 2609 2519 1829 158 0 14 chrX 12440821 12441136 -164533004 - AluJb SINE Alu 0 313 3 313 304 124 52 chrX 12441136 12441402 -164532738 - L1 LINE L1 -3627 2519 2193 2266 111 71 31 chrX 12441719 12442069 -164532071 - THE1B LTR MaLR 0 364 1 277 109 27 45 chrX 12442626 12442736 -164531404 + (CAAA)n Simple_repeat Simple_repeat 3 110 0 405 372 55 7 chrX 12442892 12443166 -164530974 + L2 LINE L2 2100 2386 -928 362 270 17 9 chrX 12443168 12443283 -164530857 + L1ME LINE L1 5612 5727 -435 * 2294 251 98 46 chrX 12443264 12443380 -164530760 + L1ME LINE L1 3781 3890 -2256 2338 99 0 0 chrX 12443380 12443672 -164530468 + AluSx SINE Alu 3 294 -18 2294 251 98 46 chrX 12443672 12444649 -164529491 + L1ME LINE L1 3890 4931 -1215 1135 255 108 38 chrX 12444693 12445117 -164529023 - LTR16A1 LTR ERVL -3 454 1 290 197 0 61 chrX 12446214 12446280 -164527860 - L2 LINE L2 -1 3312 3251 339 298 51 37 chrX 12446376 12446591 -164527549 + L1ME LINE L1 5512 5729 -392 399 260 16 120 chrX 12447732 12447803 -164526337 + MIR SINE MIR 50 127 -135 1447 258 82 26 chrX 12447803 12448229 -164525911 - MLT1J2 LTR MaLR 0 450 1 399 260 16 120 chrX 12448229 12448349 -164525791 + MIR SINE MIR 127 221 -41 189 0 0 0 chrX 12449767 12449788 -164524352 + (T)n Simple_repeat Simple_repeat 1 21 0 241 268 73 56 chrX 12450152 12450295 -164523845 + MIR3 SINE MIR 14 157 -64 197 248 229 9 chrX 12450311 12450416 -164523724 + MIR SINE MIR 2 129 -133 1756 153 21 11 chrX 12450507 12450789 -164523351 - L1MC1 LINE L1 -6 6327 6043 1841 127 41 14 chrX 12450789 12451081 -164523059 - Tigger1 DNA MER2_type 0 2418 2119 * 4789 106 76 1 chrX 12451060 12451761 -164522379 - Tigger1 DNA MER2_type -1665 753 1 4998 133 13 3 chrX 12451762 12452544 -164521596 - L1MC1 LINE L1 -290 6043 5254 2222 176 15 27 chrX 12452546 12452558 -164521582 + MLT2B2 LTR ERVL 1 12 -503 785 42 0 0 chrX 12452558 12452653 -164521487 - L1PA7 LINE L1 -1 6153 6059 2222 176 15 27 chrX 12452653 12453053 -164521087 + MLT2B2 LTR ERVL 12 393 -122 6679 249 30 29 chrX 12453053 12454810 -164519330 - L1MEc LINE L1 -2295 3920 2205 661 169 66 0 chrX 12454810 12454946 -164519194 - L1MA8 LINE L1 -1 6290 6146 6679 249 30 29 chrX 12454946 12455820 -164518320 - L1MEc LINE L1 -4010 2205 1333 552 257 0 46 chrX 12455824 12455976 -164518164 + MIR SINE MIR 114 258 -4 701 285 18 36 chrX 12455990 12456211 -164517929 - MIR SINE MIR -34 228 12 416 244 68 91 chrX 12456350 12456526 -164517614 + MIR SINE MIR 86 257 -5 1992 131 0 32 chrX 12456648 12456962 -164517178 - AluJb SINE Alu -8 304 1 236 388 54 14 chrX 12457680 12457827 -164516313 - L2 LINE L2 -5 3267 3115 1393 264 18 28 chrX 12457853 12458250 -164515890 - LTR16C LTR ERVL -1 490 98 247 325 44 75 chrX 12458535 12458787 -164515353 - L2 LINE L2 -407 2907 2664 733 265 209 13 chrX 12458788 12459219 -164514921 + LTR50 LTR ERVL 193 794 -1 1015 233 35 22 chrX 12459466 12459694 -164514446 - MIR SINE MIR -22 240 10 678 204 11 175 chrX 12460562 12460836 -164513304 + MIR SINE MIR 2 230 -32 1535 164 27 38 chrX 12461220 12461512 -164512628 - AluJb SINE Alu -23 289 1 1760 172 0 10 chrX 12462157 12462459 -164511681 - AluJo SINE Alu -3 309 11 5757 137 59 3 chrX 12462473 12463838 -164510302 - L1MA7 LINE L1 0 6291 4848 236 236 66 66 chrX 12463861 12463967 -164510173 - MLT1L LTR MaLR -360 255 150 2264 189 90 22 chrX 12464106 12464605 -164509535 + MLT1F LTR MaLR 10 590 0 886 145 0 8 chrX 12464832 12464956 -164509184 + FLAM_A SINE Alu 2 124 -9 916 267 105 50 chrX 12465206 12465635 -164508505 - L1ME4a LINE L1 -1 6120 5716 1808 153 27 3 chrX 12465635 12465936 -164508204 - AluJo SINE Alu 0 312 5 916 267 105 50 chrX 12465936 12466254 -164507886 - L1ME4a LINE L1 -405 5716 5297 4239 174 31 46 chrX 12466583 12467304 -164506836 - L1MCb LINE L1 -4623 1941 1211 2129 97 49 0 chrX 12467304 12467592 -164506548 - AluSp SINE Alu -11 302 1 2215 118 3 0 chrX 12467598 12467903 -164506237 - AluSx SINE Alu -6 306 1 4239 174 31 46 chrX 12467903 12468463 -164505677 - L1MCb LINE L1 -5358 1206 566 181 178 0 44 chrX 12468631 12468676 -164505464 - L3b LINE CR1 -316 1267 1225 449 254 41 25 chrX 12469563 12469747 -164504393 - MLT1I LTR MaLR 0 409 263 21 36 0 0 chrX 12470731 12470759 -164503381 + AT_rich Low_complexity Low_complexity 1 28 0 198 220 0 0 chrX 12472039 12472098 -164502042 + (TG)n Simple_repeat Simple_repeat 2 60 0 321 212 47 12 chrX 12472713 12472798 -164501342 - L1ME4a LINE L1 -1488 4658 4571 823 146 28 0 chrX 12473031 12473175 -164500965 - MER96B DNA MER1_type? -241 176 29 1271 181 45 57 chrX 12473462 12473793 -164500347 + MER33 DNA MER1_type 1 324 0 940 261 203 15 chrX 12474015 12474483 -164499657 + LTR67 LTR ERVL 2 557 0 2364 95 3 0 chrX 12474782 12475086 -164499054 - AluSx SINE Alu -7 305 1 183 80 0 0 chrX 12475145 12475170 -164498970 + (CA)n Simple_repeat Simple_repeat 2 26 0 1011 263 28 9 chrX 12475340 12475726 -164498414 - LTR16C LTR ERVL -8 483 61 304 289 50 16 chrX 12475838 12475959 -164498181 - L2 LINE L2 0 3313 3189 181 327 0 0 chrX 12476147 12476199 -164497941 - MIR SINE MIR -131 131 80 724 218 29 11 chrX 12476305 12476479 -164497661 + L1ME LINE L1 5519 5695 -426 21 71 0 0 chrX 12476529 12476571 -164497569 + AT_rich Low_complexity Low_complexity 1 42 0 248 152 0 22 chrX 12476863 12476909 -164497231 + L1ME4a LINE L1 6077 6121 0 180 0 0 0 chrX 12478889 12478909 -164495231 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 614 300 19 24 chrX 12479312 12479522 -164494618 + MLT1H LTR MaLR 24 232 -317 222 355 9 28 chrX 12480097 12480204 -164493936 - L3 LINE CR1 -1040 537 433 1852 167 89 23 chrX 12480747 12481184 -164492956 - Charlie2 DNA MER1_type -4 2858 2393 468 189 56 11 chrX 12481279 12481369 -164492771 - Charlie2 DNA MER1_type -2520 342 249 282 211 101 30 chrX 12481689 12481815 -164492325 + MIR SINE MIR 19 146 -62 4496 201 81 15 chrX 12481929 12482133 -164492007 - L1MD2 LINE L1 0 6359 6170 189 0 0 0 chrX 12482133 12482154 -164491986 + (TG)n Simple_repeat Simple_repeat 2 22 0 4496 201 81 15 chrX 12482154 12482954 -164491186 - L1MD2 LINE L1 -189 6170 5424 203 0 0 36 chrX 12482954 12482982 -164491158 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1675 43 0 0 chrX 12482982 12483170 -164490970 - L1PA3 LINE L1 -16 6139 5952 4496 201 81 15 chrX 12483170 12483385 -164490755 - L1MD2 LINE L1 -935 5424 5224 207 0 0 0 chrX 12483385 12483408 -164490732 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 * 252 0 0 0 chrX 12483407 12483435 -164490705 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 4496 201 81 15 chrX 12483408 12483457 -164490683 - L1MD2 LINE L1 -1135 5224 5030 * 43883 32 21 1 chrX 12483435 12488825 -164485315 - L1PA2 LINE L1 -9 6146 621 5495 15 0 3 chrX 12488825 12489419 -164484721 - L1PA2 LINE L1 0 6155 5564 43883 32 21 1 chrX 12489419 12490051 -164484089 - L1PA2 LINE L1 -5534 621 3 268 32 0 0 chrX 12490154 12490185 -164483955 + U2 snRNA snRNA 6 36 -152 3282 237 48 21 chrX 12490190 12491183 -164482957 - L1MD2 LINE L1 -1186 4960 3941 1379 164 0 0 chrX 12491183 12491403 -164482737 + AluJb SINE Alu 86 305 -7 2400 158 92 13 chrX 12491682 12492130 -164482010 - MLT1D LTR MaLR -2 503 21 321 316 43 8 chrX 12492196 12492313 -164481827 + MIR SINE MIR 20 140 -122 890 278 91 25 chrX 12492417 12492781 -164481359 + MLT1J1 LTR MaLR 46 433 -13 530 130 130 0 chrX 12492909 12493009 -164481131 - MER5A DNA MER1_type 0 189 77 2799 157 0 2 chrX 12493013 12493465 -164480675 - MER41B LTR ERV1 0 635 185 1069 41 0 14 chrX 12493471 12493616 -164480524 + (TTC)n Simple_repeat Simple_repeat 1 143 0 28 50 0 17 chrX 12493634 12493666 -164480474 + AT_rich Low_complexity Low_complexity 1 33 -26 2228 93 0 0 chrX 12493666 12493945 -164480195 + AluSx SINE Alu 14 292 -20 28 50 0 17 chrX 12493945 12493972 -164480168 + AT_rich Low_complexity Low_complexity 33 59 0 2363 77 24 0 chrX 12493972 12494310 -164479830 - L1PA14 LINE L1 -4 6157 5654 1275 104 6 0 chrX 12494310 12494492 -164479648 - MER41B LTR ERV1 -452 183 1 335 278 8 87 chrX 12494532 12494658 -164479482 + L2 LINE L2 3136 3251 -21 881 209 16 33 chrX 12496752 12496934 -164477206 + AluJo SINE Alu 115 293 -19 1604 182 61 73 chrX 12497244 12497639 -164476501 + MLT1B LTR MaLR 1 390 0 2178 61 2 1 chrX 12498013 12498521 -164475619 + MER41A LTR ERV1 1 554 0 459 281 170 7 chrX 12498578 12498731 -164475409 + MER5A DNA MER1_type 9 186 -3 432 196 72 0 chrX 12499788 12499885 -164474255 + MER5A DNA MER1_type 9 112 -77 861 204 17 28 chrX 12500074 12500250 -164473890 + MER5B DNA MER1_type 1 174 -4 2152 215 26 49 chrX 12500614 12501144 -164472996 + L1M2b LINE L1 1 518 -6691 * 5680 134 16 1 chrX 12501143 12502198 -164471942 + L1M2 LINE L1 4477 5549 -743 367 269 0 0 chrX 12502602 12502680 -164471460 + MLT1J LTR MaLR 6 83 -428 2212 163 79 3 chrX 12502685 12503053 -164471087 - MSTD LTR MaLR 0 396 1 375 256 69 13 chrX 12503055 12503289 -164470851 + MLT1J LTR MaLR 83 466 -33 24 0 0 0 chrX 12503555 12503579 -164470561 + AT_rich Low_complexity Low_complexity 1 24 0 951 193 50 6 chrX 12503871 12504052 -164470088 + MER5A DNA MER1_type 1 189 0 623 204 190 32 chrX 12504231 12504452 -164469688 + MIR SINE MIR 2 257 -5 493 54 14 14 chrX 12504471 12504545 -164469595 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 4031 194 34 16 chrX 12504993 12505830 -164468310 - L1MB7 LINE L1 0 6184 5333 1551 150 143 8 chrX 12506779 12507045 -164467095 - AluJb SINE Alu 0 302 1 21 0 0 0 chrX 12507265 12507286 -164466854 + AT_rich Low_complexity Low_complexity 1 21 0 321 354 76 78 chrX 12507476 12507922 -164466218 - L2 LINE L2 -3 3269 2825 1194 105 6 6 chrX 12509014 12509176 -164464964 - THE1B LTR MaLR 0 364 203 4540 126 16 125 chrX 12509176 12510723 -164463417 - pTR5 LTR ERV1 0 2606 1524 1303 112 0 11 chrX 12510723 12510911 -164463229 - THE1B LTR MaLR -162 202 17 330 214 41 41 chrX 12510930 12511028 -164463112 - L1MC4 LINE L1 -3 8039 7942 1847 208 42 9 chrX 12511140 12511569 -164462571 - L1MC4 LINE L1 -138 7904 7462 324 295 67 9 chrX 12512247 12512352 -164461788 - L2 LINE L2 -1 3271 3161 985 234 148 36 chrX 12512784 12513168 -164460972 + MLT1J2 LTR MaLR 1 427 -23 319 252 43 79 chrX 12513207 12513346 -164460794 + MIR SINE MIR 73 206 -56 447 282 220 14 chrX 12513760 12513969 -164460171 - MIR SINE MIR -1 261 10 209 277 191 21 chrX 12514896 12515037 -164459103 - MIR SINE MIR -70 192 28 27 0 0 0 chrX 12515519 12515546 -164458594 + AT_rich Low_complexity Low_complexity 1 27 0 516 143 0 0 chrX 12515889 12515973 -164458167 - L1MA9 LINE L1 -41 6271 6188 294 216 155 21 chrX 12516871 12516968 -164457172 - L2 LINE L2 0 3313 3204 2586 71 0 0 chrX 12517023 12517334 -164456806 - AluY SINE Alu 0 311 1 459 0 0 0 chrX 12517682 12517733 -164456407 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 777 271 10 10 chrX 12519304 12519503 -164454637 - MIR SINE MIR -62 200 2 247 294 33 22 chrX 12521126 12521218 -164452922 + MIR SINE MIR 96 188 -74 2381 216 110 30 chrX 12522869 12523054 -164451086 + L1MC4a LINE L1 7136 7305 -503 26416 32 0 2 chrX 12523054 12526816 -164447324 + L1PA5 LINE L1 2394 6153 -1 2381 216 110 30 chrX 12526816 12527281 -164446859 + L1MC4a LINE L1 7305 7808 0 200 183 0 17 chrX 12527932 12527992 -164446148 + CT-rich Low_complexity Low_complexity 2 60 0 463 61 0 202 chrX 12528459 12528558 -164445582 + MADE1 DNA Mariner 2 80 0 382 328 11 40 chrX 12529213 12529387 -164444753 + MER5A DNA MER1_type 19 187 -2 899 277 41 4 chrX 12529452 12529694 -164444446 - MIR SINE MIR -10 252 2 490 274 22 30 chrX 12529893 12530028 -164444112 + MIR SINE MIR 1 134 -128 1373 253 31 3 chrX 12530942 12531294 -164442846 + L1ME3A LINE L1 5809 6170 0 1431 276 30 45 chrX 12531439 12531910 -164442230 - LTR16B LTR ERVL 0 464 1 3913 90 4 8 chrX 12532333 12532842 -164441298 - L1PA11 LINE L1 -8 6166 5660 693 154 77 0 chrX 12533112 12533229 -164440911 + L1MDb LINE L1 9 134 -6275 1957 187 42 23 chrX 12533238 12533666 -164440474 + L1MC3 LINE L1 7325 7760 -25 640 176 110 0 chrX 12533677 12533813 -164440327 - MLT-int LTR MaLR -1106 629 479 24 0 0 0 chrX 12533813 12533837 -164440303 + AT_rich Low_complexity Low_complexity 1 24 0 1923 167 0 0 chrX 12533837 12534125 -164440015 + AluJb SINE Alu 2 289 -23 844 238 36 60 chrX 12536214 12536495 -164437645 - MLT1H LTR MaLR -247 302 29 2374 158 10 18 chrX 12536568 12536961 -164437179 - MLT1B LTR MaLR 0 390 1 1361 248 114 11 chrX 12538725 12539277 -164434863 - L1MC4a LINE L1 -1598 6210 5602 1223 121 0 0 chrX 12539284 12539449 -164434691 - AluJo SINE Alu -15 297 133 281 169 0 0 chrX 12539449 12539508 -164434632 + (TA)n Simple_repeat Simple_repeat 2 60 0 1021 116 0 0 chrX 12539508 12539637 -164434503 - AluJo SINE Alu -173 129 1 398 179 8 137 chrX 12539637 12539754 -164434386 - L1MC4a LINE L1 -2202 5606 5505 2078 108 3 29 chrX 12539910 12540225 -164433915 - AluSx SINE Alu -5 307 1 439 250 25 17 chrX 12540250 12540370 -164433770 - L1ME3A LINE L1 -44 6126 6006 1005 226 58 11 chrX 12540450 12540711 -164433429 - L1ME3A LINE L1 -200 5970 5698 850 177 25 13 chrX 12540725 12540883 -164433257 - MLT1D LTR MaLR -345 160 1 6023 115 24 17 chrX 12540937 12542120 -164432020 + L1PA16 LINE L1 4975 6166 0 320 329 81 12 chrX 12543310 12543471 -164430669 + L3 LINE CR1 550 721 -856 201 74 0 0 chrX 12543650 12543677 -164430463 + (GA)n Simple_repeat Simple_repeat 2 28 0 2791 90 8 19 chrX 12544004 12544372 -164429768 - THE1B LTR MaLR 0 364 1 255 196 19 131 chrX 12544401 12544508 -164429632 - MER103 DNA DNA -2 164 70 1453 257 19 6 chrX 12544529 12544840 -164429300 - MLT1I LTR MaLR 0 409 95 898 317 105 17 chrX 12544907 12545272 -164428868 + L2 LINE L2 2782 3201 -112 183 100 0 0 chrX 12545272 12545302 -164428838 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 898 317 105 17 chrX 12545302 12545424 -164428716 + L2 LINE L2 3201 3311 -2 1045 219 60 8 chrX 12545439 12545704 -164428436 - L1MC5 LINE L1 -33 7928 7650 253 276 238 0 chrX 12545772 12545877 -164428263 - L2 LINE L2 -13 3300 3171 862 242 10 25 chrX 12546183 12546381 -164427759 - MER91A DNA MER1_type -1 195 1 1784 159 0 33 chrX 12547138 12547472 -164426668 + MER33 DNA MER1_type 2 324 0 1873 174 0 22 chrX 12548085 12548396 -164425744 + AluJb SINE Alu 1 304 -8 531 259 53 42 chrX 12548490 12548679 -164425461 - MIR SINE MIR -52 210 20 304 315 15 46 chrX 12548933 12549063 -164425077 + MIR SINE MIR 87 212 -50 374 289 42 48 chrX 12549349 12549660 -164424480 + L1M4 LINE L1 4410 4718 -1428 631 276 96 48 chrX 12549692 12549964 -164424176 + MLT1H LTR MaLR 23 307 -242 417 211 94 23 chrX 12550016 12550144 -164423996 + MLT1H LTR MaLR 410 546 -3 420 169 136 93 chrX 12551954 12552072 -164422068 + HsTC2 DNA Tc2 29 151 -1747 808 235 25 48 chrX 12552074 12552398 -164421742 + HsTC2 DNA Tc2 1235 1776 -122 296 290 131 28 chrX 12552972 12553117 -164421023 + MIR SINE MIR 92 251 -11 1235 132 107 43 chrX 12554146 12554427 -164419713 + MER33 DNA MER1_type 21 319 -5 211 294 96 64 chrX 12554490 12554681 -164419459 + MIR SINE MIR 23 219 -43 310 342 9 0 chrX 12554786 12554897 -164419243 - MIR SINE MIR -4 258 147 601 249 30 24 chrX 12554905 12555074 -164419066 + MIR SINE MIR 2 171 -91 349 309 18 18 chrX 12555284 12555394 -164418746 - MIR SINE MIR -78 130 21 539 239 63 13 chrX 12555468 12555627 -164418513 - MLT1H LTR MaLR -382 167 1 206 296 19 0 chrX 12555946 12556000 -164418140 + MIR SINE MIR 24 78 -130 521 217 75 19 chrX 12556005 12556164 -164417976 + MLT1H LTR MaLR 2 137 -272 278 108 0 154 chrX 12556387 12556452 -164417688 + MLT1H LTR MaLR 492 546 -3 327 290 37 9 chrX 12556454 12556561 -164417579 + MIR3 SINE MIR 77 186 -22 280 317 21 0 chrX 12557488 12557596 -164416544 + L1MC/D LINE L1 5669 5778 -343 769 265 51 43 chrX 12557608 12557865 -164416275 + MIR SINE MIR 4 262 0 1285 242 144 31 chrX 12557903 12558383 -164415757 - MLT1H1 LTR MaLR -11 544 11 269 260 31 0 chrX 12558458 12558554 -164415586 + (TA)n Simple_repeat Simple_repeat 2 100 0 342 293 245 20 chrX 12559878 12560025 -164414115 - MIR3 SINE MIR -11 197 18 1195 165 23 23 chrX 12560484 12560702 -164413438 + MER20 DNA MER1_type 2 219 0 219 283 17 0 chrX 12561307 12561367 -164412773 - L2 LINE L2 -233 3080 3020 724 135 0 9 chrX 12562804 12562915 -164411225 - MLT1C LTR MaLR -2 465 356 386 317 139 11 chrX 12562928 12563108 -164411032 + L2 LINE L2 2860 3062 -210 433 233 114 52 chrX 12563126 12563304 -164410836 - MLT1C LTR MaLR -115 352 158 2327 131 121 18 chrX 12563304 12563692 -164410448 - MSTA LTR MaLR 0 428 1 433 233 114 52 chrX 12563692 12563723 -164410417 - MLT1C LTR MaLR -309 158 130 2633 130 6 3 chrX 12565084 12565446 -164408694 - THE1B LTR MaLR 0 364 2 867 258 18 5 chrX 12565577 12565794 -164408346 - MIR SINE MIR -31 231 12 911 80 0 0 chrX 12567866 12567978 -164406162 + AluSg/x SINE Alu 188 299 -13 23 54 0 0 chrX 12568031 12568068 -164406072 + AT_rich Low_complexity Low_complexity 1 37 0 2409 107 24 24 chrX 12568453 12568828 -164405312 - THE1C LTR MaLR 0 375 1 1417 19 0 0 chrX 12569226 12569387 -164404753 - L1PA3 LINE L1 0 6155 5995 2229 118 3 0 chrX 12569462 12569759 -164404381 - AluSq SINE Alu -15 298 1 607 276 74 15 chrX 12569992 12570111 -164404029 + MER58C DNA MER1_type 1 138 -2282 2438 62 0 44 chrX 12570111 12570432 -164403708 + AluY SINE Alu 1 307 -4 607 276 74 15 chrX 12570432 12570515 -164403625 + MER58C DNA MER1_type 138 215 0 308 161 49 12 chrX 12571662 12571743 -164402397 + L1MA9 LINE L1 6229 6312 0 230 104 104 134 chrX 12572695 12572762 -164401378 + L1ME1 LINE L1 6097 6161 -5 2692 255 58 42 chrX 12572812 12573520 -164400620 + L1ME LINE L1 63 758 -5322 462 18 0 0 chrX 12573520 12573575 -164400565 + (CA)n Simple_repeat Simple_repeat 2 56 0 2692 255 58 42 chrX 12573575 12574259 -164399881 + L1ME LINE L1 758 1475 -4605 285 75 19 19 chrX 12574249 12574302 -164399838 + L1MA9 LINE L1 6259 6311 -1 * 968 232 101 108 chrX 12574446 12574991 -164399149 + L1ME LINE L1 1481 2028 -4233 1878 169 0 13 chrX 12574991 12575305 -164398835 + AluJb SINE Alu 1 310 -2 968 232 101 108 chrX 12575305 12575366 -164398774 + L1ME LINE L1 2028 2088 -4173 2398 99 0 0 chrX 12575366 12575669 -164398471 + AluSx SINE Alu 1 303 -9 968 232 101 108 chrX 12575669 12575824 -164398316 + L1ME LINE L1 2088 2238 -4023 273 196 0 5 chrX 12576431 12576502 -164397638 - L1MA4A LINE L1 0 6305 6238 684 124 80 0 chrX 12576717 12576830 -164397310 + FLAM_C SINE Alu 9 130 -13 2194 120 10 0 chrX 12578716 12579025 -164395115 - AluSx SINE Alu 0 312 1 29 70 0 0 chrX 12579221 12579278 -164394862 + AT_rich Low_complexity Low_complexity 1 57 0 534 163 0 0 chrX 12579995 12580093 -164394047 + C-rich Low_complexity Low_complexity 4 101 0 2041 166 0 0 chrX 12580093 12580401 -164393739 - AluSx SINE Alu -4 308 1 2177 116 0 7 chrX 12581537 12581838 -164392302 - AluSx SINE Alu -13 299 1 429 290 145 19 chrX 12582617 12582831 -164391309 + MIR SINE MIR 20 260 -2 2084 138 0 0 chrX 12583069 12583365 -164390775 - AluSx SINE Alu -16 296 1 2012 222 74 40 chrX 12583838 12584445 -164389695 - L1ME3A LINE L1 -6 6164 5537 318 327 33 7 chrX 12584447 12584600 -164389540 - L1ME LINE L1 -5218 1416 1260 4766 147 45 16 chrX 12585403 12585705 -164388435 - L1MB7 LINE L1 -8 6176 5884 2203 131 0 0 chrX 12585705 12586011 -164388129 - AluSx SINE Alu -2 310 5 4766 147 45 16 chrX 12586011 12586667 -164387473 - L1MB7 LINE L1 -300 5884 5189 1186 174 10 0 chrX 12586669 12586870 -164387270 - AluSg/x SINE Alu -2 310 108 2474 82 49 25 chrX 12586870 12587236 -164386904 + THE1C LTR MaLR 1 375 0 390 134 0 49 chrX 12587242 12587324 -164386816 - L1ME LINE L1 -5301 1241 1164 2484 66 3 10 chrX 12587324 12587627 -164386513 + AluY SINE Alu 1 301 -10 1119 147 0 0 chrX 12587627 12587784 -164386356 + AluSg/x SINE Alu 132 288 -22 5009 190 54 32 chrX 12587784 12588917 -164385223 - L1ME LINE L1 -5368 1174 17 1873 96 0 16 chrX 12590750 12590999 -164383141 + AluSq SINE Alu 41 285 -28 2295 110 3 7 chrX 12591966 12592274 -164381866 + AluSp SINE Alu 1 307 -6 372 294 135 12 chrX 12592876 12593039 -164381101 - MIR SINE MIR -72 190 8 26 0 0 0 chrX 12593512 12593538 -164380602 + AT_rich Low_complexity Low_complexity 1 26 0 1941 156 3 0 chrX 12594634 12594922 -164379218 + AluJb SINE Alu 1 289 -23 193 29 59 0 chrX 12594926 12594960 -164379180 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2016 93 93 0 chrX 12598003 12598282 -164375858 - AluSp SINE Alu -8 305 1 21 0 0 0 chrX 12598655 12598676 -164375464 + AT_rich Low_complexity Low_complexity 1 21 0 287 261 123 14 chrX 12600509 12600647 -164373493 + Charlie7 DNA MER1_type 11 163 -2449 471 178 101 71 chrX 12601247 12601358 -164372782 - MER104 DNA MER2_type -1720 178 59 2388 82 3 0 chrX 12601358 12601651 -164372489 + AluSx SINE Alu 1 294 -18 471 178 101 71 chrX 12601651 12601708 -164372432 - MER104 DNA MER2_type -1839 59 5 1519 125 0 0 chrX 12601740 12601956 -164372184 - AluSg/x SINE Alu 0 312 97 236 247 0 26 chrX 12602059 12602136 -164372004 + L2 LINE L2 3159 3233 -80 318 227 0 34 chrX 12602610 12602698 -164371442 + HsTC2 DNA Tc2 2 86 -1812 253 286 11 111 chrX 12602977 12603239 -164370901 - L2 LINE L2 -44 3228 2993 904 195 32 36 chrX 12603481 12603702 -164370438 - MLT1F1 LTR MaLR -10 557 338 517 250 66 7 chrX 12604019 12604171 -164369969 - MLT1F1 LTR MaLR -381 161 1 624 306 123 28 chrX 12604171 12604265 -164369875 + L1ME4a LINE L1 5380 5464 -657 2061 121 0 3 chrX 12604265 12604571 -164369569 + L1PA16 LINE L1 5858 6162 -4 624 306 123 28 chrX 12604571 12604946 -164369194 + L1ME4a LINE L1 5464 5894 -227 777 125 8 8 chrX 12605418 12605546 -164368594 + FLAM_A SINE Alu 1 128 -5 1756 64 8 28 chrX 12606275 12606525 -164367615 - HUERS-P1 LTR ERV1 -2627 3636 3392 487 68 11 102 chrX 12606515 12606526 -164367614 - HUERS-P1 LTR ERV1 -3142 3121 3111 * 1776 110 0 8 chrX 12606526 12606762 -164367378 - AluSx SINE Alu -73 239 6 487 68 11 102 chrX 12606762 12606838 -164367302 - HUERS-P1 LTR ERV1 -3152 3111 3042 2317 109 0 0 chrX 12606838 12607142 -164366998 - AluSx SINE Alu -8 304 1 2256 142 59 30 chrX 12610457 12610972 -164363168 + MLT2A2 LTR ERVL 3 554 0 200 273 0 13 chrX 12611516 12611593 -164362547 - MER5B DNA MER1_type -98 80 5 4286 114 23 36 chrX 12612268 12612494 -164361646 + L1PB3 LINE L1 5463 5690 -464 219 69 0 0 chrX 12612494 12612523 -164361617 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1758 107 0 41 chrX 12612529 12612772 -164361368 - AluSq SINE Alu -30 283 51 4286 114 23 36 chrX 12612772 12613114 -164361026 + L1PB3 LINE L1 5695 6030 -124 2095 115 0 0 chrX 12613114 12613384 -164360756 + AluSx SINE Alu 9 278 -34 4286 114 23 36 chrX 12613384 12613507 -164360633 + L1PB3 LINE L1 6030 6153 -1 405 0 0 0 chrX 12613955 12614000 -164360140 + (TA)n Simple_repeat Simple_repeat 1 45 0 2315 87 0 0 chrX 12614002 12614291 -164359849 - AluSg1 SINE Alu -20 289 1 536 208 10 105 chrX 12614790 12614868 -164359272 - LTR41 LTR ERVL 0 795 711 2158 133 0 0 chrX 12614868 12615169 -164358971 + AluJb SINE Alu 1 301 -11 536 208 10 105 chrX 12615169 12615367 -164358773 - LTR41 LTR ERVL -84 711 443 898 169 11 42 chrX 12615470 12615659 -164358481 - LTR41 LTR ERVL -590 183 1 1972 119 20 3 chrX 12616154 12616457 -164357683 + L1PA16 LINE L1 5716 6023 -143 221 206 0 15 chrX 12616912 12616980 -164357160 + (TA)n Simple_repeat Simple_repeat 2 68 0 203 59 0 29 chrX 12618041 12618075 -164356065 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1850 155 0 0 chrX 12618077 12618373 -164355767 - AluJb SINE Alu -6 306 11 2200 104 10 0 chrX 12619117 12619426 -164354714 - AluSx SINE Alu 0 312 1 1893 143 16 0 chrX 12619874 12620056 -164354084 - AluJb SINE Alu 0 312 121 252 0 0 0 chrX 12620056 12620084 -164354056 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1893 143 16 0 chrX 12620084 12620208 -164353932 - AluJb SINE Alu -191 121 1 315 333 17 17 chrX 12620376 12620496 -164353644 - MIR SINE MIR -57 151 32 180 111 0 0 chrX 12621061 12621088 -164353052 + (CATA)n Simple_repeat Simple_repeat 3 29 0 548 274 13 0 chrX 12621840 12621997 -164352143 + L1ME4a LINE L1 4210 4368 -1778 1539 196 79 25 chrX 12622249 12622565 -164351575 - MER58B DNA MER1_type -8 333 1 1099 166 38 19 chrX 12622670 12622881 -164351259 + L1MB4 LINE L1 5948 6162 -18 387 271 32 7 chrX 12622881 12623036 -164351104 + L1ME4a LINE L1 5703 5861 -260 2191 101 44 0 chrX 12623167 12623465 -164350675 - AluSx SINE Alu -1 311 1 1245 228 87 21 chrX 12623472 12623745 -164350395 - L1ME3A LINE L1 -5 6165 5859 739 187 8 0 chrX 12623745 12623868 -164350272 - FLAM_A SINE Alu -9 124 1 1245 228 87 21 chrX 12623868 12623972 -164350168 - L1ME3A LINE L1 -311 5859 5763 1906 161 0 22 chrX 12624061 12624377 -164349763 - AluJo SINE Alu -3 309 1 186 229 0 0 chrX 12624825 12624860 -164349280 - L3 LINE CR1 -13 1564 1530 * 260 281 178 15 chrX 12624831 12624966 -164349174 - MIR3 SINE MIR -23 185 29 2147 190 78 60 chrX 12625508 12625608 -164348532 - L1ME2 LINE L1 0 6164 6067 2417 82 0 13 chrX 12625608 12625914 -164348226 + AluSx SINE Alu 1 302 -10 2147 190 78 60 chrX 12625914 12626209 -164347931 - L1ME2 LINE L1 -97 6067 5752 2304 104 0 0 chrX 12626209 12626506 -164347634 - AluSx SINE Alu -15 297 1 2147 190 78 60 chrX 12626506 12626724 -164347416 - L1ME2 LINE L1 -412 5752 5539 183 244 183 12 chrX 12626838 12626920 -164347220 + MIR SINE MIR 68 163 -99 22 80 0 0 chrX 12626994 12627044 -164347096 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chrX 12627133 12627155 -164346985 + AT_rich Low_complexity Low_complexity 1 22 0 4908 209 23 42 chrX 12627972 12629199 -164344941 - L1MC4a LINE L1 0 7808 6605 24 0 0 0 chrX 12629419 12629443 -164344697 + AT_rich Low_complexity Low_complexity 1 24 0 2078 117 3 0 chrX 12629518 12629801 -164344339 - AluY SINE Alu -27 284 1 2434 80 0 0 chrX 12629971 12630270 -164343870 - AluSq SINE Alu -14 299 1 386 266 56 79 chrX 12631511 12631815 -164342325 + L2 LINE L2 2812 3108 -164 609 254 52 17 chrX 12631927 12632100 -164342040 - MIR SINE MIR -79 183 5 852 200 61 11 chrX 12632103 12632283 -164341857 - MER5A DNA MER1_type 0 189 1 300 285 19 82 chrX 12632318 12632381 -164341759 + L2 LINE L2 3125 3190 -82 1698 149 3 122 chrX 12632381 12632724 -164341416 - AluSq SINE Alu 0 303 2 300 285 19 82 chrX 12632724 12632818 -164341322 + L2 LINE L2 3190 3272 0 713 157 58 0 chrX 12634590 12634711 -164339429 - L1MD1 LINE L1 0 6242 6115 2950 195 31 29 chrX 12634712 12635265 -164338875 - L1MD2 LINE L1 -200 6159 5603 439 110 0 90 chrX 12635265 12635301 -164338839 - L1MA10 LINE L1 0 6334 6296 1502 179 85 48 chrX 12635301 12635653 -164338487 - MLT1A1 LTR MaLR 0 365 1 439 110 0 90 chrX 12635653 12635716 -164338424 - L1MA10 LINE L1 -38 6296 6244 2950 195 31 29 chrX 12635716 12635813 -164338327 - L1MD2 LINE L1 -756 5603 5508 933 189 34 13 chrX 12635814 12636052 -164338088 - L1MDa LINE L1 -4451 2089 1847 2185 102 3 3 chrX 12636215 12636509 -164337631 + AluSq SINE Alu 2 295 -18 2509 82 0 6 chrX 12636580 12636895 -164337245 - AluSp SINE Alu 0 313 1 4208 174 21 41 chrX 12636933 12637476 -164336664 - L1MD2 LINE L1 -2 6357 5837 2396 113 0 0 chrX 12637476 12637786 -164336354 - AluSx SINE Alu -2 310 1 4208 174 21 41 chrX 12637786 12638112 -164336028 - L1MD2 LINE L1 -522 5837 5506 479 253 109 23 chrX 12638112 12638333 -164335807 - L1MDa LINE L1 -4452 2088 1849 727 179 62 0 chrX 12638369 12638514 -164335626 - L1MD1 LINE L1 -5 6237 6084 623 284 27 61 chrX 12638528 12638789 -164335351 - L1MD2 LINE L1 -214 6539 6288 8071 29 0 2 chrX 12638791 12640079 -164334061 - L1PA3 LINE L1 0 6155 4867 1332 57 0 0 chrX 12640098 12640255 -164333885 - THE1A LTR MaLR -198 157 1 3265 188 71 33 chrX 12640540 12640555 -164333585 - L1MD2 LINE L1 -1 6358 6345 2282 104 3 0 chrX 12640555 12640854 -164333286 - AluSx SINE Alu -12 300 1 3265 188 71 33 chrX 12640854 12641658 -164332482 - L1MD2 LINE L1 -14 6345 5508 2232 106 10 10 chrX 12641677 12641989 -164332151 - AluSx SINE Alu 0 312 1 270 156 52 13 chrX 12641999 12642076 -164332064 - L1MDa LINE L1 -4463 2077 1998 276 30 0 0 chrX 12642076 12642109 -164332031 + (TCCC)n Simple_repeat Simple_repeat 3 35 0 466 251 36 41 chrX 12642113 12642138 -164332002 - L1MDa LINE L1 -4506 2034 2010 1558 167 22 7 chrX 12642138 12642408 -164331732 - AluJo SINE Alu -38 274 1 466 251 36 41 chrX 12642408 12642577 -164331563 - L1MDa LINE L1 -4530 2010 1841 2413 206 69 53 chrX 12642793 12642999 -164331141 - L1MD2 LINE L1 0 6359 6158 315 0 0 0 chrX 12642999 12643034 -164331106 + (TG)n Simple_repeat Simple_repeat 2 36 0 2413 206 69 53 chrX 12643034 12643522 -164330618 - L1MD2 LINE L1 -201 6158 5654 1634 188 23 46 chrX 12643520 12644117 -164330023 - L1MD2 LINE L1 -526 6227 1842 * 1139 254 38 0 chrX 12644328 12644643 -164329497 - L1MD2 LINE L1 0 6753 6427 306 0 0 0 chrX 12644643 12644677 -164329463 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1974 114 0 35 chrX 12644679 12644968 -164329172 - AluSx SINE Alu -29 283 5 227 53 0 26 chrX 12644977 12645015 -164329125 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 942 121 0 0 chrX 12645017 12645149 -164328991 - AluSq/x SINE Alu -181 132 1 1961 195 5 5 chrX 12645177 12645546 -164328594 - L1MD2 LINE L1 -483 6270 5902 882 222 17 4 chrX 12645547 12645786 -164328354 - L1MD2 LINE L1 -4451 2089 1848 1177 206 30 33 chrX 12646007 12646308 -164327832 - L1MD2 LINE L1 -1 6358 6059 * 1890 164 6 15 chrX 12646296 12646625 -164327515 - L1MD2 LINE L1 -528 5831 5506 1016 213 8 4 chrX 12646622 12646866 -164327274 - L1MDa LINE L1 -4449 2091 1847 * 4047 187 60 42 chrX 12647055 12647206 -164326934 - L1MD2 LINE L1 -57 6302 6155 273 29 0 0 chrX 12647206 12647240 -164326900 + (TG)n Simple_repeat Simple_repeat 1 34 0 243 0 0 0 chrX 12647239 12647266 -164326874 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 4047 187 60 42 chrX 12647240 12647943 -164326197 - L1MD2 LINE L1 -204 6155 5450 1877 78 0 16 chrX 12647943 12648187 -164325953 - AluSc SINE Alu -16 293 54 4047 187 60 42 chrX 12648187 12648371 -164325769 - L1MD2 LINE L1 -909 5450 5271 17255 131 28 36 chrX 12648371 12648498 -164325642 - L1 LINE L1 -2241 5324 5197 1565 172 22 11 chrX 12648498 12648766 -164325374 - AluJo SINE Alu -26 286 16 17255 131 28 36 chrX 12648766 12648789 -164325351 - L1 LINE L1 -2368 5197 5175 2287 100 0 3 chrX 12648789 12649088 -164325052 - AluSg SINE Alu -12 298 1 17255 131 28 36 chrX 12649088 12649614 -164324526 - L1 LINE L1 -2390 5175 4646 400 21 0 0 chrX 12649614 12649662 -164324478 - L1PA6 LINE L1 0 6154 6107 17255 131 28 36 chrX 12649662 12651024 -164323116 - L1 LINE L1 -2919 4646 3274 1935 148 0 20 chrX 12651024 12651328 -164322812 - AluJb SINE Alu -14 298 1 17255 131 28 36 chrX 12651328 12651529 -164322611 - L1 LINE L1 -4291 3274 3073 2198 113 0 0 chrX 12651529 12651831 -164322309 - AluSq SINE Alu -11 302 1 17255 131 28 36 chrX 12651831 12652429 -164321711 - L1 LINE L1 -4492 3073 2472 1932 143 0 7 chrX 12652429 12652760 -164321380 - AluSx SINE Alu 0 329 1 17255 131 28 36 chrX 12652760 12653515 -164320625 - L1 LINE L1 -5093 2472 1773 2361 90 0 0 chrX 12653515 12653805 -164320335 - AluSx SINE Alu -20 292 3 17255 131 28 36 chrX 12653805 12654475 -164319665 - L1 LINE L1 -5792 1773 1099 602 124 86 9 chrX 12654472 12654577 -164319563 - L1 LINE L1 -7432 133 21 * 2512 211 24 44 chrX 12654592 12654937 -164319203 - L1MDa LINE L1 -3219 3321 2971 2254 119 0 6 chrX 12654937 12655249 -164318891 - AluSx SINE Alu -2 310 1 2512 211 24 44 chrX 12655249 12655545 -164318595 - L1MDa LINE L1 -3569 2971 2695 1753 172 197 11 chrX 12655545 12655906 -164318234 - MSTA LTR MaLR 0 428 1 2512 211 24 44 chrX 12655906 12656011 -164318129 - L1MDa LINE L1 -3845 2695 2589 1570 209 119 5 chrX 12656030 12656475 -164317665 - L1MDa LINE L1 -3928 2612 2117 1232 164 0 0 chrX 12656512 12656707 -164317433 - L1MC/D LINE L1 -537 5822 5628 23 0 0 0 chrX 12656766 12656789 -164317351 + AT_rich Low_complexity Low_complexity 1 23 0 1063 171 40 44 chrX 12656838 12656962 -164317178 - L1MDa LINE L1 -4437 2103 1980 1778 148 41 0 chrX 12656962 12657233 -164316907 + AluSq SINE Alu 31 312 -1 1063 171 40 44 chrX 12657233 12657360 -164316780 - L1MDa LINE L1 -4560 1980 1853 461 252 8 8 chrX 12657625 12657744 -164316396 - MIR SINE MIR -4 258 140 2106 146 0 0 chrX 12657818 12658112 -164316028 - AluSx SINE Alu -18 294 1 258 175 0 0 chrX 12658282 12658322 -164315818 - MER58A DNA MER1_type 0 224 185 375 322 63 0 chrX 12658325 12658468 -164315672 - MER58A DNA MER1_type 0 154 3 1754 142 64 17 chrX 12658543 12658838 -164315302 + AluJo SINE Alu 1 309 -3 377 257 115 0 chrX 12658854 12658967 -164315173 + L1ME4a LINE L1 5512 5637 -484 775 286 68 0 chrX 12659116 12659350 -164314790 + MIR SINE MIR 2 251 -11 283 151 226 19 chrX 12659411 12659517 -164314623 + L1ME4a LINE L1 5853 5980 -141 512 241 78 78 chrX 12659535 12659780 -164314360 + MIR SINE MIR 15 259 -3 192 77 0 0 chrX 12660728 12660754 -164313386 + (A)n Simple_repeat Simple_repeat 1 26 0 512 339 122 4 chrX 12660913 12661158 -164312982 - L2 LINE L2 -55 3217 2944 1877 160 0 7 chrX 12661316 12661610 -164312530 - AluJo SINE Alu -20 292 1 189 0 0 0 chrX 12661617 12661638 -164312502 + (T)n Simple_repeat Simple_repeat 1 21 0 242 254 30 0 chrX 12663025 12663092 -164311048 + MER5A DNA MER1_type 9 77 -112 184 296 0 0 chrX 12663138 12663182 -164310958 + MER5A DNA MER1_type 145 188 -1 606 234 10 88 chrX 12663191 12663383 -164310757 - MER5B DNA MER1_type 0 178 2 352 136 12 49 chrX 12664019 12664100 -164310040 + L1MC5 LINE L1 7833 7910 -51 192 156 44 22 chrX 12664300 12664345 -164309795 + L2 LINE L2 3223 3268 -4 2296 90 3 7 chrX 12665301 12665591 -164308549 - AluSx SINE Alu -18 294 6 38 61 0 0 chrX 12665856 12665922 -164308218 + AT_rich Low_complexity Low_complexity 1 66 0 1720 194 0 7 chrX 12666363 12666662 -164307478 + AluJb SINE Alu 1 297 -15 509 231 103 62 chrX 12667677 12667919 -164306221 + MER112 DNA MER1_type 8 259 -1 237 83 0 0 chrX 12668825 12668861 -164305279 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 787 179 0 93 chrX 12668861 12669023 -164305117 - FRAM SINE Alu -19 147 1 324 241 241 25 chrX 12669024 12669182 -164304958 - L1ME3A LINE L1 -224 5946 5755 604 331 108 10 chrX 12669423 12669728 -164304412 - L3 LINE CR1 -3 1574 1240 1956 129 13 19 chrX 12670141 12670452 -164303688 + AluJb SINE Alu 1 309 -3 211 296 0 0 chrX 12670453 12670507 -164303633 - L3 LINE CR1 -646 931 878 27 0 0 0 chrX 12670572 12670599 -164303541 + AT_rich Low_complexity Low_complexity 1 27 0 2058 155 10 3 chrX 12670698 12671008 -164303132 - AluJb SINE Alu 0 312 1 1605 148 0 16 chrX 12671102 12671358 -164302782 - AluJb SINE Alu -16 296 45 246 239 0 15 chrX 12671540 12671607 -164302533 + MER103 DNA DNA 57 122 -44 495 343 22 27 chrX 12671717 12672089 -164302051 - L3 LINE CR1 -788 789 345 2198 113 0 7 chrX 12673684 12673985 -164300155 + AluSx SINE Alu 3 301 -11 435 136 0 0 chrX 12674156 12674237 -164299903 + L1MA7 LINE L1 6211 6291 0 592 239 0 75 chrX 12674450 12674676 -164299464 + MER3 DNA MER1_type 1 209 0 338 145 0 16 chrX 12674770 12674832 -164299308 - FLAM_A SINE Alu -10 123 63 34 24 0 0 chrX 12676037 12676078 -164298062 + AT_rich Low_complexity Low_complexity 1 41 0 1926 158 0 3 chrX 12676080 12676377 -164297763 - AluJo SINE Alu -16 296 1 242 125 25 0 chrX 12676539 12676579 -164297561 - MER45 DNA AcHobo 0 1581 1541 843 199 65 5 chrX 12676618 12676834 -164297306 - L1MD3 LINE L1 -8 7987 7759 1873 209 45 24 chrX 12776834 12777299 -164196841 - MLT1F LTR MaLR -67 475 1 988 269 154 18 chrX 12778789 12779346 -164194794 + L1MC4a LINE L1 5299 5931 -1877 431 229 46 69 chrX 12779982 12780200 -164193940 + L1M4 LINE L1 3998 4210 -1936 825 186 14 7 chrX 12780212 12780352 -164193788 + FRAM SINE Alu 4 144 -32 2403 81 0 28 chrX 12780453 12780773 -164193367 - AluY SINE Alu 0 311 1 797 174 20 45 chrX 12781110 12781311 -164192829 - L1MEc LINE L1 -6165 231 36 1485 132 54 29 chrX 12781461 12781703 -164192437 + AluJo SINE Alu 51 298 -14 189 107 0 0 chrX 12781900 12781928 -164192212 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 1319 170 30 43 chrX 12781928 12782029 -164192111 + L1MB2 LINE L1 5874 5975 -196 1863 116 112 7 chrX 12782029 12782305 -164191835 + AluSx SINE Alu 1 305 -7 1319 170 30 43 chrX 12782305 12782503 -164191637 + L1MB2 LINE L1 5975 6169 -2 949 155 80 9 chrX 12782533 12782746 -164191394 - MER33 DNA MER1_type -96 228 1 529 228 81 75 chrX 12782910 12783243 -164190897 - L1ME2 LINE L1 -48 6116 5782 1722 179 0 0 chrX 12783246 12783514 -164190626 + AluJb SINE Alu 1 268 -44 243 61 0 0 chrX 12784622 12784655 -164189485 + (TG)n Simple_repeat Simple_repeat 1 33 0 939 190 3 58 chrX 12784784 12785079 -164189061 - L1MCa LINE L1 -2906 3223 2945 * 1807 216 6 9 chrX 12785076 12785521 -164188619 - L1MCa LINE L1 -3624 2505 2061 388 219 84 51 chrX 12785567 12785804 -164188336 - L1MCa LINE L1 -4217 1914 1670 229 177 38 38 chrX 12785807 12785886 -164188254 - L1MCa LINE L1 -4559 1572 1494 207 0 0 0 chrX 12787413 12787436 -164186704 + (CA)n Simple_repeat Simple_repeat 2 24 0 1348 274 104 20 chrX 12787683 12788685 -164185455 - L1MEc LINE L1 -2167 3962 2877 555 273 102 35 chrX 12788685 12789144 -164184996 - L1MEc LINE L1 -4525 1609 1171 419 282 52 65 chrX 12789158 12789360 -164184780 - L1MEc LINE L1 -5072 1047 847 2800 7 0 3 chrX 12789360 12789670 -164184470 - AluYa5 SINE Alu -2 309 1 419 282 52 65 chrX 12789670 12789715 -164184425 - L1MEc LINE L1 -5272 847 803 381 323 66 15 chrX 12789729 12789927 -164184213 - L1MEc LINE L1 -5369 750 543 392 253 212 0 chrX 12790092 12790238 -164183902 + HAL1 LINE L1 151 327 -2180 3005 230 81 98 chrX 12790625 12792369 -164181771 + HAL1 LINE L1 489 2203 -304 306 0 0 0 chrX 12792847 12792881 -164181259 + (TA)n Simple_repeat Simple_repeat 1 34 0 181 279 0 59 chrX 12793002 12793070 -164181070 + L2 LINE L2 3225 3288 -25 22 0 0 0 chrX 12793090 12793112 -164181028 + AT_rich Low_complexity Low_complexity 1 22 0 323 280 18 73 chrX 12794505 12794658 -164179482 - MIR3 SINE MIR -17 191 44 3844 181 32 21 chrX 12794937 12795504 -164178636 + L1MB7 LINE L1 4766 5325 -859 2266 116 48 22 chrX 12795504 12795859 -164178281 + THE1B LTR MaLR 1 364 0 3844 181 32 21 chrX 12795859 12796646 -164177494 + L1MB7 LINE L1 5325 6144 -40 204 267 0 0 chrX 12797234 12797279 -164176861 + L2 LINE L2 3263 3307 -6 384 142 66 85 chrX 12797467 12797536 -164176604 + L1MC5 LINE L1 7130 7198 -763 691 218 213 6 chrX 12797536 12797710 -164176430 - MER63A DNA MER1_type 0 210 1 384 142 66 85 chrX 12797710 12797746 -164176394 + L1MC5 LINE L1 7198 7233 -728 1142 209 89 38 chrX 12797790 12798382 -164175758 + L1MC5 LINE L1 7261 7791 -170 4329 168 47 13 chrX 12798520 12800281 -164173859 + L1MB7 LINE L1 4395 6209 0 2506 69 0 7 chrX 12800762 12801068 -164173072 + AluY SINE Alu 1 304 -7 373 209 101 0 chrX 12801422 12801551 -164172589 - L1MC4a LINE L1 -1905 5903 5762 277 239 94 36 chrX 12801728 12801866 -164172274 + MLT1J LTR MaLR 39 184 -327 337 270 103 28 chrX 12803336 12803658 -164170482 + L1ME LINE L1 5335 5691 -430 287 320 104 31 chrX 12804663 12804885 -164169255 - LTR16C LTR ERVL -100 391 154 1268 132 44 13 chrX 12804940 12805167 -164168973 + MER46A DNA MER2_type 1 234 -2 435 322 78 0 chrX 12805177 12805344 -164168796 - MIR SINE MIR -57 205 27 253 259 9 56 chrX 12806037 12806145 -164167995 - L1M4c LINE L1 -4253 2393 2291 5323 193 69 68 chrX 12806174 12808061 -164166079 - L1M4c LINE L1 -4480 2166 271 314 222 0 14 chrX 12808116 12808188 -164165952 - L1M4c LINE L1 -6282 260 190 2013 206 121 43 chrX 12808378 12808959 -164165181 - MLT1E2 LTR MaLR 0 626 1 2483 218 33 126 chrX 12808959 12810092 -164164048 - MLT1E2-int LTR MaLR 0 1371 345 259 208 0 19 chrX 12810093 12810146 -164163994 + MIR SINE MIR 93 144 -64 682 251 58 1 chrX 12810442 12810658 -164163482 - MIR SINE MIR -5 257 3 285 271 0 0 chrX 12811300 12811370 -164162770 + Charlie8 DNA MER1_type 3 72 -2345 1295 243 77 23 chrX 12811441 12811972 -164162168 - L1M4 LINE L1 -889 5257 4698 278 228 220 11 chrX 12812097 12812221 -164161919 + Charlie8 DNA MER1_type 136 265 -2152 1235 130 27 63 chrX 12812455 12812678 -164161462 - MER20 DNA MER1_type -4 215 1 27 0 0 0 chrX 12812957 12812984 -164161156 + AT_rich Low_complexity Low_complexity 1 27 0 1069 167 31 13 chrX 12813504 12813731 -164160409 + MER97a DNA MER1_type? 24 254 -640 203 146 24 0 chrX 12813731 12813772 -164160368 + (TA)n Simple_repeat Simple_repeat 1 42 0 322 304 136 35 chrX 12814614 12814667 -164159473 + L2 LINE L2 2809 2855 -417 2683 119 46 7 chrX 12814667 12815079 -164159061 + MSTC LTR MaLR 1 428 0 322 304 136 35 chrX 12815079 12815282 -164158858 + L2 LINE L2 2855 3091 -181 505 234 113 0 chrX 12815317 12815441 -164158699 + MLT1J2 LTR MaLR 20 157 -293 391 291 113 0 chrX 12815683 12815824 -164158316 + L2 LINE L2 3097 3253 -19 325 281 70 47 chrX 12815912 12816005 -164158135 + MIR3 SINE MIR 57 155 -53 975 193 16 11 chrX 12816005 12816192 -164157948 - MER5A DNA MER1_type 0 189 2 325 281 70 47 chrX 12816192 12816226 -164157914 + MIR3 SINE MIR 155 187 -21 252 339 76 53 chrX 12819188 12819359 -164154781 + MIR3 SINE MIR 21 195 -13 2292 98 3 0 chrX 12820421 12820716 -164153424 + AluSx SINE Alu 1 296 -16 1969 296 62 26 chrX 12823531 12823889 -164150251 - L2 LINE L2 -189 3124 2780 2635 58 0 0 chrX 12823889 12824199 -164149941 - AluY SINE Alu -1 310 1 1969 296 62 26 chrX 12824199 12824774 -164149366 - L2 LINE L2 -533 2780 2159 526 291 51 15 chrX 12824775 12824971 -164149169 + HAL1 LINE L1 4 206 -2301 2919 187 13 19 chrX 12824974 12825499 -164148641 - ERVL LTR ERVL -3551 2213 1692 1862 249 122 30 chrX 12825499 12826171 -164147969 + HAL1 LINE L1 202 935 -1572 337 23 45 0 chrX 12826197 12826241 -164147899 + L1PA7 LINE L1 6107 6152 -2 378 221 176 100 chrX 12826242 12826703 -164147437 + HAL1 LINE L1 1000 1495 -1012 22 35 0 0 chrX 12826710 12826739 -164147401 + AT_rich Low_complexity Low_complexity 1 29 0 3552 205 83 15 chrX 12826768 12828221 -164145919 - L1MD2 LINE L1 -249 6110 4540 2519 209 84 24 chrX 12828192 12828861 -164145279 + L1ME2 LINE L1 5323 6031 -133 * 650 193 9 0 chrX 12828961 12829070 -164145070 - AluJb SINE Alu -202 110 1 791 242 36 59 chrX 12831613 12831832 -164142308 - MIR SINE MIR -14 248 35 397 267 17 0 chrX 12832686 12832802 -164141338 - MER103 DNA DNA -45 121 4 4107 104 2 21 chrX 12832825 12833105 -164141035 + L1P LINE L1 4294 4578 -1568 2372 81 0 3 chrX 12833105 12833403 -164140737 - AluY SINE Alu -14 297 1 4107 104 2 21 chrX 12833403 12833737 -164140403 + L1P LINE L1 4578 4896 -1250 867 198 23 0 chrX 12834595 12834767 -164139373 - AluJb SINE Alu 0 312 137 2370 73 10 3 chrX 12834859 12835160 -164138980 - AluSq SINE Alu -9 304 2 1082 245 101 40 chrX 12835730 12835911 -164138229 - L2 LINE L2 -2773 541 373 762 157 70 41 chrX 12835911 12836083 -164138057 - MER5B DNA MER1_type -1 177 1 1082 245 101 40 chrX 12836083 12836326 -164137814 - L2 LINE L2 -2941 373 91 1262 154 0 96 chrX 12836946 12837130 -164137010 - MER46A DNA MER2_type -2496 235 35 1926 87 0 30 chrX 12837130 12837420 -164136720 + AluSq SINE Alu 38 313 0 2254 99 0 0 chrX 12837422 12837706 -164136434 + AluSx SINE Alu 1 284 -28 1262 154 0 96 chrX 12837706 12837778 -164136362 - MER46A DNA MER2_type -2697 34 1 255 304 95 47 chrX 12838368 12838516 -164135624 + MIR3 SINE MIR 49 203 -5 430 208 40 48 chrX 12838581 12838665 -164135475 + L1MDb LINE L1 21 105 -6304 1838 154 32 0 chrX 12838665 12838950 -164135190 - AluJo SINE Alu -18 294 1 430 208 40 48 chrX 12838950 12838990 -164135150 + L1MDb LINE L1 105 144 -6265 1965 208 58 2 chrX 12839012 12839497 -164134643 + L1M4 LINE L1 2576 3087 -3059 2180 77 3 18 chrX 12839497 12839835 -164134305 + AluY SINE Alu 1 334 0 263 241 56 63 chrX 12839910 12840133 -164134007 + L1MC4a LINE L1 7708 7807 -1 747 251 208 18 chrX 12840166 12840561 -164133579 - L2 LINE L2 -1203 2111 1642 2291 186 19 40 chrX 12840575 12841047 -164133093 + MLT1C LTR MaLR 6 467 0 181 301 19 39 chrX 12841049 12841152 -164132988 - L2 LINE L2 -1692 1622 1522 472 117 0 75 chrX 12841458 12841552 -164132588 + L1MA5A LINE L1 6211 6297 0 284 321 15 23 chrX 12842346 12842477 -164131663 - MER94 DNA DNA -1 133 4 1936 161 0 10 chrX 12842662 12842973 -164131167 + AluJo SINE Alu 1 308 -4 5048 142 35 21 chrX 12842974 12843948 -164130192 + L1MB7 LINE L1 5195 6184 0 2408 66 23 0 chrX 12845649 12845953 -164128187 + AluY SINE Alu 1 311 0 23 33 0 0 chrX 12847596 12847626 -164126514 + AT_rich Low_complexity Low_complexity 1 30 0 2300 111 0 0 chrX 12847733 12848040 -164126100 + AluSq SINE Alu 1 307 -6 188 312 138 45 chrX 12849116 12849449 -164124691 + L2 LINE L2 1829 2192 -1122 723 255 120 5 chrX 12849616 12849832 -164124308 - MIR SINE MIR -21 241 1 471 283 97 36 chrX 12849856 12850103 -164124037 - L2 LINE L2 -2 3270 3009 276 324 97 14 chrX 12850186 12850331 -164123809 - L2 LINE L2 -866 2448 2292 25 31 0 0 chrX 12851685 12851717 -164122423 + AT_rich Low_complexity Low_complexity 1 32 0 216 295 0 64 chrX 12851918 12851996 -164122144 - L2 LINE L2 0 3313 3241 1706 224 59 25 chrX 12852012 12852454 -164121686 + LTR16A1 LTR ERVL 1 457 0 1554 187 107 0 chrX 12852533 12852832 -164121308 + MLT1F1 LTR MaLR 188 518 -49 309 228 76 13 chrX 12853082 12853161 -164120979 + LTR33A LTR ERVL 440 523 0 326 398 60 5 chrX 12853164 12853380 -164120760 - L2 LINE L2 -521 2793 2566 1102 204 42 5 chrX 12853685 12853901 -164120239 - MER58A DNA MER1_type 0 224 1 460 250 59 0 chrX 12853923 12854059 -164120081 - MER103 DNA DNA -11 155 12 219 378 46 27 chrX 12854583 12854845 -164119295 + L2 LINE L2 2566 2832 -482 466 277 53 48 chrX 12854969 12855157 -164118983 + MER5A DNA MER1_type 1 189 0 195 283 0 0 chrX 12855158 12855204 -164118936 - MIR3 SINE MIR -51 157 112 2107 100 37 23 chrX 12855419 12855718 -164118422 + AluSx SINE Alu 1 303 -9 217 294 92 37 chrX 12856203 12856312 -164117828 + L2 LINE L2 3152 3266 -6 490 275 100 34 chrX 12856376 12856602 -164117538 + MIR SINE MIR 9 247 -15 2800 192 77 24 chrX 12857882 12858518 -164115622 + L1ME3A LINE L1 5495 6164 -6 1752 109 4 0 chrX 12858524 12858753 -164115387 + AluSx SINE Alu 1 230 -82 880 59 0 0 chrX 12858755 12858856 -164115284 + AluSg/x SINE Alu 194 294 -18 313 259 245 0 chrX 12859143 12859282 -164114858 - MER63A DNA MER1_type -37 173 1 373 226 0 0 chrX 12859773 12859835 -164114305 - MER58A DNA MER1_type -162 62 1 985 180 79 60 chrX 12860028 12860287 -164113853 - MIR SINE MIR -1 261 2 2421 98 0 0 chrX 12860402 12860708 -164113432 + AluSg SINE Alu 1 306 -4 861 277 4 31 chrX 12861316 12861572 -164112568 + MIR SINE MIR 1 249 -13 6268 20 0 16 chrX 12862297 12862318 -164111822 + L1PA4 LINE L1 5470 5490 -665 2911 7 0 0 chrX 12862318 12862628 -164111512 + AluYa5 SINE Alu 1 310 -1 6268 20 0 16 chrX 12862628 12863302 -164110838 + L1PA4 LINE L1 5490 6154 -1 1929 133 14 10 chrX 12864071 12864364 -164109776 + AluJb SINE Alu 6 299 -13 538 281 69 59 chrX 12864418 12864599 -164109541 + HAL1 LINE L1 1237 1415 -1092 8190 62 2 0 chrX 12864599 12865566 -164108574 + LTR5 LTR ERVK 1 969 0 538 281 69 59 chrX 12865566 12865775 -164108365 + HAL1 LINE L1 1415 1631 -876 569 244 45 0 chrX 12867286 12867462 -164106678 - L1M4 LINE L1 -2890 3256 3073 266 269 198 47 chrX 12872842 12872997 -164101143 + MIR3 SINE MIR 7 171 -61 223 310 0 14 chrX 12874249 12874320 -164099820 + MER5B DNA MER1_type 3 72 -106 270 304 11 0 chrX 12874359 12874451 -164099689 + CT-rich Low_complexity Low_complexity 4 96 0 30 0 0 0 chrX 12875369 12875399 -164098741 + AT_rich Low_complexity Low_complexity 1 30 0 399 258 11 0 chrX 12875795 12875884 -164098256 + MER5B DNA MER1_type 75 164 -14 262 301 130 30 chrX 12876125 12876336 -164097804 + MIR SINE MIR 16 241 -21 2484 54 0 3 chrX 12877092 12877386 -164096754 - AluY SINE Alu -18 293 1 1218 96 110 10 chrX 12877927 12878136 -164096004 + L1MA9 LINE L1 6082 6311 -1 222 302 60 43 chrX 12878418 12878534 -164095606 - L3b LINE CR1 -87 1496 1379 2050 105 0 0 chrX 12878534 12878800 -164095340 - AluY SINE Alu -19 292 27 4873 166 47 12 chrX 12878975 12879533 -164094607 + L1MB8 LINE L1 4456 4993 -1185 2224 96 0 0 chrX 12879533 12879850 -164094290 + AluSc SINE Alu 1 317 0 4873 166 47 12 chrX 12879850 12880803 -164093337 + L1MB8 LINE L1 4993 6178 0 261 0 0 0 chrX 12881465 12881494 -164092646 + (TG)n Simple_repeat Simple_repeat 2 30 0 207 162 0 0 chrX 12882220 12882257 -164091883 + (ATG)n Simple_repeat Simple_repeat 3 39 0 641 197 68 20 chrX 12883157 12883304 -164090836 - MIR SINE MIR -104 158 5 866 121 0 0 chrX 12883978 12884094 -164090046 + FLAM_C SINE Alu 1 116 -27 189 147 0 0 chrX 12884105 12884139 -164090001 + (CCTA)n Simple_repeat Simple_repeat 1 34 0 207 69 0 0 chrX 12884145 12884174 -164089966 + (CATA)n Simple_repeat Simple_repeat 2 30 0 182 296 137 56 chrX 12884422 12884863 -164089277 + L2 LINE L2 2550 3053 -219 1991 123 0 7 chrX 12885081 12885399 -164088741 - AluSx SINE Alu 0 316 1 24 0 0 0 chrX 12886070 12886094 -164088046 + AT_rich Low_complexity Low_complexity 1 24 0 2193 120 7 0 chrX 12887051 12887350 -164086790 - AluSx SINE Alu -11 301 1 213 94 0 0 chrX 12887768 12887800 -164086340 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 225 310 115 0 chrX 12888229 12888316 -164085824 + MIR3 SINE MIR 91 187 -21 549 173 24 71 chrX 12888683 12888810 -164085330 + L1ME3 LINE L1 6022 6142 -20 2444 46 0 29 chrX 12888810 12889116 -164085024 - AluY SINE Alu -14 297 1 26 50 0 0 chrX 12889283 12889323 -164084817 + AT_rich Low_complexity Low_complexity 1 40 0 308 235 82 0 chrX 12889774 12889859 -164084281 - MIR SINE MIR 0 262 171 5489 103 26 19 chrX 12890719 12890974 -164083166 + L1MA1 LINE L1 5534 5786 -516 5489 83 28 16 chrX 12890974 12891725 -164082415 + L1MA1 LINE L1 5534 6297 -5 5489 103 26 19 chrX 12891725 12891806 -164082334 + L1MA1 LINE L1 5786 6297 -5 1676 106 0 0 chrX 12891812 12892038 -164082102 - Tigger3b DNA MER2_type -23 1208 983 1203 137 41 25 chrX 12892038 12892235 -164081905 + AluJb SINE Alu 81 280 -32 707 69 10 0 chrX 12892236 12892338 -164081802 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 3237 122 27 89 chrX 12892338 12892672 -164081468 - Tigger3b DNA MER2_type -2050 978 706 1270 90 22 6 chrX 12892672 12892850 -164081290 + L1MA1 LINE L1 6122 6302 0 3237 122 27 89 chrX 12892850 12893188 -164080952 - Tigger3b DNA MER2_type -2322 706 348 1210 99 6 0 chrX 12893288 12893449 -164080691 + AluSg/x SINE Alu 142 303 -7 1168 186 86 45 chrX 12893449 12893718 -164080422 - Tigger3b DNA MER2_type -940 291 12 2036 91 4 0 chrX 12895839 12896104 -164078036 + AluSp SINE Alu 32 297 -16 220 279 0 15 chrX 12896104 12896172 -164077968 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 215 300 302 23 chrX 12896626 12897239 -164076901 - L2 LINE L2 -594 2720 1937 243 212 91 0 chrX 12898073 12898139 -164076001 - MIR SINE MIR -92 116 45 345 341 61 16 chrX 12898164 12898410 -164075730 + L2 LINE L2 2212 2468 -846 * 563 272 38 16 chrX 12898385 12898569 -164075571 + MIR SINE MIR 22 209 -53 509 256 112 87 chrX 12898586 12898953 -164075187 + L2 LINE L2 2933 3308 -5 466 344 11 26 chrX 12899538 12899727 -164074413 + MIR SINE MIR 4 189 -73 261 0 0 0 chrX 12900060 12900089 -164074051 + (CA)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chrX 12901371 12901397 -164072743 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chrX 12902584 12902607 -164071533 + (A)n Simple_repeat Simple_repeat 1 23 0 2291 206 68 35 chrX 12902645 12903173 -164070967 + L1ME2 LINE L1 5572 6122 -42 1859 157 0 20 chrX 12903173 12903479 -164070661 + AluJo SINE Alu 1 300 -12 2291 206 68 35 chrX 12903479 12903524 -164070616 + L1ME2 LINE L1 6122 6164 0 355 234 81 27 chrX 12904008 12904119 -164070021 - MIR SINE MIR -70 192 76 216 0 0 0 chrX 12905880 12905904 -164068236 + (A)n Simple_repeat Simple_repeat 1 24 0 1832 143 11 4 chrX 12905958 12906261 -164067879 - AluJo SINE Alu 0 305 1 2330 94 0 0 chrX 12906825 12907122 -164067018 - AluSx SINE Alu -15 297 1 444 219 114 0 chrX 12907451 12907556 -164066584 + MER103 DNA DNA 1 117 -49 754 262 35 22 chrX 12908481 12908710 -164065430 - MIR SINE MIR -10 252 21 2195 101 0 20 chrX 12909333 12909639 -164064501 + AluSq SINE Alu 1 300 -13 1860 140 24 14 chrX 12910424 12910716 -164063424 - AluJo SINE Alu -7 305 11 2202 88 0 70 chrX 12911518 12911848 -164062292 + AluSg SINE Alu 1 307 -3 2301 96 0 10 chrX 12912761 12913073 -164061067 + AluSq SINE Alu 1 309 -4 1787 176 3 7 chrX 12914897 12915187 -164058953 + AluJb SINE Alu 1 289 -23 491 228 2 0 chrX 12916693 12916809 -164057331 + MLT1J1 LTR MaLR 68 161 -285 321 244 36 0 chrX 12916935 12917023 -164057117 + MLT1J2 LTR MaLR 353 443 -3 443 276 0 17 chrX 12917468 12917584 -164056556 + L2 LINE L2 3199 3312 -1 246 184 0 0 chrX 12917774 12917823 -164056317 - L1MD1 LINE L1 -14 6228 6180 630 263 106 17 chrX 12918087 12918323 -164055817 - MIR SINE MIR -5 257 1 239 274 16 16 chrX 12919034 12919096 -164055044 + MIR SINE MIR 20 81 -181 391 313 80 101 chrX 12919632 12919958 -164054182 + L2 LINE L2 2954 3272 0 212 216 20 20 chrX 12919954 12920005 -164054135 + MIR SINE MIR 138 188 -74 * 2174 110 0 25 chrX 12920378 12920666 -164053474 + AluSx SINE Alu 1 282 -30 225 0 0 0 chrX 12920666 12920691 -164053449 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 2174 110 0 25 chrX 12920691 12920720 -164053420 + AluSx SINE Alu 282 310 -2 1082 199 82 57 chrX 12921231 12921364 -164052776 + MER58B DNA MER1_type 29 157 -2263 2116 121 3 19 chrX 12921364 12921677 -164052463 + AluSx SINE Alu 1 308 -4 1082 199 82 57 chrX 12921677 12921825 -164052315 + MER58B DNA MER1_type 157 317 -24 7638 25 0 0 chrX 12921825 12922659 -164051481 + L1PA4 LINE L1 5319 6152 -3 873 185 63 39 chrX 12922705 12922910 -164051230 - Charlie5 DNA MER1_type -2398 214 5 452 374 14 14 chrX 12922918 12923140 -164051000 - MIR SINE MIR -38 224 3 412 307 69 26 chrX 12923188 12923377 -164050763 - MIR3 SINE MIR -4 204 8 200 337 116 0 chrX 12923760 12923846 -164050294 + MIR SINE MIR 37 132 -76 369 0 0 0 chrX 12924407 12924448 -164049692 + (CA)n Simple_repeat Simple_repeat 2 42 0 1039 201 13 40 chrX 12924819 12925043 -164049097 - MER20 DNA MER1_type -1 218 1 1069 195 98 35 chrX 12925480 12925657 -164048483 + Charlie4a DNA MER1_type 25 229 -1732 2207 85 0 7 chrX 12925657 12925975 -164048165 - AluSc SINE Alu 0 316 1 1069 195 98 35 chrX 12925975 12926083 -164048057 + Charlie4a DNA MER1_type 229 329 -179 1759 103 0 0 chrX 12926094 12926318 -164047822 - AluSg/x SINE Alu -13 299 76 847 132 0 0 chrX 12926318 12926439 -164047701 - AluSq/x SINE Alu -192 121 1 821 157 116 6 chrX 12926440 12926612 -164047528 + Charlie4a DNA MER1_type 315 505 -3 675 192 82 0 chrX 12926807 12926953 -164047187 + MER96 DNA MER1_type? 10 167 -8 387 0 0 0 chrX 12926972 12927015 -164047125 + (CA)n Simple_repeat Simple_repeat 2 44 0 779 208 6 66 chrX 12927055 12927238 -164046902 + MER5B DNA MER1_type 7 178 0 267 288 24 48 chrX 12927596 12927721 -164046419 + LTR37B LTR ERV1 73 194 -274 * 569 244 34 46 chrX 12927714 12927962 -164046178 + LTR37B LTR ERV1 111 390 -78 717 320 52 55 chrX 12928001 12928357 -164045783 - L2 LINE L2 -254 3018 2663 1614 184 46 7 chrX 12928357 12928639 -164045501 + AluJb SINE Alu 1 293 -19 1671 124 7 44 chrX 12928640 12928915 -164045225 + AluJb SINE Alu 39 303 -9 717 320 52 55 chrX 12928915 12929197 -164044943 - L2 LINE L2 -608 2664 2378 333 331 108 22 chrX 12930107 12930246 -164043894 + MIR SINE MIR 9 159 -103 323 323 63 13 chrX 12930326 12930484 -164043656 + MLT1I LTR MaLR 41 206 -203 256 255 161 50 chrX 12930517 12930678 -164043462 + MLT1J2 LTR MaLR 269 447 -3 182 132 26 26 chrX 12930690 12930728 -164043412 + MIR SINE MIR 154 191 -71 568 260 13 7 chrX 12932559 12932709 -164041431 + L1MC5 LINE L1 7746 7896 -65 771 133 37 52 chrX 12933075 12933210 -164040930 + FLAM_C SINE Alu 1 133 0 189 107 0 0 chrX 12935843 12935871 -164038269 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 1197 291 34 47 chrX 12935872 12936037 -164038103 - L1MC4 LINE L1 -144 7898 7732 2893 77 3 22 chrX 12936037 12936399 -164037741 + THE1A LTR MaLR 1 355 0 1197 291 34 47 chrX 12936399 12936824 -164037316 - L1MC4 LINE L1 -310 7732 7316 298 286 107 36 chrX 12936984 12937124 -164037016 - MIR SINE MIR -93 169 20 1568 156 41 32 chrX 12937134 12937449 -164036691 + MER58D DNA MER1_type 1 318 -68 216 0 0 0 chrX 12937889 12937913 -164036227 + (A)n Simple_repeat Simple_repeat 1 24 0 719 257 64 24 chrX 12937919 12938192 -164035948 + L1MC/D LINE L1 5529 5812 -311 854 301 77 39 chrX 12938192 12938726 -164035414 + LTR67 LTR ERVL 2 555 -2 1602 171 10 17 chrX 12939028 12939320 -164034820 - AluJo SINE Alu -22 290 1 418 164 0 0 chrX 12939326 12939387 -164034753 - AluJ/FLAM SINE Alu -251 61 1 264 250 0 0 chrX 12939935 12939991 -164034149 - MIR SINE MIR 0 262 207 186 189 0 0 chrX 12940383 12940420 -164033720 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 376 345 45 23 chrX 12942267 12942444 -164031696 + LTR67 LTR ERVL 3 183 -374 2706 92 17 3 chrX 12942468 12942828 -164031312 - L1PB1 LINE L1 -5 6146 5782 294 247 0 0 chrX 12942837 12942914 -164031226 + (TATG)n Simple_repeat Simple_repeat 2 78 0 236 78 0 118 chrX 12942914 12942965 -164031175 - L1MC4 LINE L1 -1339 6703 6659 604 141 31 6 chrX 12942996 12943105 -164031035 - L1PB1 LINE L1 -360 5791 5685 346 274 14 82 chrX 12943306 12943452 -164030688 + LTR67 LTR ERVL 413 548 -9 771 241 33 19 chrX 12943512 12943976 -164030164 - MLT1H LTR MaLR 0 549 1 2228 165 37 0 chrX 12944861 12945213 -164028927 - MLT1A1 LTR MaLR 0 365 1 2228 138 49 103 chrX 12945239 12945520 -164028620 - MLT1C LTR MaLR 0 467 223 257 0 30 0 chrX 12945520 12945553 -164028587 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2228 138 49 103 chrX 12945553 12945765 -164028375 - MLT1C LTR MaLR -244 223 1 454 289 16 0 chrX 12945871 12945992 -164028148 - MLT1J LTR MaLR -358 153 31 5538 182 35 30 chrX 12946412 12946649 -164027491 - L1MD1 LINE L1 0 6242 6008 2173 128 7 0 chrX 12946649 12946945 -164027195 - AluSx SINE Alu -14 298 1 5538 182 35 30 chrX 12946945 12948651 -164025489 - L1MD1 LINE L1 -234 6008 4290 1428 199 37 25 chrX 12948653 12948975 -164025165 - L1M4 LINE L1 -1623 4523 4198 1254 163 30 52 chrX 12948976 12949246 -164024894 - AluJo SINE Alu -13 299 36 667 188 0 0 chrX 12949273 12949390 -164024750 - L1M4 LINE L1 -1950 4196 4080 1163 217 14 5 chrX 12949470 12949691 -164024449 + MER58A DNA MER1_type 2 224 0 1775 151 0 77 chrX 12950038 12950362 -164023778 + AluJo SINE Alu 1 299 -13 424 146 0 125 chrX 12950415 12950511 -164023629 + MER81 DNA DNA 1 84 -30 1826 340 51 28 chrX 12952729 12953259 -164020881 + MLT1F LTR MaLR 1 542 0 484 295 52 43 chrX 12953325 12953467 -164020673 + MIR SINE MIR 3 150 -112 1928 138 0 7 chrX 12953467 12953780 -164020360 + AluSx SINE Alu 1 311 0 484 295 52 43 chrX 12953780 12953846 -164020294 + MIR SINE MIR 150 214 -48 822 256 99 48 chrX 12954102 12954132 -164020008 - MLT1I LTR MaLR -4 405 378 1163 152 71 29 chrX 12954132 12954342 -164019798 - MER20 DNA MER1_type 0 219 1 822 256 99 48 chrX 12954342 12954604 -164019536 - MLT1I LTR MaLR -31 378 98 2927 135 11 44 chrX 12954913 12955455 -164018685 + L1MB7 LINE L1 5629 6152 -32 1065 148 42 9 chrX 12956454 12956670 -164017470 - Charlie4a DNA MER1_type -3 505 283 2228 81 14 14 chrX 12956676 12956998 -164017142 + AluSc SINE Alu 1 322 0 1096 109 12 18 chrX 12956998 12957163 -164016977 + AluSg/x SINE Alu 133 296 -14 1172 194 45 22 chrX 12957175 12957443 -164016697 - Charlie4a DNA MER1_type -231 277 4 446 283 118 45 chrX 12959199 12959513 -164014627 + MLT1H1 LTR MaLR 217 553 -2 1893 148 13 16 chrX 12959530 12959841 -164014299 - AluJo SINE Alu -2 310 1 1089 130 46 8 chrX 12961158 12961368 -164012772 + L1MB4 LINE L1 5964 6174 0 604 212 53 0 chrX 12961608 12961740 -164012400 + L1MC4 LINE L1 7346 7484 -558 5856 98 2 2 chrX 12961740 12962545 -164011595 + L1PA13 LINE L1 5340 6144 -19 966 193 51 99 chrX 12962553 12962617 -164011523 + L1MC4 LINE L1 7470 7536 -506 1991 102 38 41 chrX 12962617 12962910 -164011230 - AluSx SINE Alu -20 292 1 966 193 51 99 chrX 12962910 12963197 -164010943 + L1MC4 LINE L1 7536 7804 -238 529 215 114 0 chrX 12963229 12963378 -164010762 + L1MC4a LINE L1 6302 6467 -1341 24 53 0 0 chrX 12963452 12963490 -164010650 + AT_rich Low_complexity Low_complexity 1 38 0 539 176 54 57 chrX 12963493 12963643 -164010497 + L1MC4 LINE L1 6154 8042 0 237 221 156 0 chrX 12963698 12963775 -164010365 + MLT1J1 LTR MaLR 358 446 0 2377 233 80 5 chrX 12963870 12964486 -164009654 + L1MC4a LINE L1 7146 7788 -20 248 263 110 8 chrX 12964542 12964660 -164009480 + HAL1 LINE L1 47 176 -2331 1819 208 108 34 chrX 12964777 12965312 -164008828 - HsTC2 DNA Tc2 -41 1857 1283 3541 170 40 31 chrX 12965418 12966547 -164007593 + L1MB8 LINE L1 4822 5950 -228 351 227 0 0 chrX 12966689 12966817 -164007323 + C-rich Low_complexity Low_complexity 1 128 0 6184 46 18 21 chrX 12966927 12967746 -164006394 + SVA Other Other 575 1390 0 25 0 0 0 chrX 12967746 12967771 -164006369 + AT_rich Low_complexity Low_complexity 1 25 0 1853 155 0 26 chrX 12968648 12968958 -164005182 - AluJb SINE Alu -10 302 1 3435 191 53 16 chrX 12968990 12969445 -164004695 - L1MA9 LINE L1 -48 6264 5768 441 0 0 0 chrX 12969445 12969494 -164004646 + (TG)n Simple_repeat Simple_repeat 2 50 0 3435 191 53 16 chrX 12969494 12969795 -164004345 - L1MA9 LINE L1 -544 5768 5480 3624 39 0 3 chrX 12970005 12970443 -164003697 - L1PA7 LINE L1 -20 6134 5700 468 271 17 68 chrX 12970441 12970677 -164003463 - L1MC5 LINE L1 -34 7927 7704 * 2159 79 10 39 chrX 12970678 12970983 -164003157 - AluSc SINE Alu -13 296 1 539 229 42 36 chrX 12971094 12971260 -164002880 - L1MC5 LINE L1 -14 7947 7781 1249 140 7 101 chrX 12971307 12971526 -164002614 - L1MB5 LINE L1 -8 6166 5977 1543 188 3 42 chrX 12971526 12971834 -164002306 + AluJo SINE Alu 7 302 -10 1249 140 7 101 chrX 12971834 12971892 -164002248 - L1MB5 LINE L1 -197 5977 5915 2061 216 36 57 chrX 12971900 12972355 -164001785 - L1MC5 LINE L1 -182 7779 7341 1490 146 112 10 chrX 12972355 12972649 -164001491 + MER33 DNA MER1_type 1 324 0 2061 216 36 57 chrX 12972649 12972877 -164001263 - L1MC5 LINE L1 -620 7341 7110 1275 171 23 85 chrX 12972879 12973184 -164000956 + AluJo SINE Alu 20 305 -7 420 218 20 0 chrX 12973197 12973298 -164000842 - L1MC5 LINE L1 -856 7105 7003 1751 148 43 4 chrX 12973328 12973605 -164000535 + AluJb SINE Alu 1 288 -24 4954 73 19 18 chrX 12973709 12974395 -163999745 - SVA Other Other -683 703 17 2453 109 23 0 chrX 12974606 12974955 -163999185 - MER46B DNA MER2_type -4 232 1 1425 203 114 3 chrX 12975286 12975592 -163998548 + MER58B DNA MER1_type 1 340 -1 1667 171 44 0 chrX 12975649 12975924 -163998216 + AluJb SINE Alu 1 287 -25 6097 58 9 5 chrX 12976096 12976858 -163997282 - SVA Other Other 0 1386 622 212 225 0 0 chrX 12976963 12977003 -163997137 + C-rich Low_complexity Low_complexity 1 40 0 637 249 126 52 chrX 12977790 12978155 -163995985 + MLT1J2 LTR MaLR 59 450 0 1714 216 202 6 chrX 12978567 12979077 -163995063 + L1ME3A LINE L1 5551 6160 -10 373 194 207 16 chrX 12979422 12979530 -163994610 + FLAM_A SINE Alu 11 116 -17 658 74 0 3 chrX 12979617 12979848 -163994292 + AluSx SINE Alu 1 300 -10 2305 82 0 17 chrX 12980088 12980381 -163993759 + AluSg SINE Alu 1 288 -22 2363 95 3 0 chrX 12980438 12980744 -163993396 + AluSx SINE Alu 1 307 -5 1260 203 14 17 chrX 12980990 12981286 -163992854 - L1MB8 LINE L1 0 6178 5884 2111 103 10 3 chrX 12981287 12981577 -163992563 - AluSx SINE Alu -19 293 2 2029 116 32 3 chrX 12982190 12982475 -163991665 - AluSq SINE Alu -20 293 1 2212 85 17 17 chrX 12982475 12982767 -163991373 - AluSc SINE Alu -16 293 1 2344 106 0 13 chrX 12982824 12983135 -163991005 - AluSx SINE Alu -5 307 1 2359 96 7 0 chrX 12983215 12983518 -163990622 - AluSg SINE Alu -5 305 1 2258 109 7 0 chrX 12983518 12983822 -163990318 - AluSp SINE Alu -2 311 6 2307 147 67 21 chrX 12983863 12984186 -163989954 + L1M4 LINE L1 5226 5579 -599 1501 179 37 24 chrX 12984186 12984482 -163989658 + AluJo SINE Alu 1 300 -12 2307 147 67 21 chrX 12984482 12984631 -163989509 + L1M4 LINE L1 5579 5720 -458 2448 58 7 0 chrX 12984632 12984924 -163989216 + AluY SINE Alu 1 294 -17 1749 141 6 42 chrX 12985296 12985609 -163988531 - AluY SINE Alu -9 302 1 1569 179 64 67 chrX 12985727 12986118 -163988022 + L1MC4 LINE L1 7515 7904 -138 3275 135 146 8 chrX 12986141 12986743 -163987397 + LTR34 LTR ERV1 13 697 -2 192 40 0 0 chrX 12986743 12986768 -163987372 + (GA)n Simple_repeat Simple_repeat 2 26 0 519 173 78 2 chrX 12986776 12986894 -163987246 + L1MC4 LINE L1 7859 8036 -6 1730 176 150 21 chrX 12987087 12987365 -163986775 + MLT1F1 LTR MaLR 138 479 -88 4008 125 17 40 chrX 12987365 12988015 -163986125 + MER41B LTR ERV1 1 635 0 1730 176 150 21 chrX 12988015 12988117 -163986023 + MLT1F1 LTR MaLR 479 567 0 3161 129 23 0 chrX 12988595 12989076 -163985064 - L1PA16 LINE L1 -9 6157 5666 1201 239 85 31 chrX 12989752 12990175 -163983965 - LTR16A1 LTR ERVL 0 457 12 1095 254 146 23 chrX 12990209 12990607 -163983533 + MLT1J2 LTR MaLR 1 447 -3 246 128 0 0 chrX 12991190 12991229 -163982911 + (CA)n Simple_repeat Simple_repeat 2 40 0 1948 146 20 0 chrX 12991289 12991584 -163982556 - AluJo SINE Alu -11 301 1 2056 119 17 0 chrX 12991613 12991906 -163982234 + AluSg SINE Alu 1 298 -12 392 179 11 0 chrX 12992143 12992197 -163981943 + GA-rich Low_complexity Low_complexity 1 58 -38 2852 86 0 0 chrX 12992197 12992559 -163981581 - THE1B LTR MaLR -2 362 1 392 179 11 0 chrX 12992559 12992599 -163981541 + GA-rich Low_complexity Low_complexity 58 96 0 1134 126 11 49 chrX 12992918 12993047 -163981093 - Tigger3(Golem) DNA MER2_type 0 3028 2906 2356 127 50 75 chrX 12993047 12993452 -163980688 + MER65A LTR ERV1 1 395 -50 1853 164 3 25 chrX 12993452 12993769 -163980371 - AluJb SINE Alu -2 310 1 2356 127 50 75 chrX 12993769 12993819 -163980321 + MER65A LTR ERV1 395 445 0 1134 126 11 49 chrX 12993819 12993872 -163980268 - Tigger3(Golem) DNA MER2_type -122 2906 2853 2555 142 47 0 chrX 12993874 12994283 -163979857 - MSTA LTR MaLR 0 428 1 10097 154 22 3 chrX 12994283 12995903 -163978237 - MSTA-int LTR MaLR 0 1651 1 361 214 38 69 chrX 12996915 12997046 -163977094 + MIR SINE MIR 93 219 -43 2059 149 10 0 chrX 12997306 12997615 -163976525 - AluSx SINE Alu 0 312 1 847 146 0 42 chrX 12997632 12997776 -163976364 - FLAM_C SINE Alu -5 138 1 4775 113 38 11 chrX 12998310 12998489 -163975651 - L1MA4 LINE L1 -4 6296 6123 2037 137 10 3 chrX 12998489 12998782 -163975358 + AluJb SINE Alu 1 295 -17 4775 113 38 11 chrX 12998782 12999365 -163974775 - L1MA4 LINE L1 -177 6123 5513 5588 126 11 7 chrX 12999372 13000359 -163973781 - L1MA4 LINE L1 -743 5403 4469 2986 197 49 57 chrX 13000459 13000496 -163973644 - L1ME2 LINE L1 -2 6162 6126 2045 131 7 0 chrX 13000496 13000821 -163973319 - AluJb SINE Alu 0 312 1 2986 197 49 57 chrX 13000821 13000909 -163973231 - L1ME2 LINE L1 -38 6126 6039 1955 140 10 3 chrX 13000909 13001202 -163972938 - AluJb SINE Alu -17 295 1 2986 197 49 57 chrX 13001202 13001580 -163972560 - L1ME2 LINE L1 -125 6039 5660 239 0 0 31 chrX 13001580 13001612 -163972528 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2986 197 49 57 chrX 13001612 13001720 -163972420 - L1ME2 LINE L1 -504 5660 5553 1913 79 0 17 chrX 13001720 13001961 -163972179 - AluSx SINE Alu -18 294 58 2986 197 49 57 chrX 13001961 13002177 -163971963 - L1ME2 LINE L1 -611 5553 5338 412 231 196 0 chrX 13003224 13003367 -163970773 - MER5A DNA MER1_type -7 182 12 1628 168 51 0 chrX 13003438 13003712 -163970428 - AluJb SINE Alu -24 288 1 595 99 0 40 chrX 13003718 13003819 -163970321 - L1MA4A LINE L1 -6 6297 6201 356 85 0 0 chrX 13003821 13003868 -163970272 - L1MA4 LINE L1 -56 6244 6198 1243 91 61 30 chrX 13003870 13004003 -163970137 - L1MA4 LINE L1 -56 6244 6102 2313 129 65 45 chrX 13004003 13004226 -163969914 - MSTB LTR MaLR 0 426 190 2096 128 3 3 chrX 13004226 13004523 -163969617 - AluSx SINE Alu -15 297 1 2313 129 65 45 chrX 13004523 13004717 -163969423 - MSTB LTR MaLR -236 190 1 1243 91 61 30 chrX 13004717 13004781 -163969359 - L1MA4 LINE L1 -198 6102 6041 312 241 92 64 chrX 13004948 13005089 -163969051 + MLT1L LTR MaLR 168 312 -303 1878 146 50 0 chrX 13005096 13005377 -163968763 - AluJo SINE Alu -17 295 1 2356 96 0 7 chrX 13005958 13006261 -163967879 - AluSx SINE Alu -11 301 1 385 171 0 110 chrX 13006373 13006478 -163967662 + L1M1 LINE L1 11 546 -6943 2126 92 33 0 chrX 13006479 13006751 -163967389 + AluSx SINE Alu 1 281 -31 186 43 0 0 chrX 13006753 13006776 -163967364 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 204 352 0 28 chrX 13006785 13006856 -163967284 - L2 LINE L2 -79 3193 3125 2005 110 38 0 chrX 13006895 13007186 -163966954 + AluJo SINE Alu 1 302 -10 319 174 111 0 chrX 13007845 13007933 -163966207 + L1MC/D LINE L1 5600 5696 -642 334 327 84 34 chrX 13008030 13008409 -163965731 + L1ME LINE L1 5381 5778 -384 2375 79 3 3 chrX 13008778 13009070 -163965070 + AluSp SINE Alu 1 292 -21 412 286 0 13 chrX 13009300 13009454 -163964686 - THE1B LTR MaLR -34 330 179 315 0 0 0 chrX 13011593 13011628 -163962512 + (TGG)n Simple_repeat Simple_repeat 1 35 0 2400 89 0 0 chrX 13011928 13012231 -163961909 - AluSx SINE Alu -9 303 1 4804 128 31 26 chrX 13012239 13013039 -163961101 - L1MC1 LINE L1 0 6333 5530 384 281 42 0 chrX 13013119 13013215 -163960925 - L2 LINE L2 -25 3288 3189 1889 154 14 3 chrX 13013290 13013583 -163960557 + AluJo SINE Alu 1 296 -16 1478 154 62 26 chrX 13013908 13014024 -163960116 + AluJo SINE Alu 1 111 -197 540 0 0 0 chrX 13014024 13014084 -163960056 + (CA)n Simple_repeat Simple_repeat 2 61 0 1478 154 62 26 chrX 13014084 13014265 -163959875 + AluJo SINE Alu 111 308 0 2319 65 7 7 chrX 13014605 13014911 -163959229 - L1PA7 LINE L1 -4 6150 5845 1528 111 202 4 chrX 13015365 13015618 -163958522 + AluSq SINE Alu 1 303 -10 447 35 0 0 chrX 13015618 13015675 -163958465 + (CA)n Simple_repeat Simple_repeat 2 58 0 204 219 0 0 chrX 13016038 13016079 -163958061 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1891 161 3 22 chrX 13016464 13016781 -163957359 - AluJb SINE Alu -1 311 1 440 296 28 23 chrX 13016791 13016967 -163957173 - L1MC5 LINE L1 -36 7925 7749 2366 94 0 7 chrX 13017327 13017634 -163956506 - AluSx SINE Alu -7 305 1 319 253 121 10 chrX 13017762 13017861 -163956279 + MER81 DNA DNA 3 112 -2 1808 206 228 8 chrX 13017875 13018361 -163955779 - MLT1E LTR MaLR 0 593 1 589 148 71 90 chrX 13018655 13018810 -163955330 + Charlie4 DNA MER1_type 1 152 -1809 1497 156 0 0 chrX 13018811 13019036 -163955104 - AluJb SINE Alu 0 312 88 1886 162 0 7 chrX 13019648 13019945 -163954195 + AluSx SINE Alu 1 295 -17 1076 197 10 5 chrX 13020284 13020477 -163953663 - MER20 DNA MER1_type -3 216 23 319 163 23 70 chrX 13020529 13020615 -163953525 - MIR SINE MIR -109 153 72 558 246 99 53 chrX 13020989 13021376 -163952764 - LTR33 LTR ERVL -110 413 1 1635 178 17 7 chrX 13021624 13021916 -163952224 - AluJb SINE Alu -17 295 1 9186 176 27 28 chrX 13022202 13022601 -163951539 + L1M2 LINE L1 3502 3900 -2412 1888 153 3 13 chrX 13022601 13022909 -163951231 + AluJo SINE Alu 1 305 -7 9186 176 27 28 chrX 13022909 13024618 -163949522 + L1M2 LINE L1 3900 5606 -706 2568 70 3 0 chrX 13025148 13025460 -163948680 - AluSp SINE Alu 0 313 1 1771 147 3 29 chrX 13025461 13025773 -163948367 - AluJo SINE Alu -8 304 1 501 209 68 41 chrX 13026241 13026439 -163947701 + MLT1H LTR MaLR 1 216 -326 463 209 0 11 chrX 13026439 13026530 -163947610 - LTR16B LTR ERVL -2 462 373 514 111 0 0 chrX 13026555 13026627 -163947513 + MADE1 DNA Mariner 9 80 0 2057 220 31 43 chrX 13026631 13026683 -163947457 - L1ME3 LINE L1 -52 6110 6059 2230 102 7 0 chrX 13026683 13026978 -163947162 + AluSx SINE Alu 1 297 -15 2057 220 31 43 chrX 13026978 13027222 -163946918 - L1ME3 LINE L1 -103 6059 5820 2254 107 7 0 chrX 13027222 13027521 -163946619 - AluSc SINE Alu -8 301 1 2057 220 31 43 chrX 13027521 13027763 -163946377 - L1ME3 LINE L1 -342 5820 5577 219 344 0 0 chrX 13027844 13027908 -163946232 + L2 LINE L2 3126 3189 -83 31 0 0 0 chrX 13027921 13027952 -163946188 + AT_rich Low_complexity Low_complexity 1 31 0 725 92 0 10 chrX 13027954 13028052 -163946088 - HY3 scRNA scRNA -4 97 1 1750 160 6 45 chrX 13028115 13028428 -163945712 + AluJb SINE Alu 1 301 -11 236 307 27 0 chrX 13028799 13028874 -163945266 - MLT1K LTR MaLR 0 588 512 249 56 19 56 chrX 13028966 13029020 -163945120 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 374 167 26 0 chrX 13029190 13029268 -163944872 + CT-rich Low_complexity Low_complexity 1 80 0 2126 122 7 3 chrX 13029290 13029586 -163944554 - AluSq SINE Alu -16 297 1 390 191 24 12 chrX 13029735 13029819 -163944321 + LTR37B LTR ERV1 1 85 -383 554 253 32 13 chrX 13029993 13030151 -163943989 + MER110 LTR ERV1 316 476 -15 1615 195 0 3 chrX 13030201 13030505 -163943635 + AluJo SINE Alu 1 303 0 344 313 119 6 chrX 13030739 13030915 -163943225 + L2 LINE L2 1882 2077 -1237 2266 172 14 3 chrX 13031348 13031709 -163942431 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chrX 13032213 13032235 -163941905 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1693 11 16 0 chrX 13032235 13032421 -163941719 - L1PA3 LINE L1 -18 6137 5949 1382 228 36 31 chrX 13032455 13032595 -163941545 + LTR37B LTR ERV1 1 139 -329 2502 56 0 7 chrX 13032595 13032900 -163941240 - AluY SINE Alu -6 305 3 1382 228 36 31 chrX 13032900 13033180 -163940960 + LTR37B LTR ERV1 139 423 -45 912 247 50 70 chrX 13033188 13033589 -163940551 - HAL1 LINE L1 -2111 396 4 26 0 0 0 chrX 13033722 13033748 -163940392 + AT_rich Low_complexity Low_complexity 1 26 0 4355 114 16 22 chrX 13033831 13033872 -163940268 + L1MA4A LINE L1 5627 5667 -636 1826 164 3 3 chrX 13033872 13034185 -163939955 + AluJo SINE Alu 1 313 0 4355 114 16 22 chrX 13034185 13034811 -163939329 + L1MA4A LINE L1 5667 6291 -12 812 320 81 17 chrX 13035163 13035640 -163938500 + MLT1K LTR MaLR 27 569 -19 2033 164 0 0 chrX 13036654 13036964 -163937176 + AluSx SINE Alu 1 310 -2 3343 127 2 2 chrX 13036977 13037490 -163936650 + L1MA4 LINE L1 4491 5003 -1143 * 6074 106 13 11 chrX 13037460 13038372 -163935768 + L1MA4 LINE L1 5381 6294 -6 2849 106 37 0 chrX 13038541 13038948 -163935192 - L1MB2 LINE L1 -1 6170 5749 26 30 0 0 chrX 13038962 13038995 -163935145 + AT_rich Low_complexity Low_complexity 1 33 0 441 0 0 0 chrX 13039065 13039114 -163935026 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 357 137 51 0 chrX 13039256 13039373 -163934767 + (TA)n Simple_repeat Simple_repeat 2 124 0 3830 145 67 26 chrX 13040139 13040823 -163933317 - L1MB7 LINE L1 -16 6168 5457 387 224 35 35 chrX 13042265 13042381 -163931759 - L1ME3A LINE L1 0 6170 6055 532 265 32 22 chrX 13042523 13042708 -163931432 - MIR SINE MIR 0 262 76 734 221 84 13 chrX 13042794 13042948 -163931192 + FRAM SINE Alu 1 165 -1 1782 121 10 49 chrX 13043056 13043361 -163930779 + AluSx SINE Alu 1 293 -19 277 323 166 22 chrX 13043701 13043924 -163930216 + MIR SINE MIR 2 256 -6 2318 76 7 0 chrX 13044450 13044777 -163929363 - AluSg SINE Alu 0 347 19 445 271 89 26 chrX 13045082 13045351 -163928789 - L1MC4a LINE L1 -1913 5895 5610 183 306 127 30 chrX 13045580 13045714 -163928426 - L3 LINE CR1 -163 1414 1268 21 0 0 0 chrX 13045765 13045786 -163928354 + AT_rich Low_complexity Low_complexity 1 21 0 784 224 148 76 chrX 13045806 13046083 -163928057 - AluJo SINE Alu -4 298 2 797 200 0 8 chrX 13046203 13046333 -163927807 + FLAM_A SINE Alu 1 129 -4 295 253 40 30 chrX 13046383 13046482 -163927658 - L3 LINE CR1 -578 999 900 2308 83 10 26 chrX 13046482 13046794 -163927346 - AluSp SINE Alu -2 311 5 187 98 24 73 chrX 13047358 13047399 -163926741 - MIR SINE MIR -118 144 106 350 248 187 75 chrX 13048138 13048352 -163925788 + L1MC/D LINE L1 5583 5820 -1988 819 180 31 0 chrX 13048354 13048482 -163925658 + FLAM_C SINE Alu 2 133 -10 667 278 149 14 chrX 13048726 13049014 -163925126 - MER68 LTR ERV1 -7 555 229 1651 159 32 18 chrX 13049389 13049672 -163924468 + AluJo SINE Alu 1 287 -25 308 214 101 22 chrX 13049690 13049779 -163924361 - L1MC4a LINE L1 -528 5636 5541 2178 129 0 0 chrX 13049833 13050144 -163923996 - AluSx SINE Alu -1 311 1 2192 98 47 0 chrX 13050332 13050629 -163923511 - AluY SINE Alu 0 311 1 247 271 225 8 chrX 13051161 13051290 -163922850 + MER102b DNA MER1_type 185 341 0 779 308 53 30 chrX 13052472 13052833 -163921307 - MER68 LTR ERV1 -4 558 190 4183 153 58 64 chrX 13053757 13054462 -163919678 - L1MB7 LINE L1 -54 6130 5422 242 29 29 0 chrX 13054462 13054497 -163919643 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2009 146 0 0 chrX 13054499 13054787 -163919353 - AluSx SINE Alu -24 288 1 4183 153 58 64 chrX 13054787 13055011 -163919129 - L1MB7 LINE L1 -763 5421 5195 1833 156 3 0 chrX 13055012 13055300 -163918840 - AluJb SINE Alu -3 309 21 1991 118 14 14 chrX 13055683 13055979 -163918161 + AluSx SINE Alu 1 296 -16 1919 110 45 14 chrX 13056835 13057126 -163917014 + AluSx SINE Alu 1 300 -12 889 201 130 0 chrX 13057456 13057625 -163916515 + AluJo SINE Alu 11 201 -111 180 318 127 0 chrX 13059374 13059484 -163914656 - L2 LINE L2 -4 3268 3145 983 159 92 57 chrX 13059720 13059865 -163914275 - MER46A DNA MER2_type -2495 236 79 1714 138 15 90 chrX 13059865 13060199 -163913941 - AluSx SINE Alu -1 311 3 983 159 92 57 chrX 13060199 13060280 -163913860 - MER46A DNA MER2_type -2652 79 2 903 136 30 0 chrX 13060681 13060813 -163913327 + AluJo SINE Alu 1 136 -176 824 118 7 44 chrX 13061436 13061572 -163912568 + FAM SINE Alu 42 172 -13 459 159 0 0 chrX 13062634 13062703 -163911437 - L1MB7 LINE L1 -8 6176 6108 1056 175 76 22 chrX 13062753 13063017 -163911123 - L1MB8 LINE L1 -63 6115 5840 1852 123 0 55 chrX 13063150 13063458 -163910682 + AluJb SINE Alu 1 291 -21 2130 66 11 11 chrX 13063664 13063937 -163910203 - AluSc SINE Alu -36 273 1 1876 148 0 0 chrX 13063989 13064266 -163909874 - AluJb SINE Alu -20 292 16 286 179 119 0 chrX 13064329 13064396 -163909744 - Charlie2a DNA MER1_type -1275 1587 1513 370 193 33 31 chrX 13064922 13065036 -163909104 + L1MC4 LINE L1 7860 8039 -3 2282 82 0 0 chrX 13069921 13070201 -163903939 - AluSc SINE Alu -17 292 13 2183 89 14 3 chrX 13070343 13070635 -163903505 - AluSg SINE Alu -15 295 1 598 187 73 20 chrX 13070765 13070915 -163903225 + MER5A DNA MER1_type 32 189 0 189 300 57 0 chrX 13072616 13072686 -163901454 - MIR SINE MIR -142 120 47 197 255 0 0 chrX 13072726 13072773 -163901367 - MIR SINE MIR -4 258 212 270 310 0 53 chrX 13074246 13074359 -163899781 - MIR3 SINE MIR -18 190 84 1774 118 53 15 chrX 13074867 13075129 -163899011 - AluJb SINE Alu -35 277 6 290 169 13 91 chrX 13075740 13075817 -163898323 - MER116 DNA Mariner -9 71 1 541 241 9 0 chrX 13075930 13076042 -163898098 + MER81 DNA DNA 2 114 0 180 0 0 0 chrX 13076926 13076946 -163897194 + (TG)n Simple_repeat Simple_repeat 2 21 0 243 275 111 53 chrX 13078421 13078592 -163895548 + MIR SINE MIR 82 262 0 358 242 132 5 chrX 13078988 13079178 -163894962 + L1MC5 LINE L1 7449 7662 -299 1409 131 5 0 chrX 13079221 13079419 -163894721 - AluJo SINE Alu -113 199 1 439 184 80 16 chrX 13079422 13079547 -163894593 + L1MC5 LINE L1 7654 7786 -175 690 205 0 0 chrX 13079566 13079683 -163894457 + FLAM_C SINE Alu 2 118 -15 504 0 0 0 chrX 13079684 13079740 -163894400 + (CA)n Simple_repeat Simple_repeat 2 57 0 21 0 0 0 chrX 13079813 13079834 -163894306 + AT_rich Low_complexity Low_complexity 1 21 0 221 221 159 97 chrX 13082737 13082882 -163891258 - MIR SINE MIR -73 189 36 1907 107 0 0 chrX 13083380 13083624 -163890516 - AluSq SINE Alu -69 244 1 2021 116 14 7 chrX 13083627 13083919 -163890221 - AluSp SINE Alu -18 295 2 506 137 116 0 chrX 13084553 13084648 -163889492 + MER3 DNA MER1_type 103 208 -1 686 209 163 0 chrX 13084700 13084872 -163889268 - MER58C DNA MER1_type 0 215 16 524 128 0 43 chrX 13084949 13085043 -163889097 + AluJ/FRAM SINE Alu 223 312 0 831 257 79 69 chrX 13085051 13085630 -163888510 - L1ME LINE L1 -384 5786 5202 2170 105 0 30 chrX 13085630 13085934 -163888206 - AluSg SINE Alu -15 295 1 831 257 79 69 chrX 13085934 13086197 -163887943 - L1ME LINE L1 -968 5202 4943 1183 196 107 11 chrX 13086212 13086483 -163887657 - AluJo SINE Alu -5 297 1 320 296 53 35 chrX 13086507 13086676 -163887464 + L1M4 LINE L1 4538 4709 -1437 2363 76 3 0 chrX 13087085 13087373 -163886767 - AluSp SINE Alu -4 309 21 420 200 10 30 chrX 13087638 13087738 -163886402 + MER5A DNA MER1_type 9 106 -83 241 299 0 0 chrX 13087882 13087949 -163886191 + T-rich Low_complexity Low_complexity 4 70 0 2510 60 0 10 chrX 13088215 13088513 -163885627 - AluY SINE Alu -16 295 1 2370 59 7 19 chrX 13088554 13088861 -163885279 - AluY SINE Alu -8 303 1 2238 103 3 0 chrX 13089130 13089440 -163884700 + AluY SINE Alu 1 311 0 2291 81 7 7 chrX 13089500 13089798 -163884342 + AluY SINE Alu 1 298 -13 904 118 0 16 chrX 13091328 13091455 -163882685 + FLAM_C SINE Alu 1 125 -18 1052 101 7 0 chrX 13091822 13091960 -163882180 - AluSq/x SINE Alu -173 139 1 253 266 110 57 chrX 13092203 13092266 -163881874 - L1ME4a LINE L1 -86 6035 5977 2361 85 0 16 chrX 13092266 13092571 -163881569 - AluSq SINE Alu -13 300 1 253 266 110 57 chrX 13092571 13092675 -163881465 - L1ME4a LINE L1 -144 5977 5880 2058 153 0 0 chrX 13092675 13092976 -163881164 + AluSx SINE Alu 1 301 -11 253 266 110 57 chrX 13092976 13093089 -163881051 - L1ME4a LINE L1 -241 5880 5739 1868 137 33 13 chrX 13095488 13095788 -163878352 + AluJb SINE Alu 1 306 -6 303 290 35 28 chrX 13095932 13096077 -163878063 + L2 LINE L2 2534 2679 -635 2107 108 6 55 chrX 13096101 13096426 -163877714 - AluSx SINE Alu -3 309 1 704 335 73 32 chrX 13096720 13097471 -163876669 - L2 LINE L2 -24 3289 2503 255 61 0 0 chrX 13097561 13097594 -163876546 + (A)n Simple_repeat Simple_repeat 1 33 0 2299 97 3 10 chrX 13097622 13097933 -163876207 + AluSg SINE Alu 1 309 -1 2060 93 14 10 chrX 13098066 13098355 -163875785 + AluSq SINE Alu 1 290 -23 180 97 0 0 chrX 13098360 13098391 -163875749 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 417 270 7 47 chrX 13098401 13098549 -163875591 - L2 LINE L2 -845 2469 2328 267 306 33 25 chrX 13098725 13098846 -163875294 - MIR SINE MIR -84 178 57 695 229 167 5 chrX 13098902 13099112 -163875028 + LTR50 LTR ERVL 1 244 -551 419 152 130 0 chrX 13099119 13099211 -163874929 + LTR50 LTR ERVL 498 601 -194 348 195 98 0 chrX 13099246 13099328 -163874812 + LTR50 LTR ERVL 706 795 0 194 286 65 13 chrX 13099492 13099569 -163874571 - L2 LINE L2 -33 3280 3200 288 0 0 0 chrX 13099625 13099657 -163874483 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2227 90 7 0 chrX 13099672 13099961 -163874179 - AluSx SINE Alu -20 292 2 1016 159 0 6 chrX 13099976 13100133 -163874007 - FRAM SINE Alu -24 152 1 261 358 0 11 chrX 13100179 13100274 -163873866 - L2 LINE L2 -216 3056 2963 2291 126 0 0 chrX 13100294 13100604 -163873536 + AluSx SINE Alu 2 311 -1 635 177 85 8 chrX 13100621 13100751 -163873389 + MER5B DNA MER1_type 33 172 -6 279 0 0 0 chrX 13100803 13100834 -163873306 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 789 136 0 8 chrX 13100853 13100971 -163873169 + FLAM_C SINE Alu 2 118 -15 22 56 0 0 chrX 13101010 13101046 -163873094 + AT_rich Low_complexity Low_complexity 1 36 0 2418 202 118 44 chrX 13101419 13101543 -163872597 - L1MD3 LINE L1 0 8042 7929 191 36 36 0 chrX 13101543 13101571 -163872569 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 2418 202 118 44 chrX 13101571 13101958 -163872182 - L1MD3 LINE L1 -113 7929 7572 1752 81 0 0 chrX 13101958 13102169 -163871971 - AluSg/x SINE Alu -17 295 85 1993 124 0 20 chrX 13102173 13102471 -163871669 - AluSx SINE Alu -20 292 1 2418 202 118 44 chrX 13102471 13102671 -163871469 - L1MD3 LINE L1 -472 7570 7284 397 188 31 10 chrX 13103020 13103116 -163871024 + L2 LINE L2 2609 2706 -608 1005 237 98 17 chrX 13103293 13103639 -163870501 + L2 LINE L2 2920 3293 -20 402 21 0 0 chrX 13103639 13103686 -163870454 + (TG)n Simple_repeat Simple_repeat 2 48 0 291 85 0 0 chrX 13103687 13103734 -163870406 + (GA)n Simple_repeat Simple_repeat 2 48 0 577 156 37 59 chrX 13103805 13103889 -163870251 + MER69 DNA AcHobo 5 89 -1137 1904 156 3 0 chrX 13103889 13104194 -163869946 + AluJb SINE Alu 1 306 0 577 156 37 59 chrX 13104194 13104267 -163869873 + MER69 DNA AcHobo 89 203 -1023 969 273 90 31 chrX 13104287 13104851 -163869289 + MLT2F LTR ERVL 29 663 0 * 1308 223 139 32 chrX 13104851 13105127 -163869013 + MER69 DNA AcHobo 206 526 -2000 2423 98 0 0 chrX 13105127 13105424 -163868716 + AluSx SINE Alu 1 297 -15 1308 223 139 32 chrX 13105424 13105477 -163868663 + MER69 DNA AcHobo 526 572 -1954 1027 140 35 5 chrX 13105475 13105676 -163868464 + MER69 DNA AcHobo 2319 2525 -1 * 850 211 43 34 chrX 13105773 13105981 -163868159 - MER63A DNA MER1_type 0 210 1 2157 141 0 0 chrX 13106265 13106577 -163867563 - AluSx SINE Alu 0 312 1 574 184 69 46 chrX 13106777 13106951 -163867189 - MER104 DNA MER2_type -1 179 2 187 366 11 32 chrX 13106996 13107089 -163867051 - MIR SINE MIR -75 133 43 2148 88 0 69 chrX 13107283 13107603 -163866537 - AluSx SINE Alu -14 298 1 304 301 93 22 chrX 13107705 13107888 -163866252 + MIR SINE MIR 61 256 -6 869 168 76 56 chrX 13107992 13108040 -163866100 - MER3 DNA MER1_type -8 201 155 1576 165 72 7 chrX 13108040 13108331 -163865809 + AluJb SINE Alu 1 310 -2 869 168 76 56 chrX 13108331 13108479 -163865661 - MER3 DNA MER1_type -54 155 1 259 164 14 41 chrX 13109423 13109496 -163864644 - L1ME4a LINE L1 -49 6072 6002 1948 176 61 38 chrX 13109935 13110189 -163863951 - L1MB7 LINE L1 0 6184 5914 2009 84 28 39 chrX 13110189 13110499 -163863641 + AluSx SINE Alu 1 307 0 1948 176 61 38 chrX 13110499 13110670 -163863470 - L1MB7 LINE L1 -270 5914 5748 1042 191 71 0 chrX 13110671 13110896 -163863244 - L1MB7 LINE L1 -1338 4808 4568 1528 112 19 0 chrX 13111145 13111359 -163862781 - MER20 DNA MER1_type -1 218 1 637 265 71 25 chrX 13111790 13112028 -163862112 - MER112 DNA MER1_type -11 249 1 2185 83 0 4 chrX 13112314 13112591 -163861549 + AluY SINE Alu 18 293 -18 669 171 86 0 chrX 13112591 13112708 -163861432 + FLAM_A SINE Alu 2 128 -5 1368 198 90 7 chrX 13113136 13113424 -163860716 + AluJo SINE Alu 1 312 0 263 181 18 0 chrX 13113822 13113878 -163860262 - MIR3 SINE MIR -48 160 103 1978 117 59 61 chrX 13113880 13114289 -163859851 - L1MC2 LINE L1 0 6344 5937 2139 187 21 27 chrX 13114289 13114892 -163859248 - L1MC2 LINE L1 -743 5403 4856 574 285 56 40 chrX 13114961 13115210 -163858930 + MIR SINE MIR 5 257 -5 681 206 36 73 chrX 13115387 13115606 -163858534 + L1ME2 LINE L1 5945 6155 -9 1050 206 31 50 chrX 13115628 13115949 -163858191 + L1MC5 LINE L1 7609 7923 -38 1963 66 0 0 chrX 13116076 13116320 -163857820 - L1PA6 LINE L1 -5 6149 5906 955 139 53 43 chrX 13116331 13116518 -163857622 - L1MD2 LINE L1 -10 6349 6161 261 0 0 0 chrX 13116525 13116554 -163857586 + (TG)n Simple_repeat Simple_repeat 2 30 0 608 29 0 0 chrX 13116725 13116793 -163857347 + U4 snRNA snRNA 1 68 -77 1329 148 21 0 chrX 13117253 13117496 -163856644 + L1MA7 LINE L1 6044 6291 0 238 290 99 8 chrX 13118016 13118147 -163855993 - L1ME4a LINE L1 -2 6119 5977 295 274 29 20 chrX 13118297 13118399 -163855741 + L2 LINE L2 3210 3312 -1 323 261 33 0 chrX 13118541 13118633 -163855507 + MIR SINE MIR 41 135 -127 263 246 123 101 chrX 13118620 13118848 -163855292 - L2 LINE L2 -30 3283 3051 * 1812 153 29 13 chrX 13118872 13119179 -163854961 + AluJb SINE Alu 1 312 0 269 202 167 12 chrX 13119213 13119297 -163854843 - MER112 DNA MER1_type -7 253 157 1224 166 187 18 chrX 13119899 13120183 -163853957 + MER58B DNA MER1_type 5 336 -5 1673 179 140 19 chrX 13321413 13321842 -163652298 - MLT2B2 LTR ERVL -40 480 1 341 366 11 5 chrX 13321842 13322028 -163652112 - L1MC/D LINE L1 -2185 5623 5437 462 307 26 26 chrX 13322053 13322281 -163651859 - L1MC/D LINE L1 -762 5384 5157 649 229 66 16 chrX 13322436 13322619 -163651521 - HsTC2 DNA Tc2 -1092 806 615 641 133 37 0 chrX 13322750 13323062 -163651078 + (TA)n Simple_repeat Simple_repeat 1 323 0 264 56 74 19 chrX 13323093 13323147 -163650993 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 187 146 36 0 chrX 13323187 13323242 -163650898 + (TA)n Simple_repeat Simple_repeat 2 58 0 376 263 76 36 chrX 13323433 13323683 -163650457 + L2 LINE L2 3000 3305 -8 2125 177 55 2 chrX 13323808 13324243 -163649897 + L1MB8 LINE L1 5581 6038 -140 772 143 0 7 chrX 13324342 13324489 -163649651 + L1MB8 LINE L1 6028 6173 -5 867 254 36 14 chrX 13324630 13324909 -163649231 + HsTC2 DNA Tc2 300 584 -1314 689 307 125 4 chrX 13325116 13325396 -163648744 + LTR16C LTR ERVL 18 331 -160 1190 146 26 0 chrX 13325614 13325806 -163648334 - MER20 DNA MER1_type 0 219 23 2335 119 14 24 chrX 13326253 13326622 -163647518 + MLT1A1 LTR MaLR 1 365 0 268 278 9 104 chrX 13326756 13326968 -163647172 + MLT1K LTR MaLR 397 588 0 1964 123 10 10 chrX 13327006 13327298 -163646842 - AluJb SINE Alu -20 292 1 22 0 0 0 chrX 13327430 13327452 -163646688 + AT_rich Low_complexity Low_complexity 1 22 0 7898 13 0 0 chrX 13327461 13329057 -163645083 + L1PA3 LINE L1 4560 6155 0 626 209 9 9 chrX 13329077 13329187 -163644953 + FLAM_A SINE Alu 1 110 -32 1415 153 48 8 chrX 13329280 13329528 -163644612 - AluJb SINE Alu -10 302 45 2227 74 0 3 chrX 13329742 13330090 -163644050 + AluY SINE Alu 1 347 0 2367 116 16 5 chrX 13330102 13330474 -163643666 - L1PA16 LINE L1 -9 6157 5782 1827 196 14 8 chrX 13330977 13331340 -163642800 + MLT1A1 LTR MaLR 1 365 0 2579 139 4 60 chrX 13334035 13334076 -163640064 - MSTC LTR MaLR 0 428 386 2308 115 3 3 chrX 13334076 13334388 -163639752 + AluSx SINE Alu 1 312 0 2579 139 4 60 chrX 13334388 13334799 -163639341 - MSTC LTR MaLR -42 386 1 320 252 137 7 chrX 13335703 13335842 -163638298 - L2 LINE L2 -45 3268 3112 1760 125 3 71 chrX 13335929 13336226 -163637914 + AluJb SINE Alu 33 309 -3 2058 147 28 14 chrX 13336444 13336804 -163637336 + MLT1A1 LTR MaLR 1 365 0 384 157 67 11 chrX 13336893 13336982 -163637158 - MER53 DNA DNA -94 95 2 262 278 0 14 chrX 13336995 13337067 -163637073 + LTR16C LTR ERVL 419 489 -2 487 267 45 40 chrX 13337212 13337421 -163636719 - MIR SINE MIR -34 228 16 2237 115 0 0 chrX 13337620 13337915 -163636225 + AluSx SINE Alu 1 295 -17 400 203 137 26 chrX 13337924 13338077 -163636063 - L1MC5 LINE L1 -48 7913 7744 724 178 20 14 chrX 13338088 13338234 -163635906 + MLT1D LTR MaLR 45 191 -314 1563 114 20 4 chrX 13338344 13338590 -163635550 - THE1C LTR MaLR -125 250 1 361 236 0 0 chrX 13338591 13338663 -163635477 + MLT1D LTR MaLR 338 409 -96 258 103 0 0 chrX 13338668 13338707 -163635433 - L1MB5 LINE L1 -108 6066 6028 21 0 0 0 chrX 13338713 13338734 -163635406 + AT_rich Low_complexity Low_complexity 1 21 0 2244 112 10 0 chrX 13338881 13339176 -163634964 - AluSg SINE Alu -12 298 1 996 268 10 3 chrX 13339208 13339503 -163634637 - L1MC4a LINE L1 -1893 5915 5619 213 39 0 0 chrX 13339806 13339832 -163634308 + (T)n Simple_repeat Simple_repeat 1 26 0 197 327 109 55 chrX 13340672 13340892 -163633248 + MIR SINE MIR 14 245 -17 1629 245 114 16 chrX 13340997 13341529 -163632611 + MER77 LTR ERV1 40 600 -5 387 285 52 17 chrX 13342621 13342793 -163631347 - MER5B DNA MER1_type 0 178 1 458 278 272 0 chrX 13343982 13344151 -163629989 + MIR SINE MIR 35 249 -13 617 271 81 55 chrX 13344168 13344552 -163629588 + MLT1K LTR MaLR 195 588 0 30 0 0 0 chrX 13344768 13344798 -163629342 + AT_rich Low_complexity Low_complexity 1 30 0 3911 22 0 4 chrX 13344798 13345255 -163628885 - L1PA3 LINE L1 -3 6152 5698 228 290 71 13 chrX 13345833 13345988 -163628152 + L1MC/D LINE L1 5755 5918 -1890 606 237 199 6 chrX 13346162 13346318 -163627822 - MER5A DNA MER1_type 0 189 4 2192 104 7 14 chrX 13346368 13346665 -163627475 + AluSx SINE Alu 1 295 -17 464 210 80 0 chrX 13346666 13346766 -163627374 - MER58B DNA MER1_type -31 310 203 190 299 28 84 chrX 13346834 13346875 -163627265 - MIR SINE MIR -16 246 204 1854 186 79 20 chrX 13346875 13347316 -163626824 + MLT1C LTR MaLR 1 467 0 190 299 28 84 chrX 13347316 13347381 -163626759 - MIR SINE MIR -58 204 146 964 237 147 100 chrX 13347381 13347536 -163626604 + MER50 LTR ERV1 1 147 -587 1906 98 9 89 chrX 13347536 13347752 -163626388 + AluSg SINE Alu 10 193 -117 2542 78 0 0 chrX 13347752 13348061 -163626079 + AluY SINE Alu 2 310 -1 1906 98 9 89 chrX 13348061 13348169 -163625971 + AluSg SINE Alu 193 308 -2 964 237 147 100 chrX 13348169 13348692 -163625448 + MER50 LTR ERV1 147 711 -23 256 273 0 15 chrX 13348692 13348758 -163625382 - MIR SINE MIR -112 150 86 212 248 147 64 chrX 13348775 13348884 -163625256 - L2 LINE L2 -1 3271 3154 239 287 61 61 chrX 13348916 13349031 -163625109 - MIR3 SINE MIR -82 126 12 1115 185 77 7 chrX 13349337 13349624 -163624516 - MER33 DNA MER1_type -17 307 1 374 298 7 28 chrX 13349626 13349767 -163624373 + L2 LINE L2 2503 2640 -674 881 215 100 51 chrX 13349768 13350079 -163624061 - MLT1A1 LTR MaLR -39 326 1 1769 159 37 62 chrX 13350165 13350554 -163623586 - LTR37A LTR ERV1 0 426 48 981 204 18 36 chrX 13350554 13350774 -163623366 - MER20 DNA MER1_type -3 216 1 1769 159 37 62 chrX 13350774 13350817 -163623323 - LTR37A LTR ERV1 -378 48 5 476 285 136 8 chrX 13350824 13351066 -163623074 + L2 LINE L2 2950 3222 -91 258 263 26 13 chrX 13352091 13352167 -163621973 + MIR SINE MIR 99 175 -87 1800 121 62 64 chrX 13352748 13353203 -163620937 + THE1C LTR MaLR 1 428 0 275 83 0 0 chrX 13353608 13353656 -163620484 + L1MA3 LINE L1 6258 6305 0 555 239 159 6 chrX 13353861 13354024 -163620116 - MER5A DNA MER1_type -1 188 1 7264 40 8 11 chrX 13354029 13354977 -163619163 + L1PA6 LINE L1 5207 6151 -3 707 226 34 34 chrX 13355005 13355182 -163618958 - MER5B DNA MER1_type -1 177 1 714 194 0 8 chrX 13355493 13355617 -163618523 - FLAM_A SINE Alu -7 126 4 893 148 49 12 chrX 13355681 13355843 -163618297 - MER5B DNA MER1_type -4 174 7 253 216 21 0 chrX 13355910 13355968 -163618172 + MER5B DNA MER1_type 126 178 0 322 266 78 0 chrX 13356036 13356164 -163617976 + L1ME4a LINE L1 5953 6090 -31 195 69 0 0 chrX 13356779 13356808 -163617332 + (TC)n Simple_repeat Simple_repeat 2 30 0 5167 252 38 18 chrX 13356920 13359411 -163614729 + L1M3f LINE L1 252 2794 -3534 774 115 0 0 chrX 13359408 13359530 -163614610 + L1MA8 LINE L1 5165 5286 -860 * 3531 172 23 15 chrX 13359534 13360285 -163613855 + L1MA8 LINE L1 5532 6288 -3 971 266 174 38 chrX 13360292 13361032 -163613108 + HAL1 LINE L1 1566 2406 -101 192 77 0 0 chrX 13361385 13361411 -163612729 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2347 56 0 3 chrX 13361424 13361710 -163612430 - AluY SINE Alu -26 285 1 291 28 0 0 chrX 13362620 13362656 -163611484 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1780 160 4 7 chrX 13362663 13362944 -163611196 - AluJb SINE Alu -32 280 1 721 174 36 7 chrX 13362978 13363116 -163611024 + MLT1A2 LTR MaLR 182 323 -51 21 0 0 0 chrX 13363116 13363137 -163611003 + AT_rich Low_complexity Low_complexity 1 21 0 660 191 20 0 chrX 13363137 13363284 -163610856 - L1MB2 LINE L1 -2 6169 6020 200 200 0 0 chrX 13363770 13363805 -163610335 + (CAAG)n Simple_repeat Simple_repeat 2 36 0 192 179 0 0 chrX 13363807 13363846 -163610294 + GA-rich Low_complexity Low_complexity 4 42 0 936 305 35 35 chrX 13364223 13364626 -163609514 - LTR16A LTR ERVL -18 432 30 331 206 113 21 chrX 13365069 13365166 -163608974 + MIR SINE MIR 86 191 -71 21 0 0 0 chrX 13365239 13365260 -163608880 + AT_rich Low_complexity Low_complexity 1 21 0 338 270 162 60 chrX 13365260 13365445 -163608695 + MIR SINE MIR 59 262 0 182 211 53 0 chrX 13365452 13365490 -163608650 + MIR SINE MIR 223 262 0 1028 178 27 32 chrX 13365705 13365890 -163608250 + MER5A DNA MER1_type 1 184 -5 186 256 0 0 chrX 13366123 13366162 -163607978 + L2 LINE L2 3265 3303 -10 1991 144 30 62 chrX 13367617 13367864 -163606276 - MLT1B LTR MaLR 0 390 159 1675 116 8 21 chrX 13367864 13368106 -163606034 + AluJb SINE Alu 64 302 -10 1991 144 30 62 chrX 13368106 13368261 -163605879 - MLT1B LTR MaLR -231 159 1 1367 331 122 30 chrX 13368416 13369586 -163604554 - L2 LINE L2 -204 3068 1795 983 265 32 29 chrX 13369594 13369941 -163604199 - LTR16C LTR ERVL 0 491 144 295 73 0 0 chrX 13369991 13370032 -163604108 + MADE1 DNA Mariner 40 80 0 24 32 0 0 chrX 13370414 13370445 -163603695 + AT_rich Low_complexity Low_complexity 1 31 0 231 239 211 0 chrX 13371148 13371257 -163602883 - MLT1L LTR MaLR -25 590 459 504 295 137 24 chrX 13371289 13371618 -163602522 - MLT1L LTR MaLR -249 366 1 835 286 47 0 chrX 13372354 13372588 -163601552 + MIR SINE MIR 18 262 0 1120 266 101 43 chrX 13373371 13373905 -163600235 - MLT1L LTR MaLR -12 603 39 363 248 71 20 chrX 13373941 13374152 -163599988 + L2 LINE L2 3042 3272 0 543 248 0 0 chrX 13374784 13374897 -163599243 + FLAM_C SINE Alu 1 113 -30 656 65 71 12 chrX 13374899 13375067 -163599073 + (TA)n Simple_repeat Simple_repeat 2 179 0 254 32 0 0 chrX 13375071 13375102 -163599038 - HERVL LTR ERVL -2487 3167 3137 973 91 0 0 chrX 13375150 13375271 -163598869 + AluY SINE Alu 1 121 -190 528 68 75 7 chrX 13375306 13375453 -163598687 + (TA)n Simple_repeat Simple_repeat 1 157 0 1671 204 232 17 chrX 13376383 13376904 -163597236 + MER92B LTR ERV1 4 636 0 1053 143 68 13 chrX 13377249 13377486 -163596654 - MER33 DNA MER1_type -14 310 61 611 266 88 35 chrX 13377565 13378044 -163596096 - LTR33A LTR ERVL -28 495 1 21 0 0 0 chrX 13378169 13378190 -163595950 + AT_rich Low_complexity Low_complexity 1 21 0 1207 229 88 37 chrX 13378773 13379205 -163594935 - LTR16A1 LTR ERVL 0 457 4 954 185 11 6 chrX 13379803 13379981 -163594159 - MER63A DNA MER1_type -31 179 1 267 349 118 33 chrX 13380806 13380958 -163593182 - L2 LINE L2 -7 3265 3101 482 284 102 10 chrX 13381213 13381410 -163592730 - MIR SINE MIR -27 235 21 1719 185 66 46 chrX 13382076 13382529 -163591611 + L1ME3 LINE L1 5600 6061 -101 672 271 37 7 chrX 13382612 13382885 -163591255 + L1ME4a LINE L1 5602 5882 -239 5556 101 49 3 chrX 13382895 13384136 -163590004 + L1PA10 LINE L1 4464 5750 -418 1199 108 34 0 chrX 13384136 13384312 -163589828 + L1PA10 LINE L1 5985 6166 -2 207 314 0 0 chrX 13384661 13384747 -163589393 + A-rich Low_complexity Low_complexity 1 86 0 358 254 107 45 chrX 13385625 13385802 -163588338 + L1ME4a LINE L1 5931 6118 -3 23 0 0 0 chrX 13385991 13386014 -163588126 + AT_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chrX 13387114 13387149 -163586991 + (TG)n Simple_repeat Simple_repeat 1 35 0 499 168 0 28 chrX 13387328 13387435 -163586705 - MLT1C LTR MaLR -2 465 362 847 269 4 18 chrX 13388375 13388602 -163585538 - MER58A DNA MER1_type 0 224 1 313 291 90 38 chrX 13388771 13389060 -163585080 - L1M4 LINE L1 -1768 4378 4075 963 223 117 31 chrX 13389484 13390124 -163584016 + LTR50 LTR ERVL 2 779 -16 231 146 0 0 chrX 13390293 13390334 -163583806 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 1024 182 57 54 chrX 13390342 13390631 -163583509 + MER47B DNA MER2_type 26 418 0 204 97 0 0 chrX 13391550 13391581 -163582559 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 344 294 43 0 chrX 13392037 13392129 -163582011 + L2 LINE L2 3207 3302 -11 1952 106 66 17 chrX 13393125 13393474 -163580666 - THE1C LTR MaLR -2 373 8 383 274 77 46 chrX 13394002 13394345 -163579795 - L1MC/D LINE L1 -552 5593 5316 2457 96 8 11 chrX 13394345 13394701 -163579439 + THE1A LTR MaLR 1 355 0 383 274 77 46 chrX 13394701 13394742 -163579398 - L1MC/D LINE L1 -829 5316 5278 337 258 35 71 chrX 13394895 13395553 -163578587 - L1MC/D LINE L1 -872 1618 717 1400 264 120 2 chrX 13395593 13396058 -163578082 - LTR33 LTR ERVL 0 521 2 669 330 37 77 chrX 13396059 13396452 -163577688 - L1MC/D LINE L1 -5422 697 326 2183 98 0 0 chrX 13396452 13396728 -163577412 - AluSc SINE Alu -33 276 1 669 330 37 77 chrX 13396728 13396825 -163577315 - L1MC/D LINE L1 -5793 326 227 323 296 139 0 chrX 13396940 13397112 -163577028 + Charlie7 DNA MER1_type 122 317 -2295 1383 245 73 36 chrX 13397113 13397826 -163576314 + Charlie7 DNA MER1_type 1427 2165 -447 296 250 119 0 chrX 13397907 13397991 -163576149 - LTR16B LTR ERVL -370 94 1 232 283 28 19 chrX 13399078 13399184 -163574956 - MLT1J1 LTR MaLR 0 446 340 253 352 57 29 chrX 13399207 13399312 -163574828 + MIR SINE MIR 8 115 -147 903 200 43 85 chrX 13399312 13399430 -163574710 + L1MD3 LINE L1 7694 7815 -180 2286 84 47 12 chrX 13399430 13399773 -163574367 + THE1A LTR MaLR 1 355 0 12156 79 4 6 chrX 13399773 13401356 -163572784 + THE1A-int LTR MaLR 1 1580 0 2239 119 14 14 chrX 13401356 13401710 -163572430 + THE1A LTR MaLR 1 354 -1 903 200 43 85 chrX 13401710 13401894 -163572246 + L1MD3 LINE L1 7812 7985 -10 1673 196 13 48 chrX 13402227 13402605 -163571535 - MLT1A1 LTR MaLR 0 365 1 370 280 72 0 chrX 13403263 13403388 -163570752 + MIR SINE MIR 112 245 -17 346 289 103 51 chrX 13403464 13403620 -163570520 + MIR SINE MIR 20 183 -79 980 241 14 9 chrX 13404141 13404361 -163569779 + MER58A DNA MER1_type 4 224 0 42261 39 3 1 chrX 13404493 13410526 -163563614 + L1PA4 LINE L1 1 6048 -107 606 255 137 5 chrX 13411433 13411645 -163562495 + MIR SINE MIR 7 246 -16 198 143 0 0 chrX 13411739 13411774 -163562366 + (TG)n Simple_repeat Simple_repeat 1 35 0 874 183 24 6 chrX 13411836 13412005 -163562135 + MER5B DNA MER1_type 7 178 0 423 235 10 0 chrX 13412404 13412496 -163561644 - LTR16C LTR ERVL -3 488 396 818 189 0 123 chrX 13412496 13412740 -163561400 + MER20 DNA MER1_type 1 214 -5 887 263 35 61 chrX 13412745 13413057 -163561083 - LTR16C LTR ERVL -88 403 100 197 308 46 15 chrX 13413221 13413286 -163560854 + L2 LINE L2 2772 2838 -476 793 239 18 0 chrX 13413357 13413524 -163560616 - MER5B DNA MER1_type -2 176 7 229 339 78 26 chrX 13413531 13413646 -163560494 + L2 LINE L2 3149 3269 -3 247 303 45 11 chrX 13413697 13413786 -163560354 - MIR SINE MIR -6 256 165 221 0 0 33 chrX 13413802 13413832 -163560308 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 589 13 26 0 chrX 13415749 13415827 -163558313 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 2245 110 7 7 chrX 13415871 13416358 -163557782 + AluSg SINE Alu 1 310 0 2248 108 0 10 chrX 13416410 13416717 -163557423 - AluSg SINE Alu -4 306 3 2529 33 0 0 chrX 13417040 13417339 -163556801 - L1PA3 LINE L1 0 6155 5857 1832 219 50 44 chrX 13417825 13418044 -163556096 - L1ME3 LINE L1 -9 6153 5937 2376 105 0 0 chrX 13418044 13418348 -163555792 - AluSp SINE Alu -9 304 1 1832 219 50 44 chrX 13418348 13418694 -163555446 - L1ME3 LINE L1 -225 5937 5585 21 0 0 0 chrX 13419092 13419113 -163555027 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chrX 13419313 13419338 -163554802 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 5306 136 27 36 chrX 13419694 13419835 -163554305 + L1MA7 LINE L1 5049 5190 -1101 2330 57 0 10 chrX 13419835 13420135 -163554005 + L1PA7 LINE L1 5858 6154 0 5306 136 27 36 chrX 13420135 13421202 -163552938 + L1MA7 LINE L1 5190 6248 -43 331 215 89 103 chrX 13421205 13421563 -163552577 - L1M1 LINE L1 -4218 2110 1758 3962 128 169 37 chrX 13421563 13422554 -163551586 - MER11B LTR ERVK -11 1225 1 5391 213 29 5 chrX 13422554 13424254 -163549886 - L1M1 LINE L1 -4065 1263 14 14547 118 28 6 chrX 13424265 13426583 -163547557 + Tigger1 DNA MER2_type 50 2417 -1 539 236 35 23 chrX 13426623 13426797 -163547343 + MER96B DNA MER1_type? 1 176 -241 1411 270 46 15 chrX 13426832 13427245 -163546895 + LTR40a LTR ERVL 90 519 0 241 312 127 21 chrX 13427388 13427577 -163546563 - L2 LINE L2 -495 2819 2611 433 314 144 10 chrX 13427629 13427823 -163546317 - MIR SINE MIR -33 229 10 3899 173 21 19 chrX 13428730 13429499 -163544641 - L1MB8 LINE L1 -5 6173 5404 980 145 17 11 chrX 13429501 13429680 -163544460 - MLT2D LTR ERVL -234 180 1 1684 210 41 21 chrX 13429748 13430167 -163543973 - MER63B DNA MER1_type -3 433 7 705 205 205 12 chrX 13430211 13430377 -163543763 - MIR SINE MIR -56 206 9 1711 173 27 18 chrX 13431446 13431781 -163542359 - MER58B DNA MER1_type -3 338 1 280 209 11 66 chrX 13432057 13432148 -163541992 - LTR16A1 LTR ERVL 0 457 372 3419 116 16 0 chrX 13432150 13432661 -163541479 + L1PA16 LINE L1 5640 6158 -8 207 0 0 0 chrX 13432672 13432695 -163541445 + (TAA)n Simple_repeat Simple_repeat 3 25 0 582 195 92 6 chrX 13432700 13432864 -163541276 - L1MC/D LINE L1 -426 5816 5639 281 185 19 0 chrX 13432918 13432972 -163541168 - L3 LINE CR1 -11 1566 1512 408 204 43 11 chrX 13434573 13434666 -163539474 + MIR SINE MIR 166 261 -1 823 272 31 97 chrX 13435892 13436347 -163537793 + MLT1L LTR MaLR 97 615 0 305 314 159 14 chrX 13436585 13436881 -163537259 + MLT1H LTR MaLR 12 350 -199 224 211 225 0 chrX 13436985 13437056 -163537084 + MIR SINE MIR 16 102 -160 204 373 27 0 chrX 13437040 13437115 -163537025 - MIR SINE MIR -185 77 1 * 328 299 113 48 chrX 13437703 13437994 -163536146 + L1MC4a LINE L1 5629 5938 -1870 1598 200 66 2 chrX 13438176 13438571 -163535569 - L1MD2 LINE L1 -10 6349 5930 295 276 41 41 chrX 13439423 13439521 -163534619 - L2 LINE L2 -6 3266 3169 496 296 107 35 chrX 13439736 13440147 -163533993 - L1ME4a LINE L1 -271 5850 5412 1034 137 6 48 chrX 13440267 13440435 -163533705 - AluJb SINE Alu -23 289 129 207 0 0 0 chrX 13441523 13441546 -163532594 + (A)n Simple_repeat Simple_repeat 1 23 0 764 169 38 47 chrX 13441666 13441879 -163532261 + L1MB8 LINE L1 5962 6172 -6 4338 128 21 53 chrX 13441935 13442405 -163531735 - L1MA7 LINE L1 0 6291 5858 2789 129 12 14 chrX 13442405 13442832 -163531308 - MSTB LTR MaLR 0 426 1 4338 128 21 53 chrX 13442832 13443210 -163530930 - L1MA7 LINE L1 -433 5858 5470 1405 240 9 0 chrX 13443378 13443720 -163530420 + MER99 DNA DNA 31 375 -453 1719 203 18 52 chrX 13443817 13444275 -163529865 + MER99 DNA DNA 386 827 -1 1128 156 16 0 chrX 13444280 13444466 -163529674 + MER5A DNA MER1_type 1 189 0 948 260 48 0 chrX 13444467 13444717 -163529423 + LTR16C LTR ERVL 221 482 -9 305 276 86 35 chrX 13444760 13444876 -163529264 + MIR SINE MIR 16 137 -71 545 213 98 27 chrX 13445189 13445372 -163528768 - MLT1J2 LTR MaLR -232 218 23 1859 234 45 10 chrX 13445798 13446311 -163527829 + L1ME3A LINE L1 5629 6159 -11 331 272 200 0 chrX 13446666 13446791 -163527349 - MIR SINE MIR -101 161 12 2452 180 52 103 chrX 13446793 13447207 -163526933 - MLT1E1 LTR MaLR 0 654 287 2166 144 6 18 chrX 13447207 13447548 -163526592 + MER1B DNA MER1_type 1 337 0 2452 180 52 103 chrX 13447548 13447822 -163526318 - MLT1E1 LTR MaLR -367 287 1 237 278 111 28 chrX 13448061 13448169 -163525971 + L2 LINE L2 2358 2474 -840 671 323 53 25 chrX 13448260 13448656 -163525484 + LTR16C LTR ERVL 85 491 0 191 386 76 14 chrX 13448735 13448945 -163525195 + L2 LINE L2 2581 2803 -511 471 254 111 8 chrX 13448950 13449076 -163525064 - L2 LINE L2 0 3272 3134 834 144 50 108 chrX 13449152 13449374 -163524766 - MER3 DNA MER1_type 0 209 1 226 359 7 28 chrX 13449569 13449711 -163524429 - L2 LINE L2 -428 2886 2748 322 331 65 7 chrX 13449771 13449925 -163524215 - L1MC4a LINE L1 -1877 5931 5769 607 329 46 68 chrX 13450259 13450605 -163523535 - L2 LINE L2 -637 2677 2342 500 155 194 0 chrX 13450605 13450708 -163523432 + FLAM_A SINE Alu 1 123 -10 607 329 46 68 chrX 13450708 13450817 -163523323 - L2 LINE L2 -972 2342 2232 30 0 0 0 chrX 13450868 13450898 -163523242 + AT_rich Low_complexity Low_complexity 1 30 0 5546 97 0 19 chrX 13450959 13451133 -163523007 + L1PB1 LINE L1 5318 5494 -657 2321 98 0 10 chrX 13451133 13451438 -163522702 + AluY SINE Alu 1 302 -9 5546 97 0 19 chrX 13451438 13451748 -163522392 + L1PB1 LINE L1 5494 5808 -343 351 113 0 0 chrX 13451748 13451801 -163522339 + (TA)n Simple_repeat Simple_repeat 1 53 0 5546 97 0 19 chrX 13451801 13452165 -163521975 + L1PB1 LINE L1 5808 6151 0 369 0 0 0 chrX 13452169 13452210 -163521930 + (CA)n Simple_repeat Simple_repeat 2 42 0 4353 144 28 3 chrX 13452210 13452555 -163521585 + L1PB3 LINE L1 5424 5759 -395 486 0 0 0 chrX 13452555 13452609 -163521531 + (TA)n Simple_repeat Simple_repeat 2 55 0 4353 144 28 3 chrX 13452609 13452960 -163521180 + L1PB3 LINE L1 5759 6153 -1 2229 123 0 0 chrX 13453858 13454151 -163519989 - AluSx SINE Alu -19 293 1 382 321 129 0 chrX 13454367 13454694 -163519446 - LTR16C LTR ERVL 0 491 114 1838 196 146 7 chrX 13454740 13455158 -163518982 - MLT1D LTR MaLR -29 476 1 2457 41 3 38 chrX 13455173 13455489 -163518651 - AluY SINE Alu -6 305 1 278 219 0 0 chrX 13456471 13456535 -163517605 + MLT1I LTR MaLR 70 133 -276 383 222 11 48 chrX 13456790 13456909 -163517231 + MLT1H LTR MaLR 432 533 -16 2209 119 0 3 chrX 13457283 13457593 -163516547 + AluSq SINE Alu 1 309 -4 266 191 73 15 chrX 13461489 13461557 -163512583 + MIR SINE MIR 127 198 -64 467 245 79 45 chrX 13461905 13462170 -163511970 + L1ME LINE L1 5025 5298 -848 424 291 68 49 chrX 13462175 13462628 -163511512 + L1ME LINE L1 5329 5790 -331 689 171 188 6 chrX 13462631 13462801 -163511339 - MER20 DNA MER1_type 0 219 19 1882 291 63 9 chrX 13464392 13464953 -163509187 + L2 LINE L2 2176 2815 -498 2590 45 0 3 chrX 13464953 13465264 -163508876 + AluY SINE Alu 1 310 -1 1882 291 63 9 chrX 13465264 13465643 -163508497 + L2 LINE L2 2815 3172 -141 281 209 86 48 chrX 13465980 13466085 -163508055 + LTR33A LTR ERVL 407 515 -8 227 284 202 9 chrX 13466154 13466263 -163507877 + LTR33 LTR ERVL 44 173 -348 3626 141 7 84 chrX 13466610 13467179 -163506961 - L1MA10 LINE L1 -40 6294 5791 492 99 0 0 chrX 13467179 13467250 -163506890 + (TA)n Simple_repeat Simple_repeat 2 72 0 3626 141 7 84 chrX 13467250 13467405 -163506735 - L1MA10 LINE L1 -543 5791 5626 336 248 139 57 chrX 13467408 13467638 -163506502 - HAL1 LINE L1 -1427 1080 832 198 246 18 18 chrX 13469221 13469278 -163504862 - L2 LINE L2 0 3272 3216 258 325 31 56 chrX 13469373 13469533 -163504607 - L2 LINE L2 -168 3104 2949 226 386 103 25 chrX 13469593 13469912 -163504228 - L2 LINE L2 -722 2592 2249 2483 117 36 61 chrX 13470273 13470768 -163503372 + L1MB8 LINE L1 5691 6173 -5 22 0 0 0 chrX 13471096 13471118 -163503022 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chrX 13471387 13471410 -163502730 + AT_rich Low_complexity Low_complexity 1 23 0 421 267 31 56 chrX 13471419 13471580 -163502560 - MIR SINE MIR -27 235 79 239 0 0 0 chrX 13471921 13471954 -163502186 - L1PA2 LINE L1 -5 6150 6118 672 265 20 7 chrX 13472219 13472370 -163501770 - MER63A DNA MER1_type -9 201 49 1333 237 181 50 chrX 13473059 13473143 -163500997 + MLT1E LTR MaLR 1 73 -520 2110 92 0 4 chrX 13473143 13473487 -163500653 + AluSx SINE Alu 14 356 0 1333 237 181 50 chrX 13473487 13473925 -163500215 + MLT1E LTR MaLR 73 593 0 651 230 173 0 chrX 13474122 13474313 -163499827 - REP3 LTR ERV 0 562 339 393 121 30 0 chrX 13474314 13474380 -163499760 - LTR37A LTR ERV1 -259 167 100 524 291 111 5 chrX 13474451 13474650 -163499490 - MIR SINE MIR -41 221 2 953 109 32 18 chrX 13475152 13475315 -163498825 + MER20 DNA MER1_type 2 175 -44 2331 53 3 7 chrX 13475950 13476295 -163497845 + AluY SINE Alu 1 344 0 2047 178 21 5 chrX 13476789 13477166 -163496974 + MER82 DNA MER2_type 1 383 -270 440 332 28 90 chrX 13478807 13479096 -163495044 - L2 LINE L2 -3 3269 2999 253 240 10 21 chrX 13479544 13479640 -163494500 - HAL1 LINE L1 -143 2364 2270 746 221 102 22 chrX 13480046 13480272 -163493868 + MIR SINE MIR 19 262 0 519 307 58 33 chrX 13480463 13480792 -163493348 - HAL1 LINE L1 -621 1886 1550 272 245 0 0 chrX 13480820 13480873 -163493267 - MER94 DNA DNA -4 130 78 293 323 70 28 chrX 13480939 13481224 -163492916 - HAL1 LINE L1 -978 1529 1233 1741 130 68 52 chrX 13482049 13482418 -163491722 + THE1C LTR MaLR 1 375 0 942 225 121 70 chrX 13482723 13483096 -163491044 + LTR16A LTR ERVL 59 450 0 1888 213 44 80 chrX 13483398 13484050 -163490090 - MLT1E2 LTR MaLR 0 626 1 211 290 48 16 chrX 13484327 13484389 -163489751 - MER5A DNA MER1_type -65 124 61 500 300 54 61 chrX 13484449 13484762 -163489378 + L2 LINE L2 2913 3223 -90 644 281 25 46 chrX 13485325 13485521 -163488619 + LTR33 LTR ERVL 22 213 -308 857 331 41 25 chrX 13486636 13486999 -163487141 - LTR16C LTR ERVL -4 487 119 183 363 30 30 chrX 13487249 13487384 -163486756 - L2 LINE L2 -836 2478 2344 216 167 71 0 chrX 13488438 13488480 -163485660 - MIR3 SINE MIR -26 182 138 918 208 62 5 chrX 13488511 13488703 -163485437 - MER58A DNA MER1_type -16 208 6 619 211 312 12 chrX 13488716 13488963 -163485177 + MER5C DNA MER1_type 1 321 -3 402 289 62 7 chrX 13488967 13489109 -163485031 - MIR SINE MIR -62 146 11 3258 169 28 3 chrX 13490354 13490968 -163483172 + L1MB2 LINE L1 5543 6171 0 251 314 141 33 chrX 13491034 13491213 -163482927 + MIR3 SINE MIR 12 214 -48 285 135 0 0 chrX 13491237 13491289 -163482851 + (ATG)n Simple_repeat Simple_repeat 3 54 0 1309 209 46 61 chrX 13492025 13492370 -163481770 - MER58B DNA MER1_type 0 341 2 243 308 26 68 chrX 13492807 13492924 -163481216 + L2 LINE L2 3198 3309 -4 1370 217 117 16 chrX 13493339 13493708 -163480432 - L1ME LINE L1 -485 5679 5274 330 115 0 0 chrX 13494880 13494932 -163479208 + (CA)n Simple_repeat Simple_repeat 2 53 0 279 0 0 0 chrX 13496136 13496167 -163477973 + (CA)n Simple_repeat Simple_repeat 2 32 0 2108 163 11 3 chrX 13496178 13496539 -163477601 - MER47A DNA MER2_type -1 365 2 296 317 42 0 chrX 13496638 13496780 -163477360 - L1MC4a LINE L1 -1923 5885 5738 414 321 65 16 chrX 13496781 13496965 -163477175 - MLT1K LTR MaLR 0 588 396 1840 85 0 0 chrX 13497889 13498125 -163476015 - AluSc SINE Alu -3 306 71 2568 45 0 16 chrX 13498125 13498433 -163475707 - AluY SINE Alu -6 305 1 44 20 0 0 chrX 13498703 13498754 -163475386 + AT_rich Low_complexity Low_complexity 1 51 0 5050 158 34 62 chrX 13498823 13500015 -163474125 - L1PB3 LINE L1 -4 6150 4985 334 21 0 21 chrX 13500015 13500062 -163474078 - MADE1 DNA Mariner 0 80 35 5050 158 34 62 chrX 13500062 13500900 -163473240 - L1PB3 LINE L1 -1169 4985 4125 21 0 0 0 chrX 13502472 13502493 -163471647 + AT_rich Low_complexity Low_complexity 1 21 0 343 247 163 80 chrX 13502502 13502741 -163471399 + L1MC4a LINE L1 6180 6438 -1370 318 26 0 0 chrX 13502860 13502899 -163471241 + (TG)n Simple_repeat Simple_repeat 2 40 0 859 300 87 4 chrX 13502908 13503185 -163470955 + L1MC4 LINE L1 6713 7012 -1030 654 308 46 45 chrX 13503316 13503863 -163470277 + L1MC4 LINE L1 6923 7471 -571 353 211 0 0 chrX 13503884 13503960 -163470180 + L1MC5 LINE L1 7323 7398 -563 415 232 70 37 chrX 13504461 13504721 -163469419 + L1MC5 LINE L1 7604 7899 -143 64 14 0 0 chrX 13504878 13504949 -163469191 + AT_rich Low_complexity Low_complexity 1 71 0 640 268 26 83 chrX 13505476 13505861 -163468279 - L1MC5 LINE L1 -100 7861 7499 883 307 93 25 chrX 13505908 13506435 -163467705 - L1MC5 LINE L1 -1992 5816 5254 411 255 92 0 chrX 13507132 13507230 -163466910 - MIR SINE MIR -150 112 6 468 283 14 28 chrX 13507800 13507945 -163466195 - MIR SINE MIR -9 253 111 268 322 105 23 chrX 13508870 13509041 -163465099 - MLT1L LTR MaLR 0 615 431 259 300 33 33 chrX 13509245 13509365 -163464775 - MLT1L LTR MaLR -347 268 149 528 45 0 0 chrX 13509681 13509748 -163464392 + (TC)n Simple_repeat Simple_repeat 2 68 0 198 0 0 0 chrX 13510734 13510756 -163463384 + (CA)n Simple_repeat Simple_repeat 1 22 0 495 328 152 42 chrX 13510897 13511017 -163463123 - L3 LINE CR1 -42 1535 1430 294 29 0 0 chrX 13511017 13511052 -163463088 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 495 328 152 42 chrX 13511052 13511340 -163462800 - L3 LINE CR1 -147 1430 1082 322 306 47 72 chrX 13511579 13511772 -163462368 + MIR SINE MIR 20 207 -55 2579 58 0 3 chrX 13511936 13512248 -163461892 - AluY SINE Alu 0 311 1 2119 37 0 19 chrX 13512636 13512905 -163461235 - L1PA4 LINE L1 0 6155 5892 308 393 38 23 chrX 13513017 13513035 -163461105 - L1ME LINE L1 -314 5856 5840 1805 151 0 25 chrX 13513035 13513313 -163460827 - AluJo SINE Alu -39 273 3 308 393 38 23 chrX 13513313 13513559 -163460581 - L1ME LINE L1 -330 5840 5588 233 265 24 12 chrX 13513609 13513692 -163460448 - L1ME LINE L1 -652 5512 5429 1222 117 5 27 chrX 13513764 13513952 -163460188 - MLT1D LTR MaLR 0 505 322 605 146 219 0 chrX 13513950 13514073 -163460067 - MER20 DNA MER1_type -61 158 9 * 2497 113 17 3 chrX 13514751 13515096 -163459044 - THE1B LTR MaLR 0 364 15 7004 102 11 0 chrX 13515099 13516043 -163458097 - THE1B-int LTR MaLR 0 1580 627 4468 61 2 0 chrX 13516043 13516582 -163457558 - HERVL LTR ERVL -2431 3223 2684 1169 113 0 6 chrX 13516582 13516742 -163457398 - THE1B LTR MaLR -205 159 1 405 344 15 20 chrX 13518012 13518207 -163455933 + MIR SINE MIR 15 208 -54 348 24 0 0 chrX 13518277 13518318 -163455822 + (CA)n Simple_repeat Simple_repeat 2 42 0 989 226 19 14 chrX 13518542 13518750 -163455390 - MIR SINE MIR -45 217 9 342 0 0 0 chrX 13519373 13519411 -163454729 + (CA)n Simple_repeat Simple_repeat 2 39 0 961 232 5 31 chrX 13519689 13519913 -163454227 + MER20 DNA MER1_type 1 218 -1 276 290 49 91 chrX 13520838 13521176 -163452964 + L2 LINE L2 2675 3053 -260 2081 83 10 56 chrX 13521420 13521722 -163452418 - AluSc SINE Alu -21 288 1 854 321 62 25 chrX 13522051 13522406 -163451734 + MER90 LTR ERV1 201 568 -7 768 295 94 60 chrX 13523405 13523788 -163450352 + MLT1I LTR MaLR 1 396 -13 1052 164 53 43 chrX 13523844 13524051 -163450089 - MER3 DNA MER1_type 0 209 1 1347 170 18 0 chrX 13524207 13524425 -163449715 - Tigger3(Golem) DNA MER2_type -2 3027 2806 1936 149 0 0 chrX 13524651 13524960 -163449180 - AluSx SINE Alu 0 309 1 31 0 0 0 chrX 13524961 13524992 -163449148 + AT_rich Low_complexity Low_complexity 1 31 0 737 294 45 88 chrX 13525126 13525558 -163448582 - L1MDa LINE L1 -1318 5222 4773 207 0 0 0 chrX 13525558 13525581 -163448559 + (TTG)n Simple_repeat Simple_repeat 1 23 0 737 294 45 88 chrX 13525581 13525602 -163448538 - L1MDa LINE L1 -1767 4773 4753 2166 103 7 7 chrX 13525602 13525912 -163448228 - AluSg SINE Alu 0 310 1 737 294 45 88 chrX 13525912 13526182 -163447958 - L1MDa LINE L1 -1787 4753 4529 260 298 119 59 chrX 13526271 13526502 -163447638 - L1MDa LINE L1 -2217 4323 4107 345 62 0 0 chrX 13526502 13526550 -163447590 + (TG)n Simple_repeat Simple_repeat 1 48 0 260 298 119 59 chrX 13526550 13526803 -163447337 - L1MDa LINE L1 -2433 4107 3871 2540 68 3 10 chrX 13526803 13527114 -163447026 - AluSc SINE Alu 0 309 1 260 298 119 59 chrX 13527114 13528446 -163445694 - L1MDa LINE L1 -2669 3871 2390 30 45 0 0 chrX 13528488 13528532 -163445608 + AT_rich Low_complexity Low_complexity 1 44 0 219 69 0 0 chrX 13528753 13528782 -163445358 + (TC)n Simple_repeat Simple_repeat 1 29 0 246 275 25 83 chrX 13528840 13528960 -163445180 - HAL1 LINE L1 -850 1657 1545 280 347 130 14 chrX 13528980 13529196 -163444944 - MIR SINE MIR 0 262 22 1731 169 12 19 chrX 13529211 13529536 -163444604 - MER33 DNA MER1_type -1 323 1 553 273 54 44 chrX 13530268 13530473 -163443667 + MIR SINE MIR 1 207 -55 472 344 27 27 chrX 13530530 13530751 -163443389 + MIR SINE MIR 29 249 -13 276 317 37 49 chrX 13531903 13532067 -163442073 + MER5A DNA MER1_type 7 168 -21 993 290 63 33 chrX 13532199 13532596 -163441544 - MLT1J2 LTR MaLR -2 448 40 295 236 9 9 chrX 13533991 13534101 -163440039 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 863 266 82 0 chrX 13534135 13534368 -163439772 + MIR SINE MIR 3 254 -8 1123 119 0 0 chrX 13534369 13534547 -163439593 - AluSg/x SINE Alu 0 308 131 198 0 0 0 chrX 13534547 13534569 -163439571 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2162 93 7 0 chrX 13534569 13534848 -163439292 - AluSq SINE Alu -30 283 3 21 0 0 0 chrX 13534855 13534876 -163439264 + AT_rich Low_complexity Low_complexity 1 21 0 273 280 110 34 chrX 13534974 13535092 -163439048 + L2 LINE L2 3146 3272 0 210 293 136 36 chrX 13536221 13536361 -163437779 + L2 LINE L2 1795 1948 -1366 * 268 336 126 7 chrX 13536359 13536502 -163437638 - L2 LINE L2 -1076 2238 2079 326 355 95 35 chrX 13536517 13537064 -163437076 + L2 LINE L2 2152 2731 -583 187 288 137 65 chrX 13537453 13537592 -163436548 + L2 LINE L2 3161 3309 -4 788 33 0 0 chrX 13538345 13538436 -163435704 + L1MA1 LINE L1 6212 6302 0 28 0 0 0 chrX 13538436 13538464 -163435676 + AT_rich Low_complexity Low_complexity 1 28 0 1914 196 66 92 chrX 13538761 13539293 -163434847 + MLT2B1 LTR ERVL 3 520 0 395 250 0 62 chrX 13540135 13540263 -163433877 - LTR33A LTR ERVL 0 523 404 243 296 99 47 chrX 13541132 13541304 -163432836 + L2 LINE L2 1795 1975 -1339 * 302 260 60 0 chrX 13541269 13541369 -163432771 - L2 LINE L2 -1076 2238 2133 1032 214 48 14 chrX 13542375 13542585 -163431555 - MER20 DNA MER1_type -2 217 1 656 247 52 80 chrX 13543312 13543700 -163430440 - Charlie4 DNA MER1_type -147 1814 1438 1086 207 52 41 chrX 13543745 13543858 -163430282 - Charlie4 DNA MER1_type -1664 297 187 1767 170 0 23 chrX 13543858 13544164 -163429976 + AluJo SINE Alu 1 299 -13 1086 207 52 41 chrX 13544164 13544340 -163429800 - Charlie4 DNA MER1_type -1774 187 5 316 263 153 29 chrX 13544443 13544580 -163429560 + L2 LINE L2 2812 2965 -349 25 0 0 0 chrX 13545017 13545042 -163429098 + AT_rich Low_complexity Low_complexity 1 25 0 2135 96 0 0 chrX 13545051 13545322 -163428818 + AluSg SINE Alu 25 295 -15 292 232 119 65 chrX 13545617 13545886 -163428254 + L2 LINE L2 3072 3313 0 194 268 155 31 chrX 13546608 13546705 -163427435 - MER5B DNA MER1_type -69 109 1 4544 129 15 122 chrX 13546813 13548358 -163425782 - pTR5 LTR ERV1 0 2606 1524 643 118 0 0 chrX 13548506 13548591 -163425549 - AluJ/FLAM SINE Alu -226 86 2 1702 97 4 0 chrX 13548896 13549122 -163425018 + AluSg/x SINE Alu 72 298 -12 864 262 9 14 chrX 13549286 13549496 -163424644 - MER63A DNA MER1_type 0 210 2 23 0 0 0 chrX 13550356 13550379 -163423761 + AT_rich Low_complexity Low_complexity 1 23 0 2439 37 0 0 chrX 13550655 13550927 -163423213 + AluY SINE Alu 21 292 -19 1253 160 24 0 chrX 13551039 13551245 -163422895 - MER2 DNA MER2_type -134 211 1 319 284 45 97 chrX 13552210 13552251 -163421889 + L2 LINE L2 454 496 -2818 1077 243 14 0 chrX 13552251 13552469 -163421671 - MER58A DNA MER1_type -3 221 1 319 284 45 97 chrX 13552469 13552582 -163421558 + L2 LINE L2 496 600 -2714 850 56 0 0 chrX 13552588 13552695 -163421445 + AluSg/x SINE Alu 204 310 0 2923 91 5 2 chrX 13552718 13553114 -163421026 - L1MA3 LINE L1 -447 5858 5462 1153 277 173 38 chrX 13553138 13553763 -163420377 + L2 LINE L2 666 1374 -1940 813 246 6 0 chrX 13555899 13556074 -163418066 + MIR SINE MIR 79 254 -8 2283 95 0 0 chrX 13556152 13556448 -163417692 + AluSx SINE Alu 1 296 -16 2505 174 80 67 chrX 13556523 13557137 -163417003 + MLT1E3 LTR MaLR 3 624 0 288 253 187 11 chrX 13557622 13557713 -163416427 + MIR SINE MIR 46 152 -110 280 361 25 16 chrX 13558735 13558857 -163415283 + L2 LINE L2 3190 3312 -1 861 177 45 61 chrX 13559517 13559688 -163414452 + MER3 DNA MER1_type 11 180 -29 1151 175 32 23 chrX 13559688 13559905 -163414235 - MER20 DNA MER1_type 0 219 1 861 177 45 61 chrX 13559905 13559931 -163414209 + MER3 DNA MER1_type 180 205 -4 1098 160 91 0 chrX 13561314 13561501 -163412639 + MER20 DNA MER1_type 16 219 0 408 271 11 72 chrX 13561635 13561816 -163412324 - MER5B DNA MER1_type -2 176 7 2356 83 0 7 chrX 13562536 13562837 -163411303 - AluY SINE Alu -12 299 1 521 241 9 0 chrX 13563541 13563653 -163410487 + ORSL DNA AcHobo 6 118 -157 249 297 20 20 chrX 13566234 13566268 -163407872 - MIR SINE MIR -87 175 142 246 32 0 0 chrX 13566268 13566299 -163407841 + (TCC)n Simple_repeat Simple_repeat 3 33 0 249 297 20 20 chrX 13566299 13566365 -163407775 - MIR SINE MIR -119 143 75 2262 54 11 4 chrX 13566769 13567079 -163407061 - AluY SINE Alu 0 312 1 304 205 115 0 chrX 13567951 13568029 -163406111 - L2 LINE L2 -8 3305 3219 826 175 51 28 chrX 13568046 13568223 -163405917 - MER5A DNA MER1_type -8 181 1 297 303 134 7 chrX 13568509 13568651 -163405489 + MIR SINE MIR 49 208 -54 1501 179 54 56 chrX 13568875 13569012 -163405128 - LTR37B LTR ERV1 -2 466 330 2349 88 3 3 chrX 13569012 13569318 -163404822 + AluSx SINE Alu 1 306 -6 1501 179 54 56 chrX 13569318 13569371 -163404769 - LTR37B LTR ERV1 -138 330 278 2199 104 0 31 chrX 13569371 13569688 -163404452 + AluSx SINE Alu 2 308 -4 1501 179 54 56 chrX 13569688 13569887 -163404253 - LTR37B LTR ERV1 -190 278 77 606 277 95 0 chrX 13569931 13570079 -163404061 - MER96 DNA MER1_type? 0 175 14 330 176 59 15 chrX 13570389 13570457 -163403683 + MLT1H LTR MaLR 229 299 -250 1375 227 97 19 chrX 13571043 13571472 -163402668 + L1ME4a LINE L1 5511 5975 -195 1459 188 72 4 chrX 13572092 13572368 -163401772 + MER58B DNA MER1_type 3 297 -44 1034 67 0 0 chrX 13572368 13572502 -163401638 - AluY SINE Alu -3 308 175 344 113 0 19 chrX 13572502 13572555 -163401585 + MER58B DNA MER1_type 289 340 -1 2509 48 6 6 chrX 13572555 13572866 -163401274 + AluY SINE Alu 1 311 0 2082 106 21 0 chrX 13573188 13573505 -163400635 + AluSq SINE Alu 1 323 0 274 227 97 16 chrX 13573848 13573971 -163400169 + MLT1J LTR MaLR 68 239 -263 346 238 9 38 chrX 13574066 13574171 -163399969 + MLT1H LTR MaLR 425 526 -23 1324 175 31 18 chrX 13574607 13574893 -163399247 + Charlie4a DNA MER1_type 76 365 -143 2325 109 65 0 chrX 13575728 13576067 -163398073 + MER46B DNA MER2_type 1 236 0 2253 98 3 0 chrX 13576179 13576475 -163397665 + AluSx SINE Alu 3 299 -13 3837 142 38 16 chrX 13577837 13578472 -163395668 - L1MB8 LINE L1 -9 6169 5521 2159 128 0 0 chrX 13578701 13578989 -163395151 - AluSx SINE Alu -24 288 1 362 49 85 0 chrX 13579586 13579668 -163394472 + CT-rich Low_complexity Low_complexity 1 89 0 240 159 214 79 chrX 13579925 13580031 -163394109 + L1ME4a LINE L1 5978 6105 -16 1790 205 86 38 chrX 13580031 13580474 -163393666 - MLT1C LTR MaLR -3 464 1 240 159 214 79 chrX 13580474 13580493 -163393647 + L1ME4a LINE L1 6105 6120 -1 195 282 56 0 chrX 13580896 13580967 -163393173 - L2 LINE L2 -212 3060 2986 760 207 25 71 chrX 13581575 13581699 -163392441 + MER5A DNA MER1_type 1 114 -75 2262 97 0 17 chrX 13581699 13581861 -163392279 - AluSx SINE Alu -18 294 138 2390 87 3 0 chrX 13581861 13582160 -163391980 - AluSp SINE Alu -13 300 1 2262 97 0 17 chrX 13582160 13582296 -163391844 - AluSx SINE Alu -174 138 1 760 207 25 71 chrX 13582296 13582369 -163391771 + MER5A DNA MER1_type 114 189 0 2652 40 0 0 chrX 13582724 13583021 -163391119 + AluY SINE Alu 13 309 -2 1605 82 59 102 chrX 13583171 13583474 -163390666 + AluSx SINE Alu 1 290 -22 195 69 0 0 chrX 13583474 13583503 -163390637 + (TA)n Simple_repeat Simple_repeat 1 29 0 2391 91 0 3 chrX 13583519 13583827 -163390313 + AluSg SINE Alu 1 307 -3 2376 58 10 3 chrX 13584106 13584401 -163389739 + AluSx SINE Alu 1 297 -15 270 0 0 0 chrX 13585792 13585822 -163388318 + (CA)n Simple_repeat Simple_repeat 2 31 0 2324 75 3 7 chrX 13586472 13586766 -163387374 + AluSg SINE Alu 1 293 -17 464 268 88 76 chrX 13587111 13587134 -163387006 - L1MC4a LINE L1 -233 5929 5908 2008 149 0 0 chrX 13587134 13587429 -163386711 - AluSx SINE Alu -17 295 1 464 268 88 76 chrX 13587429 13587723 -163386417 - L1MC4a LINE L1 -254 5908 5605 1256 180 31 0 chrX 13587723 13587951 -163386189 + L1MD2 LINE L1 6107 6341 -18 464 268 88 76 chrX 13587951 13587975 -163386165 - L1MC4a LINE L1 -557 5605 5583 464 132 132 38 chrX 13588799 13588905 -163385235 - LTR38 LTR ERV1 0 556 441 1669 161 359 18 chrX 13588905 13589407 -163384733 + pTR5 LTR ERV1 1360 2032 -406 341 233 11 0 chrX 13589409 13589499 -163384641 + LTR30 LTR ERV1 553 643 -79 749 110 0 0 chrX 13589501 13589601 -163384539 + LTR12 LTR ERV1 615 714 0 2756 141 24 22 chrX 13589602 13590062 -163384078 - LTR38 LTR ERV1 -95 461 1 804 283 45 29 chrX 13590290 13590662 -163383478 + L1MC4 LINE L1 7490 7840 -202 392 220 182 8 chrX 13590933 13591065 -163383075 + MER96B DNA MER1_type? 263 417 0 249 180 0 0 chrX 13591175 13591225 -163382915 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 241 345 0 0 chrX 13591231 13591318 -163382822 - L1MC4 LINE L1 -1342 6700 6614 * 406 241 44 22 chrX 13591292 13591429 -163382711 + L1MC4 LINE L1 7902 8041 -1 2581 52 0 3 chrX 13592012 13592320 -163381820 - AluY SINE Alu -4 307 1 34 42 0 0 chrX 13592500 13592548 -163381592 + AT_rich Low_complexity Low_complexity 1 48 0 336 274 68 14 chrX 13592556 13592702 -163381438 + L1ME LINE L1 5633 5786 -335 557 277 161 8 chrX 13592921 13593170 -163380970 + L2 LINE L2 3027 3313 0 3953 161 25 5 chrX 13593345 13593952 -163380188 + LTR31 LTR ERV1 1 619 0 189 0 0 0 chrX 13594339 13594360 -163379780 + (A)n Simple_repeat Simple_repeat 1 21 0 23 33 0 0 chrX 13595302 13595332 -163378808 + AT_rich Low_complexity Low_complexity 1 30 0 732 182 29 6 chrX 13595448 13595618 -163378522 - MER33 DNA MER1_type -1 362 189 4143 149 30 1 chrX 13595621 13596285 -163377855 - L1MA5 LINE L1 -1 6299 5617 2198 102 12 6 chrX 13596285 13596608 -163377532 + L1MA5 LINE L1 5287 5611 -689 23 68 0 0 chrX 13596617 13596661 -163377479 + AT_rich Low_complexity Low_complexity 1 44 0 1889 116 0 4 chrX 13596664 13596923 -163377217 + AluSq SINE Alu 49 306 -7 766 188 14 0 chrX 13596930 13597068 -163377072 - MER33 DNA MER1_type -182 142 3 501 191 0 21 chrX 13597068 13597162 -163376978 + AluSp/q SINE Alu 211 302 -11 689 221 21 0 chrX 13597169 13597309 -163376831 - MER33 DNA MER1_type -181 143 1 929 151 8 155 chrX 13597318 13597389 -163376751 - MER20 DNA MER1_type -1 218 138 2355 103 0 0 chrX 13597389 13597699 -163376441 - AluSg SINE Alu 0 310 1 929 151 8 155 chrX 13597699 13597879 -163376261 - MER20 DNA MER1_type -81 138 4 284 272 25 0 chrX 13598034 13598115 -163376025 + GA-rich Low_complexity Low_complexity 3 85 0 209 132 0 19 chrX 13598494 13598547 -163375593 + (TA)n Simple_repeat Simple_repeat 1 52 0 372 133 0 0 chrX 13598670 13598730 -163375410 + (TA)n Simple_repeat Simple_repeat 1 60 0 2638 48 0 0 chrX 13599674 13599985 -163374155 + AluY SINE Alu 1 311 0 2216 113 7 0 chrX 13600840 13601142 -163372998 - AluSg1 SINE Alu -5 304 1 2360 60 0 3 chrX 13601425 13601743 -163372397 + AluSq SINE Alu 1 317 0 689 216 144 12 chrX 13601749 13601916 -163372224 + MER5A DNA MER1_type 1 189 0 2552 70 0 0 chrX 13602088 13602389 -163371751 + AluSc SINE Alu 1 301 -8 278 273 130 93 chrX 13602391 13602607 -163371533 + MIR SINE MIR 24 247 -15 2341 92 0 0 chrX 13603035 13603328 -163370812 - AluSg SINE Alu -17 293 1 2281 105 0 3 chrX 13604305 13604601 -163369539 + AluSq SINE Alu 1 295 -18 436 303 81 29 chrX 13604700 13605056 -163369084 + MLT1K LTR MaLR 1 422 -166 2223 95 0 0 chrX 13605445 13605759 -163368381 + AluSx SINE Alu 1 314 0 25 83 0 0 chrX 13607083 13607143 -163366997 + AT_rich Low_complexity Low_complexity 1 60 0 2049 112 0 20 chrX 13607150 13607445 -163366695 + AluSx SINE Alu 24 312 0 2176 116 7 0 chrX 13607458 13607761 -163366379 + AluSx SINE Alu 1 305 -7 902 249 65 26 chrX 13659108 13659449 -163314691 + MLT1C LTR MaLR 110 463 -4 2029 134 0 0 chrX 13660561 13660859 -163313281 - AluSx SINE Alu -14 298 1 792 206 0 29 chrX 13660880 13661050 -163313090 + MER58A DNA MER1_type 1 165 0 230 301 78 34 chrX 13661084 13661380 -163312760 - L1MEd LINE L1 -4914 1205 897 2227 70 0 14 chrX 13661422 13661736 -163312404 - AluY SINE Alu 0 310 1 186 368 0 0 chrX 13662813 13662870 -163311270 + L3 LINE CR1 1518 1574 -3 1794 169 16 22 chrX 13663100 13663381 -163310759 + AluJb SINE Alu 1 281 -31 1162 61 11 17 chrX 13663381 13663561 -163310579 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1794 169 16 22 chrX 13663561 13663593 -163310547 + AluJb SINE Alu 281 312 0 854 239 30 9 chrX 13664865 13665095 -163309045 + L1MB8 LINE L1 5433 5667 -499 288 174 58 9 chrX 13665074 13665171 -163308969 + L1MB8 LINE L1 5949 6010 -168 * 471 267 181 95 chrX 13665394 13665720 -163308420 + L2 LINE L2 2919 3272 0 227 341 49 12 chrX 13665881 13665963 -163308177 + L2 LINE L2 3101 3185 -87 258 211 367 11 chrX 13666106 13666196 -163307944 - MER5A DNA MER1_type -7 182 61 186 133 0 0 chrX 13666196 13666226 -163307914 + (T)n Simple_repeat Simple_repeat 1 30 0 324 211 0 0 chrX 13666523 13666580 -163307560 - MER5A DNA MER1_type -126 63 7 461 245 0 72 chrX 13667888 13668027 -163306113 - MER5B DNA MER1_type -11 167 39 280 224 0 0 chrX 13668027 13668085 -163306055 + L1MD3 LINE L1 7883 7940 -55 1967 185 94 53 chrX 13669557 13670120 -163304020 + L1MD2 LINE L1 5553 6138 -221 189 107 0 0 chrX 13670189 13670217 -163303923 + (T)n Simple_repeat Simple_repeat 1 28 0 364 343 66 6 chrX 13670217 13670383 -163303757 + MIR SINE MIR 78 253 -9 204 231 0 0 chrX 13670385 13670437 -163303703 + CT-rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chrX 13670553 13670581 -163303559 + AT_rich Low_complexity Low_complexity 1 28 0 273 151 0 0 chrX 13671115 13671168 -163302972 + (TG)n Simple_repeat Simple_repeat 1 53 0 292 171 38 124 chrX 13671803 13671908 -163302232 + MLT1H LTR MaLR 454 549 0 256 174 0 22 chrX 13672612 13672658 -163301482 + L2 LINE L2 3265 3309 -4 1107 272 73 8 chrX 13673021 13673392 -163300748 + MLT1I LTR MaLR 7 401 -8 479 294 23 55 chrX 13673880 13674098 -163300042 - L2 LINE L2 -2 3311 3101 725 213 101 19 chrX 13674118 13674325 -163299815 + MER58 DNA MER1_type 11 234 -107 501 282 155 82 chrX 13674325 13674776 -163299364 + L2 LINE L2 2830 3313 0 391 280 42 8 chrX 13676200 13676318 -163297822 - MER91C DNA MER1_type -15 125 4 27 73 0 0 chrX 13676915 13676970 -163297170 + AT_rich Low_complexity Low_complexity 1 55 0 2133 107 0 0 chrX 13677457 13677765 -163296375 + AluY SINE Alu 1 308 0 387 151 14 14 chrX 13678379 13678452 -163295688 - MER106B DNA MER1_type -986 73 1 1139 226 5 0 chrX 13681077 13681298 -163292842 - MER58A DNA MER1_type -1 223 2 291 260 0 106 chrX 13681811 13681934 -163292206 - L2 LINE L2 0 3313 3204 207 356 113 32 chrX 13682100 13682471 -163291669 - L2 LINE L2 -385 2929 2529 2499 66 0 25 chrX 13682495 13682815 -163291325 - AluSx SINE Alu 0 312 1 225 378 0 0 chrX 13682865 13682947 -163291193 - L2 LINE L2 -999 2315 2234 775 200 144 0 chrX 13683229 13683389 -163290751 - MER5A DNA MER1_type -3 186 4 267 239 0 42 chrX 13683668 13683739 -163290401 + MIR SINE MIR 16 83 -125 681 264 109 5 chrX 13683795 13683996 -163290144 + MIR SINE MIR 20 241 -21 308 277 48 0 chrX 13684029 13684112 -163290028 + MIR3 SINE MIR 113 199 -9 469 314 30 17 chrX 13686246 13686609 -163287531 + L1ME4a LINE L1 5461 5865 -256 363 244 67 37 chrX 13686660 13686795 -163287345 + L1ME4a LINE L1 5982 6120 -1 482 277 71 7 chrX 13687122 13687277 -163286863 + MLT2E LTR ERVL 158 322 -306 287 263 12 0 chrX 13687332 13687412 -163286728 + MLT2E LTR ERVL 460 540 -88 227 216 135 27 chrX 13687423 13687571 -163286569 + MLT1H LTR MaLR 228 391 -204 326 146 64 0 chrX 13687605 13687676 -163286464 + MLT1H LTR MaLR 477 552 -3 2424 145 8 0 chrX 13688868 13689240 -163284900 + MER1A DNA MER1_type 1 375 -154 1819 86 4 4 chrX 13689240 13689497 -163284643 + Charlie3 DNA MER1_type 2450 2706 -4 767 193 171 0 chrX 13690763 13690944 -163283196 - MER58A DNA MER1_type -10 214 3 478 300 33 7 chrX 13690971 13691121 -163283019 - MIR SINE MIR -58 204 51 260 174 159 0 chrX 13691572 13691641 -163282499 - MER116 DNA Mariner 0 80 1 2465 57 3 0 chrX 13692159 13692458 -163281682 - AluY SINE Alu -11 300 1 211 189 19 19 chrX 13693294 13693347 -163280793 - L2 LINE L2 0 3313 3261 1219 46 13 0 chrX 13693517 13693670 -163280470 + L1PA5 LINE L1 5994 6148 -6 193 300 33 11 chrX 13693863 13693953 -163280187 - L2 LINE L2 -276 3037 2946 369 0 0 0 chrX 13694088 13694129 -163280011 + (TG)n Simple_repeat Simple_repeat 1 41 0 1488 185 150 14 chrX 13694905 13695338 -163278802 + Charlie4a DNA MER1_type 17 508 0 746 226 92 26 chrX 13695348 13695543 -163278597 + MER63A DNA MER1_type 2 209 -1 2023 98 33 0 chrX 13696148 13696455 -163277685 - AluY SINE Alu 0 316 1 1858 176 10 22 chrX 13696462 13696775 -163277365 - AluJo SINE Alu -3 309 1 934 150 69 0 chrX 13697482 13697642 -163276498 + AluJo SINE Alu 33 203 -109 2670 78 17 35 chrX 13697799 13698221 -163275919 - L1MA1 LINE L1 0 6302 5889 2125 162 6 16 chrX 13749147 13749511 -163224629 + MLT1A1 LTR MaLR 6 365 0 3665 160 35 40 chrX 13749522 13750042 -163224098 - MLT-int LTR MaLR -1013 722 206 2064 148 3 0 chrX 13750042 13750353 -163223787 + AluJb SINE Alu 1 312 0 3665 160 35 40 chrX 13750353 13750555 -163223585 - MLT-int LTR MaLR -1529 206 4 197 255 20 0 chrX 13751413 13751464 -163222676 - MIR SINE MIR -116 146 95 211 111 22 22 chrX 13751480 13751525 -163222615 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 1589 306 33 17 chrX 13751697 13752465 -163221675 + L1M4 LINE L1 3437 4216 -1930 229 307 185 16 chrX 13752583 13752772 -163221368 + MLT1I LTR MaLR 80 300 -109 591 254 97 53 chrX 13752874 13753330 -163220810 + L1M4 LINE L1 4213 4688 -1458 312 315 236 41 chrX 13753464 13754071 -163220069 + L2 LINE L2 2323 3060 -212 1158 133 9 57 chrX 13754302 13754512 -163219628 - THE1B LTR MaLR 0 364 165 352 0 0 0 chrX 13755274 13755313 -163218827 + (TTG)n Simple_repeat Simple_repeat 1 180 0 1823 138 22 11 chrX 13755313 13755592 -163218548 - AluJb SINE Alu -30 282 4 400 213 0 0 chrX 13755707 13755782 -163218358 + FLAM SINE Alu 43 117 -16 244 304 115 58 chrX 13755972 13756163 -163217977 + L2 LINE L2 2748 2949 -365 1838 124 73 88 chrX 13756192 13756588 -163217552 - MLT1B LTR MaLR 0 390 1 294 29 0 0 chrX 13756892 13756927 -163217213 + (TG)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chrX 13757385 13757409 -163216731 + (TA)n Simple_repeat Simple_repeat 1 24 0 29 28 0 0 chrX 13758248 13758284 -163215856 + AT_rich Low_complexity Low_complexity 1 36 0 2017 114 27 30 chrX 13758820 13759118 -163215022 + AluJb SINE Alu 1 297 -15 294 85 0 0 chrX 13759141 13759188 -163214952 - MADE1 DNA Mariner -3 77 31 203 250 191 12 chrX 13759791 13759875 -163214265 - L3 LINE CR1 -80 1497 1399 182 229 0 0 chrX 13761274 13761309 -163212831 - L2 LINE L2 -17 3255 3221 207 244 0 0 chrX 13762578 13762656 -163211484 + GA-rich Low_complexity Low_complexity 3 80 0 203 182 0 23 chrX 13762758 13762802 -163211338 + A-rich Low_complexity Low_complexity 4 46 0 2127 113 7 0 chrX 13763018 13763318 -163210822 - AluSx SINE Alu -9 303 2 183 42 0 0 chrX 13763494 13763518 -163210622 + (CAA)n Simple_repeat Simple_repeat 1 24 0 186 321 170 0 chrX 13764809 13764915 -163209225 + L2 LINE L2 3148 3271 -1 478 205 253 6 chrX 13765871 13765918 -163208222 - L1MD3 LINE L1 -34 7961 7927 966 142 69 64 chrX 13765918 13766136 -163208004 + MER20 DNA MER1_type 1 219 0 478 205 253 6 chrX 13766136 13766254 -163207886 - L1MD3 LINE L1 -68 7927 7755 372 137 14 0 chrX 13766256 13766329 -163207811 - L1MC4a LINE L1 -260 7548 7475 183 409 9 36 chrX 13766565 13766675 -163207465 - MIR3 SINE MIR -90 118 12 369 212 103 20 chrX 13766919 13767065 -163207075 + L2 LINE L2 3091 3248 -65 2308 91 3 0 chrX 13767292 13767589 -163206551 - AluSg SINE Alu -12 298 1 22 35 0 0 chrX 13767592 13767621 -163206519 + AT_rich Low_complexity Low_complexity 1 29 0 772 227 89 10 chrX 13767630 13767833 -163206307 + MER20 DNA MER1_type 1 219 0 328 201 68 20 chrX 13767837 13767984 -163206156 - L1M2 LINE L1 -368 5786 5681 229 296 72 26 chrX 13768046 13768198 -163205942 - L1ME LINE L1 -596 5570 5412 507 200 67 67 chrX 13768388 13768553 -163205587 + MER20 DNA MER1_type 1 165 -54 204 125 0 0 chrX 13768557 13768589 -163205551 + (CCCCCT)n Simple_repeat Simple_repeat 3 34 0 351 274 98 115 chrX 13768817 13769756 -163204384 - L1M2 LINE L1 -5389 1460 315 499 192 0 144 chrX 13771368 13771514 -163202626 + MER20 DNA MER1_type 1 125 -94 930 237 70 14 chrX 13771558 13771916 -163202224 - LTR37A LTR ERV1 -4 422 45 1871 149 10 32 chrX 13773000 13773309 -163200831 - AluJo SINE Alu -10 302 1 487 276 30 8 chrX 13773330 13773464 -163200676 - MIR SINE MIR -106 156 20 574 224 0 0 chrX 13774276 13774401 -163199739 + MER33 DNA MER1_type 6 130 -194 825 142 149 0 chrX 13774411 13774442 -163199698 + AluJo SINE Alu 85 110 -202 369 0 0 0 chrX 13774442 13774483 -163199657 + (CA)n Simple_repeat Simple_repeat 2 42 0 825 142 149 0 chrX 13774483 13774585 -163199555 + AluJo SINE Alu 110 238 -74 189 0 0 0 chrX 13774598 13774619 -163199521 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 541 189 98 0 chrX 13774631 13774784 -163199356 + MER33 DNA MER1_type 196 363 0 477 310 60 74 chrX 13775099 13775383 -163198757 + L2 LINE L2 2992 3271 -1 2203 179 22 43 chrX 13775573 13776064 -163198076 - MER66B LTR ERV1 -5 481 1 503 259 108 38 chrX 13777090 13777248 -163196892 + MER5A DNA MER1_type 16 184 -5 267 281 0 0 chrX 13778074 13778131 -163196009 + MIR SINE MIR 1 57 -205 399 205 36 0 chrX 13778332 13778415 -163195725 + MIR SINE MIR 177 262 0 533 320 117 5 chrX 13779166 13779372 -163194768 + MIR SINE MIR 34 262 0 472 154 45 0 chrX 13779536 13779646 -163194494 - L1MA9 LINE L1 -10 6302 6188 4074 117 69 2 chrX 13779659 13780713 -163193427 - L1MA8 LINE L1 -377 5914 4766 250 125 167 0 chrX 13780784 13780832 -163193308 + MER63 DNA MER1_type 27 708 -128 228 83 83 0 chrX 13780853 13780889 -163193251 + MER63 DNA MER1_type 669 707 -354 272 229 29 0 chrX 13780952 13781022 -163193118 + MER63 DNA MER1_type 990 1061 -1 2487 17 0 7 chrX 13781140 13781463 -163192677 - L1PA2 LINE L1 0 6155 5866 416 88 44 0 chrX 13781610 13781678 -163192462 + (ATGGTG)n Simple_repeat Simple_repeat 4 74 0 284 295 32 21 chrX 13781696 13781791 -163192349 + MIR3 SINE MIR 9 104 -104 192 373 20 29 chrX 13782173 13782275 -163191865 - L2 LINE L2 -20 3293 3193 226 322 61 19 chrX 13782626 13782760 -163191380 + MIR3 SINE MIR 8 149 -67 262 105 0 0 chrX 13782765 13782803 -163191337 + tRNA-Ser-TCA tRNA tRNA 1 38 -47 199 382 59 0 chrX 13782803 13782905 -163191235 + MIR SINE MIR 139 246 -16 374 286 71 18 chrX 13782935 13783047 -163191093 - MIR SINE MIR -143 119 2 2337 77 27 3 chrX 13783213 13783510 -163190630 - AluY SINE Alu -7 304 1 2239 85 0 0 chrX 13783520 13783823 -163190317 - AluSx SINE Alu 0 304 2 492 18 0 0 chrX 13785703 13785760 -163188380 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 266 153 17 0 chrX 13785859 13785918 -163188222 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 357 293 43 0 chrX 13785952 13786092 -163188048 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 777 244 131 47 chrX 13786113 13786540 -163187600 - L1MC4 LINE L1 -486 7556 7094 327 22 0 0 chrX 13786570 13786615 -163187525 + L1MA9 LINE L1 6262 6306 -6 332 0 0 0 chrX 13786690 13786731 -163187409 - L1PA6 LINE L1 -4 6150 6110 210 226 38 0 chrX 13787671 13787724 -163186416 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 2055 219 72 53 chrX 13789208 13789490 -163184650 + MLT1E LTR MaLR 1 276 -317 1149 111 162 0 chrX 13789490 13789688 -163184452 + MER30 DNA MER1_type 1 230 0 2055 219 72 53 chrX 13789688 13789985 -163184155 + MLT1E LTR MaLR 276 591 -2 622 287 71 19 chrX 13789986 13790254 -163183886 - LTR16A LTR ERVL -110 340 59 474 159 80 35 chrX 13790688 13790801 -163183339 - ORSL DNA AcHobo -157 118 1 3425 24 2 7 chrX 13791043 13791454 -163182686 - L1PA4 LINE L1 0 6155 5747 204 233 0 0 chrX 13791498 13791541 -163182599 - L2 LINE L2 -79 3193 3151 633 180 108 41 chrX 13791945 13792010 -163182130 + MER106A DNA MER1_type 30 89 -147 2601 141 21 2 chrX 13792010 13792430 -163181710 - MSTA LTR MaLR 0 428 1 633 180 108 41 chrX 13792430 13792558 -163181582 + MER106A DNA MER1_type 89 236 0 23 86 0 0 chrX 13793544 13793602 -163180538 + AT_rich Low_complexity Low_complexity 1 58 0 229 193 35 0 chrX 13794362 13794419 -163179721 + MER116 DNA Mariner 3 61 -19 238 347 44 48 chrX 13794853 13795101 -163179039 + L2 LINE L2 1824 2070 -1244 571 198 141 93 chrX 13795407 13795655 -163178485 + MER46C DNA MER2_type 5 264 -74 194 365 0 0 chrX 13795662 13795714 -163178426 + MIR SINE MIR 49 100 -108 228 318 35 0 chrX 13797460 13797545 -163176595 - MIR SINE MIR -95 167 80 2077 140 68 51 chrX 13797664 13798079 -163176061 + MSTB LTR MaLR 1 422 -4 2340 105 0 6 chrX 13798430 13798745 -163175395 - AluSq SINE Alu 0 313 1 454 270 74 7 chrX 13798878 13799026 -163175114 + L2 LINE L2 2700 2857 -457 427 382 77 0 chrX 13799345 13799591 -163174549 - L3b LINE CR1 -52 1531 1267 202 264 305 11 chrX 13799727 13799901 -163174239 + MIR SINE MIR 34 258 -4 2532 93 0 0 chrX 13799972 13800284 -163173856 - AluSx SINE Alu 0 312 1 933 177 141 0 chrX 13800501 13800693 -163173447 - MER20 DNA MER1_type 0 219 1 921 246 85 0 chrX 13801043 13801267 -163172873 + MIR SINE MIR 20 262 0 24 0 0 0 chrX 13803622 13803646 -163170494 + AT_rich Low_complexity Low_complexity 1 24 0 2209 104 0 0 chrX 13803949 13804238 -163169902 - AluSx SINE Alu -21 291 3 763 156 19 99 chrX 13804603 13804814 -163169326 - L2 LINE L2 -8 3305 3112 7074 55 10 25 chrX 13805700 13806731 -163167409 - L1PA8 LINE L1 0 6172 5150 2435 84 0 10 chrX 13806731 13807040 -163167100 + AluSq SINE Alu 1 306 -7 7074 55 10 25 chrX 13807040 13807376 -163166764 - L1PA8 LINE L1 -1022 5150 4811 2211 260 60 20 chrX 13807533 13808003 -163166137 + L2 LINE L2 2205 2704 -610 2095 135 0 6 chrX 13808003 13808314 -163165826 - AluJb SINE Alu -3 309 1 2211 260 60 20 chrX 13808314 13808427 -163165713 + L2 LINE L2 2704 2811 -503 4442 84 0 5 chrX 13808659 13809253 -163164887 - LTR10C LTR ERV1 0 591 1 246 363 113 12 chrX 13810693 13810861 -163163279 - L3 LINE CR1 -10 1567 1383 421 257 125 35 chrX 13810869 13811013 -163163127 - MIR SINE MIR -41 221 65 365 284 205 5 chrX 13811026 13811216 -163162924 - L3 LINE CR1 -287 1290 1063 1084 253 177 25 chrX 13811342 13811957 -163162183 + L2 LINE L2 2602 3304 -9 181 344 100 69 chrX 13812054 13812247 -163161893 - L3 LINE CR1 -1105 472 262 2480 51 0 3 chrX 13812247 13812542 -163161598 + AluY SINE Alu 1 294 -17 181 344 100 69 chrX 13812542 13812697 -163161443 - L3 LINE CR1 -1315 262 113 543 313 78 5 chrX 13813546 13813738 -163160402 + MIR SINE MIR 15 220 -42 205 328 0 0 chrX 13814008 13814066 -163160074 + L3 LINE CR1 1519 1576 -1 2490 73 0 0 chrX 13814335 13814638 -163159502 + AluY SINE Alu 1 303 -8 212 0 0 35 chrX 13815927 13815956 -163158184 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 686 146 36 0 chrX 13816408 13816518 -163157622 - AluJ SINE Alu -16 296 183 846 156 0 0 chrX 13816525 13816653 -163157487 - AluJ SINE Alu -174 128 1 23 33 0 0 chrX 13816998 13817028 -163157112 + AT_rich Low_complexity Low_complexity 1 30 0 706 264 52 0 chrX 13818499 13818673 -163155467 + MIR SINE MIR 5 187 -75 2019 152 3 3 chrX 13818725 13819027 -163155113 - AluJb SINE Alu -10 302 1 255 272 74 0 chrX 13819103 13819184 -163154956 + L2 LINE L2 2716 2802 -512 1139 204 52 23 chrX 13819217 13819717 -163154423 - MLT1E LTR MaLR 0 593 1 227 283 43 33 chrX 13819759 13819851 -163154289 + MIR SINE MIR 104 196 -66 33 43 0 0 chrX 13820119 13820166 -163153974 + AT_rich Low_complexity Low_complexity 1 47 0 680 259 0 12 chrX 13820166 13820332 -163153808 - MIR SINE MIR -3 259 96 183 42 0 0 chrX 13820918 13820942 -163153198 + (GA)n Simple_repeat Simple_repeat 2 25 0 352 302 48 0 chrX 13821416 13821542 -163152598 + MER94 DNA DNA 1 132 -2 982 158 82 0 chrX 13821603 13821786 -163152354 + MER20 DNA MER1_type 1 198 -21 937 212 18 40 chrX 13821783 13822005 -163152135 - MER58A DNA MER1_type -7 217 1 * 393 315 151 25 chrX 13822063 13822301 -163151839 - L3 LINE CR1 -857 720 453 402 241 0 46 chrX 13822320 13822407 -163151733 - MER5B DNA MER1_type -95 83 1 192 291 161 31 chrX 13822407 13822620 -163151520 - L2 LINE L2 -385 2929 2688 422 169 11 0 chrX 13822706 13822795 -163151345 + CT-rich Low_complexity Low_complexity 3 92 0 471 188 86 26 chrX 13822863 13822980 -163151160 - MER5C DNA MER1_type -200 124 1 230 383 87 15 chrX 13823008 13823331 -163150809 + L2 LINE L2 2765 3109 -163 24 0 0 0 chrX 13825238 13825262 -163148878 + AT_rich Low_complexity Low_complexity 1 24 0 315 312 65 0 chrX 13825509 13825602 -163148538 + MIR SINE MIR 21 119 -89 3343 192 12 12 chrX 13825608 13826347 -163147793 + L1MA9 LINE L1 5536 6274 -38 314 260 130 0 chrX 13826380 13826480 -163147660 + MIR SINE MIR 132 244 -18 201 254 134 0 chrX 13826889 13826956 -163147184 - MIR3 SINE MIR -3 205 130 1790 198 78 19 chrX 13827336 13827800 -163146340 + L1ME1 LINE L1 5299 5789 -395 530 249 75 6 chrX 13827805 13827978 -163146162 + L1ME1 LINE L1 5981 6165 -1 1036 287 78 112 chrX 13829055 13829839 -163144301 - L3 LINE CR1 -26 1551 795 2007 107 19 0 chrX 13829863 13830134 -163144006 - AluSx SINE Alu -18 294 19 4090 221 51 15 chrX 13831127 13832387 -163141753 + L1PA15-16 LINE L1 2731 4034 -2815 687 160 15 0 chrX 13832387 13832518 -163141622 + L1PA16 LINE L1 6025 6157 -9 2305 80 0 36 chrX 13832538 13832840 -163141300 + AluSg SINE Alu 1 291 -19 314 230 81 0 chrX 13833257 13833331 -163140809 - MIR SINE MIR -99 163 84 4105 87 10 3 chrX 13833343 13833942 -163140198 - L1MA2 LINE L1 -237 6067 5465 448 277 133 4 chrX 13833942 13834213 -163139927 - L1ME4a LINE L1 -281 5840 5535 2094 135 39 27 chrX 13834265 13834679 -163139461 - L1MA7 LINE L1 0 6291 5873 406 276 54 23 chrX 13835584 13835722 -163138418 + MIR SINE MIR 17 175 -66 1041 221 140 17 chrX 13835726 13836084 -163138056 - LTR16A1 LTR ERVL -1 456 55 1058 180 95 0 chrX 13836133 13836333 -163137807 - MER58A DNA MER1_type -3 221 3 1620 135 36 7 chrX 13836500 13836774 -163137366 + MER4C LTR ERV1 184 465 0 468 319 121 29 chrX 13836923 13837271 -163136869 + L2 LINE L2 1875 2254 -1060 221 358 75 8 chrX 13837567 13837701 -163136439 + L2 LINE L2 3171 3313 0 226 306 167 9 chrX 13838257 13838365 -163135775 - MIR3 SINE MIR -33 175 51 310 284 42 0 chrX 13838421 13838516 -163135624 - MIR SINE MIR -65 143 45 23 0 0 0 chrX 13839186 13839209 -163134931 + AT_rich Low_complexity Low_complexity 1 23 0 592 90 11 0 chrX 13839266 13839355 -163134785 + L1PA13 LINE L1 6061 6150 -13 391 283 97 0 chrX 13839513 13839626 -163134514 - L2 LINE L2 -1 3312 3189 267 342 108 0 chrX 13839857 13839968 -163134172 - L2 LINE L2 0 3272 3150 261 301 12 12 chrX 13841089 13841172 -163132968 + L2 LINE L2 3231 3313 0 206 227 0 15 chrX 13841178 13841244 -163132896 + GA-rich Low_complexity Low_complexity 4 68 0 425 296 36 106 chrX 13841647 13841948 -163132192 - L2 LINE L2 -1 3271 2992 34 0 0 0 chrX 13842158 13842192 -163131948 + AT_rich Low_complexity Low_complexity 1 34 0 2176 125 14 0 chrX 13842261 13842557 -163131583 + AluSx SINE Alu 1 300 -12 1768 127 100 21 chrX 13842887 13843226 -163130914 - MER47A DNA MER2_type 0 366 1 280 265 0 0 chrX 13844873 13844975 -163129165 - HAL1 LINE L1 -121 2386 2285 378 335 104 14 chrX 13844993 13845214 -163128926 - HAL1 LINE L1 -293 2214 1974 393 225 36 9 chrX 13845297 13845408 -163128732 - HAL1 LINE L1 -723 1784 1671 349 304 29 0 chrX 13845643 13845745 -163128395 - HAL1 LINE L1 -2402 105 1 562 252 161 0 chrX 13846240 13846395 -163127745 + MER5A DNA MER1_type 9 188 -1 936 141 11 54 chrX 13846404 13846589 -163127551 - MER5B DNA MER1_type 0 178 2 22 35 0 0 chrX 13847447 13847476 -163126664 + AT_rich Low_complexity Low_complexity 1 29 0 835 251 11 0 chrX 13847992 13848179 -163125961 + MER5A DNA MER1_type 1 189 0 1067 225 35 86 chrX 13848649 13849259 -163124881 - L2 LINE L2 -70 3243 2678 323 253 0 0 chrX 13849905 13849980 -163124160 - MIR SINE MIR 0 262 188 1289 269 42 3 chrX 13850065 13850422 -163123718 - LTR16C LTR ERVL -117 374 4 1294 99 0 0 chrX 13851605 13851767 -163122373 - AluSg/x SINE Alu -16 296 135 1887 148 11 0 chrX 13852541 13852847 -163121293 - AluJo SINE Alu 0 309 1 369 0 0 0 chrX 13853361 13853402 -163120738 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 0 0 0 chrX 13853425 13853457 -163120683 + (TA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chrX 13853595 13853619 -163120521 + AT_rich Low_complexity Low_complexity 1 24 0 908 294 44 17 chrX 13853642 13854053 -163120087 - L1MC4a LINE L1 -1932 5876 5455 208 271 21 0 chrX 13855020 13855068 -163119072 + MIR SINE MIR 206 254 -8 1480 145 98 50 chrX 13856160 13856202 -163117938 + MER58B DNA MER1_type 9 48 -2372 2070 99 3 7 chrX 13856202 13856524 -163117616 - AluSx SINE Alu 0 321 1 1480 145 98 50 chrX 13856524 13856798 -163117342 + MER58B DNA MER1_type 48 341 0 316 133 50 0 chrX 13858414 13858474 -163115666 - MER67C LTR ERV1 -228 482 420 1906 195 24 7 chrX 13858736 13859161 -163114979 + LTR56 LTR ERV1 1 432 -13 23 33 0 0 chrX 13859247 13859277 -163114863 + AT_rich Low_complexity Low_complexity 1 30 0 502 323 32 0 chrX 13859407 13859562 -163114578 + MER5A DNA MER1_type 25 184 -5 21 0 0 0 chrX 13860096 13860117 -163114023 + AT_rich Low_complexity Low_complexity 1 21 0 442 310 63 52 chrX 13860126 13860604 -163113536 + L1MC4a LINE L1 4018 4489 -1657 2106 156 0 0 chrX 13860604 13860911 -163113229 + AluSx SINE Alu 1 307 -5 442 310 63 52 chrX 13860911 13861582 -163112558 + L1MC4a LINE L1 4489 5180 -966 885 207 104 28 chrX 13861664 13861915 -163112225 + L1MC4a LINE L1 5305 5574 -2234 399 196 0 54 chrX 13861923 13862035 -163112105 + L1MC4a LINE L1 5908 6013 -1795 205 300 100 0 chrX 13864038 13864108 -163110032 + MER91B DNA MER1_type 4 80 -110 271 320 29 48 chrX 13864456 13864559 -163109581 + L2 LINE L2 3152 3252 -20 24 0 0 0 chrX 13864559 13864583 -163109557 + AT_rich Low_complexity Low_complexity 1 24 0 687 271 116 14 chrX 13864619 13864826 -163109314 - MIR SINE MIR -28 234 7 243 299 179 52 chrX 13864944 13865287 -163108853 + L2 LINE L2 2716 3096 -176 398 71 0 0 chrX 13865288 13865344 -163108796 - MADE1 DNA Mariner 0 80 25 315 0 0 0 chrX 13865400 13865435 -163108705 + (TG)n Simple_repeat Simple_repeat 2 36 0 632 274 119 5 chrX 13865709 13865928 -163108212 + MIR SINE MIR 6 249 -13 641 285 92 18 chrX 13866958 13867186 -163106954 + MIR SINE MIR 10 254 -8 624 281 112 20 chrX 13867313 13867608 -163106532 - MARNA DNA Mariner -71 515 194 2110 133 0 0 chrX 13867632 13867925 -163106215 - AluSx SINE Alu -19 293 1 1125 178 62 0 chrX 13868377 13868585 -163105555 - MER58A DNA MER1_type -1 223 3 493 182 11 11 chrX 13868842 13868930 -163105210 - FLAM_A SINE Alu -21 121 34 369 237 126 65 chrX 13869497 13869869 -163104271 - L1ME4a LINE L1 -31 6090 5696 325 286 96 31 chrX 13869873 13870132 -163104008 + L1MC4a LINE L1 5647 5883 -238 4463 131 7 6 chrX 13870261 13870971 -163103169 + MER50 LTR ERV1 1 711 -23 253 301 124 35 chrX 13872050 13872163 -163101977 + L2 LINE L2 3134 3256 -16 22 0 0 0 chrX 13872491 13872513 -163101627 + AT_rich Low_complexity Low_complexity 1 22 0 1019 40 0 0 chrX 13872545 13872670 -163101470 + L1MA1 LINE L1 6178 6302 0 31 82 0 0 chrX 13874590 13874663 -163099477 + AT_rich Low_complexity Low_complexity 1 73 0 6162 45 11 2 chrX 13875517 13876317 -163097823 - L1PA7 LINE L1 -2 6152 5346 30 45 0 0 chrX 13876438 13876482 -163097658 + AT_rich Low_complexity Low_complexity 1 44 0 692 193 7 21 chrX 13877025 13877165 -163096975 - MER45A DNA AcHobo 0 178 41 835 261 37 14 chrX 13877341 13877556 -163096584 + MIR SINE MIR 6 225 -37 558 153 81 54 chrX 13877705 13877816 -163096324 + MER81 DNA DNA 1 114 0 661 125 17 0 chrX 13877866 13877986 -163096154 + GA-rich Low_complexity Low_complexity 1 122 0 1639 266 102 45 chrX 13878136 13878734 -163095406 + MER115 DNA AcHobo 61 692 -1 23 0 0 0 chrX 13879295 13879318 -163094822 + AT_rich Low_complexity Low_complexity 1 23 0 203 206 63 16 chrX 13879757 13879820 -163094320 + (CACAT)n Simple_repeat Simple_repeat 4 69 0 26 74 0 0 chrX 13880431 13880485 -163093655 + AT_rich Low_complexity Low_complexity 1 54 0 602 332 100 7 chrX 13880890 13881321 -163092819 + L1MC4a LINE L1 5459 5929 -1879 25 31 0 0 chrX 13881440 13881472 -163092668 + AT_rich Low_complexity Low_complexity 1 32 0 1704 137 0 10 chrX 13882623 13882916 -163091224 + L1PA13 LINE L1 5874 6163 0 25 75 0 0 chrX 13883382 13883435 -163090705 + AT_rich Low_complexity Low_complexity 1 53 0 195 270 88 88 chrX 13883623 13883760 -163090380 + MIR SINE MIR 47 183 -79 745 222 84 15 chrX 13883957 13884160 -163089980 - MIR SINE MIR -14 248 32 225 217 22 0 chrX 13884401 13884447 -163089693 - L2 LINE L2 -10 3262 3216 358 267 121 35 chrX 13885501 13885902 -163088238 + MLT1H1 LTR MaLR 108 549 0 362 276 89 16 chrX 13886227 13886350 -163087790 - MER5B DNA MER1_type 0 178 47 463 333 7 33 chrX 13886941 13887094 -163087046 + MIR3 SINE MIR 43 191 -17 1935 161 10 0 chrX 13887419 13887723 -163086417 - AluJb SINE Alu -5 307 1 229 288 0 17 chrX 13888623 13888682 -163085458 - L3 LINE CR1 -2 1575 1518 229 122 0 0 chrX 13888760 13888801 -163085339 - L1MA1 LINE L1 0 6302 6262 387 0 0 0 chrX 13888817 13888860 -163085280 + (TA)n Simple_repeat Simple_repeat 2 44 0 218 37 0 0 chrX 13888861 13888888 -163085252 + (TG)n Simple_repeat Simple_repeat 2 28 0 643 37 0 0 chrX 13888890 13888972 -163085168 - AluY SINE Alu -6 304 223 1233 89 6 0 chrX 13888972 13889151 -163084989 - L1MA1 LINE L1 -18 6284 6105 2524 76 0 0 chrX 13889222 13889523 -163084617 + AluSq SINE Alu 1 301 -12 630 121 0 0 chrX 13891677 13891776 -163082364 + L1MB2 LINE L1 6069 6167 -4 381 176 0 0 chrX 13893855 13893929 -163080211 + GA-rich Low_complexity Low_complexity 4 77 0 2016 226 65 29 chrX 13893929 13894202 -163079938 + L1ME3A LINE L1 5496 5758 -412 1963 203 77 29 chrX 13894202 13894684 -163079456 + MLT1D LTR MaLR 1 505 0 2016 226 65 29 chrX 13894684 13895057 -163079083 + L1ME3A LINE L1 5758 6165 -5 216 67 0 0 chrX 13895064 13895094 -163079046 + (TG)n Simple_repeat Simple_repeat 1 30 0 598 249 76 5 chrX 13895596 13895793 -163078347 - L1MB7 LINE L1 -47 6137 5927 1341 200 101 44 chrX 13895904 13896085 -163078055 - MLT1C LTR MaLR -7 460 291 2610 148 16 5 chrX 13896085 13896510 -163077630 + MSTB1 LTR MaLR 1 430 -2 1341 200 101 44 chrX 13896510 13896763 -163077377 - MLT1C LTR MaLR -176 291 1 23 0 0 0 chrX 13899347 13899370 -163074770 + AT_rich Low_complexity Low_complexity 1 23 0 892 235 34 133 chrX 13900421 13900776 -163073364 - L1MC4 LINE L1 0 8042 7756 2983 43 0 5 chrX 13900776 13901145 -163072995 - L1PA8 LINE L1 -2 6170 5804 892 235 34 133 chrX 13901145 13901325 -163072815 - L1MC4 LINE L1 -286 7756 7560 311 250 102 37 chrX 13901638 13901746 -163072394 + MIR SINE MIR 140 254 -8 495 250 38 25 chrX 13902145 13902305 -163071835 - MIR SINE MIR -55 207 46 250 250 14 0 chrX 13902747 13902819 -163071321 + MLT1L LTR MaLR 199 271 -344 495 228 53 53 chrX 13902838 13903027 -163071113 + MLT1J LTR MaLR 323 511 0 207 265 39 36 chrX 13903377 13903478 -163070662 - MIR SINE MIR -58 150 80 240 35 0 0 chrX 13903727 13903756 -163070384 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 325 296 23 30 chrX 13904073 13904205 -163069935 + MIR SINE MIR 124 254 -8 512 354 51 16 chrX 13904984 13905298 -163068842 - L3 LINE CR1 -45 1532 1208 234 309 69 26 chrX 13905323 13905503 -163068637 - MIR SINE MIR -9 253 9 872 145 0 0 chrX 13905590 13905714 -163068426 - FLAM_C SINE Alu -19 124 1 503 326 82 66 chrX 13905989 13906430 -163067710 + L2 LINE L2 2823 3270 -2 1039 173 5 34 chrX 13907181 13907389 -163066751 - MER20 DNA MER1_type -17 202 1 1267 126 165 54 chrX 13909909 13910170 -163063970 + AluJo SINE Alu 1 290 -12 23 0 0 0 chrX 13910247 13910270 -163063870 + AT_rich Low_complexity Low_complexity 1 23 0 286 316 140 24 chrX 13911699 13911863 -163062277 + MIR SINE MIR 59 240 -22 191 238 48 95 chrX 13912054 13912159 -163061981 - MIR SINE MIR -5 257 158 474 286 75 0 chrX 13912221 13912382 -163061758 - MIR SINE MIR -83 179 7 204 252 191 38 chrX 13912455 13912586 -163061554 - MIR3 SINE MIR -9 199 49 393 246 97 30 chrX 13913881 13914015 -163060125 + MIR SINE MIR 48 190 -72 397 243 230 14 chrX 13914382 13914530 -163059610 + MER5A DNA MER1_type 9 188 -1 394 250 29 64 chrX 13914934 13915106 -163059034 + MER69A DNA AcHobo 2 167 -10 344 336 0 22 chrX 13916122 13916256 -163057884 - L2 LINE L2 0 3313 3183 2627 107 3 8 chrX 13916668 13917034 -163057106 + THE1B LTR MaLR 1 364 0 684 93 0 0 chrX 13917483 13917580 -163056560 + (GA)n Simple_repeat Simple_repeat 2 98 0 1911 261 106 30 chrX 13917653 13918605 -163055535 + L2 LINE L2 2197 3214 -99 239 57 29 0 chrX 13919042 13919077 -163055063 + MER58A DNA MER1_type 49 84 -23 647 174 16 0 chrX 13919133 13919254 -163054886 + MER58A DNA MER1_type 99 221 -3 262 0 0 79 chrX 13919475 13919513 -163054627 - THE1C LTR MaLR -340 35 1 24 32 0 0 chrX 13919991 13920022 -163054118 + AT_rich Low_complexity Low_complexity 1 31 0 318 224 15 0 chrX 13920085 13920152 -163053988 + AluSp/q SINE Alu 235 302 -1 21 57 0 0 chrX 13921405 13921440 -163052700 + AT_rich Low_complexity Low_complexity 1 35 0 2797 223 23 7 chrX 13921595 13922209 -163051931 - MER82 DNA MER2_type -29 624 1 28 29 0 0 chrX 13922537 13922572 -163051568 + AT_rich Low_complexity Low_complexity 1 35 0 436 295 25 30 chrX 13922590 13922790 -163051350 - L1MC/D LINE L1 -2240 5568 5370 278 241 196 0 chrX 13922932 13923044 -163051096 + L3 LINE CR1 1279 1412 -165 26 30 0 0 chrX 13923152 13923185 -163050955 + AT_rich Low_complexity Low_complexity 1 33 0 202 311 379 0 chrX 13923309 13923441 -163050699 + MER5A DNA MER1_type 8 189 0 402 256 0 0 chrX 13923948 13924034 -163050106 - MER81 DNA DNA -26 88 3 410 283 186 41 chrX 13924440 13924709 -163049431 + L1ME LINE L1 3912 4219 -1927 2582 132 35 14 chrX 13925033 13925458 -163048682 + MER57B LTR ERV1 1 434 0 329 311 36 68 chrX 13925510 13925641 -163048499 + L1ME LINE L1 5601 5724 -397 2317 82 3 0 chrX 13925641 13925958 -163048182 + AluSg SINE Alu 1 310 0 329 311 36 68 chrX 13925958 13926048 -163048092 + L1ME LINE L1 5724 5815 -306 997 160 4 67 chrX 13926111 13926336 -163047804 - MER20 DNA MER1_type -5 214 4 1506 189 42 34 chrX 13926721 13927103 -163047037 - L1MB7 LINE L1 -72 6112 5728 184 275 0 0 chrX 13927305 13927345 -163046795 - L3 LINE CR1 -289 1288 1249 228 169 102 0 chrX 13928153 13928212 -163045928 + MER20 DNA MER1_type 1 65 -154 * 243 114 0 0 chrX 13928204 13928239 -163045901 - U2 snRNA snRNA -152 36 2 735 116 62 0 chrX 13928241 13928370 -163045770 + MER20 DNA MER1_type 41 177 -42 2558 77 0 3 chrX 13928594 13928907 -163045233 + AluSq SINE Alu 2 313 0 423 268 73 0 chrX 13929232 13929355 -163044785 - MIR SINE MIR -76 186 55 21 0 0 0 chrX 13930211 13930232 -163043908 + AT_rich Low_complexity Low_complexity 1 21 0 1368 201 109 6 chrX 13930362 13930711 -163043429 + L1MD3 LINE L1 7606 7990 -5 23 68 0 0 chrX 13930928 13930972 -163043168 + AT_rich Low_complexity Low_complexity 1 44 0 775 256 111 49 chrX 13932407 13932751 -163041389 - L2 LINE L2 0 3313 2949 249 335 91 11 chrX 13932833 13933009 -163041131 - MIR SINE MIR -48 214 25 198 0 0 0 chrX 13933467 13933489 -163040651 + (A)n Simple_repeat Simple_repeat 1 22 0 350 269 79 97 chrX 13935154 13935597 -163038543 - L1MC4a LINE L1 -53 6068 5634 383 281 121 25 chrX 13935603 13935802 -163038338 - L1MC4a LINE L1 -1128 5018 4801 487 288 48 0 chrX 13936527 13936652 -163037488 + L2 LINE L2 3180 3310 -3 22 0 0 0 chrX 13936674 13936696 -163037444 + AT_rich Low_complexity Low_complexity 1 22 0 993 165 0 100 chrX 13937528 13937682 -163036458 + MER3 DNA MER1_type 3 128 -81 2401 92 0 6 chrX 13937682 13937997 -163036143 - AluSq SINE Alu 0 313 1 993 165 0 100 chrX 13937997 13938072 -163036068 + MER3 DNA MER1_type 128 209 0 316 286 143 30 chrX 13938376 13938509 -163035631 + MER91A DNA MER1_type 47 194 -2 305 271 68 8 chrX 13938645 13938660 -163035480 - L1ME1 LINE L1 -5 6161 6147 3851 189 77 10 chrX 13938660 13939571 -163034569 - L1MA6 LINE L1 -12 6288 5317 557 204 7 27 chrX 13939581 13939728 -163034412 + L1MA6 LINE L1 5193 5336 -810 449 307 88 61 chrX 13939898 13940305 -163033835 + L2 LINE L2 1575 1992 -1322 1776 169 7 0 chrX 13940852 13941136 -163033004 - AluJo SINE Alu -25 287 2 260 296 38 53 chrX 13941150 13941282 -163032858 - MIR SINE MIR -105 157 28 1057 187 84 0 chrX 13941497 13941700 -163032440 - MER58A DNA MER1_type -3 221 2 435 357 5 10 chrX 13941783 13941982 -163032158 + L2 LINE L2 2880 3077 -195 880 270 121 14 chrX 13942187 13942543 -163031597 + LTR16C LTR ERVL 98 491 0 973 267 58 31 chrX 13942796 13943122 -163031018 + LTR16A LTR ERVL 53 387 -70 522 283 61 54 chrX 13944366 13944645 -163029495 - LTR16A1 LTR ERVL -2 455 175 207 88 0 0 chrX 13944989 13945023 -163029117 + (T)n Simple_repeat Simple_repeat 1 34 0 808 244 139 4 chrX 13945976 13946206 -163027934 + MIR SINE MIR 2 262 0 683 233 157 0 chrX 13946635 13946794 -163027346 - MER5A DNA MER1_type 0 189 6 254 235 0 106 chrX 13946890 13946975 -163027165 + MIR3 SINE MIR 85 160 -48 797 236 74 9 chrX 13947392 13947621 -163026519 + MIR SINE MIR 16 259 -3 282 316 13 0 chrX 13947795 13947871 -163026269 + L2 LINE L2 3196 3272 0 313 299 74 58 chrX 13949349 13949811 -163024329 + L1MC4a LINE L1 6058 6526 -1282 379 310 62 16 chrX 13950485 13950614 -163023526 - L2 LINE L2 -22 3250 3116 2382 61 0 35 chrX 13951880 13952193 -163021947 + AluY SINE Alu 1 302 -9 238 100 0 0 chrX 13952391 13952431 -163021709 + L1MB7 LINE L1 6135 6174 -10 214 289 40 0 chrX 13952644 13952720 -163021420 - L2 LINE L2 -9 3263 3185 1170 99 37 11 chrX 13952936 13953127 -163021013 - MER30 DNA MER1_type -34 196 1 2661 45 3 0 chrX 13953370 13953680 -163020460 + AluY SINE Alu 1 311 0 1645 63 0 9 chrX 13953950 13954171 -163019969 - L1PA6 LINE L1 -2 6152 5934 14396 106 22 56 chrX 13954978 13957481 -163016659 - Tigger1 DNA MER2_type 0 2418 1 343 329 78 17 chrX 13958757 13959170 -163014970 + L1MC/D LINE L1 5373 5810 -1998 210 37 0 0 chrX 13959487 13959514 -163014626 + (GA)n Simple_repeat Simple_repeat 2 28 0 393 250 201 14 chrX 13959677 13959821 -163014319 + MIR SINE MIR 20 190 -72 200 179 0 26 chrX 13959820 13959859 -163014281 + L2 LINE L2 3264 3301 -12 * 223 279 0 51 chrX 13959962 13960003 -163014137 - MIR SINE MIR -8 254 217 1481 154 59 0 chrX 13960003 13960309 -163013831 - MER33 DNA MER1_type 0 324 1 223 279 0 51 chrX 13960309 13960346 -163013794 - MIR SINE MIR -45 217 180 661 187 32 0 chrX 13960934 13961057 -163013083 - MIR SINE MIR -128 134 8 1525 225 25 83 chrX 13961470 13962035 -163012105 - LTR55 LTR ERV -16 532 1 523 318 36 5 chrX 13962211 13962403 -163011737 - MIR3 SINE MIR -8 200 3 2004 132 54 0 chrX 13964222 13964565 -163009575 - AluSx SINE Alu 0 359 1 560 131 16 55 chrX 13964999 13965182 -163008958 + CT-rich Low_complexity Low_complexity 4 179 0 658 99 57 36 chrX 13965219 13965907 -163008233 + CT-rich Low_complexity Low_complexity 1 701 0 1450 324 134 36 chrX 13965955 13967150 -163006990 + L2 LINE L2 1978 3313 0 315 221 15 0 chrX 13967225 13967293 -163006847 + MIR SINE MIR 191 259 -3 39 38 0 0 chrX 13967295 13967348 -163006792 + AT_rich Low_complexity Low_complexity 1 53 0 326 266 44 26 chrX 13968016 13968129 -163006011 + L1ME LINE L1 5653 5767 -354 2331 84 0 0 chrX 13969491 13969789 -163004351 - AluY SINE Alu -13 298 1 192 242 84 42 chrX 13970429 13970524 -163003616 - MIR3 SINE MIR -8 200 102 937 119 0 8 chrX 13970556 13970690 -163003450 + FLAM_C SINE Alu 1 133 -10 248 118 0 39 chrX 13970696 13970747 -163003393 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 233 253 101 0 chrX 13971494 13971573 -163002567 + L1MC4 LINE L1 6614 6700 -1342 258 32 0 0 chrX 13971644 13971675 -163002465 + (TG)n Simple_repeat Simple_repeat 2 32 0 476 214 18 18 chrX 13971770 13971882 -163002258 - L2 LINE L2 -6 3307 3196 2492 224 56 8 chrX 13971985 13972647 -163001493 - L1ME3A LINE L1 -7 6163 5470 2467 71 0 3 chrX 13973655 13973965 -163000175 + AluSc SINE Alu 1 309 0 337 262 125 42 chrX 13973977 13974145 -162999995 - MIR3 SINE MIR -7 201 20 1797 165 0 20 chrX 13974354 13974651 -162999489 - AluJo SINE Alu -21 291 1 11437 147 33 16 chrX 13974664 13975737 -162998403 - L1MA4 LINE L1 -3 6297 5244 2295 108 0 0 chrX 13975737 13976033 -162998107 - AluSx SINE Alu -16 296 1 11437 147 33 16 chrX 13976033 13978103 -162996037 - L1MA4 LINE L1 -1056 5244 3101 925 174 0 13 chrX 13978508 13978663 -162995477 - FRAM SINE Alu -12 164 12 398 336 95 15 chrX 13978711 13978985 -162995155 - L1MC/D LINE L1 -2027 5781 5486 2204 89 7 0 chrX 13979134 13979448 -162994692 - AluSx SINE Alu 0 316 1 2438 81 0 0 chrX 13979456 13979751 -162994389 - AluSq SINE Alu -18 295 1 245 162 15 0 chrX 13979907 13979975 -162994165 + CT-rich Low_complexity Low_complexity 2 70 0 405 0 0 0 chrX 13979976 13980021 -162994119 + (CA)n Simple_repeat Simple_repeat 2 46 0 2521 181 24 18 chrX 13981340 13981842 -162992298 + MLT1D LTR MaLR 1 505 0 1268 203 195 48 chrX 13981983 13982120 -162992020 - MLT1E LTR MaLR 0 593 477 1815 149 3 57 chrX 13982120 13982435 -162991705 + AluSx SINE Alu 6 303 -9 1268 203 195 48 chrX 13982435 13982814 -162991326 - MLT1E LTR MaLR -116 477 1 316 245 135 39 chrX 13983275 13983557 -162990583 - L1MC/D LINE L1 -827 5319 5011 1519 120 19 0 chrX 13983594 13983861 -162990279 - L1MA8 LINE L1 -3 6288 6017 868 250 19 29 chrX 13984014 13984253 -162989887 - MIR SINE MIR -1 261 25 515 178 178 0 chrX 13984558 13984659 -162989481 + FLAM_C SINE Alu 1 119 -14 748 71 390 7 chrX 13985934 13986075 -162988065 + AluSg/x SINE Alu 101 295 -14 525 268 93 80 chrX 13986305 13986693 -162987447 + MLT1J LTR MaLR 117 509 -2 795 208 69 24 chrX 13987039 13987327 -162986813 + L1MC5 LINE L1 7631 7931 -30 2547 64 6 0 chrX 13987758 13988069 -162986071 + AluSp SINE Alu 1 313 0 309 265 50 36 chrX 13988183 13988402 -162985738 + L1ME4a LINE L1 5722 5943 -178 1596 173 50 91 chrX 13988590 13988672 -162985468 + Charlie4a DNA MER1_type 27 111 -1850 640 115 35 0 chrX 13988672 13988785 -162985355 - L1MB3 LINE L1 0 6183 6067 1596 173 50 91 chrX 13988785 13989198 -162984942 + Charlie4a DNA MER1_type 111 502 -6 2584 97 39 12 chrX 13989552 13989964 -162984176 + L1MA8 LINE L1 5864 6286 -5 195 333 71 0 chrX 13991232 13991331 -162982809 - MIR SINE MIR 0 262 157 1992 139 5 62 chrX 13991339 13991707 -162982433 + MER7A DNA MER2_type 1 345 -1 372 316 126 50 chrX 13991948 13992305 -162981835 - L3 LINE CR1 -14 1563 1180 601 223 128 0 chrX 13992327 13992475 -162981665 + MIR SINE MIR 15 181 -81 514 276 9 74 chrX 13993374 13993591 -162980549 + MIR SINE MIR 35 237 -25 1316 167 42 90 chrX 13993921 13994275 -162979865 - MER58B DNA MER1_type -4 337 1 222 260 0 0 chrX 13994812 13994862 -162979278 - L2 LINE L2 -994 2320 2271 2450 65 3 7 chrX 13995095 13995402 -162978738 + AluSp SINE Alu 1 306 -7 1934 132 9 11 chrX 14196024 14196372 -162777768 + L1MA2 LINE L1 5958 6304 0 336 180 171 72 chrX 14196410 14196521 -162777619 + FLAM_C SINE Alu 2 123 -10 240 222 16 16 chrX 14196528 14196591 -162777549 - MIR SINE MIR 0 262 200 914 156 49 126 chrX 14196670 14196879 -162777261 - MSTB1 LTR MaLR -187 245 58 2467 77 7 0 chrX 14196879 14197189 -162776951 - AluSp SINE Alu -1 312 1 914 156 49 126 chrX 14197189 14197242 -162776898 - MSTB1 LTR MaLR -374 58 3 1012 263 51 0 chrX 14197261 14197516 -162776624 + MER119 DNA MER1_type 5 272 -311 244 292 94 0 chrX 14198292 14198388 -162775752 - MIR3 SINE MIR -3 205 101 471 185 0 0 chrX 14199250 14199342 -162774798 + GA-rich Low_complexity Low_complexity 3 94 0 24 53 0 0 chrX 14199849 14199887 -162774253 + AT_rich Low_complexity Low_complexity 1 38 0 216 111 0 0 chrX 14200795 14200831 -162773309 + (TG)n Simple_repeat Simple_repeat 2 37 0 381 312 131 79 chrX 14201262 14201808 -162772332 + L2 LINE L2 2651 3231 -41 478 270 145 52 chrX 14201808 14202152 -162771988 - MLT1J2 LTR MaLR -4 446 71 469 222 142 40 chrX 14203296 14203521 -162770619 - MER112 DNA MER1_type 0 260 13 2259 98 3 16 chrX 14203968 14204275 -162769865 + AluSg SINE Alu 1 303 -7 317 322 47 23 chrX 14204353 14204524 -162769616 + L1M4 LINE L1 2111 2285 -3861 2272 72 7 0 chrX 14204524 14204815 -162769325 + AluY SINE Alu 1 293 -18 1831 175 70 34 chrX 14205241 14205687 -162768453 - MLT1C LTR MaLR 0 467 6 21 0 0 0 chrX 14205824 14205845 -162768295 + AT_rich Low_complexity Low_complexity 1 21 0 2389 100 49 9 chrX 14205939 14206289 -162767851 - THE1B LTR MaLR 0 364 1 21 36 0 0 chrX 14206361 14206389 -162767751 + AT_rich Low_complexity Low_complexity 1 28 0 2613 43 0 0 chrX 14206815 14207118 -162767022 - AluY SINE Alu -8 303 1 912 152 0 0 chrX 14207255 14207387 -162766753 + FLAM_C SINE Alu 1 132 -11 201 196 0 0 chrX 14207608 14207654 -162766486 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 246 359 33 0 chrX 14207827 14207919 -162766221 + LTR33A LTR ERVL 68 162 -361 260 109 0 22 chrX 14207939 14207985 -162766155 + (CAG)n Simple_repeat Simple_repeat 3 47 0 256 184 92 23 chrX 14208251 14208338 -162765802 + LTR33A LTR ERVL 431 523 0 197 420 65 0 chrX 14208566 14208704 -162765436 + MIR3 SINE MIR 30 176 -32 316 281 46 46 chrX 14208734 14208864 -162765276 + MIR SINE MIR 38 166 -76 22 56 0 0 chrX 14208908 14208944 -162765196 + AT_rich Low_complexity Low_complexity 1 36 0 1066 146 87 36 chrX 14208980 14209199 -162764941 + MER6 DNA MER2_type 2 231 -634 198 0 0 0 chrX 14209199 14209221 -162764919 + (GA)n Simple_repeat Simple_repeat 1 22 0 866 188 0 6 chrX 14209223 14209404 -162764736 + GA-rich Low_complexity Low_complexity 1 180 0 533 196 20 0 chrX 14209432 14209534 -162764606 + MER6 DNA MER2_type 241 344 -261 595 227 0 0 chrX 14209543 14209675 -162764465 + L1 LINE L1 4052 4183 -1963 4982 169 17 4 chrX 14209825 14211411 -162762729 + L1PA14 LINE L1 4549 6159 -2 2230 155 3 5 chrX 14211411 14211795 -162762345 + L1PB4 LINE L1 5769 6154 -2 1365 102 41 20 chrX 14211795 14212041 -162762099 + MER6 DNA MER2_type 614 864 -1 438 261 18 0 chrX 14212154 14212265 -162761875 + MER81 DNA DNA 1 113 -1 4059 121 3 28 chrX 14212532 14213178 -162760962 + L1PB3 LINE L1 5525 6154 0 207 0 0 0 chrX 14213183 14213206 -162760934 + (TAA)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chrX 14213800 14213822 -162760318 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 236 365 17 26 chrX 14214250 14214365 -162759775 - MIR3 SINE MIR -92 116 3 252 86 0 0 chrX 14215016 14215051 -162759089 + (TG)n Simple_repeat Simple_repeat 1 35 0 494 265 27 92 chrX 14215079 14215331 -162758809 - MIR SINE MIR -21 241 4 1768 207 54 23 chrX 14215646 14216127 -162758013 + L1ME1 LINE L1 5685 6334 0 386 335 104 16 chrX 14217572 14217879 -162756261 + L1ME4a LINE L1 5716 6049 -72 4837 147 17 11 chrX 14218440 14219312 -162754828 - L1MB7 LINE L1 -24 6160 5284 750 247 81 0 chrX 14219904 14220090 -162754050 - MIR SINE MIR -44 218 18 180 157 0 118 chrX 14220428 14220479 -162753661 + L2 LINE L2 3228 3272 0 3222 175 28 0 chrX 14220983 14221565 -162752575 - MER90 LTR ERV1 -11 603 6 523 185 0 0 chrX 14221668 14221760 -162752380 - FLAM SINE Alu -11 132 41 188 83 0 28 chrX 14221766 14221802 -162752338 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 4401 30 0 0 chrX 14221802 14222337 -162751803 - L1PA3 LINE L1 -24 6131 5597 2323 14 0 0 chrX 14222334 14222613 -162751527 + L1PA3 LINE L1 5328 5606 -549 * 11706 35 7 0 chrX 14222589 14224104 -162750036 + L1P LINE L1 2487 4012 -2134 30 59 0 0 chrX 14224513 14224564 -162749576 + AT_rich Low_complexity Low_complexity 1 51 0 627 296 20 20 chrX 14225007 14225311 -162748829 - L1MC/D LINE L1 -1995 5813 5510 230 296 185 22 chrX 14225639 14225774 -162748366 + L2 LINE L2 2601 2757 -557 281 374 61 5 chrX 14225798 14225996 -162748144 + L2 LINE L2 2904 3112 -160 238 253 84 0 chrX 14226024 14226119 -162748021 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 366 91 0 0 chrX 14226771 14226826 -162747314 - L1MA9 LINE L1 0 6312 6258 426 20 0 0 chrX 14226827 14226878 -162747262 + (TG)n Simple_repeat Simple_repeat 1 51 0 3319 158 5 3 chrX 14226878 14227455 -162746685 - L1MA9 LINE L1 -161 6151 5574 495 268 85 32 chrX 14227571 14227817 -162746323 - MIR SINE MIR 0 262 4 522 287 112 60 chrX 14228068 14228336 -162745804 + MLT1I LTR MaLR 128 409 0 1982 133 75 26 chrX 14229166 14229513 -162744627 - THE1B LTR MaLR 0 364 1 684 277 148 26 chrX 14230451 14230541 -162743599 + MLT1L LTR MaLR 1 79 -536 1239 202 67 52 chrX 14230541 14231002 -162743138 + LTR37B LTR ERV1 1 468 0 684 277 148 26 chrX 14231002 14231377 -162742763 + MLT1L LTR MaLR 79 523 -92 13055 24 0 0 chrX 14231402 14233708 -162740432 - L1PA3 LINE L1 0 6155 3857 6978 31 0 0 chrX 14233709 14234599 -162739541 + L1PA3 LINE L1 2949 3838 -2308 2681 70 8 6 chrX 14234954 14235312 -162738828 + L1PB2 LINE L1 5775 6133 -18 25 0 0 0 chrX 14235315 14235340 -162738800 + AT_rich Low_complexity Low_complexity 1 25 0 208 319 22 55 chrX 14235767 14235858 -162738282 - MIR3 SINE MIR -14 194 107 6279 97 6 0 chrX 14235975 14237751 -162736389 - L1PA10 LINE L1 -2 6166 4385 485 183 189 29 chrX 14238483 14238634 -162735506 + MER5A DNA MER1_type 4 182 -7 212 333 14 14 chrX 14238635 14238707 -162735433 - MIR3 SINE MIR -42 166 95 259 287 129 0 chrX 14239225 14239326 -162734814 - MER102a DNA MER1_type -7 323 210 420 200 164 50 chrX 14239488 14239628 -162734512 - L2 LINE L2 0 3313 3158 1257 277 66 29 chrX 14240951 14241659 -162732481 - L2 LINE L2 0 3313 2580 245 261 31 0 chrX 14241737 14241802 -162732338 - MIR SINE MIR -72 190 124 268 359 32 7 chrX 14241839 14241980 -162732160 - MIR SINE MIR -45 163 15 2210 158 65 10 chrX 14242228 14242628 -162731512 + MSTB LTR MaLR 3 424 -2 23 0 0 0 chrX 14242639 14242662 -162731478 + AT_rich Low_complexity Low_complexity 1 23 0 1196 224 93 93 chrX 14243311 14244088 -162730052 + LTR41 LTR ERVL 1 795 0 189 74 0 0 chrX 14244257 14244284 -162729856 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 268 212 30 0 chrX 14244285 14244351 -162729789 + (CAGAGA)n Simple_repeat Simple_repeat 6 73 0 271 213 11 161 chrX 14244460 14244634 -162729506 - L2 LINE L2 -70 3243 3096 1399 180 86 53 chrX 14244637 14244998 -162729142 - MLT1D LTR MaLR -9 496 124 534 272 206 22 chrX 14245068 14245414 -162728726 - L2 LINE L2 -254 3059 2654 263 350 0 0 chrX 14245417 14245497 -162728643 + MER117 DNA MER1_type 40 119 -78 249 258 3 0 chrX 14246219 14246291 -162727849 - L2 LINE L2 -4 3309 3237 321 184 174 0 chrX 14246314 14246412 -162727728 - L2 LINE L2 -778 2536 2422 293 319 60 17 chrX 14246885 14247034 -162727106 - MIR SINE MIR -66 142 36 564 187 47 0 chrX 14247248 14247355 -162726785 + L2 LINE L2 3197 3308 -5 180 111 0 0 chrX 14247955 14247982 -162726158 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 643 260 41 0 chrX 14247982 14248178 -162725962 - L1ME3A LINE L1 -4 6166 5963 314 283 97 9 chrX 14248759 14248872 -162725268 + L1MC4 LINE L1 6604 6726 -1316 542 238 199 0 chrX 14250396 14250547 -162723593 - MER5A DNA MER1_type 0 189 9 470 274 27 0 chrX 14251036 14251182 -162722958 + Charlie8 DNA MER1_type 419 568 -1849 1053 168 22 58 chrX 14251187 14251413 -162722727 - MER20 DNA MER1_type -1 218 1 1124 267 4 0 chrX 14251422 14251669 -162722471 - MIR SINE MIR 0 262 15 359 257 18 0 chrX 14251675 14251784 -162722356 + Charlie8 DNA MER1_type 579 689 -1728 2108 106 3 0 chrX 14251827 14252146 -162721994 - AluSq SINE Alu 0 320 1 1181 283 97 49 chrX 14253462 14254278 -162719862 + Charlie8 DNA MER1_type 1529 2383 -34 1179 283 91 17 chrX 14255434 14255907 -162718233 - L2 LINE L2 -2 3311 2804 200 35 35 0 chrX 14255917 14255946 -162718194 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1564 231 116 24 chrX 14255950 14256274 -162717866 + MLT1H1 LTR MaLR 16 402 -153 2179 122 7 3 chrX 14256274 14256570 -162717570 + AluSx SINE Alu 1 297 -15 1564 231 116 24 chrX 14256570 14256738 -162717402 + MLT1H1 LTR MaLR 402 553 -2 280 136 15 15 chrX 14256755 14256821 -162717319 + L1PB1 LINE L1 6086 6151 0 249 68 23 0 chrX 14256839 14256883 -162717257 + L1MB4 LINE L1 6126 6170 -10 866 288 144 0 chrX 14256890 14257251 -162716889 - L2 LINE L2 -1198 2116 1704 275 359 28 0 chrX 14257825 14258042 -162716098 + L1ME LINE L1 4106 4328 -1818 351 0 0 0 chrX 14258145 14258184 -162715956 + (TG)n Simple_repeat Simple_repeat 2 40 0 411 327 75 52 chrX 14258280 14258720 -162715420 + L1ME LINE L1 4585 5034 -1112 373 156 44 0 chrX 14258798 14258888 -162715252 - L1MB3 LINE L1 -3 6180 6087 377 204 184 20 chrX 14258954 14259101 -162715039 + L1ME LINE L1 5257 5427 -2381 1047 236 116 75 chrX 14259124 14259632 -162714508 + MLT1H LTR MaLR 21 549 0 406 298 57 27 chrX 14259715 14259977 -162714163 + L1ME LINE L1 5536 5805 -316 2248 112 0 7 chrX 14260303 14260608 -162713532 + AluSx SINE Alu 5 307 -5 326 218 0 0 chrX 14260621 14260676 -162713464 - L2 LINE L2 -12 3260 3206 216 191 0 0 chrX 14260787 14260834 -162713306 + A-rich Low_complexity Low_complexity 1 47 0 1713 176 48 27 chrX 14261656 14262031 -162712109 + MLT1B LTR MaLR 1 383 -7 261 297 22 0 chrX 14262258 14262349 -162711791 - HERVL LTR ERVL -3840 1814 1722 390 316 23 60 chrX 14262608 14262874 -162711266 - HERVL LTR ERVL -4321 1443 1188 204 226 0 19 chrX 14262976 14263029 -162711111 + (TTG)n Simple_repeat Simple_repeat 2 53 0 352 234 23 0 chrX 14263189 14263317 -162710823 + L1M4 LINE L1 3368 3498 -2648 2190 157 68 19 chrX 14263328 14263811 -162710329 + L1MB8 LINE L1 5672 6178 0 34 42 0 0 chrX 14264130 14264178 -162709962 + AT_rich Low_complexity Low_complexity 1 48 0 339 298 90 27 chrX 14264396 14264806 -162709334 - L1MC4a LINE L1 -1959 5849 5414 321 318 48 0 chrX 14264847 14264973 -162709167 - L1MC4a LINE L1 -804 5342 5211 21 36 0 0 chrX 14265024 14265052 -162709088 + AT_rich Low_complexity Low_complexity 1 28 0 2026 121 31 3 chrX 14265059 14265348 -162708792 - AluJo SINE Alu -15 297 1 1685 184 19 19 chrX 14265581 14265891 -162708249 - AluJo SINE Alu -2 310 1 845 271 25 58 chrX 14266312 14266628 -162707512 + L2 LINE L2 2748 3045 -268 1510 191 83 14 chrX 14266628 14266989 -162707151 + MLT1B LTR MaLR 1 386 -4 845 271 25 58 chrX 14266989 14267107 -162707033 + L2 LINE L2 3045 3165 -148 3539 125 24 3 chrX 14267117 14267709 -162706431 - L1MA3 LINE L1 0 6305 5702 1371 101 0 5 chrX 14267709 14267908 -162706232 + L1MA3 LINE L1 5506 5703 -601 640 228 6 43 chrX 14267911 14268073 -162706067 + L2 LINE L2 3158 3313 0 480 309 38 58 chrX 14268326 14268669 -162705471 - LTR16C LTR ERVL -52 439 104 546 266 76 22 chrX 14269747 14269931 -162704209 - MIR SINE MIR -16 246 53 1388 224 151 18 chrX 14269972 14270476 -162703664 + MLT1G LTR MaLR 20 590 0 238 135 0 0 chrX 14270801 14270838 -162703302 + tRNA-Glu-GAG tRNA tRNA 1 37 -38 280 308 34 87 chrX 14271717 14271983 -162702157 + MLT1J LTR MaLR 113 364 -147 564 219 148 6 chrX 14272250 14272409 -162701731 - MER5A DNA MER1_type 0 189 5 186 43 0 0 chrX 14272469 14272492 -162701648 + (CA)n Simple_repeat Simple_repeat 2 24 0 228 35 0 0 chrX 14272492 14272521 -162701619 + (GA)n Simple_repeat Simple_repeat 1 29 0 350 253 14 12 chrX 14272522 14272624 -162701516 + MER5A DNA MER1_type 67 162 -16 567 238 106 5 chrX 14275434 14275600 -162698540 + MER5A DNA MER1_type 5 189 0 4268 121 36 8 chrX 14276206 14276931 -162697209 - L1MA8 LINE L1 -5 6286 5542 193 300 0 17 chrX 14278746 14278806 -162695334 - L2 LINE L2 0 3272 3214 1965 134 48 31 chrX 14278927 14279285 -162694855 - THE1B LTR MaLR 0 364 1 873 303 40 18 chrX 14279449 14279856 -162694284 + LTR16C LTR ERVL 72 457 0 396 206 128 0 chrX 14280200 14280302 -162693838 - MER63 DNA MER1_type -94 742 2 26 30 0 0 chrX 14282421 14282454 -162691686 + AT_rich Low_complexity Low_complexity 1 33 0 270 311 134 18 chrX 14282712 14282876 -162691264 + MIR SINE MIR 75 257 -5 265 272 132 29 chrX 14282873 14283009 -162691131 + L2 LINE L2 2725 2874 -440 * 621 312 56 26 chrX 14283050 14283313 -162690827 + LTR16C LTR ERVL 3 273 -218 1826 240 59 12 chrX 14283313 14283804 -162690336 - LTR40a LTR ERVL 0 519 6 628 203 28 7 chrX 14283830 14283973 -162690167 + LTR16C LTR ERVL 296 441 -50 908 193 45 6 chrX 14284686 14284862 -162689278 + MER5A DNA MER1_type 7 189 0 563 241 9 0 chrX 14285748 14285860 -162688280 + MER81 DNA DNA 1 113 -1 343 263 50 56 chrX 14286209 14286388 -162687752 + MER5B DNA MER1_type 1 178 0 853 190 18 0 chrX 14286402 14286565 -162687575 - MER5B DNA MER1_type -6 172 7 320 298 152 6 chrX 14286584 14286742 -162687398 + MER5A DNA MER1_type 9 189 0 450 244 191 8 chrX 14288110 14288241 -162685899 + MER5A DNA MER1_type 35 189 0 462 310 13 19 chrX 14288249 14288404 -162685736 + MER5B DNA MER1_type 1 154 -24 2111 113 7 39 chrX 14288546 14288856 -162685284 + AluSx SINE Alu 1 300 -12 248 264 56 0 chrX 14288965 14289037 -162685103 + MIR SINE MIR 66 141 -67 1377 147 31 0 chrX 14289098 14289322 -162684818 + LTR32 LTR ERVL 14 244 -227 715 178 68 0 chrX 14289355 14289501 -162684639 + LTR32 LTR ERVL 316 471 0 320 225 0 50 chrX 14289514 14289594 -162684546 - MER81 DNA DNA -38 76 1 8546 176 73 20 chrX 14289884 14289949 -162684191 + L1MA2 LINE L1 13 73 -7492 2485 85 0 0 chrX 14289949 14290254 -162683886 - AluSc SINE Alu -4 305 1 8546 176 73 20 chrX 14290254 14291949 -162682191 + L1MA2 LINE L1 73 1865 -5700 * 11119 150 21 12 chrX 14291939 14292471 -162681669 + L1MA2 LINE L1 4446 4972 -2751 2266 92 0 3 chrX 14292471 14292764 -162681376 - AluY SINE Alu -19 292 1 11119 150 21 12 chrX 14292764 14294616 -162679524 + L1MA2 LINE L1 4972 6867 -856 2230 105 40 35 chrX 14294616 14294989 -162679151 + THE1C LTR MaLR 1 375 0 11119 150 21 12 chrX 14294989 14295837 -162678303 + L1MA2 LINE L1 6867 7706 -17 3220 71 0 7 chrX 14295838 14296273 -162677867 - MLT2A1 LTR ERVL -10 434 3 252 0 0 0 chrX 14296545 14296573 -162677567 + (TGG)n Simple_repeat Simple_repeat 2 29 0 571 283 75 97 chrX 14296805 14297518 -162676622 + L2 LINE L2 2602 3312 -1 343 22 43 0 chrX 14297576 14297622 -162676518 + LTR37A LTR ERV1 1 48 -378 1267 173 58 4 chrX 14297623 14297883 -162676257 - MER58B DNA MER1_type -2 339 66 2695 176 76 34 chrX 14297891 14298309 -162675831 - L1ME1 LINE L1 -141 6025 5626 2220 92 3 0 chrX 14298309 14298633 -162675507 - AluSx SINE Alu 0 325 1 2695 176 76 34 chrX 14298633 14299061 -162675079 - L1ME1 LINE L1 -540 5626 5140 1371 202 102 11 chrX 14299058 14299439 -162674701 + L1ME1 LINE L1 4734 5149 -997 * 350 198 50 20 chrX 14299432 14299533 -162674607 - L1MC/D LINE L1 -2073 5735 5632 * 683 200 113 6 chrX 14300509 14300629 -162673511 - MER5B DNA MER1_type -1 177 34 10527 28 0 0 chrX 14300629 14302636 -162671504 - L1PA4 LINE L1 0 6155 4139 683 200 113 6 chrX 14302636 14302675 -162671465 - MER5B DNA MER1_type -144 34 1 1425 206 17 78 chrX 14302698 14303111 -162671029 + MLT1B LTR MaLR 1 388 -2 23 0 0 0 chrX 14303713 14303736 -162670404 + AT_rich Low_complexity Low_complexity 1 23 0 2290 83 0 3 chrX 14303736 14304024 -162670116 - AluSx SINE Alu -21 291 5 186 167 0 0 chrX 14304148 14304184 -162669956 + (CA)n Simple_repeat Simple_repeat 2 37 0 1604 297 49 19 chrX 14304439 14305537 -162668603 - HERV16 LTR ERVL -2904 2092 982 2583 206 74 25 chrX 14305547 14306140 -162668000 + MLT1E1 LTR MaLR 5 626 -28 2999 38 8 0 chrX 14306143 14306510 -162667630 + L1PA3 LINE L1 5783 6152 -3 45 0 0 0 chrX 14306510 14306555 -162667585 + AT_rich Low_complexity Low_complexity 1 45 0 629 280 71 52 chrX 14306562 14306926 -162667214 - HERV16 LTR ERVL -4015 981 611 1416 246 47 40 chrX 14307478 14307929 -162666211 - LTR16A1 LTR ERVL 0 457 4 898 284 135 42 chrX 14307978 14308408 -162665732 + L2 LINE L2 2804 3273 -40 180 111 0 0 chrX 14308435 14308462 -162665678 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1006 210 11 0 chrX 14308515 14308701 -162665439 - MER5A DNA MER1_type 0 189 2 347 219 203 21 chrX 14308969 14309206 -162664934 + L1ME4a LINE L1 5838 6117 -4 22 80 0 0 chrX 14309944 14309994 -162664146 + AT_rich Low_complexity Low_complexity 1 50 0 2474 65 16 3 chrX 14310091 14310398 -162663742 + AluY SINE Alu 1 311 0 9664 162 14 7 chrX 14310504 14310528 -162663612 - L1M1 LINE L1 -743 6822 6800 2169 126 32 24 chrX 14310528 14310900 -162663240 + THE1C LTR MaLR 1 375 0 10581 109 15 28 chrX 14310900 14312501 -162661639 + THE1C-int LTR MaLR 1 1580 0 2260 139 16 16 chrX 14312501 14312876 -162661264 + THE1C LTR MaLR 1 375 0 9664 162 14 7 chrX 14312876 14314919 -162659221 - L1M1 LINE L1 -764 6801 4843 3833 159 6 6 chrX 14314913 14315581 -162658559 - L1M1 LINE L1 -6886 679 12 * 1788 262 73 10 chrX 14315846 14316472 -162657668 + L1ME3 LINE L1 5489 6154 -8 183 314 121 0 chrX 14316583 14316707 -162657433 + L2 LINE L2 3163 3301 -12 409 112 0 61 chrX 14317074 14317172 -162656968 + (GGGA)n Simple_repeat Simple_repeat 2 93 0 516 77 0 0 chrX 14317853 14317931 -162656209 + (CA)n Simple_repeat Simple_repeat 2 79 0 1050 208 27 23 chrX 14319353 14319574 -162654566 - MER58A DNA MER1_type 0 224 3 494 318 80 19 chrX 14319581 14319845 -162654295 - L1MEd LINE L1 -4969 1150 871 252 269 28 9 chrX 14320843 14320951 -162653189 + L1 LINE L1 2248 2357 -3789 264 313 94 28 chrX 14320986 14321654 -162652486 + L1 LINE L1 2423 3134 -3012 2168 151 35 55 chrX 14321667 14322244 -162651896 - MLT2A2 LTR ERVL 0 554 1 1197 107 36 5 chrX 14322337 14322533 -162651607 - L1MA9 LINE L1 -278 6034 5833 906 123 0 0 chrX 14322526 14322672 -162651468 + L1MA9 LINE L1 6018 6163 -149 * 303 271 86 41 chrX 14322653 14322874 -162651266 - L1MC/D LINE L1 -2264 5544 5314 * 758 134 0 0 chrX 14323035 14323169 -162650971 + L1MA9 LINE L1 6169 6302 -10 270 241 62 47 chrX 14323264 14323443 -162650697 + L1 LINE L1 3547 3737 -2409 * 484 285 99 29 chrX 14323442 14323929 -162650211 + L1ME3A LINE L1 3875 4395 -1751 234 0 0 0 chrX 14323955 14323981 -162650159 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1061 210 37 14 chrX 14324026 14324240 -162649900 + MER58A DNA MER1_type 3 221 -3 301 239 0 0 chrX 14324379 14324450 -162649690 + MER58 DNA MER1_type 211 281 -60 1824 56 0 4 chrX 14324477 14324711 -162649429 + L1PA8 LINE L1 5940 6172 0 506 307 64 37 chrX 14324764 14325943 -162648197 + L1ME3A LINE L1 4616 5884 -286 499 215 44 7 chrX 14326854 14326989 -162647151 - L1ME3A LINE L1 -4 6560 6421 1801 224 51 62 chrX 14326990 14327242 -162646898 - L1ME3A LINE L1 -249 6315 6062 1616 123 76 47 chrX 14327242 14327584 -162646556 - L1MA7 LINE L1 -2 6289 5938 1801 224 51 62 chrX 14327584 14327979 -162646161 - L1ME3A LINE L1 -502 6062 5675 234 218 0 36 chrX 14327982 14328037 -162646103 + CT-rich Low_complexity Low_complexity 4 56 0 559 259 118 7 chrX 14328041 14328330 -162645810 - L1ME3A LINE L1 -875 5665 5345 301 267 0 0 chrX 14328332 14328392 -162645748 + polypyrimidine Low_complexity Low_complexity 1 60 0 755 83 0 68 chrX 14328393 14328585 -162645555 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 501 168 13 45 chrX 14328611 14328766 -162645374 + CT-rich Low_complexity Low_complexity 1 150 0 2373 245 74 28 chrX 14328777 14329939 -162644201 - L1ME3A LINE L1 -1210 5330 4116 1197 217 87 32 chrX 14329993 14330339 -162643801 + MLT1A1 LTR MaLR 1 365 0 4451 197 10 75 chrX 14330339 14331452 -162642688 + MLT1A1-int LTR MaLR 1 1040 -695 340 272 56 6 chrX 14331488 14331668 -162642472 - L1ME3A LINE L1 -2768 3772 3584 320 403 28 39 chrX 14331854 14332137 -162642003 - L1ME3A LINE L1 -6242 298 19 389 292 47 41 chrX 14332192 14332363 -162641777 - L1M4b LINE L1 -5329 1530 1359 247 302 0 0 chrX 14332919 14332982 -162641158 + L2 LINE L2 2686 2748 -566 252 389 47 27 chrX 14333228 14333377 -162640763 + L2 LINE L2 3116 3267 -5 2516 16 3 20 chrX 14334488 14334793 -162639347 + L1PA4 LINE L1 5856 6155 0 2208 165 78 41 chrX 14335255 14335739 -162638401 - MLT1D LTR MaLR -1 504 3 313 288 98 20 chrX 14335783 14335936 -162638204 + MIR SINE MIR 93 257 -5 441 284 60 50 chrX 14336918 14337136 -162637004 - L2 LINE L2 -2 3311 3092 * 1641 292 165 19 chrX 14337117 14338142 -162635998 - L2 LINE L2 -317 2955 1781 776 261 39 19 chrX 14338875 14339135 -162635005 + MLT1J2 LTR MaLR 41 305 -145 615 247 68 0 chrX 14339447 14339609 -162634531 + MIR SINE MIR 73 245 -17 203 262 24 0 chrX 14339765 14339807 -162634333 - L2 LINE L2 -9 3263 3221 191 250 0 0 chrX 14339955 14339999 -162634141 + MIR SINE MIR 147 190 -72 810 137 48 27 chrX 14341384 14341530 -162632610 + FRAM SINE Alu 1 146 -30 463 188 21 0 chrX 14341532 14341628 -162632512 - L1MD1 LINE L1 -5 6237 6140 624 161 0 99 chrX 14341632 14341793 -162632347 - MER53 DNA DNA 0 189 45 453 36 0 0 chrX 14341843 14341898 -162632242 + (TA)n Simple_repeat Simple_repeat 2 56 0 1474 180 16 3 chrX 14341905 14342210 -162631930 - AluY SINE Alu 0 311 3 28 61 0 0 chrX 14342308 14342357 -162631783 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chrX 14342431 14342456 -162631684 + AT_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chrX 14342492 14342528 -162631612 + AT_rich Low_complexity Low_complexity 1 36 0 4147 89 6 6 chrX 14342748 14343374 -162630766 + L1MA3 LINE L1 5523 6148 -157 2982 28 3 0 chrX 14343372 14343736 -162630404 - L1PA6 LINE L1 -212 5942 5578 * 1599 46 0 0 chrX 14343736 14343929 -162630211 + L1PA6 LINE L1 5955 6151 -3 1227 78 0 0 chrX 14343938 14344105 -162630035 + L1MA3 LINE L1 6139 6305 0 465 66 0 0 chrX 14344185 14344246 -162629894 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 210 250 62 0 chrX 14344248 14344296 -162629844 - L2 LINE L2 -12 3301 3251 * 812 258 8 68 chrX 14344264 14344311 -162629829 - MIR SINE MIR -25 237 189 2054 109 34 14 chrX 14344311 14344604 -162629536 + AluSx SINE Alu 1 299 -13 812 258 8 68 chrX 14344604 14344808 -162629332 - MIR SINE MIR -73 189 1 667 241 159 0 chrX 14345921 14346128 -162628012 - MIR SINE MIR -12 250 11 384 269 199 46 chrX 14346627 14346843 -162627297 + MIR SINE MIR 14 262 0 1111 216 88 35 chrX 14347325 14347755 -162626385 - L1MC5 LINE L1 -36 7925 7473 1012 206 72 33 chrX 14347771 14347859 -162626281 - L1MC5 LINE L1 -390 7571 7488 198 0 0 0 chrX 14347859 14347881 -162626259 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 336 64 0 0 chrX 14347880 14347927 -162626213 + (CA)n Simple_repeat Simple_repeat 1 47 0 1012 206 72 33 chrX 14347881 14348197 -162625943 - L1MC5 LINE L1 -473 7488 7199 496 337 154 37 chrX 14349067 14350034 -162624106 + L2 LINE L2 1762 2841 -473 595 322 4 37 chrX 14350888 14351130 -162623010 - MIR SINE MIR -8 254 21 496 240 95 14 chrX 14351177 14351424 -162622716 - LTR16C LTR ERVL 0 491 187 323 244 269 19 chrX 14352182 14352342 -162621798 - MIR SINE MIR -12 250 51 192 77 0 0 chrX 14352348 14352374 -162621766 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 374 269 106 44 chrX 14352637 14352797 -162621343 - MIR3 SINE MIR -28 180 11 241 312 0 13 chrX 14355351 14355428 -162618712 + GA-rich Low_complexity Low_complexity 3 78 0 720 265 83 13 chrX 14356518 14356748 -162617392 - MIR SINE MIR -2 260 15 277 260 0 26 chrX 14357332 14357409 -162616731 - MIR3 SINE MIR -11 197 123 31 0 0 0 chrX 14357420 14357451 -162616689 + AT_rich Low_complexity Low_complexity 1 31 0 193 347 0 0 chrX 14357514 14357563 -162616577 - L2 LINE L2 -88 3225 3177 434 298 132 29 chrX 14357575 14357817 -162616323 + MLT1K LTR MaLR 7 273 -315 236 239 33 22 chrX 14358318 14358410 -162615730 + (TTTA)n Simple_repeat Simple_repeat 2 94 0 468 0 0 0 chrX 14358588 14358640 -162615500 + (TA)n Simple_repeat Simple_repeat 1 52 0 250 371 84 34 chrX 14359197 14359434 -162614706 + L2 LINE L2 2831 3079 -193 1372 279 111 53 chrX 14359451 14360435 -162613705 - L1MEd LINE L1 -5075 1044 4 1561 237 151 8 chrX 14361865 14362354 -162611786 + MLT1G LTR MaLR 32 590 0 345 283 23 107 chrX 14362373 14362496 -162611644 + ERVL LTR ERVL 3764 3896 -1868 1790 180 7 7 chrX 14362496 14362801 -162611339 + AluJb SINE Alu 1 305 -7 345 283 23 107 chrX 14362801 14362985 -162611155 + ERVL LTR ERVL 3896 4045 -1719 401 177 13 0 chrX 14363223 14363302 -162610838 + MER116 DNA Mariner 1 80 0 1210 269 16 72 chrX 14364026 14364528 -162609612 - L2 LINE L2 -36 3277 2804 641 228 146 0 chrX 14364537 14364695 -162609445 + MER5A DNA MER1_type 9 189 0 717 237 65 16 chrX 14364695 14364940 -162609200 - L2 LINE L2 -504 2810 2554 232 365 153 15 chrX 14365088 14365362 -162608778 - L2 LINE L2 -157 3115 2804 189 324 44 0 chrX 14365639 14365707 -162608433 + MIR SINE MIR 75 145 -117 204 328 15 0 chrX 14365780 14365847 -162608293 + MER5A DNA MER1_type 122 189 0 330 289 45 27 chrX 14365847 14365970 -162608170 - MIR3 SINE MIR -48 160 36 631 325 43 5 chrX 14365994 14366203 -162607937 + MIR SINE MIR 46 262 0 608 237 106 32 chrX 14367765 14368131 -162606009 + MLT1H LTR MaLR 30 543 -6 198 276 81 35 chrX 14368272 14368359 -162605781 - L2 LINE L2 -7 3265 3175 523 301 110 34 chrX 14369984 14370193 -162603947 - MIR SINE MIR -31 231 7 254 185 56 0 chrX 14371590 14371644 -162602496 - L1MC5 LINE L1 -73 7888 7832 426 201 52 35 chrX 14371749 14371923 -162602217 - L1MC5 LINE L1 -182 7779 7603 1273 261 75 25 chrX 14371952 14372434 -162601706 - LTR33 LTR ERVL -15 506 1 287 271 57 43 chrX 14372434 14372644 -162601496 - L1MC5 LINE L1 -398 7563 7351 253 268 115 25 chrX 14372626 14372783 -162601357 - L1MC5 LINE L1 -522 7439 7269 * 740 214 31 6 chrX 14372898 14373057 -162601083 + MER5B DNA MER1_type 12 174 -4 185 194 56 0 chrX 14373899 14373935 -162600205 - MIR SINE MIR -11 251 214 397 147 0 0 chrX 14374714 14374782 -162599358 - L1MA9 LINE L1 -38 6274 6207 359 280 96 16 chrX 14374878 14375003 -162599137 + L2 LINE L2 3133 3267 -5 278 106 21 0 chrX 14375123 14375170 -162598970 + (TC)n Simple_repeat Simple_repeat 1 48 0 465 300 98 34 chrX 14375179 14375589 -162598551 + L2 LINE L2 1711 2146 -1168 1335 210 111 36 chrX 14375590 14375923 -162598217 - LTR16C LTR ERVL 0 491 134 503 211 125 8 chrX 14376062 14376190 -162597950 - MIR SINE MIR -30 232 90 381 297 81 14 chrX 14376202 14376350 -162597790 + L2 LINE L2 2201 2358 -956 189 171 0 0 chrX 14376620 14376655 -162597485 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 675 261 136 46 chrX 14376657 14377181 -162596959 - L1ME4a LINE L1 -214 5907 5337 335 320 64 35 chrX 14377265 14377468 -162596672 - L1ME4a LINE L1 -927 5219 5011 2916 9 0 0 chrX 14377547 14377865 -162596275 - AluYb8 SINE Alu 0 318 1 232 208 118 34 chrX 14377892 14378070 -162596070 - L1ME4a LINE L1 -1339 4807 4615 300 259 86 35 chrX 14378173 14378370 -162595770 - L1ME4a LINE L1 -1697 4449 4243 494 277 78 10 chrX 14378620 14378916 -162595224 - L1ME4a LINE L1 -2203 3943 3628 1262 336 102 23 chrX 14379417 14380164 -162593976 - L3 LINE CR1 -85 1492 687 4216 112 10 65 chrX 14380222 14381476 -162592664 + L1MA8 LINE L1 4853 6040 -251 2991 76 32 5 chrX 14381477 14381910 -162592230 + L1MA1 LINE L1 5858 6302 0 1424 119 24 4 chrX 14381958 14382210 -162591930 + L1MA8 LINE L1 6025 6281 -10 420 287 9 19 chrX 14382212 14382320 -162591820 - L3 LINE CR1 -926 651 545 188 321 74 0 chrX 14382413 14382494 -162591646 - L3 LINE CR1 -1066 511 425 1971 206 50 12 chrX 14382499 14382995 -162591145 + L1ME1 LINE L1 5647 6161 -5 459 402 60 22 chrX 14383017 14383383 -162590757 - L3 LINE CR1 -1158 419 40 904 304 179 22 chrX 14384372 14384908 -162589232 - L3 LINE CR1 -2 1575 956 181 326 92 31 chrX 14385744 14385842 -162588298 - MIR SINE MIR -157 105 2 4095 115 58 5 chrX 14386044 14386665 -162587475 + L1MA8 LINE L1 5584 6245 -46 376 77 31 0 chrX 14386665 14386730 -162587410 + (TA)n Simple_repeat Simple_repeat 1 67 0 4095 115 58 5 chrX 14386730 14386775 -162587365 + L1MA8 LINE L1 6245 6286 -5 546 259 29 79 chrX 14386787 14387065 -162587075 + MLT1J LTR MaLR 95 358 -153 2083 144 6 40 chrX 14387269 14387617 -162586523 - MER1B DNA MER1_type 0 337 2 201 253 55 75 chrX 14388849 14388995 -162585145 + L2 LINE L2 1640 1782 -1532 677 134 22 30 chrX 14389016 14389150 -162584990 + L1MD1 LINE L1 6110 6242 0 4222 33 12 12 chrX 14389153 14389669 -162584471 + L1PA3 LINE L1 5640 6155 0 27 0 0 0 chrX 14389669 14389696 -162584444 + AT_rich Low_complexity Low_complexity 1 27 0 288 281 146 28 chrX 14390208 14390386 -162583754 + MIR SINE MIR 24 222 -40 1207 156 9 45 chrX 14391474 14391698 -162582442 + AluJb SINE Alu 83 298 -14 1383 166 108 25 chrX 14391867 14392181 -162581959 + MER58B DNA MER1_type 1 340 -1 640 188 56 80 chrX 14392186 14392399 -162581741 + MER3 DNA MER1_type 1 208 -1 * 1014 147 0 6 chrX 14392237 14392407 -162581733 - MER3 DNA MER1_type 0 209 41 752 207 24 12 chrX 14392551 14392715 -162581425 - LTR16C LTR ERVL -2 489 324 2798 44 11 0 chrX 14392715 14393127 -162581013 - L1P2 LINE L1 -723 5431 5016 2845 22 0 0 chrX 14393127 14393437 -162580703 + L1PA5 LINE L1 5840 6151 -3 821 246 66 6 chrX 14393443 14393626 -162580514 - LTR16C LTR ERVL -143 348 155 2341 85 14 0 chrX 14394366 14394661 -162579479 + AluSg SINE Alu 1 299 -11 2282 147 70 0 chrX 14395156 14395497 -162578643 - MLT1A1 LTR MaLR 0 365 1 1542 216 50 76 chrX 14395516 14395974 -162578166 - MLT1J1 LTR MaLR 0 446 1 1651 188 3 16 chrX 14397358 14397661 -162576479 + AluJb SINE Alu 1 299 -13 540 286 24 36 chrX 14398344 14398512 -162575628 - MER5A DNA MER1_type -3 186 21 509 275 21 7 chrX 14398847 14398989 -162575151 + MIR SINE MIR 116 259 -3 338 380 40 0 chrX 14399033 14399259 -162574881 - L2 LINE L2 -623 2691 2457 5126 178 17 3 chrX 14399563 14400862 -162573278 + L1MB7 LINE L1 4859 6176 -8 525 157 22 0 chrX 14400869 14401003 -162573137 + G-rich Low_complexity Low_complexity 5 141 0 262 267 17 17 chrX 14401005 14401121 -162573019 + GA-rich Low_complexity Low_complexity 5 120 0 376 196 56 19 chrX 14401199 14401306 -162572834 + MIR3 SINE MIR 59 169 -39 21 0 0 0 chrX 14402344 14402365 -162571775 + AT_rich Low_complexity Low_complexity 1 21 0 345 327 0 0 chrX 14402518 14402622 -162571518 + L2 LINE L2 2683 2786 -528 258 356 56 56 chrX 14402748 14403015 -162571125 + L2 LINE L2 2949 3215 -57 1488 217 40 29 chrX 14403156 14403534 -162570606 - L1ME3A LINE L1 -112 6058 5677 1755 130 12 0 chrX 14404776 14405029 -162569111 - L1PB3 LINE L1 -2 6152 5897 688 303 108 12 chrX 14405350 14405693 -162568447 - LTR16C LTR ERVL -43 448 73 397 284 47 9 chrX 14406203 14406419 -162567721 - L2 LINE L2 -26 3287 2974 700 218 2 3 chrX 14406835 14406984 -162567156 - L1ME1 LINE L1 -5 6161 6031 214 267 133 0 chrX 14407567 14407657 -162566483 - MIR SINE MIR -10 252 151 22 35 0 0 chrX 14407984 14408013 -162566127 + AT_rich Low_complexity Low_complexity 1 29 0 2432 90 3 0 chrX 14408057 14408369 -162565771 + AluSp SINE Alu 1 313 0 583 187 179 0 chrX 14408557 14408691 -162565449 + MER5A DNA MER1_type 26 183 -6 408 206 65 11 chrX 14408930 14409022 -162565118 + L2 LINE L2 3187 3283 -30 2263 142 35 16 chrX 14409025 14409398 -162564742 - MSTB LTR MaLR 0 426 47 314 135 0 0 chrX 14409398 14409450 -162564690 + MADE1 DNA Mariner 1 52 -28 817 227 57 43 chrX 14409662 14409944 -162564196 - MLT1J1 LTR MaLR -19 427 142 2361 214 114 2 chrX 14409945 14410427 -162563713 + MLT1F LTR MaLR 1 536 -6 447 241 90 23 chrX 14410432 14410565 -162563575 - MLT1J2 LTR MaLR -308 142 1 193 29 59 0 chrX 14412706 14412740 -162561400 + (TA)n Simple_repeat Simple_repeat 1 36 0 2135 117 30 0 chrX 14413890 14414188 -162559952 - AluSx SINE Alu -5 307 1 790 179 231 0 chrX 14414374 14414586 -162559554 - MER5C DNA MER1_type -63 261 1 504 241 41 67 chrX 14415112 14415307 -162558833 + MIR SINE MIR 19 208 -54 25 0 0 0 chrX 14416801 14416826 -162557314 + AT_rich Low_complexity Low_complexity 1 25 0 426 217 0 0 chrX 14416900 14416983 -162557157 + LTR16A LTR ERVL 366 448 -2 726 282 138 52 chrX 14418392 14418849 -162555291 - MLT1H LTR MaLR -16 533 38 431 323 180 6 chrX 14418916 14419083 -162555057 + MER91A DNA MER1_type 1 196 0 331 280 211 32 chrX 14419463 14419742 -162554398 + MLT1J1 LTR MaLR 115 443 -3 531 324 14 0 chrX 14419769 14419917 -162554223 - L2 LINE L2 -2028 1286 1137 428 272 32 8 chrX 14419925 14420050 -162554090 + L2 LINE L2 595 722 -2592 687 237 62 17 chrX 14420086 14420263 -162553877 - LTR16A1 LTR ERVL -3 454 270 344 210 227 17 chrX 14420254 14420373 -162553767 - LTR16A1 LTR ERVL -313 144 1 * 357 361 105 13 chrX 14421247 14421485 -162552655 - L2 LINE L2 -13 3259 3000 34 42 0 0 chrX 14421512 14421560 -162552580 + AT_rich Low_complexity Low_complexity 1 48 0 2071 228 55 35 chrX 14422576 14423158 -162550982 + L1ME1 LINE L1 5581 6334 0 907 142 0 22 chrX 14423548 14423682 -162550458 + FLAM_C SINE Alu 1 131 -2 502 172 11 0 chrX 14424113 14424206 -162549934 + MER20 DNA MER1_type 126 219 0 22 35 0 0 chrX 14426340 14426369 -162547771 + AT_rich Low_complexity Low_complexity 1 29 0 2342 122 35 24 chrX 14427118 14427487 -162546653 - THE1C LTR MaLR 0 375 3 1600 87 31 4 chrX 14428304 14428533 -162545607 + L1P4 LINE L1 5316 5550 -615 391 317 49 30 chrX 14428553 14428818 -162545322 + L1MC4a LINE L1 7146 7415 -393 * 423 273 119 37 chrX 14428786 14429163 -162544977 + L1MC5 LINE L1 7292 7699 -262 679 203 157 0 chrX 14429220 14429373 -162544767 + MER5A DNA MER1_type 13 189 0 2277 155 76 9 chrX 14429779 14430212 -162543928 + MLT1C LTR MaLR 6 467 0 787 270 51 13 chrX 14430270 14430507 -162543633 - MIR SINE MIR -11 251 6 516 231 25 85 chrX 14431660 14431859 -162542281 - 7SK RNA RNA -1 192 6 257 61 0 0 chrX 14431860 14431893 -162542247 - MIR SINE MIR -61 147 115 1453 256 60 46 chrX 14431994 14432381 -162541759 - L2 LINE L2 -176 3137 2743 2485 68 0 0 chrX 14432381 14432676 -162541464 + AluY SINE Alu 1 295 -16 1453 256 60 46 chrX 14432676 14433022 -162541118 - L2 LINE L2 -570 2743 2403 1035 210 6 0 chrX 14433022 14433203 -162540937 - MER58A DNA MER1_type 0 224 43 1535 261 43 21 chrX 14433266 14433687 -162540453 + MLT1G1 LTR MaLR 1 430 -165 420 117 0 0 chrX 14433758 14433835 -162540305 + (GA)n Simple_repeat Simple_repeat 2 78 0 2084 118 0 0 chrX 14433837 14434117 -162540023 - AluSx SINE Alu -32 280 1 469 156 21 31 chrX 14434119 14434215 -162539925 + MLT1G1 LTR MaLR 491 585 -10 773 286 103 41 chrX 14434227 14434589 -162539551 - MLT1I LTR MaLR 0 409 49 827 266 24 12 chrX 14434648 14434896 -162539244 - L2 LINE L2 -941 2373 2123 1766 156 64 26 chrX 14434896 14435242 -162538898 + THE1C LTR MaLR 1 359 -16 1269 282 83 5 chrX 14435243 14435665 -162538475 - L2 LINE L2 -1196 2118 1664 398 268 54 36 chrX 14435713 14435825 -162538315 - MIR3 SINE MIR -88 120 7 1184 209 19 0 chrX 14436801 14437007 -162537133 - MER63A DNA MER1_type 0 210 1 350 163 7 220 chrX 14437199 14437340 -162536800 - MER5B DNA MER1_type -62 116 6 432 333 11 6 chrX 14437355 14437529 -162536611 + MER5B DNA MER1_type 4 178 0 516 281 85 6 chrX 14438331 14438495 -162535645 + MIR SINE MIR 31 207 -55 882 192 54 6 chrX 14439047 14439214 -162534926 - MER5B DNA MER1_type -3 175 1 422 293 57 0 chrX 14439221 14439327 -162534813 + L2 LINE L2 3144 3255 -17 317 263 76 44 chrX 14440557 14440757 -162533383 - MER20B DNA MER1_type -5 214 2 2168 200 63 30 chrX 14441772 14442298 -162531842 + L1ME3 LINE L1 5620 6162 0 1864 114 0 0 chrX 14642302 14642556 -162331584 + AluSx SINE Alu 59 312 0 1423 191 15 29 chrX 14642565 14642871 -162331269 + AluJo SINE Alu 14 315 0 25 51 0 0 chrX 14642871 14642910 -162331230 + AT_rich Low_complexity Low_complexity 1 39 0 794 279 126 38 chrX 14643492 14643961 -162330179 + MLT1J LTR MaLR 2 511 0 206 289 0 0 chrX 14644498 14644550 -162329590 + CT-rich Low_complexity Low_complexity 2 53 0 1867 120 53 14 chrX 14644672 14644955 -162329185 - AluJb SINE Alu -18 294 1 297 320 20 0 chrX 14645048 14645148 -162328992 + L2 LINE L2 2929 3030 -242 1885 163 0 3 chrX 14645167 14645474 -162328666 + AluJo SINE Alu 1 306 -6 816 171 6 11 chrX 14645493 14645669 -162328471 + GA-rich Low_complexity Low_complexity 4 178 0 480 211 15 8 chrX 14645682 14645815 -162328325 + GA-rich Low_complexity Low_complexity 1 134 0 2823 16 0 0 chrX 14645912 14646216 -162327924 + AluY SINE Alu 1 304 -7 686 187 122 0 chrX 14646370 14646509 -162327631 - FAM SINE Alu -19 156 1 1643 203 107 24 chrX 14646780 14647249 -162326891 - Charlie4a DNA MER1_type 0 508 1 660 214 47 93 chrX 14647715 14647972 -162326168 + MER112 DNA MER1_type 7 251 -9 213 229 21 0 chrX 14647972 14648020 -162326120 + L3 LINE CR1 1523 1571 -6 22 0 0 0 chrX 14648069 14648091 -162326049 + AT_rich Low_complexity Low_complexity 1 22 0 931 202 77 114 chrX 14648096 14648247 -162325893 - L1MC4 LINE L1 0 8042 7887 2233 100 0 0 chrX 14648247 14648528 -162325612 - AluSx SINE Alu -29 283 3 931 202 77 114 chrX 14648528 14648842 -162325298 - L1MC4 LINE L1 -155 7887 7594 7550 185 151 13 chrX 14648852 14649208 -162324932 - L1PB1 LINE L1 -2 6149 5843 420 20 0 0 chrX 14649208 14649257 -162324883 + (TA)n Simple_repeat Simple_repeat 2 50 0 7550 185 151 13 chrX 14649257 14650190 -162323950 - L1PB1 LINE L1 -308 5843 5040 2144 116 0 7 chrX 14650190 14650482 -162323658 + AluSx SINE Alu 1 290 -22 7550 185 151 13 chrX 14650482 14652572 -162321568 - L1PB1 LINE L1 -1111 5040 2277 322 197 244 16 chrX 14652575 14652702 -162321438 + MLT1F LTR MaLR 321 476 -66 6591 192 109 41 chrX 14652716 14654432 -162319708 - L1MC4 LINE L1 -2 8040 6208 225 204 204 0 chrX 14654432 14654481 -162319659 + MLT1F LTR MaLR 491 549 -6 309 261 97 23 chrX 14654488 14654638 -162319502 - L1MC4a LINE L1 -455 7353 7248 364 180 11 11 chrX 14654927 14655016 -162319124 + GA-rich Low_complexity Low_complexity 4 92 0 1042 88 6 28 chrX 14655018 14655200 -162318940 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 194 167 167 0 chrX 14655459 14655501 -162318639 + L2 LINE L2 3232 3280 -33 2033 149 3 3 chrX 14655519 14655821 -162318319 - AluJo SINE Alu -10 302 1 237 279 93 0 chrX 14655870 14655956 -162318184 - L2 LINE L2 -29 3243 3150 23 0 0 0 chrX 14655970 14655993 -162318147 + AT_rich Low_complexity Low_complexity 1 23 0 185 32 0 65 chrX 14656221 14656237 -162317903 + (CAT)n Simple_repeat Simple_repeat 2 17 -13 2653 34 0 0 chrX 14656237 14656534 -162317606 - AluY SINE Alu -14 297 1 185 32 0 65 chrX 14656534 14656548 -162317592 + (CAT)n Simple_repeat Simple_repeat 17 30 0 246 290 100 30 chrX 14656758 14656989 -162317151 - L1ME4a LINE L1 -76 6045 5799 261 291 17 81 chrX 14657139 14657232 -162316908 - LTR37B LTR ERV1 -270 198 101 12106 147 59 35 chrX 14657232 14657485 -162316655 + Charlie5 DNA MER1_type 1 247 -2377 2448 84 0 0 chrX 14657485 14657781 -162316359 + AluSx SINE Alu 1 296 -16 12106 147 59 35 chrX 14657781 14660006 -162314134 + Charlie5 DNA MER1_type 247 2544 -80 2427 109 0 0 chrX 14660006 14660317 -162313823 - AluSx SINE Alu -1 311 1 12106 147 59 35 chrX 14660317 14660400 -162313740 + Charlie5 DNA MER1_type 2544 2624 0 261 291 17 81 chrX 14660400 14660478 -162313662 - LTR37B LTR ERV1 -367 101 38 2419 64 0 7 chrX 14660554 14660850 -162313290 + AluSg SINE Alu 1 294 -16 289 317 117 70 chrX 14660907 14661559 -162312581 - L2 LINE L2 -456 2858 2157 711 201 92 12 chrX 14661559 14661723 -162312417 + MER5B DNA MER1_type 2 178 0 289 317 117 70 chrX 14661723 14661897 -162312243 - L2 LINE L2 -1157 2157 1993 405 0 0 0 chrX 14661989 14662034 -162312106 + (CA)n Simple_repeat Simple_repeat 2 46 0 2745 189 38 49 chrX 14662866 14663547 -162310593 - L1MD3 LINE L1 0 8041 7381 297 167 0 0 chrX 14663897 14663951 -162310189 + (TA)n Simple_repeat Simple_repeat 2 55 0 1674 156 52 0 chrX 14663954 14664224 -162309916 - AluJo SINE Alu -28 284 1 315 266 126 53 chrX 14664730 14664937 -162309203 + MIR SINE MIR 26 247 -15 197 273 0 18 chrX 14664973 14665028 -162309112 + MIR3 SINE MIR 10 63 -145 2231 114 7 3 chrX 14665469 14665777 -162308363 + AluSx SINE Alu 1 309 -3 619 237 19 79 chrX 14665850 14666065 -162308075 - MIR SINE MIR -13 249 48 467 226 155 0 chrX 14666269 14666424 -162307716 + MIR SINE MIR 16 194 -68 2052 139 7 7 chrX 14666589 14666898 -162307242 + AluJo SINE Alu 3 311 -1 3781 142 66 41 chrX 14667270 14667996 -162306144 - L1MB5 LINE L1 0 6174 5431 609 201 104 18 chrX 14668017 14668054 -162306086 + MER5B DNA MER1_type 1 33 -145 306 0 0 0 chrX 14668054 14668088 -162306052 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 609 201 104 18 chrX 14668088 14668214 -162305926 + MER5B DNA MER1_type 33 178 0 2295 108 3 0 chrX 14668245 14668550 -162305590 - AluSx SINE Alu -6 306 1 21 36 0 0 chrX 14668768 14668796 -162305344 + AT_rich Low_complexity Low_complexity 1 28 0 219 69 0 0 chrX 14668960 14668989 -162305151 + (CCA)n Simple_repeat Simple_repeat 2 30 0 536 217 11 94 chrX 14669253 14669433 -162304707 - MER90 LTR ERV1 0 614 450 * 1674 153 254 8 chrX 14669424 14669790 -162304350 + LTR32 LTR ERVL 16 471 0 2022 171 14 37 chrX 14669791 14670219 -162303921 - MER90 LTR ERV1 -157 418 1 277 294 96 7 chrX 14670387 14670533 -162303607 - MER90-int LTR ERV1 -162 6639 6481 2036 147 7 0 chrX 14670735 14671035 -162303105 - AluSx SINE Alu -10 302 1 732 172 39 0 chrX 14671220 14671348 -162302792 - MER45A DNA AcHobo -4 174 42 27 49 0 0 chrX 14672606 14672647 -162301493 + GC_rich Low_complexity Low_complexity 1 41 0 22 94 0 0 chrX 14672855 14672919 -162301221 + GC_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chrX 14672925 14672948 -162301192 + GC_rich Low_complexity Low_complexity 1 23 0 2788 35 0 0 chrX 14673554 14673864 -162300276 + AluSg SINE Alu 1 310 0 222 296 99 33 chrX 14674246 14674398 -162299742 + MIR SINE MIR 15 176 -86 2147 112 0 29 chrX 14674779 14675091 -162299049 - AluSx SINE Alu -4 308 6 1151 149 128 78 chrX 14676363 14676644 -162297496 + AluJb SINE Alu 1 295 -7 2008 130 7 3 chrX 14676645 14676938 -162297202 + AluSx SINE Alu 1 294 -18 292 195 183 0 chrX 14677440 14677522 -162296618 - Charlie4a DNA MER1_type -2 506 410 2118 82 19 4 chrX 14677603 14677872 -162296268 - AluSg SINE Alu -37 273 1 863 211 131 11 chrX 14677873 14678148 -162295992 - Charlie4a DNA MER1_type -184 324 17 308 260 178 14 chrX 14678353 14678499 -162295641 - MIR SINE MIR -44 218 49 699 159 220 16 chrX 14678559 14678741 -162295399 + MER20 DNA MER1_type 1 219 0 243 296 42 49 chrX 14679255 14679397 -162294743 + MER5A DNA MER1_type 48 188 -1 936 170 180 0 chrX 14681763 14681963 -162292177 + MER46A DNA MER2_type 1 236 0 621 259 0 0 chrX 14682016 14682151 -162291989 - FLAM_A SINE Alu -7 135 1 6887 67 17 8 chrX 14682386 14683680 -162290460 - L1PA8 LINE L1 0 6172 4864 428 215 11 21 chrX 14683973 14684066 -162290074 + MIR SINE MIR 19 110 -152 2330 207 91 30 chrX 14684069 14684356 -162289784 - L1M4 LINE L1 -1995 4151 3883 180 97 0 0 chrX 14684356 14684387 -162289753 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2330 207 91 30 chrX 14684387 14684699 -162289441 - L1M4 LINE L1 -2263 3883 3502 1527 179 0 64 chrX 14684699 14685012 -162289128 - AluJb SINE Alu -19 293 1 2330 207 91 30 chrX 14685012 14685101 -162289039 - L1M4 LINE L1 -2644 3502 3420 3429 85 23 13 chrX 14685116 14685588 -162288552 - LTR15 LTR ERV1 -16 477 1 652 246 111 14 chrX 14685590 14685940 -162288200 - L1M4 LINE L1 -2724 3422 3039 577 264 112 11 chrX 14686152 14686330 -162287810 + MER58C DNA MER1_type 20 215 0 2009 128 10 0 chrX 14686797 14687085 -162287055 - AluSx SINE Alu -21 291 1 1686 125 53 15 chrX 14688258 14688406 -162285734 - AluJb SINE Alu -38 274 110 2477 78 0 3 chrX 14688406 14688715 -162285425 - AluSg SINE Alu 0 310 3 1686 125 53 15 chrX 14688715 14688830 -162285310 - AluJb SINE Alu -202 110 1 453 243 120 2 chrX 14689133 14689241 -162284899 - MLT1E1 LTR MaLR 0 654 560 1972 133 37 0 chrX 14689241 14689535 -162284605 - AluSx SINE Alu -7 305 1 2795 121 29 33 chrX 14689546 14690296 -162283844 - L1P5 LINE L1 -480 5671 4925 1115 183 25 29 chrX 14690391 14690632 -162283508 - L1MB7 LINE L1 -10 6174 5935 1235 112 0 0 chrX 14690632 14690793 -162283347 - AluSp SINE Alu -19 294 134 891 169 174 29 chrX 14690793 14691035 -162283105 - L1MB7 LINE L1 -234 5950 5674 410 97 187 18 chrX 14691477 14691576 -162282564 - L1ME1 LINE L1 -13 6153 6048 225 0 0 0 chrX 14692984 14693009 -162281131 + (T)n Simple_repeat Simple_repeat 1 25 0 693 173 58 0 chrX 14694468 14694607 -162279533 - MER5B DNA MER1_type -1 177 31 1859 164 11 0 chrX 14694618 14694904 -162279236 - AluJb SINE Alu -23 289 1 21 0 0 0 chrX 14695006 14695027 -162279113 + AT_rich Low_complexity Low_complexity 1 21 0 269 296 34 0 chrX 14695758 14695846 -162278294 - Charlie8 DNA MER1_type -313 2104 2014 986 211 4 60 chrX 14695954 14696186 -162277954 - Charlie8 DNA MER1_type -588 1829 1611 1262 242 116 34 chrX 14696768 14697235 -162276905 - MLT1D LTR MaLR 0 505 1 276 186 85 0 chrX 14697245 14697304 -162276836 - Charlie8 DNA MER1_type -2293 124 61 975 149 0 14 chrX 14697304 14697452 -162276688 + AluJb SINE Alu 1 146 -166 1899 82 4 34 chrX 14697452 14697721 -162276419 + AluY SINE Alu 45 305 -6 1161 152 6 0 chrX 14697741 14697919 -162276221 + AluJb SINE Alu 118 296 -16 438 20 0 0 chrX 14699006 14699057 -162275083 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 223 132 0 0 chrX 14699398 14699436 -162274704 + MER5B DNA MER1_type 3 40 -138 558 205 14 53 chrX 14699440 14699594 -162274546 - LTR35 LTR ERV1 -1 677 497 248 210 210 17 chrX 14700270 14700389 -162273751 - MER5B DNA MER1_type -36 142 1 412 203 23 39 chrX 14700426 14700554 -162273586 - MER5A DNA MER1_type -63 126 1 785 128 0 0 chrX 14700759 14700876 -162273264 + L1PB1 LINE L1 6033 6149 -2 214 290 167 0 chrX 14701149 14701287 -162272853 + L2 LINE L2 2216 2376 -938 1974 146 10 0 chrX 14701759 14702061 -162272079 - AluSx SINE Alu -7 305 1 1168 132 0 21 chrX 14702510 14702700 -162271440 - AluJb SINE Alu -7 305 120 2262 98 3 7 chrX 14702864 14703160 -162270980 + AluSx SINE Alu 1 295 -17 365 196 62 52 chrX 14703289 14703386 -162270754 - MER58 DNA MER1_type -109 106 9 2049 127 6 32 chrX 14704576 14704890 -162269250 + AluSx SINE Alu 1 306 -6 1631 102 4 4 chrX 14705178 14705403 -162268737 + AluSg/x SINE Alu 76 300 -12 518 224 267 0 chrX 14705643 14705804 -162268336 - MER3 DNA MER1_type -5 204 1 180 0 0 0 chrX 14706806 14706826 -162267314 + (T)n Simple_repeat Simple_repeat 1 20 0 1199 259 132 41 chrX 14708091 14708698 -162265442 + L1MC4 LINE L1 7143 7804 -238 571 246 45 17 chrX 14709459 14709638 -162264502 - L1MC5 LINE L1 -47 7914 7731 2134 119 7 3 chrX 14710242 14710536 -162263604 + AluSx SINE Alu 1 295 -17 5590 73 1 0 chrX 14711136 14711851 -162262289 - L1PA8 LINE L1 0 6172 5457 272 89 44 0 chrX 14711851 14711896 -162262244 + Alu SINE Alu 249 295 -5 24 53 0 0 chrX 14711898 14711936 -162262204 + AT_rich Low_complexity Low_complexity 1 38 0 238 317 149 0 chrX 14711987 14712195 -162261945 + L1ME LINE L1 3719 3957 -2189 1252 102 12 0 chrX 14712213 14712379 -162261761 + AluSg/x SINE Alu 130 297 -15 216 0 0 0 chrX 14712379 14712403 -162261737 + (TA)n Simple_repeat Simple_repeat 2 25 0 340 118 0 0 chrX 14712405 14712456 -162261684 + L1PA16 LINE L1 6106 6156 -10 346 275 121 45 chrX 14712860 14712990 -162261150 + L1ME LINE L1 4408 4527 -1619 2262 93 10 0 chrX 14712990 14713280 -162260860 + AluSx SINE Alu 1 293 -19 346 275 121 45 chrX 14713280 14713480 -162260660 + L1ME LINE L1 4527 4763 -1383 2528 49 3 16 chrX 14714001 14714306 -162259834 + AluY SINE Alu 1 301 -10 250 300 0 0 chrX 14714376 14714466 -162259674 + L1ME LINE L1 5467 5556 -565 1714 164 0 26 chrX 14714985 14715290 -162258850 - AluJb SINE Alu -15 297 1 21 71 0 0 chrX 14715320 14715362 -162258778 + AT_rich Low_complexity Low_complexity 1 42 0 869 145 0 0 chrX 14715690 14715814 -162258326 + FLAM_C SINE Alu 1 124 -19 35 24 0 0 chrX 14715815 14715857 -162258283 + AT_rich Low_complexity Low_complexity 1 42 0 248 241 98 9 chrX 14715948 14716060 -162258080 + MIR SINE MIR 87 208 -54 1301 166 15 5 chrX 14717774 14717979 -162256161 + AluJb SINE Alu 85 291 -21 2451 84 7 3 chrX 14718016 14718325 -162255815 + AluSx SINE Alu 1 310 -2 889 180 130 10 chrX 14718671 14718871 -162255269 + MER58A DNA MER1_type 1 224 0 2490 70 0 3 chrX 14718945 14719246 -162254894 - AluSp SINE Alu -13 300 1 1304 248 35 0 chrX 14719280 14719570 -162254570 - AluJb SINE Alu -10 302 3 2577 58 7 0 chrX 14720333 14720642 -162253498 + AluY SINE Alu 1 311 0 603 159 115 9 chrX 14721126 14721239 -162252901 + FLAM_A SINE Alu 10 134 -8 1950 140 3 19 chrX 14721684 14721991 -162252149 - AluSx SINE Alu -10 302 1 416 191 29 156 chrX 14722007 14722103 -162252037 + LTR45B LTR ERV1 324 390 -99 891 192 0 0 chrX 14722103 14722259 -162251881 + FRAM SINE Alu 1 156 -10 416 191 29 156 chrX 14722259 14722335 -162251805 + LTR45B LTR ERV1 390 474 -15 2247 98 0 3 chrX 14723131 14723427 -162250713 - AluSq SINE Alu -17 296 2 405 231 141 19 chrX 14723757 14723913 -162250227 - MLT1L LTR MaLR -221 394 220 324 227 11 45 chrX 14724782 14724870 -162249270 - MER5B DNA MER1_type -3 175 91 583 163 73 45 chrX 14724930 14725108 -162249032 + MER5A DNA MER1_type 1 183 -6 279 239 12 42 chrX 14725795 14725962 -162248178 + CT-rich Low_complexity Low_complexity 4 165 0 31 0 0 0 chrX 14726413 14726444 -162247696 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chrX 14726595 14726616 -162247524 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 22 0 0 0 chrX 14727499 14727521 -162246619 + AT_rich Low_complexity Low_complexity 1 22 0 365 113 0 0 chrX 14727521 14727574 -162246566 - Alu SINE Alu -10 292 240 2277 113 6 3 chrX 14727625 14727936 -162246204 - AluSx SINE Alu 0 312 1 1941 132 10 10 chrX 14729300 14729589 -162244551 - AluSx SINE Alu -23 289 1 1213 198 108 10 chrX 14729926 14730366 -162243774 - Charlie4a DNA MER1_type 0 508 1 38915 84 8 8 chrX 14731393 14737535 -162236605 - L1PA6 LINE L1 0 6154 11 571 306 84 16 chrX 14738411 14738502 -162235638 + L1MC4 LINE L1 6962 7045 -997 2401 84 0 0 chrX 14738502 14738799 -162235341 + AluY SINE Alu 1 297 -14 571 306 84 16 chrX 14738799 14739030 -162235110 + L1MC4 LINE L1 7045 7306 -736 1005 210 46 18 chrX 14739031 14739437 -162234703 - MLT1D LTR MaLR 0 505 43 1053 237 119 29 chrX 14739496 14739906 -162234234 + L1MC4 LINE L1 7315 7761 -281 2386 84 0 7 chrX 14740687 14740985 -162233155 + AluSx SINE Alu 1 296 -16 502 212 182 36 chrX 14741011 14741176 -162232964 - MER5A DNA MER1_type 0 189 1 4231 131 72 8 chrX 14741394 14741662 -162232478 + L1MA4 LINE L1 4558 4807 -1493 2578 63 0 0 chrX 14741662 14741965 -162232175 + AluY SINE Alu 1 303 -8 4231 131 72 8 chrX 14741965 14742701 -162231439 + L1MA4 LINE L1 4807 5613 -687 264 160 0 32 chrX 14742701 14742795 -162231345 + (TA)n Simple_repeat Simple_repeat 2 92 0 806 139 139 0 chrX 14742800 14742965 -162231175 - L1MA4 LINE L1 -332 5968 5781 2964 163 93 0 chrX 14743005 14743605 -162230535 + L1MA4 LINE L1 5642 6297 -3 1744 144 112 90 chrX 14744509 14744966 -162229174 + MLT1C LTR MaLR 1 467 0 267 230 144 101 chrX 14745009 14745148 -162228992 - MLT1I LTR MaLR 0 409 288 1615 128 4 0 chrX 14745470 14745704 -162228436 + AluSg/x SINE Alu 67 301 -11 1809 107 107 11 chrX 14746213 14746227 -162227913 - AluSq SINE Alu -15 298 287 351 0 0 0 chrX 14746227 14746266 -162227874 + (TG)n Simple_repeat Simple_repeat 2 40 0 1809 107 107 11 chrX 14746266 14746523 -162227617 - AluSq SINE Alu -26 287 1 2382 87 0 3 chrX 14746625 14746924 -162227216 + AluSg SINE Alu 1 298 -12 1379 111 11 0 chrX 14747353 14747543 -162226597 + AluSq SINE Alu 1 192 -121 649 250 95 38 chrX 14748128 14748263 -162225877 - L1ME LINE L1 -567 5603 5477 1828 133 4 25 chrX 14748263 14748541 -162225599 + AluSx SINE Alu 2 273 -39 252 0 0 0 chrX 14748541 14748569 -162225571 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 649 250 95 38 chrX 14748569 14749009 -162225131 - L1ME LINE L1 -692 5478 4999 2329 104 3 0 chrX 14749540 14749849 -162224291 - AluSx SINE Alu -2 310 1 2027 144 0 3 chrX 14750136 14750428 -162223712 + AluJb SINE Alu 1 291 -21 854 229 114 54 chrX 14751316 14751888 -162222252 + MER115 DNA AcHobo 1 4031 0 354 156 0 0 chrX 14752643 14752707 -162221433 + C-rich Low_complexity Low_complexity 5 68 0 1754 139 0 4 chrX 14752707 14752952 -162221188 - AluSx SINE Alu -32 280 37 243 236 0 0 chrX 14752996 14753068 -162221072 + CT-rich Low_complexity Low_complexity 1 72 0 545 260 27 7 chrX 14753296 14753446 -162220694 - MIR SINE MIR -108 154 2 614 253 56 11 chrX 14753563 14753741 -162220399 - LTR33A LTR ERVL -21 502 317 438 243 91 77 chrX 14753940 14754126 -162220014 - LTR33A LTR ERVL -349 174 13 400 261 27 80 chrX 14754177 14754365 -162219775 - MER104 DNA MER2_type -2 178 1 312 341 60 44 chrX 14754468 14754573 -162219567 - L2 LINE L2 -213 3059 2957 2556 51 0 6 chrX 14754573 14754884 -162219256 - AluY SINE Alu -2 309 1 312 341 60 44 chrX 14754884 14755030 -162219110 - L2 LINE L2 -315 2957 2804 789 160 9 173 chrX 14755460 14755536 -162218604 + MER5A DNA MER1_type 1 88 -101 2391 99 0 0 chrX 14755536 14755848 -162218292 + AluSx SINE Alu 1 312 0 789 160 9 173 chrX 14755848 14755932 -162218208 + MER5A DNA MER1_type 88 116 -73 2078 133 0 0 chrX 14755932 14756218 -162217922 - AluJb SINE Alu -26 286 1 789 160 9 173 chrX 14756218 14756281 -162217859 + MER5A DNA MER1_type 116 188 -1 2240 202 46 49 chrX 14756518 14756972 -162217168 + MER74B LTR ERVL 56 509 -113 4806 159 13 13 chrX 14756972 14757798 -162216342 - LTR1B LTR ERV1 0 826 1 2240 202 46 49 chrX 14757798 14757912 -162216228 + MER74B LTR ERVL 509 622 0 359 283 113 13 chrX 14757912 14758071 -162216069 + MIR SINE MIR 35 209 -53 345 256 40 44 chrX 14758469 14758606 -162215534 + MIR SINE MIR 16 164 -63 215 125 104 0 chrX 14758764 14758812 -162215328 + CT-rich Low_complexity Low_complexity 1 53 0 1922 105 69 0 chrX 14759807 14760083 -162214057 - AluSc SINE Alu -14 295 1 972 230 0 63 chrX 14760113 14760286 -162213854 - MER58A DNA MER1_type -2196 224 69 2173 121 0 16 chrX 14760286 14760601 -162213539 + AluJb SINE Alu 1 310 -2 972 230 0 63 chrX 14760601 14760666 -162213474 - MER58A DNA MER1_type -2351 69 1 1302 85 5 0 chrX 14761064 14761253 -162212887 - L1MA1 LINE L1 0 6302 6113 1780 92 0 32 chrX 14761936 14762221 -162211919 - AluSx SINE Alu 0 320 44 2026 145 0 3 chrX 14762226 14762516 -162211624 - AluSx SINE Alu -23 289 1 221 0 0 33 chrX 14762528 14762558 -162211582 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2141 92 7 0 chrX 14762567 14762838 -162211302 - AluSg SINE Alu -37 273 1 2047 130 3 7 chrX 14763648 14763955 -162210185 - AluSx SINE Alu -6 306 1 436 344 73 13 chrX 14766306 14766608 -162207532 - MARNA DNA Mariner -117 469 150 411 224 301 0 chrX 14766648 14766791 -162207349 + MER5A DNA MER1_type 4 189 0 1789 180 27 15 chrX 14767290 14767623 -162206517 - MER58B DNA MER1_type -4 337 1 25 0 0 0 chrX 14767772 14767797 -162206343 + AT_rich Low_complexity Low_complexity 1 25 0 24 19 0 38 chrX 14767935 14767949 -162206191 + AT_rich Low_complexity Low_complexity 1 14 -37 291 54 0 0 chrX 14767949 14767986 -162206154 + (CA)n Simple_repeat Simple_repeat 2 38 0 24 19 0 38 chrX 14767986 14768004 -162206136 + AT_rich Low_complexity Low_complexity 14 31 -20 2548 72 0 0 chrX 14768004 14768309 -162205831 - AluSx SINE Alu -7 305 1 24 19 0 38 chrX 14768309 14768328 -162205812 + AT_rich Low_complexity Low_complexity 31 51 0 22 56 0 0 chrX 14768660 14768696 -162205444 + AT_rich Low_complexity Low_complexity 1 36 0 2490 57 0 10 chrX 14768765 14769066 -162205074 + AluY SINE Alu 1 298 -13 231 304 15 70 chrX 14769965 14769991 -162204149 - MIR3 SINE MIR -30 178 152 760 156 101 45 chrX 14769991 14770170 -162203970 - MER5A DNA MER1_type 0 189 1 231 304 15 70 chrX 14770170 14770271 -162203869 - MIR3 SINE MIR -56 152 55 2072 99 34 17 chrX 14770926 14771218 -162202922 - AluSx SINE Alu -15 297 1 2322 144 68 23 chrX 14771339 14771734 -162202406 - LTR42 LTR ERVL 0 495 83 1187 144 0 0 chrX 14771734 14771907 -162202233 + AluSg/x SINE Alu 130 302 -8 359 168 0 119 chrX 14771907 14772008 -162202132 - LTR42 LTR ERVL -402 93 5 232 280 199 48 chrX 14772195 14772311 -162201829 - L2 LINE L2 -8 3305 3208 602 186 93 0 chrX 14772311 14772429 -162201711 + FLAM_A SINE Alu 2 130 -3 232 280 199 48 chrX 14772429 14773109 -162201031 - L2 LINE L2 -105 3208 2377 225 0 0 0 chrX 14773191 14773216 -162200924 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 333 0 0 0 chrX 14773215 14773252 -162200888 + (TA)n Simple_repeat Simple_repeat 1 37 0 564 295 29 0 chrX 14773257 14773461 -162200679 - MIR SINE MIR -36 226 18 365 327 39 0 chrX 14774293 14774449 -162199691 + MIR SINE MIR 37 198 -64 1896 121 0 95 chrX 14774452 14774790 -162199350 + AluSx SINE Alu 1 306 -6 984 260 12 8 chrX 14774892 14775146 -162198994 + MER46C DNA MER2_type 80 334 -4 521 210 54 65 chrX 14775152 14775338 -162198802 + MER53 DNA DNA 3 186 -3 627 267 102 0 chrX 14775338 14775525 -162198615 - MIR SINE MIR -32 230 25 21 36 0 0 chrX 14775593 14775621 -162198519 + AT_rich Low_complexity Low_complexity 1 28 0 2339 80 3 17 chrX 14776379 14776705 -162197435 + AluY SINE Alu 1 311 0 953 147 0 0 chrX 14776804 14776947 -162197193 - FLAM_C SINE Alu 0 143 1 317 257 47 9 chrX 14777629 14777798 -162196342 + MER115 DNA AcHobo 39 251 -442 231 222 0 0 chrX 14777863 14777903 -162196237 + Zaphod DNA AcHobo 3945 3984 -47 1147 246 108 42 chrX 14777903 14778417 -162195723 - MLT1H LTR MaLR 0 555 1 302 200 0 0 chrX 14778419 14778469 -162195671 + Zaphod DNA AcHobo 3982 4031 0 2160 129 3 3 chrX 14778513 14778816 -162195324 - AluSx SINE Alu -9 303 1 186 189 0 0 chrX 14780417 14780454 -162193686 + (CA)n Simple_repeat Simple_repeat 2 38 0 2214 91 29 16 chrX 14781054 14781363 -162192777 - AluSq SINE Alu 0 313 1 615 241 35 24 chrX 14781366 14781536 -162192604 - L1ME LINE L1 -394 5727 5556 2035 118 31 0 chrX 14781539 14781826 -162192314 + AluSq SINE Alu 1 296 -17 1011 225 67 0 chrX 14781906 14782115 -162192025 + MER58A DNA MER1_type 2 224 0 2046 111 37 13 chrX 14782245 14782543 -162191597 + AluSx SINE Alu 1 305 -7 371 331 39 31 chrX 14782779 14783033 -162191107 - L1M4 LINE L1 -2299 3847 3592 2073 152 0 0 chrX 14783198 14783495 -162190645 + AluSx SINE Alu 1 297 -15 490 216 35 0 chrX 14783528 14783644 -162190496 - L1MC4 LINE L1 0 8042 7923 253 237 14 36 chrX 14783663 14783802 -162190338 + (TA)n Simple_repeat Simple_repeat 2 137 0 186 250 0 0 chrX 14783951 14784023 -162190117 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 185 62 0 31 chrX 14784164 14784196 -162189944 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1865 160 0 4 chrX 14784196 14784477 -162189663 - AluSx SINE Alu -32 280 1 435 231 8 179 chrX 14784581 14784697 -162189443 + MIR SINE MIR 48 100 -162 1188 159 19 5 chrX 14784697 14784905 -162189235 + L1PB3 LINE L1 5943 6153 -1 435 231 8 179 chrX 14784905 14785039 -162189101 + MIR SINE MIR 100 255 -7 2314 107 0 0 chrX 14786084 14786384 -162187756 - AluSq SINE Alu -13 300 1 2266 115 0 3 chrX 14786841 14787154 -162186986 + AluSx SINE Alu 1 312 0 797 133 7 13 chrX 14787178 14787328 -162186812 + L1MA4 LINE L1 6143 6291 -9 2213 105 7 0 chrX 14787513 14787807 -162186333 - AluSx SINE Alu -14 298 3 493 272 42 62 chrX 14788143 14788371 -162185769 - MLT1K LTR MaLR -14 601 369 192 196 22 185 chrX 14788412 14788468 -162185672 - L2 LINE L2 -44 3269 3231 1648 102 159 0 chrX 14788468 14788755 -162185385 + AluSx SINE Alu 1 326 0 192 196 22 185 chrX 14788755 14788789 -162185351 - L2 LINE L2 -82 3231 3193 1207 196 34 40 chrX 14788835 14789161 -162184979 + MER33 DNA MER1_type 1 324 0 417 270 52 89 chrX 14789244 14789271 -162184869 + L2 LINE L2 3053 3079 -234 1594 181 49 3 chrX 14789271 14789558 -162184582 + AluSx SINE Alu 1 300 -12 417 270 52 89 chrX 14789558 14789800 -162184340 + L2 LINE L2 3079 3312 -1 322 174 58 0 chrX 14790152 14790221 -162183919 + MIR SINE MIR 63 135 -127 186 229 0 0 chrX 14790329 14790364 -162183776 + L2 LINE L2 3263 3297 -16 2172 116 0 0 chrX 14790761 14791054 -162183086 - AluSx SINE Alu -19 293 1 1973 214 52 2 chrX 14791132 14791594 -162182546 + Charlie4a DNA MER1_type 22 506 -2 1003 190 0 0 chrX 14791959 14792122 -162182018 + FRAM SINE Alu 2 164 -12 413 278 37 0 chrX 14793589 14793697 -162180443 - MIR SINE MIR -113 149 38 181 250 0 0 chrX 14793737 14793781 -162180359 - MIR SINE MIR -111 151 108 2050 122 22 113 chrX 14793784 14794193 -162179947 - THE1C LTR MaLR -3 372 1 188 206 0 0 chrX 14794195 14794229 -162179911 - MIR SINE MIR -152 110 77 1171 220 30 43 chrX 14794255 14794560 -162179580 - MER33 DNA MER1_type -1 323 23 615 213 16 0 chrX 14794580 14794702 -162179438 - MER5B DNA MER1_type -2 176 53 187 43 0 0 chrX 14794702 14794725 -162179415 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2282 95 0 0 chrX 14794725 14795010 -162179130 - AluSx SINE Alu -27 285 1 530 238 125 6 chrX 14795929 14796089 -162178051 - HsTC2 DNA Tc2 0 1898 1720 2588 111 15 15 chrX 14796095 14796490 -162177650 - L1PA13 LINE L1 -7 6156 5762 297 192 0 0 chrX 14796490 14796542 -162177598 - MER5A DNA MER1_type -126 63 12 2335 82 3 0 chrX 14797379 14797673 -162176467 - AluSg SINE Alu -15 295 1 524 318 80 17 chrX 14797907 14798196 -162175944 - L2 LINE L2 -351 2963 2657 1914 166 7 0 chrX 14798911 14799213 -162174927 + AluJb SINE Alu 1 304 -8 873 210 10 70 chrX 14799627 14799775 -162174365 + MER5A DNA MER1_type 2 137 -52 2329 90 0 26 chrX 14799775 14800087 -162174053 - AluSq SINE Alu -9 304 1 873 210 10 70 chrX 14800087 14800138 -162174002 + MER5A DNA MER1_type 136 189 0 508 282 160 11 chrX 14800489 14800677 -162173463 + MIR SINE MIR 35 250 -12 2066 101 11 14 chrX 14800798 14801084 -162173056 + AluSx SINE Alu 1 285 -27 1738 167 0 20 chrX 14802347 14802640 -162171500 + AluJo SINE Alu 1 287 -25 263 301 106 9 chrX 14803419 14803532 -162170608 - L2 LINE L2 -4 3268 3145 698 280 94 30 chrX 14803681 14803767 -162170373 + L1M4 LINE L1 4968 5047 -1099 2326 96 10 0 chrX 14803767 14803894 -162170246 + AluSx SINE Alu 3 127 -185 2328 88 3 19 chrX 14803894 14804211 -162169929 + AluSx SINE Alu 1 312 0 2326 96 10 0 chrX 14804211 14804385 -162169755 + AluSx SINE Alu 127 307 -5 698 280 94 30 chrX 14804385 14804670 -162169470 + L1M4 LINE L1 5047 5363 -783 492 155 225 8 chrX 14804685 14804814 -162169326 + L1ME3A LINE L1 5993 6149 -21 726 257 22 35 chrX 14805200 14805426 -162168714 - MIR SINE MIR -9 253 31 2344 89 20 0 chrX 14805585 14805887 -162168253 - AluSg SINE Alu -2 308 1 2254 103 0 3 chrX 14806751 14807041 -162167099 + AluSx SINE Alu 9 297 -15 189 0 0 0 chrX 14807235 14807256 -162166884 + (T)n Simple_repeat Simple_repeat 1 21 0 691 206 71 7 chrX 14810585 14810726 -162163414 - MER58B DNA MER1_type 0 341 192 621 246 102 80 chrX 14811247 14811735 -162162405 - L1MC5 LINE L1 -63 7898 7400 482 216 60 43 chrX 14811725 14811918 -162162222 + L1MC5 LINE L1 7023 7249 -625 * 264 310 62 9 chrX 14811920 14812033 -162162107 + L1MC4 LINE L1 7345 7463 -579 275 355 50 8 chrX 14812698 14812819 -162161321 + MIR3 SINE MIR 34 159 -49 249 368 83 15 chrX 14813540 14813673 -162160467 - MER91A DNA MER1_type -17 179 38 392 156 167 0 chrX 14814078 14814168 -162159972 - L1MA4 LINE L1 -2 6298 6194 * 11102 176 27 73 chrX 14814160 14816116 -162158024 - L1P4 LINE L1 -513 5652 3608 743 160 67 0 chrX 14816116 14816235 -162157905 - FLAM_A SINE Alu -6 127 1 11102 176 27 73 chrX 14816235 14817242 -162156898 - L1P4 LINE L1 -2557 3608 2868 2360 97 3 0 chrX 14817242 14817541 -162156599 + AluSq SINE Alu 1 300 -13 11102 176 27 73 chrX 14817541 14817954 -162156186 - L1P4 LINE L1 -3297 2868 2438 4390 153 10 14 chrX 14817979 14818683 -162155457 - L1M3f LINE L1 -4625 703 3 728 213 62 71 chrX 14819848 14820088 -162154052 - L1ME1 LINE L1 -4 6162 5925 2383 197 60 21 chrX 14820091 14820975 -162153165 - L1ME1 LINE L1 -309 5857 4935 2154 128 0 0 chrX 14820975 14821271 -162152869 - AluSx SINE Alu -16 296 1 2383 197 60 21 chrX 14821271 14821320 -162152820 - L1ME1 LINE L1 -1231 4935 4889 2288 121 0 0 chrX 14821358 14821665 -162152475 - AluSx SINE Alu 0 312 6 404 324 62 0 chrX 14821961 14822106 -162152034 + MIR3 SINE MIR 30 183 -25 471 261 42 28 chrX 14822795 14822937 -162151203 - MER5A DNA MER1_type 0 189 46 328 304 87 37 chrX 14822799 14822960 -162151180 + MER5A DNA MER1_type 18 186 -3 * 302 327 170 22 chrX 14823320 14823632 -162150508 + L2 LINE L2 2487 2844 -470 2549 118 28 3 chrX 14823669 14824024 -162150116 - THE1B LTR MaLR 0 364 1 2070 150 0 0 chrX 14824322 14824622 -162149518 - AluSx SINE Alu -12 300 1 2405 93 0 6 chrX 14824687 14824999 -162149141 - AluSg SINE Alu 0 310 1 282 292 10 31 chrX 14825025 14825121 -162149019 - L2 LINE L2 -2 3311 3218 318 115 0 0 chrX 14826071 14826123 -162148017 + (TTTCC)n Simple_repeat Simple_repeat 3 54 0 1034 309 47 12 chrX 14829139 14829564 -162144576 - MLT1L LTR MaLR 0 615 71 234 263 18 0 chrX 14829522 14829579 -162144561 - LTR67 LTR ERVL -401 156 99 * 2061 127 34 0 chrX 14829716 14830007 -162144133 - AluSx SINE Alu -11 301 1 24 0 0 0 chrX 14830043 14830067 -162144073 + AT_rich Low_complexity Low_complexity 1 24 0 309 276 5 73 chrX 14830119 14830311 -162143829 + GA-rich Low_complexity Low_complexity 1 179 0 2246 106 6 34 chrX 14830454 14830775 -162143365 + AluSx SINE Alu 1 312 0 274 230 120 20 chrX 14831962 14832062 -162142078 - L1ME4a LINE L1 -5 6116 6007 493 248 13 46 chrX 14832136 14832289 -162141851 + MER5A DNA MER1_type 18 165 -24 2320 97 0 13 chrX 14832839 14833149 -162140991 + AluSx SINE Alu 1 306 -6 1372 242 101 11 chrX 14833388 14833764 -162140376 - MLT1J2 LTR MaLR -2 448 39 3407 118 17 9 chrX 14833912 14834446 -162139694 - L1MA2 LINE L1 -34 6270 5733 183 269 103 39 chrX 14834447 14834525 -162139615 + L2 LINE L2 3212 3294 -19 486 234 170 4 chrX 14834917 14835073 -162139067 - MIR SINE MIR -63 145 19 6259 77 13 3 chrX 14835262 14836111 -162138029 - L1PB2 LINE L1 -2 6149 5293 682 219 56 0 chrX 14836434 14836594 -162137546 - MER63B DNA MER1_type -267 169 1 581 256 147 0 chrX 14837058 14837214 -162136926 + MER5A DNA MER1_type 11 189 0 987 186 38 6 chrX 14837283 14837466 -162136674 - MER5A DNA MER1_type 0 189 1 329 314 124 7 chrX 14837578 14837731 -162136409 + MIR SINE MIR 32 202 -60 790 130 0 0 chrX 14837771 14837886 -162136254 - MER46A DNA MER2_type -4 232 118 1906 143 3 29 chrX 14838438 14838746 -162135394 + AluJb SINE Alu 1 300 -12 485 299 86 25 chrX 14838775 14838847 -162135293 + MIR SINE MIR 7 73 -189 745 184 77 18 chrX 14838847 14839015 -162135125 - MER5B DNA MER1_type 0 178 1 485 299 86 25 chrX 14839015 14839139 -162135001 + MIR SINE MIR 73 215 -47 326 324 147 15 chrX 14839718 14839854 -162134286 + L2 LINE L2 3118 3271 -1 290 328 41 25 chrX 14839932 14840054 -162134086 + L2 LINE L2 3138 3261 -11 1123 227 152 86 chrX 14840161 14840269 -162133871 + Charlie7 DNA MER1_type 1 100 -2512 1404 120 0 10 chrX 14840269 14840469 -162133671 + L1PB3 LINE L1 5957 6154 0 1123 227 152 86 chrX 14840469 14840618 -162133522 + Charlie7 DNA MER1_type 100 238 -2374 2239 93 0 3 chrX 14840618 14840909 -162133231 + AluSx SINE Alu 10 299 -13 1123 227 152 86 chrX 14840909 14841328 -162132812 + Charlie7 DNA MER1_type 238 723 -1889 404 213 55 18 chrX 14841312 14841476 -162132664 + Charlie7 DNA MER1_type 2411 2580 -32 * 325 362 58 0 chrX 14841870 14842008 -162132132 - MIR SINE MIR -69 193 48 3258 184 87 52 chrX 14842087 14842400 -162131740 - MER6 DNA MER2_type 0 865 565 1296 37 0 43 chrX 14842400 14842564 -162131576 - L1PA5 LINE L1 -1 6153 5997 3258 184 87 52 chrX 14842564 14843085 -162131055 - MER6 DNA MER2_type -300 565 1 912 158 0 0 chrX 14844096 14844229 -162129911 - FLAM_C SINE Alu 0 133 1 2163 104 14 10 chrX 14844574 14844871 -162129269 + AluSx SINE Alu 1 298 -14 480 18 0 0 chrX 14844955 14845012 -162129128 + (TG)n Simple_repeat Simple_repeat 2 58 0 629 313 52 9 chrX 14845029 14845240 -162128900 + L3b LINE CR1 1270 1489 -94 2184 138 0 0 chrX 14845887 14846199 -162127941 - AluSx SINE Alu 0 312 1 1029 252 28 17 chrX 14846625 14846915 -162127225 - L2 LINE L2 -1863 1451 1159 5257 148 33 48 chrX 14846935 14846995 -162127145 - L1MA9 LINE L1 0 6312 6253 2191 102 0 10 chrX 14846995 14847288 -162126852 + AluSx SINE Alu 1 290 -22 5257 148 33 48 chrX 14847288 14848269 -162125871 - L1MA9 LINE L1 -59 6253 5287 5256 89 3 1 chrX 14848631 14849290 -162124850 + PABL_A LTR ERV1 1 660 0 495 257 46 63 chrX 14850070 14850245 -162123895 - MER5A DNA MER1_type -7 182 11 234 0 0 0 chrX 14850289 14850315 -162123825 + (A)n Simple_repeat Simple_repeat 1 26 0 670 72 0 0 chrX 14851016 14851099 -162123041 - AluSg/x SINE Alu -22 290 208 245 151 0 109 chrX 14851100 14851155 -162122985 - Alu SINE Alu -263 37 1 24 0 0 0 chrX 14851502 14851526 -162122614 + AT_rich Low_complexity Low_complexity 1 24 0 2095 141 0 13 chrX 14851534 14851846 -162122294 - AluSx SINE Alu -4 308 1 693 294 42 5 chrX 14852037 14852251 -162121889 - MIR SINE MIR 0 262 41 21 0 0 0 chrX 14852475 14852496 -162121644 + AT_rich Low_complexity Low_complexity 1 21 0 2261 131 117 65 chrX 14853066 14853509 -162120631 - MER31B LTR ERV1 0 466 1 24 0 0 0 chrX 14854370 14854394 -162119746 + AT_rich Low_complexity Low_complexity 1 24 0 196 275 163 25 chrX 14854450 14854530 -162119610 + MIR SINE MIR 61 151 -57 1302 229 12 102 chrX 14854603 14854934 -162119206 - MLT1H LTR MaLR -146 403 113 1973 136 3 0 chrX 14854934 14855228 -162118912 - AluJb SINE Alu -7 305 11 1302 229 12 102 chrX 14855228 14855298 -162118842 - MLT1H LTR MaLR -436 113 38 389 292 9 0 chrX 14855330 14855443 -162118697 + MIR SINE MIR 138 251 -11 2418 88 0 0 chrX 14855772 14856079 -162118061 - AluY SINE Alu -4 307 1 21 89 0 0 chrX 14857008 14857064 -162117076 + AT_rich Low_complexity Low_complexity 1 56 0 201 138 0 0 chrX 14857418 14857447 -162116693 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2403 91 0 0 chrX 14858813 14859120 -162115020 - AluSx SINE Alu -5 307 1 2143 105 7 20 chrX 14860005 14860311 -162113829 - AluSx SINE Alu -10 302 1 2521 194 29 45 chrX 14860762 14861320 -162112820 - MER44D DNA MER2_type -1 604 1 286 276 80 120 chrX 14861399 14861925 -162112215 + L2 LINE L2 1366 1870 -1444 2225 108 0 29 chrX 14862206 14862521 -162111619 + AluSx SINE Alu 1 306 -6 348 278 23 68 chrX 14862736 14862837 -162111303 + MIR3 SINE MIR 59 154 -54 610 162 19 199 chrX 14862837 14862991 -162111149 + MER5B DNA MER1_type 2 108 -70 2270 104 0 3 chrX 14862991 14863289 -162110851 - AluSx SINE Alu -15 297 1 610 162 19 199 chrX 14863289 14863350 -162110790 + MER5B DNA MER1_type 108 178 0 348 278 23 68 chrX 14863350 14863381 -162110759 + MIR3 SINE MIR 154 185 -23 1844 150 13 38 chrX 14864042 14864356 -162109784 - AluJo SINE Alu -6 306 1 1974 158 3 6 chrX 14864823 14865134 -162109006 - AluJb SINE Alu -2 310 1 979 126 0 0 chrX 14865134 14865269 -162108871 - AluJb SINE Alu -177 135 1 2179 102 0 7 chrX 14866257 14866541 -162107599 + AluSx SINE Alu 1 282 -30 210 312 45 52 chrX 14866699 14866853 -162107287 - MER5A DNA MER1_type -23 166 14 610 232 140 0 chrX 14869561 14869725 -162104415 + MER5A DNA MER1_type 3 189 0 613 256 63 5 chrX 14869729 14870136 -162104004 + LTR16C LTR ERVL 42 491 0 755 309 21 4 chrX 14870948 14871184 -162102956 + MIR SINE MIR 3 242 -20 966 167 0 0 chrX 14871431 14871581 -162102559 - FRAM SINE Alu -19 157 8 829 144 7 22 chrX 14871651 14871790 -162102350 - FLAM_C SINE Alu -6 137 1 1022 203 6 0 chrX 14871898 14872075 -162102065 - MER5A DNA MER1_type -6 183 6 381 374 104 14 chrX 14872162 14872418 -162101722 - L3 LINE CR1 -67 1510 1224 2301 119 0 0 chrX 14872418 14872730 -162101410 - AluSx SINE Alu 0 312 1 381 374 104 14 chrX 14872730 14872762 -162101378 - L3 LINE CR1 -353 1224 1196 964 233 5 5 chrX 14872803 14873013 -162101127 - MIR SINE MIR -44 218 9 958 205 22 0 chrX 14873013 14873198 -162100942 + MER5A DNA MER1_type 1 189 0 707 272 47 93 chrX 14873211 14873619 -162100521 - L3 LINE CR1 -428 1149 761 481 257 112 76 chrX 14873661 14873917 -162100223 - L1ME4a LINE L1 -22 6099 5819 2234 92 0 3 chrX 14873917 14874200 -162099940 + AluSx SINE Alu 1 282 -30 481 257 112 76 chrX 14874200 14874390 -162099750 - L1ME4a LINE L1 -302 5819 5637 346 342 80 5 chrX 14874614 14874801 -162099339 - L3 LINE CR1 -979 598 398 421 98 0 0 chrX 14875071 14875132 -162099008 - L1MB5 LINE L1 0 6174 6114 1635 130 8 4 chrX 14875133 14875386 -162098754 + L1MA4A LINE L1 6048 6301 -2 1737 174 16 6 chrX 14875390 14875707 -162098433 - L1MB5 LINE L1 -46 6128 5809 406 272 160 30 chrX 14875974 14876143 -162097997 + MIR SINE MIR 56 246 -16 1215 231 56 92 chrX 14876307 14877115 -162097025 - L1MC5 LINE L1 -25 7936 7252 774 148 55 82 chrX 14877139 14877277 -162096863 + MER5B DNA MER1_type 1 134 -44 2143 125 0 16 chrX 14877277 14877581 -162096559 + AluSx SINE Alu 1 299 -13 774 148 55 82 chrX 14877581 14877625 -162096515 + MER5B DNA MER1_type 134 178 0 1158 201 55 65 chrX 14877636 14878070 -162096070 - L1MC5 LINE L1 -733 7228 6799 2264 126 0 0 chrX 14878485 14878788 -162095352 + AluSx SINE Alu 3 306 -1 198 0 0 0 chrX 14878788 14878810 -162095330 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 826 208 128 42 chrX 14879962 14880290 -162093850 - MLT1H1 LTR MaLR 0 555 185 2425 133 27 27 chrX 14880301 14880715 -162093425 - L1MA7 LINE L1 -9 6282 5869 2342 63 3 30 chrX 14881413 14881714 -162092426 + AluSx SINE Alu 1 293 -19 26 0 0 0 chrX 14882074 14882100 -162092040 + AT_rich Low_complexity Low_complexity 1 26 0 248 152 22 0 chrX 14882100 14882146 -162091994 - MER5B DNA MER1_type -128 50 4 538 207 171 55 chrX 14882160 14882324 -162091816 - MER5A DNA MER1_type 0 189 7 964 233 15 5 chrX 14882331 14882537 -162091603 - MER58A DNA MER1_type 0 224 17 301 325 0 0 chrX 14882531 14882608 -162091532 - MER58A DNA MER1_type -25 82 6 * 26 50 0 0 chrX 14883986 14884026 -162090114 + AT_rich Low_complexity Low_complexity 1 40 0 443 305 30 64 chrX 14884051 14884284 -162089856 + MIR SINE MIR 21 245 -17 978 256 52 21 chrX 14884527 14884816 -162089324 + L1ME3 LINE L1 5834 6131 -31 1993 131 28 0 chrX 14884942 14885232 -162088908 - AluJo SINE Alu -14 298 1 21 0 0 0 chrX 14886071 14886092 -162088048 + AT_rich Low_complexity Low_complexity 1 21 0 258 98 0 0 chrX 14886096 14886137 -162088003 + L1MA3 LINE L1 6265 6305 0 526 294 5 72 chrX 14886352 14886388 -162087752 - MER5A DNA MER1_type -7 182 145 1318 167 19 9 chrX 14886388 14886604 -162087536 + MER20 DNA MER1_type 2 219 0 526 294 5 72 chrX 14886604 14886761 -162087379 - MER5A DNA MER1_type -44 145 2 2099 123 0 0 chrX 14886876 14887160 -162086980 - AluSx SINE Alu -28 284 1 30 45 0 0 chrX 14887656 14887700 -162086440 + AT_rich Low_complexity Low_complexity 1 44 0 752 192 27 20 chrX 14887804 14887950 -162086190 - MER58A DNA MER1_type -1 223 77 360 250 132 0 chrX 14887968 14888104 -162086036 - MER34 LTR ERV1 -14 528 375 250 223 82 52 chrX 14888319 14888464 -162085676 - MER34B LTR ERV1 -434 131 10 344 149 119 30 chrX 14888465 14888532 -162085608 - MER58A DNA MER1_type -34 73 1 2128 128 0 13 chrX 14888819 14889131 -162085009 - AluSx SINE Alu -4 308 1 836 176 0 0 chrX 14889158 14889289 -162084851 + AluSq/x SINE Alu 1 131 -182 183 361 16 0 chrX 14891118 14891179 -162082961 - L2 LINE L2 -21 3292 3231 412 276 0 9 chrX 14891205 14891310 -162082830 + MER58B DNA MER1_type 4 107 -234 835 188 14 0 chrX 14891313 14891441 -162082699 + BC200 scRNA scRNA 2 134 -66 225 0 0 0 chrX 14891441 14891466 -162082674 + (CAA)n Simple_repeat Simple_repeat 2 26 0 835 188 14 0 chrX 14891466 14891481 -162082659 + BC200 scRNA scRNA 134 147 -53 1202 156 34 30 chrX 14891494 14891731 -162082409 + MER58B DNA MER1_type 104 341 0 258 192 0 0 chrX 14891820 14891872 -162082268 - MIR SINE MIR -114 148 97 2728 71 21 63 chrX 14892031 14892215 -162081925 - THE1B LTR MaLR 0 364 203 2346 103 3 3 chrX 14892215 14892526 -162081614 + AluSq SINE Alu 1 311 -2 2728 71 21 63 chrX 14892526 14892721 -162081419 - THE1B LTR MaLR -161 203 1 2109 119 7 14 chrX 14892800 14893095 -162081045 + AluSx SINE Alu 1 293 -19 1003 170 12 0 chrX 14893225 14893390 -162080750 + AluSg/x SINE Alu 132 298 -12 224 289 58 39 chrX 14894488 14894592 -162079548 - MIR SINE MIR -4 258 153 489 275 71 87 chrX 14894637 14894900 -162079240 - MLT1J LTR MaLR -7 504 238 1159 148 81 34 chrX 14894900 14895109 -162079031 + MER20 DNA MER1_type 1 219 0 489 275 71 87 chrX 14895109 14895261 -162078879 - MLT1J LTR MaLR -273 238 95 243 0 0 0 chrX 14895261 14895288 -162078852 + (TTG)n Simple_repeat Simple_repeat 1 27 0 489 275 71 87 chrX 14895288 14895376 -162078764 - MLT1J LTR MaLR -416 95 7 198 269 0 19 chrX 14895382 14895434 -162078706 - MIR SINE MIR -150 112 62 337 192 0 14 chrX 14895801 14895874 -162078266 - LTR33A LTR ERVL -8 515 444 200 125 50 0 chrX 14896592 14896632 -162077508 + T-rich Low_complexity Low_complexity 2 43 0 730 284 63 8 chrX 14897176 14897415 -162076725 - LTR16A1 LTR ERVL -1 456 205 1143 196 9 13 chrX 14897762 14897987 -162076153 - MER58A DNA MER1_type 0 224 1 250 426 33 15 chrX 14898128 14898400 -162075740 + L2 LINE L2 2638 2914 -400 5070 136 31 57 chrX 14898479 14899428 -162074712 - L1MA8 LINE L1 -27 6264 5334 2037 146 0 16 chrX 14899428 14899743 -162074397 - AluJo SINE Alu -2 310 1 5070 136 31 57 chrX 14899743 14899879 -162074261 - L1MA8 LINE L1 -957 5334 5196 237 319 138 9 chrX 14899880 14899996 -162074144 + L2 LINE L2 2957 3087 -185 209 222 0 0 chrX 14900129 14900165 -162073975 + L2 LINE L2 3219 3254 -18 335 339 28 50 chrX 14901362 14901542 -162072598 - MIR SINE MIR -50 212 37 649 270 26 26 chrX 14901678 14901904 -162072236 + MIR SINE MIR 13 238 -24 308 156 31 0 chrX 14902054 14902118 -162072022 - LTR33A LTR ERVL -16 507 442 852 302 36 0 chrX 14902279 14902527 -162071613 + MIR SINE MIR 1 257 -5 1702 118 42 64 chrX 14903025 14903382 -162070758 - THE1C LTR MaLR 0 375 27 428 231 180 55 chrX 14904270 14904746 -162069394 - LTR33A LTR ERVL -20 503 2 266 0 0 29 chrX 14904960 14904995 -162069145 + (TG)n Simple_repeat Simple_repeat 2 35 0 605 62 0 0 chrX 14905449 14905529 -162068611 + MADE1 DNA Mariner 1 80 0 22 35 0 0 chrX 14906380 14906409 -162067731 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chrX 14906449 14906477 -162067663 + AT_rich Low_complexity Low_complexity 1 28 0 2297 106 0 7 chrX 14907297 14907599 -162066541 - AluSx SINE Alu -12 300 1 21 36 0 0 chrX 14907739 14907767 -162066373 + AT_rich Low_complexity Low_complexity 1 28 0 2159 121 10 0 chrX 14908054 14908351 -162065789 + AluSx SINE Alu 1 300 -12 282 56 0 0 chrX 14908351 14908387 -162065753 + (TA)n Simple_repeat Simple_repeat 2 37 0 273 215 84 9 chrX 14908743 14908850 -162065290 - L1ME LINE L1 -289 5877 5763 376 237 102 17 chrX 14910929 14911047 -162063093 - MIR SINE MIR -2 260 133 235 119 0 0 chrX 14911176 14911218 -162062922 - L1MDb LINE L1 -5085 1562 1521 27 29 0 0 chrX 14911238 14911272 -162062868 + AT_rich Low_complexity Low_complexity 1 34 0 2448 72 17 20 chrX 14911276 14911622 -162062518 - L1PB1 LINE L1 -1 6150 5806 613 223 79 66 chrX 14911622 14911940 -162062200 - L1MDb LINE L1 -5214 1332 1011 290 219 13 139 chrX 14912106 14912343 -162061797 - L1MDb LINE L1 -5667 875 669 6017 125 24 3 chrX 14912443 14914284 -162059856 - L1MA3 LINE L1 -10 7714 5308 1811 158 41 12 chrX 14914282 14914541 -162059599 - L1MA3 LINE L1 -7203 362 89 * 270 0 0 0 chrX 14914541 14914571 -162059569 + (TG)n Simple_repeat Simple_repeat 1 30 0 1811 158 41 12 chrX 14914571 14914653 -162059487 - L1MA3 LINE L1 -7476 89 11 352 330 50 28 chrX 14914777 14914995 -162059145 - L1MDb LINE L1 -6304 238 16 246 229 0 136 chrX 14917350 14917468 -162056672 - MER102b DNA MER1_type -8 333 232 822 242 142 96 chrX 14917586 14917705 -162056435 - MLT1F1 LTR MaLR -8 559 447 2266 107 3 0 chrX 14917705 14918004 -162056136 - AluSx SINE Alu -12 300 1 822 242 142 96 chrX 14918004 14918418 -162055722 - MLT1F1 LTR MaLR -120 447 1 2852 198 19 3 chrX 14918995 14919585 -162054555 - MLT1E2 LTR MaLR 0 626 28 311 218 264 0 chrX 14919887 14919997 -162054143 + MIR SINE MIR 119 257 -5 455 210 0 0 chrX 14920227 14920308 -162053832 - FRAM/FAM SINE Alu -97 88 8 588 214 15 8 chrX 14920403 14920534 -162053606 + MER58D DNA MER1_type 1 132 -254 5163 64 16 30 chrX 14920566 14921302 -162052838 - L1MA2 LINE L1 -3 6301 5576 497 129 0 11 chrX 14921310 14921403 -162052737 + MER58 DNA MER1_type 2159 2250 -170 874 157 0 0 chrX 14921403 14921537 -162052603 + FLAM_C SINE Alu 1 134 -9 797 128 104 6 chrX 14921538 14921702 -162052438 + MER58 DNA MER1_type 2241 2420 0 346 219 88 53 chrX 14921750 14921864 -162052276 - MIR3 SINE MIR -25 183 66 25 0 0 28 chrX 14922950 14922970 -162051170 + AT_rich Low_complexity Low_complexity 1 21 -14 1986 144 0 26 chrX 14922970 14923276 -162050864 - AluSx SINE Alu -14 298 1 25 0 0 28 chrX 14923276 14923291 -162050849 + AT_rich Low_complexity Low_complexity 21 35 0 516 268 106 62 chrX 14923296 14923480 -162050660 + L1ME3 LINE L1 5459 5633 -533 803 231 33 6 chrX 14923480 14923662 -162050478 + MER5A DNA MER1_type 3 189 0 516 268 106 62 chrX 14923662 14923865 -162050275 + L1ME3 LINE L1 5633 5863 -303 614 198 23 52 chrX 14924040 14924212 -162049928 + L2 LINE L2 2061 2227 -1087 1363 252 61 32 chrX 14924230 14924706 -162049434 + L2 LINE L2 2574 3061 -252 33 43 0 0 chrX 14925099 14925146 -162048994 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chrX 14925395 14925424 -162048716 + AT_rich Low_complexity Low_complexity 1 29 0 517 295 107 17 chrX 14925447 14925896 -162048244 - L1ME3 LINE L1 -211 5951 5452 228 313 68 20 chrX 14926987 14927134 -162047006 + MIR SINE MIR 77 230 -32 2291 95 0 3 chrX 14927260 14927556 -162046584 + AluSx SINE Alu 1 295 -17 800 213 101 41 chrX 14927576 14927843 -162046297 + L1ME3 LINE L1 5836 6123 -39 2013 151 0 7 chrX 14927843 14928142 -162045998 + AluJo SINE Alu 1 297 -15 800 213 101 41 chrX 14928142 14928177 -162045963 + L1ME3 LINE L1 6123 6154 -8 903 153 77 0 chrX 14928294 14928464 -162045676 - MER58A DNA MER1_type 0 224 42 187 342 13 13 chrX 14929083 14929159 -162044981 - MIR3 SINE MIR -21 187 112 1887 223 95 6 chrX 14929217 14929692 -162044448 + MLT1F LTR MaLR 26 542 0 902 240 20 0 chrX 14929747 14929943 -162044197 + MIR SINE MIR 4 203 -59 34 72 0 0 chrX 14929967 14930036 -162044104 + AT_rich Low_complexity Low_complexity 1 69 0 290 139 73 0 chrX 14930036 14930173 -162043967 + (TA)n Simple_repeat Simple_repeat 1 147 0 305 309 64 0 chrX 14930189 14930283 -162043857 + MIR SINE MIR 161 260 -2 184 287 55 118 chrX 14930282 14930648 -162043492 - L2 LINE L2 -92 3180 2838 * 2823 85 3 0 chrX 14930746 14931109 -162043031 - THE1B LTR MaLR 0 364 1 2993 144 48 6 chrX 14931319 14931820 -162042320 + Tigger7 DNA MER2_type 1 522 -1965 443 165 0 25 chrX 14931841 14931920 -162042220 + Tigger7 DNA MER2_type 2411 2487 0 710 284 69 9 chrX 14932015 14932233 -162041907 - MIR SINE MIR -31 231 1 2398 106 0 0 chrX 14932275 14932587 -162041553 + AluSx SINE Alu 1 312 0 2043 124 0 26 chrX 14933125 14933431 -162040709 - AluSx SINE Alu -12 300 3 596 270 93 29 chrX 14934114 14934458 -162039682 - L1ME4a LINE L1 -233 5888 5523 635 192 134 35 chrX 14934804 14934976 -162039164 + MER5A DNA MER1_type 1 189 0 596 207 0 0 chrX 14935029 14935140 -162039000 - MER81 DNA DNA -2 112 2 588 204 62 51 chrX 14935869 14936045 -162038095 - MER5B DNA MER1_type 0 178 1 426 224 7 30 chrX 14936064 14936211 -162037929 - MER5A DNA MER1_type 0 189 4 233 253 242 10 chrX 14936462 14936561 -162037579 + L2 LINE L2 3138 3259 -13 227 129 65 0 chrX 14937589 14937651 -162036489 + (TTA)n Simple_repeat Simple_repeat 2 67 0 676 301 84 35 chrX 14938303 14938649 -162035491 - L2 LINE L2 -5 3308 2946 703 120 7 14 chrX 14939693 14939835 -162034305 - Charlie5 DNA MER1_type -121 2491 2351 1396 56 0 0 chrX 14939835 14940014 -162034126 - L1PA6 LINE L1 0 6154 5976 429 237 84 32 chrX 14940297 14940487 -162033653 - L1MC4a LINE L1 -1914 5894 5695 940 177 44 0 chrX 14940516 14940697 -162033443 + MER5A DNA MER1_type 1 189 0 342 287 104 18 chrX 14941305 14941469 -162032671 - L1MC4a LINE L1 -1829 5979 5802 515 93 6 74 chrX 14941607 14941769 -162032371 + (TCCC)n Simple_repeat Simple_repeat 3 153 0 198 156 0 0 chrX 14941889 14941934 -162032206 + A-rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chrX 14942770 14942803 -162031337 + AT_rich Low_complexity Low_complexity 1 33 0 5326 191 19 9 chrX 14943155 14943637 -162030503 - MER45B DNA AcHobo -545 1036 560 2497 113 23 0 chrX 14943637 14943991 -162030149 - THE1B LTR MaLR 0 364 3 5326 191 19 9 chrX 14943991 14944533 -162029607 - MER45B DNA AcHobo -1021 560 2 191 363 148 13 chrX 14945222 14945539 -162028601 - L2 LINE L2 -342 2972 2613 581 202 8 0 chrX 14945808 14945932 -162028208 - LTR16C LTR ERVL -8 483 359 2198 174 68 33 chrX 14945949 14946431 -162027709 - MLT1D LTR MaLR -6 499 1 1002 246 108 25 chrX 14946432 14946757 -162027383 - LTR16C LTR ERVL -139 352 1 216 295 0 13 chrX 14946909 14946987 -162027153 + MIR3 SINE MIR 132 208 0 324 286 140 35 chrX 14947318 14947489 -162026651 + L3 LINE CR1 985 1173 -404 432 90 0 13 chrX 14947640 14947718 -162026422 - L1MA1 LINE L1 -252 6050 5974 841 314 64 37 chrX 14947762 14948170 -162025970 + L3 LINE CR1 1158 1576 -1 2255 84 3 20 chrX 14948426 14948768 -162025372 - AluSp SINE Alu 0 313 1 221 281 62 42 chrX 14949704 14949800 -162024340 - L2 LINE L2 -47 3266 3169 603 247 152 64 chrX 14949845 14950376 -162023764 - MLT1H LTR MaLR -15 534 1 365 267 0 29 chrX 14950671 14950776 -162023364 - MIR3 SINE MIR -7 201 100 417 263 20 0 chrX 14951128 14951227 -162022913 + U4 snRNA snRNA 3 103 -42 2258 86 0 0 chrX 14951559 14951865 -162022275 - AluSc SINE Alu 0 306 1 225 247 41 41 chrX 14952575 14952648 -162021492 + L2 LINE L2 3234 3306 -7 496 241 129 0 chrX 14953766 14953882 -162020258 + MER5A DNA MER1_type 1 131 -58 792 256 88 17 chrX 14954293 14954531 -162019609 + MIR SINE MIR 8 262 0 270 247 152 124 chrX 14954716 14954894 -162019246 - MIR SINE MIR -78 184 2 1609 177 47 14 chrX 14955411 14955688 -162018452 + AluJo SINE Alu 1 286 -26 260 121 69 69 chrX 14955802 14955860 -162018280 + MIR SINE MIR 7 64 -198 551 226 244 68 chrX 14955893 14955943 -162018197 - LTR16A1 LTR ERVL -9 448 408 2038 122 0 0 chrX 14955943 14956231 -162017909 - AluSx SINE Alu -24 288 1 551 226 244 68 chrX 14956231 14956561 -162017579 - LTR16A1 LTR ERVL -49 408 1 192 202 111 101 chrX 14956561 14956660 -162017480 + MIR SINE MIR 109 208 -54 1826 166 52 75 chrX 14956831 14957272 -162016868 - MLT1D LTR MaLR 0 505 75 450 136 0 0 chrX 14957342 14957408 -162016732 - MLT1D LTR MaLR -431 74 9 1392 202 26 16 chrX 14957431 14957738 -162016402 - MER58B DNA MER1_type -16 325 16 29120 99 16 41 chrX 14960689 14967249 -162006891 - L1PA7 LINE L1 -13 6456 11 1760 169 39 11 chrX 14967308 14967663 -162006477 - MLT1A1 LTR MaLR 0 365 1 1126 206 37 0 chrX 14968504 14968718 -162005422 + MER58A DNA MER1_type 3 224 0 293 130 270 70 chrX 14969822 14969922 -162004218 - MLT1I LTR MaLR -6 403 284 864 72 65 72 chrX 14969952 14970090 -162004050 + AluSx SINE Alu 1 137 -176 31460 104 13 37 chrX 14970091 14976388 -161997752 + L1PA7 LINE L1 12 6147 -7 1342 113 0 0 chrX 14976388 14976573 -161997567 + AluSx SINE Alu 121 305 -7 494 242 0 53 chrX 14976710 14976842 -161997298 - MLT1I LTR MaLR -236 173 49 977 218 97 7 chrX 14979212 14979501 -161994639 + L1ME3 LINE L1 5837 6151 -11 180 299 60 0 chrX 14979642 14979709 -161994431 + MIR SINE MIR 94 164 -98 288 0 0 0 chrX 14981157 14981189 -161992951 + (TG)n Simple_repeat Simple_repeat 2 33 0 321 26 0 0 chrX 14981404 14981442 -161992698 + (TA)n Simple_repeat Simple_repeat 2 39 0 208 373 90 22 chrX 14983663 14983797 -161990343 - L2 LINE L2 -2 3270 3128 2660 43 0 0 chrX 14984268 14984568 -161989572 + AluY SINE Alu 1 300 -11 889 251 136 18 chrX 14984938 14985269 -161988871 - MLT1J2 LTR MaLR -51 399 30 226 290 198 37 chrX 14986368 14986530 -161987610 - MIR SINE MIR -14 248 61 623 275 79 5 chrX 14986763 14986952 -161987188 - MIR SINE MIR -12 250 48 4126 147 29 23 chrX 14987234 14987693 -161986447 - L1MA8 LINE L1 -3 6288 5833 216 0 0 0 chrX 14987693 14987717 -161986423 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2494 21 0 0 chrX 14987717 14988000 -161986140 - AluY SINE Alu -28 283 1 4126 147 29 23 chrX 14988000 14988331 -161985809 - L1MA8 LINE L1 -457 5834 5492 21 0 0 0 chrX 14988569 14988590 -161985550 + AT_rich Low_complexity Low_complexity 1 21 0 325 311 132 55 chrX 14989356 14989591 -161984549 + L2 LINE L2 2720 2972 -342 219 186 0 0 chrX 14989698 14989741 -161984399 + CT-rich Low_complexity Low_complexity 4 46 0 1742 182 0 22 chrX 14989797 14990110 -161984030 + AluJo SINE Alu 1 306 -6 1510 275 104 10 chrX 14990221 14990914 -161983226 - L2 LINE L2 -1 3312 2556 2341 91 3 0 chrX 14991114 14991411 -161982729 - AluSx SINE Alu -13 299 2 376 291 34 30 chrX 14991421 14991686 -161982454 - L1ME LINE L1 -301 5820 5555 1783 152 11 4 chrX 14991910 14992186 -161981954 + AluJb SINE Alu 1 278 -34 207 100 0 0 chrX 14992186 14992216 -161981924 + (TAAG)n Simple_repeat Simple_repeat 2 31 0 3646 65 4 12 chrX 14992333 14992823 -161981317 + L1PA7 LINE L1 5665 6150 -4 2128 189 123 94 chrX 14993348 14993676 -161980464 + L1ME3A LINE L1 5293 5610 -560 315 194 0 0 chrX 14993676 14993743 -161980397 - MER116 DNA Mariner -13 67 1 2128 189 123 94 chrX 14993743 14994201 -161979939 + L1ME3A LINE L1 5610 6170 0 202 304 27 76 chrX 14994380 14994564 -161979576 - L2 LINE L2 -182 3090 2916 * 308 313 138 27 chrX 14994555 14994926 -161979214 - L2 LINE L2 -359 2955 2544 613 307 4 70 chrX 15195857 15196064 -161778076 - L3 LINE CR1 -370 1207 1017 2025 242 42 44 chrX 15196064 15196658 -161777482 - MLT1E LTR MaLR 0 593 1 613 307 4 70 chrX 15196658 15196694 -161777446 - L3 LINE CR1 -560 1017 980 630 266 85 15 chrX 15196732 15196991 -161777149 + L1MEd LINE L1 563 839 -5280 225 125 0 0 chrX 15197062 15197094 -161777046 + U2 snRNA snRNA 1 32 -156 653 247 42 48 chrX 15197101 15197164 -161776976 + L1MEd LINE L1 900 962 -5157 2405 92 0 3 chrX 15197164 15197470 -161776670 + AluSx SINE Alu 1 305 -7 653 247 42 48 chrX 15197470 15197688 -161776452 + L1MEd LINE L1 962 1181 -4938 1630 143 63 66 chrX 15197688 15197989 -161776151 + AluJo SINE Alu 1 300 -12 653 247 42 48 chrX 15197989 15198042 -161776098 + L1MEd LINE L1 1181 1233 -4886 464 244 108 112 chrX 15198136 15198590 -161775550 + LTR33A LTR ERVL 66 517 -6 313 294 196 8 chrX 15198601 15198856 -161775284 + L1MEd LINE L1 1233 1535 -4594 1857 158 6 19 chrX 15199981 15200297 -161773843 + AluJo SINE Alu 1 312 0 3851 94 39 93 chrX 15200317 15200625 -161773515 + MER4A LTR ERV1 1 324 -340 2180 98 3 49 chrX 15200625 15200951 -161773189 - AluSq SINE Alu -2 311 1 3851 94 39 93 chrX 15200951 15201344 -161772796 + MER4A LTR ERV1 324 664 0 467 249 112 78 chrX 15201368 15201726 -161772414 + MLT1I LTR MaLR 40 409 0 451 146 0 10 chrX 15201843 15201939 -161772201 - L1MA8 LINE L1 -5 6286 6192 28 48 0 0 chrX 15201945 15201987 -161772153 + AT_rich Low_complexity Low_complexity 1 42 0 2119 127 0 3 chrX 15202675 15202975 -161771165 + AluSx SINE Alu 1 299 -13 21 95 0 0 chrX 15203173 15203236 -161770904 + AT_rich Low_complexity Low_complexity 1 63 0 845 187 41 0 chrX 15203792 15203963 -161770177 - MER5B DNA MER1_type 0 178 1 352 180 163 38 chrX 15204087 15204270 -161769870 + L1ME2 LINE L1 5843 6095 -69 192 40 0 0 chrX 15204270 15204295 -161769845 + (TA)n Simple_repeat Simple_repeat 1 25 0 352 180 163 38 chrX 15204295 15204363 -161769777 + L1ME2 LINE L1 6095 6153 -11 481 278 172 0 chrX 15205315 15205466 -161768674 - MER5A DNA MER1_type 0 189 13 377 256 91 8 chrX 15205921 15206042 -161768098 + MIR SINE MIR 77 207 -55 549 242 149 12 chrX 15206048 15206209 -161767931 + MER5A DNA MER1_type 7 189 0 1894 166 0 10 chrX 15206213 15206508 -161767632 + AluJo SINE Alu 1 292 -20 679 132 9 0 chrX 15206596 15206702 -161767438 + FLAM_A SINE Alu 1 107 -35 22 0 0 0 chrX 15207509 15207531 -161766609 + AT_rich Low_complexity Low_complexity 1 22 0 823 161 157 80 chrX 15207549 15207848 -161766292 + MER33 DNA MER1_type 3 324 0 924 207 54 10 chrX 15207855 15208058 -161766082 - MER58C DNA MER1_type 0 215 4 918 214 34 40 chrX 15208769 15208909 -161765231 + L1M4 LINE L1 3081 3220 -2926 1982 119 18 0 chrX 15208909 15209238 -161764902 + AluSx SINE Alu 1 334 0 918 214 34 40 chrX 15209238 15209307 -161764833 + L1M4 LINE L1 3220 3288 -2858 1969 150 0 3 chrX 15209307 15209601 -161764539 + AluJb SINE Alu 1 293 -19 918 214 34 40 chrX 15209601 15209739 -161764401 + L1M4 LINE L1 3288 3428 -2718 26 64 0 0 chrX 15209781 15209828 -161764312 + AT_rich Low_complexity Low_complexity 1 47 0 450 157 0 0 chrX 15210347 15210430 -161763710 + CT-rich Low_complexity Low_complexity 1 83 0 21 36 0 0 chrX 15210542 15210570 -161763570 + AT_rich Low_complexity Low_complexity 1 28 0 371 244 24 0 chrX 15211311 15211393 -161762747 - MIR SINE MIR -116 146 63 2276 81 3 0 chrX 15211430 15211746 -161762394 - AluSp SINE Alu 0 317 1 218 345 112 28 chrX 15211969 15212218 -161761922 - L2 LINE L2 -661 2653 2384 429 304 37 5 chrX 15212984 15213201 -161760939 + L1ME4a LINE L1 5600 5823 -298 2129 98 4 0 chrX 15213214 15213491 -161760649 + AluSq SINE Alu 1 278 -35 1984 78 3 54 chrX 15213491 15213785 -161760355 + AluY SINE Alu 33 311 0 413 45 136 0 chrX 15214098 15214164 -161759976 - L1MC1 LINE L1 0 6333 6259 408 110 110 0 chrX 15214167 15214240 -161759900 - L1MC1 LINE L1 -146 6187 6107 469 284 55 70 chrX 15214624 15214821 -161759319 - MIR SINE MIR -2 260 66 2327 33 39 43 chrX 15214821 15215126 -161759014 + AluY SINE Alu 1 304 -7 469 284 55 70 chrX 15215126 15215185 -161758955 - MIR SINE MIR -196 66 8 237 261 190 22 chrX 15215288 15215472 -161758668 + L1ME4a LINE L1 5794 6008 -113 30 0 0 0 chrX 15215552 15215582 -161758558 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chrX 15218273 15218319 -161755821 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chrX 15218780 15218802 -161755338 + AT_rich Low_complexity Low_complexity 1 22 0 243 132 0 0 chrX 15218989 15219027 -161755113 - MLT2F LTR ERVL -7 656 619 239 265 69 10 chrX 15219211 15219313 -161754827 + HAL1 LINE L1 2253 2360 -147 317 259 86 50 chrX 15219328 15219548 -161754592 + L1MDa LINE L1 2421 2648 -3892 2167 109 0 3 chrX 15220516 15220809 -161753331 - AluSx SINE Alu -20 292 1 1060 45 0 15 chrX 15220809 15220942 -161753198 + AluSg/x SINE Alu 167 297 -15 592 153 17 34 chrX 15223567 15223685 -161750455 + MER20 DNA MER1_type 84 199 -20 1889 170 3 0 chrX 15223685 15223991 -161750149 + AluJb SINE Alu 2 308 -4 869 106 21 42 chrX 15224001 15224143 -161749997 + AluSq/x SINE Alu 1 139 -174 21 36 0 0 chrX 15224244 15224272 -161749868 + AT_rich Low_complexity Low_complexity 1 28 0 557 162 17 34 chrX 15224771 15224888 -161749252 + MER20 DNA MER1_type 85 199 -20 1912 167 3 0 chrX 15224888 15225193 -161748947 + AluJb SINE Alu 2 307 -5 1939 114 10 24 chrX 15225203 15225501 -161748639 + AluSx SINE Alu 1 294 -18 373 276 118 34 chrX 15226233 15226621 -161747519 + L1MC4 LINE L1 5448 5653 -468 860 163 50 19 chrX 15226638 15226798 -161747342 + FRAM SINE Alu 4 168 -8 339 320 129 7 chrX 15227061 15227208 -161746932 - MLT1J LTR MaLR -97 414 250 808 238 9 14 chrX 15227317 15227527 -161746613 + MER63A DNA MER1_type 2 210 0 2424 37 0 20 chrX 15227600 15227900 -161746240 + AluY SINE Alu 1 294 -17 307 221 0 15 chrX 15227925 15227993 -161746147 - L1MCa LINE L1 -4362 2064 1998 * 347 308 0 0 chrX 15227953 15228044 -161746096 + L1MC4 LINE L1 6613 6703 -1339 1904 105 12 53 chrX 15228052 15228375 -161745765 + AluJb SINE Alu 3 312 0 1920 85 4 4 chrX 15229289 15229572 -161744568 - AluSq SINE Alu 0 321 39 1807 167 3 7 chrX 15229616 15229909 -161744231 + AluSx SINE Alu 1 292 -20 1955 145 0 10 chrX 15229945 15230248 -161743892 - AluJb SINE Alu 0 312 13 737 157 0 0 chrX 15231029 15231181 -161742959 - FLAM_C SINE Alu 0 152 1 564 294 116 55 chrX 15231321 15231821 -161742319 + L1M4 LINE L1 4067 4610 -1536 2230 89 40 7 chrX 15231821 15232123 -161742017 + AluSx SINE Alu 1 312 0 564 294 116 55 chrX 15232123 15232207 -161741933 + L1M4 LINE L1 4610 4687 -1459 245 169 13 52 chrX 15232403 15232480 -161741660 + L1M4 LINE L1 4946 5019 -1127 228 143 32 16 chrX 15232481 15232544 -161741596 + L1M4 LINE L1 4967 5030 -1116 2212 99 0 29 chrX 15232702 15233015 -161741125 - AluSg SINE Alu -6 304 1 2052 82 75 0 chrX 15235035 15235314 -161738826 + AluSq SINE Alu 1 300 -13 22 35 0 0 chrX 15236118 15236147 -161737993 + AT_rich Low_complexity Low_complexity 1 29 0 801 230 157 73 chrX 15236448 15237022 -161737118 - L1MC5 LINE L1 -80 7881 7260 703 110 0 0 chrX 15237783 15237883 -161736257 + HY3 scRNA scRNA 1 100 -1 329 209 0 11 chrX 15239025 15239097 -161735043 + (TG)n Simple_repeat Simple_repeat 2 74 -17 2396 69 0 13 chrX 15239097 15239401 -161734739 - AluSx SINE Alu -12 300 1 329 209 0 11 chrX 15239401 15239419 -161734721 + (TG)n Simple_repeat Simple_repeat 74 91 0 250 273 13 39 chrX 15239934 15240011 -161734129 - MIR3 SINE MIR -40 168 94 723 224 97 73 chrX 15240231 15240490 -161733650 + Charlie8 DNA MER1_type 1 265 -2152 181 338 0 15 chrX 15240748 15240816 -161733324 - L2 LINE L2 -79 3193 3127 2235 108 3 7 chrX 15241364 15241669 -161732471 + AluSx SINE Alu 7 310 -2 24 0 0 0 chrX 15241879 15241903 -161732237 + AT_rich Low_complexity Low_complexity 1 24 0 2258 106 0 0 chrX 15242236 15242528 -161731612 + AluSx SINE Alu 1 292 -20 1964 145 54 44 chrX 15244302 15244348 -161729792 - L1MB7 LINE L1 -37 6147 6103 1821 175 3 0 chrX 15244348 15244656 -161729484 - AluJb SINE Alu -3 309 1 1964 145 54 44 chrX 15244656 15245015 -161729125 - L1MB7 LINE L1 -81 6103 5738 2415 78 3 3 chrX 15245023 15245330 -161728810 - AluSq SINE Alu -6 307 1 2285 100 0 0 chrX 15246730 15247030 -161727110 + AluSx SINE Alu 1 300 -12 291 319 129 9 chrX 15249736 15249852 -161724288 + L2 LINE L2 3141 3270 -2 195 42 0 0 chrX 15250864 15250888 -161723252 + (TC)n Simple_repeat Simple_repeat 2 25 0 250 106 21 0 chrX 15251028 15251075 -161723065 - L1MB7 LINE L1 -9 6175 6128 446 279 37 83 chrX 15252076 15252414 -161721726 - L1ME LINE L1 -539 5582 5259 841 185 76 54 chrX 15252416 15252600 -161721540 + MER58A DNA MER1_type 3 190 -34 474 340 54 13 chrX 15252665 15252980 -161721160 - L1ME LINE L1 -882 5264 4937 1219 112 12 6 chrX 15253633 15253802 -161720338 - AluJb SINE Alu -22 290 121 264 30 0 0 chrX 15253802 15253835 -161720305 + (TA)n Simple_repeat Simple_repeat 1 33 0 250 191 0 0 chrX 15253840 15253903 -161720237 - L1MC4 LINE L1 -1339 6703 6641 667 85 23 100 chrX 15253903 15254033 -161720107 - FLAM_C SINE Alu -4 139 20 2508 48 0 16 chrX 15254472 15254785 -161719355 - AluY SINE Alu -3 308 1 314 250 196 0 chrX 15254916 15255064 -161719076 - L1ME LINE L1 -273 5848 5672 246 257 132 7 chrX 15255186 15255330 -161718810 - L1P5 LINE L1 -700 5451 5290 542 158 0 0 chrX 15256437 15256519 -161717621 - L2 LINE L2 -1 3312 3231 269 354 142 0 chrX 15256604 15256731 -161717409 - L2 LINE L2 -554 2760 2616 1866 97 0 0 chrX 15256732 15256969 -161717171 + AluSq SINE Alu 1 237 -76 271 138 15 31 chrX 15456977 15457042 -161517098 + GA-rich Low_complexity Low_complexity 1 64 0 2090 122 7 13 chrX 15457233 15457537 -161516603 - AluJb SINE Alu -10 302 1 1964 145 0 7 chrX 15458467 15458763 -161515377 + AluSx SINE Alu 1 294 -18 483 222 45 37 chrX 15458763 15459006 -161515134 + L1MEd LINE L1 939 1183 -4936 2322 114 0 0 chrX 15459018 15459325 -161514815 + AluSx SINE Alu 1 307 -5 645 169 66 42 chrX 15459325 15459491 -161514649 - L1MC5 LINE L1 -789 7172 7003 338 127 0 32 chrX 15459591 15459654 -161514486 + AluJo SINE Alu 76 136 -166 2415 74 3 3 chrX 15459654 15459963 -161514177 + AluY SINE Alu 1 309 -2 820 170 0 14 chrX 15459977 15460118 -161514022 + FLAM_A SINE Alu 4 142 0 22 35 0 0 chrX 15460162 15460191 -161513949 + AT_rich Low_complexity Low_complexity 1 29 0 2382 93 0 7 chrX 15460191 15460501 -161513639 + AluSc SINE Alu 1 308 -1 1399 212 102 12 chrX 15460515 15460840 -161513300 + LTR16C LTR ERVL 138 491 0 2371 73 0 0 chrX 15461733 15462022 -161512118 + AluY SINE Alu 4 292 -19 889 161 94 0 chrX 15462033 15462182 -161511958 + FAM SINE Alu 1 163 -12 1114 136 20 40 chrX 15462760 15462959 -161511181 - AluJo SINE Alu -117 195 1 2283 115 0 10 chrX 15463534 15463848 -161510292 - AluSx SINE Alu -1 311 1 287 260 104 10 chrX 15464724 15464820 -161509320 - L2 LINE L2 -12 3301 3197 2189 133 3 0 chrX 15464893 15465194 -161508946 + AluSg SINE Alu 1 302 -8 2049 133 3 13 chrX 15465644 15465946 -161508194 + AluSx SINE Alu 1 299 -13 966 212 39 80 chrX 15465964 15466327 -161507813 + L1MC4 LINE L1 7695 8042 0 2626 52 3 0 chrX 15466866 15467171 -161506969 - AluY SINE Alu -5 306 1 291 258 65 11 chrX 15467171 15467264 -161506876 - MER5A DNA MER1_type -33 156 59 447 177 93 13 chrX 15467567 15467722 -161506418 + L1ME3A LINE L1 5944 6151 -19 2189 131 17 12 chrX 15467724 15468068 -161506072 + MER47A DNA MER2_type 21 366 0 387 332 107 21 chrX 15468145 15468434 -161505706 + L2 LINE L2 1871 2202 -1112 2242 119 0 0 chrX 15468434 15468737 -161505403 - AluSx SINE Alu -9 303 1 387 332 107 21 chrX 15468737 15468830 -161505310 + L2 LINE L2 2202 2286 -1028 203 181 7 43 chrX 15469021 15469159 -161504981 + (TA)n Simple_repeat Simple_repeat 1 133 0 1143 121 6 12 chrX 15469300 15469466 -161504674 - AluSq SINE Alu -17 296 132 1974 94 0 22 chrX 15469467 15469743 -161504397 - AluSx SINE Alu -16 296 27 1955 84 4 0 chrX 15469743 15469994 -161504146 + AluY SINE Alu 45 296 -15 295 54 0 0 chrX 15469994 15470031 -161504109 - AluSx SINE Alu -266 37 1 2149 70 23 50 chrX 15470348 15470670 -161503470 + AluY SINE Alu 1 311 0 2288 112 0 10 chrX 15470772 15471084 -161503056 - AluSq SINE Alu -4 309 1 2169 94 57 13 chrX 15471341 15471640 -161502500 - AluSx SINE Alu 0 312 1 2173 116 7 3 chrX 15471726 15472029 -161502111 + AluSq SINE Alu 1 304 -9 2082 93 31 10 chrX 15472075 15472364 -161501776 + AluSx SINE Alu 1 295 -17 3594 70 36 0 chrX 15472406 15472880 -161501260 + L1PA8 LINE L1 5680 6170 -2 21 0 0 0 chrX 15473079 15473100 -161501040 + AT_rich Low_complexity Low_complexity 1 21 0 2319 96 0 0 chrX 15473200 15473492 -161500648 + AluSg SINE Alu 1 292 -18 275 200 17 0 chrX 15473496 15473556 -161500584 + L1ME4a LINE L1 5994 6054 -67 330 234 62 125 chrX 15473597 15473789 -161500351 + MARNA DNA Mariner 345 524 -62 1643 169 4 11 chrX 15473878 15474151 -161499989 - AluJo SINE Alu -39 273 3 2075 118 0 23 chrX 15474917 15475223 -161498917 + AluJb SINE Alu 1 299 -13 2119 140 0 13 chrX 15475306 15475614 -161498526 - AluJb SINE Alu -8 304 1 228 268 55 87 chrX 15477486 15477603 -161496537 - MIR SINE MIR -55 207 97 2084 133 0 3 chrX 15477603 15477911 -161496229 + AluSx SINE Alu 1 307 -5 228 268 55 87 chrX 15477911 15477976 -161496164 - MIR SINE MIR -165 97 31 510 256 58 0 chrX 15478912 15479084 -161495056 - MIR SINE MIR 0 262 81 207 267 164 26 chrX 15479116 15479232 -161494908 + L2 LINE L2 2917 3048 -224 676 173 23 8 chrX 15479290 15479423 -161494717 - MER5B DNA MER1_type -43 135 1 189 247 52 26 chrX 15479646 15479723 -161494417 + L2 LINE L2 3234 3312 -1 2239 101 0 7 chrX 15480299 15480597 -161493543 + AluSg SINE Alu 1 296 -14 181 138 0 0 chrX 15480609 15480638 -161493502 + MER5A DNA MER1_type 78 106 -83 616 216 135 18 chrX 15480680 15480902 -161493238 - MER20B DNA MER1_type 0 783 536 481 229 209 46 chrX 15481357 15481716 -161492424 + MLT1L LTR MaLR 8 307 -308 2514 57 7 0 chrX 15481716 15482016 -161492124 - AluY SINE Alu -9 302 1 481 229 209 46 chrX 15482016 15482131 -161492009 + MLT1L LTR MaLR 307 608 -7 2188 83 3 14 chrX 15482317 15482641 -161491499 + AluSg SINE Alu 1 321 0 229 302 58 0 chrX 15482717 15482803 -161491337 + L2 LINE L2 2969 3059 -213 1564 170 84 33 chrX 15482803 15483162 -161490978 - Charlie4a DNA MER1_type 0 508 132 340 184 113 71 chrX 15483304 15483517 -161490623 + MLT1H LTR MaLR 232 549 0 491 200 27 127 chrX 15483517 15483667 -161490473 - Charlie4a DNA MER1_type -373 135 1 183 367 0 25 chrX 15483752 15483831 -161490309 + L2 LINE L2 3234 3310 -3 191 293 0 0 chrX 15483843 15483884 -161490256 + L2 LINE L2 3137 3177 -95 617 181 156 0 chrX 15483894 15484054 -161490086 - MIR SINE MIR -34 228 44 604 293 76 0 chrX 15485630 15485855 -161488285 - MIR SINE MIR -6 256 15 1171 165 58 9 chrX 15485987 15486211 -161487929 - MER90 LTR ERV1 0 614 380 368 200 211 0 chrX 15486209 15486299 -161487841 - MER90 LTR ERV1 -505 109 1 * 1784 150 150 17 chrX 15486432 15486853 -161487287 + Charlie4a DNA MER1_type 32 508 0 485 231 75 8 chrX 15486943 15487077 -161487063 - MIR3 SINE MIR -13 195 53 223 217 100 0 chrX 15487105 15487165 -161486975 - L2 LINE L2 -47 3225 3160 190 315 45 9 chrX 15487176 15487287 -161486853 - L2 LINE L2 -580 2734 2620 296 270 127 53 chrX 15487775 15487964 -161486176 - MIR SINE MIR -40 222 20 2459 90 0 3 chrX 15487967 15488278 -161485862 - AluSx SINE Alu -2 310 1 2332 98 0 0 chrX 15489165 15489462 -161484678 - AluY SINE Alu -14 297 1 1748 123 36 22 chrX 15489687 15489963 -161484177 + AluSg SINE Alu 6 285 -25 232 222 19 0 chrX 15489971 15490025 -161484115 + L1MC/D LINE L1 5599 5653 -468 237 291 87 24 chrX 15490027 15490154 -161483986 + L1MC/D LINE L1 5679 5813 -1995 1222 132 0 0 chrX 15490390 15490564 -161483576 - AluSg/x SINE Alu -10 302 129 1227 87 136 16 chrX 15491519 15491703 -161482437 + AluSg/x SINE Alu 76 281 -31 2238 108 3 0 chrX 15491910 15492207 -161481933 - AluSx SINE Alu -14 298 1 668 279 8 59 chrX 15492280 15492425 -161481715 + MIR SINE MIR 20 171 -91 2072 89 8 0 chrX 15492425 15492683 -161481457 + AluSp SINE Alu 1 260 -53 2246 76 3 7 chrX 15492683 15492970 -161481170 + AluSg SINE Alu 9 295 -15 668 279 8 59 chrX 15492970 15493060 -161481080 + MIR SINE MIR 169 244 -18 695 294 0 0 chrX 15493102 15493255 -161480885 - L2 LINE L2 -4 3268 3116 262 318 0 18 chrX 15493312 15493422 -161480718 - MIR SINE MIR -71 137 30 22 56 0 0 chrX 15494388 15494424 -161479716 + AT_rich Low_complexity Low_complexity 1 36 0 2389 98 0 0 chrX 15494429 15494725 -161479415 + AluSx SINE Alu 1 296 -16 2274 99 0 0 chrX 15494874 15495157 -161478983 + AluSx SINE Alu 1 283 -29 2356 103 0 0 chrX 15495497 15495799 -161478341 - AluSq SINE Alu -10 303 2 1943 45 0 9 chrX 15495915 15496161 -161477979 - AluY SINE Alu 0 307 64 14268 85 14 43 chrX 15496170 15498309 -161475831 - L1M1 LINE L1 -3938 3627 1550 2445 68 7 0 chrX 15498692 15498988 -161475152 + AluSq SINE Alu 1 298 -15 1595 171 0 41 chrX 15499763 15500055 -161474085 - AluSx SINE Alu -3 309 30 562 309 78 0 chrX 15500057 15500174 -161473966 - MIR SINE MIR -16 246 140 2395 97 3 0 chrX 15500174 15500482 -161473658 + AluSx SINE Alu 1 309 -3 562 309 78 0 chrX 15500482 15500581 -161473559 - MIR SINE MIR -122 140 13 1748 115 19 27 chrX 15501476 15501737 -161472403 + AluSx SINE Alu 41 299 -13 1158 61 0 0 chrX 15501761 15501893 -161472247 + AluSq/x SINE Alu 12 143 -170 1954 118 7 0 chrX 15501893 15502165 -161471975 + AluSg SINE Alu 25 298 -12 2162 106 0 3 chrX 15502384 15502704 -161471436 - AluSx SINE Alu 0 319 1 1349 54 0 0 chrX 15502740 15502906 -161471234 + L1PA4 LINE L1 5987 6152 -3 2287 128 0 0 chrX 15503417 15503729 -161470411 - AluSx SINE Alu 0 312 1 2530 80 0 0 chrX 15503858 15504170 -161469970 - AluSx SINE Alu 0 312 1 2252 93 3 0 chrX 15504820 15505111 -161469029 + AluY SINE Alu 1 292 -19 210 37 0 0 chrX 15505570 15505597 -161468543 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1624 77 0 30 chrX 15505663 15505896 -161468244 - L1PA13 LINE L1 0 6163 5938 1545 150 23 4 chrX 15505886 15506146 -161467994 - L1MB5 LINE L1 -20 6154 5890 586 159 9 44 chrX 15506153 15506266 -161467874 + L1MB7 LINE L1 6015 6123 -61 2460 77 0 7 chrX 15506266 15506564 -161467576 - AluSq SINE Alu -17 296 1 8041 106 15 15 chrX 15506564 15507221 -161466919 + Tigger1 DNA MER2_type 46 705 -1713 2532 61 0 0 chrX 15507221 15507517 -161466623 + AluY SINE Alu 16 311 0 8041 106 15 15 chrX 15507517 15507998 -161466142 + Tigger1 DNA MER2_type 704 1184 -1234 2523 65 3 3 chrX 15507999 15508308 -161465832 + AluY SINE Alu 3 311 0 809 115 25 16 chrX 15508308 15508430 -161465710 + Tigger1 DNA MER2_type 1467 1589 -829 1517 139 124 33 chrX 15508430 15508704 -161465436 + AluJo SINE Alu 1 299 -13 1077 92 0 0 chrX 15508704 15508845 -161465295 + Tigger1 DNA MER2_type 2086 2226 -192 670 212 0 0 chrX 15508845 15508977 -161465163 - FLAM_C SINE Alu -10 133 2 1146 125 52 5 chrX 15508980 15509172 -161464968 + Tigger1 DNA MER2_type 2218 2418 0 377 260 92 46 chrX 15509433 15509606 -161464534 - MIR SINE MIR -18 244 64 700 186 8 0 chrX 15509671 15509789 -161464351 - Tigger6a DNA MER2_type -8 1075 957 752 157 0 0 chrX 15509789 15509904 -161464236 + FLAM_A SINE Alu 20 134 -8 4228 153 47 34 chrX 15509907 15510068 -161464072 - Tigger6a DNA MER2_type -636 961 804 567 71 71 0 chrX 15510068 15510153 -161463987 + L1MB8 LINE L1 6088 6178 0 4228 153 47 34 chrX 15510153 15510793 -161463347 - Tigger6a DNA MER2_type -793 804 149 2506 72 0 0 chrX 15510797 15511089 -161463051 + AluSx SINE Alu 1 292 -20 849 142 0 8 chrX 15511098 15511232 -161462908 + FLAM_C SINE Alu 1 133 0 371 167 11 0 chrX 15511263 15511353 -161462787 + (TG)n Simple_repeat Simple_repeat 2 92 0 1168 134 88 10 chrX 15511642 15511691 -161462449 + AluJo SINE Alu 86 130 -182 2133 89 41 24 chrX 15511691 15511983 -161462157 + AluSq SINE Alu 1 297 -16 1168 134 88 10 chrX 15511983 15512127 -161462013 + AluJo SINE Alu 130 294 -18 193 300 33 0 chrX 15512399 15512459 -161461681 - L2 LINE L2 -212 3060 2999 1899 129 50 0 chrX 15512493 15512660 -161461480 - AluSx SINE Alu -20 292 104 1207 22 0 0 chrX 15512660 15512798 -161461342 - L1PA5 LINE L1 -3 6151 6014 1899 129 50 0 chrX 15512798 15512908 -161461232 - AluSx SINE Alu -208 104 1 2352 100 6 3 chrX 15512939 15513250 -161460890 - AluSx SINE Alu 0 312 1 2422 82 0 0 chrX 15513863 15514155 -161459985 - AluSg SINE Alu -18 292 1 1567 238 79 41 chrX 15515163 15515497 -161458643 - LTR16C LTR ERVL -5 486 129 2380 92 3 3 chrX 15515497 15515803 -161458337 - AluSp SINE Alu -1 312 7 1567 238 79 41 chrX 15515803 15515909 -161458231 - LTR16C LTR ERVL -362 129 29 2340 74 7 14 chrX 15515974 15516270 -161457870 - AluSx SINE Alu -16 296 3 577 263 83 0 chrX 15518694 15518850 -161455290 - MLT1J LTR MaLR -338 173 5 471 249 136 37 chrX 15518925 15519070 -161455070 - L1ME4a LINE L1 -76 6045 5916 2354 85 10 0 chrX 15519070 15519376 -161454764 - AluSp SINE Alu -4 309 1 471 249 136 37 chrX 15519376 15519584 -161454556 - L1ME4a LINE L1 -205 5916 5657 * 482 323 0 6 chrX 15519568 15519732 -161454408 - L1MEc LINE L1 -3311 3071 2909 499 130 0 0 chrX 15519741 15519810 -161454330 - AluJ/FLAM SINE Alu -241 71 3 363 217 7 94 chrX 15519811 15519849 -161454291 - L1MEc LINE L1 -3755 2627 2587 2411 86 3 13 chrX 15519849 15520164 -161453976 - AluSx SINE Alu 0 312 1 363 217 7 94 chrX 15520164 15520263 -161453877 - L1MEc LINE L1 -3795 2587 2502 1206 230 143 28 chrX 15520268 15520659 -161453481 + MLT1J2 LTR MaLR 1 436 -14 339 269 66 70 chrX 15520686 15520913 -161453227 - L1MEc LINE L1 -3888 2496 2271 2023 132 3 13 chrX 15520961 15521264 -161452876 - AluSx SINE Alu -12 300 1 500 261 90 26 chrX 15521468 15521778 -161452362 - L1MEc LINE L1 -4640 1923 1594 762 259 75 50 chrX 15521844 15521953 -161452187 - L1MEc LINE L1 -5767 605 500 2234 78 20 10 chrX 15521953 15522246 -161451894 + AluSq SINE Alu 1 296 -17 762 259 75 50 chrX 15522246 15522456 -161451684 - L1MEc LINE L1 -5872 500 278 291 310 0 10 chrX 15522502 15522602 -161451538 - L1ME4a LINE L1 -458 5663 5565 3155 242 72 42 chrX 15522866 15523240 -161450900 + HAL1 LINE L1 2 363 -2144 2454 148 16 69 chrX 15523240 15523733 -161450407 + MLT1C LTR MaLR 1 467 0 3155 242 72 42 chrX 15523733 15524163 -161449977 + HAL1 LINE L1 363 844 -1663 2349 107 0 3 chrX 15524163 15524472 -161449668 + AluSx SINE Alu 1 308 -4 3155 242 72 42 chrX 15524472 15524662 -161449478 + HAL1 LINE L1 844 1027 -1480 2362 94 10 0 chrX 15524665 15524973 -161449167 + AluSp SINE Alu 1 311 -2 1715 151 7 56 chrX 15525068 15525372 -161448768 + AluJb SINE Alu 1 289 -23 2627 232 104 44 chrX 15525426 15525708 -161448432 + HAL1 LINE L1 1398 1662 -845 2547 56 0 0 chrX 15525708 15526010 -161448130 + AluY SINE Alu 1 302 -9 2627 232 104 44 chrX 15526010 15526566 -161447574 + HAL1 LINE L1 1662 2302 -205 1856 148 84 29 chrX 15526566 15526911 -161447229 - MLT1A1 LTR MaLR 0 365 2 2627 232 104 44 chrX 15526911 15527025 -161447115 + HAL1 LINE L1 2302 2408 -99 966 123 24 194 chrX 15527174 15527241 -161446899 - MER63 DNA MER1_type -43 1017 940 1948 153 0 10 chrX 15527241 15527541 -161446599 + AluJb SINE Alu 1 297 -15 966 123 24 194 chrX 15527541 15527708 -161446432 - MER63 DNA MER1_type -120 940 856 2301 93 7 0 chrX 15527708 15527999 -161446141 - AluSq SINE Alu -20 293 1 966 123 24 194 chrX 15527999 15528104 -161446036 - MER63 DNA MER1_type -204 856 735 333 308 77 20 chrX 15528135 15528330 -161445810 - L1ME3A LINE L1 -3 6167 5962 622 184 77 46 chrX 15528409 15528605 -161445535 - L1MC5 LINE L1 -430 7531 7330 2117 142 3 0 chrX 15528618 15528927 -161445213 - AluJb SINE Alu -2 310 1 2058 119 6 49 chrX 15529456 15529783 -161444357 + AluSq SINE Alu 1 313 0 1388 249 22 78 chrX 15531115 15531614 -161442526 + LTR16C LTR ERVL 13 483 -8 196 264 11 69 chrX 15531849 15531936 -161442204 + MIR3 SINE MIR 116 197 -11 426 153 0 0 chrX 15531939 15532011 -161442129 + L1M4 LINE L1 3571 3642 -2504 766 236 48 5 chrX 15532012 15532202 -161441938 + L1MD3 LINE L1 7571 7751 -231 1906 94 76 4 chrX 15532202 15532477 -161441663 - AluSx SINE Alu -17 295 1 766 236 48 5 chrX 15532477 15532499 -161441641 + L1MD3 LINE L1 7751 7981 -1 234 262 84 49 chrX 15533179 15533309 -161440831 - L1M4 LINE L1 -3734 2412 2288 2419 81 0 0 chrX 15533309 15533604 -161440536 - AluSx SINE Alu -17 295 1 234 262 84 49 chrX 15533604 15533736 -161440404 - L1M4 LINE L1 -3858 2288 2141 1782 132 62 4 chrX 15533823 15534095 -161440045 - AluJo SINE Alu -24 288 1 2526 56 0 3 chrX 15534390 15534692 -161439448 - AluY SINE Alu -9 302 2 2464 86 0 3 chrX 15534938 15535251 -161438889 + AluSx SINE Alu 1 312 0 2207 95 3 3 chrX 15535253 15535548 -161438592 + AluY SINE Alu 1 295 -16 21 71 0 0 chrX 15535840 15535882 -161438258 + AT_rich Low_complexity Low_complexity 1 42 0 3477 204 33 18 chrX 15536039 15537131 -161437009 - L1ME1 LINE L1 -5 6144 4850 2341 82 17 0 chrX 15537131 15537424 -161436716 + AluSp SINE Alu 1 298 -15 3477 204 33 18 chrX 15537424 15537745 -161436395 - L1ME1 LINE L1 -1299 4850 4535 2132 204 121 31 chrX 15537745 15538289 -161435851 - MLT1E LTR MaLR 0 593 1 1766 213 52 2 chrX 15538289 15538716 -161435424 - L1ME1 LINE L1 -1590 4539 4092 2224 112 7 0 chrX 15538727 15539022 -161435118 - AluSx SINE Alu -14 298 2 2421 91 3 0 chrX 15539089 15539397 -161434743 - AluSp SINE Alu -3 310 2 246 32 0 0 chrX 15539399 15539430 -161434710 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2245 95 0 3 chrX 15539431 15539715 -161434425 - AluSq SINE Alu -30 283 1 333 207 26 69 chrX 15539748 15539864 -161434276 - L1ME1 LINE L1 -4730 1580 1470 675 235 68 51 chrX 15539891 15540010 -161434130 - L1ME1 LINE L1 -4862 1257 1142 1986 130 33 3 chrX 15540010 15540310 -161433830 - AluJb SINE Alu -3 309 1 675 235 68 51 chrX 15540310 15540569 -161433571 - L1ME1 LINE L1 -4977 1142 939 1991 142 0 7 chrX 15540569 15540865 -161433275 - AluSx SINE Alu -18 294 1 303 312 129 53 chrX 15540868 15541279 -161432861 - L1ME1 LINE L1 -5269 850 472 1867 109 98 0 chrX 15541279 15541553 -161432587 - AluSx SINE Alu -11 301 1 303 312 129 53 chrX 15541553 15541840 -161432300 - L1ME1 LINE L1 -5647 472 82 2089 135 0 0 chrX 15541840 15542145 -161431995 + AluSx SINE Alu 3 307 0 303 312 129 53 chrX 15542145 15542233 -161431907 - L1ME1 LINE L1 -6037 82 2 1236 219 148 23 chrX 15542394 15542778 -161431362 - LTR16A LTR ERVL 0 450 19 355 280 23 21 chrX 15542924 15543038 -161431102 - MLT1J LTR MaLR -301 210 110 230 250 21 0 chrX 15542995 15543043 -161431097 - LTR67 LTR ERVL -400 157 109 * 240 265 0 48 chrX 15543089 15543136 -161431004 - MLT1L LTR MaLR -536 79 36 2504 75 7 0 chrX 15543136 15543444 -161430696 + AluSp SINE Alu 1 310 -3 240 265 0 48 chrX 15543444 15543479 -161430661 - MLT1L LTR MaLR -579 36 1 1058 163 54 15 chrX 15543555 15543758 -161430382 - THE1C LTR MaLR 0 364 154 952 89 0 0 chrX 15543759 15543883 -161430257 + AluSc SINE Alu 173 296 -13 1158 108 13 0 chrX 15543885 15544042 -161430098 - THE1C LTR MaLR -213 162 4 11877 78 15 12 chrX 15544045 15544356 -161429784 - THE1B-int LTR MaLR 0 1580 1271 2295 87 3 7 chrX 15544356 15544655 -161429485 - AluSc SINE Alu -11 298 1 11877 78 15 12 chrX 15544655 15545918 -161428222 - THE1B-int LTR MaLR -309 1271 1 1931 145 73 20 chrX 15545918 15546262 -161427878 - THE1B LTR MaLR 0 364 3 633 282 110 9 chrX 15546263 15546582 -161427558 - L1ME LINE L1 -368 5753 5403 2007 125 43 0 chrX 15546787 15547068 -161427072 - AluSg SINE Alu -17 293 1 2494 57 7 3 chrX 15548134 15548430 -161425710 - AluY SINE Alu -14 297 1 451 153 140 113 chrX 15548457 15548607 -161425533 + L1MC4 LINE L1 6767 7010 -1032 2246 116 0 3 chrX 15548610 15548921 -161425219 + AluSx SINE Alu 1 310 -2 2951 94 32 5 chrX 15549107 15549541 -161424599 - L1MA4A LINE L1 -6 6297 5852 314 143 0 0 chrX 15549758 15549807 -161424333 - AluJo SINE Alu -2 300 252 1162 160 0 5 chrX 15549811 15549998 -161424142 - AluJo SINE Alu -126 186 1 256 218 77 0 chrX 15550069 15550147 -161423993 + L1MC4 LINE L1 6619 6702 -1340 231 291 47 0 chrX 15550072 15550158 -161423982 - L1MC4 LINE L1 -1339 6703 6614 * 227 122 0 0 chrX 15550167 15550208 -161423932 - LTR66 LTR ERVL -172 438 398 225 170 0 0 chrX 15550231 15550278 -161423862 + LTR66 LTR ERVL 395 441 -169 2469 65 0 13 chrX 15550293 15550599 -161423541 - AluY SINE Alu -9 302 1 502 220 148 94 chrX 15550625 15550801 -161423339 + MIR SINE MIR 10 175 -87 2375 40 0 53 chrX 15550801 15551103 -161423037 + AluY SINE Alu 1 286 -25 198 0 0 0 chrX 15551110 15551132 -161423008 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 502 220 148 94 chrX 15551132 15551170 -161422970 + MIR SINE MIR 180 244 -18 339 287 43 0 chrX 15551195 15551310 -161422830 - HAL1b LINE L1 -819 529 410 408 194 112 0 chrX 15551327 15551425 -161422715 + MIR SINE MIR 5 113 -149 359 251 131 71 chrX 15551594 15551861 -161422279 + MLT1K LTR MaLR 185 467 -121 256 302 10 0 chrX 15551879 15551975 -161422165 + MIR SINE MIR 159 255 -7 2187 108 3 3 chrX 15552034 15552341 -161421799 + AluSx SINE Alu 1 307 -5 286 239 0 30 chrX 15552374 15552441 -161421699 - HAL1b LINE L1 -1062 286 222 182 235 39 0 chrX 15552547 15552598 -161421542 + L2 LINE L2 2094 2146 -1168 330 271 167 21 chrX 15552885 15553029 -161421111 + MER5A DNA MER1_type 25 189 0 2379 85 0 0 chrX 15553089 15553382 -161420758 - AluSx SINE Alu -19 293 1 2404 74 7 0 chrX 15553501 15553800 -161420340 - AluY SINE Alu -10 301 1 299 188 71 12 chrX 15554266 15554351 -161419789 - MIR SINE MIR -56 206 117 765 337 77 41 chrX 15554514 15554662 -161419478 + L2 LINE L2 2208 2349 -965 2113 96 56 88 chrX 15554662 15555038 -161419102 - THE1B LTR MaLR 0 364 1 765 337 77 41 chrX 15555038 15555372 -161418768 + L2 LINE L2 2349 2669 -645 1506 171 3 11 chrX 15555372 15555659 -161418481 + AluJb SINE Alu 1 285 -27 765 337 77 41 chrX 15555659 15555670 -161418470 + L2 LINE L2 2669 2678 -636 2080 62 29 7 chrX 15555670 15555981 -161418159 + AluSx SINE Alu 1 317 0 765 337 77 41 chrX 15555981 15556196 -161417944 + L2 LINE L2 2678 2916 -398 1758 123 14 11 chrX 15556197 15556482 -161417658 - AluSg SINE Alu -24 286 1 2074 127 0 13 chrX 15557041 15557357 -161416783 + AluSx SINE Alu 1 312 0 356 239 36 90 chrX 15557378 15557470 -161416670 + L1ME4a LINE L1 5745 5840 -281 2237 85 7 0 chrX 15557470 15557764 -161416376 + AluSx SINE Alu 7 302 -10 450 29 44 0 chrX 15557764 15557832 -161416308 + (TA)n Simple_repeat Simple_repeat 2 72 0 356 239 36 90 chrX 15557832 15557905 -161416235 + L1ME4a LINE L1 5838 5902 -219 676 183 75 116 chrX 15557928 15558196 -161415944 - L1M4b LINE L1 -5394 1465 1209 696 289 43 67 chrX 15558255 15558646 -161415494 - L1M4b LINE L1 -5676 1179 798 692 278 39 50 chrX 15558695 15558976 -161415164 - L1M4b LINE L1 -6581 278 1 1983 104 55 0 chrX 15559008 15559297 -161414843 + AluSq SINE Alu 1 305 -8 293 175 35 0 chrX 15559460 15559517 -161414623 - FAM SINE Alu 0 179 121 1314 276 60 13 chrX 15609531 15609911 -161364229 + L1M4 LINE L1 8 405 -6141 2120 119 0 0 chrX 15609916 15610194 -161363946 + AluSx SINE Alu 1 278 -34 225 0 0 0 chrX 15610197 15610222 -161363918 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1860 191 70 34 chrX 15610223 15610720 -161363420 + L1M4 LINE L1 730 1244 -5302 1937 144 0 7 chrX 15610720 15611011 -161363129 + AluSx SINE Alu 1 289 -23 293 111 37 0 chrX 15611635 15611689 -161362451 + GA-rich Low_complexity Low_complexity 3 58 0 669 221 32 29 chrX 15611689 15611915 -161362225 + L1M4 LINE L1 1393 2025 -4540 359 169 28 0 chrX 15611883 15611968 -161362172 + L1M4 LINE L1 4951 5037 -1607 * 738 215 151 16 chrX 15611971 15612157 -161361983 + MIR SINE MIR 23 233 -29 344 252 80 40 chrX 15612157 15612308 -161361832 - HAL1b LINE L1 -819 529 410 441 194 112 0 chrX 15612325 15612423 -161361717 + MIR SINE MIR 5 113 -149 344 255 131 71 chrX 15612592 15612859 -161361281 + MLT1K LTR MaLR 185 467 -121 286 302 10 0 chrX 15612877 15612973 -161361167 + MIR SINE MIR 159 255 -7 2135 111 3 3 chrX 15613032 15613339 -161360801 + AluSx SINE Alu 1 307 -5 289 239 0 30 chrX 15613372 15613439 -161360701 - HAL1b LINE L1 -1062 286 222 199 235 39 0 chrX 15613545 15613596 -161360544 + L2 LINE L2 2094 2146 -1168 331 263 188 23 chrX 15613887 15614020 -161360120 + MER5A DNA MER1_type 29 183 -6 29 28 0 0 chrX 15614194 15614230 -161359910 + AT_rich Low_complexity Low_complexity 1 36 0 1065 214 134 17 chrX 15614801 15615091 -161359049 + MER5C DNA MER1_type 1 324 0 344 294 46 51 chrX 15615092 15615289 -161358851 + L1M4b LINE L1 3275 3470 -3174 960 196 6 0 chrX 15615292 15615465 -161358675 + AluJb SINE Alu 137 310 -2 2315 91 3 0 chrX 15615587 15615884 -161358256 - AluSx SINE Alu -14 298 1 250 275 22 44 chrX 15615910 15616001 -161358139 - MLT1J LTR MaLR -41 470 382 1622 172 13 20 chrX 15616138 15616440 -161357700 + AluJb SINE Alu 1 300 -12 323 300 88 31 chrX 15616458 15616618 -161357522 - MLT1J LTR MaLR -342 169 1 230 300 43 73 chrX 15616630 15617218 -161356922 + L1M4b LINE L1 3595 4164 -2480 1854 150 7 10 chrX 15617218 15617551 -161356589 + AluJb SINE Alu 1 312 0 230 300 43 73 chrX 15617551 15617595 -161356545 + L1M4b LINE L1 4164 4208 -2436 2120 95 0 41 chrX 15617623 15617938 -161356202 - AluSx SINE Alu -10 302 1 180 0 0 0 chrX 15617946 15617966 -161356174 + (T)n Simple_repeat Simple_repeat 1 20 0 2043 161 119 5 chrX 15617966 15618344 -161355796 + LOR1b LTR ERV1 41 461 0 1856 123 29 13 chrX 15618344 15618653 -161355487 + LOR1b-int LTR ERV1 1 314 -7806 2198 115 0 0 chrX 15618653 15618957 -161355183 + AluSx SINE Alu 1 304 -8 2169 156 177 16 chrX 15618958 15619445 -161354695 + LTR57-int LTR ERVL 1032 1596 -3747 * 3217 99 36 4 chrX 15619308 15619804 -161354336 + LOR1b-int LTR ERV1 1409 1920 -6200 2380 64 4 0 chrX 15619823 15620127 -161354013 + AluY SINE Alu 1 305 0 735 101 0 0 chrX 15620167 15620266 -161353874 + LOR1b-int LTR ERV1 2363 2461 -5659 1928 124 25 4 chrX 15620267 15620542 -161353598 + AluSx SINE Alu 1 281 -31 186 71 0 0 chrX 15620542 15620570 -161353570 + (CTAA)n Simple_repeat Simple_repeat 1 28 0 818 90 0 131 chrX 15620584 15620729 -161353411 + FLAM_C SINE Alu 1 126 -7 406 305 94 10 chrX 15620795 15621158 -161352982 + L1ME LINE L1 5197 5586 -535 1218 165 55 15 chrX 15621328 15621639 -161352501 - MLT2B2 LTR ERVL 0 515 138 2195 106 0 7 chrX 15621639 15621931 -161352209 - AluSg SINE Alu -20 290 1 680 184 49 104 chrX 15621931 15622069 -161352071 - L1MC5 LINE L1 -251 7710 7566 1580 133 75 11 chrX 15622069 15622390 -161351750 - AluJb SINE Alu 0 312 6 680 184 49 104 chrX 15622390 15622424 -161351716 - L1MC5 LINE L1 -395 7566 7532 1920 148 10 0 chrX 15622424 15622715 -161351425 + AluJb SINE Alu 1 294 -18 680 184 49 104 chrX 15622715 15622829 -161351311 - L1MC5 LINE L1 -429 7532 7439 2266 198 104 76 chrX 15622840 15623382 -161350758 - L1MC5 LINE L1 -465 7496 6922 513 170 0 20 chrX 15623382 15623482 -161350658 - L1MB7 LINE L1 -19 6165 6068 2266 198 104 76 chrX 15623482 15623769 -161350371 - L1MC5 LINE L1 -1039 6922 6644 950 126 0 15 chrX 15625459 15625594 -161348546 - FLAM_C SINE Alu 0 133 1 2113 65 4 8 chrX 15625683 15625944 -161348196 + AluSq SINE Alu 1 260 -53 319 257 138 99 chrX 15627114 15627476 -161346664 - L1M2 LINE L1 -5578 1271 896 401 285 165 80 chrX 15627701 15628336 -161345804 - L1M2 LINE L1 -5581 1268 580 532 149 0 11 chrX 15629572 15629666 -161344474 - FLAM_C SINE Alu -2 141 49 2295 95 10 0 chrX 15630052 15630346 -161343794 - AluSx SINE Alu -15 297 1 25 65 0 0 chrX 15632056 15632102 -161342038 + AT_rich Low_complexity Low_complexity 1 46 0 287 273 71 55 chrX 15632201 15632384 -161341756 - L1ME2 LINE L1 -134 6030 5845 1977 177 49 97 chrX 15632397 15632709 -161341431 + Charlie1b DNA MER1_type 1 277 -2484 2508 80 34 11 chrX 15632709 15633058 -161341082 + L1PA14 LINE L1 5803 6159 -2 1977 177 49 97 chrX 15633058 15633294 -161340846 + Charlie1b DNA MER1_type 277 523 0 765 260 118 52 chrX 15633312 15633803 -161340337 - L1ME2 LINE L1 -362 5802 5218 1983 120 0 7 chrX 15633803 15634110 -161340030 - AluSx SINE Alu 0 305 1 765 260 118 52 chrX 15634110 15634430 -161339710 - L1ME2 LINE L1 -946 5218 4920 379 300 139 21 chrX 15634486 15634574 -161339566 - L1ME2 LINE L1 -1308 4838 4762 2530 55 0 0 chrX 15634574 15634867 -161339273 - AluY SINE Alu -18 293 1 379 300 139 21 chrX 15634867 15635015 -161339125 - L1ME2 LINE L1 -1384 4762 4574 235 294 94 12 chrX 15635082 15635252 -161338888 - L1ME2 LINE L1 -1683 4463 4280 952 217 30 15 chrX 15635257 15635455 -161338685 + HsTC2 DNA Tc2 2 202 -1696 237 213 21 0 chrX 15635456 15635503 -161338637 + HsTC2 DNA Tc2 491 538 -1360 * 1451 183 106 35 chrX 15635494 15635705 -161338435 + HsTC2 DNA Tc2 1287 1481 -417 1942 101 4 4 chrX 15635705 15635972 -161338168 - AluSx SINE Alu -45 267 1 1451 183 106 35 chrX 15635972 15636165 -161337975 + HsTC2 DNA Tc2 1481 1896 -2 460 85 0 0 chrX 15636186 15636245 -161337895 + Alu SINE Alu 2 60 -258 223 48 24 24 chrX 15636253 15636295 -161337845 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 540 286 43 47 chrX 15636323 15636546 -161337594 - L1ME2 LINE L1 -1924 4222 3999 1518 99 0 52 chrX 15636546 15636778 -161337362 - AluSg/x SINE Alu -8 302 83 540 286 43 47 chrX 15636778 15636876 -161337264 - L1ME2 LINE L1 -2147 3999 3902 1568 157 51 14 chrX 15636902 15637196 -161336944 - AluJo SINE Alu 0 312 8 248 284 59 0 chrX 15637257 15637359 -161336781 - L1ME2 LINE L1 -2438 3708 3601 2135 92 7 30 chrX 15637389 15637692 -161336448 - AluSq SINE Alu -14 299 4 27 62 0 0 chrX 15638122 15638170 -161335970 + AT_rich Low_complexity Low_complexity 1 48 0 2342 97 0 0 chrX 15638212 15638512 -161335628 - AluSx SINE Alu -12 300 1 1715 109 27 0 chrX 15638519 15638775 -161335365 - L1MA5 LINE L1 -30 6270 6008 311 273 86 43 chrX 15638775 15638962 -161335178 - L1ME2 LINE L1 -3167 2979 2785 1579 208 78 69 chrX 15638966 15639520 -161334620 + L1M4 LINE L1 4312 4870 -1276 2027 133 6 25 chrX 15639596 15639913 -161334227 - AluSx SINE Alu -1 311 1 1324 100 0 17 chrX 15639976 15640156 -161333984 + AluSp SINE Alu 121 297 -16 292 328 115 8 chrX 15640284 15640519 -161333621 - L1M4 LINE L1 -1880 4266 4007 1839 156 63 3 chrX 15640598 15640931 -161333209 - L1MB7 LINE L1 0 6184 5832 180 0 0 0 chrX 15641134 15641154 -161332986 + (TG)n Simple_repeat Simple_repeat 2 21 0 198 0 0 0 chrX 15641172 15641194 -161332946 + (T)n Simple_repeat Simple_repeat 1 22 0 2523 83 0 0 chrX 15641279 15641591 -161332549 - AluSx SINE Alu 0 312 1 812 183 7 14 chrX 15641591 15641733 -161332407 - AluJo SINE Alu -169 143 3 231 36 0 0 chrX 15641745 15641773 -161332367 + (A)n Simple_repeat Simple_repeat 1 28 0 210 162 0 0 chrX 15641870 15641907 -161332233 + T-rich Low_complexity Low_complexity 1 37 0 2180 98 0 26 chrX 15642563 15642870 -161331270 + AluSq SINE Alu 1 299 -14 2241 103 3 3 chrX 15643031 15643332 -161330808 - AluSc SINE Alu -8 301 1 532 277 108 40 chrX 15645310 15645809 -161328331 + HAL1 LINE L1 816 1348 -1159 26 0 0 0 chrX 15646445 15646471 -161327669 + AT_rich Low_complexity Low_complexity 1 26 0 258 105 0 0 chrX 15646566 15646604 -161327536 + (T)n Simple_repeat Simple_repeat 1 38 0 208 384 23 0 chrX 15647253 15647339 -161326801 - L2 LINE L2 -545 2769 2682 2327 100 0 3 chrX 15648070 15648370 -161325770 - AluSx SINE Alu -13 299 1 2170 118 0 9 chrX 15648510 15648825 -161325315 - AluSx SINE Alu 0 312 1 254 332 121 11 chrX 15649315 15649505 -161324635 - L2 LINE L2 -432 2882 2672 390 42 0 0 chrX 15649808 15649856 -161324284 + (GA)n Simple_repeat Simple_repeat 2 49 0 372 242 58 76 chrX 15650221 15650404 -161323736 + L1ME3 LINE L1 5977 6164 0 1643 148 16 49 chrX 15651505 15651809 -161322331 - AluJb SINE Alu -18 294 1 2206 125 0 6 chrX 15651842 15652154 -161321986 + AluSx SINE Alu 1 310 -2 2441 68 3 7 chrX 15652310 15652606 -161321534 - AluSc SINE Alu -14 295 1 1709 172 44 0 chrX 15652617 15652914 -161321226 - AluJo SINE Alu -2 310 1 235 243 83 35 chrX 15653183 15653297 -161320843 + MIR SINE MIR 50 167 -71 628 216 27 40 chrX 15653305 15653453 -161320687 - MIR SINE MIR -46 216 71 2242 109 0 3 chrX 15653488 15653792 -161320348 - AluSx SINE Alu -9 303 1 2444 77 3 0 chrX 15653954 15654252 -161319888 - AluSp SINE Alu -14 299 1 2304 96 10 3 chrX 15654344 15654646 -161319494 - AluSx SINE Alu -8 304 1 2191 111 0 7 chrX 15654838 15655145 -161318995 - AluY SINE Alu -6 305 1 22 0 0 0 chrX 15655148 15655170 -161318970 + AT_rich Low_complexity Low_complexity 1 22 0 243 226 0 19 chrX 15655237 15655290 -161318850 + MIR SINE MIR 71 122 -140 2434 59 3 23 chrX 15655839 15656143 -161317997 - AluY SINE Alu -13 298 1 2407 83 0 3 chrX 15656190 15656502 -161317638 - AluY SINE Alu 0 311 1 1729 161 20 7 chrX 15656502 15656794 -161317346 - AluSx SINE Alu -16 296 1 2349 81 0 13 chrX 15657859 15658157 -161315983 + AluSx SINE Alu 1 294 -18 1961 143 0 3 chrX 15658297 15658590 -161315550 - AluSx SINE Alu -14 298 7 274 287 29 73 chrX 15659151 15659287 -161314853 - L2 LINE L2 -5 3267 3138 484 278 70 48 chrX 15659500 15659770 -161314370 - L1ME LINE L1 -436 5685 5410 247 322 151 47 chrX 15659812 15661094 -161313046 - L2 LINE L2 -673 2641 1226 2238 81 0 7 chrX 15661094 15661400 -161312740 - AluSx SINE Alu 0 304 1 2155 97 47 53 chrX 15661420 15661644 -161312496 + MER46B DNA MER2_type 1 99 -2632 2061 82 6 91 chrX 15661644 15661974 -161312166 - AluSx SINE Alu -10 302 1 2155 97 47 53 chrX 15661974 15662110 -161312030 + MER46B DNA MER2_type 99 234 -2 22 35 0 0 chrX 15662508 15662537 -161311603 + AT_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chrX 15662628 15662687 -161311453 + AT_rich Low_complexity Low_complexity 1 59 0 1429 187 3 50 chrX 15662879 15663178 -161310962 - AluJb SINE Alu -27 285 1 2166 114 3 0 chrX 15663373 15663663 -161310477 - AluSx SINE Alu -21 291 1 886 195 0 30 chrX 15663698 15663862 -161310278 + FRAM SINE Alu 1 159 -7 1595 155 22 57 chrX 15664245 15664562 -161309578 + AluJo SINE Alu 1 306 -6 259 298 69 30 chrX 15664717 15664848 -161309292 + L2 LINE L2 3178 3313 0 313 91 0 318 chrX 15665008 15665118 -161309022 - FAM SINE Alu -51 124 77 198 353 35 12 chrX 15665119 15665204 -161308936 - MIR SINE MIR -158 104 18 396 333 109 0 chrX 15665605 15665761 -161308379 - L2 LINE L2 -1 3271 3099 2227 87 7 27 chrX 15665805 15666105 -161308035 + AluSg SINE Alu 1 294 -16 377 213 150 8 chrX 15666188 15666315 -161307825 - L1MC5 LINE L1 -134 7827 7683 415 314 110 71 chrX 15666452 15666757 -161307383 - L2 LINE L2 -422 2892 2562 2383 82 0 0 chrX 15666757 15667050 -161307090 - AluY SINE Alu -18 293 1 415 314 110 71 chrX 15667050 15667197 -161306943 - L2 LINE L2 -752 2562 2422 28 29 0 0 chrX 15667966 15668001 -161306139 + AT_rich Low_complexity Low_complexity 1 35 0 1333 109 35 0 chrX 15668001 15668203 -161305937 - L1MA8 LINE L1 -3 6288 6080 589 269 35 7 chrX 15668695 15668840 -161305300 + MIR SINE MIR 36 184 -78 349 315 34 14 chrX 15669423 15669569 -161304571 + MIR SINE MIR 95 243 -19 2221 114 0 3 chrX 15669615 15669913 -161304227 - AluSx SINE Alu -15 297 1 1601 157 63 18 chrX 15670538 15670824 -161303316 + AluJb SINE Alu 1 299 -13 2697 156 65 2 chrX 15671020 15671500 -161302640 + L1MB7 LINE L1 5658 6167 -17 2460 119 37 15 chrX 15671711 15672121 -161302019 - L1MB3 LINE L1 -1 6182 5764 272 250 10 77 chrX 15672185 15672211 -161301929 - HAL1 LINE L1 -100 2407 2381 2953 142 147 26 chrX 15672211 15672660 -161301480 + MER6A DNA MER2_type 2 528 -337 2185 116 0 3 chrX 15672660 15672961 -161301179 - AluSx SINE Alu -12 300 1 2953 142 147 26 chrX 15672961 15673048 -161301092 + MER6A DNA MER2_type 528 603 -2 272 250 10 77 chrX 15673048 15673117 -161301023 - HAL1 LINE L1 -126 2381 2309 1718 107 48 55 chrX 15673117 15673269 -161300871 - AluSg SINE Alu -21 289 138 2507 50 0 10 chrX 15673269 15673567 -161300573 - AluY SINE Alu -15 296 2 1718 107 48 55 chrX 15673567 15673705 -161300435 - AluSg SINE Alu -172 138 1 272 250 10 77 chrX 15673705 15673804 -161300336 - HAL1 LINE L1 -198 2309 2225 231 227 98 104 chrX 15673895 15674033 -161300107 - HAL1b LINE L1 -437 911 773 2276 96 7 0 chrX 15674033 15674326 -161299814 - AluSp SINE Alu -18 295 1 231 227 98 104 chrX 15674326 15674350 -161299790 - HAL1b LINE L1 -575 773 750 401 221 79 0 chrX 15674370 15674497 -161299643 - HAL1 LINE L1 -343 2164 2028 1883 144 17 17 chrX 15674510 15674808 -161299332 - AluJo SINE Alu -14 298 1 673 158 238 12 chrX 15674880 15675044 -161299096 - MER3 DNA MER1_type -8 201 1 720 192 56 0 chrX 15675102 15675227 -161298913 + FLAM_C SINE Alu 2 133 -10 348 250 186 42 chrX 15675402 15675666 -161298474 + HAL1b LINE L1 49 350 -998 1132 248 29 32 chrX 15675673 15675984 -161298156 + HAL1b LINE L1 418 727 -621 313 228 159 53 chrX 15675998 15676112 -161298028 + HAL1b LINE L1 832 933 -415 1655 160 78 0 chrX 15676112 15676394 -161297746 - AluJo SINE Alu -8 304 1 313 228 159 53 chrX 15676394 15676468 -161297672 + HAL1b LINE L1 933 1040 -308 642 280 146 19 chrX 15676468 15676736 -161297404 - L2 LINE L2 -1 3312 3011 2158 222 238 42 chrX 15676739 15677174 -161296966 - L2 LINE L2 -978 2336 1988 1812 169 7 3 chrX 15677174 15677469 -161296671 - AluJo SINE Alu -16 296 1 2158 222 238 42 chrX 15677469 15677549 -161296591 - L2 LINE L2 -1326 1988 1925 2413 88 3 0 chrX 15677549 15677846 -161296294 + AluSq SINE Alu 1 298 -15 2158 222 238 42 chrX 15677846 15678433 -161295707 - L2 LINE L2 -1389 1925 1016 275 352 23 16 chrX 15678642 15678770 -161295370 + MIR SINE MIR 19 147 -115 283 366 159 8 chrX 15680991 15681242 -161292898 + L2 LINE L2 2363 2651 -663 195 317 96 19 chrX 15681393 15681497 -161292643 - MER5B DNA MER1_type -65 113 2 21 0 0 0 chrX 15682080 15682101 -161292039 + AT_rich Low_complexity Low_complexity 1 21 0 467 274 0 18 chrX 15682655 15682768 -161291372 + MIR SINE MIR 79 189 -73 2081 121 40 0 chrX 15683486 15683784 -161290356 + AluSx SINE Alu 1 310 -2 1517 151 107 4 chrX 15684279 15684414 -161289726 - AluJb SINE Alu -12 300 180 450 0 0 0 chrX 15684414 15684464 -161289676 + (TG)n Simple_repeat Simple_repeat 2 51 0 1517 151 107 4 chrX 15684464 15684600 -161289540 - AluJb SINE Alu -132 180 1 2318 62 10 14 chrX 15684867 15685159 -161288981 + AluY SINE Alu 2 292 -19 291 167 19 0 chrX 15685962 15686016 -161288124 - L2 LINE L2 -4 3309 3255 1817 158 0 24 chrX 15687496 15687794 -161286346 - AluSx SINE Alu -21 291 1 25 0 0 0 chrX 15689567 15689592 -161284548 + AT_rich Low_complexity Low_complexity 1 25 0 2136 98 3 41 chrX 15690798 15691116 -161283024 - AluSg1 SINE Alu -1 308 3 198 0 0 0 chrX 15691591 15691613 -161282527 + (T)n Simple_repeat Simple_repeat 1 22 0 980 166 37 32 chrX 15693269 15693456 -161280684 + MER5A DNA MER1_type 1 188 -1 189 0 0 0 chrX 15693758 15693779 -161280361 + (TG)n Simple_repeat Simple_repeat 2 22 0 318 269 107 31 chrX 15695388 15695612 -161278528 - L1ME LINE L1 -626 5540 5299 309 314 53 26 chrX 15695651 15695877 -161278263 - L1ME LINE L1 -924 5222 4991 1017 180 0 0 chrX 15695919 15696080 -161278060 + FRAM SINE Alu 1 153 -23 335 271 159 35 chrX 15696101 15696440 -161277700 - L1ME LINE L1 -1180 4966 4586 2234 98 3 0 chrX 15696443 15696740 -161277400 - AluSx SINE Alu -14 298 1 1700 87 61 32 chrX 15696923 15697200 -161276940 + AluSq SINE Alu 1 285 -28 416 236 11 0 chrX 15697385 15697474 -161276666 - MER5A DNA MER1_type -83 106 17 437 204 299 7 chrX 15697497 15697634 -161276506 + MER5B DNA MER1_type 1 177 -1 457 296 134 37 chrX 15697636 15697763 -161276377 - L1ME LINE L1 -2757 3389 3276 2343 96 0 0 chrX 15697763 15698064 -161276076 - AluSx SINE Alu -11 301 1 457 296 134 37 chrX 15698064 15698182 -161275958 - L1ME LINE L1 -2870 3276 3171 2161 134 0 6 chrX 15698182 15698496 -161275644 - AluJo SINE Alu 0 312 1 457 296 134 37 chrX 15698496 15698837 -161275303 - L1ME LINE L1 -2975 3171 2745 874 159 0 0 chrX 15698995 15699127 -161275013 - FLAM_C SINE Alu 0 133 2 470 315 102 35 chrX 15699535 15699986 -161274154 - HAL1 LINE L1 -827 1680 1200 195 129 0 0 chrX 15700129 15700160 -161273980 + (A)n Simple_repeat Simple_repeat 1 31 0 2820 118 11 122 chrX 15700490 15701023 -161273117 + MER101 LTR ERV1 1 474 0 499 287 32 103 chrX 15701042 15701363 -161272777 - L1ME LINE L1 -597 5573 5231 407 35 18 0 chrX 15701363 15701420 -161272720 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 636 121 222 0 chrX 15701420 15701519 -161272621 - FLAM_C SINE Alu -12 121 1 499 287 32 103 chrX 15701519 15701585 -161272555 - L1ME LINE L1 -938 5232 5163 1769 135 14 44 chrX 15701585 15701881 -161272259 - AluJb SINE Alu -25 287 1 499 287 32 103 chrX 15701881 15702336 -161271804 - L1ME LINE L1 -1007 5163 4780 2106 125 0 0 chrX 15702373 15702653 -161271487 - AluSx SINE Alu -32 280 1 3578 151 16 31 chrX 15702663 15702824 -161271316 - L1MB7 LINE L1 0 6184 6022 2230 115 3 3 chrX 15702824 15703136 -161271004 + AluSq SINE Alu 2 313 0 3578 151 16 31 chrX 15703136 15703645 -161270495 - L1MB7 LINE L1 -162 6022 5524 674 145 0 65 chrX 15703646 15703770 -161270370 + AluJb SINE Alu 190 305 -7 312 228 24 55 chrX 15703772 15703899 -161270241 - L1MEd LINE L1 -5000 1205 1083 1995 201 60 9 chrX 15703956 15704408 -161269732 - L1ME1 LINE L1 -278 5888 5414 1527 239 43 10 chrX 15704464 15704857 -161269283 - L1ME1 LINE L1 -23 6143 5738 * 7605 83 7 29 chrX 15704845 15705183 -161268957 + L1MA1 LINE L1 5138 5482 -820 2489 70 3 0 chrX 15705183 15705484 -161268656 + AluSp SINE Alu 1 302 -11 7605 83 7 29 chrX 15705484 15706335 -161267805 + L1MA1 LINE L1 5482 6302 0 1544 209 163 3 chrX 15706371 15706633 -161267507 - L1ME1 LINE L1 -420 5746 5527 2022 121 16 22 chrX 15706633 15706947 -161267193 - AluJb SINE Alu 0 312 1 1544 209 163 3 chrX 15706947 15707160 -161266980 - L1ME1 LINE L1 -639 5527 5203 3625 223 66 38 chrX 15707179 15707432 -161266708 - L1MEd LINE L1 -5302 1094 850 1911 149 10 23 chrX 15707432 15707734 -161266406 - AluJb SINE Alu -14 298 1 3625 223 66 38 chrX 15707734 15708535 -161265605 - L1MEd LINE L1 -5546 850 10 2028 96 6 81 chrX 15708584 15708906 -161265234 - AluSx SINE Alu -14 298 1 243 0 0 0 chrX 15709234 15709261 -161264879 + (TG)n Simple_repeat Simple_repeat 2 28 0 687 269 14 0 chrX 15709471 15709694 -161264446 - HAL1b LINE L1 -520 828 603 471 271 157 8 chrX 15709688 15709943 -161264197 - HAL1 LINE L1 -604 1903 1611 * 322 289 96 60 chrX 15710037 15710349 -161263791 - HAL1 LINE L1 -1043 1464 1126 2172 119 3 3 chrX 15710349 15710643 -161263497 - AluSp SINE Alu -19 294 1 322 289 96 60 chrX 15710643 15710842 -161263298 - HAL1 LINE L1 -1381 1126 935 1598 123 123 15 chrX 15711207 15711468 -161262672 - AluJb SINE Alu -23 289 1 2293 112 3 0 chrX 15712055 15712349 -161261791 - AluSg SINE Alu -15 295 1 2019 120 94 26 chrX 15712563 15712904 -161261236 + THE1B LTR MaLR 1 364 0 586 235 59 12 chrX 15713060 15713230 -161260910 + MER5B DNA MER1_type 1 178 0 1789 166 3 0 chrX 15713781 15714065 -161260075 + AluJb SINE Alu 11 295 -17 2504 46 0 0 chrX 15714070 15714384 -161259756 + AluY SINE Alu 1 314 0 2121 109 6 26 chrX 15714390 15714702 -161259438 + AluSx SINE Alu 1 306 -6 2622 44 0 0 chrX 15714725 15715023 -161259117 - AluY SINE Alu -9 302 5 2091 125 0 26 chrX 15715303 15715615 -161258525 - AluJb SINE Alu -8 304 1 725 133 9 18 chrX 15716330 15716443 -161257697 - FLAM_C SINE Alu -15 128 17 207 162 0 0 chrX 15716864 15716901 -161257239 + GA-rich Low_complexity Low_complexity 6 42 0 24 32 0 0 chrX 15717089 15717120 -161257020 + AT_rich Low_complexity Low_complexity 1 31 0 365 250 62 56 chrX 15717304 15717431 -161256709 + MER112 DNA MER1_type 8 133 -127 2129 107 7 29 chrX 15717431 15717740 -161256400 - AluSx SINE Alu -10 302 1 1805 142 17 37 chrX 15717743 15718039 -161256101 - AluJb SINE Alu -22 290 1 365 250 62 56 chrX 15718039 15718067 -161256073 + MER112 DNA MER1_type 134 168 -92 1629 155 31 36 chrX 15718084 15718599 -161255541 + L1MB4 LINE L1 5093 5609 -571 2283 87 7 3 chrX 15718599 15718885 -161255255 + AluSx SINE Alu 13 299 -13 1629 155 31 36 chrX 15718885 15719204 -161254936 + L1MB4 LINE L1 5609 6079 -101 2262 93 31 0 chrX 15719204 15719495 -161254645 - AluSx SINE Alu -9 303 4 1629 155 31 36 chrX 15719495 15719587 -161254553 + L1MB4 LINE L1 6079 6170 -10 14124 127 15 21 chrX 15770341 15772497 -161201643 - MER57A-int LTR ERV1 -5394 2143 1 2302 159 15 29 chrX 15772497 15772526 -161201614 - MER57A LTR ERV1 0 403 375 2234 81 0 13 chrX 15772526 15772781 -161201359 - AluSx SINE Alu -7 305 53 318 26 0 0 chrX 15772781 15772820 -161201320 + (CCCCCA)n Simple_repeat Simple_repeat 3 41 0 2234 81 0 13 chrX 15772820 15772873 -161201267 - AluSx SINE Alu -259 53 1 2302 159 15 29 chrX 15772873 15773252 -161200888 - MER57A LTR ERV1 -28 375 1 239 268 250 0 chrX 15773649 15773761 -161200379 + MIR SINE MIR 37 176 -86 29 0 0 0 chrX 15774067 15774096 -161200044 + AT_rich Low_complexity Low_complexity 1 29 0 2099 131 0 0 chrX 15774101 15774407 -161199733 + AluJb SINE Alu 1 306 -6 328 234 131 0 chrX 15774408 15774515 -161199625 - MIR SINE MIR -6 256 136 374 53 18 0 chrX 15774627 15774684 -161199456 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2225 64 0 7 chrX 15774693 15774973 -161199167 - AluSg SINE Alu -32 278 1 285 139 208 14 chrX 15775256 15775328 -161198812 - L1ME3A LINE L1 -272 5898 5813 711 232 65 13 chrX 15775332 15775487 -161198653 - MIR SINE MIR -98 164 2 227 79 26 0 chrX 15775594 15775632 -161198508 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 291 54 27 0 chrX 15775805 15775842 -161198298 + MER68 LTR ERV1 354 391 -171 2279 64 3 3 chrX 15776024 15776320 -161197820 - AluY SINE Alu -15 296 1 1112 214 14 0 chrX 15777054 15777274 -161196866 - MER58A DNA MER1_type 0 224 2 3087 155 37 37 chrX 15777451 15777510 -161196630 + MER68 LTR ERV1 1 59 -503 1968 131 0 0 chrX 15777510 15777820 -161196320 + AluSx SINE Alu 1 310 0 3087 155 37 37 chrX 15777820 15778321 -161195819 + MER68 LTR ERV1 58 562 0 1996 116 0 20 chrX 15778858 15778996 -161195144 + AluJb SINE Alu 1 140 -172 2238 69 0 14 chrX 15778996 15779309 -161194831 + AluY SINE Alu 1 311 0 1996 116 0 20 chrX 15779309 15779472 -161194668 + AluJb SINE Alu 140 296 -16 643 131 10 0 chrX 15779696 15779795 -161194345 + LTR8A LTR ERV1 1 100 -627 24 53 0 0 chrX 15781328 15781366 -161192774 + AT_rich Low_complexity Low_complexity 1 38 0 245 265 0 26 chrX 15781398 15781515 -161192625 + (TA)n Simple_repeat Simple_repeat 1 114 0 2191 105 0 0 chrX 15781545 15781841 -161192299 - AluSx SINE Alu -16 296 1 2023 179 5 29 chrX 15782063 15782437 -161191703 - MLT1A1 LTR MaLR 0 365 1 255 326 161 29 chrX 15782645 15782918 -161191222 + L2 LINE L2 2467 2775 -539 617 301 29 19 chrX 15782957 15783163 -161190977 - MIR SINE MIR -4 258 51 3513 198 41 26 chrX 15783171 15784010 -161190130 + L1ME1 LINE L1 4620 5444 -722 1835 99 0 0 chrX 15784010 15784284 -161189856 + AluY SINE Alu 39 312 0 3513 198 41 26 chrX 15784284 15784654 -161189486 + L1ME1 LINE L1 5444 5848 -318 1687 190 3 0 chrX 15784654 15784944 -161189196 - AluJb SINE Alu -21 291 1 3513 198 41 26 chrX 15784944 15785256 -161188884 + L1ME1 LINE L1 5848 6154 -12 1905 118 0 51 chrX 15785309 15785622 -161188518 + AluJb SINE Alu 1 297 -15 618 95 0 0 chrX 15785937 15786032 -161188108 + (CA)n Simple_repeat Simple_repeat 2 96 0 1175 301 53 6 chrX 15786288 15786757 -161187383 + LTR16C LTR ERVL 1 491 0 515 309 60 29 chrX 15787117 15787600 -161186540 - MER20B DNA MER1_type 0 783 286 1032 105 0 0 chrX 15789717 15789928 -161184212 + (CTG)n Simple_repeat Simple_repeat 1 211 0 219 248 0 0 chrX 15790591 15790696 -161183444 + (CAG)n Simple_repeat Simple_repeat 3 107 0 23 78 0 0 chrX 15791240 15791291 -161182849 + AT_rich Low_complexity Low_complexity 1 51 0 1516 211 35 3 chrX 15791314 15791660 -161182480 - L1MB2 LINE L1 -3 6168 5812 2256 189 51 14 chrX 15792289 15792782 -161181358 - L1MB5 LINE L1 0 6174 5664 1226 158 167 12 chrX 15793748 15794084 -161180056 - Charlie5 DNA MER1_type 0 2624 2237 745 146 8 0 chrX 15794087 15794210 -161179930 - Charlie5 DNA MER1_type -2488 124 1 2247 77 13 3 chrX 15794560 15794858 -161179282 - AluSx SINE Alu -11 301 1 443 150 40 50 chrX 15794933 15795033 -161179107 + L1MC5 LINE L1 7811 7909 -52 297 244 122 61 chrX 15796295 15796426 -161177714 - MIR SINE MIR -56 206 68 498 222 0 0 chrX 15797608 15797734 -161176406 + (CA)n Simple_repeat Simple_repeat 1 126 0 1117 221 11 32 chrX 15798244 15798524 -161175616 - L2 LINE L2 -2435 879 606 378 0 0 0 chrX 15798604 15798646 -161175494 + (TG)n Simple_repeat Simple_repeat 1 42 0 1999 93 0 4 chrX 15798646 15798926 -161175214 - AluSx SINE Alu -33 279 1 268 362 110 17 chrX 15798945 15799246 -161174894 - L2 LINE L2 -22 3250 2922 1843 123 22 66 chrX 15799397 15799714 -161174426 + AluJb SINE Alu 5 307 -5 2043 143 3 7 chrX 15800291 15800599 -161173541 + AluSx SINE Alu 1 307 -5 353 241 13 0 chrX 15800666 15800745 -161173395 + MER116 DNA Mariner 1 80 0 292 295 32 21 chrX 15801027 15801122 -161173018 + MIR SINE MIR 121 216 -46 270 283 121 20 chrX 15801153 15801252 -161172888 + MER5A DNA MER1_type 20 128 -61 414 0 0 0 chrX 15801619 15801665 -161172475 + (TG)n Simple_repeat Simple_repeat 1 46 0 218 244 22 0 chrX 15802002 15802047 -161172093 + MER5A DNA MER1_type 61 106 -83 396 0 0 0 chrX 15802059 15802103 -161172037 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 813 147 0 8 chrX 15802103 15802221 -161171919 - FLAM_C SINE Alu -192 120 2 254 273 0 0 chrX 15802224 15802279 -161171861 + MER5A DNA MER1_type 129 183 -6 365 289 44 25 chrX 15802438 15802597 -161171543 + MIR SINE MIR 46 207 -55 195 42 0 0 chrX 15802801 15802825 -161171315 + (CA)n Simple_repeat Simple_repeat 2 25 0 972 179 12 0 chrX 15803158 15803331 -161170809 - MER5A DNA MER1_type 0 189 15 189 0 0 0 chrX 15803430 15803451 -161170689 + (T)n Simple_repeat Simple_repeat 1 21 0 450 110 30 100 chrX 15803489 15803589 -161170551 - MER5A DNA MER1_type -92 97 5 1780 159 3 10 chrX 15804406 15804695 -161169445 - AluJb SINE Alu -25 287 1 584 147 0 29 chrX 15805290 15805392 -161168748 + MER53 DNA DNA 2 100 -89 * 768 154 103 69 chrX 15805384 15805559 -161168581 - MER3 DNA MER1_type -28 181 1 977 193 28 6 chrX 15806069 15806250 -161167890 - MER5A DNA MER1_type -4 185 1 293 299 37 49 chrX 15806536 15806679 -161167461 - MIR SINE MIR -93 115 23 315 0 26 0 chrX 15807008 15807046 -161167094 + L1MB2 LINE L1 6097 6135 -36 2677 146 37 11 chrX 15807612 15807897 -161166243 - L1MA4 LINE L1 0 6482 6179 2397 97 61 19 chrX 15807897 15808257 -161165883 + THE1C LTR MaLR 1 375 0 2677 146 37 11 chrX 15808257 15808436 -161165704 - L1MA4 LINE L1 -303 6179 6006 26 0 0 0 chrX 15808528 15808554 -161165586 + AT_rich Low_complexity Low_complexity 1 26 0 4109 144 9 9 chrX 15808632 15809807 -161164333 - L1MA4 LINE L1 -474 6013 4838 2719 181 26 22 chrX 15809807 15810681 -161163459 - L1MA4 LINE L1 -3685 2643 1769 7122 163 33 4 chrX 15810684 15812207 -161161933 - L1MA4 LINE L1 -4065 1263 118 2163 109 7 0 chrX 15812308 15812591 -161161549 - AluSx SINE Alu -27 285 1 552 240 103 34 chrX 15812893 15813068 -161161072 - MLT1K LTR MaLR -24 564 378 2110 173 41 83 chrX 15813123 15813679 -161160461 - LTR9 LTR ERV1 0 612 80 701 280 73 5 chrX 15813843 15814061 -161160079 + LTR33 LTR ERVL 118 350 -171 3756 133 26 22 chrX 15814063 15814687 -161159453 - L1MB2 LINE L1 -263 5908 5283 2210 117 0 3 chrX 15814967 15815267 -161158873 - AluSx SINE Alu -13 299 1 1185 155 62 0 chrX 15815399 15815593 -161158547 + MER3 DNA MER1_type 4 209 0 1005 220 44 4 chrX 15816147 15816374 -161157766 + MIR SINE MIR 27 262 0 444 273 23 0 chrX 15816573 15816705 -161157435 - LTR16A1 LTR ERVL -2 455 321 22 0 0 30 chrX 15816715 15816728 -161157412 + AT_rich Low_complexity Low_complexity 1 13 -19 1103 32 0 0 chrX 15816728 15816852 -161157288 - L1PA3 LINE L1 0 6155 6032 22 0 0 30 chrX 15816852 15816871 -161157269 + AT_rich Low_complexity Low_complexity 13 32 0 230 271 37 37 chrX 15816879 15816986 -161157154 - LTR16A1 LTR ERVL -142 315 209 650 267 56 6 chrX 15817262 15817442 -161156698 - MER5A DNA MER1_type 0 189 1 1166 215 149 69 chrX 15817716 15817866 -161156274 - LTR16C LTR ERVL 0 491 354 2537 67 0 6 chrX 15817866 15818178 -161155962 + AluSg SINE Alu 1 310 0 1166 215 149 69 chrX 15818178 15818478 -161155662 - LTR16C LTR ERVL -137 354 5 528 342 87 27 chrX 15819733 15820172 -161153968 + L3 LINE CR1 1062 1526 -51 2100 95 9 80 chrX 15820183 15820508 -161153632 - AluSx SINE Alu -10 302 1 237 263 118 0 chrX 15820518 15820594 -161153546 - Charlie4 DNA MER1_type -5 1956 1872 2502 69 3 3 chrX 15820781 15821087 -161153053 - AluSp SINE Alu -7 306 1 359 306 41 25 chrX 15822571 15822692 -161151448 - L2 LINE L2 -18 3254 3132 917 174 132 18 chrX 15823036 15823255 -161150885 - MIR SINE MIR -1 261 18 363 106 39 39 chrX 15823599 15823703 -161150437 + (TTAGGG)n Simple_repeat Simple_repeat 2 105 0 493 231 0 38 chrX 15823733 15823919 -161150221 + (TTAGGG)n Simple_repeat Simple_repeat 1 179 0 747 182 0 0 chrX 15824294 15824415 -161149725 + MER63 DNA MER1_type 942 1062 0 288 0 0 0 chrX 15824759 15824791 -161149349 + (CA)n Simple_repeat Simple_repeat 2 33 0 467 201 0 125 chrX 15824836 15824980 -161149160 - MLT1H LTR MaLR 0 549 424 490 244 42 42 chrX 15825116 15825284 -161148856 - MLT1H LTR MaLR -379 170 3 313 282 57 119 chrX 15825706 15825824 -161148316 + MIR SINE MIR 40 139 -123 2344 103 0 0 chrX 15825824 15826134 -161148006 - AluSg SINE Alu 0 310 1 313 282 57 119 chrX 15826134 15826242 -161147898 + MIR SINE MIR 139 252 -10 426 39 0 0 chrX 15826591 15826643 -161147497 + (CA)n Simple_repeat Simple_repeat 2 53 0 2400 99 0 3 chrX 15827581 15827894 -161146246 - AluSx SINE Alu 0 312 1 5318 171 31 22 chrX 15828378 15828441 -161145699 - L1MB2 LINE L1 0 6171 6110 5806 71 8 1 chrX 15828441 15829157 -161144983 - L1PA10 LINE L1 -1 6167 5447 5318 171 31 22 chrX 15829157 15831010 -161143130 - L1MB2 LINE L1 -61 6110 4235 2385 76 0 0 chrX 15831038 15831327 -161142813 - AluSc SINE Alu -20 289 1 1813 161 7 7 chrX 15832107 15832405 -161141735 - AluJo SINE Alu -14 298 1 592 219 78 0 chrX 15832443 15832571 -161141569 - LTR67 LTR ERVL -11 546 409 2019 119 0 14 chrX 15832705 15833018 -161141122 - AluSx SINE Alu 0 309 1 354 217 12 12 chrX 15833084 15833167 -161140973 + MLT1L LTR MaLR 531 613 -2 232 250 0 0 chrX 15834004 15834060 -161140080 + LTR16A LTR ERVL 2 57 -393 462 291 23 70 chrX 15834165 15834423 -161139717 + LTR16B LTR ERVL 219 464 0 2325 95 7 0 chrX 15834508 15834812 -161139328 - AluSq SINE Alu -7 306 1 294 92 0 4 chrX 15835095 15835142 -161138998 + MADE1 DNA Mariner 1 38 -42 2502 72 3 0 chrX 15835291 15835596 -161138544 + AluSp SINE Alu 1 306 -7 211 200 146 0 chrX 15835702 15835757 -161138383 + MIR SINE MIR 79 141 -121 407 276 144 33 chrX 15835811 15835992 -161138148 - MIR SINE MIR -49 213 13 290 252 20 150 chrX 15837211 15837290 -161136850 + MIR SINE MIR 37 90 -172 1266 224 97 80 chrX 15837290 15837742 -161136398 + LTR16B LTR ERVL 5 464 0 290 252 20 150 chrX 15837742 15837809 -161136331 + MIR SINE MIR 90 164 -98 497 256 62 31 chrX 15837814 15838009 -161136131 - Charlie7 DNA MER1_type -2410 202 2 410 151 68 0 chrX 15838808 15838881 -161135259 - L1MB8 LINE L1 -1 6177 6100 290 30 0 0 chrX 15838881 15838914 -161135226 - U2 snRNA snRNA -155 33 1 263 88 31 7 chrX 15838917 15838958 -161135182 - L1MB7 LINE L1 -67 6113 6067 1563 213 38 45 chrX 15838958 15839358 -161134782 + MLT2C1 LTR ERVL 1 397 0 263 88 31 7 chrX 15839358 15839372 -161134768 - L1MB7 LINE L1 -113 6067 6055 344 339 0 8 chrX 15839577 15839701 -161134439 + L2 LINE L2 3159 3281 -32 2190 157 69 19 chrX 15839706 15840083 -161134057 + MSTD LTR MaLR 1 396 0 560 186 0 10 chrX 15840085 15840187 -161133953 + MSTD-int LTR MaLR 2 102 -1269 846 204 0 0 chrX 15840188 15840340 -161133800 + FAM SINE Alu 1 152 -33 22 35 0 0 chrX 15840342 15840371 -161133769 + AT_rich Low_complexity Low_complexity 1 29 0 5711 204 67 77 chrX 15840371 15841648 -161132492 + MSTD-int LTR MaLR 90 1378 -357 1703 157 11 11 chrX 15841648 15841922 -161132218 + AluJo SINE Alu 1 274 -38 2447 59 3 0 chrX 15841926 15842212 -161131928 - AluSq SINE Alu -17 296 10 5711 204 67 77 chrX 15842212 15842433 -161131707 + MSTD-int LTR MaLR 1381 1578 -157 1829 190 64 19 chrX 15842433 15842806 -161131334 + MSTD LTR MaLR 7 396 0 883 289 93 37 chrX 15842923 15843401 -161130739 + MLT1H LTR MaLR 1 549 0 209 356 17 0 chrX 15843467 15843526 -161130614 - L2 LINE L2 -25 3247 3188 1855 124 19 1 chrX 15843542 15843910 -161130230 + L1MB7 LINE L1 5089 5465 -741 858 195 34 7 chrX 15843905 15844103 -161130037 + L1MA9 LINE L1 6103 6300 0 * 4579 150 27 4 chrX 15844129 15844861 -161129279 + L1MB7 LINE L1 5432 6180 -4 212 301 0 86 chrX 15844862 15844955 -161129185 - MIR SINE MIR -96 112 28 1687 169 49 14 chrX 15845061 15845345 -161128795 - AluJo SINE Alu -18 294 1 384 246 17 60 chrX 15845345 15845413 -161128727 - L1ME4a LINE L1 -234 5887 5818 8884 151 21 14 chrX 15845413 15846608 -161127532 - L1PA15 LINE L1 -7 6158 4972 1946 95 191 35 chrX 15846608 15846923 -161127217 - THE1B LTR MaLR 0 364 1 8884 151 21 14 chrX 15846923 15847231 -161126909 - L1PA15 LINE L1 -1193 4972 4667 2346 88 0 3 chrX 15847231 15847527 -161126613 - AluY SINE Alu -16 295 1 8884 151 21 14 chrX 15847527 15848321 -161125819 - L1PA15 LINE L1 -1498 4667 3847 384 246 17 60 chrX 15848321 15848407 -161125733 - L1ME4a LINE L1 -303 5818 5744 2572 59 0 0 chrX 15848407 15848710 -161125430 - AluY SINE Alu -8 303 1 384 246 17 60 chrX 15848710 15848796 -161125344 - L1ME4a LINE L1 -377 5744 5656 812 190 12 12 chrX 15848822 15848985 -161125155 - L1ME3A LINE L1 0 6170 6008 820 189 11 28 chrX 15849434 15849614 -161124526 - MER5B DNA MER1_type -1 177 1 347 137 14 0 chrX 15851023 15851096 -161123044 + GA-rich Low_complexity Low_complexity 1 74 0 626 229 26 20 chrX 15851149 15851302 -161122838 + MIR SINE MIR 18 171 -91 260 243 162 14 chrX 15851935 15852009 -161122131 + LTR67 LTR ERVL 104 188 -369 933 106 61 0 chrX 15852367 15852499 -161121641 + AluSg/x SINE Alu 155 294 -15 693 272 11 0 chrX 15852575 15852755 -161121385 + MER91A DNA MER1_type 1 182 -14 319 283 29 87 chrX 15853621 15853690 -161120450 + LTR16C LTR ERVL 1 60 -431 2371 88 0 0 chrX 15853690 15853985 -161120155 - AluSx SINE Alu -17 295 1 319 283 29 87 chrX 15853985 15854053 -161120087 + LTR16C LTR ERVL 60 130 -361 882 188 18 18 chrX 15854087 15854248 -161119892 + LTR16C LTR ERVL 275 435 -56 1739 129 23 0 chrX 15854248 15854504 -161119636 - Tigger5 DNA MER2_type 0 2323 2062 305 214 0 0 chrX 15854502 15854558 -161119582 - Tigger5 DNA MER2_type -2261 62 7 * 2094 159 50 14 chrX 15854615 15854974 -161119166 + MSTA LTR MaLR 1 372 -56 382 68 203 0 chrX 15855422 15855481 -161118659 + MSTA LTR MaLR 356 426 0 767 179 0 0 chrX 15855942 15856065 -161118075 + FLAM_A SINE Alu 4 126 -7 2027 166 19 55 chrX 15856075 15856199 -161117941 - L1MA5 LINE L1 -248 6052 5925 886 233 0 0 chrX 15856199 15856371 -161117769 - FAM SINE Alu -3 172 1 2027 166 19 55 chrX 15856371 15856667 -161117473 - L1MA5 LINE L1 -375 5925 5647 245 261 85 15 chrX 15856977 15857107 -161117033 - L1ME4a LINE L1 -13 6108 5970 236 333 54 0 chrX 15857129 15857297 -161116843 - L1ME4a LINE L1 -239 5882 5706 352 279 74 98 chrX 15857416 15857631 -161116509 - L2 LINE L2 -9 3263 3054 540 306 106 13 chrX 15857665 15857966 -161116174 - L2 LINE L2 -168 3145 2817 3789 57 0 11 chrX 15858276 15858529 -161115611 + L1PA8 LINE L1 5700 5947 -225 3506 84 18 12 chrX 15858529 15859019 -161115121 - LTR15 LTR ERV1 0 493 1 3789 57 0 11 chrX 15859019 15859243 -161114897 + L1PA8 LINE L1 5947 6172 0 2349 94 3 0 chrX 15859492 15859791 -161114349 + AluSx SINE Alu 1 300 -12 3611 163 69 7 chrX 15859823 15860643 -161113497 + L1MB7 LINE L1 5143 6013 -171 374 298 149 34 chrX 15860695 15860930 -161113210 + L2 LINE L2 3006 3267 -5 2192 98 31 0 chrX 15861098 15861385 -161112755 - AluSx SINE Alu -15 297 2 23 0 0 0 chrX 15861385 15861408 -161112732 + AT_rich Low_complexity Low_complexity 1 23 0 1685 127 7 73 chrX 15861408 15861708 -161112432 - AluJo SINE Alu -31 281 2 382 232 134 12 chrX 15861716 15861880 -161112260 - MER112 DNA MER1_type -75 185 2 2188 110 13 13 chrX 15862025 15862335 -161111805 - AluSx SINE Alu -2 310 1 404 324 33 29 chrX 15862711 15862850 -161111290 + MIR SINE MIR 14 156 -106 487 101 25 13 chrX 15862850 15862929 -161111211 - MER116 DNA Mariner 0 80 1 404 324 33 29 chrX 15862929 15862999 -161111141 + MIR SINE MIR 156 224 -38 681 275 5 41 chrX 15863371 15863589 -161110551 + MER63A DNA MER1_type 1 210 0 2060 125 17 3 chrX 15864126 15864422 -161109718 + AluJb SINE Alu 1 300 -12 1414 241 93 30 chrX 15864453 15865090 -161109050 + MER20B DNA MER1_type 1 762 -21 2205 98 37 7 chrX 15865090 15865385 -161108755 + AluSx SINE Alu 1 304 -8 1414 241 93 30 chrX 15865385 15865409 -161108731 + MER20B DNA MER1_type 762 783 0 209 250 19 0 chrX 15866117 15866169 -161107971 - L2 LINE L2 -10 3262 3210 702 160 44 138 chrX 15866344 15866436 -161107704 + L1ME3A LINE L1 5961 6060 -110 2094 118 26 9 chrX 15866436 15866782 -161107358 - L1MB2 LINE L1 -2 6169 5818 2430 92 0 3 chrX 15866791 15867096 -161107044 - AluSx SINE Alu -8 304 1 702 160 44 138 chrX 15867096 15867218 -161106922 + L1ME3A LINE L1 6068 6164 -6 2191 136 97 8 chrX 15867272 15867663 -161106477 + MSTB LTR MaLR 1 426 0 2616 89 28 14 chrX 15867980 15868339 -161105801 - THE1B LTR MaLR 0 364 1 926 144 10 101 chrX 15868374 15868582 -161105558 + MER53 DNA DNA 1 189 0 353 302 17 0 chrX 15869626 15869742 -161104398 + MIR3 SINE MIR 82 199 -9 1531 98 5 0 chrX 15869865 15870059 -161104081 + AluSx SINE Alu 1 195 -117 1533 209 44 71 chrX 15871079 15871485 -161102655 - MSTD LTR MaLR -1 395 1 2445 138 99 54 chrX 15871490 15871954 -161102186 + MLT1D LTR MaLR 21 505 0 1144 312 131 31 chrX 15872035 15873310 -161100830 - L2 LINE L2 -26 3246 1860 1907 155 89 3 chrX 15873545 15873881 -161100259 - MLT1A1 LTR MaLR 0 365 1 433 256 17 35 chrX 15875009 15875150 -161098990 - MIR3 SINE MIR -39 169 34 547 244 0 30 chrX 15875230 15875361 -161098779 - MIR SINE MIR -74 188 62 364 199 254 97 chrX 15875985 15876203 -161097937 + L1M4 LINE L1 5483 5734 -450 389 141 14 0 chrX 15876216 15876287 -161097853 + GA-rich Low_complexity Low_complexity 3 74 0 1116 218 127 32 chrX 15876567 15876875 -161097265 + LTR16C LTR ERVL 151 487 -4 2103 143 0 0 chrX 15877347 15877647 -161096493 + AluJb SINE Alu 1 300 -12 2909 107 16 34 chrX 15877986 15878324 -161095816 - MSTB1 LTR MaLR 0 432 102 2589 83 22 19 chrX 15878324 15878687 -161095453 + THE1B LTR MaLR 1 364 0 2909 107 16 34 chrX 15878687 15878788 -161095352 - MSTB1 LTR MaLR -330 102 1 313 156 42 73 chrX 15878837 15878939 -161095201 + MIR SINE MIR 63 164 -44 1320 127 49 118 chrX 15879039 15879204 -161094936 - MER33 DNA MER1_type -2261 324 149 2081 104 60 60 chrX 15879204 15879514 -161094626 - THE1B LTR MaLR 0 364 52 2296 96 10 13 chrX 15879514 15879815 -161094325 - AluSg SINE Alu -10 300 1 2081 104 60 60 chrX 15879815 15879868 -161094272 - THE1B LTR MaLR -311 53 1 1320 127 49 118 chrX 15879868 15879911 -161094229 - MER33 DNA MER1_type -2436 149 105 726 187 0 8 chrX 15879911 15880034 -161094106 + FLAM_A SINE Alu 1 122 -11 1320 127 49 118 chrX 15880034 15880171 -161093969 - MER33 DNA MER1_type -2480 105 2 2194 106 36 0 chrX 15880381 15880682 -161093458 - AluSx SINE Alu 0 312 1 1761 160 0 21 chrX 15881355 15881671 -161092469 - AluJb SINE Alu 0 310 1 351 273 47 7 chrX 15881686 15881836 -161092304 - L1ME4a LINE L1 -216 5905 5750 547 308 58 76 chrX 15882040 15882051 -161092089 - MLT1L LTR MaLR -6 609 599 1883 151 31 0 chrX 15882051 15882342 -161091798 - AluJb SINE Alu -12 300 1 547 308 58 76 chrX 15882342 15882950 -161091190 - MLT1L LTR MaLR -16 599 1 2198 71 0 91 chrX 15883189 15883526 -161090614 + AluSx SINE Alu 1 309 0 240 191 0 0 chrX 15883653 15883700 -161090440 + L1MA3 LINE L1 6259 6305 0 3589 144 20 5 chrX 15883867 15884466 -161089674 + L1MC1 LINE L1 5721 6328 -5 492 252 47 8 chrX 15884495 15884622 -161089518 + MIR SINE MIR 20 151 -111 369 313 117 36 chrX 15884990 15885271 -161088869 - L2 LINE L2 -1 3312 3009 2220 113 7 3 chrX 15885364 15885665 -161088475 + AluSx SINE Alu 1 302 -10 813 222 6 33 chrX 15885683 15885863 -161088277 - MLT1F1 LTR MaLR -2 565 391 243 236 55 0 chrX 15885870 15885925 -161088215 - MLT1E LTR MaLR -145 448 391 258 164 0 0 chrX 15885929 15885984 -161088156 + GA-rich Low_complexity Low_complexity 1 55 0 591 117 7 117 chrX 15886000 15886137 -161088003 - L1MC3 LINE L1 -117 7668 7547 2432 86 0 10 chrX 15886176 15886489 -161087651 - AluSx SINE Alu -2 310 1 1732 75 106 0 chrX 15886512 15886767 -161087373 - L1MA5A LINE L1 -5 6292 6011 884 110 0 0 chrX 15886783 15886910 -161087230 - L1MA5A LINE L1 -4 6293 6167 991 101 0 27 chrX 15886910 15887059 -161087081 - L1MC3 LINE L1 -215 7570 7426 717 172 52 34 chrX 15887059 15887223 -161086917 - MLT1F1 LTR MaLR -394 158 1 213 175 0 0 chrX 15887246 15887286 -161086854 - MER5A DNA MER1_type -84 105 66 2412 97 3 0 chrX 15887286 15887596 -161086544 - AluSp SINE Alu -2 311 1 2416 79 0 0 chrX 15887601 15887893 -161086247 - AluSg SINE Alu -18 292 1 1793 148 0 7 chrX 15887895 15888178 -161085962 - AluJb SINE Alu -6 306 26 438 175 0 12 chrX 15888183 15888263 -161085877 - MER5A DNA MER1_type -110 79 1 2423 65 0 0 chrX 15889090 15889380 -161084760 - AluY SINE Alu -21 290 1 648 208 8 0 chrX 15889748 15889878 -161084262 - FLAM_A SINE Alu -2 131 1 22 56 0 0 chrX 15891373 15891409 -161082731 + AT_rich Low_complexity Low_complexity 1 36 0 435 251 34 75 chrX 15892610 15892785 -161081355 + MIR3 SINE MIR 1 169 -39 1098 170 25 5 chrX 15893732 15893932 -161080208 - MER20B DNA MER1_type -2 217 14 278 276 0 87 chrX 15893980 15894107 -161080033 - MER5B DNA MER1_type -61 117 2 1180 258 64 35 chrX 15894428 15894882 -161079258 - L1MC4a LINE L1 -1870 5938 5472 1305 144 16 70 chrX 15894991 15895248 -161078892 + AluJo SINE Alu 21 263 -49 860 196 55 37 chrX 15895259 15895516 -161078624 - L1MA9 LINE L1 -21 6313 6038 2365 115 0 0 chrX 15895881 15896194 -161077946 + AluSq SINE Alu 1 313 0 2091 42 0 4 chrX 15896449 15896688 -161077452 + L1PA7 LINE L1 5912 6149 -5 267 248 71 14 chrX 15896890 15897031 -161077109 - L1 LINE L1 -3322 2824 2676 410 202 30 30 chrX 15897699 15897798 -161076342 + Charlie5 DNA MER1_type 7 105 -2507 1600 160 96 0 chrX 15897802 15898145 -161075995 + Charlie5 DNA MER1_type 2235 2610 -2 2445 80 3 3 chrX 15898152 15898463 -161075677 - AluSp SINE Alu -2 311 1 2394 88 7 0 chrX 15898570 15898876 -161075264 + AluSc SINE Alu 1 308 -1 2070 121 0 0 chrX 15898903 15899213 -161074927 - AluSx SINE Alu 0 310 1 2263 81 0 0 chrX 15899860 15900190 -161073950 - AluSx SINE Alu 0 330 1 1894 154 0 7 chrX 15900853 15901145 -161072995 + AluJb SINE Alu 3 292 -20 302 214 12 0 chrX 15901145 15901229 -161072911 + GA-rich Low_complexity Low_complexity 1 85 0 1230 204 94 28 chrX 15901696 15902015 -161072125 - MER2 DNA MER2_type 0 345 6 1217 164 23 0 chrX 15902015 15902229 -161071911 - L1MC1 LINE L1 -28 6305 6087 935 178 35 6 chrX 15902231 15902405 -161071735 + MER58A DNA MER1_type 46 224 0 2099 116 0 47 chrX 15903639 15903958 -161070182 + AluSx SINE Alu 1 304 -8 2177 105 10 13 chrX 15904978 15905284 -161068856 + AluSx SINE Alu 1 305 -7 279 218 277 0 chrX 15905362 15905463 -161068677 - MIR SINE MIR -71 191 63 424 318 35 35 chrX 15905897 15906070 -161068070 + MER5B DNA MER1_type 4 176 -2 2314 58 48 0 chrX 15906514 15906807 -161067333 - AluY SINE Alu -4 307 1 2177 128 178 8 chrX 15906984 15907350 -161066790 + MSTA LTR MaLR 1 428 0 283 258 72 21 chrX 15907350 15907447 -161066693 - MIR3 SINE MIR -42 166 65 211 300 171 21 chrX 15907506 15907646 -161066494 - MIR SINE MIR -25 237 77 1953 123 7 3 chrX 15907682 15907966 -161066174 - AluSx SINE Alu -7 305 21 577 294 94 5 chrX 15908258 15908459 -161065681 + MIR SINE MIR 40 258 -4 1888 104 29 14 chrX 15909206 15909485 -161064655 - AluJb SINE Alu -29 283 1 2018 126 17 7 chrX 15909491 15909785 -161064355 - AluSx SINE Alu -15 297 1 242 191 0 0 chrX 15909788 15909830 -161064310 - L2 LINE L2 -15 3298 3257 718 197 5 103 chrX 15910275 15910322 -161063818 - L1MC4 LINE L1 -96 7946 7896 189 0 0 0 chrX 15910322 15910343 -161063797 + (TC)n Simple_repeat Simple_repeat 1 21 0 718 197 5 103 chrX 15910343 15910508 -161063632 - L1MC4 LINE L1 -146 7896 7755 2325 110 0 0 chrX 15910542 15910852 -161063288 + AluSx SINE Alu 1 310 -2 362 244 78 17 chrX 15911283 15911398 -161062742 + HAL1 LINE L1 788 909 -1598 933 254 149 20 chrX 15911505 15911985 -161062155 + MLT1G LTR MaLR 7 528 -62 1856 144 7 3 chrX 15912107 15912391 -161061749 - AluJo SINE Alu -11 301 17 656 131 28 0 chrX 15912808 15912982 -161061158 + L1PA16 LINE L1 5945 6158 -8 887 86 0 0 chrX 15913391 15913507 -161060633 + AluSp/q SINE Alu 194 309 -4 2343 85 0 26 chrX 15913883 15914190 -161059950 + AluSx SINE Alu 1 299 -13 2362 113 0 0 chrX 15914879 15915189 -161058951 + AluSx SINE Alu 1 310 -2 206 289 93 41 chrX 15915246 15915343 -161058797 - L2 LINE L2 -15 3298 3197 764 189 0 8 chrX 15915625 15915752 -161058388 - FLAM_A SINE Alu -6 127 2 346 342 45 7 chrX 15915752 15915907 -161058233 - MIR SINE MIR -56 206 46 765 235 132 15 chrX 15915953 15916225 -161057915 + MER46C DNA MER2_type 1 304 -34 270 281 90 0 chrX 15916393 15916482 -161057658 - L1MC4a LINE L1 -1213 6595 6499 1662 84 0 9 chrX 15916517 15916731 -161057409 + AluSq SINE Alu 11 222 -91 314 45 0 0 chrX 15916731 15916775 -161057365 + AluSq SINE Alu 259 302 0 1823 179 126 29 chrX 15916778 15917149 -161056991 - MER31B LTR ERV1 -5 461 43 1842 123 69 0 chrX 15917149 15917426 -161056714 + AluJb SINE Alu 1 296 -16 1823 179 126 29 chrX 15917426 15917474 -161056666 - MER31B LTR ERV1 -423 43 1 21 0 0 0 chrX 15917653 15917674 -161056466 + AT_rich Low_complexity Low_complexity 1 21 0 566 158 0 0 chrX 15917701 15917783 -161056357 - Tigger5 DNA MER2_type 0 2323 2242 2128 120 7 0 chrX 15917783 15918074 -161056066 + AluSx SINE Alu 1 293 -19 261 222 0 0 chrX 15918120 15918165 -161055975 - Tigger5 DNA MER2_type -2277 46 2 2337 75 10 0 chrX 15918196 15918490 -161055650 + AluY SINE Alu 1 297 -14 439 269 136 13 chrX 15919179 15919347 -161054793 - MIR SINE MIR -50 158 4 1229 254 119 53 chrX 15920897 15921461 -161052679 - MER21B LTR ERV1 -245 618 18 631 191 30 176 chrX 15921610 15921770 -161052370 - L1MC4 LINE L1 -1 8041 7974 222 37 0 0 chrX 15921770 15921797 -161052343 + (CA)n Simple_repeat Simple_repeat 1 27 0 631 191 30 176 chrX 15921797 15922040 -161052100 - L1MC4 LINE L1 -68 7974 7697 207 0 0 0 chrX 15922045 15922068 -161052072 + (T)n Simple_repeat Simple_repeat 1 23 0 2501 71 3 0 chrX 15922248 15922556 -161051584 - AluY SINE Alu -2 309 1 2330 109 0 3 chrX 15922750 15923062 -161051078 - AluSx SINE Alu -1 311 1 471 248 59 45 chrX 15923814 15924059 -161050081 - MLT1K LTR MaLR -178 410 147 513 271 47 16 chrX 15925130 15925259 -161048881 - MIR3 SINE MIR -31 177 45 1485 179 99 43 chrX 15925587 15925911 -161048229 - MER2 DNA MER2_type -1 343 2 373 271 14 75 chrX 15926753 15926908 -161047232 - L1ME4a LINE L1 -296 5825 5683 2075 103 11 4 chrX 15926908 15927215 -161046925 + AluSx SINE Alu 1 309 0 373 271 14 75 chrX 15927215 15927271 -161046869 - L1ME4a LINE L1 -438 5683 5625 303 237 156 65 chrX 15927331 15927517 -161046623 - L1ME4a LINE L1 -2336 5472 5270 2065 92 7 11 chrX 15928074 15928347 -161045793 + AluSg SINE Alu 35 306 -4 2351 136 7 69 chrX 15932140 15932275 -161041865 - L1MB8 LINE L1 -6 6172 6030 2489 93 0 0 chrX 15932275 15932585 -161041555 - AluSg SINE Alu 0 310 1 2351 136 7 69 chrX 15932585 15932897 -161041243 - L1MB8 LINE L1 -148 6030 5753 437 265 75 7 chrX 15932898 15933045 -161041095 + MIR SINE MIR 85 241 -21 24 0 0 0 chrX 15933156 15933180 -161040960 + AT_rich Low_complexity Low_complexity 1 24 0 815 176 123 28 chrX 15933201 15933485 -161040655 + L1MC5 LINE L1 7603 7913 -48 2274 127 140 11 chrX 15933493 15933872 -161040268 - MSTA LTR MaLR 0 428 1 2250 90 3 17 chrX 15934192 15934493 -161039647 - AluSx SINE Alu -15 297 1 249 211 0 0 chrX 15934966 15935023 -161039117 + (CA)n Simple_repeat Simple_repeat 2 58 0 2435 87 0 0 chrX 15937042 15937341 -161036799 + AluSq SINE Alu 1 299 -14 1505 132 0 0 chrX 15938040 15938253 -161035887 + AluSg/x SINE Alu 82 294 -16 28 29 0 0 chrX 15939305 15939340 -161034800 + AT_rich Low_complexity Low_complexity 1 35 0 270 304 13 0 chrX 15940282 15940361 -161033779 + MER5A DNA MER1_type 38 117 -72 2842 153 47 40 chrX 15941796 15942275 -161031865 + L1MB8 LINE L1 5624 6109 -69 2365 88 3 0 chrX 15942275 15942572 -161031568 - AluSq SINE Alu -15 298 1 2842 153 47 40 chrX 15942572 15942643 -161031497 + L1MB8 LINE L1 6109 6178 0 2354 99 0 0 chrX 15942687 15942999 -161031141 - AluSx SINE Alu 0 312 1 2352 77 0 3 chrX 15943676 15943987 -161030153 + AluSx SINE Alu 1 310 0 1060 181 0 0 chrX 15944010 15944181 -161029959 + FRAM SINE Alu 1 167 -9 387 0 0 0 chrX 15944314 15944357 -161029783 + (CA)n Simple_repeat Simple_repeat 1 43 0 757 235 83 95 chrX 15944705 15944843 -161029297 + L1ME4a LINE L1 5304 5442 -679 2405 96 0 0 chrX 15944843 15945146 -161028994 - AluSx SINE Alu -9 303 1 757 235 83 95 chrX 15945146 15945387 -161028753 + L1ME4a LINE L1 5442 5675 -446 1938 168 0 0 chrX 15945387 15945685 -161028455 + AluSx SINE Alu 1 298 -14 757 235 83 95 chrX 15945685 15945913 -161028227 + L1ME4a LINE L1 5675 5904 -217 252 264 23 35 chrX 15945924 15946011 -161028129 + L1ME4a LINE L1 5961 6046 -75 373 280 54 71 chrX 15946254 15946473 -161027667 - L1MC/D LINE L1 -2012 5796 5580 2196 136 0 0 chrX 15946473 15946782 -161027358 + AluJb SINE Alu 1 309 -3 373 280 54 71 chrX 15946782 15946801 -161027339 - L1MC/D LINE L1 -2228 5580 5562 2391 98 0 13 chrX 15948100 15948416 -161025724 + AluSx SINE Alu 1 312 0 2014 175 37 14 chrX 15948485 15948839 -161025301 - MLT1A1 LTR MaLR 0 365 4 461 214 160 15 chrX 15949500 15949631 -161024509 + HAL1 LINE L1 1548 1697 -810 236 132 0 0 chrX 15950160 15950198 -161023942 + HAL1b LINE L1 746 783 -565 * 239 296 106 38 chrX 15950195 15950327 -161023813 + HAL1 LINE L1 2352 2492 -15 2326 91 3 0 chrX 15950352 15950659 -161023481 + AluSx SINE Alu 1 308 -4 382 294 59 17 chrX 15951421 15951540 -161022600 - MIR SINE MIR -82 126 3 183 222 0 0 chrX 15952770 15952815 -161021325 + A-rich Low_complexity Low_complexity 1 45 0 26 74 0 0 chrX 15954112 15954166 -161019974 + AT_rich Low_complexity Low_complexity 1 54 0 298 227 182 11 chrX 15954815 15954903 -161019237 - MIR SINE MIR -61 147 45 2160 103 3 7 chrX 15954972 15955263 -161018877 + AluSx SINE Alu 21 310 -2 190 239 299 45 chrX 15955350 15955484 -161018656 + L2 LINE L2 2917 3084 -188 476 291 130 5 chrX 15955858 15956082 -161018058 - MIR SINE MIR -13 249 15 306 0 0 0 chrX 15956526 15956560 -161017580 + (TG)n Simple_repeat Simple_repeat 1 34 0 2071 98 22 0 chrX 15956560 15956836 -161017304 - AluSx SINE Alu -30 282 1 2263 100 3 3 chrX 15957460 15957760 -161016380 + AluSx SINE Alu 1 300 -12 346 273 0 27 chrX 15958245 15958355 -161015785 - L1MC4a LINE L1 -1913 5895 5789 1206 139 31 76 chrX 15958356 15958579 -161015561 + MER46A DNA MER2_type 3 215 -21 2458 87 0 3 chrX 15958602 15958914 -161015226 - AluSx SINE Alu -1 311 1 2492 133 12 38 chrX 15959765 15960143 -161013997 + L1MB3 LINE L1 5771 6138 -45 1890 135 0 30 chrX 15960143 15960446 -161013694 + AluJo SINE Alu 1 294 -18 2492 133 12 38 chrX 15960446 15960489 -161013651 + L1MB3 LINE L1 6138 6181 -2 521 251 90 59 chrX 15960659 15960699 -161013441 - L1ME4a LINE L1 -16 6105 6068 2346 115 0 0 chrX 15960699 15961011 -161013129 + AluSx SINE Alu 1 312 0 521 251 90 59 chrX 15961011 15961225 -161012915 - L1ME4a LINE L1 -53 6068 5843 1043 123 0 0 chrX 15961233 15961379 -161012761 - AluSg/x SINE Alu -84 228 83 472 189 33 26 chrX 15961379 15961532 -161012608 + GA-rich Low_complexity Low_complexity 3 156 0 497 294 94 39 chrX 15961542 15961902 -161012238 - L1MC4 LINE L1 -565 7477 7098 303 155 10 32 chrX 15962126 15962206 -161011934 - L1ME3A LINE L1 0 6162 6082 * 444 176 219 58 chrX 15962202 15962407 -161011733 - L1ME3 LINE L1 -119 6045 5808 * 672 286 85 48 chrX 15962397 15962584 -161011556 - L1MC4a LINE L1 -891 6917 6738 2239 98 3 49 chrX 15962584 15962909 -161011231 - AluSx SINE Alu -2 310 1 672 286 85 48 chrX 15962909 15963074 -161011066 - L1MC4a LINE L1 -1070 6738 6552 835 166 26 67 chrX 15963902 15963973 -161010167 - L1MB7 LINE L1 -1 6183 6111 2113 107 20 3 chrX 15963973 15964272 -161009868 + AluSx SINE Alu 1 304 -8 835 166 26 67 chrX 15964272 15964393 -161009747 - L1MB7 LINE L1 -73 6111 5999 2373 99 0 3 chrX 15966374 15966687 -161007453 - AluSx SINE Alu 0 312 1 253 158 0 0 chrX 15967392 15967430 -161006710 + MIR SINE MIR 211 248 -14 250 189 38 0 chrX 15967393 15967446 -161006694 + L2 LINE L2 3257 3311 -2 * 841 220 137 73 chrX 15968186 15968640 -161005500 - HAL1b LINE L1 -598 750 268 2081 123 3 0 chrX 15968907 15969225 -161004915 - AluSx SINE Alu 0 319 1 499 287 32 16 chrX 15971231 15971419 -161002721 - L2 LINE L2 -27 3286 3096 390 273 0 66 chrX 15976260 15976381 -160997759 + MER94 DNA DNA 7 119 -15 321 239 56 70 chrX 15976386 15976528 -160997612 + MER5A DNA MER1_type 18 157 -32 241 158 0 0 chrX 15976956 15976994 -160997146 + MIR SINE MIR 114 151 -57 2006 133 0 7 chrX 15976995 15977280 -160996860 + AluJb SINE Alu 3 285 -27 270 0 0 0 chrX 15977280 15977310 -160996830 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1052 156 89 0 chrX 15977892 15978072 -160996068 + MER3 DNA MER1_type 10 205 -4 304 239 217 0 chrX 15978434 15978526 -160995614 + MER5B DNA MER1_type 67 178 0 219 36 0 0 chrX 15979779 15979807 -160994333 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 438 20 0 0 chrX 15980114 15980165 -160993975 + (TG)n Simple_repeat Simple_repeat 1 51 0 2086 98 25 0 chrX 15980171 15980447 -160993693 - AluSg SINE Alu -27 283 1 2410 173 53 25 chrX 15980631 15981117 -160993023 + MLT1D LTR MaLR 6 505 0 2226 86 0 51 chrX 15981632 15981946 -160992194 + AluSx SINE Alu 1 298 -14 288 228 89 0 chrX 15983217 15983296 -160990844 - MIR SINE MIR -85 123 38 2357 112 0 0 chrX 15984511 15984824 -160989316 + AluSq SINE Alu 1 313 0 654 93 43 22 chrX 15984832 15984971 -160989169 + GA-rich Low_complexity Low_complexity 3 144 0 2503 84 3 0 chrX 15988196 15988505 -160985635 - AluSx SINE Alu -2 310 1 356 264 110 81 chrX 15988543 15989035 -160985105 - L2 LINE L2 -1 3312 2807 817 264 83 40 chrX 15989108 15989377 -160984763 - L2 LINE L2 -421 2893 2604 2092 120 3 3 chrX 15989377 15989677 -160984463 + AluSx SINE Alu 1 300 -12 817 264 83 40 chrX 15989677 15989756 -160984384 - L2 LINE L2 -710 2604 2530 245 111 278 0 chrX 15989764 15989818 -160984322 - L1ME1 LINE L1 -3 6163 6095 653 229 98 0 chrX 15992207 15992360 -160981780 + MIR SINE MIR 92 259 -3 2291 102 0 3 chrX 15992535 15992830 -160981310 - AluSx SINE Alu -18 294 1 672 272 60 5 chrX 15992999 15993183 -160980957 + MIR SINE MIR 66 259 -3 477 233 62 52 chrX 15993256 15993449 -160980691 + MIR3 SINE MIR 5 199 -9 28 48 0 0 chrX 15994158 15994200 -160979940 + AT_rich Low_complexity Low_complexity 1 42 0 4056 32 0 0 chrX 15994240 15994706 -160979434 + L1PA7 LINE L1 5669 6134 -20 457 248 64 0 chrX 15995092 15995233 -160978907 + MIR SINE MIR 73 222 -40 909 132 0 0 chrX 15995234 15995363 -160978777 + FLAM_A SINE Alu 3 131 -2 204 139 0 0 chrX 15995441 15995477 -160978663 + MIR SINE MIR 213 248 -14 315 341 77 57 chrX 15995890 15996118 -160978022 + L2 LINE L2 2894 3133 -139 1771 163 57 0 chrX 15996118 15996400 -160977740 + AluJb SINE Alu 1 298 -14 315 341 77 57 chrX 15996400 15996537 -160977603 + L2 LINE L2 3133 3266 -6 301 311 87 66 chrX 15998272 15998558 -160975582 + L2 LINE L2 2979 3270 -2 1432 211 109 54 chrX 15999868 16000347 -160973793 + MLT1F1 LTR MaLR 51 555 -12 379 227 193 13 chrX 16000616 16000766 -160973374 + MER5A DNA MER1_type 13 189 0 1823 149 21 3 chrX 16000854 16001136 -160973004 + AluJo SINE Alu 1 287 -25 241 385 89 0 chrX 16003041 16003210 -160970930 + L3 LINE CR1 1384 1567 -10 192 216 0 0 chrX 16004565 16004602 -160969538 - MIR SINE MIR -70 192 156 201 39 0 0 chrX 16004957 16004983 -160969157 + (TG)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chrX 16005158 16005181 -160968959 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 971 182 101 0 chrX 16005433 16005631 -160968509 - MER20 DNA MER1_type -1 218 1 189 0 0 0 chrX 16005699 16005720 -160968420 + (TTA)n Simple_repeat Simple_repeat 1 21 0 339 220 10 30 chrX 16005766 16005866 -160968274 + MIR SINE MIR 152 249 -13 763 282 13 0 chrX 16006408 16006635 -160967505 - MIR SINE MIR -11 251 22 2395 76 3 3 chrX 16007593 16007895 -160966245 - AluY SINE Alu -9 302 1 2159 121 3 0 chrX 16008235 16008525 -160965615 - AluSx SINE Alu -21 291 1 2399 112 33 0 chrX 16008572 16008937 -160965203 - L1MA6 LINE L1 -6 6294 5918 937 160 1 0 chrX 16008937 16009096 -160965044 + L1MA6 LINE L1 5781 5940 -222 962 277 88 11 chrX 16009190 16009697 -160964443 + L2 LINE L2 2450 3016 -297 1040 81 7 0 chrX 16009711 16009847 -160964293 - AluSp/q SINE Alu -7 306 170 331 259 233 0 chrX 16009850 16010043 -160964097 + L2 LINE L2 3075 3312 -1 26 50 0 0 chrX 16010071 16010111 -160964029 + AT_rich Low_complexity Low_complexity 1 40 0 861 151 0 22 chrX 16010132 16010311 -160963829 + CT-rich Low_complexity Low_complexity 2 176 0 2358 113 0 0 chrX 16010318 16010629 -160963511 - AluSx SINE Alu -1 311 1 421 264 84 39 chrX 16010807 16010962 -160963178 - MER5A DNA MER1_type -23 166 5 335 225 167 10 chrX 16011657 16011773 -160962367 + MIR SINE MIR 3 141 -67 2377 99 0 3 chrX 16012398 16012701 -160961439 + AluSx SINE Alu 1 302 -10 22 0 0 0 chrX 16012761 16012783 -160961357 + AT_rich Low_complexity Low_complexity 1 22 0 2177 137 0 0 chrX 16013110 16013409 -160960731 + AluSx SINE Alu 1 299 -13 2600 64 0 3 chrX 16013912 16014224 -160959916 - AluY SINE Alu 0 311 1 225 234 143 143 chrX 16014260 16014414 -160959726 + MIR SINE MIR 38 191 -71 1527 244 70 38 chrX 16014430 16014929 -160959211 + LTR33 LTR ERVL 6 520 -1 293 326 0 0 chrX 16015580 16015678 -160958462 + L1MC4a LINE L1 5814 5911 -1897 242 271 0 0 chrX 16015716 16015764 -160958376 + polypurine Low_complexity Low_complexity 2 49 0 2423 109 0 0 chrX 16015787 16016100 -160958040 + AluSq SINE Alu 1 313 0 565 126 18 63 chrX 16016111 16016222 -160957918 - MER3 DNA MER1_type -5 204 99 2605 242 51 57 chrX 16016579 16017116 -160957024 - L2 LINE L2 -13 3300 2761 1878 108 35 0 chrX 16017116 16017375 -160956765 - AluSx SINE Alu -15 297 30 2605 242 51 57 chrX 16017375 16017987 -160956153 - L2 LINE L2 -552 2761 2142 473 273 15 8 chrX 16018022 16018154 -160955986 + L2 LINE L2 3181 3313 0 21 0 0 0 chrX 16018211 16018232 -160955908 + AT_rich Low_complexity Low_complexity 1 21 0 1472 253 145 37 chrX 16018248 16018980 -160955160 - L1ME4a LINE L1 -3 6118 5308 2017 137 26 7 chrX 16019063 16019369 -160954771 + AluJb SINE Alu 1 312 0 520 221 12 23 chrX 16019647 16019822 -160954318 + HsTC2 DNA Tc2 2 1894 -4 21 57 0 0 chrX 16019986 16020021 -160954119 + AT_rich Low_complexity Low_complexity 1 35 0 2460 81 0 0 chrX 16020064 16020373 -160953767 - AluY SINE Alu -2 309 1 2275 105 0 0 chrX 16020715 16021001 -160953139 - AluSx SINE Alu -26 286 1 266 86 0 0 chrX 16021281 16021316 -160952824 - U2 snRNA snRNA -152 36 2 351 44 0 0 chrX 16021798 16021843 -160952297 + (CA)n Simple_repeat Simple_repeat 1 45 0 2422 97 0 0 chrX 16022845 16023154 -160950986 + AluSx SINE Alu 1 309 -3 37 0 0 0 chrX 16023202 16023239 -160950901 + AT_rich Low_complexity Low_complexity 1 37 0 2141 117 7 0 chrX 16023470 16023760 -160950380 - AluSx SINE Alu -20 292 1 1373 135 4 52 chrX 16024194 16024424 -160949716 - MER20 DNA MER1_type 0 219 1 2088 101 0 14 chrX 16024485 16024803 -160949337 - AluSx SINE Alu 0 314 1 339 246 77 46 chrX 16025030 16025160 -160948980 - MIR SINE MIR -73 189 56 242 187 9 131 chrX 16025292 16025399 -160948741 - L1MC5 LINE L1 -60 7901 7808 1209 176 9 27 chrX 16025399 16025457 -160948683 - MER20 DNA MER1_type -1 218 160 2343 218 80 13 chrX 16025457 16025984 -160948156 - REP3 LTR ERV 0 562 1 1209 176 9 27 chrX 16025984 16026147 -160947993 - MER20 DNA MER1_type -59 160 1 2440 181 85 93 chrX 16026167 16026264 -160947876 - L1MC5 LINE L1 -200 7761 7665 1683 161 0 25 chrX 16026264 16026549 -160947591 - AluSx SINE Alu -24 288 11 2440 181 85 93 chrX 16026549 16027368 -160946772 - L1MC5 LINE L1 -296 7665 6852 226 227 0 0 chrX 16027450 16027494 -160946646 + MARNA DNA Mariner 412 455 -131 2469 102 0 0 chrX 16027731 16028044 -160946096 - AluSq SINE Alu 0 313 1 613 197 47 8 chrX 16028315 16028442 -160945698 + MER5B DNA MER1_type 43 174 -4 2525 140 34 5 chrX 16028499 16028884 -160945256 + MSTD LTR MaLR 1 396 0 465 289 16 8 chrX 16029318 16029446 -160944694 + MIR SINE MIR 22 150 -112 2690 155 21 56 chrX 16029596 16030112 -160944028 + MLT1D LTR MaLR 1 498 -7 331 206 19 136 chrX 16030477 16030632 -160943508 + L1ME LINE L1 5541 5677 -444 2086 94 87 0 chrX 16031608 16031895 -160942245 + AluSx SINE Alu 1 312 0 2382 69 6 41 chrX 16032286 16032604 -160941536 - AluSq SINE Alu -6 307 1 433 282 80 1 chrX 16033191 16033332 -160940808 - MIR SINE MIR -73 189 40 2280 87 3 20 chrX 16033480 16033779 -160940361 - AluSx SINE Alu -18 294 1 264 310 30 0 chrX 16034274 16034374 -160939766 - MIR SINE MIR -108 154 52 239 268 37 12 chrX 16035076 16035158 -160938982 - L2 LINE L2 -36 3236 3153 206 292 14 0 chrX 16035440 16035512 -160938628 + MIR SINE MIR 20 92 -170 290 248 233 16 chrX 16036092 16036221 -160937919 + MIR SINE MIR 82 238 -24 22 56 0 0 chrX 16036252 16036288 -160937852 + AT_rich Low_complexity Low_complexity 1 36 0 1005 155 0 0 chrX 16036320 16036498 -160937642 - AluSg/x SINE Alu 0 311 134 354 228 18 61 chrX 16037439 16037553 -160936587 - MIR SINE MIR -2 260 152 239 306 60 48 chrX 16038374 16038555 -160935585 + MIR SINE MIR 3 186 -67 1373 135 4 52 chrX 16038661 16038891 -160935249 - MER20 DNA MER1_type 0 219 1 2282 68 4 0 chrX 16038953 16039264 -160934876 - AluY SINE Alu 0 312 1 1036 153 79 10 chrX 16039264 16039467 -160934673 - L1ME1 LINE L1 -56 6110 5894 461 240 52 31 chrX 16039467 16039659 -160934481 - L2 LINE L2 -774 2540 2345 509 271 92 44 chrX 16040324 16040785 -160933355 + L1ME4a LINE L1 5106 5585 -743 478 311 156 16 chrX 16040794 16041218 -160932922 + L1ME4a LINE L1 5634 6116 -5 2349 108 0 0 chrX 16042281 16042588 -160931552 + AluSg SINE Alu 1 307 -3 1744 144 0 62 chrX 16042865 16043170 -160930970 + AluJo SINE Alu 3 288 -24 431 285 8 0 chrX 16043189 16043319 -160930821 - MIR SINE MIR -63 199 69 2166 113 3 17 chrX 16043425 16043716 -160930424 + AluSx SINE Alu 1 287 -25 23 33 0 0 chrX 16043733 16043763 -160930377 + AT_rich Low_complexity Low_complexity 1 30 0 3561 145 78 10 chrX 16043887 16044514 -160929626 + L1MB4 LINE L1 5472 6141 -39 2098 106 7 14 chrX 16044514 16044806 -160929334 + AluSx SINE Alu 1 290 -22 1894 97 0 16 chrX 16045241 16045526 -160928614 + AluSx SINE Alu 41 321 0 279 146 0 0 chrX 16045593 16045648 -160928492 + (CAT)n Simple_repeat Simple_repeat 2 56 0 633 202 0 0 chrX 16045765 16045869 -160928271 + FRAM SINE Alu 11 114 -62 1357 176 0 0 chrX 16045869 16046073 -160928067 + AluJo SINE Alu 85 288 -24 200 121 30 0 chrX 16046334 16046367 -160927773 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 273 119 0 0 chrX 16046367 16046409 -160927731 + (CA)n Simple_repeat Simple_repeat 2 43 0 183 100 0 0 chrX 16046485 16046515 -160927625 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 290 197 28 0 chrX 16047014 16047085 -160927055 + (CATA)n Simple_repeat Simple_repeat 2 74 0 * 849 181 0 0 chrX 16047082 16047259 -160926881 + (CA)n Simple_repeat Simple_repeat 2 178 0 1945 113 4 8 chrX 16047271 16047536 -160926604 - AluSx SINE Alu -25 287 24 2167 137 0 0 chrX 16047986 16048285 -160925855 + AluSx SINE Alu 1 299 -13 7008 205 97 52 chrX 16048741 16048789 -160925351 + Charlie2a DNA MER1_type 5 49 -2813 2556 71 3 0 chrX 16048789 16049098 -160925042 - AluSg SINE Alu 0 310 1 7008 205 97 52 chrX 16049098 16050161 -160923979 + Charlie2a DNA MER1_type 49 1063 -1799 309 26 0 0 chrX 16050161 16050199 -160923941 + (CA)n Simple_repeat Simple_repeat 2 39 0 7008 205 97 52 chrX 16050199 16051564 -160922576 + Charlie2a DNA MER1_type 1063 2690 -172 2012 92 29 25 chrX 16051564 16051883 -160922257 - AluSx SINE Alu 0 320 1 7008 205 97 52 chrX 16051883 16051911 -160922229 + Charlie2a DNA MER1_type 2690 2715 -147 2077 167 78 5 chrX 16051912 16052296 -160921844 + L1MC1 LINE L1 20 431 -5995 6012 164 27 68 chrX 16052324 16052887 -160921253 + L1MC1 LINE L1 4924 5508 -1105 2315 103 0 0 chrX 16052887 16053187 -160920953 + AluSx SINE Alu 1 300 -12 6012 164 27 68 chrX 16053187 16053541 -160920599 + L1MC1 LINE L1 5508 5875 -738 296 103 0 0 chrX 16053541 16053580 -160920560 - tRNA-Cys-TGC tRNA tRNA -34 41 3 6012 164 27 68 chrX 16053580 16054379 -160919761 + L1MC1 LINE L1 5875 6607 -6 451 183 17 128 chrX 16054382 16054462 -160919678 + Charlie2a DNA MER1_type 2698 2750 -112 2054 124 0 0 chrX 16054462 16054780 -160919360 - AluSx SINE Alu 0 318 1 451 183 17 128 chrX 16054780 16054878 -160919262 + Charlie2a DNA MER1_type 2750 2857 -5 1830 232 42 32 chrX 16054891 16055113 -160919027 + MER20B DNA MER1_type 1 219 -564 1962 141 6 35 chrX 16055113 16055426 -160918714 + AluJb SINE Alu 1 304 -8 1830 232 42 32 chrX 16055426 16055677 -160918463 + MER20B DNA MER1_type 219 479 -304 2296 100 0 13 chrX 16055767 16056067 -160918073 - AluSx SINE Alu -16 296 1 1035 217 0 0 chrX 16056221 16056396 -160917744 - FAM SINE Alu 0 175 1 1084 221 82 20 chrX 16057023 16057317 -160916823 + L2 LINE L2 2997 3308 -5 1017 78 31 0 chrX 16057319 16057448 -160916692 + AluSq/x SINE Alu 1 133 -180 2389 92 3 0 chrX 16057451 16057754 -160916386 + AluSg SINE Alu 1 304 -6 2074 113 3 11 chrX 16058258 16058565 -160915575 + AluSx SINE Alu 1 305 0 798 194 145 16 chrX 16059954 16060140 -160914000 - MER63A DNA MER1_type 0 210 1 2394 88 0 0 chrX 16060838 16061133 -160913007 - AluSg SINE Alu -3 307 13 241 186 12 198 chrX 16061368 16061485 -160912655 + HAL1 LINE L1 2371 2450 -57 1919 133 7 7 chrX 16061485 16061770 -160912370 + AluSx SINE Alu 1 285 -27 241 186 12 198 chrX 16061770 16061819 -160912321 + HAL1 LINE L1 2450 2506 -1 1170 194 73 118 chrX 16062417 16062967 -160911173 + L1MC5 LINE L1 7405 7929 -32 2259 181 19 67 chrX 16063193 16063366 -160910774 + MLT1E LTR MaLR 8 188 -405 2295 98 6 16 chrX 16063366 16063682 -160910458 + AluSq SINE Alu 1 313 0 2259 181 19 67 chrX 16063682 16063988 -160910152 + MLT1E LTR MaLR 188 464 -129 1702 190 37 32 chrX 16063991 16064453 -160909687 + L1ME LINE L1 5162 5625 -541 451 217 47 54 chrX 16064652 16064781 -160909359 - MIR SINE MIR -59 203 76 23 54 0 0 chrX 16064997 16065034 -160909106 + AT_rich Low_complexity Low_complexity 1 37 0 376 209 31 110 chrX 16065035 16065226 -160908914 - MER113 DNA MER1_type? -314 207 32 2092 146 7 0 chrX 16065347 16065693 -160908447 + AluJb SINE Alu 1 348 0 858 146 15 0 chrX 16066090 16066220 -160907920 + AluSq/x SINE Alu 1 132 -180 360 55 0 55 chrX 16066587 16066642 -160907498 + MER5A DNA MER1_type 3 54 -135 1283 78 0 0 chrX 16066642 16066796 -160907344 - AluSx SINE Alu -158 154 1 1781 130 4 0 chrX 16067145 16067392 -160906748 - AluSq SINE Alu -17 296 49 336 268 52 0 chrX 16067401 16067498 -160906642 - L2 LINE L2 0 3313 3212 333 299 67 39 chrX 16067574 16067755 -160906385 + MIR SINE MIR 3 186 -67 2460 72 0 13 chrX 16067905 16068212 -160905928 - AluSx SINE Alu -9 303 1 503 254 65 41 chrX 16068270 16068439 -160905701 + MER5A DNA MER1_type 15 187 -2 637 297 89 32 chrX 16068567 16068642 -160905498 + MIR SINE MIR 3 72 -190 1057 171 44 0 chrX 16068642 16068823 -160905317 + MER5A DNA MER1_type 1 189 0 637 297 89 32 chrX 16068823 16068993 -160905147 + MIR SINE MIR 72 262 0 2257 99 0 0 chrX 16069102 16069421 -160904719 - AluSx SINE Alu 0 319 1 472 282 80 1 chrX 16070008 16070149 -160903991 - MIR SINE MIR -73 189 40 2264 87 3 20 chrX 16070297 16070597 -160903543 - AluSx SINE Alu -17 295 1 324 293 36 111 chrX 16070967 16071192 -160902948 - MIR SINE MIR -3 259 52 280 263 61 35 chrX 16071862 16071976 -160902164 - L2 LINE L2 -3 3269 3153 241 271 10 73 chrX 16072234 16072330 -160901810 + MIR SINE MIR 3 92 -170 330 248 233 16 chrX 16072910 16073039 -160901101 + MIR SINE MIR 82 238 -24 22 56 0 0 chrX 16073070 16073106 -160901034 + AT_rich Low_complexity Low_complexity 1 36 0 1015 149 0 0 chrX 16073138 16073316 -160900824 - AluSg/x SINE Alu 0 313 136 186 265 44 29 chrX 16073926 16073994 -160900146 + MIR SINE MIR 40 108 -100 386 228 18 61 chrX 16074257 16074371 -160899769 - MIR SINE MIR -2 260 152 411 21 0 0 chrX 16075036 16075084 -160899056 + (TA)n Simple_repeat Simple_repeat 1 48 0 309 30 0 0 chrX 16075084 16075117 -160899023 - L1PA6 LINE L1 -18 6136 6104 2629 47 7 0 chrX 16075652 16075953 -160898187 - AluY SINE Alu -8 303 1 267 234 143 143 chrX 16075989 16076143 -160897997 + MIR SINE MIR 38 191 -71 1505 246 70 38 chrX 16076159 16076658 -160897482 + LTR33 LTR ERVL 6 520 -1 242 271 0 0 chrX 16077445 16077493 -160896647 + polypurine Low_complexity Low_complexity 2 49 0 2408 109 0 0 chrX 16077516 16077829 -160896311 + AluSq SINE Alu 1 313 0 1255 135 14 34 chrX 16077840 16078048 -160896092 - MER3 DNA MER1_type -5 204 1 2863 246 47 53 chrX 16078479 16079021 -160895119 - L2 LINE L2 -7 3306 2762 1861 108 35 0 chrX 16079021 16079280 -160894860 - AluSx SINE Alu -15 297 30 2863 246 47 53 chrX 16079280 16079892 -160894248 - L2 LINE L2 -551 2762 2142 514 273 15 8 chrX 16079927 16080059 -160894081 + L2 LINE L2 3181 3313 0 21 0 0 0 chrX 16080116 16080137 -160894003 + AT_rich Low_complexity Low_complexity 1 21 0 1538 253 145 37 chrX 16080153 16080885 -160893255 - L1ME4a LINE L1 -3 6118 5308 2000 137 26 7 chrX 16080968 16081274 -160892866 + AluJb SINE Alu 1 312 0 528 221 12 23 chrX 16081552 16081727 -160892413 + HsTC2 DNA Tc2 2 1894 -4 21 57 0 0 chrX 16081891 16081926 -160892214 + AT_rich Low_complexity Low_complexity 1 35 0 2433 81 0 0 chrX 16081969 16082278 -160891862 - AluY SINE Alu -2 309 1 2369 67 0 0 chrX 16082599 16082905 -160891235 - AluY SINE Alu 0 306 1 1201 194 0 28 chrX 16083150 16083367 -160890773 + MER6A DNA MER2_type 4 214 -391 1493 75 5 0 chrX 16083367 16083553 -160890587 + AluSx SINE Alu 1 187 -125 605 67 27 0 chrX 16083553 16083628 -160890512 + AluSx SINE Alu 218 294 -16 1549 132 23 12 chrX 16083630 16083887 -160890253 + MER6A DNA MER2_type 204 463 -142 2957 67 0 97 chrX 16084329 16084611 -160889529 + L1MA4A LINE L1 5882 6190 -113 2431 92 0 0 chrX 16084611 16084917 -160889223 + AluSx SINE Alu 1 306 -6 2957 67 0 97 chrX 16084917 16085075 -160889065 + L1MA4A LINE L1 6190 6278 -25 2104 102 3 3 chrX 16085075 16085358 -160888782 + AluSx SINE Alu 1 283 -29 2957 67 0 97 chrX 16085358 16085378 -160888762 + L1MA4A LINE L1 6278 6298 -5 1053 151 0 0 chrX 16085386 16085545 -160888595 + MER6A DNA MER2_type 447 605 0 * 4713 174 85 52 chrX 16085545 16085607 -160888533 + Charlie7 DNA MER1_type 92 150 -2462 1424 193 54 37 chrX 16085607 16085902 -160888238 - AluJo SINE Alu -12 300 1 4713 174 85 52 chrX 16085902 16086149 -160887991 + Charlie7 DNA MER1_type 150 388 -2224 2238 97 3 0 chrX 16086149 16086464 -160887676 + AluSg SINE Alu 1 316 0 4713 174 85 52 chrX 16086464 16087293 -160886847 + Charlie7 DNA MER1_type 388 1271 -1341 296 237 79 86 chrX 16087964 16088014 -160886126 - L1ME3A LINE L1 -1 6169 6120 2158 116 7 0 chrX 16088014 16088307 -160885833 + AluSx SINE Alu 1 295 -17 296 237 79 86 chrX 16088307 16088395 -160885745 - L1ME3A LINE L1 -50 6120 6032 1513 236 42 20 chrX 16088408 16088790 -160885350 - L1HS LINE L1 -190 5980 5600 2205 90 3 7 chrX 16089043 16089175 -160884965 + AluSx SINE Alu 1 132 -180 189 0 0 0 chrX 16089175 16089196 -160884944 + (TA)n Simple_repeat Simple_repeat 1 21 0 2205 90 3 7 chrX 16089196 16089351 -160884789 + AluSx SINE Alu 132 287 -25 384 292 123 19 chrX 16089371 16089525 -160884615 + MIR SINE MIR 87 256 -6 283 298 68 16 chrX 16090894 16091044 -160883096 - MIR3 SINE MIR -17 191 28 519 288 84 39 chrX 16091342 16091651 -160882489 + L2 LINE L2 1381 1703 -1611 284 298 12 0 chrX 16091678 16091762 -160882378 + GA-rich Low_complexity Low_complexity 1 85 0 344 315 152 4 chrX 16091840 16092097 -160882043 + L2 LINE L2 1804 2098 -1216 444 252 146 56 chrX 16092381 16092622 -160881518 + L2 LINE L2 2186 2404 -910 2265 102 3 0 chrX 16092622 16092916 -160881224 - AluSx SINE Alu -17 295 1 444 252 146 56 chrX 16092916 16093086 -160881054 + L2 LINE L2 2404 2634 -680 418 271 57 0 chrX 16093086 16093226 -160880914 - MER112 DNA MER1_type -85 175 28 1217 152 163 4 chrX 16093275 16093532 -160880608 + MER33 DNA MER1_type 27 324 0 396 0 0 0 chrX 16096133 16096177 -160877963 + (CA)n Simple_repeat Simple_repeat 2 45 0 517 152 0 20 chrX 16096270 16096369 -160877771 + MIR SINE MIR 48 144 -118 2077 120 3 13 chrX 16096466 16096765 -160877375 + AluSx SINE Alu 1 296 -16 232 143 0 0 chrX 16097043 16097085 -160877055 - LTR66 LTR ERVL -171 439 398 689 161 0 51 chrX 16097102 16097220 -160876920 + FLAM_A SINE Alu 6 117 -25 192 40 0 0 chrX 16098162 16098187 -160875953 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 186 148 111 111 chrX 16099865 16099919 -160874221 + L3 LINE CR1 1084 1137 -440 396 274 38 0 chrX 16099983 16100089 -160874051 - MIR SINE MIR -22 240 131 234 0 0 0 chrX 16100137 16100163 -160873977 + (T)n Simple_repeat Simple_repeat 1 26 0 596 189 53 79 chrX 16100295 16100485 -160873655 + MER5A DNA MER1_type 2 186 -3 * 713 204 37 37 chrX 16100337 16100499 -160873641 - MER5A DNA MER1_type -24 165 4 547 196 87 65 chrX 16100989 16101173 -160872967 + MER5A DNA MER1_type 1 188 -1 1887 158 3 7 chrX 16102005 16102309 -160871831 - AluJb SINE Alu -9 303 1 1236 204 109 69 chrX 16102393 16102863 -160871277 + L1ME4a LINE L1 5575 6025 -96 2284 91 3 3 chrX 16102863 16103161 -160870979 + AluSc SINE Alu 1 298 -11 378 0 0 0 chrX 16103161 16103203 -160870937 + (TA)n Simple_repeat Simple_repeat 2 43 0 1236 204 109 69 chrX 16103203 16103223 -160870917 + L1ME4a LINE L1 6025 6043 -78 1851 127 58 0 chrX 16103223 16103498 -160870642 - AluJb SINE Alu -16 296 6 1236 204 109 69 chrX 16103498 16103530 -160870610 + L1ME4a LINE L1 6043 6120 -1 300 301 102 12 chrX 16103878 16103915 -160870225 - MIR SINE MIR -14 248 216 601 44 0 121 chrX 16103915 16103965 -160870175 - MADE1 DNA Mariner 0 80 44 2334 95 0 0 chrX 16103965 16104261 -160869879 + AluSq SINE Alu 1 296 -17 601 44 0 121 chrX 16104261 16104301 -160869839 - MADE1 DNA Mariner -36 44 1 300 301 102 12 chrX 16104301 16104429 -160869711 - MIR SINE MIR -46 216 68 2141 107 3 13 chrX 16104490 16104789 -160869351 + AluSx SINE Alu 1 296 -16 622 77 13 0 chrX 16104822 16104900 -160869240 - MADE1 DNA Mariner -1 79 1 1644 211 61 41 chrX 16104993 16105405 -160868735 + LTR16C LTR ERVL 64 483 -8 2161 118 0 20 chrX 16105441 16105746 -160868394 - AluSx SINE Alu -13 299 1 2447 70 0 19 chrX 16105781 16106095 -160868045 - AluSg SINE Alu -2 308 1 1889 156 10 7 chrX 16106157 16106465 -160867675 + AluJb SINE Alu 1 309 -3 392 314 48 18 chrX 16106781 16106958 -160867182 - MIR3 SINE MIR -69 139 2 2176 124 0 3 chrX 16107189 16107487 -160866653 + AluSx SINE Alu 1 297 -15 1968 72 7 47 chrX 16107564 16107842 -160866298 + AluSq SINE Alu 41 307 -6 2068 94 87 0 chrX 16108233 16108520 -160865620 - AluSx SINE Alu 0 312 1 339 206 19 136 chrX 16109496 16109651 -160864489 - L1ME LINE L1 -444 5677 5541 2718 153 21 56 chrX 16110016 16110532 -160863608 - MLT1D LTR MaLR -7 498 1 505 289 16 8 chrX 16110682 16110810 -160863330 - MIR SINE MIR -112 150 22 2663 140 34 5 chrX 16111244 16111629 -160862511 - MSTD LTR MaLR 0 396 1 656 197 47 8 chrX 16111686 16111813 -160862327 - MER5B DNA MER1_type -4 174 43 2452 102 0 0 chrX 16112084 16112397 -160861743 + AluSq SINE Alu 1 313 0 229 227 0 0 chrX 16112635 16112679 -160861461 - MARNA DNA Mariner -131 455 412 * 232 255 75 43 chrX 16112655 16112749 -160861391 + MARNA DNA Mariner 448 544 -42 2584 185 90 75 chrX 16112761 16113580 -160860560 + L1MC5 LINE L1 6852 7689 -272 1665 170 7 18 chrX 16113580 16113882 -160860258 + AluJb SINE Alu 11 309 0 2584 185 90 75 chrX 16113882 16113957 -160860183 + L1MC5 LINE L1 7689 7761 -200 1218 171 9 27 chrX 16113977 16114140 -160860000 + MER20 DNA MER1_type 1 160 -59 2533 207 82 15 chrX 16114140 16114667 -160859473 + REP3 LTR ERV 1 562 0 1218 171 9 27 chrX 16114667 16114725 -160859415 + MER20 DNA MER1_type 160 218 -1 247 187 9 131 chrX 16114725 16114832 -160859308 + L1MC5 LINE L1 7808 7901 -60 386 261 115 38 chrX 16114964 16115121 -160859019 + MIR SINE MIR 56 224 -38 2058 101 0 14 chrX 16115321 16115639 -160858501 + AluSx SINE Alu 1 314 0 1459 135 4 52 chrX 16115700 16115930 -160858210 + MER20 DNA MER1_type 1 219 0 2121 117 7 0 chrX 16116364 16116654 -160857486 + AluSx SINE Alu 1 292 -20 37 0 0 0 chrX 16116885 16116922 -160857218 + AT_rich Low_complexity Low_complexity 1 37 0 2398 97 0 0 chrX 16116970 16117279 -160856861 - AluSx SINE Alu -3 309 1 351 44 0 0 chrX 16118281 16118326 -160855814 + (TG)n Simple_repeat Simple_repeat 1 45 0 264 86 0 0 chrX 16118808 16118843 -160855297 + U2 snRNA snRNA 2 36 -152 2325 110 0 0 chrX 16119123 16119424 -160854716 + AluSx SINE Alu 1 301 -11 260 245 0 0 chrX 16120183 16120236 -160853904 - L2 LINE L2 -2 3311 3259 1024 134 5 106 chrX 16120832 16120932 -160853208 + MER3 DNA MER1_type 15 83 -126 2179 88 60 0 chrX 16120932 16121215 -160852925 + AluSx SINE Alu 10 309 -3 1024 134 5 106 chrX 16121215 16121331 -160852809 + MER3 DNA MER1_type 83 209 0 311 207 184 23 chrX 16121357 16121444 -160852696 + MIR SINE MIR 48 148 -114 1853 182 0 3 chrX 16121451 16121759 -160852381 + AluJo SINE Alu 5 311 -1 489 76 0 0 chrX 16121761 16121827 -160852313 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 228 277 15 0 chrX 16122126 16122191 -160851949 - Tigger8 DNA MER2_type -591 75 10 2025 133 0 7 chrX 16122648 16122941 -160851199 - AluSx SINE Alu -21 291 1 291 85 0 0 chrX 16122993 16123040 -160851100 + (CAAT)n Simple_repeat Simple_repeat 2 48 0 1811 99 0 0 chrX 16123615 16123847 -160850293 + AluSq SINE Alu 61 292 -21 1721 234 60 6 chrX 16125385 16125934 -160848206 + MLT2E LTR ERVL 1 626 -2 2141 118 7 0 chrX 16126196 16126492 -160847648 - AluSx SINE Alu -14 298 1 2424 93 3 0 chrX 16126514 16126825 -160847315 - AluSp SINE Alu -1 312 1 1342 139 18 0 chrX 16127594 16127817 -160846323 + L1MA5 LINE L1 6072 6298 -2 1648 152 5 3 chrX 16127830 16128216 -160845924 + L1MA4A LINE L1 5833 6280 -23 21 0 0 0 chrX 16128216 16128237 -160845903 + AT_rich Low_complexity Low_complexity 1 21 0 244 238 62 100 chrX 16128344 16128424 -160845716 - MER91A DNA MER1_type -3 193 117 697 276 133 36 chrX 16128706 16129007 -160845133 + MER115 DNA AcHobo 36 365 -328 819 192 132 27 chrX 16129033 16129132 -160845008 + MER115 DNA AcHobo 450 537 -156 456 19 0 0 chrX 16129132 16129185 -160844955 + (TG)n Simple_repeat Simple_repeat 2 54 0 819 192 132 27 chrX 16129185 16129304 -160844836 + MER115 DNA AcHobo 537 691 -2 2384 110 0 0 chrX 16129543 16129853 -160844287 + AluSx SINE Alu 1 310 -2 2358 117 42 28 chrX 16130359 16130718 -160843422 - THE1B LTR MaLR 0 364 1 778 222 98 10 chrX 16130798 16130992 -160843148 + L2 LINE L2 3103 3313 0 936 168 58 0 chrX 16131828 16131983 -160842157 + MLT1A1 LTR MaLR 202 365 0 2582 198 62 63 chrX 16131985 16132335 -160841805 + L1MB2 LINE L1 4563 4912 -1234 2887 148 17 23 chrX 16132335 16132692 -160841448 + L1MB2 LINE L1 5698 6053 -118 2310 55 3 3 chrX 16132692 16132983 -160841157 + AluY SINE Alu 1 291 -20 2887 148 17 23 chrX 16132983 16133099 -160841041 + L1MB2 LINE L1 6053 6168 -3 2582 198 62 63 chrX 16133099 16133553 -160840587 + L1MB2 LINE L1 4912 5366 -780 2055 128 3 3 chrX 16133824 16134121 -160840019 - AluSq SINE Alu -16 297 1 24 0 0 0 chrX 16134330 16134354 -160839786 + AT_rich Low_complexity Low_complexity 1 24 0 1743 227 26 40 chrX 16134432 16134806 -160839334 + L1MCb LINE L1 3 371 -5674 2482 138 5 22 chrX 16134806 16135175 -160838965 - THE1B LTR MaLR -1 363 1 1743 227 26 40 chrX 16135175 16135253 -160838887 + L1MCb LINE L1 371 449 -5596 2243 114 0 3 chrX 16135265 16135563 -160838577 + AluSq SINE Alu 1 297 -16 336 200 143 0 chrX 16135635 16135705 -160838435 + L1MCb LINE L1 486 565 -5480 1848 178 22 38 chrX 16135782 16136227 -160837913 + L1MCb LINE L1 1367 1804 -4760 2093 161 159 13 chrX 16136827 16137362 -160836778 + L1MCb LINE L1 1879 2491 -4073 2154 123 13 0 chrX 16137363 16137671 -160836469 + AluSq SINE Alu 1 312 -1 1674 189 0 34 chrX 16137736 16138061 -160836079 + AluJo SINE Alu 2 316 0 1355 206 45 14 chrX 16138263 16138550 -160835590 + AluJo SINE Alu 1 296 -16 2130 114 24 0 chrX 16138650 16138939 -160835201 - AluSx SINE Alu -16 296 1 475 183 43 0 chrX 16139551 16139644 -160834496 + L2 LINE L2 3215 3311 -2 2407 86 0 10 chrX 16139704 16140007 -160834133 + AluSx SINE Alu 1 300 -12 906 231 53 64 chrX 16140144 16140426 -160833714 - MLT1J LTR MaLR -9 502 224 2517 91 36 8 chrX 16140463 16140793 -160833347 - L1PA15 LINE L1 0 6165 5823 2241 108 0 13 chrX 16140793 16141100 -160833040 - AluSx SINE Alu -7 305 3 2517 91 36 8 chrX 16141100 16141130 -160833010 - L1PA15 LINE L1 -342 5823 5795 236 139 163 0 chrX 16141130 16141173 -160832967 + L1P4 LINE L1 5563 5612 -562 428 288 127 24 chrX 16141394 16141734 -160832406 - L1ME4a LINE L1 -273 5848 5474 750 156 71 21 chrX 16141903 16142044 -160832096 + MER69B DNA AcHobo 1 148 -1078 3224 88 9 93 chrX 16142180 16142518 -160831622 - L1PB1 LINE L1 -39 6112 5836 351 0 0 0 chrX 16142518 16142557 -160831583 + (TG)n Simple_repeat Simple_repeat 1 39 0 3224 88 9 93 chrX 16142557 16142764 -160831376 - L1PB1 LINE L1 -315 5836 5613 266 185 111 0 chrX 16142764 16142818 -160831322 + MER69B DNA AcHobo 124 183 -1043 620 179 154 43 chrX 16142820 16142982 -160831158 + MER63A DNA MER1_type 3 182 -28 * 1901 229 63 91 chrX 16142981 16143176 -160830964 + MER69B DNA AcHobo 182 381 -2145 2244 105 0 0 chrX 16143176 16143470 -160830670 - AluSg SINE Alu -16 294 1 1901 229 63 91 chrX 16143470 16143596 -160830544 + MER69B DNA AcHobo 381 509 -2017 2340 92 0 0 chrX 16143596 16143889 -160830251 + AluSx SINE Alu 1 293 -19 1901 229 63 91 chrX 16143889 16143928 -160830212 + MER69B DNA AcHobo 509 548 -1978 2400 155 3 11 chrX 16143928 16144296 -160829844 - MLT1A1 LTR MaLR 0 365 1 1901 229 63 91 chrX 16144296 16144815 -160829325 + MER69B DNA AcHobo 548 1039 -187 851 252 21 13 chrX 16144876 16145110 -160829030 - L1MC4 LINE L1 -454 7588 7353 23 33 0 0 chrX 16145481 16145511 -160828629 + GC_rich Low_complexity Low_complexity 1 30 0 2091 119 13 3 chrX 16147151 16147454 -160826686 - AluSq SINE Alu -7 306 1 303 372 44 0 chrX 16147498 16147611 -160826529 - L2 LINE L2 0 3272 3155 267 188 87 0 chrX 16147791 16147860 -160826280 - MIR SINE MIR -71 191 117 917 283 111 34 chrX 16147862 16148275 -160825865 - LTR67 LTR ERVL 0 557 113 301 340 54 74 chrX 16148472 16148878 -160825262 + L2 LINE L2 2828 3225 -47 779 292 38 8 chrX 16149142 16149382 -160824758 - Tigger8 DNA MER2_type -5 661 415 288 328 52 9 chrX 16149503 16149619 -160824521 - Tigger8 DNA MER2_type -462 204 84 2356 101 0 0 chrX 16149619 16149915 -160824225 - AluSx SINE Alu -13 299 4 221 328 55 78 chrX 16150248 16150321 -160823819 + L2 LINE L2 3139 3209 -63 2328 97 3 0 chrX 16150321 16150629 -160823511 - AluSq SINE Alu -4 309 1 221 328 55 78 chrX 16150629 16150683 -160823457 + L2 LINE L2 3209 3263 -9 546 254 111 21 chrX 16151889 16152078 -160822062 - MIR SINE MIR -42 220 15 2270 112 0 0 chrX 16152189 16152485 -160821655 - AluSx SINE Alu -16 296 1 2342 103 0 0 chrX 16153111 16153412 -160820728 - AluSq SINE Alu -12 301 1 2193 97 24 0 chrX 16153441 16153730 -160820410 - AluSx SINE Alu -16 296 1 2219 93 3 27 chrX 16153743 16154044 -160820096 - AluSx SINE Alu -17 295 2 562 279 36 12 chrX 16155325 16155490 -160818650 + MIR SINE MIR 24 192 -70 610 246 66 22 chrX 16156745 16156790 -160817350 + MER58C DNA MER1_type 3 45 -2375 964 138 0 7 chrX 16156790 16156935 -160817205 - L1MB8 LINE L1 -9 6169 6026 610 246 66 22 chrX 16156935 16157072 -160817068 + MER58C DNA MER1_type 45 193 -22 2695 229 194 58 chrX 16157222 16158588 -160815552 - L1MC4a LINE L1 -134 7674 6123 368 322 8 8 chrX 16158854 16158972 -160815168 + MIR3 SINE MIR 42 159 -49 203 333 176 0 chrX 16158968 16159070 -160815070 + L2 LINE L2 3151 3270 -2 * 1976 82 26 30 chrX 16159388 16159657 -160814483 + AluSq SINE Alu 1 268 -45 6544 74 15 71 chrX 16160055 16161720 -160812420 - SVA Other Other -518 1386 393 2846 137 71 25 chrX 16161803 16162327 -160811813 - L1MB5 LINE L1 0 6174 5627 2425 72 3 0 chrX 16162341 16162634 -160811506 - AluSg SINE Alu -10 300 7 1823 174 0 3 chrX 16162649 16162960 -160811180 - AluJb SINE Alu -2 310 1 1900 244 147 49 chrX 16162961 16163280 -160810860 - L1MC4a LINE L1 -743 5403 5117 2359 88 7 0 chrX 16163280 16163574 -160810566 - AluSq SINE Alu -17 296 1 1900 244 147 49 chrX 16163574 16163757 -160810383 - L1MC4a LINE L1 -1029 5117 4953 2234 108 0 7 chrX 16163757 16164062 -160810078 - AluSg SINE Alu -7 303 1 1900 244 147 49 chrX 16164062 16164624 -160809516 - L1MC4a LINE L1 -1193 4953 4768 2443 76 0 25 chrX 16164624 16164939 -160809201 - AluSg SINE Alu -3 307 1 1900 244 147 49 chrX 16164939 16164987 -160809153 - L1MC4a LINE L1 -1378 4768 4726 2161 106 7 7 chrX 16165088 16165391 -160808749 - AluSc SINE Alu -6 303 1 2151 79 4 0 chrX 16165830 16166116 -160808024 - AluY SINE Alu 0 303 17 1975 113 10 23 chrX 16166970 16167270 -160806870 - AluSg SINE Alu -14 296 1 243 250 0 0 chrX 16169495 16169567 -160804573 + T-rich Low_complexity Low_complexity 1 72 0 714 255 170 75 chrX 16169835 16170602 -160803538 - L2 LINE L2 -5 3308 2449 278 350 184 0 chrX 16171397 16171614 -160802526 + L2 LINE L2 2397 2653 -661 440 279 98 83 chrX 16171854 16172119 -160802021 + L2 LINE L2 2995 3263 -9 1055 181 29 5 chrX 16172467 16172671 -160801469 - MER3 DNA MER1_type 0 209 1 183 262 0 24 chrX 16172879 16172921 -160801219 - L3 LINE CR1 -13 1564 1524 * 258 280 120 0 chrX 16172889 16172964 -160801176 - MIR3 SINE MIR -26 182 99 916 147 0 0 chrX 16174400 16174529 -160799611 - FLAM_C SINE Alu -4 129 1 2259 117 0 0 chrX 16175356 16175655 -160798485 - AluSg SINE Alu -11 299 1 714 268 64 56 chrX 16176766 16176868 -160797272 + MIR SINE MIR 11 111 -151 2411 85 0 10 chrX 16176868 16177174 -160796966 - AluSx SINE Alu -9 303 1 714 268 64 56 chrX 16177174 16177321 -160796819 + MIR SINE MIR 111 262 0 22 0 0 0 chrX 16177399 16177421 -160796719 + AT_rich Low_complexity Low_complexity 1 22 0 245 290 0 14 chrX 16179195 16179264 -160794876 - Charlie4 DNA MER1_type -11 1950 1883 1077 285 60 54 chrX 16179829 16180368 -160793772 - L1MC5 LINE L1 -35 7926 7381 925 190 112 34 chrX 16180368 16180573 -160793567 + MER58A DNA MER1_type 1 221 -3 1077 285 60 54 chrX 16180573 16180718 -160793422 - L1MC5 LINE L1 -580 7381 7238 1241 152 8 89 chrX 16180842 16181079 -160793061 - MER20 DNA MER1_type -1 218 1 479 255 60 46 chrX 16181096 16181312 -160792828 - L1MC5 LINE L1 -742 7219 7001 21 0 0 0 chrX 16181343 16181364 -160792776 + AT_rich Low_complexity Low_complexity 1 21 0 2003 143 27 0 chrX 16181479 16181772 -160792368 - AluSx SINE Alu -10 302 2 1899 204 60 79 chrX 16181871 16181906 -160792234 + L1MC5 LINE L1 6683 6717 -1244 2285 111 0 22 chrX 16181906 16182222 -160791918 - AluSx SINE Alu -3 309 1 1899 204 60 79 chrX 16182222 16182847 -160791293 + L1MC5 LINE L1 6717 7331 -630 827 244 109 79 chrX 16183060 16183573 -160790567 + L2 LINE L2 2502 3036 -277 2355 92 0 10 chrX 16183589 16183903 -160790237 - AluSx SINE Alu -1 311 1 238 352 89 22 chrX 16185935 16186114 -160788026 - L3 LINE CR1 -151 1426 1236 275 265 205 0 chrX 16186507 16186624 -160787516 + MIR SINE MIR 3 143 -119 334 100 20 0 chrX 16186962 16187012 -160787128 + L1MB2 LINE L1 6105 6155 -16 319 253 167 0 chrX 16189968 16190118 -160784022 - MIR SINE MIR -19 243 69 303 228 109 43 chrX 16190331 16190423 -160783717 - L2 LINE L2 -30 3242 3145 2260 165 70 40 chrX 16192443 16192988 -160781152 + L1MB5 LINE L1 5614 6174 0 2340 122 62 22 chrX 16193069 16193520 -160780620 + SVA Other Other 393 861 -525 444 252 49 24 chrX 16194388 16194511 -160779629 - MIR SINE MIR -70 192 67 1606 183 50 21 chrX 16195771 16196149 -160777991 - L1MB8 LINE L1 -1 6177 5789 289 70 116 0 chrX 16196626 16196669 -160777471 - L3 LINE CR1 -1 1576 1529 186 71 0 0 chrX 16198264 16198292 -160775848 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2252 112 0 0 chrX 16250399 16250695 -160723445 - AluSx SINE Alu -16 296 1 468 296 7 33 chrX 16251490 16251642 -160722498 - MER5B DNA MER1_type -29 149 2 201 304 63 13 chrX 16252821 16252900 -160721240 - L2 LINE L2 -63 3209 3127 1712 131 95 93 chrX 16253102 16253228 -160720912 - MLT1B LTR MaLR 0 390 266 2316 100 0 0 chrX 16253228 16253517 -160720623 - AluSg SINE Alu -21 289 1 1712 131 95 93 chrX 16253517 16253778 -160720362 - MLT1B LTR MaLR -124 266 2 255 134 0 75 chrX 16254126 16254193 -160719947 + (TTTTC)n Simple_repeat Simple_repeat 3 64 0 2471 70 0 0 chrX 16255029 16255327 -160718813 - AluY SINE Alu -13 298 1 23 0 0 0 chrX 16255444 16255467 -160718673 + AT_rich Low_complexity Low_complexity 1 23 0 311 227 140 27 chrX 16255819 16255969 -160718171 + L1ME4a LINE L1 5954 6120 -1 601 229 153 0 chrX 16256123 16256280 -160717860 + MER5A DNA MER1_type 9 189 0 2216 101 0 7 chrX 16256628 16256925 -160717215 + AluSx SINE Alu 1 295 -17 209 167 42 0 chrX 16259682 16259730 -160714410 + T-rich Low_complexity Low_complexity 4 53 0 205 135 54 0 chrX 16259848 16259885 -160714255 + (CTTTG)n Simple_repeat Simple_repeat 5 43 0 199 300 33 0 chrX 16260926 16260986 -160713154 - L2 LINE L2 -219 3053 2992 2028 110 0 21 chrX 16261199 16261490 -160712650 - AluJb SINE Alu -24 288 4 537 185 124 162 chrX 16263475 16263740 -160710400 + MIR SINE MIR 2 256 -6 296 350 0 0 chrX 16263842 16263922 -160710218 + L2 LINE L2 3186 3265 -7 387 221 10 29 chrX 16264103 16264207 -160709933 - MER5B DNA MER1_type -76 102 1 2063 152 0 9 chrX 16265752 16266067 -160708073 - AluJb SINE Alu 0 312 1 217 303 34 76 chrX 16266431 16266550 -160707590 + MIR SINE MIR 41 154 -108 908 299 34 6 chrX 16267669 16267993 -160706147 + MER102b DNA MER1_type 1 333 -8 2415 87 3 0 chrX 16268219 16268528 -160705612 - AluSg SINE Alu 0 310 1 244 356 25 19 chrX 16268535 16268695 -160705445 - MIR SINE MIR -42 220 60 1199 163 5 10 chrX 16268728 16268937 -160705203 + MER3 DNA MER1_type 2 209 0 251 276 11 23 chrX 16269456 16269543 -160704597 - HsTC2 DNA Tc2 -1812 86 1 279 194 0 28 chrX 16270569 16270641 -160703499 + MER116 DNA Mariner 1 70 -10 263 219 122 0 chrX 16271514 16271596 -160702544 - MIR SINE MIR -55 207 116 577 305 190 10 chrX 16271836 16272231 -160701909 - L2 LINE L2 -84 3229 2739 21 36 0 0 chrX 16272769 16272797 -160701343 + AT_rich Low_complexity Low_complexity 1 28 0 196 30 61 0 chrX 16273594 16273627 -160700513 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1737 141 9 53 chrX 16273652 16273971 -160700169 - AluJo SINE Alu -2 310 6 1410 191 38 48 chrX 16274504 16274797 -160699343 + AluJo SINE Alu 1 290 -22 290 123 18 0 chrX 16274806 16274863 -160699277 + (TA)n Simple_repeat Simple_repeat 1 58 0 481 247 13 20 chrX 16275030 16275180 -160698960 - MER103 DNA DNA -3 163 15 249 340 0 0 chrX 16275702 16275799 -160698341 - Charlie8 DNA MER1_type -2225 192 96 470 163 170 7 chrX 16275843 16275978 -160698162 + L1ME4a LINE L1 5501 5657 -513 23 33 0 0 chrX 16276089 16276119 -160698021 + AT_rich Low_complexity Low_complexity 1 30 0 372 246 91 96 chrX 16276256 16276443 -160697697 - L2 LINE L2 -557 2757 2572 371 138 15 0 chrX 16276447 16276512 -160697628 - MER20 DNA MER1_type -5 214 149 208 256 278 36 chrX 16276714 16276937 -160697203 + L2 LINE L2 1695 1971 -1343 331 320 94 17 chrX 16277022 16277256 -160696884 + L1ME4a LINE L1 5764 6015 -106 597 286 88 68 chrX 16277326 16277680 -160696460 + L2 LINE L2 2149 2517 -797 2264 105 0 0 chrX 16277680 16277975 -160696165 + AluSg SINE Alu 1 295 -15 597 286 88 68 chrX 16277975 16278106 -160696034 + L2 LINE L2 2517 2644 -670 816 182 144 52 chrX 16278106 16278403 -160695737 + MER33 DNA MER1_type 1 324 0 308 247 213 33 chrX 16280194 16280344 -160693796 + MER5B DNA MER1_type 2 178 0 21 0 0 0 chrX 16280560 16280581 -160693559 + AT_rich Low_complexity Low_complexity 1 21 0 273 328 112 15 chrX 16280581 16280715 -160693425 - MIR SINE MIR -55 207 61 494 256 134 55 chrX 16280967 16281205 -160692935 - MIR SINE MIR 0 262 6 246 311 33 25 chrX 16283272 16283394 -160690746 - MIR SINE MIR -21 241 119 208 176 94 82 chrX 16285017 16285102 -160689038 - L2 LINE L2 -561 2753 2668 1838 168 30 0 chrX 16285884 16286181 -160687959 + AluJb SINE Alu 1 306 -6 2593 52 0 13 chrX 16286914 16287222 -160686918 + AluY SINE Alu 1 304 -7 2390 88 0 3 chrX 16287423 16287720 -160686420 + AluSg SINE Alu 1 296 -14 3062 110 2 24 chrX 16288138 16288601 -160685539 - L1PA11 LINE L1 0 6174 5722 3255 136 19 3 chrX 16288601 16289188 -160684952 + L1P LINE L1 4789 5384 -762 351 232 69 108 chrX 16289253 16289585 -160684555 - Charlie7 DNA MER1_type -2207 405 87 504 0 0 0 chrX 16290428 16290484 -160683656 + (TTTTA)n Simple_repeat Simple_repeat 1 56 0 2223 88 0 7 chrX 16290484 16290767 -160683373 - AluSq SINE Alu -32 281 1 2135 105 6 37 chrX 16291570 16291893 -160682247 + AluSq SINE Alu 1 313 0 805 151 48 87 chrX 16292663 16292869 -160681271 + MER20 DNA MER1_type 1 198 -21 3637 55 7 2 chrX 16292870 16293326 -160680814 + L1PA8 LINE L1 5714 6171 -1 2356 102 0 0 chrX 16293511 16293806 -160680334 - AluSg SINE Alu -15 295 1 1771 146 45 27 chrX 16293864 16294240 -160679900 - Charlie1b DNA MER1_type -140 383 1 1640 223 53 18 chrX 16294252 16294705 -160679435 + Charlie4a DNA MER1_type 39 507 -1 432 275 88 6 chrX 16295171 16295342 -160678798 - HAL1 LINE L1 0 2507 2323 2068 209 45 45 chrX 16295532 16296136 -160678004 - HAL1 LINE L1 -636 1871 1268 373 230 60 0 chrX 16296217 16296317 -160677823 - HAL1 LINE L1 -1798 709 604 443 271 59 21 chrX 16296437 16296671 -160677469 - HAL1 LINE L1 -2186 321 1 1079 258 16 12 chrX 16297007 16297259 -160676881 - MIR SINE MIR 0 262 10 27 29 0 0 chrX 16301428 16301462 -160672678 + AT_rich Low_complexity Low_complexity 1 34 0 593 228 19 38 chrX 16301600 16301758 -160672382 + L2 LINE L2 3159 3313 0 251 303 11 97 chrX 16301786 16301961 -160672179 + L2 LINE L2 3154 3313 0 2739 26 0 3 chrX 16303151 16303456 -160670684 - AluY SINE Alu -7 304 1 975 197 103 5 chrX 16303676 16303879 -160670261 - MER58A DNA MER1_type 0 224 2 1232 138 153 0 chrX 16304104 16304307 -160669833 + MER46A DNA MER2_type 1 234 -2 2478 81 0 0 chrX 16304386 16304682 -160669458 + AluSp SINE Alu 1 296 -17 414 102 85 0 chrX 16304889 16304948 -160669192 + FRAM SINE Alu 74 137 -39 1133 184 202 4 chrX 16304993 16305221 -160668919 + AluJo SINE Alu 10 282 -30 234 128 0 0 chrX 16305226 16305265 -160668875 + (TA)n Simple_repeat Simple_repeat 2 40 0 1327 272 102 19 chrX 16305416 16305928 -160668212 + MLT1F1 LTR MaLR 3 565 -2 194 277 0 0 chrX 16305981 16306028 -160668112 + L2 LINE L2 3261 3307 -6 2141 119 7 0 chrX 16307182 16307475 -160666665 + AluSx SINE Alu 1 295 -17 1055 139 36 18 chrX 16307918 16308084 -160666056 - AluJb SINE Alu -11 301 133 25 31 0 0 chrX 16308671 16308703 -160665437 + AT_rich Low_complexity Low_complexity 1 32 0 394 179 83 109 chrX 16313099 16313255 -160660885 + MIR SINE MIR 2 153 -55 1244 114 0 0 chrX 16313406 16313582 -160660558 + AluSp SINE Alu 137 312 -1 689 168 8 8 chrX 16315555 16315674 -160658466 + FLAM_A SINE Alu 1 119 -14 307 337 0 22 chrX 16315689 16315781 -160658359 + L1MC4 LINE L1 6614 6703 -1339 * 369 323 10 0 chrX 16315701 16315800 -160658340 - L1MC4 LINE L1 -1339 6703 6604 227 268 0 0 chrX 16316522 16316578 -160657562 + L2 LINE L2 3172 3227 -86 636 222 83 32 chrX 16316959 16317175 -160656965 - Charlie8 DNA MER1_type -2152 265 39 281 159 16 0 chrX 16317807 16317870 -160656270 + CT-rich Low_complexity Low_complexity 1 64 0 345 24 0 0 chrX 16320408 16320450 -160653690 + (CA)n Simple_repeat Simple_repeat 2 43 0 29 78 0 0 chrX 16321116 16321180 -160652960 + GC_rich Low_complexity Low_complexity 1 64 0 240 105 0 0 chrX 16321616 16321647 -160652493 + (TC)n Simple_repeat Simple_repeat 1 34 -4 229 51 51 0 chrX 16321647 16321686 -160652454 + (CA)n Simple_repeat Simple_repeat 1 41 0 240 105 0 0 chrX 16321686 16321692 -160652448 + (TC)n Simple_repeat Simple_repeat 33 38 0 21 0 0 0 chrX 16322483 16322504 -160651636 + AT_rich Low_complexity Low_complexity 1 21 0 242 54 0 27 chrX 16322758 16322795 -160651345 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chrX 16323129 16323151 -160650989 + GC_rich Low_complexity Low_complexity 1 22 0 252 313 25 0 chrX 16323777 16323857 -160650283 + GA-rich Low_complexity Low_complexity 5 86 0 25 51 0 0 chrX 16323965 16324004 -160650136 + GC_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chrX 16325568 16325588 -160648552 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 222 37 0 0 chrX 16325735 16325762 -160648378 + (CGG)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chrX 16325961 16325996 -160648144 + GC_rich Low_complexity Low_complexity 1 35 0 545 249 59 21 chrX 16326227 16326395 -160647745 + MIR SINE MIR 37 208 -54 222 263 132 13 chrX 16326551 16326627 -160647513 - L2 LINE L2 0 3272 3188 231 36 0 0 chrX 16329129 16329157 -160644983 + (CA)n Simple_repeat Simple_repeat 2 29 0 254 308 0 22 chrX 16329266 16329357 -160644783 + CT-rich Low_complexity Low_complexity 4 92 0 299 253 0 0 chrX 16331727 16331822 -160642318 + CT-rich Low_complexity Low_complexity 2 96 0 36 70 0 0 chrX 16332026 16332097 -160642043 + GC_rich Low_complexity Low_complexity 1 71 0 366 115 0 0 chrX 16332133 16332194 -160641946 + (CCG)n Simple_repeat Simple_repeat 3 63 0 260 228 34 13 chrX 16332453 16332702 -160641438 + CT-rich Low_complexity Low_complexity 1 254 0 218 293 37 12 chrX 16332714 16332796 -160641344 + CT-rich Low_complexity Low_complexity 2 85 0 22 56 0 0 chrX 16333381 16333417 -160640723 + AT_rich Low_complexity Low_complexity 1 36 0 180 77 0 0 chrX 16335985 16336011 -160638129 + (TC)n Simple_repeat Simple_repeat 2 27 0 216 0 0 0 chrX 16337136 16337160 -160636980 + (TA)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chrX 16338062 16338095 -160636045 + AT_rich Low_complexity Low_complexity 1 33 0 291 114 0 0 chrX 16340924 16340968 -160633172 + (A)n Simple_repeat Simple_repeat 1 44 0 542 118 11 0 chrX 16342575 16342668 -160631472 + (TTCC)n Simple_repeat Simple_repeat 4 97 0 2245 112 0 7 chrX 16343666 16343961 -160630179 + AluSx SINE Alu 1 293 -19 593 218 68 77 chrX 16343989 16344105 -160630035 - MIR SINE MIR -34 228 113 534 200 18 18 chrX 16344105 16344215 -160629925 - MER81 DNA DNA -1 113 4 593 218 68 77 chrX 16344215 16344318 -160629822 - MIR SINE MIR -149 113 11 301 279 36 57 chrX 16344331 16344471 -160629669 - MIR3 SINE MIR -67 141 5 715 265 81 11 chrX 16345486 16345758 -160628382 - L1ME LINE L1 -347 5774 5484 2225 65 79 10 chrX 16345936 16346227 -160627913 + AluSq SINE Alu 1 311 -2 325 304 80 0 chrX 16346315 16346440 -160627700 + MIR SINE MIR 28 162 -100 2365 100 0 0 chrX 16346527 16346828 -160627312 - AluSx SINE Alu -11 301 1 281 309 81 20 chrX 16346831 16347053 -160627087 - L1ME LINE L1 -429 5692 5485 207 0 0 0 chrX 16347053 16347076 -160627064 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1866 146 4 4 chrX 16347078 16347358 -160626782 - AluJb SINE Alu -31 281 2 281 309 81 20 chrX 16347358 16347477 -160626663 - L1ME LINE L1 -636 5485 5321 372 210 47 37 chrX 16347648 16347770 -160626370 + MLT1J LTR MaLR 55 221 -290 2132 88 4 0 chrX 16349211 16349483 -160624657 - AluSg1 SINE Alu -2 307 35 189 0 0 0 chrX 16349962 16349983 -160624157 + (T)n Simple_repeat Simple_repeat 1 21 0 2292 102 0 0 chrX 16350073 16350393 -160623747 - AluSx SINE Alu 0 320 1 21 0 0 0 chrX 16350393 16350414 -160623726 + AT_rich Low_complexity Low_complexity 1 21 0 2480 90 0 0 chrX 16350914 16351225 -160622915 - AluY SINE Alu 0 311 1 25 51 0 0 chrX 16351261 16351300 -160622840 + AT_rich Low_complexity Low_complexity 1 39 0 231 147 0 0 chrX 16351307 16351341 -160622799 + Alu SINE Alu 257 290 -12 2327 112 3 0 chrX 16351544 16351856 -160622284 - AluSp SINE Alu 0 313 1 225 0 0 0 chrX 16352683 16352708 -160621432 + (A)n Simple_repeat Simple_repeat 1 25 0 2154 104 0 0 chrX 16352711 16352990 -160621150 + AluSg SINE Alu 1 279 -31 189 0 0 0 chrX 16353027 16353048 -160621092 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 518 268 83 13 chrX 16353455 16353612 -160620528 + MLT1H1 LTR MaLR 26 193 -362 513 176 78 161 chrX 16353698 16353891 -160620249 + MLT1H1 LTR MaLR 379 555 0 1193 269 77 29 chrX 16353891 16354334 -160619806 + MLT1J LTR MaLR 38 501 -10 371 320 83 33 chrX 16354444 16354925 -160619215 - L2 LINE L2 -65 3207 2712 940 290 98 22 chrX 16355112 16355478 -160618662 - MLT1J LTR MaLR -47 464 71 279 184 41 0 chrX 16355536 16355585 -160618555 + MER58 DNA MER1_type 195 245 -96 2304 72 9 56 chrX 16358645 16358966 -160615174 - AluSg SINE Alu -4 306 1 2426 117 104 0 chrX 16359259 16359645 -160614495 - MSTB LTR MaLR 0 426 1 1216 277 106 10 chrX 16359921 16360318 -160613822 + MLT1J2 LTR MaLR 1 435 -15 2381 69 0 3 chrX 16360326 16360640 -160613500 - AluSq SINE Alu 0 313 1 2381 93 3 0 chrX 16360710 16361010 -160613130 - AluSp SINE Alu -12 301 1 2395 94 3 0 chrX 16361279 16361578 -160612562 + AluSx SINE Alu 1 300 -12 761 124 283 0 chrX 16361930 16362075 -160612065 - MER5A DNA MER1_type 0 189 4 468 327 193 19 chrX 16362338 16362533 -160611607 - L2 LINE L2 -353 2961 2801 2341 92 3 0 chrX 16362533 16362827 -160611313 - AluSg SINE Alu -15 295 1 468 327 193 19 chrX 16362827 16363227 -160610913 - L2 LINE L2 -513 2801 2262 333 299 89 71 chrX 16363385 16363645 -160610495 - MER102a DNA MER1_type -1087 330 61 2402 96 0 0 chrX 16363645 16363947 -160610193 + AluSx SINE Alu 1 302 -10 333 299 89 71 chrX 16363947 16364010 -160610130 - MER102a DNA MER1_type -1356 61 1 2052 135 0 10 chrX 16364080 16364384 -160609756 + AluJb SINE Alu 1 301 -11 202 211 105 0 chrX 16364410 16364467 -160609673 - L2 LINE L2 -1245 2069 2007 2286 110 0 16 chrX 16364679 16364987 -160609153 + AluSx SINE Alu 5 307 -5 297 23 23 0 chrX 16365282 16365325 -160608815 - L1MA5 LINE L1 0 6300 6257 616 208 0 39 chrX 16365698 16365828 -160608312 + MER94 DNA DNA 7 131 -3 775 199 0 0 chrX 16369939 16370085 -160604055 - L1ME3A LINE L1 -5 6165 6020 312 210 0 0 chrX 16370137 16370199 -160603941 - L1M4 LINE L1 -1577 4569 4508 1909 142 48 3 chrX 16370213 16370502 -160603638 - AluJo SINE Alu -10 302 1 191 36 36 0 chrX 16371071 16371099 -160603041 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1649 163 39 18 chrX 16372751 16372916 -160601224 - AluJo SINE Alu -19 293 118 216 0 0 0 chrX 16372916 16372940 -160601200 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1649 163 39 18 chrX 16372940 16373057 -160601083 - AluJo SINE Alu -194 118 5 1127 199 13 22 chrX 16373249 16373475 -160600665 - MER58A DNA MER1_type 0 224 1 2479 72 3 0 chrX 16373685 16373978 -160600162 + AluSp SINE Alu 1 294 -19 2312 110 49 9 chrX 16374124 16374470 -160599670 - THE1B LTR MaLR 0 364 5 342 253 13 0 chrX 16374683 16374762 -160599378 + MER116 DNA Mariner 1 80 0 982 227 61 153 chrX 16374764 16374968 -160599172 - L1MC5 LINE L1 -142 7900 7679 2191 118 3 0 chrX 16374968 16375256 -160598884 - AluSx SINE Alu -23 289 1 982 227 61 153 chrX 16375256 16375723 -160598417 - L1MC5 LINE L1 -363 7679 7258 2395 112 0 6 chrX 16375804 16376118 -160598022 - AluSx SINE Alu 0 312 1 253 331 61 12 chrX 16376355 16376518 -160597622 - L1M2 LINE L1 -741 5550 5380 21 36 0 0 chrX 16376601 16376629 -160597511 + AT_rich Low_complexity Low_complexity 1 28 0 31 44 0 0 chrX 16376713 16376758 -160597382 + AT_rich Low_complexity Low_complexity 1 45 0 2537 87 0 0 chrX 16376758 16377070 -160597070 - AluSx SINE Alu 0 312 1 253 173 13 27 chrX 16377590 16377665 -160596475 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 814 263 0 32 chrX 16378449 16378696 -160595444 + MIR SINE MIR 20 258 -4 203 274 0 0 chrX 16379089 16379128 -160595012 + CT-rich Low_complexity Low_complexity 5 46 -9 2141 143 26 0 chrX 16379128 16379436 -160594704 - 7SLRNA srpRNA srpRNA -4 316 1 203 274 0 0 chrX 16379436 16379447 -160594693 + CT-rich Low_complexity Low_complexity 45 55 0 508 229 181 19 chrX 16379447 16379657 -160594483 - L1MC5 LINE L1 -36 7925 7682 * 1593 168 32 6 chrX 16379654 16379995 -160594145 - L1MB3 LINE L1 -19 6164 5811 255 215 123 0 chrX 16380326 16380391 -160593749 - L3 LINE CR1 -1 1576 1504 2168 106 0 3 chrX 16380688 16380970 -160593170 - AluSx SINE Alu -31 281 1 685 81 0 30 chrX 16380970 16381069 -160593071 - L1MB4 LINE L1 -309 5871 5776 * 3397 171 59 108 chrX 16381042 16381124 -160593016 - L1MC5 LINE L1 -226 7735 7651 2034 136 48 0 chrX 16381124 16381419 -160592721 - AluSx SINE Alu -3 309 1 3397 171 59 108 chrX 16381419 16381477 -160592663 - L1MC5 LINE L1 -310 7651 7592 2508 82 0 0 chrX 16381477 16381782 -160592358 + AluSx SINE Alu 1 305 -7 3397 171 59 108 chrX 16381782 16381856 -160592284 - L1MC5 LINE L1 -369 7592 7516 4275 96 30 3 chrX 16381856 16382462 -160591678 + L1PA16 LINE L1 5545 6166 0 3397 171 59 108 chrX 16382462 16383373 -160590767 - L1MC5 LINE L1 -445 7516 6663 281 219 0 0 chrX 16383395 16383459 -160590681 - L1ME4a LINE L1 0 6121 6058 829 213 116 104 chrX 16384038 16384451 -160589689 - Charlie2 DNA MER1_type -2 2860 2443 1130 87 11 38 chrX 16584582 16584765 -160389375 - AluSg/x SINE Alu -15 297 120 595 207 9 0 chrX 16584770 16584886 -160389254 - Charlie2a DNA MER1_type -1222 1640 1524 1735 135 6 48 chrX 16584901 16585212 -160388928 + AluJb SINE Alu 1 298 -14 273 119 0 0 chrX 16585243 16585285 -160388855 + (T)n Simple_repeat Simple_repeat 1 42 0 529 200 17 17 chrX 16585657 16585772 -160388368 - Charlie2 DNA MER1_type -2553 309 195 670 153 0 9 chrX 16585776 16585887 -160388253 - FLAM_C SINE Alu -14 129 20 2077 116 0 3 chrX 16585888 16586190 -160387950 + AluSx SINE Alu 1 301 -11 934 129 0 0 chrX 16586291 16586423 -160387717 - FLAM_C SINE Alu -1 132 1 416 294 96 0 chrX 16586435 16586581 -160387559 - Charlie2 DNA MER1_type -2698 164 5 2279 71 3 19 chrX 16586784 16587095 -160387045 + AluSp SINE Alu 1 306 -7 1840 141 30 20 chrX 16587935 16588234 -160385906 + AluJb SINE Alu 1 302 -10 2168 77 3 3 chrX 16588756 16589042 -160385098 + AluSp SINE Alu 1 286 -27 1157 142 19 15 chrX 16589065 16589270 -160384870 - LTR49 LTR ERV1 0 595 390 1250 90 0 11 chrX 16589270 16589448 -160384692 + AluSc SINE Alu 133 308 -1 1799 145 112 22 chrX 16589449 16589814 -160384326 - LTR49 LTR ERV1 -197 398 1 1733 159 3 14 chrX 16590133 16590429 -160383711 + AluJb SINE Alu 2 294 -18 483 212 107 33 chrX 16590455 16590640 -160383500 - MER63 DNA MER1_type 0 1061 1 228 179 0 26 chrX 16590682 16590721 -160383419 + L2 LINE L2 3219 3256 -16 2288 98 0 7 chrX 16590763 16591069 -160383071 + AluSx SINE Alu 2 305 -7 2236 60 0 0 chrX 16591067 16591349 -160382791 + AluY SINE Alu 27 308 -3 * 213 232 18 0 chrX 16591472 16591528 -160382612 + (TTG)n Simple_repeat Simple_repeat 1 57 0 524 251 67 27 chrX 16591775 16591998 -160382142 + L1MC4 LINE L1 6837 7068 -974 815 143 0 0 chrX 16592004 16592123 -160382017 + AluJb SINE Alu 2 120 -192 558 211 72 33 chrX 16592156 16592308 -160381832 + L1MC5 LINE L1 6960 7117 -844 917 120 0 0 chrX 16592325 16592450 -160381690 - FLAM_C SINE Alu -16 127 3 876 199 71 26 chrX 16592452 16592678 -160381462 + L1MC5 LINE L1 7106 7341 -620 2361 75 0 7 chrX 16592794 16593100 -160381040 + AluSx SINE Alu 1 304 -8 2020 129 3 3 chrX 16593588 16593891 -160380249 - AluSx SINE Alu -9 303 1 2520 50 0 0 chrX 16593945 16594246 -160379894 + AluY SINE Alu 1 301 -10 323 244 77 13 chrX 16594248 16594326 -160379814 + MER5B DNA MER1_type 96 178 0 711 244 54 24 chrX 16594464 16594669 -160379471 + MIR SINE MIR 51 261 -1 795 120 0 0 chrX 16594677 16594794 -160379346 - AluSg/x SINE Alu 0 310 194 506 50 0 0 chrX 16594790 16594875 -160379265 + AluSp/q SINE Alu 225 309 0 * 2169 99 0 3 chrX 16595438 16595740 -160378400 - AluSg SINE Alu -7 303 3 1670 156 9 37 chrX 16595770 16596091 -160378049 + AluJo SINE Alu 1 312 0 28 0 0 0 chrX 16596092 16596120 -160378020 + AT_rich Low_complexity Low_complexity 1 28 0 1520 165 60 11 chrX 16597103 16597388 -160376752 + AluJo SINE Alu 1 299 -13 2304 61 0 35 chrX 16597393 16597706 -160376434 + AluY SINE Alu 1 302 -9 2330 55 7 32 chrX 16597999 16598309 -160375831 + AluY SINE Alu 1 302 -9 1917 153 0 0 chrX 16598355 16598650 -160375490 + AluSx SINE Alu 2 296 -16 207 0 0 0 chrX 16600506 16600529 -160373611 + (A)n Simple_repeat Simple_repeat 1 23 0 826 229 149 0 chrX 16602320 16602534 -160371606 + Charlie1 DNA MER1_type 1 246 -2515 440 260 82 111 chrX 16602618 16602790 -160371350 - L1MEc LINE L1 -4461 1754 1630 685 82 122 0 chrX 16602790 16602888 -160371252 - HY1 scRNA scRNA -2 110 1 440 260 82 111 chrX 16602888 16603059 -160371081 - L1MEc LINE L1 -4585 1630 1455 424 198 44 0 chrX 16603076 16603167 -160370973 + Charlie1 DNA MER1_type 159 253 -2508 988 89 0 15 chrX 16603197 16603332 -160370808 - FLAM_C SINE Alu 0 133 1 1757 104 0 12 chrX 16603797 16604056 -160370084 + AluSg SINE Alu 49 304 -6 1955 114 3 23 chrX 16604126 16604432 -160369708 + AluJo SINE Alu 1 300 -12 509 25 51 0 chrX 16604571 16604650 -160369490 + (TA)n Simple_repeat Simple_repeat 2 84 0 1785 112 78 0 chrX 16604650 16604919 -160369221 - AluSx SINE Alu -22 290 1 336 236 14 0 chrX 16604941 16605013 -160369127 - L1MCa LINE L1 -4359 2067 1995 * 426 230 47 0 chrX 16604967 16605065 -160369075 + L1MC4 LINE L1 6571 6646 -1139 207 139 0 0 chrX 16605068 16605104 -160369036 + (TA)n Simple_repeat Simple_repeat 1 36 0 2170 97 3 0 chrX 16605119 16605407 -160368733 - AluSp SINE Alu -24 289 1 1281 131 0 10 chrX 16605409 16605608 -160368532 - AluJo SINE Alu -11 301 105 186 43 0 0 chrX 16605612 16605635 -160368505 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 910 207 83 5 chrX 16605660 16605853 -160368287 - AluJb SINE Alu -89 223 16 252 245 40 146 chrX 16606193 16606246 -160367894 - MIR SINE MIR -38 224 167 2200 102 0 0 chrX 16606246 16606541 -160367599 - AluSx SINE Alu -17 295 1 1931 122 0 45 chrX 16606545 16606713 -160367427 - AluSx SINE Alu -14 298 149 2079 110 10 0 chrX 16606713 16607013 -160367127 - AluSp SINE Alu -10 303 1 1931 122 0 45 chrX 16607013 16607156 -160366984 - AluSx SINE Alu -163 149 1 1615 188 3 7 chrX 16607159 16607451 -160366689 - AluJo SINE Alu -21 291 1 252 245 40 146 chrX 16607451 16607539 -160366601 - MIR SINE MIR -100 162 90 2180 86 10 0 chrX 16607630 16607922 -160366218 - AluSx SINE Alu -17 295 1 1702 150 29 69 chrX 16607940 16608120 -160366020 - L1M3 LINE L1 -513 5658 5472 1428 162 3 81 chrX 16608120 16608453 -160365687 - AluJo SINE Alu -5 307 1 1702 150 29 69 chrX 16608453 16608611 -160365529 - L1M3 LINE L1 -699 5472 5334 1716 154 27 7 chrX 16608611 16608904 -160365236 - AluSx SINE Alu -13 299 1 1702 150 29 69 chrX 16608904 16608943 -160365197 - L1M3 LINE L1 -837 5334 5295 2150 107 3 0 chrX 16608948 16609248 -160364892 - AluSx SINE Alu -10 302 2 297 273 121 10 chrX 16609253 16609352 -160364788 - L2 LINE L2 -14 3258 3149 1270 166 0 0 chrX 16609641 16609840 -160364300 + AluJo SINE Alu 5 203 -109 1813 143 3 44 chrX 16609899 16610063 -160364077 - AluJo SINE Alu -4 308 162 2119 112 0 0 chrX 16610063 16610357 -160363783 + AluSc SINE Alu 1 294 -15 1813 143 3 44 chrX 16610357 16610513 -160363627 - AluJo SINE Alu -150 162 1 1907 137 23 13 chrX 16610821 16611127 -160363013 + AluSx SINE Alu 1 309 -3 354 320 46 26 chrX 16611185 16611338 -160362802 - L2 LINE L2 0 3313 3158 2023 121 6 10 chrX 16612053 16612366 -160361774 + AluSx SINE Alu 1 312 0 266 296 80 0 chrX 16612370 16612458 -160361682 - L2 LINE L2 -20 3252 3158 233 65 0 0 chrX 16612475 16612506 -160361634 - MIR SINE MIR -120 142 112 2067 79 4 4 chrX 16612584 16612861 -160361279 - AluSq SINE Alu -36 277 1 231 196 0 18 chrX 16612864 16612920 -160361220 - L1 LINE L1 -978 5168 5114 988 180 51 0 chrX 16612920 16613098 -160361042 - MLT1E LTR MaLR -406 187 1 432 0 0 0 chrX 16613099 16613147 -160360993 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1715 128 0 58 chrX 16613225 16613421 -160360719 - AluSx SINE Alu -17 295 122 2280 85 0 3 chrX 16613421 16613726 -160360414 - AluSq SINE Alu -9 304 1 1715 128 0 58 chrX 16613726 16613841 -160360299 - AluSx SINE Alu -190 122 2 303 291 107 10 chrX 16613842 16613945 -160360195 - L2 LINE L2 -11 3261 3149 1724 126 53 0 chrX 16614235 16614520 -160359620 + AluSx SINE Alu 5 304 -8 1000 119 0 65 chrX 16614525 16614713 -160359427 + AluSg/x SINE Alu 128 304 0 1793 117 4 4 chrX 16615265 16615530 -160358610 - AluSx SINE Alu -47 265 1 2117 70 7 11 chrX 16615632 16615950 -160358190 + AluSg SINE Alu 1 317 0 1702 59 0 18 chrX 16615950 16616172 -160357968 + AluSc SINE Alu 72 289 -20 7867 163 122 37 chrX 16616472 16618090 -160356050 + MER52A LTR ERV1 1 1755 0 455 78 16 0 chrX 16618481 16618545 -160355595 + MER41A LTR ERV1 400 464 -90 2149 128 0 0 chrX 16618545 16618857 -160355283 + AluSx SINE Alu 1 312 0 582 254 98 29 chrX 16619103 16619308 -160354832 + MIR SINE MIR 38 256 -6 1019 128 0 0 chrX 16619840 16619989 -160354151 - AluSg/x SINE Alu -6 306 158 833 92 0 0 chrX 16619989 16620098 -160354042 - AluSc SINE Alu -198 111 3 350 267 95 0 chrX 16620147 16620263 -160353877 - L2 LINE L2 0 3313 3187 2248 108 0 3 chrX 16620382 16620688 -160353452 + AluSx SINE Alu 1 305 -7 2205 98 0 3 chrX 16620688 16620984 -160353156 + AluSg SINE Alu 1 295 -15 1651 144 31 24 chrX 16620987 16621278 -160352862 + AluJb SINE Alu 1 293 -19 1157 269 43 34 chrX 16621691 16621716 -160352424 - L1ME LINE L1 -402 5760 5737 936 116 12 6 chrX 16621716 16621880 -160352260 + (TTTC)n Simple_repeat Simple_repeat 3 167 0 2049 101 0 3 chrX 16621880 16622161 -160351979 - AluSx SINE Alu -32 280 1 1157 269 43 34 chrX 16622161 16622555 -160351585 - L1ME LINE L1 -425 5737 5348 2047 106 7 7 chrX 16622555 16622856 -160351284 - AluSx SINE Alu -11 301 1 1157 269 43 34 chrX 16622856 16623055 -160351085 - L1ME LINE L1 -814 5348 5135 1793 147 7 3 chrX 16623055 16623347 -160350793 + AluJo SINE Alu 1 293 -19 307 254 58 87 chrX 16623360 16623498 -160350642 - L1ME LINE L1 -3663 2483 2350 2159 96 13 0 chrX 16623515 16623817 -160350323 - AluSq SINE Alu -7 306 1 23 0 0 0 chrX 16623819 16623842 -160350298 + AT_rich Low_complexity Low_complexity 1 23 0 1028 114 13 0 chrX 16623846 16624021 -160350119 - AluJb SINE Alu 0 308 132 2028 96 0 4 chrX 16624029 16624344 -160349796 - AluSg SINE Alu 0 314 1 445 37 0 0 chrX 16625266 16625320 -160348820 + MADE1 DNA Mariner 27 80 0 486 227 106 28 chrX 16625345 16625486 -160348654 + MIR SINE MIR 71 222 -40 2077 123 3 0 chrX 16625523 16625815 -160348325 - AluSx SINE Alu -19 293 1 2017 101 0 17 chrX 16625913 16626235 -160347905 + AluSq SINE Alu 3 319 0 546 186 59 0 chrX 16626706 16626824 -160347316 - MER96B DNA MER1_type? 0 417 293 315 208 0 0 chrX 16626818 16626871 -160347269 - MER96B DNA MER1_type? -364 53 1 * 230 287 168 86 chrX 16627250 16627383 -160346757 + L3 LINE CR1 1150 1271 -306 2101 89 0 4 chrX 16627383 16627689 -160346451 + AluY SINE Alu 1 305 0 230 287 168 86 chrX 16627689 16627821 -160346319 + L3 LINE CR1 1271 1439 -138 1917 139 13 3 chrX 16627878 16628180 -160345960 - AluJb SINE Alu -7 305 1 240 284 159 0 chrX 16628584 16628672 -160345468 + MIR SINE MIR 40 141 -67 1637 140 32 0 chrX 16628694 16628944 -160345196 - AluJb SINE Alu -54 258 1 1949 128 0 33 chrX 16629197 16629503 -160344637 - AluSx SINE Alu -13 299 4 2205 102 3 0 chrX 16629578 16629882 -160344258 - AluSp SINE Alu -8 305 1 1152 306 30 66 chrX 16630115 16630313 -160343827 + HERVL LTR ERVL 4153 4357 -1297 1887 124 7 0 chrX 16630313 16630608 -160343532 - AluSx SINE Alu 0 302 6 1152 306 30 66 chrX 16630608 16630951 -160343189 + HERVL LTR ERVL 4357 4675 -979 1312 162 97 0 chrX 16630965 16631193 -160342947 - MLT1E1 LTR MaLR 0 654 405 2195 107 0 0 chrX 16631221 16631529 -160342611 - AluSx SINE Alu -4 308 1 1070 277 56 56 chrX 16632150 16632576 -160341564 + LTR16B LTR ERVL 2 427 -37 2014 138 0 0 chrX 16632700 16633005 -160341135 - AluSx SINE Alu -7 305 1 2157 130 0 3 chrX 16633051 16633358 -160340782 - AluSq SINE Alu -7 306 1 875 83 33 8 chrX 16633402 16633522 -160340618 - AluSg/x SINE Alu -12 298 176 1412 109 0 0 chrX 16633586 16633779 -160340361 + AluSq SINE Alu 121 313 0 2235 109 3 3 chrX 16633850 16634154 -160339986 - AluSx SINE Alu -8 304 1 233 277 18 62 chrX 16634272 16634384 -160339756 + MLT1K LTR MaLR 164 270 -318 704 130 35 0 chrX 16634601 16634716 -160339424 - MER1B DNA MER1_type -120 177 59 1862 151 17 0 chrX 16634775 16635066 -160339074 - AluSq SINE Alu -17 296 1 1368 288 66 14 chrX 16635270 16635756 -160338384 + MLT1J LTR MaLR 1 511 0 2332 93 7 0 chrX 16636014 16636314 -160337826 + AluSx SINE Alu 5 306 -6 780 230 139 64 chrX 16636337 16636695 -160337445 - MLT1G3 LTR MaLR -33 497 97 2404 106 0 0 chrX 16636695 16636996 -160337144 - AluSx SINE Alu -11 301 1 780 230 139 64 chrX 16636996 16637101 -160337039 - MLT1G3 LTR MaLR -433 97 1 348 295 36 18 chrX 16638021 16638133 -160336007 - L2 LINE L2 0 3313 3200 2232 100 0 0 chrX 16638159 16638464 -160335676 - AluSx SINE Alu 0 305 1 559 165 18 0 chrX 16638655 16638764 -160335376 - MER20 DNA MER1_type -51 168 58 2241 110 0 10 chrX 16639209 16639510 -160334630 - AluSx SINE Alu -14 298 1 1237 146 27 5 chrX 16639921 16640140 -160334000 - L1MB2 LINE L1 -266 5905 5682 2419 85 0 0 chrX 16640162 16640457 -160333683 + AluSc SINE Alu 1 295 -14 532 77 121 0 chrX 16640461 16640552 -160333588 - L1MB8 LINE L1 -11 6167 6066 357 208 94 10 chrX 16640595 16640691 -160333449 + MLT2C1 LTR ERVL 14 117 -280 311 124 0 50 chrX 16640677 16640693 -160333447 + AluSc SINE Alu 118 133 -166 * 2330 88 3 10 chrX 16640693 16641001 -160333139 + AluSx SINE Alu 1 306 -6 311 124 0 50 chrX 16641001 16641051 -160333089 + AluSc SINE Alu 133 170 -129 239 227 155 41 chrX 16641071 16641168 -160332972 + MLT1E3 LTR MaLR 127 234 -390 * 815 219 12 62 chrX 16641095 16641351 -160332789 + MLT2C1 LTR ERVL 153 395 -2 1385 191 102 57 chrX 16641357 16641534 -160332606 - L1MC3 LINE L1 -743 5403 5235 1819 166 25 0 chrX 16641534 16641817 -160332323 - AluJo SINE Alu -22 290 1 1385 191 102 57 chrX 16641817 16642226 -160331914 - L1MC3 LINE L1 -911 5235 4846 2047 133 14 3 chrX 16642226 16642520 -160331620 + AluSx SINE Alu 1 297 -15 1385 191 102 57 chrX 16642520 16642536 -160331604 - L1MC3 LINE L1 -1300 4846 5319 2426 77 0 10 chrX 16642536 16642700 -160331440 - AluSx SINE Alu -15 297 136 2147 109 28 0 chrX 16642700 16642984 -160331156 - AluSx SINE Alu -20 292 1 2426 77 0 10 chrX 16642984 16643119 -160331021 - AluSx SINE Alu -176 136 1 1385 191 102 57 chrX 16643119 16643225 -160330915 - L1MC3 LINE L1 -826 5320 5220 969 149 0 0 chrX 16643239 16643380 -160330760 - FLAM_C SINE Alu -1 142 2 1622 154 85 7 chrX 16643380 16643652 -160330488 - AluJo SINE Alu -19 293 1 751 208 32 74 chrX 16643652 16643868 -160330272 - L1MC3 LINE L1 -943 5203 4997 1240 251 47 73 chrX 16644430 16644695 -160329445 - MER68 LTR ERV1 -37 525 280 2129 126 20 0 chrX 16644695 16644988 -160329152 - AluJb SINE Alu -13 299 1 1240 251 47 73 chrX 16644988 16645257 -160328883 - MER68 LTR ERV1 -282 280 5 2302 78 3 7 chrX 16645390 16645683 -160328457 - AluSx SINE Alu -20 292 1 350 241 12 0 chrX 16645831 16645914 -160328226 - MLT1J LTR MaLR -328 183 100 1819 182 23 7 chrX 16646022 16646329 -160327811 + AluJo SINE Alu 1 312 0 846 121 0 0 chrX 16646339 16646455 -160327685 + FLAM_C SINE Alu 1 116 -17 2448 92 0 0 chrX 16646558 16646864 -160327276 + AluSg SINE Alu 1 306 -4 864 171 0 0 chrX 16646880 16647020 -160327120 + FLAM_C SINE Alu 1 140 -3 24 0 0 0 chrX 16647020 16647044 -160327096 + AT_rich Low_complexity Low_complexity 1 24 0 2272 132 0 0 chrX 16647591 16647901 -160326239 + AluSx SINE Alu 1 310 -2 1942 91 42 4 chrX 16648449 16648712 -160325428 - AluSq SINE Alu -7 306 34 1832 228 101 6 chrX 16648964 16649459 -160324681 + MER34 LTR ERV1 1 542 0 536 177 28 14 chrX 16649523 16649664 -160324476 + CT-rich Low_complexity Low_complexity 4 146 0 2320 101 3 0 chrX 16649678 16649975 -160324165 - AluSq SINE Alu -15 298 1 1937 158 7 3 chrX 16649976 16650274 -160323866 - AluJb SINE Alu -13 299 1 2342 92 0 7 chrX 16650557 16650860 -160323280 - AluSg SINE Alu -9 301 1 2290 47 61 0 chrX 16650869 16651146 -160322994 - AluY SINE Alu -17 294 1 2177 92 58 0 chrX 16651209 16651501 -160322639 - AluSc SINE Alu 0 309 1 347 248 0 35 chrX 16652062 16652203 -160321937 + AluSg/x SINE Alu 167 302 0 1908 116 26 33 chrX 16652239 16652542 -160321598 + AluSx SINE Alu 1 301 -11 270 56 0 0 chrX 16652553 16652589 -160321551 + (TG)n Simple_repeat Simple_repeat 2 37 0 2382 71 0 0 chrX 16652589 16652871 -160321269 - AluSc SINE Alu -27 282 1 2430 70 0 52 chrX 16652945 16653272 -160320868 - AluSg SINE Alu 0 310 1 2375 102 0 0 chrX 16653691 16653996 -160320144 - AluSx SINE Alu -7 305 1 1732 72 0 42 chrX 16654061 16654107 -160320033 + L1M3 LINE L1 5571 5617 -554 1772 189 0 13 chrX 16654107 16654409 -160319731 + AluJo SINE Alu 2 299 -13 1732 72 0 42 chrX 16654409 16654625 -160319515 + L1M3 LINE L1 5617 5822 -349 839 129 8 8 chrX 16654641 16654765 -160319375 + FLAM_C SINE Alu 9 132 -11 2064 141 32 0 chrX 16654765 16655112 -160319028 + L1MB2 LINE L1 5814 6171 0 241 351 27 0 chrX 16655113 16655224 -160318916 - LTR67 LTR ERVL -15 542 429 2191 101 16 29 chrX 16656169 16656476 -160317664 - AluSx SINE Alu -9 303 1 207 0 0 0 chrX 16656557 16656580 -160317560 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 685 147 10 0 chrX 16656580 16656682 -160317458 + AluSg SINE Alu 2 104 -206 265 177 0 0 chrX 16657113 16657175 -160316965 + T-rich Low_complexity Low_complexity 1 62 0 2508 80 0 0 chrX 16657852 16658152 -160315988 - AluSg1 SINE Alu -9 300 1 679 272 34 53 chrX 16658244 16658509 -160315631 + MIR SINE MIR 3 262 0 1728 131 75 11 chrX 16658807 16659074 -160315066 - AluJo SINE Alu -28 284 1 2091 126 3 0 chrX 16659105 16659385 -160314755 + AluSx SINE Alu 1 282 -26 180 0 0 0 chrX 16659385 16659405 -160314735 + (CA)n Simple_repeat Simple_repeat 1 20 0 2471 82 0 0 chrX 16659564 16659867 -160314273 - AluSx SINE Alu -9 303 1 433 231 26 26 chrX 16660146 16660263 -160313877 - MIR3 SINE MIR -41 167 51 2288 84 3 3 chrX 16660273 16660593 -160313547 + AluSp SINE Alu 1 320 0 1741 63 5 18 chrX 16660593 16660814 -160313326 + AluSc SINE Alu 72 289 -20 274 284 0 0 chrX 16662681 16662769 -160311371 - L1MEc LINE L1 -4997 1399 1312 2396 86 0 16 chrX 16662875 16663190 -160310950 - AluY SINE Alu -1 310 1 2395 111 0 0 chrX 16663409 16663715 -160310425 + AluSx SINE Alu 1 306 -6 838 62 15 0 chrX 16664555 16664685 -160309455 + (TGGG)n Simple_repeat Simple_repeat 2 133 0 2191 92 58 0 chrX 16665396 16665688 -160308452 - AluSc SINE Alu 0 309 1 2237 65 7 24 chrX 16665787 16666078 -160308062 - AluY SINE Alu -25 286 1 281 261 0 39 chrX 16666626 16666806 -160307334 + G-rich Low_complexity Low_complexity 2 174 0 675 199 14 28 chrX 16666819 16667241 -160306899 + GA-rich Low_complexity Low_complexity 1 416 0 1845 209 16 16 chrX 16667389 16667763 -160306377 + MLT1A2 LTR MaLR 1 374 0 281 250 5 11 chrX 16668069 16668264 -160305876 + C-rich Low_complexity Low_complexity 1 193 0 2299 105 7 3 chrX 16668533 16668837 -160305303 + AluSx SINE Alu 1 305 -7 1031 207 28 28 chrX 16669948 16670199 -160303941 - AluJo SINE Alu -51 261 11 1075 180 64 9 chrX 16670208 16670441 -160303699 + MLT1A2-int LTR MaLR 1485 1730 -5 385 250 52 0 chrX 16670453 16670549 -160303591 + MLT1A2 LTR MaLR 1 101 -273 423 181 29 14 chrX 16670619 16670757 -160303383 + CT-rich Low_complexity Low_complexity 4 143 0 265 222 5 53 chrX 16670827 16671016 -160303124 + C-rich Low_complexity Low_complexity 1 180 0 1898 272 58 22 chrX 16671221 16671860 -160302280 + L1MEc LINE L1 115 776 -5620 506 243 7 29 chrX 16671897 16672206 -160301934 + C-rich Low_complexity Low_complexity 1 301 0 524 232 40 0 chrX 16672338 16672463 -160301677 - L1MC5 LINE L1 -726 7235 7106 1774 143 49 18 chrX 16672465 16672751 -160301389 + AluJb SINE Alu 3 297 -15 1754 134 0 11 chrX 16674626 16674887 -160299253 + AluJb SINE Alu 40 297 -15 315 292 145 65 chrX 16675195 16675596 -160298544 - L1 LINE L1 -2833 4375 3943 3837 166 52 13 chrX 16675728 16676492 -160297648 - L1 LINE L1 -6374 835 42 1125 274 37 9 chrX 16677280 16677608 -160296532 + L1M2 LINE L1 850 1186 -5663 542 314 13 0 chrX 16677614 16677773 -160296367 - REP3 LTR ERV -376 186 26 1140 230 7 4 chrX 16678241 16678515 -160295625 + L1M2 LINE L1 3262 3536 -3312 7539 167 34 5 chrX 16678632 16679413 -160294727 + L1M2 LINE L1 4155 4912 -1936 192 77 0 0 chrX 16679413 16679439 -160294701 + (CA)n Simple_repeat Simple_repeat 1 26 0 7539 167 34 5 chrX 16679439 16680211 -160293929 + L1M2 LINE L1 4912 5752 -1096 1924 122 3 64 chrX 16680562 16680874 -160293266 - AluSx SINE Alu -19 293 1 414 153 0 0 chrX 16683236 16683295 -160290845 - Alu SINE Alu -18 292 234 686 192 25 94 chrX 16683332 16683535 -160290605 - MLT1C LTR MaLR 0 467 279 851 130 0 0 chrX 16683657 16683795 -160290345 + L1 LINE L1 4695 4832 -1314 2918 125 55 11 chrX 16683845 16684301 -160289839 + L1PA15 LINE L1 5687 6162 -3 2165 238 85 17 chrX 16684302 16685129 -160289011 + L1M4 LINE L1 2786 3668 -2478 1241 212 39 4 chrX 16685642 16685873 -160288267 + MER8 DNA MER2_type 1 239 0 1427 99 28 28 chrX 16686325 16686536 -160287604 + AluSg/x SINE Alu 85 295 -17 2293 149 6 8 chrX 16686537 16686899 -160287241 - MSTA LTR MaLR -67 361 1 2748 138 11 42 chrX 16686899 16687127 -160287013 - L1PB4 LINE L1 -21 6135 5928 2229 116 0 0 chrX 16687127 16687421 -160286719 + AluSg SINE Alu 1 294 -16 2748 138 11 42 chrX 16687421 16687670 -160286470 - L1PB4 LINE L1 -228 5928 5673 196 288 25 50 chrX 16687794 16687874 -160286266 - MER5B DNA MER1_type -98 80 3 2331 73 0 17 chrX 16689070 16689371 -160284769 - AluY SINE Alu -15 296 1 777 175 0 0 chrX 16689382 16689502 -160284638 - L1PB4 LINE L1 -8 6148 6029 36059 49 3 3 chrX 16689602 16694823 -160279317 + L1PA5 LINE L1 933 6148 -6 300 281 21 0 chrX 16694924 16695020 -160279120 - L1ME LINE L1 -278 5843 5746 2505 53 0 3 chrX 16695439 16695739 -160278401 + AluY SINE Alu 1 299 -12 859 138 31 0 chrX 16695752 16695882 -160278258 + AluJb SINE Alu 164 297 -15 438 92 15 0 chrX 16695886 16695951 -160278189 + L1PA16 LINE L1 6083 6148 -18 496 122 0 0 chrX 16695966 16696040 -160278100 + L1PB4 LINE L1 6078 6151 -5 3949 36 0 0 chrX 16696593 16697036 -160277104 - L1PA5 LINE L1 -4 6150 5708 1950 162 0 3 chrX 16697421 16697711 -160276429 + AluJb SINE Alu 1 289 -23 1083 270 20 20 chrX 16699896 16700192 -160273948 - REP3 LTR ERV -266 296 1 5090 148 40 15 chrX 16700857 16701594 -160272546 + L1MA9 LINE L1 5407 6171 -141 240 35 0 0 chrX 16701594 16701623 -160272517 + (CA)n Simple_repeat Simple_repeat 2 30 0 5090 148 40 15 chrX 16701623 16701761 -160272379 + L1MA9 LINE L1 6171 6304 -8 1951 143 43 70 chrX 16702168 16702566 -160271574 + MLT1B LTR MaLR 1 387 -3 960 133 78 0 chrX 16702713 16702879 -160271261 + L1MA9 LINE L1 5917 6095 -217 2471 72 0 16 chrX 16703873 16704179 -160269961 + AluSp SINE Alu 1 301 -12 19539 43 2 0 chrX 16705235 16708271 -160265869 - L1PA5 LINE L1 -6 6148 3111 1353 126 0 0 chrX 16708373 16708571 -160265569 - L1P4 LINE L1 -399 5767 5570 301 91 0 0 chrX 16708572 16708616 -160265524 + L1MA1 LINE L1 6153 6196 -106 3823 159 11 37 chrX 16709288 16709449 -160264691 - L1MA4A LINE L1 -24 6279 6115 2317 88 7 0 chrX 16709449 16709745 -160264395 - AluSg SINE Alu -12 298 1 3823 159 11 37 chrX 16709745 16710396 -160263744 - L1MA4A LINE L1 -188 6115 5427 1689 130 78 82 chrX 16710396 16710810 -160263330 + THE1B LTR MaLR 1 389 -39 2186 115 0 3 chrX 16710810 16711106 -160263034 - AluSx SINE Alu -17 295 1 1689 130 78 82 chrX 16711106 16711146 -160262994 + THE1B LTR MaLR 389 428 0 1660 137 31 0 chrX 16711146 16711528 -160262612 - L1M1 LINE L1 -743 5403 5042 297 367 48 5 chrX 16711707 16711914 -160262226 + MIR SINE MIR 19 234 -28 180 286 82 0 chrX 16712753 16712802 -160261338 - L2 LINE L2 -253 3060 3008 2171 102 3 3 chrX 16713265 16713580 -160260560 + AluSx SINE Alu 1 315 0 637 53 11 21 chrX 16713993 16714088 -160260052 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 506 179 42 11 chrX 16714091 16714186 -160259954 - MLT1B LTR MaLR -46 459 362 * 659 136 45 9 chrX 16714181 16714291 -160259849 - MLT1D LTR MaLR -17 488 375 869 85 0 0 chrX 16714298 16714404 -160259736 + AluSq/x SINE Alu 5 110 -203 880 271 9 18 chrX 16715150 16715371 -160258769 + REP3 LTR ERV 1 219 -343 23 0 0 0 chrX 16715625 16715648 -160258492 + AT_rich Low_complexity Low_complexity 1 23 0 380 340 0 7 chrX 16715768 16715915 -160258225 - L1M4c LINE L1 -6176 208 63 814 165 8 0 chrX 16717230 16717363 -160256777 - AluJo SINE Alu -178 134 1 2991 68 3 3 chrX 16719063 16719418 -160254722 - THE1A LTR MaLR 0 355 1 425 276 8 8 chrX 16721902 16722029 -160252111 - L1M4c LINE L1 -6225 159 33 446 312 51 13 chrX 16722064 16722301 -160251839 - Charlie2 DNA MER1_type -2567 295 50 2278 104 3 0 chrX 16722727 16723026 -160251114 - AluSx SINE Alu -12 300 1 1851 159 16 29 chrX 16724244 16724552 -160249588 - AluJo SINE Alu -7 305 2 700 130 19 0 chrX 16724621 16724729 -160249411 - L1MA6 LINE L1 0 6300 6191 1165 195 17 17 chrX 16725171 16725407 -160248733 + MLT1F LTR MaLR 256 491 -51 4453 181 41 5 chrX 16725425 16726507 -160247633 - L1MB7 LINE L1 -41 6143 5025 241 290 65 32 chrX 16726519 16726674 -160247466 - Charlie2 DNA MER1_type -2652 210 51 2016 107 0 40 chrX 16727023 16727323 -160246817 - AluSx SINE Alu -24 288 1 2245 50 0 0 chrX 16727696 16727957 -160246183 - AluY SINE Alu -50 261 1 865 247 34 84 chrX 16729258 16729578 -160244562 - MLT1B LTR MaLR -86 304 1 1057 283 14 11 chrX 16730473 16730749 -160243391 + REP3 LTR ERV 26 302 -260 2298 108 0 3 chrX 16731389 16731695 -160242445 + AluSx SINE Alu 1 305 -7 4811 135 23 61 chrX 16732066 16732656 -160241484 - LTR39 LTR ERV1 0 783 230 1839 158 0 3 chrX 16732656 16732978 -160241162 - AluJb SINE Alu 0 321 1 4811 135 23 61 chrX 16732978 16733200 -160240940 - LTR39 LTR ERV1 -553 230 1 276 309 47 40 chrX 16734331 16734480 -160239660 + MER70-int LTR ERVL 1936 2085 -2938 2050 120 7 0 chrX 16735507 16735783 -160238357 + AluSc SINE Alu 1 278 -31 345 100 0 0 chrX 16735785 16735835 -160238305 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 330 287 60 46 chrX 16736929 16737033 -160237107 - Charlie2 DNA MER1_type -2516 266 165 2533 85 47 49 chrX 16737033 16737398 -160236742 + THE1B LTR MaLR 1 364 0 330 287 60 46 chrX 16737398 16737509 -160236631 - Charlie2 DNA MER1_type -2617 165 48 6375 104 23 2 chrX 16737823 16738733 -160235407 - L1P LINE L1 -5217 929 1 962 349 137 30 chrX 16738888 16739116 -160235024 - L2 LINE L2 -1804 1510 1308 1796 181 42 25 chrX 16739116 16739475 -160234665 + MLT1A1 LTR MaLR 1 365 0 962 349 137 30 chrX 16739475 16740257 -160233883 - L2 LINE L2 -2006 1308 392 216 368 0 0 chrX 16740350 16740437 -160233703 + MIR3 SINE MIR 104 190 -18 448 220 70 86 chrX 16740953 16741139 -160233001 - MER112 DNA MER1_type 0 260 78 202 185 19 19 chrX 16741141 16741195 -160232945 + (TA)n Simple_repeat Simple_repeat 1 54 0 420 198 12 0 chrX 16741196 16741277 -160232863 - MER112 DNA MER1_type -176 84 3 517 305 85 50 chrX 16741383 16741642 -160232498 - MLT1I LTR MaLR -38 371 104 264 30 0 0 chrX 16742721 16742754 -160231386 + (TG)n Simple_repeat Simple_repeat 1 33 0 204 354 44 18 chrX 16743323 16743436 -160230704 - MIR3 SINE MIR -14 194 79 484 116 0 14 chrX 16743436 16743505 -160230635 - AluJ/FRAM SINE Alu -17 295 228 551 265 34 16 chrX 16743651 16743812 -160230328 + L1ME2 LINE L1 6010 6169 -1 9716 157 13 6 chrX 16743842 16744829 -160229311 + L1PB1 LINE L1 3400 4378 -1773 549 0 0 0 chrX 16744829 16744890 -160229250 + (TAAAA)n Simple_repeat Simple_repeat 2 62 0 9716 157 13 6 chrX 16744890 16746625 -160227515 + L1PB1 LINE L1 4378 6144 -7 6669 92 33 2 chrX 16748453 16749403 -160224737 - L1MA2 LINE L1 0 6304 5326 1244 181 49 86 chrX 16752965 16753290 -160220850 + MLT1B LTR MaLR 78 390 0 763 43 0 0 chrX 16753658 16753752 -160220388 - L1P LINE L1 -3183 2963 2870 * 20650 73 6 0 chrX 16753749 16756400 -160217740 - L1P LINE L1 -3481 2665 1 535 139 0 0 chrX 16756423 16756509 -160217631 - L1MA4 LINE L1 0 6300 6215 2278 100 0 3 chrX 16759141 16759440 -160214700 + AluSq SINE Alu 1 298 -15 329 340 93 19 chrX 16759907 16760069 -160214071 - HERVL40 LTR ERVL -1848 3682 3509 2172 120 0 0 chrX 16760287 16760578 -160213562 + AluSg SINE Alu 1 291 -19 2224 129 0 0 chrX 16761553 16761856 -160212284 + AluJb SINE Alu 1 303 -9 2292 43 47 0 chrX 16761915 16762194 -160211946 + AluY SINE Alu 16 307 -4 859 167 0 0 chrX 16762286 16762424 -160211716 + FLAM_C SINE Alu 1 138 -5 22 0 0 0 chrX 16762431 16762453 -160211687 + AT_rich Low_complexity Low_complexity 1 22 0 462 182 23 0 chrX 16763495 16763583 -160210557 - L1M4 LINE L1 -466 5718 5629 1174 234 11 0 chrX 16763623 16763884 -160210256 + L1MB7 LINE L1 5909 6172 -12 1281 246 24 3 chrX 16763895 16764188 -160209952 - MLT1F LTR MaLR -54 488 190 6033 113 41 22 chrX 16764430 16765381 -160208759 - LTR5 LTR ERVK 0 969 1 421 200 90 0 chrX 16765788 16765888 -160208252 + L2 LINE L2 3189 3297 -16 1983 170 38 32 chrX 16765891 16767457 -160206683 + L1MB7 LINE L1 4957 6180 0 593 235 69 9 chrX 16767467 16767638 -160206502 - MLT1F LTR MaLR -338 229 70 531 299 7 14 chrX 16767659 16767806 -160206334 - MIR SINE MIR -106 156 11 2170 110 0 10 chrX 16767910 16768209 -160205931 + AluSg SINE Alu 1 296 -14 2245 110 0 0 chrX 16768267 16768567 -160205573 - AluSx SINE Alu -10 302 3 226 254 0 0 chrX 16768568 16768623 -160205517 + MER5B DNA MER1_type 120 174 -4 2763 72 62 13 chrX 16769672 16770036 -160204104 + L1MA3 LINE L1 5892 6278 -27 264 100 0 0 chrX 16770036 16770076 -160204064 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 2763 72 62 13 chrX 16770076 16770099 -160204041 + L1MA3 LINE L1 6278 6298 -7 1419 70 9 3 chrX 16770169 16770399 -160203741 + AluSx SINE Alu 14 310 0 21 0 0 0 chrX 16771190 16771211 -160202929 + AT_rich Low_complexity Low_complexity 1 21 0 324 126 34 193 chrX 16771389 16771508 -160202632 - L1MA7 LINE L1 -216 6075 5976 920 168 69 0 chrX 16771509 16771711 -160202429 + L1MA7 LINE L1 6074 6289 -2 186 143 0 0 chrX 16772203 16772238 -160201902 + (CTG)n Simple_repeat Simple_repeat 3 37 0 2306 79 0 26 chrX 16773489 16773794 -160200346 - AluSg SINE Alu -13 297 1 226 212 224 94 chrX 16774058 16774205 -160199935 + L1ME4a LINE L1 5797 5924 -197 2235 100 0 25 chrX 16774205 16774525 -160199615 + AluSx SINE Alu 1 312 0 226 212 224 94 chrX 16774525 16774632 -160199508 + L1ME4a LINE L1 5924 6084 -37 1756 210 60 7 chrX 16775568 16776001 -160198139 + Charlie4a DNA MER1_type 26 481 -27 2267 72 7 0 chrX 16776573 16776849 -160197291 + AluSc SINE Alu 23 300 -9 2259 99 0 10 chrX 16778041 16778345 -160195795 + AluSx SINE Alu 1 301 -11 445 192 0 0 chrX 16778539 16778617 -160195523 + MER112 DNA MER1_type 8 85 -175 22 80 0 0 chrX 16779220 16779270 -160194870 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chrX 16780093 16780129 -160194011 + AT_rich Low_complexity Low_complexity 1 36 0 426 231 90 34 chrX 16780131 16780346 -160193794 + L1ME LINE L1 5372 5612 -509 2379 75 3 26 chrX 16780420 16780728 -160193412 + AluSp SINE Alu 1 301 -12 22 35 0 0 chrX 16781040 16781069 -160193071 + AT_rich Low_complexity Low_complexity 1 29 0 1976 158 0 3 chrX 16781069 16781366 -160192774 + AluJb SINE Alu 1 296 -16 1064 171 42 26 chrX 16781413 16781606 -160192534 - AluJo SINE Alu -31 281 86 1287 131 103 0 chrX 16781890 16782104 -160192036 + MER46A DNA MER2_type 1 236 0 248 274 176 0 chrX 16782269 16782371 -160191769 + L1ME LINE L1 5610 5729 -392 311 184 0 0 chrX 16782426 16782475 -160191665 + Tigger5 DNA MER2_type 7 55 -2268 * 434 191 0 91 chrX 16782469 16782549 -160191591 + Tigger5 DNA MER2_type 2224 2293 -30 2198 117 20 0 chrX 16782549 16782849 -160191291 + AluSx SINE Alu 1 306 -6 434 191 0 91 chrX 16782849 16782878 -160191262 + Tigger5 DNA MER2_type 2293 2323 0 2370 91 0 0 chrX 16782906 16783202 -160190938 + AluSx SINE Alu 1 296 -16 1834 161 0 13 chrX 16783211 16783515 -160190625 + AluJo SINE Alu 1 300 -12 2084 114 38 3 chrX 16783961 16784250 -160189890 + AluSx SINE Alu 1 299 -13 2124 94 0 21 chrX 16784255 16784565 -160189575 + AluSc SINE Alu 1 304 0 501 301 33 11 chrX 16784641 16784824 -160189316 - MIR3 SINE MIR -6 202 16 1815 125 38 79 chrX 16785101 16785167 -160188973 - L1MB8 LINE L1 0 6178 6111 1635 153 0 75 chrX 16785167 16785501 -160188639 + AluJo SINE Alu 1 309 -3 2460 52 7 13 chrX 16785506 16785812 -160188328 + AluY SINE Alu 1 304 -7 1815 125 38 79 chrX 16785812 16786131 -160188009 - L1MB8 LINE L1 -71 6107 5803 22 43 0 21 chrX 16786295 16786316 -160187824 + AT_rich Low_complexity Low_complexity 1 21 -25 2124 138 0 0 chrX 16786316 16786613 -160187527 + AluJb SINE Alu 1 297 -15 22 43 0 21 chrX 16786613 16786638 -160187502 + AT_rich Low_complexity Low_complexity 21 46 0 210 71 0 0 chrX 16786792 16786820 -160187320 + (TG)n Simple_repeat Simple_repeat 2 29 0 923 136 0 27 chrX 16787252 16787399 -160186741 + FLAM_C SINE Alu 1 143 0 180 0 0 0 chrX 16787408 16787428 -160186712 + (TA)n Simple_repeat Simple_repeat 1 20 0 243 167 0 125 chrX 16787639 16787711 -160186429 + U2 snRNA snRNA 1 63 -125 2406 59 7 23 chrX 16788312 16788617 -160185523 + AluY SINE Alu 1 300 -11 2258 110 0 3 chrX 16789053 16789352 -160184788 - AluSx SINE Alu -14 298 1 274 219 96 0 chrX 16789400 16789473 -160184667 + L2 LINE L2 3190 3269 -44 183 42 0 0 chrX 16790365 16790389 -160183751 + (T)n Simple_repeat Simple_repeat 1 24 0 670 264 88 42 chrX 16791111 16791350 -160182790 - MIR SINE MIR -3 259 10 1774 158 28 0 chrX 16791757 16792041 -160182099 - AluJb SINE Alu -20 292 1 729 157 0 0 chrX 16792482 16792597 -160181543 - FRAM SINE Alu -53 123 9 181 241 52 0 chrX 16792745 16792803 -160181337 - L2 LINE L2 -54 3259 3199 2245 115 0 0 chrX 16792889 16793194 -160180946 - AluSx SINE Alu -7 305 1 958 189 31 45 chrX 16793491 16793580 -160180560 + MER20 DNA MER1_type 1 90 -129 2543 43 0 16 chrX 16793580 16793883 -160180257 + AluY SINE Alu 1 298 -13 958 189 31 45 chrX 16793883 16794015 -160180125 + MER20 DNA MER1_type 90 219 0 2404 84 0 0 chrX 16794165 16794461 -160179679 + AluSx SINE Alu 1 296 -16 2366 89 0 0 chrX 16794478 16794771 -160179369 + AluSp SINE Alu 1 293 -20 2027 122 7 3 chrX 16794790 16795078 -160179062 + AluSx SINE Alu 1 289 -23 692 107 0 2 chrX 16795574 16795818 -160178322 + AluSx SINE Alu 1 290 -20 213 211 0 0 chrX 16795848 16795905 -160178235 + (TA)n Simple_repeat Simple_repeat 2 58 0 2026 170 0 0 chrX 16795923 16796235 -160177905 + AluJb SINE Alu 1 312 0 3240 135 18 162 chrX 16796241 16797287 -160176853 - MER21A LTR ERV1 -20 911 70 445 178 2 0 chrX 16797382 16797465 -160176675 - MER21A LTR ERV1 -779 84 1 27 0 0 0 chrX 16797674 16797701 -160176439 + AT_rich Low_complexity Low_complexity 1 27 0 1679 121 71 0 chrX 16797707 16797946 -160176194 - AluSx SINE Alu -56 256 1 319 295 101 16 chrX 16798054 16798183 -160175957 - L2 LINE L2 0 3272 3133 2040 130 0 7 chrX 16798199 16798504 -160175636 + AluJb SINE Alu 1 303 0 2041 140 0 7 chrX 16798864 16799171 -160174969 + AluJb SINE Alu 1 305 -7 236 109 0 22 chrX 16799348 16799394 -160174746 + (TGGGGG)n Simple_repeat Simple_repeat 4 48 0 484 221 40 34 chrX 16799581 16799730 -160174410 + MER112 DNA MER1_type 10 159 -101 373 83 14 14 chrX 16799786 16799858 -160174282 + (TA)n Simple_repeat Simple_repeat 2 73 0 2391 68 0 0 chrX 16799860 16800138 -160174002 - AluSg SINE Alu -31 279 2 1928 128 7 7 chrX 16800156 16800446 -160173694 - AluSx SINE Alu -22 290 1 2197 99 3 23 chrX 16800537 16800840 -160173300 + AluSx SINE Alu 1 297 -15 624 224 17 34 chrX 16801056 16801235 -160172905 + MIR SINE MIR 57 232 -30 1866 153 3 0 chrX 16801271 16801553 -160172587 - AluJb SINE Alu -11 301 19 825 86 0 0 chrX 16801553 16801658 -160172482 - AluSq/x SINE Alu -206 106 2 1823 137 47 4 chrX 16801666 16801944 -160172196 - AluJo SINE Alu -22 290 1 2377 105 0 0 chrX 16802144 16802448 -160171692 + AluSg SINE Alu 5 308 -2 2434 85 0 0 chrX 16802472 16802777 -160171363 + AluSx SINE Alu 1 305 -7 365 122 84 93 chrX 16802833 16802940 -160171200 + MLT1H1 LTR MaLR 369 474 -81 2385 76 0 0 chrX 16803410 16803700 -160170440 - AluSx SINE Alu -22 290 1 1638 150 20 65 chrX 16803999 16804139 -160170001 - AluJo SINE Alu -30 282 160 4548 128 47 42 chrX 16804139 16804806 -160169334 + LTR25 LTR ERV1 1 674 -120 2111 85 68 4 chrX 16804806 16805087 -160169053 - AluSp SINE Alu -14 299 1 4548 128 47 42 chrX 16805087 16805209 -160168931 + LTR25 LTR ERV1 674 794 0 1638 150 20 65 chrX 16805209 16805362 -160168778 - AluJo SINE Alu -152 160 2 403 266 86 66 chrX 16805369 16805708 -160168432 + L1ME LINE L1 5443 5800 -321 1758 133 76 0 chrX 16806021 16806285 -160167855 - AluJo SINE Alu -28 284 1 579 260 31 55 chrX 16806388 16806642 -160167498 + MIR SINE MIR 15 262 0 216 0 0 0 chrX 16807050 16807074 -160167066 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2180 79 22 7 chrX 16807074 16807352 -160166788 - AluSc SINE Alu -27 282 1 2535 54 0 32 chrX 16807901 16808214 -160165926 - AluY SINE Alu -8 303 1 2339 81 3 7 chrX 16809717 16810012 -160164128 + AluSx SINE Alu 1 294 -18 2423 83 7 0 chrX 16810012 16810314 -160163826 + AluSp SINE Alu 1 304 -9 1609 135 13 74 chrX 16810748 16811060 -160163080 + AluJo SINE Alu 1 293 -19 2197 82 7 14 chrX 16811190 16811503 -160162637 + AluSc SINE Alu 1 311 0 21 36 0 0 chrX 16811578 16811606 -160162534 + AT_rich Low_complexity Low_complexity 1 28 0 1333 228 104 54 chrX 16811891 16811980 -160162160 + L1MC4 LINE L1 7457 7540 -502 2550 70 3 6 chrX 16811980 16812294 -160161846 + AluSp SINE Alu 1 313 0 1333 228 104 54 chrX 16812294 16812762 -160161378 + L1MC4 LINE L1 7540 8042 0 2296 112 0 0 chrX 16812844 16813147 -160160993 + AluSq SINE Alu 1 303 -10 1924 147 0 10 chrX 16813632 16813924 -160160216 - AluSx SINE Alu -23 289 1 1371 232 60 6 chrX 16813950 16814299 -160159841 + L1MC4 LINE L1 6700 7067 -975 1750 133 92 0 chrX 16814314 16814585 -160159555 + AluSq SINE Alu 10 305 -8 941 169 6 44 chrX 16814585 16814768 -160159372 + AluJb SINE Alu 134 309 -3 1948 153 0 10 chrX 16814770 16815084 -160159056 + AluSx SINE Alu 1 311 -1 486 243 90 49 chrX 16815147 16815840 -160158300 + L1MC5 LINE L1 6992 7523 -438 2355 98 0 16 chrX 16815851 16816158 -160157982 + AluSq SINE Alu 1 302 -11 700 106 0 19 chrX 16816244 16816348 -160157792 - L1MB8 LINE L1 0 6178 6077 2203 116 0 0 chrX 16816353 16816654 -160157486 - AluSx SINE Alu -11 301 1 376 177 81 50 chrX 16816656 16816846 -160157294 + L1MC5 LINE L1 7696 7931 -30 1708 133 0 12 chrX 16817029 16817278 -160156862 + AluSx SINE Alu 1 246 -66 213 39 0 0 chrX 16817281 16817307 -160156833 + (A)n Simple_repeat Simple_repeat 1 26 0 1616 176 7 23 chrX 16817483 16817789 -160156351 + AluJo SINE Alu 1 301 -11 1211 116 145 5 chrX 16818113 16818320 -160155820 + MER46A DNA MER2_type 1 236 0 1703 169 35 17 chrX 16818356 16818646 -160155494 - AluJb SINE Alu -15 297 3 331 293 75 42 chrX 16819186 16819398 -160154742 + MER20 DNA MER1_type 1 219 0 380 291 82 19 chrX 16819404 16819562 -160154578 + L2 LINE L2 3145 3312 -1 456 184 194 0 chrX 16819580 16819683 -160154457 + L2 LINE L2 3188 3310 -3 941 123 175 76 chrX 16820007 16820218 -160153922 - MER46A DNA MER2_type -3 233 2 1952 134 3 13 chrX 16820423 16820586 -160153554 - AluJb SINE Alu -15 297 137 2109 120 3 7 chrX 16820586 16820887 -160153253 - AluSg SINE Alu -10 300 1 1952 134 3 13 chrX 16820887 16821021 -160153119 - AluJb SINE Alu -175 137 3 24 0 0 0 chrX 16821511 16821535 -160152605 + AT_rich Low_complexity Low_complexity 1 24 0 2214 118 0 0 chrX 16821539 16821836 -160152304 + AluSx SINE Alu 1 297 -15 529 277 31 41 chrX 16821844 16822039 -160152101 - MIR SINE MIR -21 241 49 2609 56 0 3 chrX 16822357 16822662 -160151478 + AluY SINE Alu 1 304 -7 1966 141 7 0 chrX 16822721 16823018 -160151122 + AluSx SINE Alu 1 299 -13 2012 93 107 19 chrX 16823230 16823540 -160150600 - MER1B DNA MER1_type 0 337 1 2524 41 10 0 chrX 16823575 16823866 -160150274 - AluY SINE Alu -17 294 1 1989 207 25 18 chrX 16824049 16824498 -160149642 + MLT1C LTR MaLR 1 452 -15 1161 147 0 49 chrX 16824494 16824698 -160149442 + MER2 DNA MER2_type 6 199 -146 * 669 148 0 0 chrX 16824706 16824807 -160149333 + AluJb SINE Alu 18 118 -194 2110 112 3 7 chrX 16824817 16825126 -160149014 - AluSx SINE Alu 0 308 1 453 211 26 0 chrX 16825194 16825270 -160148870 + MER2 DNA MER2_type 268 345 0 2437 91 0 0 chrX 16826015 16826312 -160147828 + AluSq SINE Alu 1 297 -16 183 265 20 88 chrX 16826623 16826725 -160147415 - MIR3 SINE MIR -2 206 112 260 222 32 0 chrX 16826985 16827048 -160147092 - MIR SINE MIR -14 248 184 2293 62 48 0 chrX 16827068 16827357 -160146783 + AluSc SINE Alu 1 303 -6 249 362 110 35 chrX 16827637 16827714 -160146426 - L2 LINE L2 -839 2475 2405 1844 176 7 3 chrX 16827714 16828010 -160146130 + AluJo SINE Alu 1 297 -15 249 362 110 35 chrX 16828010 16828090 -160146050 - L2 LINE L2 -909 2405 2332 1586 178 10 20 chrX 16828090 16828223 -160145917 + AluJo SINE Alu 5 138 -174 1930 148 3 3 chrX 16828223 16828521 -160145619 + AluJb SINE Alu 1 298 -14 1586 178 10 20 chrX 16828521 16828685 -160145455 + AluJo SINE Alu 138 299 -13 249 362 110 35 chrX 16828685 16828808 -160145332 - L2 LINE L2 -982 2332 2173 288 176 88 55 chrX 16828869 16828922 -160145218 + L1MB3 LINE L1 6090 6149 -34 2195 131 0 0 chrX 16828922 16829228 -160144912 + AluSx SINE Alu 1 306 -6 288 176 88 55 chrX 16829228 16829265 -160144875 + L1MB3 LINE L1 6149 6183 0 2035 115 7 3 chrX 16829268 16829554 -160144586 + AluJo SINE Alu 1 287 -25 35 56 0 34 chrX 16829555 16829644 -160144496 + AT_rich Low_complexity Low_complexity 1 86 0 2215 72 0 4 chrX 16829649 16829926 -160144214 + AluSq SINE Alu 1 276 -37 181 57 57 0 chrX 16829933 16829968 -160144172 + A-rich Low_complexity Low_complexity 3 39 0 297 345 169 0 chrX 16829990 16830251 -160143889 - L2 LINE L2 -1162 2152 1848 1205 141 0 0 chrX 16830389 16830566 -160143574 - AluSg/x SINE Alu -2 308 132 2155 87 31 0 chrX 16830566 16830852 -160143288 - AluSx SINE Alu -17 295 1 219 356 63 6 chrX 16830853 16831027 -160143113 - L2 LINE L2 -1604 1710 1527 1611 167 4 0 chrX 16831100 16831357 -160142783 - AluJo SINE Alu -54 258 1 203 272 0 62 chrX 16831367 16831448 -160142692 + L3b LINE CR1 1195 1270 -313 2228 108 3 0 chrX 16831449 16831746 -160142394 + AluSq SINE Alu 1 298 -15 780 161 16 0 chrX 16831746 16831870 -160142270 + FLAM_C SINE Alu 1 126 -7 2477 190 119 31 chrX 16832176 16833361 -160140779 + L1MC4 LINE L1 6459 7902 -140 2454 80 0 0 chrX 16833362 16833663 -160140477 - AluY SINE Alu -10 301 1 245 182 0 0 chrX 16833670 16833714 -160140426 + L1MC4 LINE L1 7984 8027 -15 2409 80 7 0 chrX 16833825 16834125 -160140015 - AluSp SINE Alu -11 302 1 835 118 30 7 chrX 16834371 16834506 -160139634 + L1MB8 LINE L1 6041 6178 0 2281 102 7 3 chrX 16834926 16835230 -160138910 + AluSx SINE Alu 1 305 -7 189 74 0 0 chrX 16835347 16835374 -160138766 + (TA)n Simple_repeat Simple_repeat 1 27 0 236 336 10 10 chrX 16835528 16835632 -160138508 + GA-rich Low_complexity Low_complexity 4 107 0 671 240 106 92 chrX 16835719 16836315 -160137825 + L1MC4 LINE L1 7351 8033 -8 189 244 42 92 chrX 16836572 16836691 -160137449 + MIR SINE MIR 110 222 -40 1254 102 11 6 chrX 16837310 16837487 -160136653 - AluSg/x SINE Alu -9 301 124 216 0 0 0 chrX 16837487 16837511 -160136629 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2275 82 3 0 chrX 16837511 16837793 -160136347 - AluSq SINE Alu -30 283 1 2017 83 12 0 chrX 16838482 16838736 -160135404 + AluSg1 SINE Alu 45 301 -8 1775 105 116 8 chrX 16838736 16839003 -160135137 + AluSg1 SINE Alu 14 309 0 2053 141 0 0 chrX 16840271 16840570 -160133570 + AluJb SINE Alu 3 301 -11 2316 113 0 0 chrX 16840763 16841074 -160133066 + AluSx SINE Alu 1 311 -1 2449 70 3 0 chrX 16841599 16841899 -160132241 - AluY SINE Alu -10 301 1 2119 128 10 0 chrX 16842059 16842348 -160131792 + AluSx SINE Alu 1 292 -20 1968 109 65 0 chrX 16842708 16842983 -160131157 + AluSq SINE Alu 1 293 -20 793 217 9 74 chrX 16842986 16843203 -160130937 + MIR SINE MIR 60 262 0 1795 135 49 17 chrX 16843256 16843544 -160130596 + AluJb SINE Alu 1 297 -15 2126 110 14 0 chrX 16843848 16844138 -160130002 - AluSx SINE Alu -17 295 2 465 19 0 0 chrX 16844446 16844500 -160129640 + (CA)n Simple_repeat Simple_repeat 2 55 0 1350 45 7 0 chrX 16844710 16844865 -160129275 + L1PA3 LINE L1 5995 6150 -5 1368 148 5 0 chrX 16844875 16845092 -160129048 + L1M2 LINE L1 5464 5681 -631 2024 127 3 3 chrX 16845419 16845711 -160128429 - AluSx SINE Alu -20 292 1 381 58 0 0 chrX 16845942 16845994 -160128146 + (GA)n Simple_repeat Simple_repeat 1 52 0 685 169 33 87 chrX 16847288 16847348 -160126792 - MER5B DNA MER1_type -5 173 111 2336 86 7 0 chrX 16847348 16847650 -160126490 + AluSx SINE Alu 1 304 -8 685 169 33 87 chrX 16847650 16847772 -160126368 - MER5B DNA MER1_type -67 111 1 441 285 30 45 chrX 16847901 16848101 -160126039 - L2 LINE L2 -5 3308 3112 461 268 76 79 chrX 16848733 16849050 -160125090 - MLT1K LTR MaLR -109 479 164 2299 94 16 3 chrX 16849167 16849476 -160124664 + AluSq SINE Alu 1 313 0 742 139 0 0 chrX 16850030 16850138 -160124002 + AluJo SINE Alu 28 135 -177 2554 68 3 0 chrX 16850180 16850488 -160123652 - AluSg SINE Alu -1 309 1 1887 122 3 10 chrX 16850743 16851031 -160123109 + AluSx SINE Alu 1 286 -26 2218 110 3 0 chrX 16851095 16851396 -160122744 + AluSg SINE Alu 1 302 -8 1778 146 14 31 chrX 16854690 16854984 -160119156 + AluJo SINE Alu 1 289 -23 3768 143 7 3 chrX 16855773 16856341 -160117799 + L1PB3 LINE L1 5583 6152 -2 2146 110 3 7 chrX 16856811 16857110 -160117030 + AluSx SINE Alu 3 300 -12 2351 72 0 14 chrX 16858120 16858411 -160115729 + AluSx SINE Alu 17 303 -9 1773 48 0 0 chrX 16858783 16858991 -160115149 + THE1-int LTR MaLR 231 438 -1142 1397 144 39 0 chrX 16858991 16859220 -160114920 - MSTA LTR MaLR -190 238 1 342 339 94 39 chrX 16859221 16859401 -160114739 - L1M2 LINE L1 -5989 860 671 889 338 20 27 chrX 16859461 16859864 -160114276 - L1PA13 LINE L1 -6349 438 39 477 0 0 0 chrX 16860272 16860325 -160113815 + (CA)n Simple_repeat Simple_repeat 2 54 0 1740 183 73 82 chrX 16860325 16860790 -160113350 + MLT1C LTR MaLR 7 467 0 7426 188 88 15 chrX 16860877 16862369 -160111771 + L1M1 LINE L1 22 1622 -5943 16500 158 19 16 chrX 16862374 16863165 -160110975 + L1M1 LINE L1 2652 3439 -4285 2029 123 6 50 chrX 16863165 16863483 -160110657 + AluSx SINE Alu 1 304 -8 16500 158 19 16 chrX 16863483 16865779 -160108361 + L1M1 LINE L1 3439 5765 -1959 2169 95 0 0 chrX 16865779 16866053 -160108087 + AluSc SINE Alu 1 274 -35 16500 158 19 16 chrX 16866053 16867303 -160106837 + L1M1 LINE L1 5765 7010 -714 930 193 5 11 chrX 16867303 16867490 -160106650 + AluJo SINE Alu 121 306 -6 4973 93 10 21 chrX 16867497 16868204 -160105936 + L1MA3 LINE L1 5599 6297 -8 5892 110 28 6 chrX 16868288 16869143 -160104997 + Tigger1 DNA MER2_type 1545 2418 0 5852 159 17 26 chrX 16869703 16870383 -160103757 - L1MA10 LINE L1 -8 6326 5659 2252 89 34 0 chrX 16870383 16870675 -160103465 + AluSx SINE Alu 1 302 -10 5852 159 17 26 chrX 16870675 16871304 -160102836 - L1MA10 LINE L1 -675 5659 5026 316 333 51 88 chrX 16871814 16872165 -160101975 + L2 LINE L2 2511 2848 -466 207 264 179 60 chrX 16872172 16872373 -160101767 + L2 LINE L2 3008 3232 -81 330 211 48 58 chrX 16873483 16873587 -160100553 - L1MA8 LINE L1 -12 6279 6177 * 689 122 73 0 chrX 16873585 16873708 -160100432 + L1MA8 LINE L1 6042 6173 -118 1108 283 72 42 chrX 16873791 16874292 -160099848 - LTR33 LTR ERVL -4 517 2 702 184 152 6 chrX 16874516 16874674 -160099466 + MER5A DNA MER1_type 9 189 0 2116 74 0 67 chrX 16875426 16875738 -160098402 + AluSc SINE Alu 1 291 -18 597 173 60 0 chrX 16875980 16876113 -160098027 + LTR16C LTR ERVL 351 491 0 440 219 95 0 chrX 16876250 16876355 -160097785 + L2 LINE L2 3189 3303 -10 1943 171 154 47 chrX 16877718 16878256 -160095884 - LTR4 LTR ERV1 0 596 1 412 141 0 0 chrX 16879290 16879354 -160094786 - Tigger7 DNA MER2_type -28 2559 2496 * 2927 165 37 2 chrX 16879348 16879856 -160094284 - Tigger7 DNA MER2_type -1961 526 1 831 255 99 37 chrX 16879910 16880346 -160093794 + MLT1J LTR MaLR 40 502 -9 233 67 0 0 chrX 16930944 16930974 -160043166 - U3 snRNA snRNA -175 42 13 4562 152 47 29 chrX 16930974 16931020 -160043120 + L1PB4 LINE L1 5274 5318 -838 2011 131 7 10 chrX 16931020 16931311 -160042829 + AluSx SINE Alu 3 292 -20 4562 152 47 29 chrX 16931311 16932130 -160042010 + L1PB4 LINE L1 5318 6155 -1 760 252 7 0 chrX 16932130 16932285 -160041855 - MIR SINE MIR -101 161 6 2326 179 54 7 chrX 16932688 16933095 -160041045 + MSTB LTR MaLR 1 426 0 2311 177 55 2 chrX 16933894 16934385 -160039755 - L1 LINE L1 -1377 5471 4955 * 3357 204 15 4 chrX 16934373 16934398 -160039742 - L1 LINE L1 -4360 2489 2466 234 0 0 0 chrX 16934398 16934424 -160039716 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3357 204 15 4 chrX 16934424 16935117 -160039023 - L1 LINE L1 -4383 2466 1763 * 43441 51 3 1 chrX 16935115 16941252 -160032888 - L1PA4 LINE L1 -11 6144 1 5190 236 27 22 chrX 16941257 16942416 -160031724 - L1 LINE L1 -5075 1774 610 225 0 0 0 chrX 16942432 16942457 -160031683 + (CAG)n Simple_repeat Simple_repeat 3 27 0 2314 215 108 14 chrX 16942586 16943102 -160031038 + MLT1F1 LTR MaLR 3 567 0 21 0 0 0 chrX 16943146 16943167 -160030973 + AT_rich Low_complexity Low_complexity 1 21 0 189 367 136 7 chrX 16943646 16943793 -160030347 - L2 LINE L2 0 3272 3107 256 206 0 0 chrX 16943793 16943856 -160030284 + L1M4 LINE L1 5021 5083 -1063 4317 111 8 28 chrX 16943857 16943951 -160030189 + L1PA16 LINE L1 5395 5489 -677 2231 122 3 0 chrX 16943951 16944262 -160029878 + AluSx SINE Alu 1 312 0 4317 111 8 28 chrX 16944262 16944836 -160029304 + L1PA16 LINE L1 5489 6049 -117 578 167 0 0 chrX 16944834 16944930 -160029210 - L1M2 LINE L1 -5390 1459 1364 * 395 218 0 30 chrX 16944930 16945031 -160029109 + L1PA15 LINE L1 6059 6156 -9 771 290 50 5 chrX 16945183 16945383 -160028757 + MER63A DNA MER1_type 2 210 0 11255 162 44 14 chrX 16945764 16947651 -160026489 + L1M1 LINE L1 18 1960 -5605 2658 132 16 43 chrX 16947651 16948022 -160026118 + MSTB LTR MaLR 1 361 -65 890 138 0 0 chrX 16948022 16948158 -160025982 + FLAM_C SINE Alu 1 136 0 2658 132 16 43 chrX 16948158 16948223 -160025917 + MSTB LTR MaLR 361 426 0 9651 167 30 6 chrX 16948227 16949835 -160024305 + MSTB-int LTR MaLR 5 1651 0 2300 155 39 55 chrX 16949835 16949946 -160024194 + MSTB LTR MaLR 1 112 -314 1314 179 117 68 chrX 16949946 16950375 -160023765 - LTR7 LTR ERV1 0 450 1 2300 155 39 55 chrX 16950375 16950465 -160023675 + MSTB LTR MaLR 112 202 -224 2245 89 0 33 chrX 16950465 16950767 -160023373 + AluY SINE Alu 1 292 -19 2300 155 39 55 chrX 16950767 16950997 -160023143 + MSTB LTR MaLR 202 426 0 9182 188 38 50 chrX 16950997 16953612 -160020528 + L1M1 LINE L1 1956 4600 -2965 4171 98 7 3 chrX 16953612 16954184 -160019956 + L1PB1 LINE L1 5576 6149 -2 9182 188 38 50 chrX 16954184 16954516 -160019624 + L1M1 LINE L1 4600 4899 -2666 294 83 0 0 chrX 16954516 16954552 -160019588 + U2 snRNA snRNA 1 36 -152 9182 188 38 50 chrX 16954552 16954905 -160019235 + L1M1 LINE L1 4899 5255 -2310 7203 65 16 1 chrX 16955446 16956948 -160017192 + L1PA6 LINE L1 4627 6143 -11 412 243 108 0 chrX 16956980 16957091 -160017049 + MER63A DNA MER1_type 88 210 0 1387 230 67 12 chrX 16957091 16957434 -160016706 - L1ME LINE L1 -512 5650 5289 257 329 107 36 chrX 16957509 16957734 -160016406 + MIR SINE MIR 2 242 -20 329 278 179 47 chrX 16958195 16958407 -160015733 + L2 LINE L2 3011 3250 -22 195 100 0 0 chrX 16958572 16958602 -160015538 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chrX 16958805 16958827 -160015313 + AT_rich Low_complexity Low_complexity 1 22 0 2395 67 0 3 chrX 16959748 16960048 -160014092 + AluSc SINE Alu 1 299 -10 225 0 0 0 chrX 16960097 16960122 -160014018 + (TA)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chrX 16960165 16960188 -160013952 + (TC)n Simple_repeat Simple_repeat 2 24 0 583 250 26 7 chrX 16960512 16960664 -160013476 + MER5B DNA MER1_type 20 174 -4 391 307 91 29 chrX 16960666 16960907 -160013233 + L2 LINE L2 2499 2754 -560 2177 81 3 11 chrX 16960999 16961313 -160012827 - AluSp SINE Alu 0 312 1 498 224 148 15 chrX 16961318 16961514 -160012626 - L1MD3 LINE L1 -8 7987 7766 479 251 20 126 chrX 16961597 16961692 -160012448 + MER5B DNA MER1_type 1 66 -112 458 254 136 73 chrX 16961692 16961869 -160012271 - MER5A DNA MER1_type -1 188 1 479 251 20 126 chrX 16961869 16961972 -160012168 + MER5B DNA MER1_type 66 178 0 571 304 133 54 chrX 16962376 16962932 -160011208 + L2 LINE L2 1367 1966 -1348 23 33 0 0 chrX 16963019 16963049 -160011091 + AT_rich Low_complexity Low_complexity 1 30 0 276 265 128 0 chrX 16963662 16963764 -160010376 + L2 LINE L2 3198 3312 -1 * 352 367 53 38 chrX 16963760 16964288 -160009852 + L2 LINE L2 1997 2532 -782 495 283 7 26 chrX 16964380 16964532 -160009608 + MER103 DNA DNA 11 159 -7 252 0 0 0 chrX 16964541 16964569 -160009571 + (T)n Simple_repeat Simple_repeat 1 28 0 3361 220 63 33 chrX 16964827 16966606 -160007534 - L1MCb LINE L1 -3529 3035 1044 1896 154 0 13 chrX 16966606 16966904 -160007236 - AluJo SINE Alu -18 294 1 3361 220 63 33 chrX 16966904 16967413 -160006727 - L1MCb LINE L1 -5520 1044 552 428 243 36 21 chrX 16967493 16967633 -160006507 - L1MCb LINE L1 -5493 552 411 380 215 87 60 chrX 16967635 16967784 -160006356 - MIR SINE MIR -108 154 2 2020 187 16 53 chrX 16967911 16968403 -160005737 + MER31A LTR ERV1 12 485 0 979 154 44 11 chrX 16968919 16969101 -160005039 + MER5A DNA MER1_type 1 188 -1 539 199 166 11 chrX 16969191 16969347 -160004793 + MER5A DNA MER1_type 6 189 0 345 332 65 8 chrX 16970279 16970460 -160003680 - MIR SINE MIR -55 207 17 552 222 170 20 chrX 16970484 16970637 -160003503 + MER5A DNA MER1_type 9 184 -5 276 323 65 32 chrX 16971560 16971653 -160002487 - L2 LINE L2 -19 3253 3158 189 0 0 0 chrX 16972295 16972316 -160001824 + (A)n Simple_repeat Simple_repeat 1 21 0 405 0 0 0 chrX 16972316 16972361 -160001779 + (TA)n Simple_repeat Simple_repeat 1 45 0 1047 261 32 11 chrX 16972379 16972659 -160001481 + LTR16C LTR ERVL 158 443 -48 237 244 122 37 chrX 16973878 16973960 -160000180 + L3 LINE CR1 1485 1573 -4 1064 113 154 36 chrX 16974489 16974684 -159999456 - MER20 DNA MER1_type -1 218 1 342 213 83 37 chrX 16974765 16974873 -159999267 - MER58C DNA MER1_type -31 184 72 304 237 0 0 chrX 16975490 16975549 -159998591 - L2 LINE L2 -8 3305 3247 294 237 93 72 chrX 16975880 16976019 -159998121 + MIR SINE MIR 3 145 -63 21 0 0 0 chrX 16977089 16977110 -159997030 + AT_rich Low_complexity Low_complexity 1 21 0 522 57 0 0 chrX 16979807 16979877 -159994263 + (CGG)n Simple_repeat Simple_repeat 2 71 0 560 278 74 47 chrX 16980665 16981123 -159993017 - L1ME LINE L1 -391 6007 5518 226 340 19 0 chrX 16981318 16981421 -159992719 - L1ME LINE L1 -1088 5294 5190 428 59 0 0 chrX 16982089 16982140 -159992000 + 5S rRNA rRNA 1 51 -70 1167 130 10 10 chrX 16982194 16982401 -159991739 + L1MA7 LINE L1 6085 6291 0 1800 215 6 18 chrX 16982454 16982789 -159991351 - MLT1H1 LTR MaLR 0 555 225 1503 288 56 10 chrX 16982815 16983251 -159990889 - L1ME LINE L1 -2654 3728 3249 2175 137 0 0 chrX 16983251 16983558 -159990582 - AluSg SINE Alu -3 307 1 1503 288 56 10 chrX 16983558 16983799 -159990341 - L1ME LINE L1 -3133 3249 3020 5991 162 15 13 chrX 16983828 16985400 -159988740 + L1MA6 LINE L1 4727 6294 -6 1383 256 78 37 chrX 16985430 16986416 -159987724 - L1ME LINE L1 -3883 2680 1496 1647 158 4 0 chrX 16986416 16986694 -159987446 - L1MA4 LINE L1 -5 6295 6017 1383 256 78 37 chrX 16986694 16986780 -159987360 - L1ME LINE L1 -5067 1496 1415 6436 140 9 21 chrX 16986805 16988044 -159986096 - L1MA2 LINE L1 0 7723 6500 19264 67 9 5 chrX 16988091 16991869 -159982271 - L1PA4 LINE L1 -5 6150 2212 3836 124 28 3 chrX 16992026 16992624 -159981516 - L1PA4 LINE L1 -5531 615 3 7288 187 22 15 chrX 16992624 16992997 -159981143 - L1MA2 LINE L1 -2359 5206 4837 2241 88 0 13 chrX 16992997 16993303 -159980837 + AluY SINE Alu 3 304 -7 7288 187 22 15 chrX 16993303 16994825 -159979315 - L1MA2 LINE L1 -2728 4837 3306 3037 242 53 53 chrX 16994825 16995981 -159978159 - L1M4 LINE L1 -4863 1679 524 388 263 69 50 chrX 16997986 16998146 -159975994 + MLT1L LTR MaLR 445 607 -8 2139 141 0 0 chrX 16999275 16999574 -159974566 - AluSx SINE Alu -13 299 1 2393 91 0 0 chrX 17000623 17000932 -159973208 - AluSg SINE Alu -1 309 1 4280 96 8 22 chrX 17001082 17001707 -159972433 - L1MA1 LINE L1 0 6302 5687 218 276 0 41 chrX 17001827 17001950 -159972190 + A-rich Low_complexity Low_complexity 1 118 0 371 302 102 25 chrX 17001952 17002187 -159971953 + L1 LINE L1 5150 5402 -744 33 0 0 0 chrX 17002359 17002392 -159971748 + AT_rich Low_complexity Low_complexity 1 33 0 33 90 0 0 chrX 17002536 17002625 -159971515 + GC_rich Low_complexity Low_complexity 1 89 0 206 247 0 41 chrX 17002760 17002833 -159971307 + C-rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chrX 17003635 17003664 -159970476 + GC_rich Low_complexity Low_complexity 1 29 0 259 320 0 0 chrX 17004110 17004185 -159969955 + GA-rich Low_complexity Low_complexity 1 75 0 382 114 44 26 chrX 17005504 17005618 -159968522 + GA-rich Low_complexity Low_complexity 2 117 0 309 165 71 0 chrX 17005779 17005864 -159968276 - L1ME4a LINE L1 -4 6117 6027 688 282 95 17 chrX 17005919 17006160 -159967980 + MIR SINE MIR 2 261 -1 2458 197 28 49 chrX 17006198 17006453 -159967687 + MER90 LTR ERV1 59 318 -296 2395 86 7 0 chrX 17006453 17006756 -159967384 + AluSq SINE Alu 1 305 -8 2458 197 28 49 chrX 17006756 17007068 -159967072 + MER90 LTR ERV1 318 614 0 618 269 73 8 chrX 17007097 17007357 -159966783 - L1ME4a LINE L1 -197 5924 5648 24 32 0 0 chrX 17008977 17009008 -159965132 + AT_rich Low_complexity Low_complexity 1 31 0 406 352 66 9 chrX 17010160 17010387 -159963753 - MIR SINE MIR -10 252 13 201 184 0 0 chrX 17010672 17010710 -159963430 - MIR3 SINE MIR -48 160 123 230 250 130 56 chrX 17011708 17011816 -159962324 - L2 LINE L2 -12 3260 3145 952 304 58 26 chrX 17012082 17012427 -159961713 + LTR16C LTR ERVL 136 491 0 229 121 0 0 chrX 17012487 17012520 -159961620 + L1MB7 LINE L1 6143 6175 -9 452 358 107 36 chrX 17012550 17012989 -159961151 - L2 LINE L2 -338 2976 2507 24 0 0 0 chrX 17015509 17015533 -159958607 + AT_rich Low_complexity Low_complexity 1 24 0 198 333 9 56 chrX 17016738 17016755 -159957385 - MIR SINE MIR -73 135 119 1148 239 71 77 chrX 17016755 17017248 -159956892 + LTR16C LTR ERVL 2 491 0 198 333 9 56 chrX 17017248 17017338 -159956802 - MIR SINE MIR -89 119 33 997 214 11 0 chrX 17018343 17018530 -159955610 + MER5A DNA MER1_type 1 189 0 979 230 49 0 chrX 17018992 17019218 -159954922 - MIR SINE MIR -22 240 4 231 174 0 0 chrX 17019451 17019494 -159954646 - MIR SINE MIR -64 144 101 396 0 0 0 chrX 17020360 17020404 -159953736 + (CA)n Simple_repeat Simple_repeat 2 45 0 396 269 97 34 chrX 17022145 17022320 -159951820 - MIR SINE MIR -46 216 31 2314 40 40 17 chrX 17022398 17022695 -159951445 + AluY SINE Alu 1 304 -7 296 270 22 130 chrX 17022988 17023173 -159950967 + MIR3 SINE MIR 42 206 -2 252 0 0 0 chrX 17023671 17023699 -159950441 + (T)n Simple_repeat Simple_repeat 1 28 0 531 244 59 0 chrX 17023852 17023987 -159950153 + LTR16C LTR ERVL 301 443 -48 218 339 0 17 chrX 17025413 17025472 -159948668 + MIR3 SINE MIR 13 70 -138 486 337 73 44 chrX 17025668 17026012 -159948128 + L2 LINE L2 2942 3295 -18 1106 254 32 44 chrX 17026406 17026744 -159947396 + LTR16C LTR ERVL 158 491 0 193 254 109 0 chrX 17026763 17026818 -159947322 + MIR SINE MIR 120 180 -82 441 165 13 13 chrX 17026853 17026932 -159947208 - MER116 DNA Mariner 0 80 2 794 225 13 53 chrX 17027681 17027908 -159946232 + MIR SINE MIR 34 251 -11 643 311 24 5 chrX 17028302 17028508 -159945632 - MIR SINE MIR -6 256 47 321 171 92 13 chrX 17028896 17028972 -159945168 - AluSp/q SINE Alu -3 300 219 2062 104 0 4 chrX 17029086 17029356 -159944784 - AluSq SINE Alu -44 269 1 463 200 61 17 chrX 17029541 17029656 -159944484 + L2 LINE L2 3189 3308 -5 22 56 0 0 chrX 17029980 17030016 -159944124 + AT_rich Low_complexity Low_complexity 1 36 0 647 206 56 0 chrX 17030108 17030234 -159943906 + MER94 DNA DNA 1 133 -1 221 328 90 0 chrX 17030914 17031036 -159943104 - L2 LINE L2 0 3313 3181 288 0 0 0 chrX 17031183 17031215 -159942925 + (TG)n Simple_repeat Simple_repeat 2 33 0 359 347 49 60 chrX 17031648 17032151 -159941989 - L2 LINE L2 -189 3083 2574 1600 242 88 13 chrX 17032455 17032910 -159941230 + LTR16C LTR ERVL 1 489 -2 396 0 0 0 chrX 17033896 17033940 -159940200 + (TG)n Simple_repeat Simple_repeat 2 45 0 2199 228 31 23 chrX 17033952 17034538 -159939602 - L1ME3 LINE L1 -5 6157 5560 * 11164 124 24 21 chrX 17034526 17036309 -159937831 + L1P LINE L1 11 1798 -4348 1734 69 0 30 chrX 17036413 17036645 -159937495 - L1M1 LINE L1 -591 5711 5487 505 226 0 0 chrX 17038264 17038348 -159935792 - MER63 DNA MER1_type 0 1061 978 1172 271 92 45 chrX 17038816 17039285 -159934855 + LTR16C LTR ERVL 1 491 0 25651 65 121 4 chrX 17039788 17042611 -159931529 - L1P LINE L1 -1488 4658 1327 2833 16 0 0 chrX 17042611 17042922 -159931218 + AluY SINE Alu 1 311 0 25651 65 121 4 chrX 17042922 17043676 -159930464 - L1P LINE L1 -4819 1327 663 1114 181 0 15 chrX 17043789 17043994 -159930146 - L1M4 LINE L1 -451 5733 5532 2827 129 0 63 chrX 17045561 17046049 -159928091 - MLT1C LTR MaLR 0 467 11 228 317 98 30 chrX 17047434 17047598 -159926542 - MER5B DNA MER1_type 0 178 4 220 322 119 34 chrX 17047982 17048100 -159926040 + L2 LINE L2 3129 3256 -16 5592 106 25 5 chrX 17048124 17048914 -159925226 - L1MA3 LINE L1 -4 6301 5496 2376 169 4 4 chrX 17048921 17049377 -159924763 - L1MA3 LINE L1 -1467 4679 4224 227 292 26 35 chrX 17049595 17049708 -159924432 + MIR SINE MIR 54 165 -97 746 209 43 12 chrX 17050538 17050701 -159923439 + MER5A DNA MER1_type 16 183 -6 1768 169 3 17 chrX 17050814 17051116 -159923024 + AluJo SINE Alu 6 303 -9 29 0 0 0 chrX 17052982 17053011 -159921129 + AT_rich Low_complexity Low_complexity 1 29 0 1591 180 27 20 chrX 17053147 17053442 -159920698 + AluJo SINE Alu 1 297 -15 330 26 0 0 chrX 17054366 17054405 -159919735 + (CA)n Simple_repeat Simple_repeat 1 39 0 223 88 18 53 chrX 17054824 17054881 -159919259 + (CCCCCA)n Simple_repeat Simple_repeat 1 55 0 192 40 0 0 chrX 17056173 17056198 -159917942 + (GA)n Simple_repeat Simple_repeat 1 25 0 404 322 20 0 chrX 17056846 17056998 -159917142 + (TATG)n Simple_repeat Simple_repeat 4 158 0 2142 70 37 0 chrX 17057319 17057438 -159916702 + AluY SINE Alu 2 115 -201 315 0 0 0 chrX 17057438 17057473 -159916667 + (CA)n Simple_repeat Simple_repeat 2 36 0 2142 70 37 0 chrX 17057473 17057658 -159916482 + AluY SINE Alu 115 316 0 2109 91 21 11 chrX 17058009 17058296 -159915844 - AluSc SINE Alu -19 290 1 254 106 21 0 chrX 17058801 17058848 -159915292 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 296 329 103 34 chrX 17059190 17059336 -159914804 + MIR3 SINE MIR 2 157 -51 267 292 148 68 chrX 17060080 17060316 -159913824 - L3 LINE CR1 -60 1517 1263 437 244 25 42 chrX 17060380 17060499 -159913641 + L2 LINE L2 3189 3305 -8 310 106 0 0 chrX 17060510 17060557 -159913583 - MIR SINE MIR -105 157 111 223 168 0 109 chrX 17060924 17061025 -159913115 + A-rich Low_complexity Low_complexity 2 91 0 22 56 0 0 chrX 17061642 17061678 -159912462 + AT_rich Low_complexity Low_complexity 1 36 0 305 289 21 31 chrX 17062576 17062673 -159911467 + MIR3 SINE MIR 79 174 -34 441 36 0 0 chrX 17064044 17064099 -159910041 + (TG)n Simple_repeat Simple_repeat 1 55 0 201 74 0 0 chrX 17064166 17064193 -159909947 + (T)n Simple_repeat Simple_repeat 1 27 0 856 182 0 0 chrX 17066287 17066462 -159907678 + FLAM_C SINE Alu 2 176 0 1050 159 0 0 chrX 17066472 17066635 -159907505 + FRAM SINE Alu 1 160 -16 192 40 0 0 chrX 17068266 17068291 -159905849 + (T)n Simple_repeat Simple_repeat 1 25 0 2193 103 0 13 chrX 17069776 17070076 -159904064 - AluSx SINE Alu -16 296 1 253 287 148 9 chrX 17072858 17072973 -159901167 - L2 LINE L2 -6 3307 3177 237 283 69 123 chrX 17072976 17073252 -159900888 - L2 LINE L2 -1 3271 3011 302 272 124 63 chrX 17073710 17074089 -159900051 - MLT1J LTR MaLR 0 511 110 186 143 0 0 chrX 17074162 17074197 -159899943 + (TG)n Simple_repeat Simple_repeat 2 36 0 2448 64 7 3 chrX 17075004 17075302 -159898838 + AluSp SINE Alu 1 299 -14 1900 60 21 0 chrX 17075444 17075679 -159898461 - L1MA1 LINE L1 -8 6294 6055 2266 199 31 8 chrX 17075950 17076432 -159897708 - Charlie4a DNA MER1_type 0 508 16 913 292 94 45 chrX 17077205 17077673 -159896467 - L2 LINE L2 -219 3094 2577 1920 166 61 33 chrX 17077673 17078034 -159896106 - MLT1A2 LTR MaLR 0 374 4 913 292 94 45 chrX 17078034 17078165 -159895975 - L2 LINE L2 -736 2577 2454 212 316 146 28 chrX 17078403 17078615 -159895525 + MIR SINE MIR 12 248 -14 2267 98 0 10 chrX 17078631 17078975 -159895165 - AluSx SINE Alu 0 312 1 285 263 115 21 chrX 17079082 17079205 -159894935 - MER5B DNA MER1_type -3 175 61 887 122 64 6 chrX 17079207 17079363 -159894777 - Charlie1 DNA MER1_type -178 2583 2419 292 209 0 15 chrX 17079384 17079451 -159894689 + MER5B DNA MER1_type 113 178 0 235 278 0 0 chrX 17079591 17079645 -159894495 - MIR SINE MIR -3 259 206 435 227 209 0 chrX 17079880 17079990 -159894150 + L2 LINE L2 3134 3266 -6 2174 113 10 3 chrX 17080634 17080935 -159893205 + AluSx SINE Alu 1 303 -9 1500 275 15 10 chrX 17080999 17081388 -159892752 - LTR16C LTR ERVL -10 481 91 2355 135 0 6 chrX 17083176 17083532 -159890608 - MER47A DNA MER2_type 0 366 13 558 256 161 22 chrX 17083769 17084043 -159890097 - LTR50 LTR ERVL 0 795 484 502 195 55 47 chrX 17084269 17084397 -159889743 - LTR50 LTR ERVL -650 145 17 2405 74 0 0 chrX 17084680 17084976 -159889164 - AluSx SINE Alu -16 296 1 187 345 138 14 chrX 17086239 17086384 -159887756 + L2 LINE L2 3102 3264 -8 * 280 259 58 58 chrX 17086358 17086497 -159887643 + MIR SINE MIR 114 252 -10 252 200 178 33 chrX 17086903 17086993 -159887147 + L2 LINE L2 3169 3271 -42 866 300 29 47 chrX 17086997 17087380 -159886760 + MLT1H LTR MaLR 3 378 -171 193 176 0 0 chrX 17087515 17087549 -159886591 + L2 LINE L2 3280 3313 0 195 347 0 14 chrX 17087635 17087707 -159886433 + MIR3 SINE MIR 3 73 -135 431 320 37 33 chrX 17088818 17089062 -159885078 + MIR SINE MIR 6 250 -12 44 35 0 0 chrX 17090643 17090701 -159883439 + AT_rich Low_complexity Low_complexity 1 58 0 2271 101 0 3 chrX 17090935 17091233 -159882907 - AluSg SINE Alu -13 297 1 185 128 0 26 chrX 17092575 17092614 -159881526 + (TTA)n Simple_repeat Simple_repeat 1 38 0 183 42 0 0 chrX 17092785 17092809 -159881331 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 622 263 41 18 chrX 17093314 17093485 -159880655 - MLT1J2 LTR MaLR 0 450 276 550 195 172 8 chrX 17093481 17093609 -159880531 - MLT1J2 LTR MaLR -296 154 6 * 212 339 0 0 chrX 17094054 17094116 -159880024 + L3 LINE CR1 1115 1176 -401 * 814 284 159 29 chrX 17094112 17094685 -159879455 - L2 LINE L2 -2 3311 2647 555 268 181 45 chrX 17094987 17095323 -159878817 + MLT1J LTR MaLR 111 492 -19 244 285 76 35 chrX 17095457 17095601 -159878539 + L2 LINE L2 3042 3191 -122 350 219 24 0 chrX 17096258 17096340 -159877800 - MLT1H1 LTR MaLR -2 553 470 234 304 0 0 chrX 17096352 17096421 -159877719 + MIR SINE MIR 186 254 -8 213 39 0 0 chrX 17096788 17096814 -159877326 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 387 115 10 83 chrX 17097641 17097737 -159876403 + Charlie7 DNA MER1_type 45 133 -2479 354 114 267 48 chrX 17097744 17097849 -159876291 + MER53 DNA DNA 1 128 -61 817 206 82 113 chrX 17098001 17098462 -159875678 + Charlie7 DNA MER1_type 2166 2612 0 2385 93 0 3 chrX 17098545 17098846 -159875294 - AluSx SINE Alu -12 300 1 719 213 101 11 chrX 17100352 17100540 -159873600 + MER3 DNA MER1_type 5 209 0 460 327 57 65 chrX 17101310 17101707 -159872433 - L2 LINE L2 -1 3312 2900 2344 70 0 0 chrX 17101707 17102014 -159872126 - AluSx SINE Alu 0 307 1 460 327 57 65 chrX 17102014 17102247 -159871893 - L2 LINE L2 -413 2900 2667 269 316 117 54 chrX 17102879 17103195 -159870945 + L2 LINE L2 2937 3272 0 865 223 148 13 chrX 17103430 17103659 -159870481 + MIR SINE MIR 3 262 0 2176 228 67 13 chrX 17104082 17104634 -159869506 - L1ME3A LINE L1 -1 6169 5588 278 246 0 0 chrX 17104641 17104698 -159869442 + MER5B DNA MER1_type 122 178 0 515 231 253 11 chrX 17105370 17105552 -159868588 + MIR SINE MIR 37 262 0 298 349 60 0 chrX 17106234 17106383 -159867757 - MIR SINE MIR -11 251 94 296 330 11 0 chrX 17107100 17107188 -159866952 - L2 LINE L2 0 3313 3225 256 224 53 40 chrX 17107407 17107483 -159866657 + MER5B DNA MER1_type 2 78 -100 641 207 72 42 chrX 17107995 17108188 -159865952 + MIR SINE MIR 64 262 0 296 272 11 11 chrX 17108440 17108532 -159865608 + MER5A DNA MER1_type 3 94 -95 3493 185 88 111 chrX 17109928 17110309 -159863831 - L1MD2 LINE L1 -2 6357 5969 543 160 0 53 chrX 17110309 17110403 -159863737 + FLAM SINE Alu 39 127 -16 3493 185 88 111 chrX 17110403 17111024 -159863116 - L1MD2 LINE L1 -390 5969 5287 3215 171 21 5 chrX 17111024 17111607 -159862533 - L1MB4 LINE L1 0 6180 5589 1484 170 34 19 chrX 17111607 17112047 -159862093 + L1MB7 LINE L1 5082 5528 -650 448 183 0 11 chrX 17112046 17112153 -159861987 - L1MD2 LINE L1 -845 5301 5204 * 6109 97 3 9 chrX 17112168 17113026 -159861114 - L1PA14 LINE L1 -7 6154 5302 892 211 11 22 chrX 17115820 17116005 -159858135 - MER5A DNA MER1_type -6 183 1 402 284 177 0 chrX 17116889 17117030 -159857110 + MER5A DNA MER1_type 9 174 -15 414 0 0 0 chrX 17117699 17117745 -159856395 + (TG)n Simple_repeat Simple_repeat 1 46 0 621 226 14 104 chrX 17117976 17118197 -159855943 - MER102b DNA MER1_type -8 333 133 358 234 194 0 chrX 17120771 17120895 -159853245 + L1ME4a LINE L1 5795 5942 -179 788 188 17 17 chrX 17121634 17121815 -159852325 - MER53 DNA DNA 0 189 9 505 176 19 0 chrX 17122100 17122208 -159851932 - L1MB8 LINE L1 -2 6176 6067 1332 247 22 6 chrX 17122494 17122859 -159851281 + L1MB7 LINE L1 5726 6096 -88 264 316 147 7 chrX 17123112 17123248 -159850892 + MIR SINE MIR 56 210 -52 345 241 154 36 chrX 17124682 17124854 -159849286 + L1ME LINE L1 2418 2617 -3923 1484 162 120 0 chrX 17124854 17125163 -159848977 + MER7A DNA MER2_type 1 344 -2 345 241 154 36 chrX 17125163 17125185 -159848955 + L1ME LINE L1 2617 2635 -3905 227 284 98 48 chrX 17125772 17126191 -159847949 + L1ME LINE L1 4464 4903 -1637 397 290 117 51 chrX 17126379 17126661 -159847479 + L1ME LINE L1 5144 5406 -1152 2038 126 10 10 chrX 17126661 17126955 -159847185 - AluSx SINE Alu -18 294 1 397 290 117 51 chrX 17126955 17127611 -159846529 + L1ME LINE L1 5406 6157 -401 2226 72 61 3 chrX 17127611 17127904 -159846236 + AluSx SINE Alu 1 310 -2 397 290 117 51 chrX 17127904 17127969 -159846171 + L1ME LINE L1 6157 6216 -342 21 0 0 0 chrX 17129010 17129031 -159845109 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 17129413 17129436 -159844704 + AT_rich Low_complexity Low_complexity 1 23 0 33 43 0 0 chrX 17129531 17129578 -159844562 + AT_rich Low_complexity Low_complexity 1 47 0 264 176 78 0 chrX 17130166 17130217 -159843923 - LTR40a LTR ERVL -365 154 100 243 299 26 26 chrX 17130220 17130337 -159843803 - MER96 DNA MER1_type? -5 170 54 1053 163 22 0 chrX 17130337 17130515 -159843625 - AluJo SINE Alu -9 303 122 22859 161 19 19 chrX 17130518 17134177 -159839963 - L1PA11 LINE L1 -5 7607 3947 2251 109 10 6 chrX 17134177 17134489 -159839651 - AluSq SINE Alu 0 313 1 22859 161 19 19 chrX 17134489 17136943 -159837197 - L1PA11 LINE L1 -3665 3947 143 284 214 0 0 chrX 17136952 17137008 -159837132 + MER96 DNA MER1_type? 120 175 0 * 320 253 152 0 chrX 17137008 17137100 -159837040 - LTR40a LTR ERVL -411 108 2 494 194 0 0 chrX 17137234 17137327 -159836813 + L1ME1 LINE L1 5611 5703 -463 3530 131 5 8 chrX 17137344 17137940 -159836200 - L1MA6 LINE L1 0 6300 5707 1289 146 11 60 chrX 17137940 17138221 -159835919 - L1MA7 LINE L1 -243 6048 5782 537 121 0 0 chrX 17138223 17138306 -159835834 + (TG)n Simple_repeat Simple_repeat 2 84 0 4719 158 18 5 chrX 17138309 17139611 -159834529 - L1MA7 LINE L1 -498 5793 4472 637 201 50 92 chrX 17139611 17139914 -159834226 + L1ME1 LINE L1 5697 5986 -180 605 209 7 20 chrX 17139914 17140067 -159834073 + L1MA10 LINE L1 6181 6331 -3 230 254 136 27 chrX 17141414 17141524 -159832616 - MLT1L LTR MaLR -326 289 168 545 248 93 50 chrX 17141784 17142129 -159832011 + MLT1H LTR MaLR 104 542 -13 283 292 34 11 chrX 17142414 17142503 -159831637 + L2 LINE L2 3223 3313 0 2539 140 19 9 chrX 17142682 17143110 -159831030 + MSTB1 LTR MaLR 1 432 0 268 281 83 16 chrX 17144059 17144251 -159829889 + MLT1I LTR MaLR 50 133 -276 321 268 21 31 chrX 17144615 17144712 -159829428 - MIR SINE MIR -38 224 129 1530 162 3 54 chrX 17144712 17145076 -159829064 - MER4A LTR ERV1 0 664 261 536 152 0 10 chrX 17145076 17145175 -159828965 - MER4A LTR ERV1 -566 98 1 15108 95 45 25 chrX 17145180 17145474 -159828666 - MER4A-int LTR ERV1 -1 6597 6310 2053 108 45 0 chrX 17145474 17145761 -159828379 + AluSg SINE Alu 1 300 -10 15108 95 45 25 chrX 17145761 17148002 -159826138 - MER4A-int LTR ERV1 -288 6310 4012 219 36 0 0 chrX 17148002 17148030 -159826110 + (T)n Simple_repeat Simple_repeat 1 28 0 40987 31 21 1 chrX 17148031 17154061 -159820079 - L1HS LINE L1 0 6155 1 951 108 38 16 chrX 17154061 17154247 -159819893 - MER4A-int LTR ERV1 -2572 4026 3837 * 6746 95 153 111 chrX 17154246 17155477 -159818663 - MER4A-int LTR ERV1 -2917 3681 2503 2050 82 4 8 chrX 17155477 17155745 -159818395 - AluSp SINE Alu 0 313 47 6746 95 153 111 chrX 17155745 17156589 -159817551 - MER4A-int LTR ERV1 -4095 2503 1696 2367 49 0 3 chrX 17156589 17156920 -159817220 + AluY SINE Alu 1 330 0 6746 95 153 111 chrX 17156920 17158113 -159816027 - MER4A-int LTR ERV1 -4902 1696 2 1308 143 0 9 chrX 17158117 17158327 -159815813 - MER4A LTR ERV1 0 664 457 378 342 53 16 chrX 17158840 17159030 -159815110 + MIR SINE MIR 28 224 -38 2391 143 19 21 chrX 17159453 17159778 -159814362 - MSTB LTR MaLR -1 425 100 2348 119 11 3 chrX 17159778 17160139 -159814001 - THE1B LTR MaLR 0 364 1 2391 143 19 21 chrX 17160139 17160239 -159813901 - MSTB LTR MaLR -326 100 1 423 260 142 18 chrX 17160254 17160423 -159813717 + MIR SINE MIR 12 201 -61 268 261 14 14 chrX 17161561 17161630 -159812510 + L2 LINE L2 3223 3291 -22 357 24 0 0 chrX 17161646 17161688 -159812452 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 387 244 144 112 chrX 17163119 17163521 -159810619 - MLT1H LTR MaLR -127 422 8 218 302 52 9 chrX 17163656 17163772 -159810368 + CT-rich Low_complexity Low_complexity 4 124 0 227 263 92 13 chrX 17164891 17164967 -159809173 + MIR SINE MIR 104 185 -77 2451 84 0 0 chrX 17165234 17165543 -159808597 + AluSg SINE Alu 1 309 -1 297 0 0 0 chrX 17166099 17166132 -159808008 + (TTA)n Simple_repeat Simple_repeat 2 34 0 861 213 50 20 chrX 17166307 17166509 -159807631 - MER3 DNA MER1_type 0 209 2 744 186 90 34 chrX 17167112 17167289 -159806851 + MER5A DNA MER1_type 3 189 0 366 23 0 0 chrX 17167335 17167378 -159806762 + (TG)n Simple_repeat Simple_repeat 2 44 0 2295 102 3 0 chrX 17167428 17167733 -159806407 + AluSg SINE Alu 1 306 -4 511 255 56 6 chrX 17168696 17168857 -159805283 - MIR SINE MIR -13 249 81 604 217 173 48 chrX 17168990 17169239 -159804901 - MLT1J2 LTR MaLR -132 318 39 1346 106 111 4 chrX 17169288 17169523 -159804617 + THE1C LTR MaLR 116 375 0 2478 74 3 0 chrX 17170483 17170782 -159803358 - AluSp SINE Alu -13 300 1 15089 128 23 8 chrX 17170811 17173192 -159800948 + Tigger1 DNA MER2_type 1 2418 0 375 250 73 55 chrX 17175455 17175619 -159798521 + LTR33 LTR ERVL 14 180 -341 373 277 50 25 chrX 17175944 17176063 -159798077 - L2 LINE L2 0 3272 3151 1514 196 95 17 chrX 17176746 17177093 -159797047 - MLT1A2 LTR MaLR 0 374 1 679 308 43 24 chrX 17177354 17177682 -159796458 + LTR16C LTR ERVL 158 491 0 7277 43 0 5 chrX 17177818 17178796 -159795344 - L1PA8 LINE L1 -2 6170 5198 676 244 36 6 chrX 17178941 17179109 -159795031 - MER5B DNA MER1_type 0 178 6 631 174 29 51 chrX 17179120 17179258 -159794882 + MER58 DNA MER1_type 2 136 -205 1211 304 9 12 chrX 17181100 17181521 -159792619 + LTR16A LTR ERVL 25 444 -6 374 291 199 7 chrX 17181576 17181717 -159792423 - MIR SINE MIR -93 169 2 414 301 85 60 chrX 17183093 17183432 -159790708 - L2 LINE L2 -6 3307 2881 4805 99 18 15 chrX 17183518 17184237 -159789903 - L1PA10 LINE L1 -1 6167 5447 780 152 51 7 chrX 17184388 17184526 -159789614 - MER46A DNA MER2_type 0 236 93 619 198 76 13 chrX 17184726 17184754 -159789386 - MER5B DNA MER1_type -3 175 150 1837 159 0 23 chrX 17184754 17185056 -159789084 - AluJo SINE Alu -17 295 1 619 198 76 13 chrX 17185056 17185184 -159788956 - MER5B DNA MER1_type -28 150 9 895 305 30 3 chrX 17185883 17186217 -159787923 - LTR16C LTR ERVL -60 431 89 213 178 0 0 chrX 17188045 17188090 -159786050 + T-rich Low_complexity Low_complexity 1 45 0 7615 28 3 0 chrX 17188090 17189227 -159784913 - L1PA4 LINE L1 0 6155 5019 716 195 95 0 chrX 17189840 17190009 -159784131 - MER53 DNA DNA -3 186 2 316 284 30 45 chrX 17190319 17190453 -159783687 + MIR SINE MIR 116 247 -15 189 139 0 0 chrX 17190469 17190512 -159783628 + (CAT)n Simple_repeat Simple_repeat 2 44 0 338 171 85 24 chrX 17191094 17191176 -159782964 - L1MD3 LINE L1 -8 7987 7901 189 0 0 0 chrX 17192353 17192374 -159781766 + (A)n Simple_repeat Simple_repeat 1 21 0 1070 277 0 36 chrX 17192391 17192720 -159781420 - MER102a DNA MER1_type -5 325 9 2567 49 0 3 chrX 17192974 17193279 -159780861 - AluY SINE Alu -7 304 1 342 0 0 0 chrX 17193491 17193529 -159780611 + (CA)n Simple_repeat Simple_repeat 2 39 0 1517 177 7 26 chrX 17193613 17193884 -159780256 + AluJo SINE Alu 12 277 -35 401 227 20 107 chrX 17194306 17194456 -159779684 - MIR SINE MIR -75 187 51 678 155 139 16 chrX 17195658 17195821 -159778319 + MER5A DNA MER1_type 4 189 0 237 356 0 0 chrX 17195841 17195914 -159778226 + L2 LINE L2 3227 3299 -14 732 189 31 105 chrX 17196023 17196086 -159778054 - MER5B DNA MER1_type -1 177 111 1962 106 16 10 chrX 17196086 17196398 -159777742 - L1MA3 LINE L1 0 6305 5992 732 189 31 105 chrX 17196398 17196525 -159777615 - MER5B DNA MER1_type -67 111 1 423 262 10 0 chrX 17197794 17197897 -159776243 - MLT1J LTR MaLR -315 196 93 345 24 0 0 chrX 17197909 17197951 -159776189 + (TG)n Simple_repeat Simple_repeat 1 42 0 812 281 58 11 chrX 17197976 17198254 -159775886 - LTR16C LTR ERVL -200 291 1 23 0 0 0 chrX 17198600 17198623 -159775517 + AT_rich Low_complexity Low_complexity 1 23 0 2560 43 0 0 chrX 17198824 17199129 -159775011 - AluY SINE Alu -3 308 4 279 0 0 0 chrX 17200180 17200211 -159773929 + (TG)n Simple_repeat Simple_repeat 2 32 0 215 137 59 0 chrX 17200425 17200476 -159773664 + (TA)n Simple_repeat Simple_repeat 1 54 0 1221 135 0 0 chrX 17200478 17200685 -159773455 - L1M4 LINE L1 -383 5791 5585 934 194 0 16 chrX 17200998 17201184 -159772956 - MER20 DNA MER1_type -6 213 31 366 283 137 58 chrX 17201216 17201580 -159772560 - MLT1J LTR MaLR -110 401 9 2547 68 0 0 chrX 17201800 17202108 -159772032 + AluSx SINE Alu 1 308 -4 180 47 47 47 chrX 17202651 17202694 -159771446 + (TATAA)n Simple_repeat Simple_repeat 1 43 0 1715 201 28 63 chrX 17202709 17203182 -159770958 + MLT1C LTR MaLR 10 465 -2 183 167 0 0 chrX 17203964 17204006 -159770134 + A-rich Low_complexity Low_complexity 3 44 0 3149 105 11 4 chrX 17204416 17204883 -159769257 + L1PA13 LINE L1 5690 6159 -4 1052 316 204 26 chrX 17204996 17205839 -159768301 - L3 LINE CR1 -104 1473 481 930 167 118 20 chrX 17205884 17206088 -159768052 + MER58A DNA MER1_type 1 224 0 3009 267 138 33 chrX 17206095 17207518 -159766622 + L2 LINE L2 1588 3155 -158 383 287 164 27 chrX 17207552 17208255 -159765885 + L1M4 LINE L1 2334 3132 -3014 5107 128 14 75 chrX 17208276 17209377 -159764763 - L1MA8 LINE L1 -4 6287 5254 2234 188 7 0 chrX 17209390 17209843 -159764297 + L1 LINE L1 4758 5213 -933 323 271 64 28 chrX 17209826 17210184 -159763956 + L1M4 LINE L1 3122 3492 -2654 * 1564 227 163 2 chrX 17211546 17212005 -159762135 - MLT1H LTR MaLR -10 539 7 25 31 0 0 chrX 17212892 17212924 -159761216 + AT_rich Low_complexity Low_complexity 1 32 0 2014 102 42 3 chrX 17212935 17213219 -159760921 + AluSx SINE Alu 1 295 -17 603 66 0 0 chrX 17213242 17213318 -159760822 - AluS SINE Alu -237 76 1 392 313 20 40 chrX 17213376 17213615 -159760525 + MIR SINE MIR 23 258 -4 251 299 52 0 chrX 17214093 17214170 -159759970 + L2 LINE L2 2412 2492 -822 226 352 0 0 chrX 17214326 17214414 -159759726 - MER117 DNA MER1_type -37 160 73 367 257 50 0 chrX 17214861 17214962 -159759178 - MLT1J2 LTR MaLR 0 450 345 27 0 0 0 chrX 17215119 17215146 -159758994 + AT_rich Low_complexity Low_complexity 1 27 0 390 153 0 0 chrX 17215346 17215418 -159758722 - L1PA16 LINE L1 0 6166 6095 435 335 53 31 chrX 17215577 17215896 -159758244 + L1M4 LINE L1 4896 5221 -925 2259 123 22 30 chrX 17217327 17217483 -159756657 + THE1B LTR MaLR 1 157 -207 2516 53 0 3 chrX 17217483 17217784 -159756356 - AluY SINE Alu -11 300 1 2259 123 22 30 chrX 17217784 17217994 -159756146 + THE1B LTR MaLR 157 364 0 228 35 0 0 chrX 17219302 17219331 -159754809 + (TC)n Simple_repeat Simple_repeat 2 30 0 2176 109 13 0 chrX 17219331 17219633 -159754507 - AluSx SINE Alu -6 306 1 314 230 123 35 chrX 17221328 17221477 -159752663 - MLT1L LTR MaLR -342 246 84 1965 177 53 19 chrX 17221514 17221926 -159752214 - MSTB LTR MaLR 0 426 1 245 280 104 40 chrX 17222777 17222902 -159751238 - MIR SINE MIR -63 199 67 375 257 82 98 chrX 17223351 17223534 -159750606 + MIR SINE MIR 32 211 -51 345 214 83 88 chrX 17224382 17224574 -159749566 - L1ME4a LINE L1 -180 5941 5751 2440 71 0 10 chrX 17225730 17226041 -159748099 + AluY SINE Alu 1 308 -3 300 27 0 0 chrX 17226095 17226132 -159748008 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 447 19 0 0 chrX 17226131 17226183 -159747957 + (GA)n Simple_repeat Simple_repeat 2 53 0 188 100 25 0 chrX 17226443 17226483 -159747657 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 226 312 11 32 chrX 17226603 17226696 -159747444 + L2 LINE L2 3223 3313 0 533 299 55 30 chrX 17227190 17227461 -159746679 + L2 LINE L2 2236 2513 -801 273 347 10 0 chrX 17227577 17227675 -159746465 + L2 LINE L2 3161 3259 -13 736 325 144 47 chrX 17228308 17228712 -159745428 + L2 LINE L2 925 1288 -2026 216 0 0 0 chrX 17228712 17228736 -159745404 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 736 325 144 47 chrX 17228736 17228861 -159745279 + L2 LINE L2 1288 1399 -1915 708 172 0 52 chrX 17228861 17228995 -159745145 - FLAM_A SINE Alu -6 127 1 736 325 144 47 chrX 17228995 17229607 -159744533 + L2 LINE L2 1399 2180 -1134 606 198 108 25 chrX 17229607 17229764 -159744376 + MER5B DNA MER1_type 3 172 -6 601 335 123 17 chrX 17229811 17230217 -159743923 + L2 LINE L2 2205 2653 -661 306 264 16 25 chrX 17230357 17230478 -159743662 - LTR67 LTR ERVL 0 557 438 457 246 17 0 chrX 17230620 17230738 -159743402 + MER94 DNA DNA 15 134 0 900 200 12 0 chrX 17230740 17230905 -159743235 + MLT1F LTR MaLR 361 527 -15 184 303 45 15 chrX 17230944 17231010 -159743130 + L2 LINE L2 3141 3208 -64 2238 118 3 0 chrX 17232398 17232702 -159741438 - AluSx SINE Alu -7 305 1 2349 80 6 13 chrX 17233069 17233382 -159740758 + AluY SINE Alu 1 311 0 2277 112 0 0 chrX 17234072 17234377 -159739763 + AluSc SINE Alu 1 305 -4 2234 78 3 20 chrX 17234607 17234782 -159739358 + AluSx SINE Alu 2 172 -140 1213 139 90 145 chrX 17234782 17235056 -159739084 - LTR7 LTR ERV1 0 450 211 2594 58 3 0 chrX 17235056 17235365 -159738775 + AluY SINE Alu 1 310 -1 1213 139 90 145 chrX 17235365 17235566 -159738574 - LTR7 LTR ERV1 -239 211 1 2234 78 3 20 chrX 17235566 17235684 -159738456 + AluSx SINE Alu 172 290 -22 620 254 51 0 chrX 17235684 17235822 -159738318 + MIR SINE MIR 22 166 -96 370 119 0 0 chrX 17235828 17235887 -159738253 + Alu SINE Alu 234 292 -8 329 229 12 12 chrX 17236110 17236193 -159737947 + MIR SINE MIR 162 244 -18 2258 107 0 13 chrX 17237420 17237730 -159736410 + AluSx SINE Alu 1 306 -6 2469 76 0 0 chrX 17238490 17238791 -159735349 - AluY SINE Alu -10 301 1 348 350 17 8 chrX 17238841 17239081 -159735059 - L1M3 LINE L1 -361 5810 5569 874 246 58 15 chrX 17239145 17239447 -159734693 + MLT1G LTR MaLR 1 272 -318 481 228 17 30 chrX 17239506 17239671 -159734469 + MLT1H1 LTR MaLR 420 553 -2 294 241 131 28 chrX 17239678 17239823 -159734317 - L1M3 LINE L1 -2331 5477 5318 1086 293 68 23 chrX 17239847 17240883 -159733257 - L1M3 LINE L1 -868 5278 4182 433 152 11 11 chrX 17242037 17242129 -159732011 + GA-rich Low_complexity Low_complexity 1 92 0 1118 221 102 48 chrX 17242348 17242382 -159731758 + Charlie7 DNA MER1_type 1862 1893 -719 1988 55 47 12 chrX 17242382 17242638 -159731502 - AluY SINE Alu -3 308 44 1118 221 102 48 chrX 17242638 17243283 -159730857 + Charlie7 DNA MER1_type 1893 2577 -35 463 197 7 117 chrX 17243292 17243362 -159730778 + L2 LINE L2 3192 3241 -72 913 263 0 13 chrX 17243362 17243586 -159730554 + MER58A DNA MER1_type 1 221 -3 463 197 7 117 chrX 17243586 17243652 -159730488 + L2 LINE L2 3241 3313 0 3559 158 80 74 chrX 17243748 17243971 -159730169 - L1MA9 LINE L1 0 6312 6092 1838 124 103 0 chrX 17243971 17244253 -159729887 + AluSx SINE Alu 1 311 -1 3559 158 80 74 chrX 17244253 17245287 -159728853 - L1MA9 LINE L1 -220 6092 5041 10566 150 23 44 chrX 17246346 17248380 -159725760 - Ricksha_c DNA DNA 0 2046 55 248 282 0 51 chrX 17249156 17249234 -159724906 - L2 LINE L2 -1 3312 3239 222 266 32 32 chrX 17249445 17249539 -159724601 + L3 LINE CR1 1478 1571 -6 2260 81 10 3 chrX 17249669 17249964 -159724176 - AluSp SINE Alu -16 297 1 236 208 0 21 chrX 17251752 17251800 -159722340 - LTR16C LTR ERVL -4 487 441 1553 265 152 4 chrX 17251801 17252315 -159721825 - MLT1G1 LTR MaLR 0 595 6 908 345 28 0 chrX 17252320 17252682 -159721458 - LTR16C LTR ERVL -47 444 73 1354 194 28 95 chrX 17253096 17253487 -159720653 + MLT1A1 LTR MaLR 1 365 0 338 302 26 0 chrX 17253524 17253640 -159720500 + MIR SINE MIR 78 196 -66 180 176 0 0 chrX 17254599 17254633 -159719507 + T-rich Low_complexity Low_complexity 1 34 0 972 249 39 28 chrX 17254715 17255149 -159718991 - MLT1H1 LTR MaLR -75 480 1 828 296 31 4 chrX 17255257 17255483 -159718657 + MIR SINE MIR 11 242 -20 2203 106 0 0 chrX 17256094 17256417 -159717723 + AluSx SINE Alu 1 323 0 207 326 43 43 chrX 17257469 17257610 -159716530 - MIR SINE MIR -66 196 56 475 292 96 14 chrX 17258642 17258861 -159715279 - MLT1J LTR MaLR -37 474 238 228 183 100 17 chrX 17259063 17259123 -159715017 - MLT1L LTR MaLR -549 66 2 2162 91 0 3 chrX 17259343 17259656 -159714484 - AluSq SINE Alu 0 312 1 461 280 17 2 chrX 17259841 17259975 -159714165 - MIR SINE MIR -63 145 20 2113 107 47 0 chrX 17259997 17260295 -159713845 - AluSq SINE Alu 0 313 2 328 299 62 10 chrX 17261531 17261628 -159712512 - MER91C DNA MER1_type -37 103 2 2410 78 3 0 chrX 17261989 17262282 -159711858 - AluSp SINE Alu -19 294 1 182 305 17 34 chrX 17262471 17262530 -159711610 + L2 LINE L2 3232 3289 -24 3787 115 21 16 chrX 17263118 17263693 -159710447 - MER4E LTR ERV1 0 779 202 2306 80 0 20 chrX 17263696 17263997 -159710143 + AluSq SINE Alu 1 295 -18 2191 101 10 3 chrX 17264005 17264311 -159709829 + AluSq SINE Alu 5 312 -1 201 182 0 0 chrX 17264311 17264366 -159709774 + (TA)n Simple_repeat Simple_repeat 1 55 0 1504 99 9 0 chrX 17264366 17264577 -159709563 - MER4E LTR ERV1 -566 213 1 502 252 126 6 chrX 17265601 17265760 -159708380 - MER5A DNA MER1_type -1 188 11 239 20 61 20 chrX 17265862 17265911 -159708229 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1616 186 3 26 chrX 17266353 17266486 -159707654 + AluJo SINE Alu 6 141 -171 2156 80 6 77 chrX 17266486 17266810 -159707330 + AluSx SINE Alu 1 301 -11 1616 186 3 26 chrX 17266810 17266983 -159707157 + AluJo SINE Alu 141 305 -7 391 289 101 80 chrX 17267204 17267958 -159706182 + HAL1 LINE L1 817 1586 -921 319 278 69 93 chrX 17267988 17268204 -159705936 + HAL1 LINE L1 2283 2493 -14 182 250 145 13 chrX 17268695 17268771 -159705369 + L3 LINE CR1 302 387 -1190 351 296 127 9 chrX 17269445 17269658 -159704482 + L3b LINE CR1 1103 1340 -243 669 266 97 41 chrX 17269779 17269811 -159704329 - MLT2B2 LTR ERVL -46 474 445 2236 83 0 10 chrX 17269811 17270111 -159704029 + AluSx SINE Alu 2 298 -14 669 266 97 41 chrX 17270111 17270376 -159703764 - MLT2B2 LTR ERVL -75 445 147 26 0 0 0 chrX 17270950 17270976 -159703164 + AT_rich Low_complexity Low_complexity 1 26 0 2508 76 0 3 chrX 17271314 17271628 -159702512 + AluSq SINE Alu 1 313 0 494 101 0 0 chrX 17271672 17271741 -159702399 + MADE1 DNA Mariner 12 80 0 254 314 0 0 chrX 17271940 17272058 -159702082 + A-rich Low_complexity Low_complexity 1 118 0 30 45 0 0 chrX 17272166 17272210 -159701930 + AT_rich Low_complexity Low_complexity 1 44 0 200 358 13 40 chrX 17272390 17272541 -159701599 - L2 LINE L2 -885 2429 2283 537 242 88 22 chrX 17273010 17273192 -159700948 - LTR16C LTR ERVL 0 491 298 328 279 135 0 chrX 17274395 17274506 -159699634 + L2 LINE L2 3147 3272 0 2319 100 3 0 chrX 17274656 17274957 -159699183 - AluSp SINE Alu -11 302 1 189 322 0 17 chrX 17275764 17275823 -159698317 + MIR SINE MIR 84 141 -67 2335 84 0 7 chrX 17276948 17277121 -159697019 - AluSp SINE Alu -7 306 134 2545 43 0 0 chrX 17277121 17277423 -159696717 - AluY SINE Alu -9 302 1 2335 84 0 7 chrX 17277423 17277557 -159696583 - AluSp SINE Alu -179 134 1 403 283 25 17 chrX 17278233 17278353 -159695787 - L2 LINE L2 -16 3256 3136 283 243 14 0 chrX 17279544 17279614 -159694526 - MLT1J2 LTR MaLR 0 450 380 919 244 122 18 chrX 17279645 17279924 -159694216 - MLT1J2 LTR MaLR -137 313 6 189 0 0 0 chrX 17280892 17280913 -159693227 + (T)n Simple_repeat Simple_repeat 1 21 0 256 250 0 0 chrX 17281024 17281084 -159693056 + GA-rich Low_complexity Low_complexity 1 60 0 2464 63 13 0 chrX 17281400 17281700 -159692440 - AluSp SINE Alu -9 304 1 966 231 89 0 chrX 17282283 17282552 -159691588 - L1MC4 LINE L1 -143 7899 7607 247 241 0 24 chrX 17282943 17282955 -159691185 + A-rich Low_complexity Low_complexity 1 12 -69 2036 125 0 7 chrX 17282955 17283243 -159690897 + AluSg SINE Alu 1 286 -24 247 241 0 24 chrX 17283243 17283313 -159690827 + A-rich Low_complexity Low_complexity 12 81 0 628 302 93 0 chrX 17283324 17283539 -159690601 + L3 LINE CR1 570 804 -773 2094 184 11 61 chrX 17283544 17284093 -159690047 + L1M4 LINE L1 4842 5356 -850 2404 78 7 0 chrX 17284093 17284402 -159689738 + AluY SINE Alu 1 311 0 2094 184 11 61 chrX 17284402 17284473 -159689667 + L1M4 LINE L1 5356 5429 -777 7007 164 67 72 chrX 17284490 17285477 -159688663 + L1MC3 LINE L1 6148 7191 -594 240 175 18 20 chrX 17285477 17285543 -159688597 + MLT1E LTR MaLR 65 161 -388 7007 164 67 72 chrX 17285543 17286126 -159688014 + L1MC3 LINE L1 7191 7775 -10 981 275 108 33 chrX 17286172 17286740 -159687400 + L2 LINE L2 2585 3183 -130 192 296 31 51 chrX 17286792 17286890 -159687250 + L2 LINE L2 3200 3295 -18 753 323 53 30 chrX 17286906 17287244 -159686896 + L3 LINE CR1 916 1261 -316 277 200 35 82 chrX 17287242 17287327 -159686813 - L2 LINE L2 -1 3312 3232 * 197 354 100 64 chrX 17287350 17287630 -159686510 + L3 LINE CR1 1284 1573 -4 216 204 0 0 chrX 17287738 17287782 -159686358 + T-rich Low_complexity Low_complexity 1 44 0 3312 39 2 0 chrX 17287791 17288197 -159685943 - L1PA7 LINE L1 -2 6152 5746 1441 264 50 32 chrX 17288679 17289115 -159685025 - LTR33 LTR ERVL -20 501 58 259 211 35 0 chrX 17289126 17289183 -159684957 + L2 LINE L2 2722 2780 -534 576 247 28 6 chrX 17289658 17289836 -159684304 + L1M4 LINE L1 2210 2391 -3755 426 241 122 19 chrX 17289896 17290207 -159683933 + L1M4 LINE L1 2980 3322 -2824 1112 263 117 23 chrX 17290214 17290881 -159683259 + L1M4 LINE L1 3390 4142 -2004 2065 112 0 7 chrX 17290937 17291253 -159682887 + AluSq SINE Alu 1 314 0 349 259 162 20 chrX 17291257 17291454 -159682686 + L1M4 LINE L1 4150 4374 -1772 322 285 81 46 chrX 17292019 17292279 -159681861 - L1MEd LINE L1 -4956 1163 895 11246 191 18 18 chrX 17292364 17295133 -159679007 - L1PA16 LINE L1 -1 6165 3398 2352 90 10 0 chrX 17295133 17295434 -159678706 - AluSq SINE Alu -7 306 3 11246 191 18 18 chrX 17295434 17295964 -159678176 - L1PA16 LINE L1 -2768 3398 2871 1880 118 0 14 chrX 17295964 17296243 -159677897 - AluSx SINE Alu -7 305 31 11246 191 18 18 chrX 17296243 17296545 -159677595 - L1PA16 LINE L1 -3295 2871 2571 21 71 0 0 chrX 17297035 17297077 -159677063 + AT_rich Low_complexity Low_complexity 1 42 0 3137 158 26 33 chrX 17298839 17299068 -159675072 + MER6A DNA MER2_type 1 230 -635 369 0 0 0 chrX 17299068 17299109 -159675031 + (TG)n Simple_repeat Simple_repeat 2 42 0 3137 158 26 33 chrX 17299109 17299488 -159674652 + MER6A DNA MER2_type 230 605 0 407 284 10 0 chrX 17300378 17300480 -159673660 + L3 LINE CR1 400 502 -1075 307 311 50 25 chrX 17300698 17300859 -159673281 + L1MEd LINE L1 990 1154 -4965 574 318 87 48 chrX 17300950 17301144 -159672996 - L1M4 LINE L1 -1220 4926 4741 2433 64 0 0 chrX 17301144 17301442 -159672698 - AluY SINE Alu -13 298 1 574 318 87 48 chrX 17301442 17302024 -159672116 - L1M4 LINE L1 -1405 4741 4104 188 156 44 67 chrX 17302059 17302104 -159672036 - L2 LINE L2 -2 3270 3227 595 325 50 60 chrX 17302197 17302634 -159671506 - L2 LINE L2 -56 3257 2825 615 255 107 20 chrX 17302660 17302856 -159671284 - L2 LINE L2 -1081 2233 2021 225 195 0 0 chrX 17302843 17302884 -159671256 - L2 LINE L2 -45 3227 3187 * 567 343 140 43 chrX 17302945 17303601 -159670539 - L1M4 LINE L1 -2082 4064 3345 334 258 102 59 chrX 17303612 17303868 -159670272 - L1M4 LINE L1 -2877 3269 3003 882 187 0 0 chrX 17304271 17304441 -159669699 - AluJb SINE Alu 0 303 134 2181 89 51 3 chrX 17304441 17304734 -159669406 - AluSp SINE Alu -6 307 1 1030 325 99 11 chrX 17304854 17305307 -159668833 + L3 LINE CR1 1042 1534 -43 500 313 69 71 chrX 17305768 17305849 -159668291 - L1MEd LINE L1 -5345 774 694 1575 101 190 16 chrX 17305849 17306107 -159668033 - AluSp SINE Alu -10 303 1 500 313 69 71 chrX 17306107 17306504 -159667636 - L1MEd LINE L1 -5425 694 297 3146 215 74 28 chrX 17306559 17307379 -159666761 + L1ME1 LINE L1 5259 6116 -50 265 159 70 45 chrX 17307413 17307570 -159666570 + (TTATA)n Simple_repeat Simple_repeat 5 165 0 24 67 0 0 chrX 17307583 17307628 -159666512 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chrX 17307735 17307756 -159666384 + AT_rich Low_complexity Low_complexity 1 21 0 523 332 62 13 chrX 17307984 17308210 -159665930 - MIR SINE MIR -7 255 19 4242 171 42 13 chrX 17308264 17309218 -159664922 - L1MB1 LINE L1 -75 6093 5110 1096 125 99 39 chrX 17309209 17309288 -159664852 + L1MA10 LINE L1 6082 6155 -179 * 243 88 0 0 chrX 17309288 17309322 -159664818 + (CA)n Simple_repeat Simple_repeat 1 34 0 1096 125 99 39 chrX 17309322 17309474 -159664666 + L1MA10 LINE L1 6155 6327 -7 1630 185 76 50 chrX 17309670 17310053 -159664087 + MSTD LTR MaLR 1 393 -3 258 382 50 23 chrX 17310499 17310719 -159663421 - L2 LINE L2 -479 2835 2610 1386 138 3 0 chrX 17510976 17514074 -159460066 - ALR/Alpha Satellite centromeric -2 3108 1 1409 154 6 1 chrX 17514179 17522856 -159451284 + ALR/Alpha Satellite centromeric 1 8719 -14 1286 164 7 1 chrX 17522867 17524638 -159449502 + ALR/Alpha Satellite centromeric 1 1781 -12 8454 32 0 0 chrX 17524640 17526425 -159447715 - L1HS LINE L1 0 6155 4370 1162 182 7 2 chrX 17526525 17529685 -159444455 + ALR/Alpha Satellite centromeric 1 3177 -14 1213 178 6 2 chrX 17529696 17531550 -159442590 + ALR/Alpha Satellite centromeric 1 1860 -14 1195 181 5 1 chrX 17531561 17533416 -159440724 + ALR/Alpha Satellite centromeric 1 1862 -14 1130 185 6 1 chrX 17533427 17535281 -159438859 + ALR/Alpha Satellite centromeric 1 1862 -14 1186 179 6 1 chrX 17535292 17537146 -159436994 + ALR/Alpha Satellite centromeric 1 1863 -14 1193 178 5 1 chrX 17537157 17539012 -159435128 + ALR/Alpha Satellite centromeric 1 1862 -14 1201 179 5 1 chrX 17539023 17540878 -159433262 + ALR/Alpha Satellite centromeric 1 1862 -14 1149 182 6 1 chrX 17540889 17542743 -159431397 + ALR/Alpha Satellite centromeric 1 1862 -14 1217 184 6 1 chrX 17542754 17544624 -159429516 + ALR/Alpha Satellite centromeric 1 1879 -82 1190 175 7 2 chrX 17544725 17548429 -159425711 + ALR/Alpha Satellite centromeric 1 3725 -14 1213 176 6 2 chrX 17548440 17550295 -159423845 + ALR/Alpha Satellite centromeric 1 1862 -14 1195 184 5 1 chrX 17550306 17552161 -159421979 + ALR/Alpha Satellite centromeric 1 1862 -14 923 189 19 1 chrX 17552172 17552608 -159421532 + ALR/Alpha Satellite centromeric 1 443 -69 1140 191 4 3 chrX 17552716 17554167 -159419973 + ALR/Alpha Satellite centromeric 1 1452 -14 1201 174 5 2 chrX 17554178 17556033 -159418107 + ALR/Alpha Satellite centromeric 1 1860 -14 1217 178 5 1 chrX 17556044 17557899 -159416241 + ALR/Alpha Satellite centromeric 1 1862 -14 1201 178 5 1 chrX 17557910 17559765 -159414375 + ALR/Alpha Satellite centromeric 1 1862 -14 1193 178 5 1 chrX 17559776 17561631 -159412509 + ALR/Alpha Satellite centromeric 1 1862 -14 1209 185 6 1 chrX 17561642 17563496 -159410644 + ALR/Alpha Satellite centromeric 1 1862 -14 1160 185 6 1 chrX 17563507 17565361 -159408779 + ALR/Alpha Satellite centromeric 1 1862 -14 1201 184 6 2 chrX 17565372 17567226 -159406914 + ALR/Alpha Satellite centromeric 1 1862 -14 1201 178 6 1 chrX 17567237 17570958 -159403182 + ALR/Alpha Satellite centromeric 1 3738 -14 1197 175 6 1 chrX 17570969 17572823 -159401317 + ALR/Alpha Satellite centromeric 1 1862 -14 1188 180 5 1 chrX 17572834 17574689 -159399451 + ALR/Alpha Satellite centromeric 1 1862 -14 994 155 30 1 chrX 17574700 17575297 -159398843 + ALR/Alpha Satellite centromeric 1 614 -70 1216 184 7 1 chrX 17575401 17577529 -159396611 + ALR/Alpha Satellite centromeric 1 2139 -14 1217 183 6 1 chrX 17577540 17579394 -159394746 + ALR/Alpha Satellite centromeric 1 1862 -14 1186 181 6 1 chrX 17579405 17583125 -159391015 + ALR/Alpha Satellite centromeric 1 3738 -14 1203 177 9 2 chrX 17583136 17587531 -159386609 + ALR/Alpha Satellite centromeric 1 4424 -14 1205 176 7 2 chrX 17587542 17589665 -159384475 + ALR/Alpha Satellite centromeric 1 2133 -14 1166 172 8 2 chrX 17589676 17591798 -159382342 + ALR/Alpha Satellite centromeric 1 2133 -14 1198 176 6 2 chrX 17591809 17593667 -159380473 + ALR/Alpha Satellite centromeric 1 1866 -14 1216 172 7 2 chrX 17593678 17595710 -159378430 + ALR/Alpha Satellite centromeric 1 2043 -20 943 180 10 4 chrX 17595732 17596336 -159377804 + ALR/Alpha Satellite centromeric 1 607 -15 1244 152 6 1 chrX 17596348 17600592 -159373548 + ALR/Alpha Satellite centromeric 1 4266 0 918 203 8 3 chrX 17600697 17601435 -159372705 + ALR/Alpha Satellite centromeric 1 741 -16 1178 178 6 2 chrX 17601448 17603302 -159370838 + ALR/Alpha Satellite centromeric 1 1862 -14 1201 175 6 2 chrX 17603313 17605168 -159368972 + ALR/Alpha Satellite centromeric 1 1862 -14 1230 170 8 3 chrX 17605179 17607034 -159367106 + ALR/Alpha Satellite centromeric 1 1862 -14 1230 171 6 2 chrX 17607045 17608900 -159365240 + ALR/Alpha Satellite centromeric 1 1862 -14 1223 172 10 2 chrX 17608911 17610890 -159363250 + ALR/Alpha Satellite centromeric 1 1994 -55 1230 163 7 2 chrX 17610991 17612708 -159361432 - ALR/Alpha Satellite centromeric 0 1725 1 1216 165 8 3 chrX 17612719 17614574 -159359566 - ALR/Alpha Satellite centromeric 0 1865 1 1230 167 8 3 chrX 17614585 17616440 -159357700 - ALR/Alpha Satellite centromeric 0 1864 1 1213 169 6 1 chrX 17616451 17618306 -159355834 - ALR/Alpha Satellite centromeric 0 1864 1 1160 170 7 1 chrX 17618317 17620172 -159353968 - ALR/Alpha Satellite centromeric 0 1865 1 1201 166 7 1 chrX 17620183 17622038 -159352102 - ALR/Alpha Satellite centromeric 0 1864 1 1255 172 6 1 chrX 17622049 17623903 -159350237 - ALR/Alpha Satellite centromeric 0 1864 1 1130 170 7 1 chrX 17623914 17625769 -159348371 - ALR/Alpha Satellite centromeric 0 1865 1 1255 166 6 1 chrX 17625780 17627635 -159346505 - ALR/Alpha Satellite centromeric 0 1864 1 1203 169 6 1 chrX 17627646 17629501 -159344639 - ALR/Alpha Satellite centromeric 0 1864 1 1162 174 7 2 chrX 17629512 17631365 -159342775 - ALR/Alpha Satellite centromeric 0 1862 1 1195 174 9 2 chrX 17631376 17633340 -159340800 - ALR/Alpha Satellite centromeric -14 1977 1 3249 31 5 0 chrX 17633340 17633723 -159340417 + L1P LINE L1 4007 4391 -1755 866 191 18 0 chrX 17633827 17633995 -159340145 - ALR/Alpha Satellite centromeric 0 171 1 1169 167 8 1 chrX 17634006 17635350 -159338790 - ALR/Alpha Satellite centromeric 0 1352 1 1179 175 6 1 chrX 17635361 17637216 -159336924 - ALR/Alpha Satellite centromeric 0 1864 1 1217 172 8 2 chrX 17637227 17640947 -159333193 - ALR/Alpha Satellite centromeric 0 3743 1 1111 183 9 2 chrX 17640958 17642887 -159331253 - ALR/Alpha Satellite centromeric 0 1943 1 1686 196 62 17 chrX 17692887 17693305 -159280835 - L1M4 LINE L1 -1289 4857 4421 635 178 14 62 chrX 17693303 17693449 -159280691 - L1M4 LINE L1 -2012 4134 3996 * 420 20 0 0 chrX 17693950 17693999 -159280141 + (CA)n Simple_repeat Simple_repeat 2 50 0 1508 164 47 3 chrX 17694465 17694764 -159279376 + L1MA7 LINE L1 5973 6284 -7 345 314 50 0 chrX 17695467 17695607 -159278533 + L1ME LINE L1 37 183 -5887 234 317 152 0 chrX 17696063 17696227 -159277913 + L1ME LINE L1 2430 2618 -3462 1560 171 25 4 chrX 17696536 17696816 -159277324 + MLT1C LTR MaLR 132 417 -50 201 232 89 18 chrX 17698263 17698319 -159275821 - L2 LINE L2 -7 3265 3206 543 239 51 0 chrX 17699508 17699646 -159274494 - MER5A DNA MER1_type 0 189 45 1662 181 46 38 chrX 17699652 17699838 -159274302 - MLT1B LTR MaLR -16 374 191 351 0 0 0 chrX 17699838 17699877 -159274263 + (GA)n Simple_repeat Simple_repeat 2 40 0 1662 181 46 38 chrX 17699877 17700061 -159274079 - MLT1B LTR MaLR -199 191 1 221 224 0 20 chrX 17700061 17700110 -159274030 - MER5A DNA MER1_type -138 51 4 301 344 53 36 chrX 17701668 17701970 -159272170 - L1M4 LINE L1 -2507 3639 3333 1485 189 108 44 chrX 17701990 17702333 -159271807 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 17702608 17702630 -159271510 + AT_rich Low_complexity Low_complexity 1 22 0 2334 97 0 7 chrX 17702836 17703144 -159270996 - AluSx SINE Alu -6 306 1 5508 86 56 4 chrX 17703162 17703990 -159270150 - L1MA2 LINE L1 -1 6303 5433 464 226 110 14 chrX 17704018 17704164 -159269976 - L1MC/D LINE L1 -2089 5719 5560 1037 127 16 19 chrX 17704168 17704381 -159269759 - L1MC/D LINE L1 -854 5292 5101 2041 138 0 19 chrX 17704393 17704704 -159269436 - AluSx SINE Alu -7 305 1 1731 178 11 0 chrX 17704864 17705145 -159268995 - AluJo SINE Alu -24 288 5 1206 264 57 10 chrX 17705162 17705545 -159268595 - L1MC/D LINE L1 -2089 5719 5319 355 311 96 47 chrX 17705553 17705916 -159268224 - L1MC/D LINE L1 -857 5289 4909 367 176 40 0 chrX 17706679 17706753 -159267387 - MLT1H LTR MaLR 0 505 429 295 317 28 14 chrX 17706874 17707019 -159267121 - HAL1 LINE L1 -1249 1258 1112 226 268 10 10 chrX 17707536 17707633 -159266507 + GA-rich Low_complexity Low_complexity 4 100 0 1895 143 23 17 chrX 17707728 17707924 -159266216 - L1MA9 LINE L1 -1 6311 6111 1640 169 83 18 chrX 17707924 17708250 -159265890 + MER7A DNA MER2_type 1 345 -1 1895 143 23 17 chrX 17708250 17708402 -159265738 - L1MA9 LINE L1 -201 6111 5961 1907 161 18 0 chrX 17708419 17708749 -159265391 - L1PB4 LINE L1 -14 6142 5807 738 184 0 0 chrX 17708755 17708896 -159265244 + L1 LINE L1 4852 4992 -1154 * 3847 169 27 3 chrX 17708892 17709612 -159264528 - L1MA9 LINE L1 -338 5974 5238 292 87 0 0 chrX 17710020 17710066 -159264074 - L1MA3 LINE L1 0 6305 6260 394 267 30 107 chrX 17711242 17711618 -159262522 - MLT1H LTR MaLR -32 377 28 572 311 36 15 chrX 17713373 17713569 -159260571 + MIR SINE MIR 51 250 -12 1246 171 49 4 chrX 17713877 17714141 -159259999 - MER33 DNA MER1_type -48 276 1 255 61 0 0 chrX 17714148 17714181 -159259959 + (AGATG)n Simple_repeat Simple_repeat 3 35 0 300 339 82 6 chrX 17715053 17715236 -159258904 - L3b LINE CR1 -242 1341 1145 2018 110 22 0 chrX 17715541 17715813 -159258327 + AluSx SINE Alu 1 278 -34 207 0 0 0 chrX 17715813 17715836 -159258304 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 496 241 146 50 chrX 17715844 17716105 -159258035 + L2 LINE L2 1876 2161 -1153 1131 182 19 0 chrX 17716585 17716799 -159257341 + MER20 DNA MER1_type 2 219 0 239 299 75 37 chrX 17717029 17717136 -159257004 + MIR SINE MIR 26 136 -72 241 293 13 27 chrX 17717196 17717271 -159256869 + 7SK RNA RNA 1 74 -119 2221 114 0 16 chrX 17718752 17719067 -159255073 + AluSg SINE Alu 1 310 0 398 313 88 9 chrX 17719412 17719749 -159254391 + L1ME4a LINE L1 5523 5905 -216 23 0 0 0 chrX 17720027 17720050 -159254090 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrX 17721980 17722009 -159252131 + AT_rich Low_complexity Low_complexity 1 29 0 2245 181 55 4 chrX 17722017 17722728 -159251412 + L1MB2 LINE L1 4887 5639 -544 43308 44 4 1 chrX 17722742 17728873 -159245267 - L1PA4 LINE L1 0 6155 1 2600 161 33 4 chrX 17728871 17729330 -159244810 + L1MB2 LINE L1 5623 6094 -77 * 407 200 0 0 chrX 17729333 17729403 -159244737 + FAM SINE Alu 89 158 -27 3263 125 101 12 chrX 17729428 17730002 -159244138 - L1PB4 LINE L1 -2 6154 5530 4020 109 6 19 chrX 17730002 17730263 -159243877 - L1PA14 LINE L1 -2 6159 5896 1858 167 0 3 chrX 17730263 17730562 -159243578 - AluJb SINE Alu -14 298 1 4020 109 6 19 chrX 17730562 17730925 -159243215 - L1PA14 LINE L1 -265 5896 5542 6908 178 17 12 chrX 17730926 17732799 -159241341 - L1PA12 LINE L1 -3766 3818 1926 2406 160 60 8 chrX 17732823 17733532 -159240608 - L1P4 LINE L1 -624 5542 4806 394 331 71 39 chrX 17733528 17733836 -159240304 - L1M2 LINE L1 -6528 321 4 * 231 218 0 0 chrX 17733864 17733919 -159240221 + L1MB2 LINE L1 6116 6170 -1 472 340 115 32 chrX 17733975 17734375 -159239765 + L2 LINE L2 2881 3313 0 454 383 24 8 chrX 17735010 17735258 -159238882 + L3 LINE CR1 217 468 -1109 255 365 24 16 chrX 17735524 17735650 -159238490 + L3 LINE CR1 500 626 -951 462 148 289 0 chrX 17737594 17737727 -159236413 + MER5A DNA MER1_type 4 179 -10 331 143 18 0 chrX 17738465 17738521 -159235619 + THE1C LTR MaLR 319 375 0 329 242 50 43 chrX 17738907 17739068 -159235072 + MER103 DNA DNA 3 164 -2 207 69 0 0 chrX 17739791 17739820 -159234320 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 189 390 134 23 chrX 17740391 17740735 -159233405 - L2 LINE L2 -338 2976 2595 1218 205 4 0 chrX 17740735 17740984 -159233156 - L1ME1 LINE L1 -237 5929 5680 297 206 48 0 chrX 17740981 17741044 -159233096 + L1MD2 LINE L1 6059 6124 -235 * 29 0 0 0 chrX 17741046 17741075 -159233065 + AT_rich Low_complexity Low_complexity 1 29 0 1208 248 94 64 chrX 17741992 17742524 -159231616 + MLT1H LTR MaLR 1 548 -1 2536 172 36 12 chrX 17742553 17743046 -159231094 - MLT1D LTR MaLR 0 505 1 357 286 173 1 chrX 17743210 17743409 -159230731 - MIR SINE MIR 0 262 34 24 0 0 0 chrX 17743723 17743747 -159230393 + AT_rich Low_complexity Low_complexity 1 24 0 2822 150 17 9 chrX 17744225 17744686 -159229454 - MLT1C LTR MaLR 0 467 3 569 330 115 3 chrX 17745171 17745519 -159228621 - L3 LINE CR1 -1 1576 1190 222 357 71 0 chrX 17745552 17745678 -159228462 - L3 LINE CR1 -503 1074 940 867 125 7 0 chrX 17745931 17746075 -159228065 - L1MA4A LINE L1 -12 6291 6147 420 364 20 54 chrX 17746198 17746495 -159227645 + L1MEd LINE L1 103 389 -5730 237 33 0 0 chrX 17746539 17746569 -159227571 + (CAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chrX 17746614 17746636 -159227504 + AT_rich Low_complexity Low_complexity 1 22 0 333 262 159 24 chrX 17746649 17746901 -159227239 + L1MEd LINE L1 926 1211 -4908 373 191 247 12 chrX 17747070 17747232 -159226908 + L1MEd LINE L1 3010 3209 -2920 4885 158 43 14 chrX 17747366 17748336 -159225804 + L1MB2 LINE L1 5172 6171 0 394 312 26 64 chrX 17748342 17748576 -159225564 + L1MEd LINE L1 3325 3549 -2580 12321 31 0 1 chrX 17748607 17750106 -159224034 - L1P LINE L1 -2134 4012 2515 9906 30 2 0 chrX 17750106 17752051 -159222089 + L1PA3 LINE L1 4206 6152 -3 243 0 0 0 chrX 17752057 17752084 -159222056 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 242 279 112 6 chrX 17752087 17752248 -159221892 + L1MEd LINE L1 3572 3749 -2380 2540 159 52 11 chrX 17752251 17752439 -159221701 - Tigger1 DNA MER2_type -3 2415 2236 1680 184 0 24 chrX 17752439 17752767 -159221373 + AluJb SINE Alu 1 321 0 2540 159 52 11 chrX 17752767 17753053 -159221087 - Tigger1 DNA MER2_type -182 2236 1919 1570 136 0 4 chrX 17753053 17753288 -159220852 + AluSg/x SINE Alu 76 309 -1 6680 115 14 21 chrX 17753288 17753508 -159220632 - Tigger1 DNA MER2_type -1391 1027 807 2311 91 13 0 chrX 17753508 17753817 -159220323 - AluSp SINE Alu 0 313 1 6680 115 14 21 chrX 17753817 17754630 -159219510 - Tigger1 DNA MER2_type -1611 807 1 1278 181 30 77 chrX 17755037 17755478 -159218662 + LTR37A LTR ERV1 7 426 0 360 167 30 0 chrX 17756185 17756251 -159217889 - MER92C LTR ERV1 0 554 487 310 231 0 0 chrX 17756471 17756536 -159217604 - MER92B LTR ERV1 -571 65 1 260 260 0 39 chrX 17756993 17757070 -159217070 - MER31-int LTR ERV1 -381 4555 4482 390 237 10 0 chrX 17757137 17757234 -159216906 - MER31-int LTR ERV1 -467 4469 4372 257 150 0 0 chrX 17757273 17757313 -159216827 - MER31-int LTR ERV1 -567 4369 4330 502 209 16 39 chrX 17757371 17757500 -159216640 - LTR37A LTR ERV1 -300 126 1 1286 233 33 100 chrX 17757517 17758006 -159216134 - MER31-int LTR ERV1 -703 4233 3778 746 182 10 134 chrX 17758355 17758646 -159215494 - MER31-int LTR ERV1 -3643 1293 1039 354 179 0 0 chrX 17759048 17759115 -159215025 - MER92C LTR ERV1 -1 553 487 309 250 150 0 chrX 17759265 17759365 -159214775 - MER92B LTR ERV1 -521 115 1 11349 43 2 3 chrX 17760364 17762852 -159211288 + L1PA5 LINE L1 3666 6151 -3 37 62 0 0 chrX 17763113 17763178 -159210962 + AT_rich Low_complexity Low_complexity 1 65 0 2259 113 0 3 chrX 17763223 17763534 -159210606 + AluSq SINE Alu 1 310 -3 47 73 0 0 chrX 17763586 17763682 -159210458 + AT_rich Low_complexity Low_complexity 1 96 0 216 97 0 0 chrX 17764270 17764301 -159209839 + (TG)n Simple_repeat Simple_repeat 2 32 0 1272 165 132 51 chrX 17764761 17764976 -159209164 - LTR37A LTR ERV1 0 426 230 396 0 0 0 chrX 17764976 17765020 -159209120 + (TG)n Simple_repeat Simple_repeat 2 45 0 1272 165 132 51 chrX 17765020 17765198 -159208942 - LTR37A LTR ERV1 -196 230 1 303 250 65 28 chrX 17765392 17765500 -159208640 + L1ME3A LINE L1 5845 5956 -214 568 248 80 118 chrX 17765865 17765970 -159208170 - MER34 LTR ERV1 -3 539 432 2285 98 3 0 chrX 17765970 17766267 -159207873 - AluSq SINE Alu -15 298 1 568 248 80 118 chrX 17766267 17766425 -159207715 - MER34 LTR ERV1 -110 432 270 2122 136 128 10 chrX 17766425 17766808 -159207332 - MSTA LTR MaLR 0 428 1 568 248 80 118 chrX 17766808 17767103 -159207037 - MER34 LTR ERV1 -272 270 1 264 301 57 67 chrX 17767307 17767498 -159206642 - MER20 DNA MER1_type -6 213 23 2529 70 21 49 chrX 17767498 17767884 -159206256 - THE1C LTR MaLR 0 375 1 264 301 57 67 chrX 17767884 17767901 -159206239 - MER20 DNA MER1_type -196 23 7 2280 146 26 81 chrX 17767906 17768413 -159205727 + L1MB2 LINE L1 5693 6171 0 500 207 124 8 chrX 17769484 17769605 -159204535 - MER92B LTR ERV1 -4 632 498 907 58 22 0 chrX 17769610 17769748 -159204392 + (TTTC)n Simple_repeat Simple_repeat 2 142 0 666 205 8 16 chrX 17769785 17770034 -159204106 - L1MA9 LINE L1 -22 6290 5948 932 159 67 0 chrX 17770037 17770269 -159203871 + L1MA9 LINE L1 5686 5952 -226 1628 221 9 52 chrX 17770269 17770690 -159203450 - MER92B LTR ERV1 -142 494 92 1998 121 73 16 chrX 17770692 17771007 -159203133 + MER1B DNA MER1_type 1 333 -6 2271 79 41 0 chrX 17771007 17771298 -159202842 + AluSg SINE Alu 1 303 -7 427 136 48 87 chrX 17771311 17771414 -159202726 - MER92B LTR ERV1 -537 99 1 270 318 135 41 chrX 17771415 17771585 -159202555 + MIR SINE MIR 7 192 -70 22 80 0 0 chrX 17772103 17772153 -159201987 + AT_rich Low_complexity Low_complexity 1 50 0 1685 312 219 20 chrX 17772671 17773670 -159200470 + L2 LINE L2 994 1793 -1520 335 246 67 73 chrX 17773670 17773849 -159200291 - MER5B DNA MER1_type 0 178 1 1685 312 219 20 chrX 17773849 17774551 -159199589 + L2 LINE L2 1793 3042 -271 584 343 53 4 chrX 17774550 17774795 -159199345 + MIR SINE MIR 6 262 0 * 35 24 0 0 chrX 17774894 17774936 -159199204 + AT_rich Low_complexity Low_complexity 1 42 0 599 234 8 0 chrX 17774973 17775097 -159199043 + L2 LINE L2 3186 3310 -3 2486 68 0 0 chrX 17775500 17775811 -159198329 + AluY SINE Alu 1 311 0 25 0 0 0 chrX 17775915 17775940 -159198200 + AT_rich Low_complexity Low_complexity 1 25 0 2331 71 0 43 chrX 17776891 17777216 -159196924 + AluY SINE Alu 1 311 0 26 52 0 17 chrX 17777247 17777261 -159196879 + AT_rich Low_complexity Low_complexity 1 14 -43 2078 69 3 100 chrX 17777261 17777581 -159196559 + AluSq SINE Alu 1 289 -24 26 52 0 17 chrX 17777581 17777624 -159196516 + AT_rich Low_complexity Low_complexity 14 57 0 1965 162 31 11 chrX 17778044 17778396 -159195744 - MLT1A1 LTR MaLR -6 359 1 2488 63 7 0 chrX 17779004 17779306 -159194834 - AluSp SINE Alu -9 304 1 1957 212 24 21 chrX 17779580 17780046 -159194094 + MLT1C LTR MaLR 1 467 0 1883 178 14 17 chrX 17780303 17780652 -159193488 + MER7A DNA MER2_type 1 346 0 334 313 140 44 chrX 17781168 17781669 -159192471 + L1 LINE L1 3176 3724 -2422 2263 143 34 31 chrX 17781801 17782219 -159191921 - MSTB1 LTR MaLR -13 419 1 253 251 110 21 chrX 17782257 17782448 -159191692 - L1M4 LINE L1 -1441 4705 4498 235 300 57 51 chrX 17782751 17783101 -159191039 - L1M4 LINE L1 -2106 4040 3689 515 289 83 40 chrX 17783297 17783997 -159190143 - L1M4 LINE L1 -2751 3395 2666 3859 140 10 2 chrX 17784002 17784616 -159189524 + L1PB4 LINE L1 5436 6054 -102 8940 101 19 3 chrX 17784625 17785858 -159188282 + HSMAR1 DNA Mariner 4 1255 -32 365 119 0 45 chrX 17785860 17785927 -159188213 + L1PA16 LINE L1 6087 6150 -16 520 298 148 45 chrX 17786003 17786422 -159187718 - L1M4 LINE L1 -3572 2574 2113 1563 201 115 21 chrX 17786714 17787192 -159186948 + Charlie1b DNA MER1_type 1 523 0 1125 77 26 0 chrX 17787764 17787919 -159186221 - L1MA3 LINE L1 -1 6304 6146 21 0 0 0 chrX 17788523 17788544 -159185596 + AT_rich Low_complexity Low_complexity 1 21 0 231 310 20 42 chrX 17788894 17789011 -159185129 + MIR SINE MIR 22 141 -67 31 58 0 0 chrX 17789352 17789404 -159184736 + AT_rich Low_complexity Low_complexity 1 52 0 421 171 0 0 chrX 17789553 17789623 -159184517 + AluJb SINE Alu 1 70 -242 1469 143 0 9 chrX 17789661 17789892 -159184248 + AluJb SINE Alu 73 301 -11 420 254 15 62 chrX 17790144 17790274 -159183866 - L2 LINE L2 0 3313 3190 5290 112 45 2 chrX 17790983 17791786 -159182354 - L1PA14 LINE L1 0 6161 5325 2244 72 7 0 chrX 17791794 17792072 -159182068 - AluSp SINE Alu -16 297 18 1874 73 44 0 chrX 17792072 17792347 -159181793 + L1MA5 LINE L1 6012 6298 -2 2630 175 13 0 chrX 17792380 17792854 -159181286 + L1MA8 LINE L1 5591 6070 -221 2155 106 7 3 chrX 17792891 17793184 -159180956 + AluSq SINE Alu 1 294 -19 380 324 35 12 chrX 17793403 17793576 -159180564 + MER69A DNA AcHobo 1 177 0 800 259 10 0 chrX 17794526 17794719 -159179421 - L2 LINE L2 -983 2331 2137 23 0 0 0 chrX 17795448 17795471 -159178669 + AT_rich Low_complexity Low_complexity 1 23 0 301 155 0 0 chrX 17796418 17796476 -159177664 + L1MA4A LINE L1 6235 6292 -11 1808 111 49 85 chrX 17796662 17797051 -159177089 - THE1C LTR MaLR 0 375 1 424 366 45 24 chrX 17797906 17798152 -159175988 - MIR SINE MIR -9 253 3 450 88 0 0 chrX 17798811 17798879 -159175261 + (TG)n Simple_repeat Simple_repeat 2 69 0 326 314 93 0 chrX 17799211 17799351 -159174789 + MIR SINE MIR 104 256 -6 2245 173 0 14 chrX 17800975 17801132 -159173008 - MER89 LTR ERV1 0 559 401 2783 101 28 14 chrX 17801132 17801558 -159172582 + MSTB1 LTR MaLR 1 432 0 2245 173 0 14 chrX 17801558 17801864 -159172276 - MER89 LTR ERV1 -158 401 4 24 0 0 0 chrX 17802125 17802149 -159171991 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chrX 17802229 17802268 -159171872 + AT_rich Low_complexity Low_complexity 1 39 0 320 301 124 18 chrX 17802401 17802514 -159171626 - MIR SINE MIR -63 145 21 3393 238 38 56 chrX 17802887 17804137 -159170003 + L1MC4 LINE L1 6815 8042 0 193 25 0 100 chrX 17804767 17804807 -159169333 + (TATG)n Simple_repeat Simple_repeat 3 38 0 327 49 0 0 chrX 17804989 17805030 -159169110 + (CA)n Simple_repeat Simple_repeat 1 41 0 888 174 12 12 chrX 17805153 17805314 -159168826 - MER58B DNA MER1_type 0 341 181 2363 89 0 3 chrX 17806236 17806538 -159167602 + AluSq SINE Alu 1 301 -12 1606 62 0 5 chrX 17806874 17807068 -159167072 + AluY SINE Alu 1 193 -118 6219 101 7 6 chrX 17807687 17808934 -159165206 + L1PA15 LINE L1 4905 6163 -2 264 289 106 10 chrX 17809189 17809293 -159164847 - MIR SINE MIR -50 212 99 761 191 105 34 chrX 17809495 17809704 -159164436 + MER58A DNA MER1_type 1 224 0 252 149 68 0 chrX 17810825 17810899 -159163241 + (TA)n Simple_repeat Simple_repeat 2 80 0 224 261 91 11 chrX 17811272 17811360 -159162780 - MIR3 SINE MIR -9 199 105 693 260 97 50 chrX 17811989 17812328 -159161812 + LTR16C LTR ERVL 114 468 -23 1542 169 0 22 chrX 17812328 17812606 -159161534 - L1M3 LINE L1 -567 5616 5345 1753 153 3 3 chrX 17812608 17812890 -159161250 + Ricksha DNA DNA 7 288 -1758 * 8143 132 35 11 chrX 17812888 17814283 -159159857 + Ricksha DNA DNA 1821 3209 -39 303 304 13 0 chrX 17814283 17814362 -159159778 - MER82 DNA MER2_type -526 127 48 601 210 7 110 chrX 17814425 17814573 -159159567 - L1M3 LINE L1 -787 5359 5254 270 0 0 0 chrX 17814573 17814603 -159159537 + (CA)n Simple_repeat Simple_repeat 2 31 0 601 210 7 110 chrX 17814603 17814744 -159159396 - L1M3 LINE L1 -892 5254 5100 1587 31 5 0 chrX 17814765 17814959 -159159181 + L1PA4 LINE L1 5958 6152 -3 3054 198 13 63 chrX 17815074 17815751 -159158389 + MER82 DNA MER2_type 1 643 -10 292 252 14 35 chrX 17815773 17815916 -159158224 + (CATATA)n Simple_repeat Simple_repeat 5 144 0 576 311 56 20 chrX 17815919 17816276 -159157864 + L1MC/D LINE L1 5451 5820 -1988 26604 124 38 12 chrX 17816280 17820444 -159153696 + L1P3 LINE L1 763 5131 -1350 7216 36 6 0 chrX 17820444 17821676 -159152464 - L1PA5 LINE L1 0 6154 4906 26604 124 38 12 chrX 17821676 17822481 -159151659 + L1P3 LINE L1 5131 5914 -567 1016 199 76 0 chrX 17822485 17822776 -159151364 + L1MB8 LINE L1 3029 3341 -2805 614 98 20 0 chrX 17822778 17822880 -159151260 + L1PB2 LINE L1 6046 6149 -2 2299 219 23 9 chrX 17822888 17823460 -159150680 + L1MB8 LINE L1 5593 6172 -6 3278 155 19 70 chrX 17824551 17825279 -159148861 + LTR8 LTR ERV1 1 691 0 183 234 0 43 chrX 17825443 17825490 -159148650 - L2 LINE L2 0 3313 3269 491 360 54 19 chrX 17825494 17825752 -159148388 - L2 LINE L2 -196 3117 2851 1388 205 79 55 chrX 17825828 17826247 -159147893 + MER92B LTR ERV1 15 443 -193 226 232 50 50 chrX 17826249 17826348 -159147792 + LTR48B LTR ERV1 4 102 -542 * 1138 223 61 72 chrX 17826319 17826727 -159147413 + MER39 LTR ERV1 175 706 -1 705 260 15 35 chrX 17826727 17826908 -159147232 + MER92B LTR ERV1 453 629 -7 289 83 0 0 chrX 17826893 17826929 -159147211 - U2 snRNA snRNA -152 36 1 * 404 338 21 0 chrX 17826959 17827101 -159147039 - L2 LINE L2 -331 2982 2838 4929 105 46 15 chrX 17827193 17827948 -159146192 + MER4E LTR ERV1 1 779 0 1923 171 118 0 chrX 17827948 17828329 -159145811 + MSTC LTR MaLR 3 428 0 284 119 153 0 chrX 17828683 17828742 -159145398 - MER92C LTR ERV1 0 554 487 506 213 37 29 chrX 17828827 17828963 -159145177 - MER92B LTR ERV1 -499 137 1 3342 174 34 17 chrX 17829275 17829925 -159144215 + MER67B LTR ERV1 1 661 0 3011 171 71 3 chrX 17830482 17831071 -159143069 - LTR48B LTR ERV1 -2 642 14 576 96 0 67 chrX 17831077 17831141 -159142999 + MER4A LTR ERV1 1 57 -607 5259 99 31 11 chrX 17831141 17831905 -159142235 - LTR17 LTR ERV1 0 780 1 576 96 0 67 chrX 17831905 17831944 -159142196 + MER4A LTR ERV1 57 97 -567 * 1917 111 159 79 chrX 17831941 17832319 -159141821 + MER4A LTR ERV1 257 664 0 4702 160 76 74 chrX 17832431 17832934 -159141206 - LTR17-int LTR ERV1 -164 6167 5667 2271 86 0 38 chrX 17832934 17833248 -159140892 + AluSg SINE Alu 2 303 -7 4702 160 76 74 chrX 17833248 17833897 -159140243 - LTR17-int LTR ERV1 -664 5667 5012 472 243 26 47 chrX 17833904 17834122 -159140018 - LTR48B-int LTR ERV1 -2709 3622 1981 8067 149 22 16 chrX 17834189 17836642 -159137498 - L1MA4A LINE L1 -5 7002 4565 9388 188 112 10 chrX 17836721 17836927 -159137213 - L1MA4A LINE L1 -4724 2125 1941 2254 106 0 0 chrX 17836927 17837228 -159136912 - AluSx SINE Alu -11 301 1 9388 188 112 10 chrX 17837228 17838948 -159135192 - L1MA4A LINE L1 -4908 1941 2 584 211 43 29 chrX 17839007 17839215 -159134925 - LTR48B-int LTR ERV1 -3170 1953 1743 525 196 0 0 chrX 17839427 17839524 -159134616 - LTR48B-int LTR ERV1 -2878 3453 3357 1620 137 57 25 chrX 17839717 17840071 -159134069 - LTR48B-int LTR ERV1 -156 1630 1347 1234 244 40 20 chrX 17840063 17840366 -159133774 - LTR48B-int LTR ERV1 -4231 2100 1792 * 518 199 19 106 chrX 17840364 17840582 -159133558 - LTR48B-int LTR ERV1 -4554 1728 288 * 374 206 0 22 chrX 17841079 17841171 -159132969 - LTR48B-int LTR ERV1 -4954 1377 1288 249 211 173 0 chrX 17841244 17841296 -159132844 - tRNA-Glu-GAG tRNA tRNA 0 75 15 1164 160 4 59 chrX 17841650 17841888 -159132252 - LTR48B-int LTR ERV1 -6081 250 26 4285 138 40 14 chrX 17841888 17842592 -159131548 + MER50 LTR ERV1 1 722 -12 3499 153 42 2 chrX 17842660 17843279 -159130861 - LTR48B LTR ERV1 0 644 1 3834 130 5 44 chrX 17843382 17844043 -159130097 - MER41B LTR ERV1 0 635 1 691 251 163 20 chrX 17844057 17844412 -159129728 + HAL1b LINE L1 19 424 -924 1005 226 99 14 chrX 17844645 17844999 -159129141 + HAL1b LINE L1 719 1102 -246 22 35 0 0 chrX 17845675 17845704 -159128436 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chrX 17846086 17846121 -159128019 + AT_rich Low_complexity Low_complexity 1 35 0 192 263 175 0 chrX 17846319 17846376 -159127764 - MIR SINE MIR -118 144 78 2161 85 0 14 chrX 17846459 17846742 -159127398 + AluSq SINE Alu 1 279 -34 315 0 0 0 chrX 17846742 17846777 -159127363 + (CA)n Simple_repeat Simple_repeat 2 36 0 30 77 0 0 chrX 17846824 17846889 -159127251 + AT_rich Low_complexity Low_complexity 1 65 0 296 257 87 87 chrX 17847013 17847219 -159126921 + MLT1H LTR MaLR 97 302 -247 1553 138 42 69 chrX 17847337 17847551 -159126589 + L1MA8 LINE L1 5957 6160 -131 2049 113 20 23 chrX 17847551 17847853 -159126287 + AluSq SINE Alu 1 301 -12 1553 138 42 69 chrX 17847853 17847972 -159126168 + L1MA8 LINE L1 6160 6281 -10 2354 115 46 48 chrX 17847976 17848111 -159126029 + MER75 DNA T2_type 1 135 -379 1673 113 46 0 chrX 17848111 17848383 -159125757 - AluSx SINE Alu 0 318 36 2354 115 46 48 chrX 17848383 17848638 -159125502 + MER75 DNA T2_type 135 391 -123 2122 137 22 0 chrX 17848638 17848951 -159125189 + MER1B DNA MER1_type 20 339 0 446 228 248 21 chrX 17849234 17849379 -159124761 + MER5A DNA MER1_type 9 186 -3 996 233 9 9 chrX 17849392 17849615 -159124525 + MER58A DNA MER1_type 2 224 0 302 212 59 12 chrX 17849687 17849772 -159124368 + MIR SINE MIR 75 163 -99 378 0 0 0 chrX 17849773 17849815 -159124325 + (TG)n Simple_repeat Simple_repeat 2 43 0 1468 151 105 12 chrX 17850690 17850948 -159123192 - AluJo SINE Alu -30 282 1 1097 190 5 5 chrX 17851085 17851269 -159122871 - MER5A DNA MER1_type -5 184 1 427 268 146 0 chrX 17852794 17852958 -159121182 + MIR SINE MIR 45 232 -30 2216 108 18 54 chrX 17852965 17853354 -159120786 - THE1C LTR MaLR 0 375 1 426 85 0 0 chrX 17853373 17853432 -159120708 + (ATGGTG)n Simple_repeat Simple_repeat 4 62 0 292 304 62 18 chrX 17854470 17854582 -159119558 + L2 LINE L2 3186 3302 -11 517 152 33 0 chrX 17854709 17854801 -159119339 - L1MC4 LINE L1 -3 8039 7945 240 162 0 0 chrX 17854827 17854864 -159119276 - THE1A LTR MaLR -3 352 316 1100 83 0 0 chrX 17854883 17855027 -159119113 - THE1A LTR MaLR -206 149 6 1375 201 98 24 chrX 17855032 17855451 -159118689 - L1MC4 LINE L1 -140 7902 7453 1504 215 29 23 chrX 17855453 17855802 -159118338 + MLT1A1 LTR MaLR 15 365 0 326 241 0 65 chrX 17855810 17855889 -159118251 - L1MC4 LINE L1 -605 7437 7365 2166 179 29 69 chrX 17855889 17855958 -159118182 - MLT1D LTR MaLR 0 505 435 1726 114 20 108 chrX 17855958 17856299 -159117841 + AluYb8 SINE Alu 1 311 -7 2166 179 29 69 chrX 17856299 17856753 -159117387 - MLT1D LTR MaLR -70 435 3 326 241 0 65 chrX 17856753 17856781 -159117359 - L1MC4 LINE L1 -677 7365 7337 2415 61 7 7 chrX 17856816 17857110 -159117030 + AluSq SINE Alu 1 294 -19 206 341 57 8 chrX 17857778 17857901 -159116239 - MIR3 SINE MIR -6 202 74 573 274 48 6 chrX 17858551 17858719 -159115421 + MIR SINE MIR 40 214 -48 1608 195 19 30 chrX 17858989 17859358 -159114782 + MLT1A1 LTR MaLR 1 365 0 326 320 117 22 chrX 17859896 17860127 -159114013 - MIR SINE MIR -9 253 1 410 233 25 114 chrX 17860519 17860608 -159113532 - HAL1 LINE L1 0 2507 2412 1995 105 30 0 chrX 17860608 17860875 -159113265 - AluSx SINE Alu -37 275 1 410 233 25 114 chrX 17860875 17861030 -159113110 - HAL1 LINE L1 -95 2412 2285 508 300 31 0 chrX 17861076 17861206 -159112934 - L2 LINE L2 0 3313 3180 441 307 127 44 chrX 17861319 17861775 -159112365 - HAL1 LINE L1 -395 2112 1619 22 35 0 0 chrX 17861848 17861877 -159112263 + AT_rich Low_complexity Low_complexity 1 29 0 1015 240 14 0 chrX 17862082 17862290 -159111850 - MER58A DNA MER1_type -1 223 13 372 304 40 76 chrX 17862609 17862912 -159111228 - HAL1 LINE L1 -2214 293 2 37 39 0 0 chrX 17863308 17863359 -159110781 + AT_rich Low_complexity Low_complexity 1 51 0 2470 60 0 0 chrX 17863384 17863683 -159110457 + AluY SINE Alu 1 299 -12 24 32 0 0 chrX 17863700 17863731 -159110409 + AT_rich Low_complexity Low_complexity 1 31 0 2859 100 200 45 chrX 17864163 17864712 -159109428 + MER51A LTR ERV1 1 634 0 274 284 0 15 chrX 17864862 17864929 -159109211 + L2 LINE L2 3238 3303 -10 2317 71 0 0 chrX 17865068 17865402 -159108738 - AluSg SINE Alu 0 334 1 2319 98 3 16 chrX 17866962 17867279 -159106861 - AluSp SINE Alu 0 313 1 1918 134 0 29 chrX 17867544 17867858 -159106282 - AluSx SINE Alu -7 305 1 226 140 140 0 chrX 17868947 17868997 -159105143 + L1ME1 LINE L1 3644 3700 -2446 1680 153 25 53 chrX 17868997 17869317 -159104823 + AluJb SINE Alu 1 311 -1 1801 247 26 31 chrX 17869326 17869909 -159104231 + L1ME1 LINE L1 3673 4252 -1894 1717 162 19 44 chrX 17869912 17870227 -159103913 - AluJo SINE Alu -3 309 3 234 0 0 0 chrX 17870330 17870356 -159103784 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 307 223 0 43 chrX 17870362 17870456 -159103684 - L1M LINE L1 -941 5403 5314 * 672 130 106 0 chrX 17870446 17870569 -159103571 - L1MC3 LINE L1 -1 7784 7649 1706 219 27 58 chrX 17870581 17871039 -159103101 + L1ME1 LINE L1 5637 6108 -58 1625 144 24 48 chrX 17871039 17871414 -159102726 + L1MA7 LINE L1 5925 6290 -1 1706 219 27 58 chrX 17871414 17871439 -159102701 + L1ME1 LINE L1 6108 6132 -34 2351 74 0 0 chrX 17871439 17871735 -159102405 - AluSg1 SINE Alu -13 296 1 1706 219 27 58 chrX 17871735 17871797 -159102343 + L1ME1 LINE L1 6132 6166 0 208 380 36 22 chrX 17871854 17871991 -159102149 - L2 LINE L2 -181 3091 2953 258 217 0 0 chrX 17872203 17872249 -159101891 - MLT1K LTR MaLR -5 583 538 35 0 0 0 chrX 17872273 17872308 -159101832 + AT_rich Low_complexity Low_complexity 1 35 0 486 304 134 0 chrX 17872584 17872778 -159101362 - MLT1K LTR MaLR -235 353 134 2035 104 7 20 chrX 17872829 17873127 -159101013 - AluSx SINE Alu -18 294 1 21 95 0 0 chrX 17873201 17873264 -159100876 + AT_rich Low_complexity Low_complexity 1 63 0 256 361 113 45 chrX 17873849 17874427 -159099713 + L2 LINE L2 2082 2700 -609 3112 51 44 0 chrX 17874427 17874836 -159099304 + L1PA8 LINE L1 5743 6169 -3 831 256 148 33 chrX 17875305 17875773 -159098367 - MLT1G1 LTR MaLR 0 595 14 890 251 94 15 chrX 17876279 17876737 -159097403 + L1ME3A LINE L1 2115 2573 -3642 531 263 31 66 chrX 17876842 17877070 -159097070 + LTR16A LTR ERVL 115 334 -116 512 155 78 0 chrX 17877096 17877199 -159096941 - L1MA9 LINE L1 -22 6290 6180 1372 143 23 26 chrX 17877202 17877467 -159096673 - L1MA9 LINE L1 -232 6080 5817 577 299 30 23 chrX 17877558 17877859 -159096281 + L1ME3A LINE L1 2686 2988 -3227 * 2175 248 52 55 chrX 17877836 17878630 -159095510 + L1ME3A LINE L1 5381 6171 -68 627 248 57 34 chrX 17879040 17879103 -159095037 - LTR50 LTR ERVL 0 795 735 2088 104 25 0 chrX 17879103 17879383 -159094757 + AluSq SINE Alu 1 287 -26 627 248 57 34 chrX 17879383 17879581 -159094559 - LTR50 LTR ERVL -60 735 528 519 216 50 106 chrX 17879602 17879801 -159094339 - LTR50 LTR ERVL -607 188 1 1375 254 22 6 chrX 17880858 17881173 -159092967 + LTR40b LTR ERVL 1 320 -142 1292 196 7 29 chrX 17881182 17881458 -159092682 - MLT1D LTR MaLR -2 503 234 518 277 0 0 chrX 17881526 17881638 -159092502 - MLT1D LTR MaLR -411 215 104 * 526 144 124 0 chrX 17881628 17881725 -159092415 + LTR40a LTR ERVL 409 517 -2 300 301 66 49 chrX 17881987 17882170 -159091970 - MER5A DNA MER1_type 0 189 4 1905 136 0 37 chrX 17882283 17882607 -159091533 + AluJo SINE Alu 1 312 0 490 204 76 15 chrX 17883724 17883856 -159090284 + MER91C DNA MER1_type 1 140 0 369 318 27 9 chrX 17884589 17884699 -159089441 + L2 LINE L2 3202 3313 0 279 54 0 0 chrX 17886678 17886715 -159087425 + (TGGA)n Simple_repeat Simple_repeat 3 39 0 180 352 0 0 chrX 17886867 17886921 -159087219 + MIR3 SINE MIR 108 161 -47 205 218 36 0 chrX 17887235 17887290 -159086850 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 * 214 200 0 0 chrX 17887254 17887294 -159086846 + (TA)n Simple_repeat Simple_repeat 1 40 0 183 80 0 0 chrX 17887294 17887319 -159086821 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 200 0 0 chrX 17887326 17887376 -159086764 - L1MC4 LINE L1 -1340 6702 6653 684 239 54 93 chrX 17887820 17888105 -159086035 + MLT1D LTR MaLR 6 276 -258 416 302 17 6 chrX 17888158 17888330 -159085810 - L1ME3A LINE L1 -230 5940 5767 384 77 0 0 chrX 17888378 17888430 -159085710 + (TG)n Simple_repeat Simple_repeat 2 53 0 254 247 52 0 chrX 17888443 17888540 -159085600 - L1M4c LINE L1 -5021 1363 1262 936 217 107 8 chrX 17888584 17888828 -159085312 - MLT1A1 LTR MaLR -97 268 1 9830 183 56 81 chrX 17888829 17890626 -159083514 - L1MCa LINE L1 -2521 3905 2065 2705 70 6 0 chrX 17890626 17890978 -159083162 + L1PA7 LINE L1 5794 6154 0 9830 183 56 81 chrX 17890978 17891005 -159083135 - L1MCa LINE L1 -4361 2065 2039 2180 104 3 3 chrX 17891005 17891314 -159082826 + AluSx SINE Alu 1 309 -3 9830 183 56 81 chrX 17891314 17891487 -159082653 - L1MCa LINE L1 -4387 2039 1863 1133 175 63 5 chrX 17891487 17891710 -159082430 - MER46A DNA MER2_type 0 236 1 9830 183 56 81 chrX 17891710 17892940 -159081200 - L1MCa LINE L1 -4563 1863 798 366 61 0 0 chrX 17892940 17892989 -159081151 + (TG)n Simple_repeat Simple_repeat 2 50 0 9830 183 56 81 chrX 17892989 17893745 -159080395 - L1MCa LINE L1 -5628 798 25 208 338 14 0 chrX 17895899 17895970 -159078170 + MIR SINE MIR 117 188 -74 24 0 0 0 chrX 17896974 17896998 -159077142 + AT_rich Low_complexity Low_complexity 1 24 0 933 321 105 34 chrX 17897419 17898073 -159076067 + L2 LINE L2 2590 3313 0 825 276 142 20 chrX 17899510 17900100 -159074040 + L1ME3A LINE L1 5289 5951 -216 26 0 0 0 chrX 17900325 17900351 -159073789 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chrX 17900431 17900480 -159073660 + AT_rich Low_complexity Low_complexity 1 49 0 241 311 163 15 chrX 17900529 17900664 -159073476 - MIR3 SINE MIR -13 195 41 24 32 0 0 chrX 17902348 17902379 -159071761 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 17902606 17902627 -159071513 + AT_rich Low_complexity Low_complexity 1 21 0 194 305 51 34 chrX 17903234 17903352 -159070788 - L2 LINE L2 -3 3310 3191 212 260 0 20 chrX 17904561 17904611 -159069529 - L2 LINE L2 -61 3211 3163 1570 206 65 5 chrX 17904748 17905117 -159069023 - L1MB7 LINE L1 -9 6175 5785 21 57 0 0 chrX 17905187 17905222 -159068918 + AT_rich Low_complexity Low_complexity 1 35 0 248 330 19 9 chrX 17905347 17905453 -159068687 - MIR SINE MIR -5 257 151 464 270 48 0 chrX 17905454 17905580 -159068560 + MIR SINE MIR 30 161 -101 195 303 172 10 chrX 17905639 17905738 -159068402 - MIR SINE MIR -84 178 64 469 187 22 0 chrX 17906463 17906554 -159067586 - L1MC2 LINE L1 -9 6335 6243 2110 89 3 3 chrX 17906814 17907125 -159067015 + AluSp SINE Alu 1 311 0 6537 110 43 6 chrX 17907359 17908579 -159065561 + L1MA2 LINE L1 5039 6304 0 23 54 0 0 chrX 17908834 17908871 -159065269 + AT_rich Low_complexity Low_complexity 1 37 0 306 223 109 80 chrX 17909014 17909189 -159064951 + L1ME3A LINE L1 2396 2575 -3965 1687 313 86 38 chrX 17909228 17911755 -159062385 + L1ME3A LINE L1 2661 5352 -1188 490 325 49 42 chrX 17912065 17912638 -159061502 + L1ME3A LINE L1 5687 6263 -301 1969 207 52 12 chrX 17912861 17913359 -159060781 - L1 LINE L1 -1599 4547 4030 * 3856 184 23 29 chrX 17913352 17913965 -159060175 + L1MB1 LINE L1 5603 6218 -344 2252 71 41 0 chrX 17913965 17914259 -159059881 - AluYa5 SINE Alu -5 306 1 3856 184 23 29 chrX 17914259 17914484 -159059656 + L1MB1 LINE L1 6218 6438 -124 2171 131 0 0 chrX 17914484 17914796 -159059344 - AluSx SINE Alu 0 312 1 3856 184 23 29 chrX 17914796 17914829 -159059311 + L1MB1 LINE L1 6438 6470 -92 1368 83 14 42 chrX 17914825 17915062 -159059078 + L1PA10 LINE L1 5938 6168 0 * 1148 161 13 101 chrX 17915066 17915364 -159058776 + L1MA10 LINE L1 6060 6331 -3 15382 116 26 12 chrX 17915425 17917810 -159056330 + Tigger1 DNA MER2_type 1 2418 0 589 292 94 29 chrX 17918345 17918622 -159055518 + LTR33A LTR ERVL 1 295 -228 1010 165 34 11 chrX 17918882 17919058 -159055082 - L1M3e LINE L1 -6844 186 7 248 325 65 16 chrX 17919203 17919326 -159054814 - MIR SINE MIR -24 238 110 3272 209 41 19 chrX 17919766 17920597 -159053543 + L1MB7 LINE L1 4142 4990 -1156 581 282 104 32 chrX 17920905 17921214 -159052926 + MLT1H LTR MaLR 219 549 0 3863 184 31 11 chrX 17921218 17922312 -159051828 + L1MB7 LINE L1 4930 6046 -138 776 294 84 3 chrX 17923111 17923410 -159050730 - MER20B DNA MER1_type -405 378 56 477 160 52 3 chrX 17923505 17923841 -159050299 + (TA)n Simple_repeat Simple_repeat 1 352 0 324 176 55 0 chrX 17923907 17924072 -159050068 + (TA)n Simple_repeat Simple_repeat 1 174 0 253 188 29 0 chrX 17924138 17924207 -159049933 + (TA)n Simple_repeat Simple_repeat 2 72 0 200 176 0 39 chrX 17924417 17924468 -159049672 + (TA)n Simple_repeat Simple_repeat 2 50 0 405 0 0 0 chrX 17924574 17924619 -159049521 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 26 30 0 0 chrX 17924628 17924661 -159049479 + AT_rich Low_complexity Low_complexity 1 33 0 230 214 154 17 chrX 17924930 17925047 -159049093 - L1ME4a LINE L1 -18 6103 5971 1565 189 145 22 chrX 17925188 17925224 -159048916 - MLT2D LTR ERVL -4 410 380 684 24 0 0 chrX 17925224 17925306 -159048834 + (TG)n Simple_repeat Simple_repeat 2 83 0 1565 189 145 22 chrX 17925306 17925634 -159048506 - MLT2D LTR ERVL -34 380 1 2007 157 21 0 chrX 17925887 17926264 -159047876 + L1 LINE L1 4462 4846 -1300 6050 130 24 3 chrX 17926270 17927376 -159046764 + L1PA16 LINE L1 5032 6166 0 27 0 0 0 chrX 17928078 17928105 -159046035 + AT_rich Low_complexity Low_complexity 1 27 0 2030 187 40 20 chrX 17928732 17929181 -159044959 - L1MC4 LINE L1 -143 7899 7442 460 343 91 0 chrX 17929690 17929888 -159044252 + MIR SINE MIR 18 233 -29 183 246 115 33 chrX 17929916 17929977 -159044163 + MIR SINE MIR 42 107 -155 246 32 0 0 chrX 17930246 17930277 -159043863 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 319 26 26 chrX 17930693 17930809 -159043331 - L3 LINE CR1 -107 1470 1355 23 78 0 0 chrX 17930948 17930999 -159043141 + AT_rich Low_complexity Low_complexity 1 51 0 186 309 10 62 chrX 17931102 17931199 -159042941 - MIR SINE MIR -76 186 95 2471 248 63 37 chrX 17932288 17932553 -159041587 - L1MEc LINE L1 -3913 2483 2226 1016 152 16 0 chrX 17932553 17932737 -159041403 - L1MA6 LINE L1 -18 6282 6096 2471 248 63 37 chrX 17932737 17933134 -159041006 - L1MEc LINE L1 -4170 2226 1786 1506 202 50 3 chrX 17933134 17933431 -159040709 - AluJb SINE Alu -1 311 1 2471 248 63 37 chrX 17933431 17933730 -159040410 - L1MEc LINE L1 -4610 1786 1496 349 148 16 0 chrX 17933731 17933744 -159040396 - MER46A DNA MER2_type -78 158 145 964 118 35 0 chrX 17933744 17933888 -159040252 + Tigger4(Zombi) DNA MER2_type 1 149 -2582 1357 146 28 32 chrX 17933891 17934144 -159039996 + Tigger4(Zombi) DNA MER2_type 2471 2722 -9 951 259 46 29 chrX 17934163 17934573 -159039567 - L1MEc LINE L1 -4923 1473 1057 1846 251 48 0 chrX 17934596 17935075 -159039065 - L1MEc LINE L1 -5410 986 485 1617 169 42 92 chrX 17935082 17935537 -159038603 - MSTB1 LTR MaLR 0 432 1 400 224 12 0 chrX 17935547 17935632 -159038508 - LTR40a LTR ERVL -4 515 430 850 261 59 33 chrX 17935637 17935882 -159038258 - LTR40b LTR ERVL -181 281 27 1906 146 46 46 chrX 17935882 17936272 -159037868 + MLT1B LTR MaLR 1 390 0 850 261 59 33 chrX 17936272 17936298 -159037842 - LTR40b LTR ERVL -435 27 3 1506 274 24 12 chrX 17936301 17936710 -159037430 - L1MEc LINE L1 -5918 478 65 526 161 8 17 chrX 17937942 17938060 -159036080 + GA-rich Low_complexity Low_complexity 4 120 0 477 247 163 18 chrX 17938090 17938256 -159035884 + MER58A DNA MER1_type 35 224 0 2206 108 0 0 chrX 17938331 17938626 -159035514 - AluSx SINE Alu -17 295 1 269 319 91 58 chrX 17939200 17939492 -159034648 + L2 LINE L2 2888 3266 -47 2149 197 13 50 chrX 17939492 17940016 -159034124 - MLT1D LTR MaLR 0 505 1 269 319 91 58 chrX 17940016 17940061 -159034079 + L2 LINE L2 3266 3308 -5 186 103 0 0 chrX 17940063 17940092 -159034048 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 186 43 0 0 chrX 17940168 17940191 -159033949 + (A)n Simple_repeat Simple_repeat 1 23 0 848 270 0 0 chrX 17940344 17940518 -159033622 - MER5A DNA MER1_type 0 189 16 335 350 76 32 chrX 17940562 17940719 -159033421 + MIR SINE MIR 20 183 -79 42228 32 22 1 chrX 17941224 17947222 -159026918 - L1PA2 LINE L1 -2 6153 26 965 243 40 97 chrX 17947698 17948172 -159025968 + LTR16A1 LTR ERVL 3 449 -8 240 368 9 9 chrX 17948630 17948744 -159025396 + L1ME3A LINE L1 5965 6078 -92 252 300 136 7 chrX 17948988 17949128 -159025012 - L1M4 LINE L1 -1981 4165 4008 721 307 38 71 chrX 17949291 17949896 -159024244 - L1MEd LINE L1 -5213 906 322 25 0 0 0 chrX 17950062 17950087 -159024053 + AT_rich Low_complexity Low_complexity 1 25 0 223 286 48 0 chrX 17950690 17950753 -159023387 + MIR SINE MIR 147 212 -50 352 273 50 50 chrX 17950854 17950993 -159023147 + L2 LINE L2 3173 3311 -2 205 343 0 0 chrX 17951174 17951247 -159022893 + MIR3 SINE MIR 125 197 -11 21 0 0 0 chrX 17952881 17952902 -159021238 + AT_rich Low_complexity Low_complexity 1 21 0 1029 131 0 36 chrX 17953864 17954032 -159020108 - AluSg/x SINE Alu -20 292 131 413 257 125 0 chrX 17954073 17954209 -159019931 + Charlie7 DNA MER1_type 5 157 -2455 2103 119 27 0 chrX 17954299 17954594 -159019546 - AluSx SINE Alu -9 303 1 523 371 38 4 chrX 17954599 17954836 -159019304 + LTR33 LTR ERVL 21 265 -256 1832 162 14 0 chrX 17954837 17955133 -159019007 + AluJb SINE Alu 1 300 -12 385 191 0 27 chrX 17955158 17955184 -159018956 + GA-rich Low_complexity Low_complexity 4 29 -81 2293 93 6 3 chrX 17955184 17955495 -159018645 + AluSq SINE Alu 1 312 -1 385 191 0 27 chrX 17955495 17955578 -159018562 + GA-rich Low_complexity Low_complexity 29 110 0 2743 216 30 16 chrX 17955693 17956388 -159017752 + L1M4 LINE L1 3588 4292 -1854 21 0 0 0 chrX 17956677 17956698 -159017442 + AT_rich Low_complexity Low_complexity 1 21 0 265 215 0 46 chrX 17956724 17956789 -159017351 + MLT1J LTR MaLR 3 64 -447 1705 169 23 10 chrX 17956805 17957112 -159017028 - AluJb SINE Alu -1 311 1 374 339 83 16 chrX 17957147 17957339 -159016801 + MLT1J LTR MaLR 240 444 -67 895 274 71 62 chrX 17958224 17958659 -159015481 + MLT1J LTR MaLR 9 447 -64 341 331 97 32 chrX 17958689 17959227 -159014913 - L1MEc LINE L1 -4589 2018 1446 367 275 70 47 chrX 17959311 17959642 -159014498 - L1MEc LINE L1 -5204 1399 887 239 154 15 31 chrX 17959709 17959774 -159014366 + (TA)n Simple_repeat Simple_repeat 2 65 0 630 112 95 9 chrX 17959774 17959890 -159014250 - L1MC2 LINE L1 -10 6334 6209 189 0 0 0 chrX 17959950 17959971 -159014169 + (CA)n Simple_repeat Simple_repeat 1 21 0 3577 154 11 42 chrX 17960138 17960389 -159013751 + L1M1 LINE L1 4543 4800 -1504 409 187 76 40 chrX 17960389 17960537 -159013603 + LTR19C LTR ERV1 39 227 -552 3577 154 11 42 chrX 17960537 17961454 -159012686 + L1M1 LINE L1 4800 5721 -583 1697 217 111 82 chrX 17961454 17962202 -159011938 - LTR19C LTR ERV1 0 779 7 3762 84 10 29 chrX 17962208 17962789 -159011351 + L1MA1 LINE L1 5733 6302 0 245 325 18 0 chrX 17962970 17963084 -159011056 + L1M4 LINE L1 4460 4575 -1571 268 377 57 0 chrX 17963178 17963284 -159010856 - L2 LINE L2 0 3272 3161 2318 93 3 3 chrX 17963339 17963641 -159010499 + AluSc SINE Alu 1 302 -7 343 289 111 54 chrX 17963893 17964208 -159009932 + L1M4 LINE L1 4933 5265 -881 23 33 0 0 chrX 17964320 17964350 -159009790 + AT_rich Low_complexity Low_complexity 1 30 0 192 226 0 0 chrX 17964380 17964442 -159009698 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 1656 219 99 38 chrX 17965032 17965508 -159008632 + MLT1D LTR MaLR 1 505 0 35 41 0 0 chrX 17966686 17966735 -159007405 + AT_rich Low_complexity Low_complexity 1 49 0 1470 287 83 21 chrX 17967063 17967620 -159006520 - MLT1E LTR MaLR 0 593 3 1196 174 39 130 chrX 17967847 17968256 -159005884 - MLT1A2 LTR MaLR -2 372 1 512 304 99 20 chrX 17968510 17968711 -159005429 + L2 LINE L2 3096 3312 -1 32 0 0 0 chrX 17968740 17968772 -159005368 + AT_rich Low_complexity Low_complexity 1 32 0 2750 231 83 42 chrX 17968862 17969649 -159004491 + MER21B LTR ERV1 20 838 -25 28 29 0 0 chrX 17969737 17969772 -159004368 + AT_rich Low_complexity Low_complexity 1 35 0 1765 226 128 15 chrX 17970603 17971143 -159002997 - MER77 LTR ERV1 -4 601 1 327 276 29 98 chrX 17971719 17971832 -159002308 - MLT1J LTR MaLR -52 459 371 2222 99 0 34 chrX 17971832 17972154 -159001986 - AluSx SINE Alu -1 311 1 327 276 29 98 chrX 17972154 17972286 -159001854 - MLT1J LTR MaLR -140 371 231 593 268 71 25 chrX 17972497 17972852 -159001288 - L1MC4a LINE L1 -158 5963 5588 431 228 54 0 chrX 17973191 17973283 -159000857 - MER5A DNA MER1_type -84 105 9 1533 194 70 141 chrX 17973699 17974287 -158999853 - MLT1E1 LTR MaLR -108 546 1 3210 148 34 37 chrX 17974400 17975044 -158999096 + L1MA7 LINE L1 5650 6291 0 29 0 0 0 chrX 17975067 17975096 -158999044 + AT_rich Low_complexity Low_complexity 1 29 0 1976 218 67 154 chrX 17975100 17977401 -158996739 + L1PB4 LINE L1 2 2142 -4706 14615 102 4 15 chrX 17977507 17979023 -158995117 + L1P LINE L1 709 2195 -3951 2482 52 0 13 chrX 17979023 17979332 -158994808 + AluY SINE Alu 1 305 -6 14615 102 4 15 chrX 17979332 17980029 -158994111 + L1P LINE L1 2195 2898 -3248 371 288 71 35 chrX 17980404 17980602 -158993538 - LTR16A LTR ERVL -169 281 77 212 293 13 53 chrX 17980877 17980952 -158993188 + MIR3 SINE MIR 90 161 -47 2232 115 6 0 chrX 17981201 17981514 -158992626 + L1MC1 LINE L1 5999 6313 -20 6050 228 20 32 chrX 17982306 17983135 -158991005 + L1PB4 LINE L1 2158 2995 -3853 2030 109 39 0 chrX 17983135 17983418 -158990722 + AluSq SINE Alu 3 296 -17 6050 228 20 32 chrX 17983418 17984712 -158989428 + L1PB4 LINE L1 2995 4355 -2493 762 214 16 0 chrX 17984713 17984895 -158989245 + L1PB4 LINE L1 4934 5118 -1730 520 146 0 62 chrX 17985042 17985234 -158988906 + (AGGGGG)n Simple_repeat Simple_repeat 1 180 0 * 645 157 0 0 chrX 17985187 17985321 -158988819 + G-rich Low_complexity Low_complexity 1 134 0 39394 42 29 2 chrX 17985367 17990334 -158983806 + L1P LINE L1 111 5211 -935 2599 80 8 21 chrX 17990442 17990817 -158983323 + L1PB1 LINE L1 5782 6151 0 4973 182 18 6 chrX 17990817 17992175 -158981965 + L1PB4 LINE L1 5112 6498 -360 390 57 0 0 chrX 17992175 17992228 -158981912 + (CA)n Simple_repeat Simple_repeat 2 54 0 4973 182 18 6 chrX 17992228 17992592 -158981548 + L1PB4 LINE L1 6498 6856 -2 25 31 0 0 chrX 17992971 17993003 -158981137 + AT_rich Low_complexity Low_complexity 1 32 0 234 380 35 31 chrX 17993149 17993375 -158980765 + L3 LINE CR1 1332 1558 -19 209 313 40 81 chrX 17994516 17994615 -158979525 + L2 LINE L2 3143 3237 -35 300 303 25 33 chrX 17995031 17995153 -158978987 - MIR SINE MIR -139 123 3 23 33 0 0 chrX 17995816 17995846 -158978294 + AT_rich Low_complexity Low_complexity 1 30 0 364 190 35 58 chrX 17996181 17996355 -158977785 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 1488 58 0 16 chrX 17997920 17998108 -158976032 + AluY SINE Alu 123 307 -4 312 276 54 20 chrX 17998676 17998879 -158975261 + L1MC4 LINE L1 2268 2477 -3669 640 234 13 57 chrX 17999068 17999295 -158974845 - L1M4 LINE L1 -2140 4006 3790 2493 51 0 0 chrX 17999451 17999745 -158974395 + AluY SINE Alu 1 294 -17 22 56 0 0 chrX 17999805 17999841 -158974299 + AT_rich Low_complexity Low_complexity 1 36 0 994 289 93 36 chrX 18000374 18000814 -158973326 + L1MC4 LINE L1 3579 3993 -2153 1453 115 0 10 chrX 18000814 18001023 -158973117 - AluSg/x SINE Alu -6 304 98 994 289 93 36 chrX 18001023 18001496 -158972644 + L1MC4 LINE L1 3993 4544 -1602 1390 116 39 0 chrX 18001549 18001781 -158972359 + L1MA4 LINE L1 6056 6296 -4 549 233 83 99 chrX 18001790 18002366 -158971774 + L1MC4 LINE L1 7459 8025 -17 357 65 0 0 chrX 18002422 18002468 -158971672 - L1MA2 LINE L1 -473 5831 5786 406 300 128 21 chrX 18002539 18003107 -158971033 + L1MC4 LINE L1 5273 5862 -300 202 169 0 34 chrX 18003114 18003173 -158970967 + (TA)n Simple_repeat Simple_repeat 1 57 0 379 289 34 73 chrX 18004185 18004389 -158969751 - MLT1H LTR MaLR -147 402 207 181 259 139 65 chrX 18004758 18004866 -158969274 + L2 LINE L2 3180 3295 -18 918 206 0 11 chrX 18005128 18005303 -158968837 + MER5B DNA MER1_type 1 173 -5 279 0 0 0 chrX 18006908 18006939 -158967201 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 5385 36 2 0 chrX 18006939 18007579 -158966561 - L1PA5 LINE L1 -15 6139 5499 207 167 0 0 chrX 18007726 18007768 -158966372 + (TA)n Simple_repeat Simple_repeat 2 43 0 293 217 35 87 chrX 18007869 18007984 -158966156 - MIR SINE MIR -35 227 119 183 406 0 0 chrX 18008069 18008133 -158966007 - MIR SINE MIR -196 66 3 28 61 0 0 chrX 18009433 18009482 -158964658 + AT_rich Low_complexity Low_complexity 1 49 0 4968 142 22 39 chrX 18009922 18010747 -158963393 - L1PB4 LINE L1 -7 6149 5333 1854 162 0 13 chrX 18010747 18011061 -158963079 - AluJo SINE Alu 0 312 3 4968 142 22 39 chrX 18011061 18011243 -158962897 - L1PB4 LINE L1 -823 5333 5149 260 250 125 0 chrX 18011271 18011327 -158962813 - MER31-int LTR ERV1 -1019 3917 3855 1690 103 45 8 chrX 18011368 18011611 -158962529 + AluSx SINE Alu 52 303 -9 918 113 0 8 chrX 18011615 18011748 -158962392 + L1P LINE L1 11 142 -6004 20998 40 2 1 chrX 18011945 18015347 -158958793 + L1PA5 LINE L1 2745 6152 -2 577 266 65 67 chrX 18015370 18015787 -158958353 - MER31-int LTR ERV1 -1121 3815 3400 1600 148 13 43 chrX 18015862 18016166 -158957974 + AluJo SINE Alu 1 295 -17 346 229 57 105 chrX 18016481 18016691 -158957449 - MER31-int LTR ERV1 -1919 3017 2818 285 237 15 46 chrX 18016786 18016917 -158957223 - MER31-int LTR ERV1 -2185 2751 2625 232 236 0 36 chrX 18017823 18017878 -158956262 + MER34 LTR ERV1 70 122 -420 * 2086 187 58 12 chrX 18017856 18018283 -158955857 + MER39 LTR ERV1 261 707 0 654 236 61 34 chrX 18019487 18019750 -158954390 - LTR37B LTR ERV1 -1 467 198 775 184 164 10 chrX 18020618 18020701 -158953439 + MER44D DNA MER2_type 1 70 -2421 180 0 0 0 chrX 18020701 18020721 -158953419 + (GA)n Simple_repeat Simple_repeat 1 20 0 775 184 164 10 chrX 18020721 18020844 -158953296 + MER44D DNA MER2_type 70 509 -100 234 286 41 0 chrX 18020844 18020942 -158953198 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 446 218 35 0 chrX 18020962 18021049 -158953091 + MER44D DNA MER2_type 498 587 -18 2778 237 165 46 chrX 18021456 18022431 -158951709 + L1MD2 LINE L1 18 1108 -5432 * 5549 225 31 83 chrX 18022416 18023711 -158950429 + L1MD2 LINE L1 3433 4794 -1842 1656 112 134 11 chrX 18023711 18023979 -158950161 + AluSx SINE Alu 2 302 0 5549 225 31 83 chrX 18023979 18024428 -158949712 + L1MD2 LINE L1 4794 5265 -1371 1994 52 0 0 chrX 18024428 18024678 -158949462 - L1PA5 LINE L1 0 6154 5905 5549 225 31 83 chrX 18024678 18025033 -158949107 + L1MD2 LINE L1 5265 5637 -999 1591 174 7 27 chrX 18025033 18025327 -158948813 + AluJo SINE Alu 1 288 -24 5549 225 31 83 chrX 18025327 18026596 -158947544 + L1MD2 LINE L1 5637 6621 -15 1336 181 76 32 chrX 18026597 18026874 -158947266 - AluJo SINE Alu -21 291 3 29 0 0 0 chrX 18027012 18027041 -158947099 + AT_rich Low_complexity Low_complexity 1 29 0 268 302 109 33 chrX 18027068 18027343 -158946797 + HAL1b LINE L1 279 574 -774 1594 208 56 0 chrX 18027471 18027812 -158946328 - MER90 LTR ERV1 -215 360 1 454 253 0 0 chrX 18028375 18028474 -158945666 - MER94 DNA DNA -34 100 2 2223 104 3 3 chrX 18028617 18028914 -158945226 + AluSg SINE Alu 1 297 -13 24 32 0 0 chrX 18029245 18029276 -158944864 + AT_rich Low_complexity Low_complexity 1 31 0 391 173 48 10 chrX 18029276 18029380 -158944760 + L1MA7 LINE L1 6183 6290 -1 413 263 97 70 chrX 18029759 18030172 -158943968 + L1MC/D LINE L1 4282 4705 -1441 30 0 0 0 chrX 18030366 18030396 -158943744 + AT_rich Low_complexity Low_complexity 1 30 0 2225 88 0 36 chrX 18030451 18030758 -158943382 + AluSx SINE Alu 1 296 -16 356 350 47 28 chrX 18030850 18031170 -158942970 + L1MC/D LINE L1 5494 5819 -1989 24 32 0 0 chrX 18031439 18031470 -158942670 + AT_rich Low_complexity Low_complexity 1 31 0 1090 135 0 24 chrX 18031544 18031714 -158942426 - AluSg/x SINE Alu -12 300 135 1469 164 4 0 chrX 18031901 18032157 -158941983 - L1P LINE L1 -1085 5061 4805 * 1507 132 4 0 chrX 18032147 18032390 -158941750 + L1P LINE L1 5057 5300 -846 6609 83 10 0 chrX 18032390 18033359 -158940781 + L1PA11 LINE L1 5197 6174 0 2185 171 81 38 chrX 18033683 18034163 -158939977 + MLT1D LTR MaLR 5 505 0 1507 162 68 145 chrX 18034329 18034886 -158939254 - MER67D LTR ERV1 0 514 1 27 0 0 0 chrX 18035546 18035573 -158938567 + AT_rich Low_complexity Low_complexity 1 27 0 304 235 0 41 chrX 18036280 18036378 -158937762 + HsTC2 DNA Tc2 1 94 -1804 180 0 0 0 chrX 18036763 18036783 -158937357 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chrX 18038083 18038104 -158936036 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 272 318 25 60 chrX 18038261 18038462 -158935678 + HAL1 LINE L1 1259 1452 -1055 331 311 72 62 chrX 18038665 18038970 -158935170 + HAL1b LINE L1 434 741 -607 7252 127 19 24 chrX 18039167 18039884 -158934256 + Tigger3b DNA MER2_type 1 721 -2307 1512 191 17 17 chrX 18039884 18040178 -158933962 + AluJo SINE Alu 1 294 -18 7252 127 19 24 chrX 18040178 18040407 -158933733 + Tigger3b DNA MER2_type 721 950 -2078 2331 88 0 10 chrX 18040407 18040713 -158933427 - AluSq SINE Alu -10 303 1 7252 127 19 24 chrX 18040713 18041003 -158933137 + Tigger3b DNA MER2_type 950 1231 0 21 0 0 0 chrX 18041143 18041164 -158932976 + AT_rich Low_complexity Low_complexity 1 21 0 1836 270 109 60 chrX 18041196 18042535 -158931605 + HAL1 LINE L1 47 1451 -1056 237 267 0 17 chrX 18042789 18042879 -158931261 + G-rich Low_complexity Low_complexity 1 88 0 352 302 94 5 chrX 18043011 18043203 -158930937 + HAL1 LINE L1 1439 1647 -860 191 306 0 0 chrX 18043297 18043346 -158930794 + L2 LINE L2 3262 3310 -3 25 0 0 0 chrX 18044035 18044060 -158930080 + AT_rich Low_complexity Low_complexity 1 25 0 270 365 74 19 chrX 18044188 18044459 -158929681 - MLT1K LTR MaLR -172 416 131 880 311 113 6 chrX 18044494 18044822 -158929318 - LTR16A LTR ERVL -17 433 71 240 278 33 22 chrX 18044928 18045018 -158929122 + C-rich Low_complexity Low_complexity 6 96 0 * 282 269 0 51 chrX 18044953 18045128 -158929012 + CT-rich Low_complexity Low_complexity 2 167 0 892 191 38 0 chrX 18045609 18045766 -158928374 - MER45A DNA AcHobo -4 174 12 2154 188 105 11 chrX 18045991 18046449 -158927691 - MLT1D LTR MaLR -4 501 1 583 184 40 16 chrX 18049486 18049611 -158924529 - MER63 DNA MER1_type -308 754 1 192 268 0 0 chrX 18049650 18049691 -158924449 + MIR SINE MIR 12 52 -210 190 352 0 0 chrX 18049696 18049767 -158924373 + MIR SINE MIR 189 259 -3 348 347 88 25 chrX 18049848 18050165 -158923975 + L2 LINE L2 2612 2948 -366 449 246 80 60 chrX 18050735 18050934 -158923206 - MIR SINE MIR -4 258 56 244 228 0 18 chrX 18051275 18051332 -158922808 - L1ME LINE L1 -307 5814 5759 24 0 0 0 chrX 18052133 18052157 -158921983 + AT_rich Low_complexity Low_complexity 1 24 0 190 349 15 0 chrX 18052600 18052666 -158921474 + MIR SINE MIR 2 68 -194 183 385 0 0 chrX 18052704 18052787 -158921353 - MIR SINE MIR -110 152 70 323 244 231 27 chrX 18053248 18053405 -158920735 + MIR3 SINE MIR 5 187 -21 24 0 0 0 chrX 18054672 18054696 -158919444 + AT_rich Low_complexity Low_complexity 1 24 0 2402 161 39 2 chrX 18055144 18055555 -158918585 + MSTB LTR MaLR 1 426 0 28 29 0 0 chrX 18055875 18055910 -158918230 + AT_rich Low_complexity Low_complexity 1 35 0 390 271 279 0 chrX 18056485 18056625 -158917515 + MIR SINE MIR 84 262 0 5381 107 40 30 chrX 18056989 18058292 -158915848 + L1PA16 LINE L1 4842 6157 -9 21 0 0 0 chrX 18058292 18058313 -158915827 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chrX 18058625 18058656 -158915484 + AT_rich Low_complexity Low_complexity 1 31 0 2167 107 3 17 chrX 18109105 18109404 -158864736 + AluSq SINE Alu 1 295 -18 2124 108 14 0 chrX 18109529 18109815 -158864325 + AluSg SINE Alu 1 290 -20 32 0 0 0 chrX 18109819 18109851 -158864289 + AT_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chrX 18109894 18109920 -158864220 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 2207 176 95 6 chrX 18110808 18111280 -158862860 + MER67D LTR ERV1 1 514 0 711 176 93 78 chrX 18111852 18112013 -158862127 + MER3 DNA MER1_type 2 169 -40 2200 95 0 0 chrX 18112013 18112331 -158861809 + AluSp SINE Alu 1 318 0 711 176 93 78 chrX 18112331 18112372 -158861768 + MER3 DNA MER1_type 169 208 -1 804 189 25 61 chrX 18112492 18112688 -158861452 - MER20 DNA MER1_type 0 219 31 256 333 65 0 chrX 18113300 18113408 -158860732 + MIR SINE MIR 20 134 -128 1459 191 8 109 chrX 18114493 18114869 -158859271 + MLT1A1 LTR MaLR 3 340 -25 21 36 0 0 chrX 18115074 18115102 -158859038 + AT_rich Low_complexity Low_complexity 1 28 0 189 175 0 0 chrX 18116043 18116083 -158858057 + GA-rich Low_complexity Low_complexity 2 41 0 2191 89 7 3 chrX 18116428 18116721 -158857419 + AluSx SINE Alu 1 294 -18 416 251 140 39 chrX 18117021 18117397 -158856743 + L1ME LINE L1 5414 5822 -299 1293 274 41 33 chrX 18117536 18118021 -158856119 + L1MDa LINE L1 35 523 -6017 380 318 94 110 chrX 18118132 18118676 -158855464 + L1MDa LINE L1 479 1013 -5527 1872 213 40 51 chrX 18118721 18119327 -158854813 + L1MDa LINE L1 1410 2008 -4532 1923 129 11 0 chrX 18119509 18119795 -158854345 + AluSx SINE Alu 14 302 -10 24 32 0 0 chrX 18120341 18120372 -158853768 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chrX 18120575 18120618 -158853522 + AT_rich Low_complexity Low_complexity 1 43 0 280 325 40 40 chrX 18121275 18121401 -158852739 + MIR3 SINE MIR 10 135 -73 510 166 31 161 chrX 18122505 18122698 -158851442 + MSTB2 LTR MaLR 289 456 -1 963 262 17 8 chrX 18122784 18123021 -158851119 + MSTB1 LTR MaLR 193 431 -1 474 326 27 36 chrX 18123077 18123301 -158850839 - L2 LINE L2 0 3313 3092 459 239 18 9 chrX 18123533 18123642 -158850498 - MER5B DNA MER1_type 0 178 69 273 262 129 36 chrX 18124646 18124871 -158849269 + L1MC5 LINE L1 7280 7525 -436 2404 37 0 20 chrX 18125067 18125392 -158848748 + AluY SINE Alu 1 311 0 1636 182 27 2 chrX 18125968 18126381 -158847759 - L1M2 LINE L1 -743 5403 5025 330 247 49 99 chrX 18126686 18126848 -158847292 + MER5A DNA MER1_type 36 189 0 349 347 59 12 chrX 18127029 18127199 -158846941 - MER5B DNA MER1_type 0 178 1 528 126 0 0 chrX 18127589 18127676 -158846464 + (CA)n Simple_repeat Simple_repeat 2 88 0 262 115 39 0 chrX 18128264 18128316 -158845824 + (TA)n Simple_repeat Simple_repeat 1 54 0 304 210 57 76 chrX 18128555 18128744 -158845396 + L1P5 LINE L1 5334 5512 -654 181 289 0 82 chrX 18128886 18128983 -158845157 + L2 LINE L2 3152 3240 -73 31 58 0 0 chrX 18129035 18129087 -158845053 + AT_rich Low_complexity Low_complexity 1 52 0 4970 173 34 26 chrX 18129102 18129859 -158844281 - L1MA7 LINE L1 -10 6281 5532 2323 93 0 0 chrX 18129859 18130161 -158843979 + AluSc SINE Alu 1 302 -7 4970 173 34 26 chrX 18130161 18131153 -158842987 - L1MA7 LINE L1 -759 5532 4528 2169 64 0 0 chrX 18131216 18131482 -158842658 + AluY SINE Alu 39 304 -7 23 0 0 0 chrX 18131598 18131621 -158842519 + AT_rich Low_complexity Low_complexity 1 23 0 1601 130 8 82 chrX 18131825 18131889 -158842251 + L1MB2 LINE L1 5843 5910 -261 1784 157 82 3 chrX 18131889 18132208 -158841932 + MER2 DNA MER2_type 1 344 0 1601 130 8 82 chrX 18132208 18132496 -158841644 + L1MB2 LINE L1 5910 6169 -2 1433 154 158 0 chrX 18132539 18132850 -158841290 + MER46B DNA MER2_type 2 236 0 26 30 0 0 chrX 18133675 18133708 -158840432 + AT_rich Low_complexity Low_complexity 1 33 0 955 212 4 56 chrX 18133791 18134022 -158840118 + MER20 DNA MER1_type 1 219 0 259 288 0 14 chrX 18135118 18135198 -158838942 + MIR SINE MIR 71 141 -67 2233 109 0 0 chrX 18135485 18135788 -158838352 - AluSx SINE Alu -9 303 1 423 0 0 0 chrX 18135815 18135862 -158838278 + (CA)n Simple_repeat Simple_repeat 2 48 0 469 194 19 0 chrX 18136401 18136509 -158837631 - L1MA9 LINE L1 0 6312 6203 1329 173 23 11 chrX 18136514 18136780 -158837360 + L1 LINE L1 3922 4190 -1956 208 258 16 0 chrX 18137563 18137625 -158836515 + GA-rich Low_complexity Low_complexity 2 64 0 23 33 0 0 chrX 18138272 18138302 -158835838 + AT_rich Low_complexity Low_complexity 1 30 0 285 103 26 39 chrX 18138619 18138697 -158835443 + A-rich Low_complexity Low_complexity 2 78 0 1168 224 0 0 chrX 18139416 18139639 -158834501 - MER58A DNA MER1_type -1 223 1 26 0 0 0 chrX 18139923 18139949 -158834191 + AT_rich Low_complexity Low_complexity 1 26 0 4654 153 21 25 chrX 18140054 18140118 -158834022 + L1PA16 LINE L1 5260 5323 -843 1832 73 61 4 chrX 18140118 18140363 -158833777 + AluY SINE Alu 39 297 -14 4654 153 21 25 chrX 18140363 18141184 -158832956 + L1PA16 LINE L1 5323 6142 -24 2148 116 0 0 chrX 18141314 18141617 -158832523 - AluSx SINE Alu -9 303 1 21 0 0 0 chrX 18141894 18141915 -158832225 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chrX 18142931 18142955 -158831185 + AT_rich Low_complexity Low_complexity 1 24 0 2813 133 123 34 chrX 18142979 18143541 -158830599 - LTR9 LTR ERV1 0 612 1 3156 219 71 115 chrX 18143685 18144121 -158830019 - MER109 Unknown Unknown -750 1682 1228 828 86 36 21 chrX 18144121 18144261 -158829879 - L1MA5 LINE L1 -2 6298 6157 3156 219 71 115 chrX 18144261 18145624 -158828516 - MER109 Unknown Unknown -1204 1228 1 15863 140 37 5 chrX 18145839 18148483 -158825657 - Tigger4(Zombi) DNA MER2_type 0 2731 1 245 299 19 19 chrX 18148970 18149077 -158825063 - HAL1b LINE L1 -1021 327 221 267 300 23 23 chrX 18149442 18149542 -158824598 + CT-rich Low_complexity Low_complexity 3 173 0 1877 137 58 28 chrX 18149628 18149992 -158824148 + THE1C LTR MaLR 1 375 0 9800 123 9 38 chrX 18149995 18151618 -158822522 + THE1C-int LTR MaLR 4 1580 0 1768 146 61 30 chrX 18151619 18151982 -158822158 + THE1C LTR MaLR 2 375 0 447 139 0 0 chrX 18153667 18153753 -158820387 + L1PB1 LINE L1 6065 6150 -1 2021 138 0 0 chrX 18154187 18154484 -158819656 + AluSg SINE Alu 1 297 -13 28 48 0 0 chrX 18154595 18154637 -158819503 + AT_rich Low_complexity Low_complexity 1 42 0 1540 211 52 55 chrX 18155337 18155739 -158818401 + MER92A LTR ERV1 1 401 -11 505 307 48 30 chrX 18155797 18156028 -158818112 - MLT1K LTR MaLR -22 566 332 568 346 9 14 chrX 18156453 18156664 -158817476 - MLT1K LTR MaLR -296 292 83 1523 244 111 19 chrX 18156693 18156884 -158817256 + MER90 LTR ERV1 1 173 -402 2899 110 2 70 chrX 18156884 18157395 -158816745 + L1PA15 LINE L1 5677 6152 -13 1523 244 111 19 chrX 18157395 18157724 -158816416 + MER90 LTR ERV1 173 569 -6 1689 216 136 70 chrX 18159041 18159333 -158814807 - MLT1E1 LTR MaLR -2 652 381 1509 81 25 51 chrX 18159333 18159569 -158814571 - MER30 DNA MER1_type 0 230 1 1689 216 136 70 chrX 18159569 18159888 -158814252 - MLT1E1 LTR MaLR -273 381 1 308 280 93 0 chrX 18160108 18160215 -158813925 - MIR SINE MIR 0 262 146 182 411 14 20 chrX 18160454 18160600 -158813540 + MIR3 SINE MIR 28 172 -36 285 392 88 10 chrX 18160744 18160938 -158813202 + MIR SINE MIR 22 230 -32 315 0 0 0 chrX 18161108 18161143 -158812997 + (TG)n Simple_repeat Simple_repeat 2 36 0 185 309 36 48 chrX 18162285 18162369 -158811771 + MIR3 SINE MIR 121 203 -5 293 306 31 10 chrX 18163224 18163322 -158810818 + LTR67 LTR ERVL 99 198 -359 303 86 66 66 chrX 18163759 18163910 -158810230 + (TTATA)n Simple_repeat Simple_repeat 2 152 0 194 0 39 0 chrX 18163920 18163946 -158810194 + (TATAA)n Simple_repeat Simple_repeat 5 31 0 490 185 0 0 chrX 18163992 18164073 -158810067 - MER58B DNA MER1_type 0 341 261 26 50 0 0 chrX 18164073 18164113 -158810027 + AT_rich Low_complexity Low_complexity 1 40 0 2320 110 3 0 chrX 18164198 18164508 -158809632 + AluSp SINE Alu 1 311 -2 26 64 0 0 chrX 18164943 18164990 -158809150 + AT_rich Low_complexity Low_complexity 1 47 0 232 156 78 109 chrX 18165223 18165287 -158808853 + MLT1L LTR MaLR 1 62 -553 531 256 111 25 chrX 18165348 18165547 -158808593 + MLT1L LTR MaLR 349 564 -51 2356 63 3 0 chrX 18165613 18165927 -158808213 + AluSp SINE Alu 1 315 0 371 314 93 51 chrX 18166579 18166998 -158807142 + L1M4 LINE L1 3874 4321 -1825 884 274 9 5 chrX 18166998 18167221 -158806919 - MER58A DNA MER1_type 0 224 1 371 314 93 51 chrX 18167221 18167327 -158806813 + L1M4 LINE L1 4321 4421 -1725 286 270 86 66 chrX 18167842 18167994 -158806146 - MIR SINE MIR -8 254 100 23 0 0 0 chrX 18168510 18168533 -158805607 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 18168679 18168700 -158805440 + AT_rich Low_complexity Low_complexity 1 21 0 216 159 32 16 chrX 18169028 18169091 -158805049 + (TA)n Simple_repeat Simple_repeat 2 65 0 24 32 0 0 chrX 18169337 18169368 -158804772 + AT_rich Low_complexity Low_complexity 1 31 0 207 250 29 77 chrX 18170566 18170670 -158803470 + MIR3 SINE MIR 103 201 -7 3070 123 7 2 chrX 18170836 18171292 -158802848 + LTR22A LTR ERVK 1 458 0 2456 87 0 0 chrX 18172543 18172854 -158801286 - AluY SINE Alu 0 311 1 22 0 0 0 chrX 18172952 18172974 -158801166 + AT_rich Low_complexity Low_complexity 1 22 0 257 298 0 0 chrX 18172981 18173038 -158801102 - L2 LINE L2 -8 3264 3208 1548 170 61 0 chrX 18173045 18173322 -158800818 - AluJo SINE Alu -14 298 5 2045 135 27 0 chrX 18174542 18174839 -158799301 - AluSx SINE Alu -7 305 1 747 278 63 73 chrX 18175364 18175763 -158798377 - MLT1I LTR MaLR 0 409 15 3053 147 23 0 chrX 18175850 18176120 -158798020 + Tigger1 DNA MER2_type 941 1203 -1215 2299 76 7 13 chrX 18176120 18176423 -158797717 + AluSp SINE Alu 1 301 -12 3053 147 23 0 chrX 18176423 18176668 -158797472 + Tigger1 DNA MER2_type 1203 1468 -950 359 261 79 66 chrX 18177094 18177307 -158796833 + LTR16A1 LTR ERVL 145 378 -113 225 178 0 0 chrX 18178116 18178161 -158795979 + GA-rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chrX 18181135 18181163 -158792977 + AT_rich Low_complexity Low_complexity 1 28 0 2030 138 0 0 chrX 18181243 18181525 -158792615 - AluSx SINE Alu -30 282 1 1789 256 102 26 chrX 18182036 18182652 -158791488 + MLT2F LTR ERVL 1 663 0 279 0 0 0 chrX 18182758 18182789 -158791351 + (CA)n Simple_repeat Simple_repeat 2 32 0 1642 221 60 2 chrX 18182881 18183297 -158790843 - L1MD3 LINE L1 -14 7981 7542 321 26 0 0 chrX 18183320 18183358 -158790782 + (TG)n Simple_repeat Simple_repeat 1 38 0 1178 273 22 20 chrX 18183490 18183897 -158790243 - MLT1I LTR MaLR 0 409 2 312 27 0 0 chrX 18184077 18184114 -158790026 + (TG)n Simple_repeat Simple_repeat 2 38 0 815 284 13 4 chrX 18184879 18185104 -158789036 + LTR16B LTR ERVL 238 464 0 180 333 107 0 chrX 18188404 18188479 -158785661 + L2 LINE L2 3186 3268 -4 331 279 106 0 chrX 18188711 18188815 -158785325 + MIR3 SINE MIR 94 208 0 22 0 0 0 chrX 18188904 18188926 -158785214 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrX 18189272 18189302 -158784838 + AT_rich Low_complexity Low_complexity 1 30 0 207 288 16 88 chrX 18190229 18190354 -158783786 - MIR SINE MIR -1 207 91 214 327 27 60 chrX 18191018 18191168 -158782972 + MIR SINE MIR 8 152 -110 187 340 21 32 chrX 18191362 18191456 -158782684 + MIR SINE MIR 54 146 -116 449 204 0 9 chrX 18192106 18192214 -158781926 + GA-rich Low_complexity Low_complexity 3 109 0 657 250 49 64 chrX 18192512 18192776 -158781364 + MLT1H LTR MaLR 74 333 -216 4594 128 157 26 chrX 18193066 18194064 -158780076 + MER11B LTR ERVK 1 1232 -4 1556 46 0 0 chrX 18194789 18194983 -158779157 - L1P LINE L1 -1004 5142 4949 5301 26 3 2 chrX 18194983 18195635 -158778505 + L1PA4 LINE L1 5533 6155 0 239 390 65 30 chrX 18195791 18195991 -158778149 + L2 LINE L2 2645 2851 -463 214 307 55 55 chrX 18196039 18196166 -158777974 + L2 LINE L2 2973 3099 -214 2135 141 0 0 chrX 18196462 18196767 -158777373 - AluSx SINE Alu -7 305 1 1800 122 6 97 chrX 18197416 18197736 -158776404 - AluSx SINE Alu -17 295 5 2115 68 0 53 chrX 18197948 18198050 -158776090 + L1PA8 LINE L1 5865 5971 -201 6125 132 21 32 chrX 18198050 18199133 -158775007 - MER11C LTR ERVK 0 1071 1 2115 68 0 53 chrX 18199133 18199352 -158774788 + L1PA8 LINE L1 5971 6169 -3 1402 200 45 99 chrX 18199544 18200028 -158774112 + LTR40b LTR ERVL 2 459 -3 1346 255 60 78 chrX 18200095 18200813 -158773327 - L1ME3A LINE L1 -12 6158 5454 209 425 34 14 chrX 18200991 18201198 -158772942 - L2 LINE L2 -212 3060 2850 285 214 171 0 chrX 18201385 18201455 -158772685 + MIR SINE MIR 97 178 -84 2263 88 3 32 chrX 18202232 18202540 -158771600 - AluSp SINE Alu -14 299 1 1520 149 16 24 chrX 18202833 18203149 -158770991 - MER4A LTR ERV1 -32 632 261 615 141 0 10 chrX 18203149 18203248 -158770892 - MER4A LTR ERV1 -566 98 1 3419 99 46 36 chrX 18203249 18203994 -158770146 - MER4A-int LTR ERV1 0 6598 4188 2177 104 0 13 chrX 18204485 18204784 -158769356 - AluSg SINE Alu -15 295 1 295 298 61 29 chrX 18205314 18205559 -158768581 + L1MEd LINE L1 631 883 -5236 3624 115 15 20 chrX 18205559 18206157 -158767983 + L1MA8 LINE L1 5695 6289 -2 266 39 0 115 chrX 18206209 18206261 -158767879 - MADE1 DNA Mariner -34 46 1 1413 210 135 42 chrX 18206402 18206860 -158767280 - MLT1D LTR MaLR 0 505 5 358 263 101 43 chrX 18207284 18207627 -158766513 + L1MEd LINE L1 1112 1526 -4784 253 377 149 34 chrX 18208039 18209038 -158765102 - L2 LINE L2 -2102 1212 99 764 133 0 0 chrX 18209537 18209650 -158764490 + FLAM_C SINE Alu 13 125 -18 3019 53 0 0 chrX 18210193 18210571 -158763569 + L1PA8 LINE L1 5794 6171 -1 423 330 72 5 chrX 18210915 18211109 -158763031 - MIR SINE MIR -54 208 2 351 312 0 51 chrX 18211401 18211558 -158762582 + (CATATA)n Simple_repeat Simple_repeat 5 153 0 249 214 0 0 chrX 18211564 18211620 -158762520 - L1MC4 LINE L1 -1339 6703 6648 352 200 78 38 chrX 18212770 18212918 -158761222 - HsTC2 DNA Tc2 -5 1893 35 250 311 7 82 chrX 18213001 18213136 -158761004 - MLT1J2 LTR MaLR -128 322 198 291 54 0 0 chrX 18213146 18213183 -158760957 + (GA)n Simple_repeat Simple_repeat 2 38 0 276 222 0 14 chrX 18213642 18213714 -158760426 + (TA)n Simple_repeat Simple_repeat 2 72 0 1293 203 88 88 chrX 18214099 18214681 -158759459 + L1MC4 LINE L1 7460 8041 -1 43 20 0 0 chrX 18215048 18215098 -158759042 + AT_rich Low_complexity Low_complexity 1 50 0 378 281 26 17 chrX 18215116 18215267 -158758873 - MIR SINE MIR -62 146 2 23 0 0 0 chrX 18215286 18215309 -158758831 + AT_rich Low_complexity Low_complexity 1 23 0 801 222 61 17 chrX 18215976 18216156 -158757984 - MER5A DNA MER1_type -1 188 1 885 199 68 0 chrX 18216320 18216511 -158757629 - MER3 DNA MER1_type 0 209 6 326 80 20 0 chrX 18216659 18216709 -158757431 + (CA)n Simple_repeat Simple_repeat 1 51 0 2554 196 46 61 chrX 18217477 18217719 -158756421 + MLT1E3 LTR MaLR 1 245 -379 1662 102 0 15 chrX 18217719 18217983 -158756157 + L1MA2 LINE L1 6039 6298 -6 2554 196 46 61 chrX 18217983 18218401 -158755739 + MLT1E3 LTR MaLR 245 622 -2 26 50 0 0 chrX 18218985 18219025 -158755115 + AT_rich Low_complexity Low_complexity 1 40 0 181 319 14 28 chrX 18219252 18219324 -158754816 - MER5A DNA MER1_type -115 74 4 483 298 11 28 chrX 18219480 18219658 -158754482 + MER5A DNA MER1_type 2 176 -13 747 201 18 0 chrX 18220482 18220646 -158753494 - MER53 DNA DNA 0 189 23 312 280 47 9 chrX 18220650 18220757 -158753383 + MIR SINE MIR 122 232 -30 640 285 21 43 chrX 18222293 18222413 -158751727 - MIR SINE MIR -14 248 134 2035 100 14 0 chrX 18222413 18222703 -158751437 + AluY SINE Alu 1 294 -17 640 285 21 43 chrX 18222703 18222817 -158751323 - MIR SINE MIR -128 134 19 258 264 104 72 chrX 18223000 18223125 -158751015 - L2 LINE L2 -7 3306 3178 22 0 0 0 chrX 18226967 18226989 -158747151 + AT_rich Low_complexity Low_complexity 1 22 0 2179 259 69 14 chrX 18227104 18227773 -158746367 + L1ME3 LINE L1 5457 6162 0 24 32 0 0 chrX 18228014 18228045 -158746095 + AT_rich Low_complexity Low_complexity 1 31 0 1404 221 13 48 chrX 18228594 18228969 -158745171 + MLT1A1 LTR MaLR 4 365 0 883 361 82 16 chrX 18230165 18230738 -158743402 + L2 LINE L2 799 1409 -1905 6719 21 0 0 chrX 18230777 18231552 -158742588 - L1PA2 LINE L1 -5 6150 5376 708 330 108 44 chrX 18231554 18231852 -158742288 + L2 LINE L2 1390 1668 -1646 694 294 95 33 chrX 18231852 18232273 -158741867 - MLT1J2 LTR MaLR -1 449 3 708 330 108 44 chrX 18232273 18232746 -158741394 + L2 LINE L2 1668 2210 -1104 507 336 118 46 chrX 18232766 18233274 -158740866 + L2 LINE L2 2553 3085 -228 971 287 101 17 chrX 18233277 18233632 -158740508 - LTR16C LTR ERVL 0 491 107 342 333 63 39 chrX 18233806 18234013 -158740127 + L2 LINE L2 3101 3312 -1 409 342 6 37 chrX 18236152 18236313 -158737827 + L2 LINE L2 3153 3308 -5 26 30 0 0 chrX 18236784 18236817 -158737323 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chrX 18237850 18237888 -158736252 + AT_rich Low_complexity Low_complexity 1 38 0 3086 214 59 44 chrX 18237889 18238850 -158735290 - L1ME1 LINE L1 -21 6145 5174 341 294 40 57 chrX 18239023 18239200 -158734940 - L1MCc LINE L1 -6247 694 19 3273 190 25 20 chrX 18239222 18239928 -158734212 - MER67C LTR ERV1 0 710 1 384 339 0 70 chrX 18239965 18240151 -158733989 - MIR SINE MIR -56 206 34 912 267 202 20 chrX 18240403 18241004 -158733136 - L2 LINE L2 0 3313 2603 26 30 0 0 chrX 18242052 18242085 -158732055 + AT_rich Low_complexity Low_complexity 1 33 0 193 350 85 28 chrX 18242421 18242598 -158731542 - MIR3 SINE MIR -13 195 9 218 310 99 42 chrX 18243064 18243206 -158730934 - L2 LINE L2 -11 3302 3153 1006 280 109 37 chrX 18244433 18244890 -158729250 + LTR16C LTR ERVL 1 490 -1 1093 267 36 22 chrX 18245280 18245762 -158728378 - MLT1H LTR MaLR 0 549 29 21 36 0 0 chrX 18245858 18245886 -158728254 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chrX 18247014 18247045 -158727095 + AT_rich Low_complexity Low_complexity 1 31 0 207 194 0 0 chrX 18247315 18247351 -158726789 + (CATA)n Simple_repeat Simple_repeat 3 38 0 533 227 134 26 chrX 18247590 18247755 -158726385 + MER5A DNA MER1_type 4 189 0 614 193 143 6 chrX 18248025 18248186 -158725954 - MER3 DNA MER1_type -22 187 5 389 367 38 0 chrX 18248467 18248625 -158725515 + MIR3 SINE MIR 30 193 -15 225 321 152 51 chrX 18249176 18249413 -158724727 - L2 LINE L2 -185 3087 2827 1018 70 0 14 chrX 18249921 18250064 -158724076 - AluY SINE Alu 0 311 171 693 129 0 17 chrX 18250164 18250280 -158723860 + AluSg/x SINE Alu 191 304 -8 286 250 122 32 chrX 18250281 18250469 -158723671 + L1MDa LINE L1 2008 2212 -4328 1400 60 0 0 chrX 18250469 18250635 -158723505 + AluY SINE Alu 9 174 -137 1011 70 0 0 chrX 18250799 18250927 -158723213 + AluY SINE Alu 172 299 -12 4312 161 100 37 chrX 18250936 18251808 -158722332 + L1MD1 LINE L1 5106 6077 -165 2101 79 0 0 chrX 18251808 18252073 -158722067 - AluSg SINE Alu -10 300 36 4312 161 100 37 chrX 18252073 18252251 -158721889 + L1MD1 LINE L1 6077 6242 0 642 278 19 42 chrX 18252252 18252515 -158721625 + MIR SINE MIR 2 258 -4 29 60 0 0 chrX 18252833 18252883 -158721257 + AT_rich Low_complexity Low_complexity 1 50 0 1439 179 28 92 chrX 18253426 18253816 -158720324 + MLT1A1 LTR MaLR 1 365 0 1415 196 20 43 chrX 18254387 18254734 -158719406 + L1MA9 LINE L1 5936 6274 -38 2276 92 0 7 chrX 18254827 18255133 -158719007 + AluSp SINE Alu 2 305 -8 387 0 0 0 chrX 18255375 18255418 -158718722 + (TA)n Simple_repeat Simple_repeat 1 43 0 267 368 45 15 chrX 18255645 18255778 -158718362 - L2 LINE L2 -189 3083 2947 431 390 62 31 chrX 18255853 18256240 -158717900 - L2 LINE L2 -449 2865 2467 1768 211 36 28 chrX 18256240 18256721 -158717419 - MLT1F1 LTR MaLR -11 556 37 268 345 184 18 chrX 18256961 18257303 -158716837 - L2 LINE L2 -1064 2250 1852 789 267 71 8 chrX 18257354 18257594 -158716546 - LTR33A LTR ERVL 0 523 269 363 231 87 104 chrX 18257659 18257832 -158716308 - LTR33A LTR ERVL -350 173 4 247 356 31 25 chrX 18258362 18258522 -158715618 + MLT1L LTR MaLR 1 161 -454 213 39 0 0 chrX 18258894 18258920 -158715220 + (TG)n Simple_repeat Simple_repeat 2 27 0 2187 110 0 13 chrX 18258950 18259251 -158714889 - AluSx SINE Alu -15 297 1 1361 93 44 0 chrX 18259253 18259478 -158714662 - L1MA7 LINE L1 0 6291 6057 252 0 0 0 chrX 18260663 18260691 -158713449 + (T)n Simple_repeat Simple_repeat 1 28 0 5825 144 20 5 chrX 18261711 18262677 -158711463 - L1MA8 LINE L1 -4 6287 5308 2996 188 11 40 chrX 18262680 18263334 -158710806 + L1MA8 LINE L1 4663 5297 -849 2827 132 16 27 chrX 18263454 18263893 -158710247 - Tigger2a DNA MER2_type 0 434 1 579 227 20 7 chrX 18265203 18265353 -158708787 + L1MC4a LINE L1 6170 6321 -1487 429 309 65 53 chrX 18266348 18266860 -158707280 + L1MC4a LINE L1 5389 5804 -358 5138 83 52 0 chrX 18267616 18268268 -158705872 + LTR12 LTR ERV1 1 686 -2 395 339 81 21 chrX 18268733 18268969 -158705171 + MIR SINE MIR 13 262 0 1617 166 42 89 chrX 18272521 18272924 -158701216 - MLT1B LTR MaLR -5 385 2 21 0 0 0 chrX 18273305 18273326 -158700814 + AT_rich Low_complexity Low_complexity 1 21 0 229 313 57 34 chrX 18273430 18273695 -158700445 - L1M4 LINE L1 -2122 4024 3754 661 264 15 0 chrX 18273830 18274027 -158700113 + L1MD3 LINE L1 7788 7987 -8 1479 269 44 56 chrX 18274049 18274617 -158699523 + L1MC3 LINE L1 3 563 -5482 3093 248 102 30 chrX 18274723 18276504 -158697636 + L1MC3 LINE L1 571 2593 -4152 2002 134 0 0 chrX 18276504 18276781 -158697359 + AluJb SINE Alu 1 277 -35 3093 248 102 30 chrX 18276781 18276941 -158697199 + L1MC3 LINE L1 2593 2740 -4005 1767 139 35 19 chrX 18276944 18277260 -158696880 + L1MC2 LINE L1 6023 6343 -1 2322 66 0 17 chrX 18278078 18278405 -158695735 + AluY SINE Alu 1 322 0 8685 241 64 20 chrX 18278570 18281482 -158692658 + L1MC3 LINE L1 2690 5729 -835 1338 241 62 42 chrX 18281487 18281940 -158692200 + MLT1C LTR MaLR 6 467 0 4806 211 108 6 chrX 18281954 18283210 -158690930 + L1MC3 LINE L1 5738 7120 -1083 820 196 27 11 chrX 18283207 18283332 -158690808 + L1MC3 LINE L1 7348 7478 -725 * 2315 90 0 0 chrX 18283332 18283620 -158690520 - AluSc SINE Alu -19 290 3 820 196 27 11 chrX 18283620 18283678 -158690462 + L1MC3 LINE L1 7478 7534 -669 364 222 101 0 chrX 18283675 18283774 -158690366 + L1MC3 LINE L1 8095 8203 0 * 243 150 25 0 chrX 18285953 18285993 -158688147 - Charlie3 DNA MER1_type -315 2395 2355 558 318 46 38 chrX 18286008 18286508 -158687632 + L1MC4a LINE L1 5403 5906 -1902 23 0 0 0 chrX 18286574 18286597 -158687543 + AT_rich Low_complexity Low_complexity 1 23 0 256 331 103 7 chrX 18286807 18286932 -158687208 - MLT1J2 LTR MaLR -34 416 279 252 152 65 0 chrX 18286932 18286978 -158687162 - MER61E LTR ERV1 -3 566 518 2325 103 7 0 chrX 18287269 18287579 -158686561 - AluSx SINE Alu 0 312 1 1658 254 53 54 chrX 18287921 18288045 -158686095 + MLT1E2 LTR MaLR 3 126 -500 3930 71 6 48 chrX 18288045 18288583 -158685557 - L1PA13 LINE L1 0 6163 5649 1658 254 53 54 chrX 18288583 18289083 -158685057 + MLT1E2 LTR MaLR 126 626 0 281 314 43 57 chrX 18289938 18290078 -158684062 + MIR3 SINE MIR 5 142 -66 1376 182 103 30 chrX 18291121 18291451 -158682689 + MLT1A1 LTR MaLR 1 354 -11 2116 104 34 0 chrX 18295669 18295966 -158678174 - AluSx SINE Alu -5 307 1 392 321 14 20 chrX 18297400 18297648 -158676492 + L1MC4a LINE L1 5665 5786 -376 349 283 92 13 chrX 18297921 18298073 -158676067 - MLT1J2 LTR MaLR -17 433 270 331 296 107 12 chrX 18298113 18298289 -158675851 - MLT1I LTR MaLR -209 200 1 1907 252 44 54 chrX 18298781 18299411 -158674729 + MLT1E2 LTR MaLR 3 626 0 1347 225 85 13 chrX 18300924 18301240 -158672900 + MSTD LTR MaLR 58 396 0 1656 169 30 10 chrX 18301578 18301873 -158672267 + AluJb SINE Alu 7 307 -5 200 293 0 0 chrX 18302104 18302162 -158671978 + L2 LINE L2 3214 3271 -1 2461 91 0 0 chrX 18302309 18302616 -158671524 - AluY SINE Alu -4 307 1 999 196 0 0 chrX 18307651 18307809 -158666331 + FRAM SINE Alu 2 159 -7 26 0 0 0 chrX 18308056 18308082 -158666058 + AT_rich Low_complexity Low_complexity 1 26 0 342 317 111 42 chrX 18308147 18308453 -158665687 - MLT1I LTR MaLR -49 360 34 2283 246 22 30 chrX 18309001 18309632 -158664508 + MLT1E2 LTR MaLR 1 626 0 243 332 124 20 chrX 18310540 18310742 -158663398 + MIR SINE MIR 40 262 0 1057 142 0 0 chrX 18311107 18311255 -158662885 + L1PA8A LINE L1 5966 6113 -18 180 233 128 23 chrX 18311639 18311725 -158662415 + L2 LINE L2 2880 2974 -339 218 287 23 58 chrX 18311823 18311910 -158662230 + L2 LINE L2 3187 3270 -2 1328 94 70 9 chrX 18314910 18315123 -158659017 - pTR5 LTR ERV1 -2041 397 172 363 220 11 0 chrX 18315126 18315217 -158658923 - LTR30 LTR ERV1 -80 642 551 3979 153 122 36 chrX 18315219 18316197 -158657943 - pTR5 LTR ERV1 -408 2030 741 799 204 11 27 chrX 18318183 18318369 -158655771 + AluJo SINE Alu 41 223 -89 189 0 0 0 chrX 18318402 18318423 -158655717 + (TAA)n Simple_repeat Simple_repeat 2 22 0 207 88 0 0 chrX 18318626 18318660 -158655480 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 838 231 116 91 chrX 18318941 18319758 -158654382 - L1MC5 LINE L1 -34 7927 7090 360 263 125 13 chrX 18319882 18320114 -158654026 - L1M4 LINE L1 -2923 3223 2966 584 329 90 46 chrX 18320442 18320922 -158653218 - LTR33A LTR ERVL -20 503 3 554 231 208 11 chrX 18320954 18321214 -158652926 + L1ME1 LINE L1 3880 4190 -1956 * 2976 235 63 11 chrX 18321198 18321592 -158652548 + L1ME1 LINE L1 4526 4898 -1268 188 86 29 0 chrX 18321592 18321627 -158652513 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 2976 235 63 11 chrX 18321627 18322752 -158651388 + L1ME1 LINE L1 4898 6120 -46 267 235 41 100 chrX 18322786 18322956 -158651184 + L1ME2 LINE L1 5928 6087 -77 4829 41 0 0 chrX 18323160 18323741 -158650399 - L1PA4 LINE L1 -2 6153 5573 2773 54 92 0 chrX 18323741 18324110 -158650030 - L1P LINE L1 -5742 404 2 1214 80 0 0 chrX 18324457 18324607 -158649533 + AluSg1 SINE Alu 1 150 -159 1287 173 0 30 chrX 18324620 18324851 -158649289 - AluJo SINE Alu -76 236 13 1076 172 19 184 chrX 18325218 18325630 -158648510 - LTR40b LTR ERVL 0 462 119 2600 44 0 0 chrX 18325752 18326071 -158648069 - L1PA4 LINE L1 -3 6152 5834 26 0 0 0 chrX 18326308 18326334 -158647806 + AT_rich Low_complexity Low_complexity 1 26 0 1670 106 0 0 chrX 18327585 18327802 -158646338 + AluSg/x SINE Alu 72 288 -22 32 0 0 0 chrX 18327807 18327839 -158646301 + AT_rich Low_complexity Low_complexity 1 32 0 221 297 95 14 chrX 18328086 18328160 -158645980 + L2 LINE L2 3189 3268 -4 21 36 0 0 chrX 18329627 18329655 -158644485 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrX 18329753 18329795 -158644345 + AT_rich Low_complexity Low_complexity 1 42 0 42 36 0 0 chrX 18329823 18329879 -158644261 + AT_rich Low_complexity Low_complexity 1 56 0 1345 99 0 0 chrX 18329879 18330050 -158644090 - AluSg/x SINE Alu -27 285 115 712 176 15 0 chrX 18330051 18330182 -158643958 - FLAM_A SINE Alu 0 133 1 624 177 0 32 chrX 18330424 18330548 -158643592 - L1ME3A LINE L1 -6 6147 6028 251 294 34 34 chrX 18330612 18330731 -158643409 - L1ME3A LINE L1 -137 6016 5898 355 285 0 9 chrX 18330749 18330907 -158643233 - L1ME3A LINE L1 -758 5371 5217 867 299 42 3 chrX 18330973 18331328 -158642812 - L1ME3A LINE L1 -1038 5091 4723 1367 251 64 108 chrX 18331414 18332574 -158641566 - L1ME3A LINE L1 -1990 4139 2929 2359 97 0 3 chrX 18332574 18332884 -158641256 - AluSg SINE Alu -1 309 1 1367 251 64 108 chrX 18332884 18333433 -158640707 - L1ME3A LINE L1 -3200 2929 2531 2122 106 3 0 chrX 18333433 18333748 -158640392 - AluSx SINE Alu 0 317 2 1367 251 64 108 chrX 18333748 18334073 -158640067 - L1ME3A LINE L1 -3598 2531 2193 332 267 70 32 chrX 18334160 18334347 -158639793 - L1ME3A LINE L1 -4179 2131 1938 580 288 104 49 chrX 18334460 18335487 -158638653 - L1MEd LINE L1 -4567 1562 487 21 0 0 0 chrX 18336678 18336699 -158637441 + AT_rich Low_complexity Low_complexity 1 21 0 719 287 74 46 chrX 18338003 18338435 -158635705 - LTR33A LTR ERVL 0 523 80 23 0 0 0 chrX 18338595 18338618 -158635522 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 18338726 18338748 -158635392 + AT_rich Low_complexity Low_complexity 1 22 0 560 298 96 71 chrX 18338757 18339166 -158634974 + L1ME LINE L1 3914 4311 -1835 2165 77 37 27 chrX 18339166 18339465 -158634675 + AluSx SINE Alu 1 302 -10 560 298 96 71 chrX 18339465 18339858 -158634282 + L1ME LINE L1 4311 4736 -1410 415 276 32 94 chrX 18340656 18341029 -158633111 + HAL1 LINE L1 813 1162 -1345 331 295 101 41 chrX 18341063 18341429 -158632711 + HAL1 LINE L1 1265 1652 -855 21 36 0 0 chrX 18342166 18342194 -158631946 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chrX 18342589 18342624 -158631516 + AT_rich Low_complexity Low_complexity 1 35 0 241 242 66 11 chrX 18342809 18342900 -158631240 - L1MA9 LINE L1 0 6312 6217 390 321 53 34 chrX 18343194 18343456 -158630684 + L1ME LINE L1 5512 5778 -343 180 0 0 0 chrX 18343474 18343494 -158630646 + (A)n Simple_repeat Simple_repeat 1 20 0 694 193 167 66 chrX 18345169 18345397 -158628743 - MIR SINE MIR -1 261 11 27 49 0 0 chrX 18345939 18345980 -158628160 + AT_rich Low_complexity Low_complexity 1 41 0 256 247 53 105 chrX 18346853 18347043 -158627097 + HsTC2 DNA Tc2 94 273 -1625 24 67 0 0 chrX 18347063 18347108 -158627032 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chrX 18347247 18347275 -158626865 + AT_rich Low_complexity Low_complexity 1 28 0 524 304 129 38 chrX 18347442 18347921 -158626219 + L2 LINE L2 2738 3311 -2 333 203 0 0 chrX 18348933 18348992 -158625148 + MER69 DNA AcHobo 1 59 -2467 288 0 0 0 chrX 18349132 18349164 -158624976 + (CA)n Simple_repeat Simple_repeat 2 33 0 323 235 20 31 chrX 18349170 18349268 -158624872 + MER69 DNA AcHobo 2430 2526 0 325 213 27 120 chrX 18349609 18349759 -158624381 - L1MB8 LINE L1 -8 6170 6035 22 56 0 0 chrX 18349783 18349819 -158624321 + AT_rich Low_complexity Low_complexity 1 36 0 273 368 7 35 chrX 18349871 18350015 -158624125 + L2 LINE L2 1868 2007 -1307 333 308 14 14 chrX 18350298 18350441 -158623699 + MLT1J LTR MaLR 324 466 -45 204 40 0 0 chrX 18350849 18350874 -158623266 + (TC)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chrX 18352503 18352525 -158621615 + AT_rich Low_complexity Low_complexity 1 22 0 541 266 79 23 chrX 18353600 18353777 -158620363 - MLT1J2 LTR MaLR -263 187 1 1839 225 74 50 chrX 18354159 18354684 -158619456 + MLT1F1 LTR MaLR 1 563 -4 533 302 54 61 chrX 18354912 18355336 -158618804 + L1M4 LINE L1 2880 3300 -2846 249 332 32 28 chrX 18355341 18355591 -158618549 + L1M4 LINE L1 4039 4289 -1857 1936 136 0 26 chrX 18356305 18356615 -158617525 - AluJo SINE Alu -10 302 1 647 326 120 22 chrX 18356669 18357221 -158616919 + L2 LINE L2 1272 1877 -1437 3636 211 109 73 chrX 18357703 18358268 -158615872 - L1MC3 LINE L1 -22 7763 7220 396 203 0 25 chrX 18358268 18358347 -158615793 - MLT1F1 LTR MaLR -456 111 35 3636 211 109 73 chrX 18358347 18358854 -158615286 - L1MC3 LINE L1 -565 7220 6571 403 92 59 8 chrX 18358900 18359019 -158615121 + (TA)n Simple_repeat Simple_repeat 2 126 0 1509 171 9 73 chrX 18359019 18359347 -158614793 + LTR1 LTR ERV1 479 785 0 1821 234 22 33 chrX 18359347 18359898 -158614242 - L1MC3 LINE L1 -1210 6575 6031 309 19 75 0 chrX 18360363 18360416 -158613724 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 39907 58 4 7 chrX 18360416 18366564 -158607576 - L1PA5 LINE L1 -13 6141 12 8404 144 10 8 chrX 18367418 18368888 -158605252 - Tigger1 DNA MER2_type -3 2415 942 2484 159 19 7 chrX 18368892 18369313 -158604827 + MSTB LTR MaLR 1 426 0 1818 109 39 0 chrX 18369327 18369584 -158604556 + AluSg SINE Alu 5 271 -39 324 70 0 0 chrX 18369585 18369628 -158604512 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 8224 182 35 8 chrX 18369632 18371227 -158602913 + MSTB-int LTR MaLR 1 1638 -13 2129 173 29 26 chrX 18371243 18371664 -158602476 + MSTB LTR MaLR 5 426 0 4275 131 22 8 chrX 18371664 18372382 -158601758 - Tigger1 DNA MER2_type -1476 942 215 1244 164 80 27 chrX 18372386 18372649 -158601491 + AluJo SINE Alu 21 297 -15 1177 153 18 26 chrX 18372649 18372878 -158601262 - Tigger1 DNA MER2_type -2190 228 2 246 116 0 0 chrX 18372897 18372940 -158601200 + (GA)n Simple_repeat Simple_repeat 1 43 0 2208 95 0 22 chrX 18373175 18373492 -158600648 - AluSg SINE Alu 0 310 1 462 36 0 0 chrX 18373841 18373897 -158600243 + (TG)n Simple_repeat Simple_repeat 2 57 0 1539 241 94 74 chrX 18374002 18374650 -158599490 - MLT2F LTR ERVL 0 663 3 21 36 0 0 chrX 18375204 18375232 -158598908 + AT_rich Low_complexity Low_complexity 1 28 0 265 275 0 12 chrX 18376141 18376221 -158597919 + GA-rich Low_complexity Low_complexity 2 80 0 603 168 0 0 chrX 18377814 18377933 -158596207 + CT-rich Low_complexity Low_complexity 2 120 0 749 174 22 16 chrX 18378833 18379017 -158595123 - MER53 DNA DNA 0 189 5 372 238 155 33 chrX 18379566 18379747 -158594393 + L1ME3A LINE L1 5679 5881 -289 1738 188 38 5 chrX 18380147 18380515 -158593625 - MSTB LTR MaLR 0 426 47 21 0 0 0 chrX 18380559 18380580 -158593560 + AT_rich Low_complexity Low_complexity 1 21 0 2040 130 3 3 chrX 18381117 18381451 -158592689 + AluSx SINE Alu 1 334 0 2058 128 10 0 chrX 18381455 18381753 -158592387 + AluSx SINE Alu 1 301 -11 915 182 0 35 chrX 18381890 18382083 -158592057 + AluJb SINE Alu 129 312 0 2130 102 0 3 chrX 18382581 18382866 -158591274 - AluSx SINE Alu -28 284 1 24 32 0 0 chrX 18383153 18383184 -158590956 + AT_rich Low_complexity Low_complexity 1 31 0 314 130 19 0 chrX 18383844 18383898 -158590242 - MSTB LTR MaLR -377 55 1 1174 308 53 35 chrX 18384117 18384933 -158589207 - L2 LINE L2 0 3313 2481 3165 306 95 19 chrX 18385330 18386770 -158587370 - L2 LINE L2 -838 2476 927 249 361 0 0 chrX 18387197 18387258 -158586882 - L2 LINE L2 -94 3178 3118 2442 181 31 2 chrX 18387904 18388412 -158585728 - Charlie1b DNA MER1_type 0 523 1 243 324 65 14 chrX 18388639 18388778 -158585362 + L2 LINE L2 3167 3312 -1 22 56 0 0 chrX 18389231 18389267 -158584873 + AT_rich Low_complexity Low_complexity 1 36 0 1712 195 3 8 chrX 18390889 18391264 -158582876 - L1 LINE L1 -1930 4216 3844 * 3021 196 35 78 chrX 18391263 18391996 -158582144 + L1MA6 LINE L1 4793 5557 -743 2274 84 3 0 chrX 18391996 18392283 -158581857 + AluY SINE Alu 1 288 -23 3021 196 35 78 chrX 18392283 18392635 -158581505 + L1MA6 LINE L1 5557 5794 -506 291 54 0 0 chrX 18392635 18392672 -158581468 + (CA)n Simple_repeat Simple_repeat 2 38 0 3021 196 35 78 chrX 18392672 18393134 -158581006 + L1MA6 LINE L1 5794 6275 -25 427 261 8 157 chrX 18393155 18393423 -158580717 + MIR SINE MIR 35 262 0 1117 218 102 72 chrX 18393433 18393726 -158580414 + MLT1A2 LTR MaLR 1 309 -65 1710 106 50 90 chrX 18393726 18394047 -158580093 - AluSx SINE Alu -4 308 1 1117 218 102 72 chrX 18394047 18394116 -158580024 + MLT1A2 LTR MaLR 309 374 0 21 0 0 0 chrX 18394331 18394352 -158579788 + AT_rich Low_complexity Low_complexity 1 21 0 2106 97 3 10 chrX 18394443 18394732 -158579408 + AluSq SINE Alu 12 298 -15 798 94 39 0 chrX 18394739 18394899 -158579241 + L1MB1 LINE L1 6033 6197 0 1898 192 11 3 chrX 18395313 18395673 -158578467 + MLT1A1 LTR MaLR 1 363 -2 597 248 4 62 chrX 18395683 18395909 -158578231 + L1ME1 LINE L1 5947 6159 -7 615 313 132 57 chrX 18396163 18396680 -158577460 - L2 LINE L2 -4 3309 2755 234 0 0 0 chrX 18396810 18396836 -158577304 + (CAA)n Simple_repeat Simple_repeat 2 27 0 749 216 92 80 chrX 18397168 18397691 -158576449 + L1ME3A LINE L1 4322 4850 -1296 306 272 160 16 chrX 18397723 18397848 -158576292 + L1ME3A LINE L1 5049 5191 -955 1665 254 75 13 chrX 18397930 18398679 -158575461 + L1ME3A LINE L1 5319 6123 -39 271 227 171 0 chrX 18398729 18398817 -158575323 + MIR SINE MIR 155 257 -5 28 61 0 0 chrX 18399271 18399320 -158574820 + AT_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chrX 18399407 18399434 -158574706 + AT_rich Low_complexity Low_complexity 1 27 0 24 91 0 0 chrX 18399558 18399624 -158574516 + AT_rich Low_complexity Low_complexity 1 66 0 22 35 0 0 chrX 18400048 18400077 -158574063 + AT_rich Low_complexity Low_complexity 1 29 0 1270 271 62 25 chrX 18401151 18401797 -158572343 - L1MC4a LINE L1 -1874 5934 5265 235 275 12 0 chrX 18401965 18402045 -158572095 - L1MC4a LINE L1 -1563 4583 4503 456 330 74 26 chrX 18402082 18402433 -158571707 - L1MC4a LINE L1 -1712 4434 4067 1329 206 41 46 chrX 18402506 18402874 -158571266 + MER47A DNA MER2_type 1 366 0 372 318 84 43 chrX 18403059 18403500 -158570640 - L1MC4a LINE L1 -2441 3705 3247 1855 259 61 54 chrX 18403913 18404479 -158569661 + L1ME1 LINE L1 4106 4666 -1480 2560 34 0 0 chrX 18404479 18404776 -158569364 + AluYb8 SINE Alu 1 297 -21 1855 259 61 54 chrX 18404776 18405401 -158568739 + L1ME1 LINE L1 4666 5306 -840 2096 122 17 0 chrX 18405407 18405703 -158568437 + AluSx SINE Alu 1 301 -11 2198 241 98 4 chrX 18405817 18406121 -158568019 + L1ME1 LINE L1 5365 5639 -527 1461 229 5 111 chrX 18406121 18406698 -158567442 - MLT2B1 LTR ERVL 0 520 5 2198 241 98 4 chrX 18406698 18407118 -158567022 + L1ME1 LINE L1 5639 6157 -9 6524 83 10 0 chrX 18407390 18408417 -158565723 + L1PA10 LINE L1 5118 6158 -10 543 249 224 10 chrX 18409495 18409700 -158564440 - MIR SINE MIR -13 249 1 2233 44 91 0 chrX 18409765 18410040 -158564100 - AluY SINE Alu -11 300 1 30 0 0 0 chrX 18410225 18410255 -158563885 + AT_rich Low_complexity Low_complexity 1 30 0 480 350 42 21 chrX 18411049 18411289 -158562851 + L2 LINE L2 1376 1620 -1694 516 232 27 0 chrX 18411295 18411407 -158562733 + MER58A DNA MER1_type 1 115 0 318 190 0 0 chrX 18411426 18411484 -158562656 + MER58A DNA MER1_type 162 219 -5 1360 302 99 36 chrX 18411489 18412188 -158561952 + L2 LINE L2 1620 2362 -952 385 316 72 34 chrX 18412308 18412571 -158561569 + L1ME LINE L1 6 278 -5792 532 298 72 52 chrX 18412650 18412955 -158561185 + L1ME LINE L1 410 720 -5350 1523 261 45 4 chrX 18412993 18413499 -158560641 + L1M4 LINE L1 3187 3713 -2433 474 196 80 0 chrX 18413542 18413654 -158560486 - L1MA9 LINE L1 -38 6274 6154 381 43 0 0 chrX 18413725 18413772 -158560368 + (CA)n Simple_repeat Simple_repeat 2 48 0 689 183 15 0 chrX 18413782 18413913 -158560227 + L1MA9 LINE L1 5796 5928 -384 262 266 19 52 chrX 18413937 18414091 -158560049 + L1M4 LINE L1 3756 3904 -2242 261 0 0 0 chrX 18414110 18414145 -158559995 - L1MA3 LINE L1 0 6305 6271 1419 243 90 25 chrX 18414149 18415347 -158558793 + L1M4 LINE L1 3896 5213 -933 495 198 124 83 chrX 18415447 18415658 -158558482 + MLT1E2 LTR MaLR 64 272 -354 2224 80 13 13 chrX 18415930 18416232 -158557908 + AluSp SINE Alu 1 302 -11 446 163 116 12 chrX 18416661 18416747 -158557393 - 5S rRNA rRNA -25 96 2 2462 118 41 3 chrX 18416749 18417139 -158557001 + L1PA16 LINE L1 5752 6156 -10 5123 138 21 7 chrX 18417843 18418699 -158555441 - L1MB8 LINE L1 0 6178 5311 4059 172 45 9 chrX 18418710 18420335 -158553805 + L1PA13 LINE L1 4530 6158 -5 2005 214 44 8 chrX 18420365 18420846 -158553294 - L1MA9 LINE L1 -38 6274 5777 230 316 0 0 chrX 18420828 18420907 -158553233 - L1MC4 LINE L1 -1342 6700 6622 * 241 349 0 0 chrX 18420911 18420974 -158553166 + (TG)n Simple_repeat Simple_repeat 1 63 0 426 169 0 1 chrX 18420974 18421062 -158553078 + L1P5 LINE L1 5682 5768 -383 8501 219 40 39 chrX 18421100 18423839 -158550301 - L1M4 LINE L1 -841 5305 2563 180 0 0 0 chrX 18425101 18425121 -158549019 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 1428 179 7 29 chrX 18425129 18425402 -158548738 - AluJo SINE Alu -45 267 1 729 339 96 18 chrX 18425510 18426191 -158547949 + L2 LINE L2 2556 3308 -5 196 250 0 88 chrX 18426262 18426330 -158547810 + MIR SINE MIR 195 256 -6 25 31 0 0 chrX 18427120 18427152 -158546988 + AT_rich Low_complexity Low_complexity 1 32 0 192 145 32 32 chrX 18427260 18427322 -158546818 + CT-rich Low_complexity Low_complexity 2 63 0 972 77 26 7 chrX 18428795 18428950 -158545190 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 1911 130 0 18 chrX 18428952 18429237 -158544903 - AluSx SINE Alu -32 280 1 433 310 32 7 chrX 18429552 18429707 -158544433 - MIR SINE MIR -97 165 7 228 234 86 132 chrX 18429909 18430106 -158544034 - MIR3 SINE MIR -5 203 16 22 0 0 0 chrX 18430761 18430783 -158543357 + AT_rich Low_complexity Low_complexity 1 22 0 5072 114 16 1 chrX 18430783 18431529 -158542611 - L1PA16 LINE L1 -9 6157 5401 21 36 0 0 chrX 18431574 18431602 -158542538 + AT_rich Low_complexity Low_complexity 1 28 0 955 225 14 14 chrX 18432207 18432425 -158541715 - MER20 DNA MER1_type 0 219 2 291 350 79 17 chrX 18433342 18433519 -158540621 + MIR SINE MIR 19 206 -56 197 346 75 23 chrX 18434376 18434509 -158539631 - L2 LINE L2 -410 2904 2765 21 0 0 0 chrX 18434929 18434950 -158539190 + AT_rich Low_complexity Low_complexity 1 21 0 489 228 98 62 chrX 18435247 18435440 -158538700 + L2 LINE L2 3114 3313 0 356 331 37 55 chrX 18435476 18435605 -158538535 - L1MC4a LINE L1 -1982 5826 5696 2147 87 3 7 chrX 18435605 18435892 -158538248 + AluSx SINE Alu 1 286 -26 267 31 0 0 chrX 18435892 18435924 -158538216 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 356 331 37 55 chrX 18435924 18436065 -158538075 - L1MC4a LINE L1 -2110 5698 5560 217 324 15 0 chrX 18436172 18436240 -158537900 + MIR SINE MIR 96 164 -98 252 340 65 20 chrX 18436755 18436908 -158537232 + MIR3 SINE MIR 38 197 -11 1369 179 107 0 chrX 18437315 18437578 -158536562 - AluJo SINE Alu -21 291 1 5666 151 16 15 chrX 18437930 18438051 -158536089 - L1MA4 LINE L1 -1 6299 6180 2171 148 15 0 chrX 18438051 18438383 -158535757 + MER1B DNA MER1_type 1 337 0 5666 151 16 15 chrX 18438383 18439732 -158534408 - L1MA4 LINE L1 -120 6180 4828 577 15 0 0 chrX 18440541 18440646 -158533494 + AluY SINE Alu 216 320 0 406 277 216 28 chrX 18440834 18441047 -158533093 - MIR SINE MIR 0 262 10 553 254 92 25 chrX 18441256 18441496 -158532644 - MLT1F LTR MaLR -4 538 283 283 198 73 31 chrX 18441694 18441790 -158532350 - HAL1 LINE L1 -467 2040 1941 732 263 93 48 chrX 18441818 18442335 -158531805 - HAL1 LINE L1 -1048 1459 920 378 331 12 45 chrX 18442411 18442653 -158531487 + L2 LINE L2 3080 3313 0 442 382 65 10 chrX 18443462 18443847 -158530293 + L3 LINE CR1 668 1073 -504 1734 127 0 0 chrX 18443871 18444108 -158530032 - AluSx SINE Alu -13 299 63 422 299 140 62 chrX 18444168 18444633 -158529507 + MLT1J LTR MaLR 11 511 0 212 350 81 19 chrX 18444637 18444797 -158529343 + L3 LINE CR1 1140 1309 -268 1724 143 51 0 chrX 18444897 18445212 -158528928 + L1M2 LINE L1 2559 2889 -3960 186 43 0 0 chrX 18445383 18445406 -158528734 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 361 242 144 92 chrX 18445548 18445854 -158528286 - LTR33A LTR ERVL -199 324 3 22 56 0 0 chrX 18445960 18445996 -158528144 + AT_rich Low_complexity Low_complexity 1 36 0 228 171 24 0 chrX 18446633 18446674 -158527466 + MER3 DNA MER1_type 1 42 -167 946 135 0 0 chrX 18446686 18446842 -158527298 - L1MA10 LINE L1 -1 6333 6178 468 51 0 0 chrX 18446884 18446943 -158527197 + (TG)n Simple_repeat Simple_repeat 2 60 0 2051 124 0 0 chrX 18446960 18447242 -158526898 + AluSc SINE Alu 1 282 -27 276 149 0 0 chrX 18447242 18447289 -158526851 + AluSc SINE Alu 249 295 -4 1149 129 43 17 chrX 18447290 18447522 -158526618 - L1MB1 LINE L1 -15 6153 5916 1694 57 0 3 chrX 18447648 18447928 -158526212 - MLT2A1 LTR ERVL -93 351 1 203 159 45 0 chrX 18450455 18450499 -158523641 + T-rich Low_complexity Low_complexity 2 47 0 694 286 58 46 chrX 18450500 18450829 -158523311 - MLT1I LTR MaLR -50 359 27 339 113 0 0 chrX 18451030 18451083 -158523057 + (TG)n Simple_repeat Simple_repeat 2 54 0 38 22 0 0 chrX 18452724 18452769 -158521371 + AT_rich Low_complexity Low_complexity 1 45 0 2414 76 0 3 chrX 18452984 18453287 -158520853 + AluY SINE Alu 2 303 -8 7162 176 15 44 chrX 18453466 18455858 -158518282 + L1PA16 LINE L1 3622 5929 -237 275 247 0 78 chrX 18455861 18455938 -158518202 + MER5B DNA MER1_type 102 172 -6 10950 127 18 8 chrX 18456379 18458410 -158515730 - L1P4 LINE L1 -502 5666 3609 2233 97 0 10 chrX 18458410 18458710 -158515430 + AluSc SINE Alu 4 300 -9 10950 127 18 8 chrX 18458710 18458782 -158515358 - L1P4 LINE L1 -2559 3609 3539 454 234 7 35 chrX 18458819 18458960 -158515180 - L1MEd LINE L1 -5944 175 39 398 274 56 138 chrX 18459064 18459491 -158514649 - L2 LINE L2 0 3313 2922 828 160 13 6 chrX 18460025 18460198 -158513942 + L1M2 LINE L1 5290 5467 -699 4509 148 12 12 chrX 18460298 18461691 -158512449 - L1PA15 LINE L1 -258 5907 4512 441 300 47 11 chrX 18461691 18461881 -158512259 + LTR33A LTR ERVL 325 521 -2 314 365 62 10 chrX 18461939 18462147 -158511993 + MIR SINE MIR 34 252 -10 21 0 0 0 chrX 18462598 18462619 -158511521 + AT_rich Low_complexity Low_complexity 1 21 0 327 344 47 42 chrX 18463113 18463305 -158510835 - L1ME3A LINE L1 -1 6169 5977 602 261 39 125 chrX 18463383 18463622 -158510518 - L1ME3A LINE L1 -226 5944 5686 2208 48 0 7 chrX 18463622 18463892 -158510248 - AluY SINE Alu -6 305 38 602 261 39 125 chrX 18463892 18464055 -158510085 - L1ME3A LINE L1 -484 5686 5511 1694 188 7 3 chrX 18464055 18464358 -158509782 - AluJb SINE Alu -5 307 4 602 261 39 125 chrX 18464358 18464627 -158509513 - L1ME3A LINE L1 -659 5511 5306 3918 201 50 22 chrX 18464747 18465746 -158508394 - L1MB3 LINE L1 -46 7097 6054 798 266 44 57 chrX 18465725 18466113 -158508027 - L1MC/D LINE L1 -2127 6641 6259 * 368 278 45 0 chrX 18466449 18466582 -158507558 - L1MB3 LINE L1 -1063 6043 5905 471 135 0 39 chrX 18466582 18466686 -158507454 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 3478 191 28 3 chrX 18466690 18467433 -158506707 - L1MB3 LINE L1 -1198 5908 5147 1929 205 12 2 chrX 18467446 18467860 -158506280 + L1 LINE L1 3394 3811 -2335 2042 172 0 22 chrX 18467861 18468221 -158505919 - MLT1A1 LTR MaLR -2 363 12 1881 200 0 5 chrX 18468231 18468606 -158505534 + L1 LINE L1 3806 4178 -1968 768 209 6 34 chrX 18468611 18468788 -158505352 + MER3 DNA MER1_type 38 209 0 397 207 0 0 chrX 18468976 18469063 -158505077 - L1MB3 LINE L1 -3106 4000 3914 * 1656 202 109 30 chrX 18469062 18469503 -158504637 - L1MB3 LINE L1 -6554 476 1 1133 229 58 99 chrX 18469508 18470165 -158503975 + L2 LINE L2 2686 3304 -9 241 192 0 19 chrX 18470195 18470247 -158503893 + (TATATG)n Simple_repeat Simple_repeat 5 55 0 194 380 89 21 chrX 18470692 18471221 -158502919 - L3 LINE CR1 -383 1194 630 259 329 0 0 chrX 18471295 18471374 -158502766 + L2 LINE L2 2569 2647 -667 360 328 17 0 chrX 18471460 18471579 -158502561 + L2 LINE L2 2941 3061 -211 733 261 71 0 chrX 18471584 18471768 -158502372 + MIR SINE MIR 2 198 -64 2289 122 26 3 chrX 18471773 18472117 -158502023 + MER46B DNA MER2_type 6 232 -4 243 0 0 0 chrX 18472128 18472155 -158501985 + (CA)n Simple_repeat Simple_repeat 2 28 0 231 36 0 0 chrX 18472160 18472188 -158501952 + (GA)n Simple_repeat Simple_repeat 2 29 0 252 250 0 0 chrX 18472190 18472242 -158501898 + MIR SINE MIR 210 261 -1 405 0 0 0 chrX 18472957 18473002 -158501138 + (TG)n Simple_repeat Simple_repeat 1 45 0 2190 74 0 18 chrX 18473002 18473287 -158500853 - AluSq SINE Alu -33 280 1 24 32 0 0 chrX 18473473 18473504 -158500636 + AT_rich Low_complexity Low_complexity 1 31 0 279 313 15 30 chrX 18474279 18474413 -158499727 + MLT1K LTR MaLR 427 558 -30 22 70 0 0 chrX 18474848 18474891 -158499249 + AT_rich Low_complexity Low_complexity 1 43 0 1466 268 102 7 chrX 18475090 18475511 -158498629 - LTR16B LTR ERVL -3 461 1 880 198 16 32 chrX 18475948 18476135 -158498005 - MER5A DNA MER1_type -2 187 4 3489 77 24 16 chrX 18476249 18476757 -158497383 + L1MA1 LINE L1 5782 6293 -9 27 62 0 0 chrX 18476843 18476891 -158497249 + AT_rich Low_complexity Low_complexity 1 48 0 23 0 0 0 chrX 18477088 18477111 -158497029 + AT_rich Low_complexity Low_complexity 1 23 0 1198 58 13 0 chrX 18477111 18477267 -158496873 - L1PA5 LINE L1 -2 6152 5995 1149 23 0 0 chrX 18477268 18477400 -158496740 + L1PA5 LINE L1 5822 5953 -201 2208 208 66 55 chrX 18477428 18478077 -158496063 - L1ME1 LINE L1 -169 6066 5411 1373 258 71 9 chrX 18478078 18478602 -158495538 - L1ME1 LINE L1 -4329 2067 1512 2331 106 3 0 chrX 18478605 18478942 -158495198 - AluSq SINE Alu 0 338 1 2297 78 0 26 chrX 18479057 18479363 -158494777 - AluY SINE Alu -13 298 1 1195 296 18 24 chrX 18479410 18479863 -158494277 - L1ME1 LINE L1 -5698 698 249 313 263 52 113 chrX 18480526 18480739 -158493401 - LTR16A1 LTR ERVL -113 344 145 1756 194 0 3 chrX 18482157 18482467 -158491673 + AluJo SINE Alu 1 309 -3 22 0 0 0 chrX 18482542 18482564 -158491576 + AT_rich Low_complexity Low_complexity 1 22 0 182 322 102 0 chrX 18482612 18482671 -158491469 - MIR3 SINE MIR -36 172 108 237 33 0 0 chrX 18483187 18483217 -158490923 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chrX 18483917 18483938 -158490202 + AT_rich Low_complexity Low_complexity 1 21 0 1088 366 57 17 chrX 18484459 18485167 -158488973 + ERVL LTR ERVL 3002 3706 -1779 497 380 68 47 chrX 18485240 18485555 -158488585 + L2 LINE L2 1972 2279 -1035 3103 152 30 23 chrX 18485555 18486154 -158487986 - L1MB3 LINE L1 -2 6181 5579 497 380 68 47 chrX 18486154 18486515 -158487625 + L2 LINE L2 2279 2662 -652 335 209 48 29 chrX 18486551 18486656 -158487484 - HERV16 LTR ERVL -3223 2541 2435 266 356 139 9 chrX 18486656 18486886 -158487254 + L2 LINE L2 2707 2966 -348 300 292 62 56 chrX 18487011 18487206 -158486934 + L2 LINE L2 3118 3313 0 299 353 25 14 chrX 18487572 18487883 -158486257 - HERV16 LTR ERVL -2389 2607 2311 183 204 0 0 chrX 18487978 18488027 -158486113 + (CATA)n Simple_repeat Simple_repeat 4 52 0 251 318 0 71 chrX 18488440 18488566 -158485574 - HERV16 LTR ERVL -4035 1619 1503 330 218 165 68 chrX 18490204 18490337 -158483803 - MIR SINE MIR -114 148 3 741 265 10 25 chrX 18490489 18490685 -158483455 + MIR SINE MIR 40 232 -30 238 259 111 0 chrX 18490693 18490774 -158483366 - L1MC4 LINE L1 -1339 6703 6614 2265 111 0 0 chrX 18490896 18491194 -158482946 - AluSx SINE Alu -12 300 3 25 65 0 0 chrX 18491250 18491296 -158482844 + AT_rich Low_complexity Low_complexity 1 46 0 237 83 0 0 chrX 18491338 18491374 -158482766 + (TG)n Simple_repeat Simple_repeat 1 36 0 291 266 133 27 chrX 18492600 18492788 -158481352 - MLT1K LTR MaLR 0 588 381 2070 174 60 19 chrX 18493402 18493817 -158480323 - MSTB1 LTR MaLR 0 432 1 219 103 0 0 chrX 18494224 18494263 -158479877 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4551 39 4 0 chrX 18494393 18494976 -158479164 + L1PA5 LINE L1 5600 6184 0 398 280 70 91 chrX 18495424 18495468 -158478672 + LTR16C LTR ERVL 82 125 -366 2148 71 64 7 chrX 18495468 18495751 -158478389 - AluSx SINE Alu -13 299 1 398 280 70 91 chrX 18495751 18496035 -158478105 + LTR16C LTR ERVL 125 403 -88 500 261 149 37 chrX 18497350 18497511 -158476629 + MER5A DNA MER1_type 10 188 -1 14784 130 11 25 chrX 18498408 18500414 -158473726 - Tigger1 DNA MER2_type 0 2418 452 2027 131 0 39 chrX 18500414 18500726 -158473414 + AluSx SINE Alu 3 302 -10 14784 130 11 25 chrX 18500726 18501171 -158472969 - Tigger1 DNA MER2_type -1966 452 2 31 0 0 0 chrX 18501479 18501510 -158472630 + AT_rich Low_complexity Low_complexity 1 31 0 362 252 29 10 chrX 18501718 18501821 -158472319 + L1ME LINE L1 5617 5721 -400 22 35 0 0 chrX 18501900 18501929 -158472211 + AT_rich Low_complexity Low_complexity 1 29 0 3053 210 44 49 chrX 18502957 18504098 -158470042 + L1M2b LINE L1 1 1146 -6063 2287 103 0 3 chrX 18504098 18504398 -158469742 + AluSq SINE Alu 1 299 -14 3053 210 44 49 chrX 18504398 18504837 -158469303 + L1M2b LINE L1 1146 2471 -4738 198 277 27 80 chrX 18505537 18505649 -158468491 - MIR SINE MIR -71 191 86 21 71 0 0 chrX 18506550 18506592 -158467548 + AT_rich Low_complexity Low_complexity 1 42 0 272 358 21 0 chrX 18507003 18507098 -158467042 + MLT2F LTR ERVL 214 310 -353 417 220 22 0 chrX 18507127 18507218 -158466922 + MLT2F LTR ERVL 516 608 -55 258 95 0 0 chrX 18507221 18507263 -158466877 + (TC)n Simple_repeat Simple_repeat 1 42 0 595 103 9 9 chrX 18507560 18507667 -158466473 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 482 374 6 0 chrX 18507904 18508075 -158466065 + MER91A DNA MER1_type 12 183 -13 198 380 13 0 chrX 18508187 18508266 -158465874 - MIR SINE MIR -110 152 73 280 335 66 6 chrX 18509982 18510149 -158463991 + MLT1K LTR MaLR 378 554 -34 27 0 0 0 chrX 18510710 18510737 -158463403 + AT_rich Low_complexity Low_complexity 1 27 0 368 20 0 20 chrX 18511086 18511136 -158463004 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 29 47 0 0 chrX 18511261 18511304 -158462836 + AT_rich Low_complexity Low_complexity 1 43 0 568 315 5 12 chrX 18511547 18511737 -158462403 - HERVL LTR ERVL -1900 3096 3002 20759 53 1 2 chrX 18511756 18515193 -158458947 + L1PA6 LINE L1 2707 6137 -17 430 113 0 0 chrX 18515208 18515270 -158458870 - L1P LINE L1 -899 5247 5186 1430 314 36 6 chrX 18515556 18516060 -158458080 - HERVL LTR ERVL -2297 2699 2181 24 32 0 0 chrX 18516196 18516227 -158457913 + AT_rich Low_complexity Low_complexity 1 31 0 273 146 0 0 chrX 18516236 18516284 -158457856 + (CA)n Simple_repeat Simple_repeat 1 48 0 247 336 161 7 chrX 18517452 18517589 -158456551 + MIR SINE MIR 95 252 -10 26 50 0 0 chrX 18518230 18518270 -158455870 + AT_rich Low_complexity Low_complexity 1 40 0 2321 87 0 0 chrX 18519983 18520272 -158453868 + AluSx SINE Alu 1 289 -23 510 139 40 0 chrX 18520272 18520423 -158453717 + (TA)n Simple_repeat Simple_repeat 2 158 0 23 54 0 0 chrX 18521197 18521234 -158452906 + AT_rich Low_complexity Low_complexity 1 37 0 209 294 15 15 chrX 18522070 18522138 -158452002 - L2 LINE L2 0 3272 3205 290 266 101 18 chrX 18523502 18523611 -158450529 + Zaphod DNA AcHobo 9 126 -3905 290 182 141 79 chrX 18523611 18523902 -158450238 + Zaphod DNA AcHobo 700 1008 -3023 262 200 109 18 chrX 18523893 18524003 -158450137 + Zaphod DNA AcHobo 3610 3729 -302 * 2055 92 78 0 chrX 18524319 18524600 -158449540 + AluSp SINE Alu 1 303 -10 2203 121 0 0 chrX 18524939 18525236 -158448904 - AluSx SINE Alu -15 297 1 1524 142 0 0 chrX 18525496 18525715 -158448425 + AluJb SINE Alu 81 299 -13 355 275 41 102 chrX 18526467 18526929 -158447211 - L1ME3A LINE L1 -56 6114 5681 3887 170 10 44 chrX 18526980 18527812 -158446328 - L1ME1 LINE L1 -50 6236 5470 622 249 42 82 chrX 18527857 18528262 -158445878 - LTR15 LTR ERV1 0 493 105 26 64 0 0 chrX 18528598 18528645 -158445495 + AT_rich Low_complexity Low_complexity 1 47 0 1828 129 25 0 chrX 18530594 18530780 -158443360 - AluSx SINE Alu 0 315 117 243 0 0 0 chrX 18530780 18530807 -158443333 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1828 129 25 0 chrX 18530807 18530928 -158443212 - AluSx SINE Alu -198 117 1 310 303 166 42 chrX 18530944 18531228 -158442912 - L2 LINE L2 -44 3269 2951 * 1492 290 58 8 chrX 18531215 18531719 -158442421 - L2 LINE L2 -839 2475 1947 21 36 0 0 chrX 18531750 18531778 -158442362 + AT_rich Low_complexity Low_complexity 1 28 0 2379 126 55 36 chrX 18533139 18533555 -158440585 + L1MB3 LINE L1 5705 6132 -51 2354 91 3 0 chrX 18533555 18533851 -158440289 + AluSq SINE Alu 1 297 -16 2379 126 55 36 chrX 18533851 18533903 -158440237 + L1MB3 LINE L1 6132 6182 -1 2027 109 6 34 chrX 18533914 18534236 -158439904 + AluSq SINE Alu 1 313 0 187 281 8 107 chrX 18534916 18535037 -158439103 + MIR SINE MIR 98 206 -56 181 130 65 0 chrX 18535131 18535177 -158438963 + GA-rich Low_complexity Low_complexity 1 49 0 222 62 0 0 chrX 18535630 18535662 -158438478 + (TA)n Simple_repeat Simple_repeat 1 32 0 760 155 0 0 chrX 18535710 18535826 -158438314 + FLAM_C SINE Alu 1 116 -17 23 33 0 0 chrX 18537175 18537205 -158436935 + AT_rich Low_complexity Low_complexity 1 30 0 4243 127 57 0 chrX 18537964 18538636 -158435504 + L1PA16 LINE L1 5448 6157 -9 279 0 0 0 chrX 18538637 18538668 -158435472 + (TA)n Simple_repeat Simple_repeat 2 32 0 482 127 13 0 chrX 18540175 18540254 -158433886 - MADE1 DNA Mariner 0 80 1 500 240 16 8 chrX 18540358 18540479 -158433661 - L1ME LINE L1 -556 5614 5493 325 288 92 50 chrX 18540525 18540716 -158433424 - L2 LINE L2 -327 2986 2790 534 337 76 37 chrX 18540969 18541538 -158432602 - L2 LINE L2 -933 2381 1791 1026 238 19 0 chrX 18541626 18541840 -158432300 - MER20 DNA MER1_type 0 219 2 210 71 0 0 chrX 18542330 18542358 -158431782 + (TG)n Simple_repeat Simple_repeat 2 29 0 315 372 148 22 chrX 18542417 18542694 -158431446 - L2 LINE L2 -1899 1415 1104 1669 157 89 19 chrX 18542797 18543110 -158431030 - MER1B DNA MER1_type 0 337 3 2748 244 60 81 chrX 18543151 18544480 -158429660 + L1MD3 LINE L1 6667 7968 -27 230 160 40 0 chrX 18544544 18544594 -158429546 + L2 LINE L2 3262 3313 0 2025 116 17 3 chrX 18544770 18545064 -158429076 + AluSx SINE Alu 1 298 -14 1168 194 76 7 chrX 18545487 18545775 -158428365 + MER33 DNA MER1_type 1 308 -16 1411 193 33 95 chrX 18546515 18546991 -158427149 - Charlie1 DNA MER1_type -10 2751 2308 423 0 0 0 chrX 18546991 18547038 -158427102 + (TG)n Simple_repeat Simple_repeat 2 48 0 1411 193 33 95 chrX 18547038 18547079 -158427061 - Charlie1 DNA MER1_type -453 2308 2266 7259 142 9 9 chrX 18547079 18549079 -158425061 - L1PA10 LINE L1 -2 6166 4164 255 277 48 26 chrX 18550259 18550391 -158423749 - MIR SINE MIR -73 135 21 1856 250 46 49 chrX 18550451 18551104 -158423036 - MER69 DNA AcHobo -1423 1103 453 3741 138 63 78 chrX 18551148 18551945 -158422195 + LTR1 LTR ERV1 1 785 0 1458 265 58 14 chrX 18551945 18552380 -158421760 - MER69 DNA AcHobo -2071 455 1 1046 250 0 18 chrX 18552520 18552744 -158421396 + AluJo SINE Alu 1 220 -92 186 43 0 0 chrX 18552787 18552810 -158421330 + (GA)n Simple_repeat Simple_repeat 2 24 0 261 0 0 0 chrX 18553370 18553399 -158420741 + (TG)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chrX 18553398 18553420 -158420720 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 232 233 150 0 chrX 18554185 18554245 -158419895 - MLT1H1 LTR MaLR -281 274 206 1052 274 97 65 chrX 18554560 18555096 -158419044 - MLT1H1 LTR MaLR -2 553 1 310 298 73 48 chrX 18555387 18555635 -158418505 + L3b LINE CR1 1102 1355 -228 301 136 37 49 chrX 18556626 18556707 -158417433 - MER116 DNA Mariner 0 80 1 330 282 26 34 chrX 18556723 18556840 -158417300 - MIR SINE MIR -74 188 73 192 330 130 0 chrX 18557506 18557606 -158416534 + L2 LINE L2 3156 3268 -4 459 0 0 0 chrX 18557656 18557707 -158416433 + (TG)n Simple_repeat Simple_repeat 2 52 0 1876 26 18 0 chrX 18557751 18557977 -158416163 + L1PA4 LINE L1 5924 6153 -2 22 0 0 0 chrX 18558207 18558229 -158415911 + AT_rich Low_complexity Low_complexity 1 22 0 2474 185 42 18 chrX 18558466 18558658 -158415482 + LTR54 LTR ERV1 1 187 -323 377 135 52 31 chrX 18558658 18558754 -158415386 - L1MA4A LINE L1 -2 6301 6204 2474 185 42 18 chrX 18558754 18559059 -158415081 + LTR54 LTR ERV1 187 510 0 360 0 0 0 chrX 18559067 18559107 -158415033 + (TA)n Simple_repeat Simple_repeat 2 41 0 4118 230 29 16 chrX 18559123 18560285 -158413855 + L1 LINE L1 2344 3521 -2625 1894 189 57 115 chrX 18560287 18560984 -158413156 + MER61E LTR ERV1 1 779 0 2514 188 38 11 chrX 18560984 18561537 -158412603 + L1 LINE L1 3520 4087 -2059 420 66 0 6 chrX 18561537 18561597 -158412543 - MLT2A1 LTR ERVL 0 444 392 597 172 60 9 chrX 18561679 18561795 -158412345 + FLAM_C SINE Alu 5 126 -17 279 133 0 0 chrX 18562095 18562140 -158412000 + (TG)n Simple_repeat Simple_repeat 2 46 0 2651 97 13 8 chrX 18562261 18562634 -158411506 + THE1C LTR MaLR 1 375 0 21 36 0 0 chrX 18563414 18563442 -158410698 + AT_rich Low_complexity Low_complexity 1 28 0 845 314 76 7 chrX 18563733 18564153 -158409987 + LTR16A LTR ERVL 1 449 -1 709 231 17 97 chrX 18564154 18564392 -158409748 + HERV16 LTR ERVL 1 219 -4777 3619 182 53 14 chrX 18564443 18565234 -158408906 + L1MB8 LINE L1 5355 6176 -2 367 296 53 0 chrX 18565286 18565418 -158408722 + HERV16 LTR ERVL 262 400 -4596 * 2641 314 47 46 chrX 18565409 18566369 -158407771 + HERV16 LTR ERVL 2754 3805 -1959 2481 67 0 3 chrX 18566369 18566668 -158407472 - AluY SINE Alu -13 298 1 2641 314 47 46 chrX 18566668 18567430 -158406710 + HERV16 LTR ERVL 3805 4565 -1199 1017 138 117 11 chrX 18567430 18567618 -158406522 - MSTA LTR MaLR 0 428 221 628 143 0 10 chrX 18567622 18567720 -158406420 - MSTA LTR MaLR -331 97 1 1778 29 0 0 chrX 18567836 18568045 -158406095 + L1PA3 LINE L1 5947 6155 0 267 341 61 23 chrX 18568087 18568301 -158405839 + HERV16 LTR ERVL 4681 4902 -752 356 308 69 6 chrX 18568897 18569056 -158405084 + LTR16A LTR ERVL 103 271 -179 617 299 119 42 chrX 18570391 18571073 -158403067 - LTR41 LTR ERVL -25 748 15 465 257 121 14 chrX 18571089 18571229 -158402911 - HERV16 LTR ERVL -1467 4297 4143 709 351 78 33 chrX 18571304 18572248 -158401892 - HERV16 LTR ERVL -1494 3991 3005 588 312 9 23 chrX 18572245 18572460 -158401680 - HERV16 LTR ERVL -4474 522 311 * 574 193 143 0 chrX 18572464 18572604 -158401536 - MER58C DNA MER1_type 0 215 56 452 303 21 0 chrX 18572628 18572773 -158401367 - HERV16 LTR ERVL -4704 292 145 2132 216 54 13 chrX 18572773 18573459 -158400681 + L1MA6 LINE L1 3356 4124 -3441 * 3345 154 27 9 chrX 18573453 18575072 -158399068 + L1MA6 LINE L1 5636 7325 -394 2140 148 46 0 chrX 18575073 18575446 -158398694 - Tigger1 DNA MER2_type -1 2417 2028 * 2586 134 26 16 chrX 18575430 18575856 -158398284 - Tigger1 DNA MER2_type -1959 459 30 1703 161 0 0 chrX 18575871 18576157 -158397983 + L1MA6 LINE L1 7324 7609 -110 525 187 11 0 chrX 18576158 18576249 -158397891 + AluJ/FLAM SINE Alu 1 92 -220 642 120 46 0 chrX 18576277 18576385 -158397755 + L1MA6 LINE L1 7598 7710 -9 363 297 95 27 chrX 18576408 18576556 -158397584 - HERV16 LTR ERVL -4837 159 2 777 254 124 9 chrX 18576611 18576828 -158397312 - LTR16A LTR ERVL -105 345 104 366 197 18 26 chrX 18577686 18577786 -158396354 + LTR24B LTR ERV1 1 97 -368 716 277 44 44 chrX 18577825 18578190 -158395950 + LTR24B LTR ERV1 207 571 -5 1100 156 156 13 chrX 18578559 18578742 -158395398 - MSTA LTR MaLR -2 426 204 756 33 0 0 chrX 18578742 18578833 -158395307 + (GA)n Simple_repeat Simple_repeat 1 91 0 1100 156 156 13 chrX 18578833 18578873 -158395267 - MSTA LTR MaLR -224 204 171 1739 140 75 28 chrX 18578873 18579231 -158394909 + THE1C LTR MaLR 1 375 0 10085 122 47 6 chrX 18579231 18580749 -158393391 + THE1C-int LTR MaLR 1 1580 0 287 77 0 0 chrX 18580749 18580788 -158393352 + THE1C LTR MaLR 1 39 -389 * 1161 162 25 30 chrX 18580765 18581000 -158393140 + THE1C LTR MaLR 142 375 0 765 202 40 17 chrX 18581000 18581171 -158392969 - MSTA LTR MaLR -253 175 1 473 284 33 76 chrX 18581335 18581610 -158392530 + LTR16A1 LTR ERVL 107 369 -88 272 239 28 14 chrX 18582098 18582169 -158391971 + Charlie8 DNA MER1_type 29 100 -2317 2858 157 59 9 chrX 18582230 18582762 -158391378 - LTR49 LTR ERV1 -6 589 31 4010 107 14 87 chrX 18582762 18583138 -158391002 + MER39B LTR ERV1 1 403 -250 5935 114 1 22 chrX 18583138 18583847 -158390293 + L1PA16 LINE L1 4614 5336 -830 2515 7 0 0 chrX 18583847 18584120 -158390020 + AluYa5 SINE Alu 36 308 -3 5935 114 1 22 chrX 18584120 18584963 -158389177 + L1PA16 LINE L1 5336 6157 -9 4010 107 14 87 chrX 18584963 18584986 -158389154 + MER39B LTR ERV1 403 426 -227 2138 100 7 0 chrX 18584986 18585327 -158388813 + AluSp SINE Alu 1 343 0 4010 107 14 87 chrX 18585327 18585629 -158388511 + MER39B LTR ERV1 426 653 0 231 61 0 0 chrX 18585629 18585662 -158388478 - LTR49 LTR ERV1 -562 33 1 2726 106 22 26 chrX 18585779 18586233 -158387907 - L1MA5 LINE L1 -5 6295 5844 219 327 109 10 chrX 18586285 18586386 -158387754 + L2 LINE L2 3154 3264 -8 775 157 0 0 chrX 18587505 18587620 -158386520 + FLAM_C SINE Alu 1 115 -18 195 42 0 0 chrX 18587623 18587647 -158386493 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 828 275 35 72 chrX 18587676 18587963 -158386177 + MLT1I LTR MaLR 47 319 -90 2405 61 0 0 chrX 18587963 18588269 -158385871 + AluSg SINE Alu 1 306 0 828 275 35 72 chrX 18588269 18588355 -158385785 + MLT1I LTR MaLR 319 407 -2 1752 129 17 28 chrX 18589790 18590135 -158384005 + MER61B LTR ERV1 1 425 0 182 298 40 111 chrX 18591009 18591234 -158382906 - L2 LINE L2 -428 2886 2678 268 152 288 0 chrX 18591510 18591576 -158382564 + L2 LINE L2 3229 3313 0 518 348 147 12 chrX 18591698 18592120 -158382020 - L2 LINE L2 -927 2387 1909 3396 228 88 72 chrX 18592265 18592430 -158381710 - L1MC4 LINE L1 -124 7918 7757 1963 122 7 7 chrX 18592430 18592718 -158381422 - AluJb SINE Alu -14 298 11 3396 228 88 72 chrX 18592718 18593246 -158380894 - L1MC4 LINE L1 -285 7757 7239 1218 189 49 35 chrX 18593246 18593394 -158380746 - AluJo SINE Alu -11 291 147 1147 76 12 12 chrX 18593394 18593566 -158380574 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 1894 153 0 3 chrX 18593571 18593859 -158380281 - AluSx SINE Alu -23 289 3 1218 189 49 35 chrX 18593859 18593879 -158380261 - AluJo SINE Alu -158 144 126 441 0 0 0 chrX 18593879 18593928 -158380212 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 1218 189 49 35 chrX 18593928 18594038 -158380102 - AluJo SINE Alu -176 126 2 3396 228 88 72 chrX 18594038 18594662 -158379478 - L1MC4 LINE L1 -803 7239 6579 2400 114 22 6 chrX 18595199 18595557 -158378583 + THE1B LTR MaLR 1 364 0 702 293 68 43 chrX 18595581 18595977 -158378163 - MLT1I LTR MaLR -3 406 1 642 308 79 7 chrX 18597408 18597700 -158376440 - MLT1I LTR MaLR -1 408 96 248 111 0 0 chrX 18598145 18598190 -158375950 + LTR66 LTR ERVL 394 438 -172 192 152 0 0 chrX 18598199 18598232 -158375908 + (TA)n Simple_repeat Simple_repeat 2 34 0 369 83 44 83 chrX 18598509 18598689 -158375451 + (TTTAA)n Simple_repeat Simple_repeat 5 177 0 2046 120 32 0 chrX 18598705 18598988 -158375152 + AluSq SINE Alu 3 294 -19 28926 70 4 0 chrX 18598991 18602740 -158371400 + L1P LINE L1 4 3766 -2380 2316 67 0 0 chrX 18602740 18603031 -158371109 + L1PA5 LINE L1 5849 6148 -6 342 0 0 0 chrX 18603207 18603245 -158370895 + (CA)n Simple_repeat Simple_repeat 2 39 0 293 293 143 23 chrX 18603380 18603513 -158370627 + MIR SINE MIR 18 166 -96 1517 173 100 23 chrX 18603858 18604214 -158369926 + L1MB1 LINE L1 5786 6168 0 238 250 0 0 chrX 18604276 18604324 -158369816 + (CA)n Simple_repeat Simple_repeat 2 49 0 2275 83 3 0 chrX 18604328 18604616 -158369524 + AluSp SINE Alu 1 289 -24 21 36 0 0 chrX 18604993 18605021 -158369119 + AT_rich Low_complexity Low_complexity 1 28 0 289 203 0 16 chrX 18605408 18605472 -158368668 + LTR37B LTR ERV1 8 70 -398 27 73 0 0 chrX 18606739 18606794 -158367346 + AT_rich Low_complexity Low_complexity 1 55 0 228 254 0 16 chrX 18607465 18607528 -158366612 + T-rich Low_complexity Low_complexity 3 64 0 198 71 0 0 chrX 18607865 18607893 -158366247 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 2346 62 3 7 chrX 18607907 18608196 -158365944 - AluSg SINE Alu -22 288 1 369 43 0 0 chrX 18610117 18610153 -158363987 + (TG)n Simple_repeat Simple_repeat 1 83 0 369 43 0 0 chrX 18610153 18610200 -158363940 + (TG)n Simple_repeat Simple_repeat 1 47 0 22 56 0 0 chrX 18610351 18610387 -158363753 + AT_rich Low_complexity Low_complexity 1 36 0 1144 113 0 0 chrX 18611086 18611261 -158362879 - AluSp SINE Alu 0 306 132 2605 144 30 55 chrX 18611499 18611959 -158362181 - L1MA6 LINE L1 -23 6277 5830 2786 10 0 0 chrX 18611959 18612267 -158361873 - AluYa5 SINE Alu -3 308 1 2605 144 30 55 chrX 18612267 18612314 -158361826 - L1MA6 LINE L1 -470 5830 5783 351 285 11 17 chrX 18612337 18612516 -158361624 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 4638 165 37 38 chrX 18612516 18612935 -158361205 - L1MA6 LINE L1 -507 5793 5375 2264 100 0 0 chrX 18612935 18613226 -158360914 - AluSc SINE Alu -14 295 5 4638 165 37 38 chrX 18613226 18613960 -158360180 - L1MA6 LINE L1 -925 5375 4614 2032 115 7 0 chrX 18613960 18614239 -158359901 - AluSx SINE Alu -17 295 15 4638 165 37 38 chrX 18614239 18614369 -158359771 - L1MA6 LINE L1 -1686 4614 4485 1305 199 14 36 chrX 18614369 18614646 -158359494 - AluJo SINE Alu -15 297 27 813 196 0 12 chrX 18614646 18614819 -158359321 - L1MA6 LINE L1 -1660 4486 4316 319 254 0 91 chrX 18614857 18615022 -158359118 - MIR SINE MIR -56 206 57 188 86 29 0 chrX 18616131 18616166 -158357974 + (TA)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chrX 18616642 18616668 -158357472 + AT_rich Low_complexity Low_complexity 1 26 0 222 345 127 0 chrX 18618463 18618605 -158355535 + MIR SINE MIR 48 207 -55 277 304 180 37 chrX 18618938 18619099 -158355041 - MIR SINE MIR -71 191 8 858 196 18 0 chrX 18619687 18619855 -158354285 + MLT1B LTR MaLR 1 171 -219 767 122 0 0 chrX 18619855 18619970 -158354170 + AluSc SINE Alu 188 302 -7 820 250 77 15 chrX 18620012 18620272 -158353868 + MLT1B LTR MaLR 192 467 0 444 186 12 0 chrX 18620722 18620808 -158353332 - MLT1F1 LTR MaLR 0 567 481 850 258 15 49 chrX 18620810 18621074 -158353066 - MLT1E LTR MaLR -317 276 22 188 312 0 52 chrX 18621359 18621436 -158352704 + MIR SINE MIR 12 84 -178 206 321 125 24 chrX 18622207 18622375 -158351765 - MIR SINE MIR -25 237 53 2272 228 51 14 chrX 18622876 18623588 -158350552 + L1MB7 LINE L1 4653 5388 -783 227 338 176 14 chrX 18623650 18623792 -158350348 + MLT1L LTR MaLR 308 472 -143 2479 212 51 47 chrX 18624139 18624277 -158349863 + MER76 LTR ERV 1 137 -551 378 0 0 0 chrX 18624277 18624319 -158349821 + (TA)n Simple_repeat Simple_repeat 2 43 0 2306 91 10 0 chrX 18624319 18624616 -158349524 - AluSx SINE Alu -12 300 1 2479 212 51 47 chrX 18624616 18625161 -158348979 + MER76 LTR ERV 136 688 0 276 30 0 0 chrX 18625348 18625381 -158348759 + (CA)n Simple_repeat Simple_repeat 2 34 0 225 80 40 20 chrX 18625384 18625434 -158348706 + GA-rich Low_complexity Low_complexity 2 52 0 676 161 0 0 chrX 18626447 18626571 -158347569 - L1MD1 LINE L1 -2 6240 6117 6003 145 18 26 chrX 18626573 18626789 -158347351 + L1MA9 LINE L1 5038 5254 -1058 1891 131 134 33 chrX 18626789 18627178 -158346962 + MSTA LTR MaLR 1 428 0 6003 145 18 26 chrX 18627178 18628249 -158345891 + L1MA9 LINE L1 5254 6312 0 2901 147 35 39 chrX 18628245 18628788 -158345352 + L1MB2 LINE L1 5428 5968 -215 * 2321 90 0 0 chrX 18628788 18629098 -158345042 + AluSg SINE Alu 1 310 0 384 22 0 0 chrX 18629098 18629143 -158344997 + (GGAA)n Simple_repeat Simple_repeat 2 46 0 927 161 32 37 chrX 18629143 18629361 -158344779 + L1MB2 LINE L1 5953 6169 -2 1157 242 74 55 chrX 18629364 18629781 -158344359 - L1MD2 LINE L1 -123 6236 5812 1203 296 48 12 chrX 18629781 18630369 -158343771 + L1MB7 LINE L1 5516 6124 -60 690 253 55 0 chrX 18630414 18630671 -158343469 + L1M4 LINE L1 4316 4586 -1560 407 278 87 23 chrX 18630695 18631111 -158343029 + L1M4 LINE L1 5358 5815 -351 1667 256 71 56 chrX 18631113 18632217 -158341923 + L1MB7 LINE L1 4517 5603 -581 2241 109 0 6 chrX 18632217 18632529 -158341611 - AluSg SINE Alu 0 310 1 1667 256 71 56 chrX 18632529 18632919 -158341221 + L1MB7 LINE L1 5603 6033 -151 2170 121 13 0 chrX 18632919 18633226 -158340914 - AluSx SINE Alu -1 311 1 1667 256 71 56 chrX 18633226 18633380 -158340760 + L1MB7 LINE L1 6033 6183 -1 183 42 0 0 chrX 18633392 18633416 -158340724 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 1750 152 0 31 chrX 18633416 18633705 -158340435 - AluJb SINE Alu -32 280 1 1775 263 31 29 chrX 18633706 18633876 -158340264 + L1MB7 LINE L1 5440 5608 -576 2408 90 0 3 chrX 18633876 18634188 -158339952 + AluSp SINE Alu 3 313 0 1775 263 31 29 chrX 18634188 18634758 -158339382 + L1MB7 LINE L1 5608 6181 -3 1075 269 95 51 chrX 18634754 18635682 -158338458 + L1M4 LINE L1 4321 5289 -857 * 1018 190 20 75 chrX 18635715 18635895 -158338245 + L1PB4 LINE L1 5905 6070 -86 2244 103 0 0 chrX 18635895 18636231 -158337909 + AluSg SINE Alu 1 336 0 1018 190 20 75 chrX 18636231 18636302 -158337838 + L1PB4 LINE L1 6070 6143 -13 545 268 60 89 chrX 18636357 18636524 -158337616 + L1M4 LINE L1 5272 5442 -727 1524 153 4 0 chrX 18636524 18636766 -158337374 + AluJo SINE Alu 47 289 -23 545 268 60 89 chrX 18636766 18637147 -158336993 + L1M4 LINE L1 5442 5807 -362 514 220 31 78 chrX 18637162 18637258 -158336882 + L1MB7 LINE L1 4517 4601 -1545 2360 76 0 0 chrX 18637258 18637561 -158336579 + AluY SINE Alu 1 303 -8 514 220 31 78 chrX 18637561 18637655 -158336485 + L1MB7 LINE L1 4601 4698 -1448 1359 143 55 48 chrX 18637727 18638000 -158336140 + AluJo SINE Alu 27 301 -11 414 0 0 0 chrX 18638091 18638137 -158336003 + (CA)n Simple_repeat Simple_repeat 1 46 0 1164 283 49 21 chrX 18638139 18638709 -158335431 + L1MB7 LINE L1 5134 5723 -443 477 269 162 0 chrX 18638760 18639031 -158335109 + L1MB7 LINE L1 5861 6175 -9 * 1214 271 20 30 chrX 18639030 18639072 -158335068 + L1M4 LINE L1 4316 4357 -1789 2025 116 0 3 chrX 18639072 18639390 -158334750 + AluSx SINE Alu 1 317 0 1214 271 20 30 chrX 18639390 18639855 -158334285 + L1M4 LINE L1 4357 4819 -1327 588 165 68 11 chrX 18639854 18640030 -158334110 + L1M4 LINE L1 5205 5390 -756 * 401 233 16 23 chrX 18640029 18640158 -158333982 + L1MB8 LINE L1 6039 6166 -12 * 287 167 0 0 chrX 18640169 18640223 -158333917 + L1M4 LINE L1 4324 4377 -1769 2301 92 0 0 chrX 18640349 18640643 -158333497 + AluSx SINE Alu 1 294 -18 225 94 0 0 chrX 18640709 18640741 -158333399 + (A)n Simple_repeat Simple_repeat 1 32 0 21 57 0 0 chrX 18642228 18642263 -158331877 + AT_rich Low_complexity Low_complexity 1 35 0 418 338 162 51 chrX 18644842 18645245 -158328895 + L2 LINE L2 2319 2676 -638 194 0 0 37 chrX 18645245 18645272 -158328868 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2244 101 0 0 chrX 18645272 18645559 -158328581 - AluSx SINE Alu -25 287 1 418 338 162 51 chrX 18645559 18645704 -158328436 + L2 LINE L2 2675 2929 -385 259 349 0 66 chrX 18645733 18645839 -158328301 + L2 LINE L2 2980 3078 -194 764 324 116 31 chrX 18645841 18646323 -158327817 - LTR33A LTR ERVL 0 523 1 263 302 85 0 chrX 18646398 18646504 -158327636 + L2 LINE L2 3182 3296 -17 1471 252 69 84 chrX 18647171 18647771 -158326369 - MLT1E LTR MaLR -2 591 1 2523 62 0 0 chrX 18649068 18649377 -158324763 + AluY SINE Alu 1 309 -2 273 392 133 3 chrX 18650108 18650440 -158323700 + L2 LINE L2 2324 2698 -616 202 385 0 13 chrX 18650586 18650664 -158323476 + L2 LINE L2 3001 3077 -195 23 0 0 0 chrX 18650973 18650996 -158323144 + AT_rich Low_complexity Low_complexity 1 23 0 237 248 57 67 chrX 18651023 18651128 -158323012 - MIR SINE MIR -108 154 51 518 333 46 0 chrX 18652039 18652234 -158321906 - MIR SINE MIR -51 211 8 3065 86 12 5 chrX 18653845 18654276 -158319864 + L1PA8 LINE L1 5738 6171 -1 375 314 8 8 chrX 18654525 18654643 -158319497 + MIR SINE MIR 5 122 -140 466 233 8 50 chrX 18655559 18655679 -158318461 + MER20 DNA MER1_type 2 116 -103 2387 170 6 46 chrX 18655944 18656421 -158317719 + MER101 LTR ERV1 17 474 0 25 0 0 0 chrX 18656454 18656479 -158317661 + AT_rich Low_complexity Low_complexity 1 25 0 2151 84 30 3 chrX 18656587 18656883 -158317257 + AluSp SINE Alu 1 304 -9 371 280 21 21 chrX 18657840 18657983 -158316157 + MLT1H LTR MaLR 12 154 -395 289 238 12 60 chrX 18658330 18658414 -158315726 + L2 LINE L2 3234 3313 0 1643 313 44 18 chrX 18658455 18659334 -158314806 - L2 LINE L2 0 3313 2412 1954 125 3 99 chrX 18659598 18659982 -158314158 - MER7A DNA MER2_type -1 345 1 285 57 0 0 chrX 18660085 18660120 -158314020 + U2 snRNA snRNA 1 35 -153 266 291 51 98 chrX 18660448 18660682 -158313458 + MIR SINE MIR 9 231 -31 30 27 0 0 chrX 18661153 18661190 -158312950 + AT_rich Low_complexity Low_complexity 1 37 0 514 329 51 8 chrX 18661751 18661985 -158312155 + MIR SINE MIR 1 244 -18 2068 127 0 19 chrX 18662736 18663052 -158311088 - AluSq SINE Alu -3 310 1 282 148 0 0 chrX 18665767 18665821 -158308319 + (GAA)n Simple_repeat Simple_repeat 1 54 0 616 220 30 32 chrX 18666464 18666691 -158307449 - MLT1C LTR MaLR -51 415 194 2060 142 0 3 chrX 18666706 18667001 -158307139 - AluSx SINE Alu -18 294 1 8179 57 6 214 chrX 18667094 18668840 -158305300 - SVA Other Other -3 1383 1 1587 171 4 4 chrX 18669962 18670214 -158303926 - AluJo SINE Alu -14 298 47 263 315 2 32 chrX 18670931 18671065 -158303075 + MIR SINE MIR 6 135 -73 258 242 30 0 chrX 18671800 18671866 -158302274 - HERVL40 LTR ERVL -335 2702 2635 764 265 74 27 chrX 18672185 18672483 -158301657 - HERVL40 LTR ERVL -690 2347 2036 733 243 92 5 chrX 18672486 18672692 -158301448 - HERVL40 LTR ERVL -1240 4290 4067 2075 28 0 0 chrX 18672692 18672946 -158301194 - L1PA4 LINE L1 -263 5892 5639 2246 34 0 0 chrX 18672946 18673213 -158300927 + L1PA4 LINE L1 5887 6155 0 949 218 43 9 chrX 18673270 18673481 -158300659 - MER20 DNA MER1_type -1 218 1 2237 156 5 5 chrX 18673760 18674150 -158299990 + MLT1B LTR MaLR 1 390 0 275 287 59 40 chrX 18674234 18674335 -158299805 - MIR SINE MIR -1 261 159 820 326 68 9 chrX 18674336 18674774 -158299366 + LTR16B LTR ERVL 1 464 0 189 302 123 28 chrX 18674788 18674894 -158299246 - MIR3 SINE MIR -81 127 12 2744 84 16 0 chrX 18675740 18676109 -158298031 - THE1C LTR MaLR 0 375 1 220 26 0 51 chrX 18676117 18676156 -158297984 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2191 104 0 0 chrX 18676156 18676434 -158297706 - AluSx SINE Alu -34 278 1 2273 105 0 6 chrX 18677573 18677888 -158296252 + AluSq SINE Alu 1 313 0 216 0 0 0 chrX 18678212 18678236 -158295904 + (TA)n Simple_repeat Simple_repeat 2 25 0 1462 225 36 47 chrX 18678236 18678708 -158295432 + MLT1D LTR MaLR 39 505 0 2297 114 0 0 chrX 18678735 18679032 -158295108 + AluSg SINE Alu 1 297 -13 320 284 22 5 chrX 18679169 18679367 -158294773 + L1M1 LINE L1 5605 5806 -365 701 196 0 8 chrX 18679473 18679606 -158294534 + FLAM_C SINE Alu 1 132 -11 3893 121 14 20 chrX 18679627 18680265 -158293875 + MER41B LTR ERV1 2 635 0 1573 207 0 17 chrX 18680320 18680620 -158293520 + AluJo SINE Alu 1 295 -17 2018 142 10 0 chrX 18680692 18680987 -158293153 + AluSx SINE Alu 1 298 -14 861 214 70 31 chrX 18681203 18681641 -158292499 - LTR48B LTR ERV1 0 644 137 2579 145 109 2 chrX 18681858 18682307 -158291833 + MER61D LTR ERV1 5 501 0 638 156 22 37 chrX 18682322 18682457 -158291683 + MER61D-int LTR ERV1 17 149 -5068 4108 169 24 30 chrX 18682838 18682981 -158291159 + MER61D-int LTR ERV1 598 740 -4477 2338 73 7 7 chrX 18682981 18683282 -158290858 - AluSq SINE Alu -12 301 1 4108 169 24 30 chrX 18683282 18683754 -158290386 + MER61D-int LTR ERV1 740 1214 -4003 8482 38 8 2 chrX 18683754 18684755 -158289385 + LTR13 LTR ERVK 1 1007 0 4108 169 24 30 chrX 18684755 18685961 -158288179 + MER61D-int LTR ERV1 1214 4824 -393 541 120 0 0 chrX 18685961 18686036 -158288104 + AluS SINE Alu 1 75 -238 2086 133 35 6 chrX 18686036 18686382 -158287758 + MER61D LTR ERV1 146 501 0 1737 153 5 6 chrX 18686971 18687531 -158286609 + LTR39 LTR ERV1 164 783 0 1032 269 63 34 chrX 18687965 18688412 -158285728 - L1MEc LINE L1 -5880 516 57 444 276 42 14 chrX 18688993 18689210 -158284930 - Charlie2 DNA MER1_type -91 2771 2549 788 229 43 91 chrX 18689255 18689696 -158284444 + LTR37B LTR ERV1 1 420 -48 295 254 50 54 chrX 18689698 18689958 -158284182 - Charlie2 DNA MER1_type -366 2496 2238 1850 220 67 18 chrX 18689987 18690530 -158283610 - Charlie2a DNA MER1_type -1830 1032 463 309 95 0 0 chrX 18690530 18690572 -158283568 - LOR1b LTR ERV1 0 461 420 313 274 105 0 chrX 18690899 18690994 -158283146 + L1ME1 LINE L1 4488 4592 -1554 30 45 0 0 chrX 18691009 18691053 -158283087 + AT_rich Low_complexity Low_complexity 1 44 0 297 243 0 0 chrX 18691456 18691526 -158282614 + L1P LINE L1 4900 4969 -1177 237 312 81 11 chrX 18691836 18692022 -158282118 + L1ME1 LINE L1 5352 5550 -628 417 160 1 29 chrX 18692090 18692194 -158281946 + L1ME1 LINE L1 5703 5805 -366 902 182 39 107 chrX 18692203 18692483 -158281657 - MLT1B LTR MaLR 0 390 130 894 200 28 47 chrX 18692484 18692645 -158281495 - MLT1C LTR MaLR -211 256 100 2595 129 31 10 chrX 18692645 18693062 -158281078 - MSTA LTR MaLR 0 428 3 894 200 28 47 chrX 18693062 18693155 -158280985 - MLT1C LTR MaLR -367 100 7 488 276 62 22 chrX 18693159 18693497 -158280643 + L1ME1 LINE L1 5831 6331 -3 228 67 0 0 chrX 18693623 18693653 -158280487 + (TA)n Simple_repeat Simple_repeat 1 30 0 27 92 0 0 chrX 18694358 18694434 -158279706 + AT_rich Low_complexity Low_complexity 1 76 0 23 0 0 0 chrX 18695737 18695760 -158278380 + AT_rich Low_complexity Low_complexity 1 23 0 1767 155 0 57 chrX 18695915 18696231 -158277909 + AluJb SINE Alu 1 298 -14 1708 170 0 44 chrX 18696404 18696721 -158277419 - AluJb SINE Alu -9 303 1 598 133 95 0 chrX 18697449 18697554 -158276586 - FLAM_A SINE Alu -15 118 4 210 71 0 0 chrX 18702545 18702573 -158271567 + (TC)n Simple_repeat Simple_repeat 2 29 0 414 0 0 0 chrX 18702575 18702621 -158271519 + (CA)n Simple_repeat Simple_repeat 1 46 0 6721 104 6 16 chrX 18703506 18704610 -158269530 - L1MA2 LINE L1 0 6304 5212 17311 153 55 24 chrX 18704612 18704802 -158269338 - L1M1 LINE L1 -4173 3392 3209 2053 136 0 3 chrX 18704802 18705112 -158269028 - AluSx SINE Alu -3 309 1 17311 153 55 24 chrX 18705112 18708199 -158265941 - L1M1 LINE L1 -4356 3209 12 3371 191 49 33 chrX 18708236 18709501 -158264639 - L1MB8 LINE L1 0 6178 4884 469 216 54 45 chrX 18709514 18709736 -158264404 + Charlie1 DNA MER1_type 2533 2756 -5 3013 165 34 0 chrX 18909930 18910468 -158063672 + L1MA9 LINE L1 5419 5974 -338 736 184 0 0 chrX 18910464 18910605 -158063535 - L1 LINE L1 -1154 4992 4852 * 1909 161 18 0 chrX 18910611 18910941 -158063199 + L1PB4 LINE L1 5807 6142 -14 1789 149 26 23 chrX 18910958 18911111 -158063029 + L1MA9 LINE L1 5961 6112 -200 1414 183 93 19 chrX 18911111 18911434 -158062706 - MER7A DNA MER2_type -1 345 1 1789 149 26 23 chrX 18911434 18911630 -158062510 + L1MA9 LINE L1 6112 6311 -1 226 268 10 10 chrX 18911725 18911822 -158062318 + CT-rich Low_complexity Low_complexity 4 100 0 281 317 28 14 chrX 18912339 18912484 -158061656 + HAL1 LINE L1 1112 1258 -1249 360 176 40 0 chrX 18912605 18912679 -158061461 + MLT1D LTR MaLR 429 505 0 387 308 95 46 chrX 18913438 18913805 -158060335 + L1MC/D LINE L1 4905 5289 -857 1170 264 57 10 chrX 18913813 18914196 -158059944 + L1MC/D LINE L1 5319 5719 -2089 1756 178 11 0 chrX 18914213 18914494 -158059646 + AluJo SINE Alu 5 288 -24 2073 138 0 19 chrX 18914654 18914965 -158059175 + AluSx SINE Alu 1 305 -7 1037 127 16 19 chrX 18914977 18915190 -158058950 + L1MB2 LINE L1 5101 5310 -854 437 219 80 36 chrX 18915194 18915331 -158058809 + L1MC/D LINE L1 5560 5702 -2106 5508 86 56 4 chrX 18915368 18916196 -158057944 + L1MA2 LINE L1 5433 6303 -1 2372 97 0 7 chrX 18916214 18916522 -158057618 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 18916728 18916750 -158057390 + AT_rich Low_complexity Low_complexity 1 22 0 1491 189 108 44 chrX 18917025 18917368 -158056772 - MLT1A1 LTR MaLR 0 365 1 226 224 0 20 chrX 18919248 18919297 -158054843 + MER5A DNA MER1_type 4 51 -138 1663 181 46 38 chrX 18919297 18919481 -158054659 + MLT1B LTR MaLR 1 182 -208 387 0 0 0 chrX 18919481 18919524 -158054616 + (TC)n Simple_repeat Simple_repeat 2 44 0 1663 181 46 38 chrX 18919524 18919710 -158054430 + MLT1B LTR MaLR 182 374 -16 548 239 51 0 chrX 18919716 18919854 -158054286 + MER5A DNA MER1_type 45 189 0 201 232 89 18 chrX 18921043 18921099 -158053041 + L2 LINE L2 3206 3265 -7 17276 69 7 5 chrX 18922319 18924608 -158049532 - L1P LINE L1 -3854 2292 1 2600 161 33 4 chrX 18924606 18925065 -158049075 + L1MB2 LINE L1 5623 6094 -77 * 407 200 0 0 chrX 18925068 18925138 -158049002 + FAM SINE Alu 89 158 -27 3263 125 101 12 chrX 18925163 18925737 -158048403 - L1PB4 LINE L1 -2 6154 5530 4020 109 6 19 chrX 18925737 18925998 -158048142 - L1PA14 LINE L1 -2 6159 5896 1858 167 0 3 chrX 18925998 18926297 -158047843 - AluJb SINE Alu -14 298 1 4020 109 6 19 chrX 18926297 18926660 -158047480 - L1PA14 LINE L1 -265 5896 5542 6738 181 18 12 chrX 18926661 18928534 -158045606 - L1PA12 LINE L1 -3766 3818 1926 2406 160 60 8 chrX 18928558 18929267 -158044873 - L1PB4 LINE L1 -624 5542 4806 394 331 71 39 chrX 18929263 18929571 -158044569 - L1M2 LINE L1 -6528 321 4 * 231 218 0 0 chrX 18929599 18929654 -158044486 + L1MB2 LINE L1 6116 6170 -1 472 340 115 32 chrX 18929709 18930109 -158044031 + L2 LINE L2 2881 3313 0 2280 146 26 81 chrX 18931578 18932085 -158042055 - L1MB2 LINE L1 0 6171 5693 264 301 57 67 chrX 18932090 18932107 -158042033 + MER20 DNA MER1_type 7 23 -196 2529 70 21 49 chrX 18932107 18932493 -158041647 + THE1C LTR MaLR 1 375 0 264 301 57 67 chrX 18932493 18932684 -158041456 + MER20 DNA MER1_type 23 213 -6 568 248 80 118 chrX 18932888 18933183 -158040957 + MER34 LTR ERV1 1 306 -236 2122 136 128 10 chrX 18933183 18933566 -158040574 + MSTA LTR MaLR 1 428 0 568 248 80 118 chrX 18933566 18933724 -158040416 + MER34 LTR ERV1 306 432 -110 2285 98 3 0 chrX 18933724 18934021 -158040119 + AluSq SINE Alu 1 298 -15 568 248 80 118 chrX 18934021 18934126 -158040014 + MER34 LTR ERV1 432 539 -3 303 250 65 28 chrX 18934491 18934599 -158039541 - L1ME3A LINE L1 -214 5956 5845 1181 176 135 51 chrX 18934792 18934970 -158039170 + LTR37A LTR ERV1 1 163 -263 396 0 0 0 chrX 18934970 18935014 -158039126 + (CA)n Simple_repeat Simple_repeat 2 45 0 1181 176 135 51 chrX 18935014 18935228 -158038912 + LTR37A LTR ERV1 163 426 0 216 97 0 0 chrX 18935689 18935720 -158038420 + (CA)n Simple_repeat Simple_repeat 2 32 0 33 94 0 0 chrX 18936308 18936404 -158037736 + AT_rich Low_complexity Low_complexity 1 96 0 2259 113 0 3 chrX 18936456 18936767 -158037373 - AluSq SINE Alu -3 310 1 37 62 0 0 chrX 18936812 18936877 -158037263 + AT_rich Low_complexity Low_complexity 1 65 0 13809 44 2 5 chrX 18937138 18939626 -158034514 - L1PA5 LINE L1 -3 6151 3666 450 175 3 37 chrX 18939896 18940021 -158034119 + L1M3 LINE L1 5236 5359 -787 269 316 13 0 chrX 18940084 18940163 -158033977 + MER82 DNA MER2_type 48 127 -526 8143 132 35 11 chrX 18940163 18941558 -158032582 - Ricksha DNA DNA -39 3207 1821 1726 156 3 3 chrX 18941556 18941838 -158032302 - Ricksha DNA DNA -966 288 7 * 1542 169 0 22 chrX 18941840 18942118 -158032022 + L1M3 LINE L1 5345 5616 -567 693 260 97 50 chrX 18942118 18942457 -158031683 - LTR16C LTR ERVL -23 468 114 224 261 91 11 chrX 18943086 18943174 -158030966 + MIR3 SINE MIR 105 199 -9 252 149 68 0 chrX 18943547 18943621 -158030519 + (TA)n Simple_repeat Simple_repeat 1 79 0 761 191 105 34 chrX 18944742 18944951 -158029189 - MER58A DNA MER1_type 0 224 1 264 289 106 10 chrX 18945153 18945257 -158028883 + MIR SINE MIR 99 212 -50 5893 96 8 9 chrX 18945513 18946367 -158027773 - L1PA15 LINE L1 -2 6163 5311 467 250 189 0 chrX 18946572 18946720 -158027420 + L2 LINE L2 2190 2365 -949 780 353 74 18 chrX 18946727 18947263 -158026877 + L2 LINE L2 2475 3042 -271 584 343 53 4 chrX 18947262 18947507 -158026633 + MIR SINE MIR 6 262 0 * 35 24 0 0 chrX 18947606 18947648 -158026492 + AT_rich Low_complexity Low_complexity 1 42 0 599 234 8 0 chrX 18947685 18947809 -158026331 + L2 LINE L2 3186 3310 -3 2486 68 0 0 chrX 18948212 18948523 -158025617 + AluY SINE Alu 1 311 0 25 0 0 0 chrX 18948627 18948652 -158025488 + AT_rich Low_complexity Low_complexity 1 25 0 2331 71 0 43 chrX 18949603 18949928 -158024212 + AluY SINE Alu 1 311 0 26 52 0 17 chrX 18949959 18949973 -158024167 + AT_rich Low_complexity Low_complexity 1 14 -43 2078 69 3 100 chrX 18949973 18950293 -158023847 + AluSq SINE Alu 1 289 -24 26 52 0 17 chrX 18950293 18950336 -158023804 + AT_rich Low_complexity Low_complexity 14 57 0 1965 162 31 11 chrX 18950618 18950970 -158023170 - MLT1A1 LTR MaLR -6 359 1 2488 63 7 0 chrX 18951578 18951880 -158022260 - AluSp SINE Alu -9 304 1 1858 209 37 28 chrX 18952154 18952617 -158021523 + MLT1C LTR MaLR 1 467 0 1883 178 14 17 chrX 18952874 18953223 -158020917 + MER7A DNA MER2_type 1 346 0 398 315 129 47 chrX 18953472 18954240 -158019900 + L1 LINE L1 2894 3724 -2422 2263 143 34 31 chrX 18954372 18954790 -158019350 - MSTB1 LTR MaLR -13 419 1 313 354 69 22 chrX 18954831 18955108 -158019032 - L1 LINE L1 -1446 4700 4411 226 200 40 0 chrX 18955318 18955368 -158018772 - L1 LINE L1 -3429 2717 2666 3859 140 10 2 chrX 18955373 18955987 -158018153 + L1PB4 LINE L1 5436 6054 -102 8940 101 19 3 chrX 18955996 18957229 -158016911 + HSMAR1 DNA Mariner 4 1255 -32 365 119 0 45 chrX 18957231 18957298 -158016842 + L1PA16 LINE L1 6087 6150 -16 520 298 148 45 chrX 18957374 18957793 -158016347 - L1 LINE L1 -3572 2574 2113 1578 199 115 21 chrX 18958085 18958563 -158015577 + Charlie1b DNA MER1_type 1 523 0 1125 77 26 0 chrX 18959135 18959290 -158014850 - L1MA3 LINE L1 -1 6304 6146 21 0 0 0 chrX 18959894 18959915 -158014225 + AT_rich Low_complexity Low_complexity 1 21 0 231 310 20 42 chrX 18960265 18960382 -158013758 + MIR SINE MIR 22 141 -67 31 58 0 0 chrX 18960723 18960775 -158013365 + AT_rich Low_complexity Low_complexity 1 52 0 421 171 0 0 chrX 18960924 18960994 -158013146 + AluJb SINE Alu 1 70 -242 1469 143 0 9 chrX 18961032 18961263 -158012877 + AluJb SINE Alu 73 301 -11 420 254 15 62 chrX 18961515 18961645 -158012495 - L2 LINE L2 0 3313 3190 5290 112 45 2 chrX 18962354 18963157 -158010983 - L1PA14 LINE L1 0 6161 5325 2244 72 7 0 chrX 18963165 18963443 -158010697 - AluSp SINE Alu -16 297 18 1874 73 44 0 chrX 18963443 18963718 -158010422 + L1MA5 LINE L1 6012 6298 -2 2630 175 13 0 chrX 18963751 18964225 -158009915 + L1MA8 LINE L1 5591 6070 -221 2155 106 7 3 chrX 18964262 18964555 -158009585 + AluSq SINE Alu 1 294 -19 380 324 35 12 chrX 18964774 18964947 -158009193 + MER69A DNA AcHobo 1 177 0 800 259 10 0 chrX 18965897 18966090 -158008050 - L2 LINE L2 -983 2331 2137 23 0 0 0 chrX 18966819 18966842 -158007298 + AT_rich Low_complexity Low_complexity 1 23 0 42 57 0 0 chrX 18967933 18968003 -158006137 + GC_rich Low_complexity Low_complexity 1 70 0 28 0 0 0 chrX 18968056 18968084 -158006056 + GC_rich Low_complexity Low_complexity 1 28 0 1559 171 25 4 chrX 18968587 18968867 -158005273 - MLT1C LTR MaLR -50 417 132 362 305 150 0 chrX 18969172 18969339 -158004801 - L1ME LINE L1 -3459 2621 2430 311 312 50 7 chrX 18969796 18969937 -158004203 - L1ME LINE L1 -5887 183 37 1497 164 47 3 chrX 18970640 18970939 -158003201 - L1MA7 LINE L1 -7 6284 5973 420 20 0 0 chrX 18971405 18971454 -158002686 + (TG)n Simple_repeat Simple_repeat 2 50 0 630 178 14 62 chrX 18971955 18972101 -158002039 + L1ME LINE L1 3996 4134 -2012 * 3602 209 65 17 chrX 18972099 18973223 -158000917 + L1ME LINE L1 4421 5599 -567 1016 199 76 0 chrX 18973227 18973518 -158000622 + L1 LINE L1 3029 3341 -2805 566 105 21 0 chrX 18973520 18973615 -158000525 + L1PB2 LINE L1 6046 6142 -9 6377 187 32 30 chrX 18973770 18974715 -157999425 + L1MA8 LINE L1 3207 4149 -2142 1664 185 11 0 chrX 18974715 18974991 -157999149 + AluJb SINE Alu 1 279 -33 189 0 0 0 chrX 18974995 18975016 -157999124 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 6377 187 32 30 chrX 18975016 18976111 -157998029 + L1MA8 LINE L1 4151 5288 -1003 2055 118 0 55 chrX 18976111 18976441 -157997699 + AluSx SINE Alu 1 312 0 6377 187 32 30 chrX 18976441 18977441 -157996699 + L1MA8 LINE L1 5288 6285 -6 233 189 0 0 chrX 18977454 18977507 -157996633 + L1MB4 LINE L1 6127 6179 -1 234 320 62 23 chrX 18977520 18977648 -157996492 + MIR SINE MIR 20 152 -110 6949 181 12 8 chrX 18977654 18979112 -157995028 - L1PA15 LINE L1 -1 6164 4695 291 28 0 0 chrX 18979112 18979148 -157994992 + (TTC)n Simple_repeat Simple_repeat 2 37 0 6949 181 12 8 chrX 18979148 18979859 -157994281 - L1PA15 LINE L1 -1470 4695 3989 309 250 150 0 chrX 18980531 18980631 -157993509 + MER92B LTR ERV1 1 115 -521 339 194 0 0 chrX 18980781 18980848 -157993292 + MER92C LTR ERV1 487 553 -1 746 182 10 134 chrX 18981250 18981541 -157992599 + MER31-int LTR ERV1 1039 1293 -3643 1286 233 33 100 chrX 18981890 18982379 -157991761 + MER31-int LTR ERV1 3778 4233 -703 502 209 16 39 chrX 18982396 18982525 -157991615 + LTR37A LTR ERV1 1 126 -300 257 150 0 0 chrX 18982583 18982623 -157991517 + MER31-int LTR ERV1 4330 4369 -567 390 237 10 0 chrX 18982662 18982759 -157991381 + MER31-int LTR ERV1 4372 4469 -467 260 260 0 39 chrX 18982826 18982903 -157991237 + MER31-int LTR ERV1 4482 4555 -381 310 231 0 0 chrX 18983360 18983425 -157990715 + MER92B LTR ERV1 1 65 -571 360 167 30 0 chrX 18983645 18983711 -157990429 + MER92C LTR ERV1 487 554 0 16889 105 8 15 chrX 18984494 18987409 -157986731 - L1P3 LINE L1 -2786 3675 763 576 311 56 20 chrX 18987413 18987770 -157986370 - L1MC/D LINE L1 -1988 5820 5451 292 252 14 35 chrX 18987773 18987916 -157986224 + (TATATG)n Simple_repeat Simple_repeat 5 144 0 2983 198 15 65 chrX 18987938 18988615 -157985525 - MER82 DNA MER2_type -10 643 1 1587 31 5 0 chrX 18988730 18988924 -157985216 - L1PA4 LINE L1 -3 6152 5958 412 214 16 8 chrX 18988945 18989071 -157985069 + L1ME1 LINE L1 5100 5226 -920 270 0 0 0 chrX 18989086 18989116 -157985024 + (TG)n Simple_repeat Simple_repeat 2 31 0 747 206 19 0 chrX 18989279 18989439 -157984701 + MLT1C LTR MaLR 305 467 0 24 0 0 0 chrX 18989917 18989941 -157984199 + AT_rich Low_complexity Low_complexity 1 24 0 357 286 173 1 chrX 18990255 18990454 -157983686 + MIR SINE MIR 34 262 0 2536 172 36 12 chrX 18990618 18991111 -157983029 + MLT1D LTR MaLR 1 505 0 1208 248 94 64 chrX 18991140 18991672 -157982468 - MLT1H LTR MaLR -1 548 1 29 0 0 0 chrX 18992589 18992618 -157981522 + AT_rich Low_complexity Low_complexity 1 29 0 297 206 48 0 chrX 18992620 18992683 -157981457 - L1MD2 LINE L1 -235 6124 6059 * 1218 205 4 0 chrX 18992680 18992929 -157981211 + L1ME1 LINE L1 5680 5929 -237 196 390 45 19 chrX 18992929 18993083 -157981057 + L2 LINE L2 2595 2752 -562 3170 81 25 0 chrX 18993265 18993736 -157980404 + L1P LINE L1 3530 4012 -2134 394 312 26 64 chrX 18993767 18994001 -157980139 - L1MEd LINE L1 -2580 3549 3325 4885 158 43 14 chrX 18994007 18994977 -157979163 - L1MB2 LINE L1 0 6171 5172 373 191 247 12 chrX 18995111 18995273 -157978867 - L1MEd LINE L1 -2920 3209 3010 333 262 159 24 chrX 18995442 18995694 -157978446 - L1MEd LINE L1 -4908 1211 926 22 0 0 0 chrX 18995707 18995729 -157978411 + AT_rich Low_complexity Low_complexity 1 22 0 237 33 0 0 chrX 18995774 18995804 -157978336 + (TTG)n Simple_repeat Simple_repeat 2 31 0 420 364 20 54 chrX 18995848 18996145 -157977995 - L1MEd LINE L1 -5730 389 103 867 125 7 0 chrX 18996268 18996412 -157977728 + L1MA4A LINE L1 6147 6291 -12 222 357 71 0 chrX 18996665 18996791 -157977349 + L3 LINE CR1 940 1074 -503 569 330 115 3 chrX 18996824 18997172 -157976968 + L3 LINE CR1 1190 1576 -1 2182 181 20 10 chrX 18997657 18998054 -157976086 + MLT1C LTR MaLR 3 403 -64 552 229 25 8 chrX 18998444 18998566 -157975574 - FLAM_C SINE Alu -9 124 1 1011 186 11 0 chrX 18998571 18998754 -157975386 + Tigger1 DNA MER2_type 2231 2415 -3 242 279 112 6 chrX 18998757 18998918 -157975222 - L1M4 LINE L1 -2380 3766 3589 243 0 0 0 chrX 18998921 18998948 -157975192 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 9815 35 0 0 chrX 18998954 19000899 -157973241 - L1PA3 LINE L1 -3 6152 4206 7713 32 2 0 chrX 19000899 19001859 -157972281 + L1P LINE L1 2515 3476 -2670 2219 33 0 7 chrX 19002021 19002292 -157971848 + L1PA4 LINE L1 5887 6155 0 2245 181 55 4 chrX 19002306 19003017 -157971123 - L1M3 LINE L1 -544 5639 4887 22 35 0 0 chrX 19003025 19003054 -157971086 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 19004984 19005007 -157969133 + AT_rich Low_complexity Low_complexity 1 23 0 352 311 27 12 chrX 19005285 19005510 -157968630 - L1ME4a LINE L1 -216 5905 5674 21646 41 8 2 chrX 19005672 19008596 -157965544 + L1P2 LINE L1 2736 5682 -472 424 366 45 24 chrX 19009366 19009612 -157964528 + MIR SINE MIR 3 253 -9 1808 111 49 85 chrX 19010467 19010856 -157963284 + THE1C LTR MaLR 1 375 0 207 69 0 0 chrX 19011833 19011862 -157962278 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 329 242 50 43 chrX 19012585 19012746 -157961394 - MER103 DNA DNA -2 164 3 331 143 18 0 chrX 19013132 19013188 -157960952 - THE1C LTR MaLR 0 375 319 415 160 287 7 chrX 19013926 19014060 -157960080 - MER5A DNA MER1_type -10 179 4 398 389 36 16 chrX 19014294 19014541 -157959599 + L3 LINE CR1 217 468 -1109 255 365 24 16 chrX 19014807 19014933 -157959207 + L3 LINE CR1 500 626 -951 256 225 56 0 chrX 19016915 19016986 -157957154 - MER20 DNA MER1_type -143 76 2 496 241 146 50 chrX 19017466 19017727 -157956413 - L2 LINE L2 -1153 2161 1876 207 0 0 0 chrX 19017735 19017758 -157956382 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2018 110 22 0 chrX 19017758 19018030 -157956110 - AluSx SINE Alu -34 278 1 277 344 82 6 chrX 19018335 19018518 -157955622 + L3b LINE CR1 1145 1341 -242 22 80 0 0 chrX 19018944 19018994 -157955146 + AT_rich Low_complexity Low_complexity 1 50 0 270 318 135 41 chrX 19019512 19019682 -157954458 - MIR SINE MIR -70 192 7 427 136 48 87 chrX 19019683 19019786 -157954354 + MER92B LTR ERV1 1 99 -537 2271 79 41 0 chrX 19019799 19020090 -157954050 - AluSg SINE Alu -7 303 1 1547 132 47 27 chrX 19020090 19020347 -157953793 - MER1B DNA MER1_type -6 333 72 887 221 9 9 chrX 19020482 19020695 -157953445 - L1M3 LINE L1 -716 5467 5255 287 87 0 0 chrX 19021120 19021166 -157952974 - L1MA3 LINE L1 0 6305 6260 386 207 4 100 chrX 19022573 19022718 -157951422 - MLT1H LTR MaLR -246 191 28 276 120 0 0 chrX 19024375 19024425 -157949715 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1913 119 20 13 chrX 19025048 19025350 -157948790 - AluSx SINE Alu -8 304 1 303 253 112 79 chrX 19025504 19025682 -157948458 - L1M2 LINE L1 -5909 940 757 2937 226 21 7 chrX 19025744 19026649 -157947491 + L1MDa LINE L1 2482 3398 -3142 444 181 0 12 chrX 19026721 19026804 -157947336 + L1MB7 LINE L1 5068 5149 -997 4208 166 25 6 chrX 19026815 19027600 -157946540 + L1MB7 LINE L1 5376 6175 -9 339 260 65 49 chrX 19027721 19027844 -157946296 - L2 LINE L2 -5 3308 3184 746 287 26 17 chrX 19028765 19028995 -157945145 + MIR SINE MIR 31 262 0 1033 246 109 67 chrX 19029358 19029756 -157944384 - MLT1H1 LTR MaLR -9 546 119 2561 60 0 0 chrX 19029756 19030058 -157944082 - AluY SINE Alu -9 302 1 1033 246 109 67 chrX 19030058 19030183 -157943957 - MLT1H1 LTR MaLR -436 119 1 825 264 61 32 chrX 19031191 19031502 -157942638 + L1MDa LINE L1 88 407 -6133 320 342 66 57 chrX 19031684 19031912 -157942228 + L1MDa LINE L1 413 642 -5898 286 285 63 105 chrX 19032129 19032428 -157941712 + L1MDa LINE L1 789 1006 -5534 4020 212 48 78 chrX 19032472 19033913 -157940227 + L1MDa LINE L1 991 2387 -4153 2123 126 16 40 chrX 19033918 19034291 -157939849 + THE1B LTR MaLR 1 364 0 439 312 77 27 chrX 19034475 19034696 -157939444 + MIR SINE MIR 1 232 -30 1368 148 22 134 chrX 19034701 19035112 -157939028 + MLT1A1 LTR MaLR 1 365 0 809 253 0 6 chrX 19035569 19035747 -157938393 + MER5B DNA MER1_type 2 178 0 384 239 33 0 chrX 19035765 19035857 -157938283 + MER5A DNA MER1_type 12 106 -83 1713 261 57 6 chrX 19036141 19036655 -157937485 + MLT1F LTR MaLR 1 588 -2 1915 223 71 9 chrX 19038046 19038495 -157935645 + MLT1D LTR MaLR 29 505 0 420 270 137 58 chrX 19038667 19039011 -157935129 + L1MC4a LINE L1 5537 5907 -1901 67 60 0 0 chrX 19039615 19039731 -157934409 + AT_rich Low_complexity Low_complexity 1 116 0 361 303 70 38 chrX 19040265 19040450 -157933690 + MIR SINE MIR 65 255 -7 2353 53 0 3 chrX 19040483 19040826 -157933314 - AluY SINE Alu 0 342 1 425 266 35 0 chrX 19040866 19040979 -157933161 - MIR3 SINE MIR -52 156 40 1227 220 39 15 chrX 19041497 19041834 -157932306 + L1MB8 LINE L1 5828 6172 -6 2217 113 0 16 chrX 19043050 19043361 -157930779 - AluSg SINE Alu -4 306 1 3303 127 14 15 chrX 19045194 19045712 -157928428 - Tigger1 DNA MER2_type -1901 517 1 570 192 24 24 chrX 19046119 19046244 -157927896 + LTR37A LTR ERV1 7 131 -295 238 273 36 18 chrX 19046808 19046918 -157927222 + (CCCG)n Simple_repeat Simple_repeat 4 115 0 23 40 0 0 chrX 19046930 19046955 -157927185 + GC_rich Low_complexity Low_complexity 1 25 0 432 91 0 0 chrX 19047137 19047203 -157926937 + (TG)n Simple_repeat Simple_repeat 2 67 0 339 319 85 0 chrX 19047535 19047676 -157926464 + MIR SINE MIR 104 256 -6 1431 185 32 12 chrX 19049132 19049209 -157924931 - MER89 LTR ERV1 -65 494 420 2445 112 43 14 chrX 19049209 19049629 -157924511 + MSTB1 LTR MaLR 1 432 0 1431 185 32 12 chrX 19049629 19049935 -157924205 - MER89 LTR ERV1 -139 420 4 24 0 0 0 chrX 19050196 19050220 -157923920 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chrX 19050300 19050339 -157923801 + AT_rich Low_complexity Low_complexity 1 39 0 320 301 124 18 chrX 19050472 19050585 -157923555 - MIR SINE MIR -63 145 21 3393 238 38 56 chrX 19050958 19052208 -157921932 + L1MC4 LINE L1 6815 8042 0 193 25 0 100 chrX 19052840 19052880 -157921260 + (TATG)n Simple_repeat Simple_repeat 3 38 0 348 24 0 0 chrX 19053062 19053103 -157921037 + (CA)n Simple_repeat Simple_repeat 1 41 0 888 174 12 12 chrX 19053226 19053387 -157920753 - MER58B DNA MER1_type 0 341 181 2363 89 0 3 chrX 19054309 19054611 -157919529 + AluSq SINE Alu 1 301 -12 1368 125 0 10 chrX 19055203 19055395 -157918745 - AluJb SINE Alu -120 192 3 187 205 0 26 chrX 19055399 19055438 -157918702 - MER5B DNA MER1_type -137 41 4 2369 71 0 3 chrX 19055682 19055977 -157918163 - AluSc SINE Alu -15 294 1 5611 44 0 0 chrX 19056025 19056702 -157917438 + L1PA6 LINE L1 5478 6154 0 405 229 101 22 chrX 19056908 19057087 -157917053 + AluJo SINE Alu 93 285 -27 1548 136 81 20 chrX 19057114 19057409 -157916731 - Tigger1 DNA MER2_type -187 2231 1919 1535 136 0 8 chrX 19057409 19057645 -157916495 + AluSg/x SINE Alu 78 311 -1 2776 106 16 31 chrX 19057645 19057865 -157916275 - Tigger1 DNA MER2_type -1391 1027 805 2311 91 13 0 chrX 19057865 19058174 -157915966 - AluSp SINE Alu 0 313 1 2776 106 16 31 chrX 19058174 19058406 -157915734 - Tigger1 DNA MER2_type -1613 805 582 255 61 0 0 chrX 19060096 19060129 -157914011 + (CATCT)n Simple_repeat Simple_repeat 3 35 0 1246 171 49 4 chrX 19060136 19060400 -157913740 + MER33 DNA MER1_type 1 276 -48 643 142 104 0 chrX 19060689 19060795 -157913345 - MER1B DNA MER1_type -180 117 1 1618 223 9 52 chrX 19060797 19061218 -157912922 + MER92B LTR ERV1 92 494 -142 932 112 0 0 chrX 19061218 19061230 -157912910 - L1MA8 LINE L1 -339 5952 5941 793 223 159 0 chrX 19061230 19061450 -157912690 - L1MA9 LINE L1 -226 5940 5686 666 205 8 16 chrX 19061453 19061702 -157912438 + L1MA9 LINE L1 5948 6290 -22 644 225 7 0 chrX 19061739 19061877 -157912263 + GA-rich Low_complexity Low_complexity 2 140 0 334 266 86 22 chrX 19061880 19062019 -157912121 + MER92B LTR ERV1 485 632 -4 352 175 0 0 chrX 19062234 19062310 -157911830 + L1MB7 LINE L1 6066 6141 -39 2288 98 0 0 chrX 19062319 19062624 -157911516 + AluY SINE Alu 1 305 -6 1562 212 40 8 chrX 19062628 19063029 -157911111 + L1 LINE L1 2683 3096 -3050 6081 43 7 1 chrX 19063460 19064632 -157909508 + L1PA5 LINE L1 4827 6004 -150 729 294 208 28 chrX 19064884 19065875 -157908265 + L2 LINE L2 994 2162 -1152 21 0 0 0 chrX 19066007 19066028 -157908112 + AT_rich Low_complexity Low_complexity 1 21 0 244 289 12 24 chrX 19066640 19066723 -157907417 + MLT1G1-int LTR MaLR 1028 1109 -262 1182 248 121 76 chrX 19067012 19067581 -157906559 + MLT1G1 LTR MaLR 1 595 0 326 345 14 7 chrX 19067984 19068123 -157906017 + L3b LINE CR1 1294 1433 -150 294 350 35 26 chrX 19068378 19068570 -157905570 + MIR SINE MIR 38 235 -27 236 261 115 39 chrX 19068770 19068900 -157905240 + MIR SINE MIR 67 206 -56 849 302 72 104 chrX 19068949 19070034 -157904106 - L3 LINE CR1 -127 1450 401 1015 31 79 0 chrX 19070108 19070235 -157903905 - MER85 DNA T2_type -2 137 1 21 36 0 0 chrX 19070783 19070811 -157903329 + AT_rich Low_complexity Low_complexity 1 28 0 188 417 48 0 chrX 19071078 19071162 -157902978 - L2 LINE L2 -31 3241 3154 34 24 0 0 chrX 19071742 19071783 -157902357 + AT_rich Low_complexity Low_complexity 1 41 0 725 294 73 63 chrX 19071791 19071832 -157902308 - LTR33A LTR ERVL -35 488 449 2224 118 49 0 chrX 19071832 19072179 -157901961 + THE1B LTR MaLR 1 364 0 725 294 73 63 chrX 19072179 19072614 -157901526 - LTR33A LTR ERVL -74 449 7 22 0 0 0 chrX 19072839 19072861 -157901279 + AT_rich Low_complexity Low_complexity 1 22 0 7058 65 9 0 chrX 19072992 19074309 -157899831 - L1PA7 LINE L1 -2 6152 4820 251 222 0 14 chrX 19274317 19274389 -157699751 + (TA)n Simple_repeat Simple_repeat 1 71 0 254 283 0 22 chrX 19274389 19274481 -157699659 + L1MC4 LINE L1 6614 6703 -1339 271 281 0 0 chrX 19274514 19274603 -157699537 + L1MC4 LINE L1 6615 6703 -1339 2308 138 22 0 chrX 19275428 19275784 -157698356 + THE1B LTR MaLR 1 364 0 312 91 0 0 chrX 19276442 19276486 -157697654 + (CA)n Simple_repeat Simple_repeat 2 45 0 31 44 0 0 chrX 19276983 19277028 -157697112 + AT_rich Low_complexity Low_complexity 1 45 0 234 156 0 0 chrX 19277029 19277074 -157697066 + GA-rich Low_complexity Low_complexity 4 48 0 308 312 95 62 chrX 19277381 19277769 -157696371 + L1ME4a LINE L1 4501 4901 -1245 1543 137 98 31 chrX 19277815 19278169 -157695971 + MSTA LTR MaLR 3 428 0 32 26 0 0 chrX 19278219 19278258 -157695882 + AT_rich Low_complexity Low_complexity 1 39 0 2233 115 0 6 chrX 19278386 19278698 -157695442 + AluSx SINE Alu 3 312 0 262 180 75 76 chrX 19278877 19279047 -157695093 + L1P5 LINE L1 5319 5489 -693 * 551 281 102 20 chrX 19279042 19279337 -157694803 + L1ME4a LINE L1 5509 5827 -294 581 279 80 63 chrX 19279431 19280093 -157694047 - L1MEc LINE L1 -3334 2881 2209 1896 97 19 59 chrX 19280134 19280454 -157693686 - AluSq SINE Alu -6 307 1 308 236 11 56 chrX 19280684 19280773 -157693367 + L2 LINE L2 3195 3279 -34 595 272 91 55 chrX 19280864 19281227 -157692913 - L1MEc LINE L1 -4642 1754 1405 2063 86 7 4 chrX 19281227 19281539 -157692601 - AluSg SINE Alu 0 313 1 595 272 91 55 chrX 19281539 19281902 -157692238 - L1MEc LINE L1 -4991 1405 1001 183 205 0 0 chrX 19282095 19282134 -157692006 + CT-rich Low_complexity Low_complexity 3 41 0 2918 81 74 25 chrX 19282258 19282690 -157691450 - MLT2A2 LTR ERVL 0 453 1 702 197 40 0 chrX 19282701 19282853 -157691287 + L1MA10 LINE L1 6170 6327 -7 278 314 39 58 chrX 19282967 19283174 -157690966 + L1ME4a LINE L1 5610 5812 -309 393 282 28 7 chrX 19283276 19283418 -157690722 + L1ME4a LINE L1 5968 6112 -9 6928 184 14 12 chrX 19284767 19286957 -157687183 - L1PA16 LINE L1 -179 5987 3798 3135 227 8 8 chrX 19286956 19287740 -157686400 + L1PA16 LINE L1 3014 3797 -2349 * 551 309 149 29 chrX 19288667 19289042 -157685098 - MLT1L LTR MaLR -6 609 190 236 290 14 0 chrX 19289463 19289532 -157684608 + MLT1J LTR MaLR 109 178 -333 24 77 0 0 chrX 19290975 19291027 -157683113 + AT_rich Low_complexity Low_complexity 1 52 0 194 192 0 14 chrX 19291067 19291140 -157683000 + (TA)n Simple_repeat Simple_repeat 1 72 0 214 377 49 0 chrX 19291772 19291833 -157682307 - MIR SINE MIR -184 78 15 2289 76 0 3 chrX 19292194 19292485 -157681655 + AluY SINE Alu 20 309 -2 21 0 0 0 chrX 19293551 19293572 -157680568 + AT_rich Low_complexity Low_complexity 1 21 0 225 330 39 29 chrX 19293690 19293793 -157680347 + L2 LINE L2 3209 3312 -1 485 268 56 45 chrX 19295186 19295365 -157678775 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chrX 19295432 19295453 -157678687 + AT_rich Low_complexity Low_complexity 1 21 0 983 245 100 10 chrX 19296773 19297083 -157677057 - MER58B DNA MER1_type 0 341 4 304 389 26 10 chrX 19297119 19297312 -157676828 - MIR SINE MIR -64 198 3 499 239 55 0 chrX 19297437 19297546 -157676594 - MER5A DNA MER1_type -13 176 62 3794 183 67 12 chrX 19297559 19298317 -157675823 - L1MB7 LINE L1 -23 6161 5362 412 125 0 0 chrX 19298317 19298381 -157675759 - MER5A DNA MER1_type -125 64 1 585 315 98 20 chrX 19298490 19298795 -157675345 - L2 LINE L2 -4 3309 2981 876 257 33 5 chrX 19298811 19299021 -157675119 + MIR SINE MIR 19 234 -28 328 263 13 0 chrX 19299029 19299105 -157675035 + MER69 DNA AcHobo 2 78 -1148 1018 278 142 34 chrX 19299229 19299819 -157674321 - L2 LINE L2 -339 2975 2322 514 99 0 0 chrX 19299984 19300055 -157674085 - MER39 LTR ERV1 -378 329 259 * 540 129 14 121 chrX 19300030 19300170 -157673970 - MER21A LTR ERV1 -733 198 74 495 0 0 0 chrX 19300322 19300377 -157673763 + (CA)n Simple_repeat Simple_repeat 2 56 0 185 277 223 0 chrX 19300498 19300610 -157673530 + L2 LINE L2 3176 3312 -1 244 385 71 12 chrX 19300719 19300888 -157673252 + MIR SINE MIR 28 206 -56 2296 76 0 13 chrX 19301614 19301917 -157672223 - AluSq SINE Alu -14 299 1 253 214 186 0 chrX 19302217 19302287 -157671853 + L2 LINE L2 3195 3277 -36 193 313 68 62 chrX 19302529 19302705 -157671435 - L2 LINE L2 -265 3007 2831 195 69 0 0 chrX 19303856 19303885 -157670255 + (T)n Simple_repeat Simple_repeat 1 29 0 393 256 80 24 chrX 19304846 19304971 -157669169 + MER117 DNA MER1_type 19 150 -47 207 355 58 0 chrX 19304993 19305114 -157669026 - L3 LINE CR1 -282 1295 1168 198 0 0 0 chrX 19305657 19305679 -157668461 + (T)n Simple_repeat Simple_repeat 1 22 0 390 185 12 0 chrX 19306406 19306487 -157667653 - L1MA8 LINE L1 -10 6281 6200 4395 173 48 29 chrX 19306488 19307347 -157666793 - L1 LINE L1 -2311 3835 2951 2366 92 0 0 chrX 19307347 19307653 -157666487 - AluSc SINE Alu -3 306 1 4395 173 48 29 chrX 19307653 19307831 -157666309 - L1 LINE L1 -3195 2951 2778 632 280 76 18 chrX 19307894 19308119 -157666021 - MIR SINE MIR -24 238 1 2190 78 14 14 chrX 19308142 19308438 -157665702 + AluY SINE Alu 1 296 -15 312 172 0 0 chrX 19308438 19308496 -157665644 + (TA)n Simple_repeat Simple_repeat 1 58 0 350 315 74 0 chrX 19308523 19308672 -157665468 - MIR SINE MIR -3 259 100 25 0 0 0 chrX 19308981 19309006 -157665134 + AT_rich Low_complexity Low_complexity 1 25 0 893 294 41 32 chrX 19309879 19310223 -157663917 - MLT1H LTR MaLR 0 549 203 362 270 10 20 chrX 19310397 19310497 -157663643 + MIR SINE MIR 156 254 -8 1467 153 6 102 chrX 19310782 19311128 -157663012 + AluJo SINE Alu 1 316 0 210 337 56 11 chrX 19312711 19312800 -157661340 - L2 LINE L2 -12 3260 3168 1913 212 63 52 chrX 19312957 19313513 -157660627 - MER68 LTR ERV1 0 562 1 1469 225 25 3 chrX 19314641 19314957 -157659183 - MLT1D LTR MaLR -2 503 181 1195 163 41 41 chrX 19314970 19315215 -157658925 - MLT1D LTR MaLR -260 245 1 780 230 75 58 chrX 19315304 19315582 -157658558 - L2 LINE L2 0 3313 3031 419 189 33 0 chrX 19315585 19315669 -157658471 + MLT1C LTR MaLR 1 87 -380 1495 192 120 0 chrX 19315669 19315977 -157658163 - MER2 DNA MER2_type 0 345 1 1333 186 98 55 chrX 19315982 19316348 -157657792 + MLT1C LTR MaLR 86 467 0 481 312 84 25 chrX 19316348 19316606 -157657534 - L2 LINE L2 -281 3032 2765 2618 114 39 0 chrX 19316847 19317259 -157656881 - MSTA LTR MaLR 0 428 1 247 130 0 0 chrX 19317934 19317980 -157656160 - LTR66 LTR ERVL -171 439 394 227 435 2 0 chrX 19318492 19318626 -157655514 + MIR SINE MIR 10 145 -63 225 316 0 53 chrX 19319853 19319929 -157654211 + MIR SINE MIR 24 95 -113 2048 139 0 3 chrX 19319937 19320231 -157653909 - AluSx SINE Alu -15 297 5 796 308 70 30 chrX 19320520 19321067 -157653073 - L2 LINE L2 -33 3280 2714 21 0 0 0 chrX 19324357 19324378 -157649762 + AT_rich Low_complexity Low_complexity 1 21 0 1034 170 178 35 chrX 19324381 19324640 -157649500 + AluJb SINE Alu 1 296 -6 21 0 0 0 chrX 19325606 19325627 -157648513 + AT_rich Low_complexity Low_complexity 1 21 0 514 328 39 35 chrX 19325724 19325956 -157648184 + MIR SINE MIR 29 261 -1 479 200 32 11 chrX 19325965 19326060 -157648080 + AluS SINE Alu 1 97 -216 216 0 0 0 chrX 19326064 19326088 -157648052 + (CA)n Simple_repeat Simple_repeat 1 24 0 987 221 67 30 chrX 19327517 19327815 -157646325 - MER46C DNA MER2_type -29 309 1 2246 217 60 10 chrX 19328772 19329288 -157644852 - MER34 LTR ERV1 0 542 1 371 214 0 79 chrX 19329912 19330001 -157644139 + MER96 DNA MER1_type? 94 175 0 274 317 140 21 chrX 19330065 19330393 -157643747 + L2 LINE L2 1909 2275 -1039 3694 55 4 2 chrX 19331533 19332005 -157642135 - L1PA7 LINE L1 -4 6150 5678 641 287 0 13 chrX 19332436 19332593 -157641547 + MER5B DNA MER1_type 24 178 0 910 99 0 14 chrX 19332734 19332875 -157641265 + L1PB1 LINE L1 6012 6150 -1 1220 121 204 57 chrX 19333085 19333350 -157640790 + AluJo SINE Alu 1 304 -8 21 36 0 0 chrX 19333809 19333837 -157640303 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrX 19334138 19334158 -157639982 + (A)n Simple_repeat Simple_repeat 1 20 0 636 202 90 85 chrX 19334878 19334953 -157639187 - MER5A DNA MER1_type 0 189 116 2387 97 0 0 chrX 19334953 19335253 -157638887 - AluSg SINE Alu -10 300 1 636 202 90 85 chrX 19335253 19335365 -157638775 - MER5A DNA MER1_type -73 116 1 447 271 8 0 chrX 19335399 19335517 -157638623 + MER103 DNA DNA 2 120 -46 2190 105 6 40 chrX 19336795 19337118 -157637022 - AluSx SINE Alu 0 312 1 535 324 82 11 chrX 19337392 19337673 -157636467 - L2 LINE L2 0 3313 3013 274 339 0 0 chrX 19338072 19338181 -157635959 - MIR SINE MIR -4 258 150 24 53 0 0 chrX 19338292 19338330 -157635810 + AT_rich Low_complexity Low_complexity 1 38 0 1357 204 87 32 chrX 19338458 19338802 -157635338 + MLT1A1 LTR MaLR 3 365 0 243 318 0 0 chrX 19339681 19339744 -157634396 + L2 LINE L2 3206 3268 -4 2016 211 44 32 chrX 19342038 19342536 -157631604 - MLT1D LTR MaLR -1 504 1 2259 97 3 0 chrX 19342891 19343189 -157630951 - AluSg SINE Alu -11 299 1 800 182 61 7 chrX 19343602 19343750 -157630390 + MLT1A1 LTR MaLR 11 166 -199 1529 227 40 20 chrX 19344535 19344883 -157629257 + MLT1A1 LTR MaLR 11 365 0 284 327 94 6 chrX 19346597 19346756 -157627384 + MER5A DNA MER1_type 17 189 0 234 256 212 15 chrX 19347085 19347222 -157626918 + MIR SINE MIR 79 242 -20 353 333 8 30 chrX 19349068 19349200 -157624940 + L2 LINE L2 3185 3313 0 1986 219 14 32 chrX 19350012 19350510 -157623630 + L1ME1 LINE L1 5584 6072 -94 351 0 0 0 chrX 19350521 19350527 -157623613 + (TG)n Simple_repeat Simple_repeat 1 45 0 351 0 0 0 chrX 19350527 19350566 -157623574 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 51 0 0 chrX 19350665 19350704 -157623436 + AT_rich Low_complexity Low_complexity 1 39 0 1262 62 0 23 chrX 19352719 19352896 -157621244 - L1MA1 LINE L1 0 6302 6130 503 314 41 17 chrX 19353473 19353645 -157620495 + MIR SINE MIR 9 184 -78 1111 223 0 22 chrX 19353659 19353883 -157620257 - MER58A DNA MER1_type -5 219 1 1978 280 172 16 chrX 19355463 19356672 -157617468 + L2 LINE L2 1897 3296 -17 1884 139 0 27 chrX 19356701 19356995 -157617145 + AluJo SINE Alu 4 289 -23 2257 114 0 0 chrX 19359396 19359693 -157614447 - AluSx SINE Alu -15 297 1 286 319 15 15 chrX 19360775 19360910 -157613230 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 250 165 33 22 chrX 19361079 19361170 -157612970 + (TA)n Simple_repeat Simple_repeat 1 92 0 200 238 79 16 chrX 19362108 19362171 -157611969 - MER5A DNA MER1_type 0 189 123 493 295 21 47 chrX 19364274 19364467 -157609673 - MIR SINE MIR -8 254 67 2329 78 17 0 chrX 19365999 19366293 -157607847 - AluSx SINE Alu -13 299 1 2075 88 27 31 chrX 19366438 19366732 -157607408 + AluSx SINE Alu 1 293 -19 185 268 0 54 chrX 19366814 19366870 -157607270 - L2 LINE L2 0 3313 3261 * 314 317 188 0 chrX 19366869 19367055 -157607085 - L2 LINE L2 -901 2413 2193 236 157 20 20 chrX 19367560 19367611 -157606529 - MLT2F LTR ERVL 0 663 613 465 228 61 0 chrX 19367683 19367797 -157606343 - MLT2F LTR ERVL -64 599 479 921 296 61 13 chrX 19367886 19368197 -157605943 - MLT2F LTR ERVL -337 326 1 28 0 0 0 chrX 19369153 19369181 -157604959 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 19369980 19370002 -157604138 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chrX 19370290 19370310 -157603830 + (TG)n Simple_repeat Simple_repeat 2 21 0 2401 81 0 0 chrX 19370715 19371013 -157603127 - AluSx SINE Alu -14 298 1 1131 295 50 29 chrX 19372045 19372530 -157601610 - MLT1J LTR MaLR -16 495 1 195 114 0 0 chrX 19373805 19373840 -157600300 + (TAA)n Simple_repeat Simple_repeat 3 37 0 225 0 0 0 chrX 19374329 19374354 -157599786 + (TG)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chrX 19374353 19374375 -157599765 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 7112 49 19 10 chrX 19375525 19376816 -157597324 - L1PA8 LINE L1 -2 6170 4876 1053 205 82 72 chrX 19376932 19377260 -157596880 - LTR37A LTR ERV1 -8 418 84 2203 58 4 0 chrX 19377260 19377534 -157596606 + AluY SINE Alu 37 311 0 1053 205 82 72 chrX 19377534 19377619 -157596521 - LTR37A LTR ERV1 -342 84 1 223 253 63 42 chrX 19377896 19377991 -157596149 - MER5A DNA MER1_type -13 176 80 * 246 256 0 81 chrX 19377910 19377996 -157596144 + MER5A DNA MER1_type 43 121 -68 576 135 62 0 chrX 19379397 19379493 -157594647 + FLAM_A SINE Alu 18 119 -23 189 0 0 0 chrX 19379493 19379514 -157594626 + (TA)n Simple_repeat Simple_repeat 2 22 0 1586 141 0 155 chrX 19380210 19380571 -157593569 + AluJo SINE Alu 1 305 -7 1111 216 0 22 chrX 19380585 19380858 -157593282 + L1MB7 LINE L1 4323 4589 -1557 4242 99 65 3 chrX 19380858 19381513 -157592627 + L1PA15 LINE L1 5467 6164 -1 21 0 0 0 chrX 19381883 19381904 -157592236 + AT_rich Low_complexity Low_complexity 1 21 0 3360 150 120 26 chrX 19381925 19382606 -157591534 + L1MB7 LINE L1 5431 6175 -9 2712 195 80 8 chrX 19382680 19383291 -157590849 + MER63C DNA MER1_type 254 908 -22 184 320 22 82 chrX 19383471 19383702 -157590438 - L2 LINE L2 0 3313 3097 315 203 0 0 chrX 19384509 19384578 -157589562 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 23 33 0 0 chrX 19385660 19385690 -157588450 + AT_rich Low_complexity Low_complexity 1 30 0 228 35 0 0 chrX 19385806 19385835 -157588305 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 2055 106 3 14 chrX 19386131 19386414 -157587726 + AluSg SINE Alu 1 280 -30 21 71 0 0 chrX 19386824 19386866 -157587274 + AT_rich Low_complexity Low_complexity 1 42 0 5232 14 0 0 chrX 19386866 19387459 -157586681 - L1PA2 LINE L1 0 6155 5563 554 0 0 0 chrX 19387459 19387522 -157586618 + L1PA2 LINE L1 5487 5549 -606 742 233 0 6 chrX 19388212 19388375 -157585765 + L1MD3 LINE L1 7502 7663 -332 2058 151 0 0 chrX 19388958 19389262 -157584878 + AluSx SINE Alu 1 304 -8 243 0 0 0 chrX 19389262 19389289 -157584851 + (TA)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chrX 19389348 19389375 -157584765 + AT_rich Low_complexity Low_complexity 1 27 0 2205 56 8 0 chrX 19389378 19389644 -157584496 + AluSq SINE Alu 37 304 -9 591 301 68 16 chrX 19391362 19391611 -157582529 + MIR SINE MIR 1 262 0 2316 116 0 0 chrX 19391630 19391941 -157582199 + AluSx SINE Alu 1 311 -1 607 289 253 14 chrX 19392729 19393089 -157581051 - L3 LINE CR1 -15 1562 1117 1151 242 8 4 chrX 19395072 19395320 -157578820 + MIR SINE MIR 12 260 -2 231 270 95 14 chrX 19395533 19395607 -157578533 - L2 LINE L2 0 3272 3193 297 0 0 0 chrX 19396530 19396563 -157577577 + (T)n Simple_repeat Simple_repeat 1 33 0 1704 164 32 39 chrX 19396646 19396957 -157577183 - AluJo SINE Alu -3 309 1 854 86 0 0 chrX 19397130 19397235 -157576905 - AluSg/x SINE Alu -16 293 189 1175 167 28 9 chrX 19397746 19397961 -157576179 - MER20 DNA MER1_type 0 219 1 347 268 239 14 chrX 19398198 19398340 -157575800 - MER5A DNA MER1_type 0 189 16 309 183 0 0 chrX 19399006 19399066 -157575074 + GA-rich Low_complexity Low_complexity 2 61 0 314 167 0 33 chrX 19399673 19399733 -157574407 - L2 LINE L2 -2 3270 3213 217 297 67 19 chrX 19400388 19400493 -157573647 + MIR SINE MIR 34 144 -64 187 271 119 0 chrX 19402287 19402346 -157571794 + MIR SINE MIR 197 262 0 294 302 36 50 chrX 19402354 19402493 -157571647 + L2 LINE L2 3116 3252 -20 1930 55 35 0 chrX 19402652 19402909 -157571231 + L1PA7 LINE L1 5888 6153 -1 214 333 69 0 chrX 19403138 19403225 -157570915 - L2 LINE L2 -2 3311 3219 691 288 57 40 chrX 19403253 19403552 -157570588 - L2 LINE L2 -86 3227 2924 2555 215 119 69 chrX 19404096 19405092 -157569048 - L1MC4 LINE L1 0 8042 6997 26 0 0 0 chrX 19405509 19405535 -157568605 + AT_rich Low_complexity Low_complexity 1 26 0 369 0 0 0 chrX 19406090 19406131 -157568009 + (CA)n Simple_repeat Simple_repeat 2 42 0 2085 244 40 19 chrX 19408162 19408784 -157565356 - L1ME2 LINE L1 -6 6158 5524 2459 77 0 0 chrX 19409433 19409732 -157564408 - AluSx SINE Alu -11 301 3 2339 94 0 3 chrX 19412191 19412490 -157561650 - AluSq SINE Alu -13 300 3 534 288 58 29 chrX 19412880 19413085 -157561055 - MIR SINE MIR -33 229 19 211 271 0 0 chrX 19416202 19416250 -157557890 + (TG)n Simple_repeat Simple_repeat 1 48 0 186 294 212 12 chrX 19417456 19417541 -157556599 - MIR3 SINE MIR -105 103 2 208 309 0 0 chrX 19417609 19417664 -157556476 - L2 LINE L2 -12 3301 3247 195 42 0 0 chrX 19418534 19418558 -157555582 + (A)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chrX 19418919 19418948 -157555192 + AT_rich Low_complexity Low_complexity 1 29 0 392 271 66 8 chrX 19419157 19419279 -157554861 + L3b LINE CR1 1230 1358 -225 642 247 133 0 chrX 19420172 19420338 -157553802 + MER5A DNA MER1_type 1 188 -1 2568 52 0 7 chrX 19420370 19420677 -157553463 - AluY SINE Alu -6 305 1 21 0 0 0 chrX 19422233 19422254 -157551886 + AT_rich Low_complexity Low_complexity 1 21 0 2436 94 0 0 chrX 19423654 19423963 -157550177 + AluSx SINE Alu 2 310 -2 198 0 0 0 chrX 19426028 19426050 -157548090 + (A)n Simple_repeat Simple_repeat 1 22 0 273 75 0 0 chrX 19426353 19426393 -157547747 + (TA)n Simple_repeat Simple_repeat 1 40 0 324 125 0 0 chrX 19426393 19426457 -157547683 + (A)n Simple_repeat Simple_repeat 1 64 0 21 0 0 0 chrX 19426965 19426986 -157547154 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chrX 19427402 19427429 -157546711 + (CA)n Simple_repeat Simple_repeat 1 27 0 309 51 0 0 chrX 19430599 19430638 -157543502 + (TG)n Simple_repeat Simple_repeat 2 40 0 401 118 118 0 chrX 19432921 19432989 -157541151 + AluS SINE Alu 1 76 -227 2393 93 0 10 chrX 19433056 19433367 -157540773 + AluSg SINE Alu 1 308 -2 386 287 70 32 chrX 19434617 19434774 -157539366 + MER5B DNA MER1_type 15 177 -1 350 255 155 37 chrX 19434786 19434947 -157539193 - MER5A DNA MER1_type -7 182 3 21 57 0 0 chrX 19435379 19435414 -157538726 + AT_rich Low_complexity Low_complexity 1 35 0 260 118 0 20 chrX 19437721 19437772 -157536368 + (TA)n Simple_repeat Simple_repeat 2 51 0 2388 71 0 0 chrX 19437894 19438189 -157535951 + AluY SINE Alu 5 299 -12 232 286 0 44 chrX 19440058 19440149 -157533991 + MIR SINE MIR 69 155 -107 418 332 48 78 chrX 19440206 19440619 -157533521 - L2 LINE L2 -29 3284 2884 2333 90 0 10 chrX 19440621 19440922 -157533218 + AluSg SINE Alu 1 298 -12 243 0 0 0 chrX 19440996 19441023 -157533117 + (TG)n Simple_repeat Simple_repeat 2 28 0 2380 75 0 7 chrX 19441159 19441464 -157532676 - AluY SINE Alu -8 303 1 525 258 138 79 chrX 19441829 19442337 -157531803 - MLT1H LTR MaLR -4 545 1 5450 95 20 1 chrX 19443866 19444668 -157529472 - L1MA3 LINE L1 0 7724 6908 2705 62 122 5 chrX 19444668 19445069 -157529071 + LTR7 LTR ERV1 1 448 -2 3040 103 9 21 chrX 19445071 19445536 -157528604 + HERVH LTR ERV1 1 459 -7254 14598 135 67 39 chrX 19445590 19448703 -157525437 + HERVH LTR ERV1 793 3993 -3720 4449 133 1 1 chrX 19448705 19449364 -157524776 + HERVH LTR ERV1 4488 5146 -2567 1332 151 18 0 chrX 19449364 19449583 -157524557 + HERVH LTR ERV1 5597 5819 -1894 * 2490 82 48 13 chrX 19449581 19449960 -157524180 + HERVH LTR ERV1 7322 7713 0 2614 86 98 5 chrX 19449962 19450370 -157523770 + LTR7 LTR ERV1 3 448 -2 1744 155 10 0 chrX 19450372 19450858 -157523282 - L1MA3 LINE L1 -743 6822 6421 * 40659 36 1 1 chrX 19450853 19457007 -157517133 - L1PA3 LINE L1 0 6155 1 12641 169 52 18 chrX 19457008 19458135 -157516005 - L1MA3 LINE L1 -1133 6432 5345 1964 125 0 7 chrX 19458135 19458416 -157515724 - AluSx SINE Alu -4 308 30 12641 169 52 18 chrX 19458416 19458433 -157515707 - L1MA3 LINE L1 -2220 5345 5330 2210 99 3 0 chrX 19458433 19458740 -157515400 - AluSq SINE Alu 0 308 1 12641 169 52 18 chrX 19458740 19461928 -157512212 - L1MA3 LINE L1 -2235 5330 16 314 263 149 0 chrX 19462007 19462121 -157512019 + MIR SINE MIR 59 189 -73 557 298 105 41 chrX 19463935 19464230 -157509910 - MLT1J2 LTR MaLR -16 434 121 1423 277 30 13 chrX 19464265 19464658 -157509482 - LTR16A LTR ERVL -35 415 16 2261 93 10 6 chrX 19464901 19465212 -157508928 - AluSx SINE Alu 0 312 1 25 31 0 0 chrX 19465307 19465339 -157508801 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chrX 19465420 19465469 -157508671 + AT_rich Low_complexity Low_complexity 1 49 0 1494 281 115 35 chrX 19466322 19466694 -157507446 - MLT1E LTR MaLR 0 593 161 303 49 0 0 chrX 19466694 19466735 -157507405 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 1494 281 115 35 chrX 19466735 19466911 -157507229 - MLT1E LTR MaLR -432 161 1 1612 99 9 0 chrX 19467100 19467321 -157506819 + L1MA1 LINE L1 6080 6302 0 271 202 90 0 chrX 19468379 19468468 -157505672 - LTR37A LTR ERV1 -2 424 328 1563 222 25 18 chrX 19468482 19468879 -157505261 - LTR37B LTR ERV1 -63 405 6 1674 202 27 21 chrX 19468942 19469279 -157504861 - MER58B DNA MER1_type -1 340 2 28 79 0 0 chrX 19470596 19470659 -157503481 + AT_rich Low_complexity Low_complexity 1 63 0 269 325 118 61 chrX 19471490 19471702 -157502438 - MLT1H LTR MaLR -207 342 119 190 191 149 0 chrX 19471923 19471970 -157502170 - L2 LINE L2 -5 3308 3255 340 295 15 60 chrX 19472160 19472360 -157501780 + LTR16B LTR ERVL 274 464 0 503 308 27 11 chrX 19472904 19473089 -157501051 - MER117 DNA MER1_type -8 189 2 761 308 36 42 chrX 19474062 19474397 -157499743 + LTR16B LTR ERVL 131 463 -1 260 282 0 14 chrX 19476035 19476106 -157498034 - LTR33A LTR ERVL -6 517 448 243 270 45 54 chrX 19476298 19476409 -157497731 - MLT2E LTR ERVL -480 148 39 21 36 0 0 chrX 19476923 19476951 -157497189 + AT_rich Low_complexity Low_complexity 1 28 0 206 291 0 0 chrX 19477617 19477672 -157496468 + GA-rich Low_complexity Low_complexity 1 55 0 1385 133 59 30 chrX 19478267 19478538 -157495602 + THE1C LTR MaLR 94 372 -3 431 311 71 5 chrX 19478540 19478736 -157495404 - MIR SINE MIR -7 255 47 478 263 156 8 chrX 19478814 19479127 -157495013 + MLT1G1 LTR MaLR 1 304 -226 349 248 174 0 chrX 19479159 19479268 -157494872 + MLT1G1 LTR MaLR 279 406 -136 1653 274 171 4 chrX 19479573 19480081 -157494059 - MLT1E LTR MaLR 0 593 1 1128 286 48 23 chrX 19480150 19480446 -157493694 + L2 LINE L2 2911 3221 -92 2223 97 17 0 chrX 19480446 19480744 -157493396 + AluSc SINE Alu 1 303 -6 1128 286 48 23 chrX 19480744 19480839 -157493301 + L2 LINE L2 3221 3312 -1 4234 33 8 0 chrX 19481181 19481694 -157492446 + L1P LINE L1 3261 3777 -2369 240 150 46 31 chrX 19481794 19481859 -157492281 + L1MC4 LINE L1 2006 6983 -1339 255 250 0 62 chrX 19481860 19481956 -157492184 - L1MC4 LINE L1 -1339 6703 6614 * 265 311 0 0 chrX 19481932 19482022 -157492118 + L1MC4 LINE L1 6614 6703 -1339 226 286 0 24 chrX 19481994 19482078 -157492062 - L1MC4 LINE L1 -1339 6703 6622 * 1065 145 0 0 chrX 19482078 19482257 -157491883 + (TA)n Simple_repeat Simple_repeat 2 180 0 301 285 60 20 chrX 19482292 19482443 -157491697 - L1M4 LINE L1 -2952 3194 3038 642 149 0 75 chrX 19482486 19482647 -157491493 + MER5C DNA MER1_type 176 324 0 566 0 0 92 chrX 19483925 19484012 -157490128 + (T)n Simple_repeat Simple_repeat 1 79 0 243 0 0 0 chrX 19484162 19484189 -157489951 + (T)n Simple_repeat Simple_repeat 1 27 0 26 30 0 0 chrX 19484335 19484368 -157489772 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chrX 19484394 19484430 -157489710 + AT_rich Low_complexity Low_complexity 1 36 0 333 82 0 0 chrX 19484649 19484698 -157489442 + (CA)n Simple_repeat Simple_repeat 2 50 0 2539 58 0 43 chrX 19484858 19485185 -157488955 + AluSp SINE Alu 1 313 0 369 0 0 0 chrX 19485202 19485243 -157488897 + (A)n Simple_repeat Simple_repeat 1 41 0 368 252 92 8 chrX 19486442 19486561 -157487579 + L1ME4a LINE L1 5992 6120 -1 1785 63 41 0 chrX 19487596 19487817 -157486323 - AluY SINE Alu -81 230 1 23 0 0 0 chrX 19487818 19487841 -157486299 + AT_rich Low_complexity Low_complexity 1 23 0 1229 188 9 125 chrX 19487841 19488177 -157485963 - AluJb SINE Alu -3 299 3 2311 91 7 0 chrX 19488181 19488479 -157485661 - AluSx SINE Alu -12 300 1 1811 139 42 0 chrX 19488479 19488766 -157485374 - AluJb SINE Alu -13 299 1 237 271 0 0 chrX 19488767 19488837 -157485303 + L1MB7 LINE L1 6115 6184 0 1690 133 70 11 chrX 19488895 19489166 -157484974 - AluJb SINE Alu -24 288 2 26 0 0 0 chrX 19489549 19489575 -157484565 + AT_rich Low_complexity Low_complexity 1 26 0 1977 150 0 0 chrX 19489575 19489861 -157484279 - AluSx SINE Alu -26 286 1 1625 156 20 20 chrX 19489864 19490159 -157483981 - AluJb SINE Alu -17 295 1 21 36 0 0 chrX 19492042 19492070 -157482070 + AT_rich Low_complexity Low_complexity 1 28 0 798 66 16 74 chrX 19493365 19493486 -157480654 - AluY SINE Alu -196 115 2 951 134 11 34 chrX 19493487 19493666 -157480474 + L1MB4 LINE L1 6004 6178 -2 1183 177 163 24 chrX 19493680 19493974 -157480166 + L1MB5 LINE L1 5833 6167 -7 253 141 202 0 chrX 19495259 19495358 -157478782 + AluYa5 SINE Alu 15 133 -168 36 64 0 0 chrX 19496495 19496542 -157477598 + AT_rich Low_complexity Low_complexity 1 47 0 2101 30 0 0 chrX 19696638 19696874 -157277266 - AluY SINE Alu -75 236 1 371 186 25 17 chrX 19696910 19697028 -157277112 + CT-rich Low_complexity Low_complexity 2 120 0 394 260 41 32 chrX 19697124 19697247 -157276893 + MLT1H LTR MaLR 177 300 -249 210 195 52 52 chrX 19697278 19697355 -157276785 - L3 LINE CR1 -26 1551 1475 640 328 70 16 chrX 19697459 19697828 -157276312 - L2 LINE L2 -972 2342 1954 2799 242 54 13 chrX 19698263 19699097 -157275043 - MER97a DNA MER1_type? -12 882 15 229 250 16 16 chrX 19699410 19699474 -157274666 + Charlie7 DNA MER1_type 1800 1863 -749 261 83 0 0 chrX 19700252 19700288 -157273852 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 486 0 0 0 chrX 19700288 19700342 -157273798 + (TG)n Simple_repeat Simple_repeat 2 55 0 429 225 121 75 chrX 19700365 19700605 -157273535 - MLT1L LTR MaLR -353 262 12 1038 170 0 0 chrX 19700811 19700982 -157273158 + AluSg/x SINE Alu 137 307 -5 600 257 127 46 chrX 19701034 19701318 -157272822 + Charlie7 DNA MER1_type 50 356 -2256 * 1445 258 69 42 chrX 19701314 19701996 -157272144 + Charlie7 DNA MER1_type 1471 2170 -442 2191 120 0 0 chrX 19702130 19702430 -157271710 - AluSx SINE Alu -12 300 1 237 83 0 0 chrX 19702962 19702998 -157271142 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 2140 106 3 0 chrX 19703134 19703455 -157270685 + AluSq SINE Alu 1 322 0 292 287 72 29 chrX 19703928 19704137 -157270003 - MER31-int LTR ERV1 -3021 1915 1698 327 194 0 0 chrX 19704325 19704397 -157269743 + L1PB1 LINE L1 129 200 -6663 13807 178 35 15 chrX 19704397 19707954 -157266186 + L1PB1 LINE L1 634 4472 -2395 2494 66 3 0 chrX 19707954 19708256 -157265884 + AluSp SINE Alu 1 303 -10 13807 178 35 15 chrX 19708256 19710702 -157263438 + L1PB1 LINE L1 4472 6867 0 1063 209 117 33 chrX 19711622 19712014 -157262126 - LTR37A LTR ERV1 -1 425 1 186 334 68 60 chrX 19712436 19712789 -157261351 - L2 LINE L2 -2424 890 535 322 316 38 29 chrX 19713479 19713688 -157260452 + MIR SINE MIR 38 248 -14 1266 173 31 0 chrX 19715109 19715335 -157258805 + MSTA LTR MaLR 1 233 -195 1224 140 11 0 chrX 19715446 19715632 -157258508 + MSTA LTR MaLR 232 419 -9 348 284 169 22 chrX 19715652 19715835 -157258305 - MIR SINE MIR -13 249 40 455 248 0 34 chrX 19715989 19716106 -157258034 + L2 LINE L2 3200 3312 -1 237 333 197 27 chrX 19716267 19716414 -157257726 - MER5A DNA MER1_type -2 187 16 515 280 15 8 chrX 19717089 19717221 -157256919 + L2 LINE L2 3181 3313 0 1645 132 47 38 chrX 19717741 19718082 -157256058 - L1MA8 LINE L1 -3 6288 5945 5498 181 43 8 chrX 19718359 19719508 -157254632 + L1MB1 LINE L1 4127 5373 -795 216 67 0 0 chrX 19719508 19719538 -157254602 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 5498 181 43 8 chrX 19719538 19720363 -157253777 + L1MB1 LINE L1 5373 6167 -1 1403 277 29 50 chrX 19720376 19720553 -157253587 - L2 LINE L2 -1201 2113 1934 1621 169 4 4 chrX 19720553 19720813 -157253327 + AluJb SINE Alu 1 260 -52 1403 277 29 50 chrX 19720813 19721181 -157252959 - L2 LINE L2 -1380 1934 1579 6367 14 0 0 chrX 19721591 19722322 -157251818 - L1P LINE L1 -1409 4737 4007 6145 13 0 0 chrX 19722322 19723057 -157251083 + L1PA2 LINE L1 5460 6198 0 204 40 0 0 chrX 19723105 19723130 -157251010 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 939 289 53 7 chrX 19723326 19723610 -157250530 + MER110 LTR ERV1 188 484 -7 496 333 18 6 chrX 19723963 19724131 -157250009 + MIR3 SINE MIR 20 189 -19 25 0 0 0 chrX 19724149 19724174 -157249966 + AT_rich Low_complexity Low_complexity 1 25 0 299 254 0 93 chrX 19724777 19724895 -157249245 + MLT1H LTR MaLR 430 536 -13 464 195 81 86 chrX 19726430 19726604 -157247536 + MLT1H LTR MaLR 377 549 0 25 31 0 0 chrX 19726763 19726795 -157247345 + AT_rich Low_complexity Low_complexity 1 32 0 664 336 50 0 chrX 19726956 19727176 -157246964 - MIR SINE MIR -24 238 8 851 194 12 6 chrX 19727349 19727509 -157246631 - MER5B DNA MER1_type -17 161 1 388 265 107 52 chrX 19729128 19729287 -157244853 - MER5A DNA MER1_type -18 160 7 2041 217 72 25 chrX 19729686 19730215 -157243925 + MLT2B3 LTR ERVL 1 554 0 3583 144 46 0 chrX 19730215 19730820 -157243320 + MSTA-int LTR MaLR 1 633 -1018 1328 113 5 5 chrX 19730821 19731025 -157243115 + MSTA-int LTR MaLR 1448 1651 0 1862 139 144 51 chrX 19731028 19731417 -157242723 + MSTA LTR MaLR 4 428 0 1987 171 37 0 chrX 19732119 19732471 -157241669 + MLT1A1 LTR MaLR 1 365 0 270 277 20 20 chrX 19732669 19732770 -157241370 + MER103 DNA DNA 65 165 -1 216 245 57 0 chrX 19733462 19733515 -157240625 + L2 LINE L2 3258 3313 0 2350 56 0 7 chrX 19734162 19734468 -157239672 - AluY SINE Alu 0 304 1 188 205 0 0 chrX 19736019 19736058 -157238082 + MIR SINE MIR 77 115 -147 352 305 7 40 chrX 19738104 19738255 -157235885 - L1MCa LINE L1 -4835 1591 1446 251 280 30 50 chrX 19738255 19738355 -157235785 - HAL1 LINE L1 -1121 1386 1289 659 206 0 23 chrX 19738953 19739084 -157235056 - FLAM_A SINE Alu -5 137 10 2428 50 30 0 chrX 19739169 19739466 -157234674 + AluY SINE Alu 1 306 -5 278 288 18 63 chrX 19739492 19739714 -157234426 - L1ME LINE L1 -335 5829 5618 296 284 135 12 chrX 19739756 19739978 -157234162 - L1ME LINE L1 -659 5505 5258 1359 182 65 59 chrX 19740327 19740651 -157233489 + MLT1D LTR MaLR 180 505 0 2197 99 0 0 chrX 19742279 19742563 -157231577 - AluSq SINE Alu -29 284 1 454 288 135 35 chrX 19742839 19743199 -157230941 + MLT1J2 LTR MaLR 71 445 -5 29 28 0 0 chrX 19743761 19743797 -157230343 + AT_rich Low_complexity Low_complexity 1 36 0 1438 172 11 36 chrX 19744073 19744435 -157229705 - MER61B LTR ERV1 0 425 1 1137 191 89 36 chrX 19744832 19745368 -157228772 - LTR29 LTR ERV1 -2 607 1 213 337 96 0 chrX 19745629 19745712 -157228428 + MIR SINE MIR 166 256 -6 3264 128 15 89 chrX 19745756 19746415 -157227725 + MER4B LTR ERV1 1 610 0 302 246 54 77 chrX 19746666 19746796 -157227344 - MIR SINE MIR -1 261 135 2207 192 75 37 chrX 19747138 19747700 -157226440 - MER92B LTR ERV1 -52 584 2 505 313 45 0 chrX 19747831 19748010 -157226130 - MIR SINE MIR -34 228 42 1916 135 18 0 chrX 19748536 19748817 -157225323 - AluJb SINE Alu -26 286 1 298 318 99 30 chrX 19749203 19749436 -157224704 - MIR SINE MIR -6 256 8 513 328 59 0 chrX 19749474 19749660 -157224480 + MIR SINE MIR 62 258 -4 21 0 0 0 chrX 19749936 19749957 -157224183 + AT_rich Low_complexity Low_complexity 1 21 0 1527 179 92 158 chrX 19750266 19751036 -157223104 - LTR8A LTR ERV1 -8 719 1 278 281 16 0 chrX 19752083 19752147 -157221993 - MER5A DNA MER1_type -1 188 124 389 70 18 0 chrX 19752812 19752869 -157221271 + (TG)n Simple_repeat Simple_repeat 2 59 0 652 132 0 62 chrX 19752870 19752999 -157221141 - FLAM_C SINE Alu -14 129 9 186 71 0 0 chrX 19753054 19753082 -157221058 + (TC)n Simple_repeat Simple_repeat 1 28 0 273 163 0 0 chrX 19753520 19753569 -157220571 + (TG)n Simple_repeat Simple_repeat 2 50 0 324 238 10 20 chrX 19753618 19753719 -157220421 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 24 0 0 0 chrX 19753731 19753755 -157220385 + AT_rich Low_complexity Low_complexity 1 24 0 2127 175 61 51 chrX 19755072 19755581 -157218559 + MER67D LTR ERV1 1 514 0 1015 191 30 30 chrX 19755898 19756134 -157218006 - MER106A DNA MER1_type 0 236 1 274 227 31 31 chrX 19756138 19756235 -157217905 - HAL1b LINE L1 -56 1292 1196 536 263 108 44 chrX 19756325 19756735 -157217405 - L1ME LINE L1 -342 5779 5358 33 80 0 0 chrX 19756990 19757065 -157217075 + AT_rich Low_complexity Low_complexity 1 75 0 3201 170 40 58 chrX 19757752 19758500 -157215640 - L1MB7 LINE L1 -23 6161 5427 21 0 0 0 chrX 19760026 19760047 -157214093 + AT_rich Low_complexity Low_complexity 1 21 0 4866 253 52 22 chrX 19760277 19761840 -157212300 - L1MB7 LINE L1 -1922 4224 2615 377 306 102 42 chrX 19762195 19762457 -157211683 - MLT1H LTR MaLR -123 286 50 180 0 0 0 chrX 19762794 19762814 -157211326 + (T)n Simple_repeat Simple_repeat 1 20 0 315 0 0 0 chrX 19762933 19762968 -157211172 + (TG)n Simple_repeat Simple_repeat 1 35 0 681 181 36 18 chrX 19764789 19764955 -157209185 - L1MC4a LINE L1 0 7808 7640 1494 171 0 0 chrX 19765027 19765291 -157208849 + L1 LINE L1 4666 4929 -1217 1046 121 0 12 chrX 19765291 19765452 -157208688 + L1PB1 LINE L1 5986 6148 -3 1593 205 0 19 chrX 19765516 19765833 -157208307 + AluJo SINE Alu 1 311 -1 267 93 0 0 chrX 19766164 19766207 -157207933 + (TC)n Simple_repeat Simple_repeat 1 43 0 355 236 72 85 chrX 19766563 19766710 -157207430 - MLT1H LTR MaLR 0 580 436 678 255 52 95 chrX 19766734 19767002 -157207138 - MLT1H LTR MaLR -235 314 61 2225 128 0 0 chrX 19767002 19767314 -157206826 + AluSx SINE Alu 1 312 0 678 255 52 95 chrX 19767314 19767371 -157206769 - MLT1H LTR MaLR -488 61 3 475 156 100 0 chrX 19767376 19767466 -157206674 + AluJ/FLAM SINE Alu 1 99 -213 23 0 0 0 chrX 19767652 19767675 -157206465 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 19769284 19769306 -157204834 + AT_rich Low_complexity Low_complexity 1 22 0 245 220 60 0 chrX 19769766 19769816 -157204324 - MER63 DNA MER1_type 0 1061 1009 21 36 0 0 chrX 19770006 19770034 -157204106 + AT_rich Low_complexity Low_complexity 1 28 0 189 383 133 20 chrX 19770803 19770999 -157203141 - L2 LINE L2 -189 3083 2866 1826 169 43 27 chrX 19771663 19772031 -157202109 - MLT1A2 LTR MaLR 0 374 1 400 245 49 68 chrX 19772031 19772194 -157201946 - MIR SINE MIR -59 203 44 399 89 0 0 chrX 19772668 19772724 -157201416 + (CA)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chrX 19773145 19773169 -157200971 + AT_rich Low_complexity Low_complexity 1 24 0 1098 204 0 5 chrX 19773284 19773480 -157200660 - MER58A DNA MER1_type -19 205 11 25 51 0 0 chrX 19773609 19773648 -157200492 + AT_rich Low_complexity Low_complexity 1 39 0 2079 132 0 22 chrX 19774118 19774437 -157199703 - AluSx SINE Alu 0 312 1 252 184 0 0 chrX 19774565 19774614 -157199526 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 411 239 18 18 chrX 19775555 19775664 -157198476 + L2 LINE L2 3197 3305 -8 2175 69 4 4 chrX 19775859 19776134 -157198006 - AluSx SINE Alu -4 308 34 475 192 115 64 chrX 19776543 19776699 -157197441 - MER5B DNA MER1_type -7 171 8 335 266 62 8 chrX 19776705 19776833 -157197307 - Charlie2 DNA MER1_type -1 2861 2727 790 256 169 0 chrX 19777027 19777293 -157196847 - Charlie2 DNA MER1_type -2464 318 8 1093 88 0 0 chrX 19778020 19778168 -157195972 + L1PA10 LINE L1 6006 6153 -15 272 349 28 28 chrX 19779463 19779572 -157194568 - L2 LINE L2 0 3313 3205 1584 188 0 4 chrX 19779798 19780074 -157194066 + AluJo SINE Alu 6 280 -32 186 43 0 0 chrX 19780074 19780097 -157194043 + (TAAAA)n Simple_repeat Simple_repeat 5 27 0 4268 118 93 35 chrX 19780169 19780934 -157193206 - L1PA16 LINE L1 -1 6165 5357 557 136 0 11 chrX 19780935 19781023 -157193117 - AluS SINE Alu -225 87 1 855 138 147 41 chrX 19781030 19781248 -157192892 - L1PA16 LINE L1 -789 5357 5117 288 23 23 23 chrX 19781533 19781576 -157192564 + MADE1 DNA Mariner 38 80 0 867 150 0 0 chrX 19781663 19781796 -157192344 - FLAM_C SINE Alu 0 133 1 652 221 77 99 chrX 19781796 19782018 -157192122 - MER58A DNA MER1_type -6 218 2 2010 143 61 0 chrX 19782580 19782959 -157191181 - L1MA8 LINE L1 -3 6288 5887 2532 230 30 82 chrX 19783744 19784976 -157189164 + L1MB5 LINE L1 5008 6330 -4 823 291 138 19 chrX 19786610 19787026 -157187114 + MLT1F LTR MaLR 20 461 -81 317 197 76 0 chrX 19787266 19787332 -157186808 + MER91C DNA MER1_type 38 108 -32 3213 115 20 2 chrX 19787532 19788027 -157186113 + L1PA15 LINE L1 5652 6155 -10 1780 181 0 3 chrX 19788067 19788355 -157185785 + AluJo SINE Alu 3 289 -23 791 229 6 6 chrX 19788467 19788642 -157185498 - MER5B DNA MER1_type -3 175 1 607 263 26 13 chrX 19788666 19788818 -157185322 - MER5B DNA MER1_type -2 176 23 786 148 66 33 chrX 19788925 19789107 -157185033 + MER53 DNA DNA 2 189 0 848 228 22 0 chrX 19789832 19790016 -157184124 + MER5A DNA MER1_type 2 189 0 478 238 36 57 chrX 19790375 19790568 -157183572 - LTR28 LTR ERV1 -9 1011 823 284 349 78 8 chrX 19790569 19790698 -157183442 - MIR3 SINE MIR -36 172 35 2172 113 3 3 chrX 19790792 19791102 -157183038 - AluSq SINE Alu -3 310 1 28 61 0 0 chrX 19793536 19793585 -157180555 + AT_rich Low_complexity Low_complexity 1 49 0 1520 203 10 7 chrX 19793585 19793875 -157180265 - AluJo SINE Alu -21 291 1 580 174 17 0 chrX 19793876 19793991 -157180149 - L1MB7 LINE L1 -50 6134 6018 625 229 124 39 chrX 19793992 19794371 -157179769 - MER4C LTR ERV1 -5 460 257 472 171 72 18 chrX 19794516 19794627 -157179513 - MER4A LTR ERV1 -547 117 1 1706 157 35 3 chrX 19794627 19794939 -157179201 - L1MB7 LINE L1 -159 6025 5704 910 317 52 29 chrX 19794939 19795422 -157178718 + L2 LINE L2 1767 2260 -1054 632 259 125 14 chrX 19795577 19795793 -157178347 + MIR SINE MIR 13 252 -10 1962 199 80 16 chrX 19795913 19796351 -157177789 - MLT1C LTR MaLR 0 467 2 196 361 60 0 chrX 19796577 19796660 -157177480 + L2 LINE L2 2987 3074 -198 336 276 276 0 chrX 19797258 19797392 -157176748 + MIR SINE MIR 33 203 -59 2306 149 70 12 chrX 19797405 19797807 -157176333 - MSTB LTR MaLR 0 426 2 269 279 89 0 chrX 19797956 19798035 -157176105 + L2 LINE L2 3224 3309 -4 189 273 114 34 chrX 19799067 19799155 -157174985 + L3b LINE CR1 1487 1581 -2 241 315 141 0 chrX 19799617 19799709 -157174431 + L2 LINE L2 3154 3258 -14 365 256 0 0 chrX 19799721 19799807 -157174333 - MIR SINE MIR 0 262 177 2172 13 0 0 chrX 19799812 19800050 -157174090 - AluYb8 SINE Alu -8 310 73 217 356 40 20 chrX 19800104 19800253 -157173887 + MIR SINE MIR 109 260 -2 830 234 57 55 chrX 19800501 19800749 -157173391 - MIR SINE MIR -3 259 13 301 246 186 0 chrX 19800892 19801010 -157173130 + L1M4 LINE L1 5350 5489 -695 1347 289 80 42 chrX 19801060 19802038 -157172102 + L2 LINE L2 2284 3280 -33 1959 128 3 20 chrX 19802070 19802374 -157171766 + AluJb SINE Alu 1 299 -13 3485 89 14 12 chrX 19802470 19802977 -157171163 - L1PB2 LINE L1 -2 6149 5642 327 146 0 0 chrX 19803210 19803265 -157170875 + (TA)n Simple_repeat Simple_repeat 1 55 0 363 59 0 0 chrX 19804771 19804822 -157169318 - MADE1 DNA Mariner -1 79 29 603 261 53 83 chrX 19805182 19805446 -157168694 + MIR SINE MIR 2 257 -5 232 236 87 31 chrX 19805487 19805614 -157168526 - L1MC/D LINE L1 -1903 5905 5772 369 233 0 0 chrX 19805683 19805769 -157168371 - L1MC5 LINE L1 -54 7907 7822 1819 160 0 13 chrX 19806635 19806935 -157167205 - AluJb SINE Alu -16 296 1 683 261 148 70 chrX 19806960 19807076 -157167064 - L2 LINE L2 -12 3301 3195 945 215 96 40 chrX 19807076 19807430 -157166710 - MLT1A2 LTR MaLR 0 374 1 683 261 148 70 chrX 19807430 19807685 -157166455 - L2 LINE L2 -118 3195 2901 476 299 97 19 chrX 19807683 19807890 -157166250 - L2 LINE L2 -86 3227 3005 * 383 317 8 8 chrX 19808298 19808418 -157165722 - MIR SINE MIR 0 262 143 207 234 62 16 chrX 19808839 19808903 -157165237 + MER5A DNA MER1_type 121 187 -2 534 206 191 0 chrX 19808913 19809044 -157165096 + MER5A DNA MER1_type 33 188 -1 289 273 70 70 chrX 19809089 19809217 -157164923 + MER5B DNA MER1_type 1 128 -50 225 0 0 0 chrX 19809555 19809580 -157164560 + (A)n Simple_repeat Simple_repeat 1 25 0 669 272 40 6 chrX 19809814 19809987 -157164153 - MER5A DNA MER1_type -2 187 9 239 326 31 20 chrX 19810731 19810829 -157163311 - MER91A DNA MER1_type -81 115 17 2328 93 0 0 chrX 19811100 19811401 -157162739 + AluSc SINE Alu 1 301 -8 711 141 89 0 chrX 19811410 19811545 -157162595 + L1MA9 LINE L1 6047 6193 -119 405 136 25 12 chrX 19811664 19811745 -157162395 + L1MA9 LINE L1 6169 6250 -62 1041 261 20 33 chrX 19811901 19812204 -157161936 - MER101B LTR ERV1 -271 299 1 312 200 67 0 chrX 19812204 19812279 -157161861 + L1MA9 LINE L1 6229 6308 -4 368 333 143 22 chrX 19812847 19813120 -157161020 + L2 LINE L2 3008 3313 0 35 0 0 0 chrX 19813132 19813167 -157160973 + AT_rich Low_complexity Low_complexity 1 35 0 1928 132 10 3 chrX 19813196 19813492 -157160648 + AluSx SINE Alu 4 301 -11 226 213 21 0 chrX 19813774 19813821 -157160319 + (TG)n Simple_repeat Simple_repeat 2 49 0 2007 200 35 71 chrX 19815249 19815768 -157158372 - MLT1D LTR MaLR -5 500 1 2647 134 29 27 chrX 19816619 19816848 -157157292 - L1PA16 LINE L1 -9 6157 5925 2089 108 0 27 chrX 19816848 19817143 -157156997 - AluSg SINE Alu -23 287 1 2647 134 29 27 chrX 19817143 19817360 -157156780 - L1PA16 LINE L1 -241 5925 5710 341 94 0 31 chrX 19818787 19818851 -157155289 + (TCTCTG)n Simple_repeat Simple_repeat 2 63 0 2131 192 43 31 chrX 19819206 19819628 -157154512 + MSTA LTR MaLR 1 427 -1 225 242 5 89 chrX 19821319 19821509 -157152631 + T-rich Low_complexity Low_complexity 5 178 0 12000 161 24 39 chrX 19822754 19822907 -157151233 - L1MA4 LINE L1 -6 6476 6322 2313 98 0 16 chrX 19822907 19823223 -157150917 - AluSx SINE Alu -1 311 1 12000 161 24 39 chrX 19823223 19826259 -157147881 - L1MA4 LINE L1 -160 6322 3344 207 0 0 0 chrX 19826259 19826282 -157147858 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 12000 161 24 39 chrX 19826282 19826580 -157147560 - L1MA4 LINE L1 -3138 3344 3043 1689 192 3 6 chrX 19826581 19826893 -157147247 - AluJb SINE Alu -1 311 1 944 120 0 40 chrX 19826900 19827050 -157147090 - AluSg/x SINE Alu -15 297 154 5283 210 32 13 chrX 19827060 19829384 -157144756 - L1MA4 LINE L1 -3282 3046 680 258 136 0 0 chrX 19829384 19829428 -157144712 + (TCC)n Simple_repeat Simple_repeat 3 46 0 3965 181 11 16 chrX 19829448 19830143 -157143997 - L1MA4 LINE L1 -4635 693 2 34 0 0 0 chrX 19830147 19830181 -157143959 + AT_rich Low_complexity Low_complexity 1 34 0 575 162 52 17 chrX 19830197 19830370 -157143770 + CT-rich Low_complexity Low_complexity 2 180 0 707 241 86 0 chrX 19830374 19830548 -157143592 - AluJo SINE Alu -39 273 85 283 325 148 48 chrX 19831913 19831992 -157142148 - MIR SINE MIR -10 252 182 1443 214 25 42 chrX 19831992 19832394 -157141746 - MLT2C1 LTR ERVL -2 395 1 283 325 148 48 chrX 19832394 19832523 -157141617 - MIR SINE MIR -80 182 23 261 163 0 0 chrX 19832596 19832645 -157141495 + (CA)n Simple_repeat Simple_repeat 1 49 0 277 329 47 0 chrX 19833986 19834071 -157140069 - L3 LINE CR1 -115 1462 1374 184 326 132 28 chrX 19834080 19834224 -157139916 + L2 LINE L2 3154 3312 -1 358 380 51 11 chrX 19834496 19834770 -157139370 - L3 LINE CR1 -691 886 602 21 0 0 0 chrX 19835030 19835051 -157139089 + AT_rich Low_complexity Low_complexity 1 21 0 325 287 39 12 chrX 19836266 19836476 -157137664 - L1ME LINE L1 -242 5879 5663 2142 108 0 3 chrX 19837396 19837691 -157136449 - AluSx SINE Alu -17 295 2 2766 143 39 41 chrX 19838098 19838638 -157135502 - L1MD1 LINE L1 0 6242 5704 1618 166 7 31 chrX 19838638 19838928 -157135212 - AluJb SINE Alu -29 283 1 984 268 62 25 chrX 19839405 19840092 -157134048 - L1ME3A LINE L1 -186 5984 5107 239 196 22 33 chrX 19840210 19840302 -157133838 + (TA)n Simple_repeat Simple_repeat 2 92 0 450 290 59 16 chrX 19841004 19841190 -157132950 - L2 LINE L2 0 3313 3120 551 245 155 7 chrX 19841203 19841358 -157132782 - MER5A DNA MER1_type -3 186 9 2076 273 80 44 chrX 19841404 19842227 -157131913 - L2 LINE L2 -225 3088 2236 235 262 174 34 chrX 19842230 19842379 -157131761 - MIR SINE MIR -70 192 23 566 292 77 5 chrX 19842733 19842942 -157131198 + LTR16C LTR ERVL 237 460 -31 200 265 102 0 chrX 19843000 19843049 -157131091 + L2 LINE L2 3246 3299 -14 180 77 0 0 chrX 19843652 19843678 -157130462 + (TTA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chrX 19844149 19844172 -157129968 + AT_rich Low_complexity Low_complexity 1 23 0 1581 198 0 22 chrX 19845090 19845403 -157128737 - AluJb SINE Alu -6 306 1 244 45 0 45 chrX 19845833 19845877 -157128263 + (TC)n Simple_repeat Simple_repeat 1 42 0 722 254 88 45 chrX 19847962 19848292 -157125848 + MARNA DNA Mariner 41 384 -202 2239 266 74 34 chrX 19849335 19850269 -157123871 + L1MC4 LINE L1 4134 4613 -1533 2168 94 40 3 chrX 19850269 19850567 -157123573 - AluSc SINE Alu 0 309 1 2239 266 74 34 chrX 19850567 19851381 -157122759 + L1MC4 LINE L1 4613 5393 -753 529 240 32 0 chrX 19851415 19851540 -157122600 - MLT1E3 LTR MaLR 0 624 496 814 240 106 17 chrX 19851568 19851851 -157122289 - MLT1E1 LTR MaLR -365 289 1 2101 201 19 111 chrX 19851851 19852254 -157121886 + L1MC4 LINE L1 7375 7681 -361 2217 86 7 26 chrX 19852254 19852558 -157121582 + AluSx SINE Alu 1 298 -14 2101 201 19 111 chrX 19852558 19852890 -157121250 + L1MC4 LINE L1 7681 8042 0 180 231 46 62 chrX 19852918 19852983 -157121157 + MIR SINE MIR 197 260 -2 23 0 0 0 chrX 19853115 19853138 -157121002 + AT_rich Low_complexity Low_complexity 1 23 0 1390 211 38 41 chrX 19853196 19853538 -157120602 - LTR16C LTR ERVL 0 491 151 414 336 108 9 chrX 19853764 19853978 -157120162 + MIR SINE MIR 28 262 0 1795 200 34 48 chrX 19854530 19855004 -157119136 - MLT1C LTR MaLR 0 467 1 3241 200 33 8 chrX 19856031 19856755 -157117385 - L1MB8 LINE L1 0 6178 5437 1197 224 137 31 chrX 19856788 19857146 -157116994 + MSTD LTR MaLR 1 396 0 1829 173 0 6 chrX 19857495 19857629 -157116511 + AluJb SINE Alu 1 134 -178 2482 37 3 3 chrX 19857629 19857927 -157116213 + AluY SINE Alu 1 298 -13 1829 173 0 6 chrX 19857927 19858105 -157116035 + AluJb SINE Alu 134 311 -1 222 333 0 0 chrX 19858105 19858180 -157115960 - MIR SINE MIR -66 196 122 227 315 0 56 chrX 19858527 19858616 -157115524 + LTR16A1 LTR ERVL 365 448 -9 302 340 108 42 chrX 19858694 19858935 -157115205 + L3b LINE CR1 1310 1566 -17 21 0 0 0 chrX 19859703 19859724 -157114416 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 19859892 19859914 -157114226 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chrX 19859925 19859965 -157114175 + AT_rich Low_complexity Low_complexity 1 40 0 445 304 7 7 chrX 19860121 19860256 -157113884 + HAL1 LINE L1 1615 1749 -758 661 231 78 112 chrX 19860453 19860864 -157113276 + HAL1b LINE L1 582 978 -370 33 43 0 0 chrX 19861087 19861134 -157113006 + AT_rich Low_complexity Low_complexity 1 47 0 2265 97 7 3 chrX 19861271 19861580 -157112560 - AluSx SINE Alu -2 310 1 7796 193 26 10 chrX 19861885 19862428 -157111712 + L1PA16 LINE L1 3529 4061 -2105 2645 114 46 7 chrX 19862428 19862840 -157111300 + MSTA LTR MaLR 1 428 0 7796 193 26 10 chrX 19862840 19864884 -157109256 + L1PA16 LINE L1 4061 6161 -5 21 0 0 0 chrX 19864888 19864909 -157109231 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chrX 19866058 19866092 -157108048 + (TC)n Simple_repeat Simple_repeat 1 34 0 313 363 45 32 chrX 19866105 19866262 -157107878 + L2 LINE L2 3114 3272 0 244 218 0 18 chrX 19866558 19866613 -157107527 + MIR SINE MIR 98 151 -111 466 313 54 20 chrX 19867398 19867627 -157106513 + MIR SINE MIR 2 237 -25 375 89 0 0 chrX 19867666 19867722 -157106418 + (TG)n Simple_repeat Simple_repeat 1 56 0 1927 176 15 53 chrX 19867722 19868120 -157106020 + MLT1B LTR MaLR 5 387 -3 576 0 0 0 chrX 19868121 19868185 -157105955 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 1441 243 60 21 chrX 19868299 19868781 -157105359 - L1ME3 LINE L1 -15 6147 5647 1147 134 37 28 chrX 19868892 19869109 -157105031 + MER20 DNA MER1_type 1 219 0 206 146 0 24 chrX 19869397 19869438 -157104702 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 31 0 0 0 chrX 19870122 19870153 -157103987 + AT_rich Low_complexity Low_complexity 1 31 0 2704 184 53 9 chrX 19872033 19872560 -157101580 + MER44D DNA MER2_type 1 605 0 2113 30 56 11 chrX 19873121 19873421 -157100719 - AluY SINE Alu 0 312 1 228 378 18 9 chrX 19873627 19873738 -157100402 - L2 LINE L2 -663 2651 2540 2364 167 51 6 chrX 19873752 19874224 -157099916 - L1MB3 LINE L1 -3 6180 5688 23 0 0 0 chrX 19874389 19874412 -157099728 + AT_rich Low_complexity Low_complexity 1 23 0 519 190 8 0 chrX 19874505 19874627 -157099513 - L1MA9 LINE L1 -8 6304 6177 2467 169 47 78 chrX 19874639 19875302 -157098838 + LTR48B LTR ERV1 3 644 0 517 154 0 19 chrX 19875437 19875541 -157098599 - L1MB3 LINE L1 -2 6181 6080 4517 211 49 23 chrX 19875739 19877053 -157097087 - L1MCb LINE L1 -4848 1197 3 21 0 0 0 chrX 19877261 19877282 -157096858 + AT_rich Low_complexity Low_complexity 1 21 0 2133 129 7 0 chrX 19879309 19879611 -157094529 + AluSq SINE Alu 1 304 -9 352 317 130 31 chrX 19879779 19879940 -157094200 - MER5B DNA MER1_type -1 177 1 5725 162 25 19 chrX 19880307 19882109 -157092031 - L1MA9 LINE L1 0 6312 4492 2026 182 25 19 chrX 19882102 19882535 -157091605 - L1MA9 LINE L1 -2324 3822 3387 * 3177 253 67 10 chrX 19882524 19884811 -157089329 - L1M4c LINE L1 -4081 2131 1 698 120 0 51 chrX 19884949 19884977 -157089163 - FLAM_C SINE Alu -170 142 114 1195 7 0 14 chrX 19884977 19885123 -157089017 + (TCTA)n Simple_repeat Simple_repeat 1 144 0 698 120 0 51 chrX 19885123 19885211 -157088929 - FLAM_C SINE Alu -198 114 32 261 186 0 0 chrX 19885932 19885975 -157088165 - MLT1I LTR MaLR -4 405 363 914 56 0 0 chrX 19886070 19886178 -157087962 - AluSg SINE Alu -202 108 1 390 21 0 0 chrX 19886184 19886231 -157087909 + (TG)n Simple_repeat Simple_repeat 2 48 0 546 270 26 13 chrX 19886327 19886479 -157087661 - L2 LINE L2 -2 3311 3158 182 37 37 0 chrX 19887955 19887982 -157086158 + (CA)n Simple_repeat Simple_repeat 1 28 0 2392 97 0 0 chrX 19888699 19889007 -157085133 - AluSg SINE Alu -2 308 1 715 289 105 23 chrX 19889081 19889568 -157084572 - L1MC/D LINE L1 -1989 5819 5293 1038 189 11 0 chrX 19890214 19890405 -157083735 - MLT1D LTR MaLR -312 193 1 218 227 40 27 chrX 19890631 19890706 -157083434 + MIR SINE MIR 180 255 -7 4319 163 10 20 chrX 19891144 19891445 -157082695 - MER44D DNA MER2_type -1891 596 434 1810 174 3 16 chrX 19891445 19891761 -157082379 - AluJb SINE Alu 0 312 1 4319 163 10 20 chrX 19891761 19892190 -157081950 - MER44D DNA MER2_type -2053 434 2 244 373 97 22 chrX 19892537 19892722 -157081418 - L2 LINE L2 -698 2616 2418 4217 116 8 9 chrX 19893029 19893659 -157080481 - MER39B LTR ERV1 -23 630 2 318 322 102 19 chrX 19893659 19893864 -157080276 - L3 LINE CR1 -139 1438 1217 220 259 129 12 chrX 19894121 19894206 -157079934 - L3 LINE CR1 -341 1236 1142 297 0 0 0 chrX 19894263 19894296 -157079844 + (TA)n Simple_repeat Simple_repeat 1 33 0 3139 163 19 36 chrX 19894443 19895058 -157079082 + MER6A DNA MER2_type 1 605 0 316 336 45 0 chrX 19895424 19895558 -157078582 + MIR SINE MIR 100 239 -23 554 268 47 94 chrX 19896032 19896565 -157077575 - L1MEd LINE L1 -5124 995 488 22 0 0 0 chrX 19897903 19897925 -157076215 + AT_rich Low_complexity Low_complexity 1 22 0 382 268 52 46 chrX 19897939 19898092 -157076048 - MIR SINE MIR -9 253 100 336 278 27 30 chrX 19898154 19898304 -157075836 - MIR SINE MIR -67 141 34 1338 191 8 129 chrX 19898467 19898824 -157075316 - MER47B DNA MER2_type -104 314 1 3168 125 52 24 chrX 19898835 19899372 -157074768 - MER34C LTR ERV1 0 585 34 200 237 0 17 chrX 19900176 19900235 -157073905 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 231 218 0 0 chrX 19900541 19900596 -157073544 + (TA)n Simple_repeat Simple_repeat 2 56 0 240 86 0 0 chrX 19900634 19900669 -157073471 + (CA)n Simple_repeat Simple_repeat 2 36 0 314 311 96 25 chrX 19900696 19901006 -157073134 - L1M3 LINE L1 -383 5797 5466 2027 181 21 7 chrX 19901757 19902394 -157071746 - MER39 LTR ERV1 0 707 4 228 86 0 0 chrX 19902435 19902470 -157071670 + (TCTCTG)n Simple_repeat Simple_repeat 4 38 0 1013 133 17 0 chrX 19902624 19902805 -157071335 - L1MA7 LINE L1 -2 6289 6106 2187 101 0 14 chrX 19902808 19903105 -157071035 + AluSx SINE Alu 1 293 -19 616 316 126 5 chrX 19904184 19904399 -157069741 - MIR SINE MIR -6 256 16 307 260 0 14 chrX 19904809 19904882 -157069258 + L2 LINE L2 3238 3309 -4 279 0 0 0 chrX 19905614 19905645 -157068495 + (CA)n Simple_repeat Simple_repeat 2 32 0 399 242 48 48 chrX 19906304 19906428 -157067712 + L2 LINE L2 3190 3313 0 785 268 66 5 chrX 19906980 19907178 -157066962 - MIR SINE MIR -47 215 6 685 155 81 6 chrX 19907263 19907424 -157066716 - L1MB2 LINE L1 -3 6168 5996 2414 119 70 5 chrX 19907607 19908009 -157066131 - MSTA LTR MaLR 0 428 1 1859 143 22 74 chrX 19908279 19908350 -157065790 - MER2 DNA MER2_type 0 344 271 2248 115 0 13 chrX 19908350 19908662 -157065478 + AluSx SINE Alu 3 310 -2 1859 143 22 74 chrX 19908662 19908953 -157065187 - MER2 DNA MER2_type -73 271 1 1925 131 44 7 chrX 19909485 19909783 -157064357 + AluJb SINE Alu 1 309 -3 2208 103 0 29 chrX 19909828 19910140 -157064000 + AluSx SINE Alu 1 303 -9 2619 48 3 0 chrX 19910628 19910938 -157063202 - AluY SINE Alu 0 311 1 2101 108 7 0 chrX 19911616 19911949 -157062191 - AluSx SINE Alu 0 336 2 278 160 20 20 chrX 19911977 19912077 -157062063 + (TA)n Simple_repeat Simple_repeat 1 100 0 1425 173 24 0 chrX 19912080 19912335 -157061805 - MER2 DNA MER2_type 0 345 85 980 196 0 0 chrX 19912441 19912625 -157061515 - AluJ SINE Alu 0 312 129 826 165 0 0 chrX 19912667 19912800 -157061340 - AluJ SINE Alu -169 133 1 240 35 0 0 chrX 19912802 19912831 -157061309 + (TG)n Simple_repeat Simple_repeat 2 30 0 240 35 0 0 chrX 19913008 19913037 -157061103 + (CTG)n Simple_repeat Simple_repeat 2 30 0 564 136 45 98 chrX 19913669 19913801 -157060339 - THE1C LTR MaLR -250 125 1 21 36 0 0 chrX 19914091 19914119 -157060021 + AT_rich Low_complexity Low_complexity 1 28 0 289 216 54 0 chrX 19914816 19914890 -157059250 + L1MC/D LINE L1 5354 5431 -2377 1748 82 4 0 chrX 19914941 19915197 -157058943 - L1MA5 LINE L1 -2 6298 6042 2339 105 0 0 chrX 19915198 19915503 -157058637 - AluSx SINE Alu -7 305 1 7914 170 21 39 chrX 19915530 19917948 -157056192 - L1PA16 LINE L1 -23 7581 5223 628 186 23 0 chrX 19917948 19918077 -157056063 - AluJ SINE Alu -169 133 2 7914 170 21 39 chrX 19918077 19918355 -157055785 - L1PA16 LINE L1 -2381 5223 4942 243 0 0 0 chrX 19918358 19918385 -157055755 + (T)n Simple_repeat Simple_repeat 1 27 0 374 141 56 0 chrX 19918406 19918477 -157055663 - AluJ/FRAM SINE Alu -2 300 226 212 236 118 36 chrX 19918551 19918661 -157055479 + L2 LINE L2 3194 3312 -1 2247 102 0 13 chrX 19919231 19919536 -157054604 - AluSq SINE Alu -11 302 2 6409 242 13 21 chrX 19919795 19920445 -157053695 - L1PA16 LINE L1 -2659 4925 4271 1583 177 17 23 chrX 19920445 19920744 -157053396 - AluJb SINE Alu -15 297 1 6409 242 13 21 chrX 19920744 19922838 -157051302 - L1PA16 LINE L1 -3313 4271 2182 354 338 11 0 chrX 19923071 19923256 -157050884 - L1PA16 LINE L1 -5276 2298 2084 1174 362 10 24 chrX 19923344 19923929 -157050211 - L1PA16 LINE L1 -6210 1364 788 1092 161 29 33 chrX 19923929 19924171 -157049969 - L1MA5 LINE L1 -241 6059 5819 2388 93 3 0 chrX 19924288 19924598 -157049542 - AluSp SINE Alu -2 311 1 207 319 62 66 chrX 19924961 19925218 -157048922 - L2 LINE L2 -1313 2001 1746 804 165 0 0 chrX 19925444 19925601 -157048539 + FLAM_C SINE Alu 1 157 0 1625 203 7 3 chrX 19925604 19925905 -157048235 + AluJb SINE Alu 1 302 -10 312 27 0 0 chrX 19925905 19925942 -157048198 + (TA)n Simple_repeat Simple_repeat 1 37 0 297 51 0 0 chrX 19926745 19926784 -157047356 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 249 266 119 37 chrX 19927296 19927405 -157046735 - MIR SINE MIR -73 189 72 534 285 140 5 chrX 19928184 19928384 -157045756 - LTR33A LTR ERVL 0 523 297 204 281 7 65 chrX 19928466 19928619 -157045521 - L2 LINE L2 -64 3249 3106 432 140 56 9 chrX 19928626 19928733 -157045407 + MER96B DNA MER1_type? 253 364 -53 296 301 115 0 chrX 19928876 19928989 -157045151 - L2 LINE L2 -1015 2299 2174 351 175 25 0 chrX 19929016 19929096 -157045044 - L1MB7 LINE L1 0 6184 6103 * 3428 152 43 22 chrX 19929094 19929248 -157044892 - L1MB4 LINE L1 0 6180 6031 2351 77 7 0 chrX 19929248 19929548 -157044592 + AluSp SINE Alu 5 306 -7 3428 152 43 22 chrX 19929548 19930069 -157044071 - L1MB4 LINE L1 -149 6031 5491 2215 103 0 10 chrX 19930097 19930399 -157043741 - AluSg1 SINE Alu -10 299 1 386 221 131 25 chrX 19930491 19930613 -157043527 + L2 LINE L2 3179 3313 0 1929 154 3 0 chrX 19930615 19930914 -157043226 - AluJb SINE Alu -12 300 1 2113 137 0 0 chrX 19931782 19932088 -157042052 + AluSx SINE Alu 1 306 -6 198 0 0 0 chrX 19932178 19932200 -157041940 + (A)n Simple_repeat Simple_repeat 1 22 0 257 181 28 69 chrX 19932235 19932307 -157041833 - L2 LINE L2 0 3313 3245 23 0 0 0 chrX 19932427 19932450 -157041690 + AT_rich Low_complexity Low_complexity 1 23 0 2784 161 58 18 chrX 19932453 19933020 -157041120 + L1MB5 LINE L1 5585 6174 0 2429 77 0 0 chrX 19933146 19933446 -157040694 + AluY SINE Alu 1 300 -11 2317 104 0 0 chrX 19934963 19935261 -157038879 + AluSq SINE Alu 1 298 -15 366 357 17 8 chrX 19935889 19936045 -157038095 + MIR3 SINE MIR 21 178 -54 352 291 18 112 chrX 19937076 19937202 -157036938 - MIR SINE MIR -44 218 120 2329 48 14 0 chrX 19937202 19937492 -157036648 - AluY SINE Alu -17 294 1 352 291 18 112 chrX 19937492 19937588 -157036552 - MIR SINE MIR -142 120 17 207 69 0 0 chrX 19937778 19937807 -157036333 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 258 364 128 46 chrX 19938028 19938443 -157035697 + L2 LINE L2 2305 2753 -561 329 384 113 24 chrX 19938494 19938786 -157035354 + L2 LINE L2 2869 3186 -86 211 312 91 0 chrX 19939248 19939325 -157034815 - MIR SINE MIR -139 123 40 190 386 0 0 chrX 19939400 19939470 -157034670 + L2 LINE L2 3186 3255 -17 2244 96 0 3 chrX 19943610 19943912 -157030228 + AluSg SINE Alu 1 301 -9 379 304 49 54 chrX 19944220 19944404 -157029736 + MIR SINE MIR 14 196 -66 1718 101 0 0 chrX 19945967 19946195 -157027945 - AluSq SINE Alu -15 298 71 228 308 43 51 chrX 19946297 19946414 -157027726 + L2 LINE L2 2920 3035 -237 9110 188 48 8 chrX 19946556 19947416 -157026724 - L1MC3 LINE L1 -1 7784 6959 210 71 0 0 chrX 19947416 19947444 -157026696 + (TG)n Simple_repeat Simple_repeat 2 29 0 9110 188 48 8 chrX 19947444 19948435 -157025705 - L1MC3 LINE L1 -826 6959 5860 3250 200 161 34 chrX 19948434 19948973 -157025167 - L1MCa LINE L1 -4087 2339 1870 * 2309 104 0 0 chrX 19948973 19949281 -157024859 - AluSg SINE Alu 0 310 3 3250 200 161 34 chrX 19949281 19949429 -157024711 - L1MCa LINE L1 -4556 1870 1742 2652 42 0 0 chrX 19949429 19949735 -157024405 - AluYa5 SINE Alu -3 308 3 3250 200 161 34 chrX 19949735 19950179 -157023961 - L1MCa LINE L1 -4684 1742 1043 2489 61 0 0 chrX 19950179 19950472 -157023668 + AluY SINE Alu 1 293 -18 3250 200 161 34 chrX 19950472 19950539 -157023601 - L1MCa LINE L1 -5383 1043 986 362 350 103 27 chrX 19950551 19950598 -157023542 - L3 LINE CR1 -542 1035 993 379 89 0 208 chrX 19950598 19950699 -157023441 + MADE1 DNA Mariner 1 80 0 362 350 103 27 chrX 19950699 19950951 -157023189 - L3 LINE CR1 -584 993 713 341 260 85 30 chrX 19951419 19951660 -157022480 - L1ME3A LINE L1 -223 5947 5686 226 260 58 39 chrX 19951682 19951786 -157022354 - L1ME3A LINE L1 -481 5689 5584 467 275 10 3 chrX 19952798 19952943 -157021197 - MIR SINE MIR -59 149 16 22 0 0 0 chrX 19953816 19953838 -157020302 + AT_rich Low_complexity Low_complexity 1 22 0 236 265 0 0 chrX 19953839 19953888 -157020252 - MIR SINE MIR -3 259 211 2537 62 3 0 chrX 19953889 19954193 -157019947 - AluSp SINE Alu -8 305 1 2269 102 0 3 chrX 19954253 19954547 -157019593 + AluSc SINE Alu 2 294 -15 238 233 0 27 chrX 19954711 19954784 -157019356 + L1MEd LINE L1 59 129 -5990 336 146 37 98 chrX 19955059 19955141 -157018999 - MER74C LTR ERVL -380 80 4 592 217 0 0 chrX 19955151 19955257 -157018883 + FLAM_C SINE Alu 3 108 -35 2194 123 7 0 chrX 19956060 19956360 -157017780 + AluSx SINE Alu 1 302 -10 1219 168 48 81 chrX 19956399 19956733 -157017407 + MER33 DNA MER1_type 1 323 -1 2499 94 37 3 chrX 19957034 19957386 -157016754 + THE1B LTR MaLR 1 364 0 22 0 0 54 chrX 19957407 19957427 -157016713 + AT_rich Low_complexity Low_complexity 1 20 -15 2767 16 0 0 chrX 19957427 19957744 -157016396 - L1PA4 LINE L1 -2 6153 5837 22 0 0 54 chrX 19957744 19957760 -157016380 + AT_rich Low_complexity Low_complexity 20 35 0 219 218 0 0 chrX 19957951 19958006 -157016134 + (TA)n Simple_repeat Simple_repeat 1 55 0 1403 151 15 15 chrX 19958178 19958449 -157015691 + L1MB4 LINE L1 5910 6180 0 1436 153 0 9 chrX 19958509 19958731 -157015409 + AluJb SINE Alu 2 221 -91 233 258 15 0 chrX 19959393 19959459 -157014681 + (TA)n Simple_repeat Simple_repeat 2 68 0 2366 89 0 3 chrX 19959486 19959790 -157014350 - AluSg SINE Alu -7 303 1 1890 109 47 18 chrX 19960334 19960631 -157013509 + AluSx SINE Alu 1 305 0 22 35 0 0 chrX 19960763 19960792 -157013348 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 19960972 19961001 -157013139 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chrX 19962162 19962198 -157011942 + (TA)n Simple_repeat Simple_repeat 2 37 0 2361 74 0 10 chrX 19962198 19962497 -157011643 - AluSg SINE Alu -14 296 1 23 0 0 0 chrX 19962497 19962520 -157011620 + AT_rich Low_complexity Low_complexity 1 23 0 195 214 89 0 chrX 19963172 19963228 -157010912 + MER5C DNA MER1_type 263 323 -1 449 111 0 0 chrX 19963396 19963459 -157010681 - AluSp/q SINE Alu -17 296 234 209 0 98 0 chrX 20163461 20163502 -156810638 + (TA)n Simple_repeat Simple_repeat 2 46 0 2881 16 0 0 chrX 20163561 20163879 -156810261 + AluYb8 SINE Alu 1 318 0 2028 160 51 11 chrX 20165290 20165665 -156808475 - MLT1B LTR MaLR 0 390 1 255 31 0 0 chrX 20166081 20166113 -156808027 + (GA)n Simple_repeat Simple_repeat 1 32 0 271 294 43 11 chrX 20166178 20166270 -156807870 - MIR3 SINE MIR 0 208 114 257 231 26 26 chrX 20166475 20166553 -156807587 + (TATATG)n Simple_repeat Simple_repeat 3 80 0 25 31 0 0 chrX 20167703 20167735 -156806405 + AT_rich Low_complexity Low_complexity 1 32 0 569 113 105 23 chrX 20168346 20168479 -156805661 - MER103 DNA DNA -22 144 1 218 344 71 52 chrX 20168569 20168877 -156805263 - L2 LINE L2 -874 2440 2127 467 241 57 43 chrX 20168895 20169036 -156805104 - MIR SINE MIR -70 192 50 23 54 0 0 chrX 20169071 20169108 -156805032 + AT_rich Low_complexity Low_complexity 1 37 0 2533 71 0 0 chrX 20169326 20169636 -156804504 + AluSg SINE Alu 1 310 0 21 0 0 0 chrX 20169730 20169751 -156804389 + AT_rich Low_complexity Low_complexity 1 21 0 23 101 0 0 chrX 20171190 20171269 -156802871 + AT_rich Low_complexity Low_complexity 1 79 0 1681 171 0 30 chrX 20171774 20172073 -156802067 + AluJo SINE Alu 1 290 -22 24 0 0 0 chrX 20172094 20172118 -156802022 + AT_rich Low_complexity Low_complexity 1 24 0 480 242 24 8 chrX 20172664 20172788 -156801352 - MIR SINE MIR -18 244 119 590 328 86 66 chrX 20173314 20173781 -156800359 - MLT1K LTR MaLR -32 556 81 255 125 0 0 chrX 20173884 20173924 -156800216 + (TG)n Simple_repeat Simple_repeat 1 40 0 2215 98 20 0 chrX 20174212 20174509 -156799631 + AluSp SINE Alu 1 303 -10 2577 49 0 3 chrX 20174628 20174936 -156799204 - AluY SINE Alu -4 307 1 576 287 67 12 chrX 20175843 20176097 -156798043 - MLT1J LTR MaLR 0 511 244 844 161 13 0 chrX 20176505 20176654 -156797486 + L1MB1 LINE L1 6017 6167 -1 2196 94 0 3 chrX 20176662 20176977 -156797163 + AluSx SINE Alu 1 314 0 825 293 91 28 chrX 20177025 20177387 -156796753 + LTR16A1 LTR ERVL 3 387 -70 2203 114 0 3 chrX 20177387 20177694 -156796446 - AluSq SINE Alu -7 306 1 225 0 0 0 chrX 20177763 20177788 -156796352 + (CA)n Simple_repeat Simple_repeat 1 25 0 476 270 25 70 chrX 20178300 20178500 -156795640 + MIR SINE MIR 58 248 -14 359 298 84 8 chrX 20178590 20178721 -156795419 - MIR SINE MIR -102 160 20 186 43 0 0 chrX 20180290 20180313 -156793827 + (T)n Simple_repeat Simple_repeat 1 23 0 293 264 42 0 chrX 20182172 20182244 -156791896 + L2 LINE L2 3194 3268 -4 1092 226 4 8 chrX 20183247 20183513 -156790627 + L1M4 LINE L1 4725 4989 -1157 1248 211 50 0 chrX 20183572 20183871 -156790269 + MER33 DNA MER1_type 1 314 -10 27 0 0 0 chrX 20183970 20183997 -156790143 + AT_rich Low_complexity Low_complexity 1 27 0 206 206 0 0 chrX 20184147 20184181 -156789959 - L2 LINE L2 -87 3226 3193 785 175 0 19 chrX 20184502 20184656 -156789484 + L1PB3 LINE L1 6003 6153 -1 213 94 0 0 chrX 20186215 20186247 -156787893 + (CA)n Simple_repeat Simple_repeat 2 33 0 715 329 21 4 chrX 20186374 20186608 -156787532 - MIR SINE MIR -22 240 3 230 266 13 0 chrX 20186835 20186914 -156787226 + L1MC4 LINE L1 7963 8042 0 281 302 73 0 chrX 20187275 20187371 -156786769 + L2 LINE L2 3209 3311 -2 207 100 0 0 chrX 20187567 20187597 -156786543 + (TA)n Simple_repeat Simple_repeat 2 31 0 365 255 113 14 chrX 20189441 20189582 -156784558 + MER117 DNA MER1_type 9 163 -34 28 0 0 0 chrX 20190059 20190087 -156784053 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 20190292 20190320 -156783820 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chrX 20190688 20190712 -156783428 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 365 206 15 130 chrX 20190712 20190807 -156783333 + L1MC4 LINE L1 6616 6694 -1348 2112 105 3 0 chrX 20190807 20191093 -156783047 - AluSx SINE Alu -25 287 1 365 206 15 130 chrX 20191093 20191128 -156783012 + L1MC4 LINE L1 6694 6731 -1311 221 397 34 11 chrX 20192116 20192295 -156781845 - MIR SINE MIR -66 196 14 396 338 65 0 chrX 20192770 20192924 -156781216 + MIR SINE MIR 49 212 -50 553 271 17 40 chrX 20192955 20193132 -156781008 + MIR SINE MIR 63 235 -27 249 280 84 19 chrX 20193175 20193282 -156780858 + MIR SINE MIR 89 202 -60 404 281 92 38 chrX 20193811 20193996 -156780144 + MER91A DNA MER1_type 2 196 0 2189 150 23 0 chrX 20194052 20194406 -156779734 - MER47A DNA MER2_type -2 364 3 4536 62 0 0 chrX 20194490 20195059 -156779081 + L1PA7 LINE L1 5583 6151 -3 2112 108 3 7 chrX 20196379 20196674 -156777466 - AluSq SINE Alu -19 294 1 1771 212 54 62 chrX 20196823 20197289 -156776851 + MLT1C LTR MaLR 6 467 0 215 200 0 22 chrX 20197481 20197526 -156776614 + L3 LINE CR1 436 479 -1098 1234 193 133 11 chrX 20198406 20198670 -156775470 - AluJo SINE Alu -5 297 2 2272 116 0 0 chrX 20198732 20199034 -156775106 + AluSx SINE Alu 1 302 -10 2058 108 0 0 chrX 20199965 20200233 -156773907 - AluSq SINE Alu -45 268 1 24 67 0 0 chrX 20200691 20200736 -156773404 + AT_rich Low_complexity Low_complexity 1 45 0 2254 102 3 3 chrX 20200906 20201219 -156772921 - AluSp SINE Alu 0 313 1 1939 130 0 14 chrX 20201874 20202158 -156771982 + AluSx SINE Alu 1 280 -32 276 30 0 0 chrX 20202158 20202191 -156771949 + (TAA)n Simple_repeat Simple_repeat 1 33 0 229 50 0 50 chrX 20202599 20202639 -156771501 - L1MA10 LINE L1 -1 6333 6296 405 274 59 10 chrX 20202642 20202744 -156771396 - MIR SINE MIR -115 147 41 296 300 150 61 chrX 20203495 20203753 -156770387 - L2 LINE L2 -149 3164 2870 2272 93 3 3 chrX 20203753 20204055 -156770085 + AluSx SINE Alu 1 302 -10 296 300 150 61 chrX 20204055 20204123 -156770017 - L2 LINE L2 -443 2870 2809 2231 236 31 34 chrX 20204393 20204827 -156769313 - MLT1H1 LTR MaLR 0 555 122 3013 142 13 55 chrX 20204827 20205376 -156768764 + MER1A DNA MER1_type 1 526 -1 2231 236 31 34 chrX 20205376 20205496 -156768644 - MLT1H1 LTR MaLR -433 122 3 21 82 0 0 chrX 20206476 20206525 -156767615 + AT_rich Low_complexity Low_complexity 1 49 0 2156 101 3 3 chrX 20207226 20207522 -156766618 + AluSg SINE Alu 1 296 -14 507 297 71 29 chrX 20207701 20207938 -156766202 + MIR SINE MIR 20 262 0 31 26 0 0 chrX 20207958 20207996 -156766144 + AT_rich Low_complexity Low_complexity 1 38 0 1138 141 45 56 chrX 20207999 20208154 -156765986 + L1MB7 LINE L1 5919 6071 -113 2252 107 0 28 chrX 20208154 20208472 -156765668 + AluSc SINE Alu 1 309 0 1138 141 45 56 chrX 20208472 20208585 -156765555 + L1MB7 LINE L1 6071 6184 0 26 50 0 0 chrX 20208690 20208730 -156765410 + AT_rich Low_complexity Low_complexity 1 40 0 207 241 19 37 chrX 20208755 20208809 -156765331 - MIR SINE MIR -63 145 93 422 309 130 45 chrX 20208841 20209110 -156765030 - L2 LINE L2 -94 3219 2928 2441 117 5 17 chrX 20209761 20210172 -156763968 - L1MA4 LINE L1 -1 6299 5894 291 333 89 30 chrX 20210842 20211010 -156763130 + MIR SINE MIR 6 183 -79 22 0 0 0 chrX 20211160 20211182 -156762958 + AT_rich Low_complexity Low_complexity 1 22 0 2228 113 3 0 chrX 20211964 20212266 -156761874 + AluSq SINE Alu 2 304 -9 587 249 70 35 chrX 20213119 20213320 -156760820 + MIR SINE MIR 1 208 -54 487 292 45 7 chrX 20213717 20213871 -156760269 - MIR3 SINE MIR -5 203 44 252 0 0 0 chrX 20214451 20214479 -156759661 + (T)n Simple_repeat Simple_repeat 1 28 0 2299 157 16 0 chrX 20214490 20214866 -156759274 - MSTA LTR MaLR 0 428 47 615 152 0 2 chrX 20214863 20215001 -156759139 + AluSq SINE Alu 131 300 -13 * 377 136 0 17 chrX 20215001 20215060 -156759080 - MSTA LTR MaLR -368 58 1 1334 184 62 0 chrX 20215061 20215317 -156758823 - AluJo SINE Alu -36 276 5 202 244 134 47 chrX 20215980 20216107 -156758033 + MIR SINE MIR 67 204 -58 636 215 19 148 chrX 20216145 20216401 -156757739 + MIR SINE MIR 15 237 -25 215 226 19 19 chrX 20216634 20216687 -156757453 - L2 LINE L2 0 3313 3261 29 94 0 0 chrX 20217311 20217396 -156756744 + AT_rich Low_complexity Low_complexity 1 85 0 1877 194 14 19 chrX 20217496 20217863 -156756277 - MLT1A1 LTR MaLR 0 365 1 1360 150 154 19 chrX 20218049 20218315 -156755825 - AluJo SINE Alu 0 302 1 304 294 84 8 chrX 20218318 20218437 -156755703 - L1ME4a LINE L1 -5 6116 5989 747 296 28 24 chrX 20218464 20218714 -156755426 - MIR SINE MIR 0 262 12 384 237 68 26 chrX 20218741 20218931 -156755209 - L1ME4a LINE L1 -215 5906 5709 263 302 47 57 chrX 20219065 20219171 -156754969 - L2 LINE L2 -35 3237 3133 1089 167 5 9 chrX 20219604 20219819 -156754321 - L1MA7 LINE L1 -1 6290 6077 572 299 85 31 chrX 20221407 20221631 -156752509 - MIR SINE MIR 0 262 27 225 333 0 14 chrX 20221661 20221730 -156752410 - MIR SINE MIR -119 143 76 322 266 162 26 chrX 20222776 20222930 -156751210 - MER5B DNA MER1_type -1 177 3 542 227 187 40 chrX 20222945 20223095 -156751045 - MER5B DNA MER1_type -4 174 3 192 40 0 0 chrX 20223138 20223163 -156750977 + (CAG)n Simple_repeat Simple_repeat 1 25 0 338 263 203 0 chrX 20223164 20223282 -156750858 + MER5A DNA MER1_type 47 188 -1 320 248 119 34 chrX 20223288 20223489 -156750651 + MIR SINE MIR 35 251 -11 2284 50 14 0 chrX 20223497 20223774 -156750366 + AluSp SINE Alu 1 281 -32 228 35 0 0 chrX 20223774 20223803 -156750337 + (TA)n Simple_repeat Simple_repeat 2 30 0 229 222 0 0 chrX 20224938 20224983 -156749157 - L2 LINE L2 -7 3306 3262 279 0 0 0 chrX 20224991 20225022 -156749118 + (A)n Simple_repeat Simple_repeat 1 31 0 228 253 0 0 chrX 20226673 20226748 -156747392 + (TA)n Simple_repeat Simple_repeat 2 76 0 28 0 0 0 chrX 20227391 20227419 -156746721 + AT_rich Low_complexity Low_complexity 1 28 0 840 169 0 30 chrX 20227808 20227974 -156746166 - MER5A DNA MER1_type 0 189 29 30 27 0 0 chrX 20228131 20228168 -156745972 + AT_rich Low_complexity Low_complexity 1 37 0 994 87 0 0 chrX 20228292 20228418 -156745722 - AluSg/x SINE Alu -13 297 172 25 65 0 0 chrX 20228973 20229019 -156745121 + AT_rich Low_complexity Low_complexity 1 46 0 2445 78 3 0 chrX 20229298 20229605 -156744535 - AluSp SINE Alu -5 308 1 214 337 105 0 chrX 20229685 20229771 -156744369 + L2 LINE L2 3219 3313 0 2326 93 0 3 chrX 20229841 20230152 -156743988 - AluSg SINE Alu 0 310 1 2100 124 3 7 chrX 20230158 20230465 -156743675 - AluSx SINE Alu -6 306 1 2214 116 0 3 chrX 20230632 20230943 -156743197 + AluSx SINE Alu 3 312 0 1768 184 15 3 chrX 20231056 20231387 -156742753 - MER7A DNA MER2_type 0 346 14 27 62 0 0 chrX 20231969 20232017 -156742123 + AT_rich Low_complexity Low_complexity 1 48 0 2028 133 3 0 chrX 20232082 20232404 -156741736 - AluSx SINE Alu 0 312 1 2199 112 0 7 chrX 20232815 20233119 -156741021 + AluSx SINE Alu 1 302 -10 242 222 19 0 chrX 20233351 20233405 -156740735 + MIR3 SINE MIR 120 174 -34 2540 62 7 0 chrX 20233442 20233749 -156740391 - AluSx SINE Alu -3 309 1 832 292 55 39 chrX 20233861 20234224 -156739916 + LTR16C LTR ERVL 123 491 0 355 297 275 22 chrX 20234510 20234830 -156739310 + L2 LINE L2 2575 2975 -339 192 394 0 0 chrX 20234837 20234931 -156739209 + L2 LINE L2 3220 3313 0 230 172 17 35 chrX 20235079 20235137 -156739003 + (TA)n Simple_repeat Simple_repeat 1 57 0 2742 7 0 0 chrX 20235938 20236235 -156737905 + AluY SINE Alu 1 297 -14 235 302 177 24 chrX 20236625 20236792 -156737348 + MIR SINE MIR 31 220 -42 2018 144 35 11 chrX 20236826 20237193 -156736947 - L1MA9 LINE L1 -5 6307 5932 24 0 0 0 chrX 20237261 20237285 -156736855 + AT_rich Low_complexity Low_complexity 1 24 0 1661 162 11 0 chrX 20237854 20238119 -156736021 - AluJb SINE Alu -44 268 1 2022 125 3 0 chrX 20238129 20238432 -156735708 - AluSx SINE Alu -4 308 5 2364 47 20 14 chrX 20238539 20238836 -156735304 + AluY SINE Alu 1 299 -12 21 57 0 0 chrX 20239618 20239653 -156734487 + AT_rich Low_complexity Low_complexity 1 35 0 2306 87 3 10 chrX 20239935 20240235 -156733905 + AluSq SINE Alu 1 298 -15 2378 76 0 10 chrX 20240991 20241293 -156732847 + AluSq SINE Alu 1 299 -14 1064 161 11 0 chrX 20241367 20241541 -156732599 - AluSg/x SINE Alu 0 310 135 1825 130 42 13 chrX 20241969 20242286 -156731854 - MER44D DNA MER2_type -3 606 1 24 32 0 0 chrX 20242306 20242337 -156731803 + AT_rich Low_complexity Low_complexity 1 31 0 2061 112 0 30 chrX 20242437 20242741 -156731399 + AluSq SINE Alu 1 295 -18 50 18 0 0 chrX 20243386 20243443 -156730697 + AT_rich Low_complexity Low_complexity 1 57 0 1190 182 139 73 chrX 20243639 20244078 -156730062 + Charlie4a DNA MER1_type 39 506 -2 188 375 31 25 chrX 20244189 20244349 -156729791 - L2 LINE L2 -236 3036 2876 186 71 0 0 chrX 20244354 20244382 -156729758 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 21 36 0 0 chrX 20245379 20245407 -156728733 + AT_rich Low_complexity Low_complexity 1 28 0 2113 98 37 3 chrX 20245458 20245754 -156728386 - AluSq SINE Alu -7 306 1 1889 119 7 27 chrX 20245782 20246076 -156728064 + AluSx SINE Alu 1 288 -24 183 80 0 0 chrX 20246581 20246606 -156727534 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2208 88 0 3 chrX 20247035 20247319 -156726821 - AluSq SINE Alu -30 283 1 5182 163 33 1 chrX 20247910 20248264 -156725876 - L1PB3 LINE L1 0 6154 5813 293 0 27 0 chrX 20248264 20248301 -156725839 + (TG)n Simple_repeat Simple_repeat 2 39 0 5182 163 33 1 chrX 20248301 20249268 -156724872 - L1PB3 LINE L1 -341 5813 4793 2639 75 119 5 chrX 20249640 20250042 -156724098 - LTR7 LTR ERV1 -2 448 1 3380 57 9 7 chrX 20250631 20251073 -156723067 - LTR7 LTR ERV1 -7 443 1 286 310 50 66 chrX 20251240 20251482 -156722658 + MLT1L LTR MaLR 1 238 -377 183 42 0 0 chrX 20252016 20252040 -156722100 + (A)n Simple_repeat Simple_repeat 1 24 0 352 324 58 79 chrX 20252586 20252685 -156721455 - MIR SINE MIR -6 256 156 2301 92 0 16 chrX 20252685 20253002 -156721138 - AluSx SINE Alu 0 312 1 352 324 58 79 chrX 20253002 20253143 -156720997 - MIR SINE MIR -106 156 21 2090 130 3 0 chrX 20253630 20253938 -156720202 - AluSp SINE Alu -4 309 1 21 57 0 0 chrX 20253971 20254006 -156720134 + AT_rich Low_complexity Low_complexity 1 35 0 616 263 58 58 chrX 20254820 20255128 -156719012 - LTR33 LTR ERVL -2 519 212 4502 57 3 20 chrX 20255133 20255717 -156718423 + LTR10C LTR ERV1 11 584 -7 560 188 30 0 chrX 20256331 20256432 -156717708 + MER3 DNA MER1_type 10 113 -96 2292 94 3 13 chrX 20256433 20256740 -156717400 + AluSx SINE Alu 1 304 -8 2206 118 3 3 chrX 20257542 20257846 -156716294 + AluSq SINE Alu 1 304 -9 2600 52 0 0 chrX 20258074 20258383 -156715757 + AluY SINE Alu 1 309 -2 2287 103 0 3 chrX 20259512 20259823 -156714317 - AluSx SINE Alu -2 310 1 287 301 98 16 chrX 20260008 20260131 -156714009 + L2 LINE L2 3139 3271 -1 29 60 0 0 chrX 20260462 20260512 -156713628 + AT_rich Low_complexity Low_complexity 1 50 0 190 319 34 92 chrX 20260895 20261014 -156713126 - L2 LINE L2 -39 3233 3122 2217 102 0 3 chrX 20261173 20261499 -156712641 + AluSx SINE Alu 1 312 0 183 367 33 17 chrX 20261597 20261717 -156712423 - L2 LINE L2 -563 2751 2630 251 287 50 20 chrX 20263393 20263494 -156710646 + MIR SINE MIR 88 191 -71 313 233 11 0 chrX 20263932 20264022 -156710118 + (TATAA)n Simple_repeat Simple_repeat 5 95 0 668 184 0 0 chrX 20264811 20264925 -156709215 - FLAM_A SINE Alu -18 124 11 2389 75 0 3 chrX 20264990 20265283 -156708857 + AluSc SINE Alu 7 298 -11 27 62 0 0 chrX 20265582 20265630 -156708510 + AT_rich Low_complexity Low_complexity 1 48 0 1092 46 0 0 chrX 20265648 20265778 -156708362 - AluY SINE Alu -15 296 167 1717 149 54 14 chrX 20266003 20266298 -156707842 + AluSx SINE Alu 1 307 -5 494 290 122 29 chrX 20266550 20266788 -156707352 - MIR SINE MIR -1 261 2 238 184 26 0 chrX 20267524 20267600 -156706540 + (TA)n Simple_repeat Simple_repeat 1 78 0 4222 71 5 13 chrX 20269426 20270071 -156704069 + LTR8 LTR ERV1 1 691 0 45319 75 23 11 chrX 20270071 20271284 -156702856 + HUERS-P1 LTR ERV1 1 1199 -5064 222 37 0 0 chrX 20271284 20271311 -156702829 + (TC)n Simple_repeat Simple_repeat 2 28 0 45319 75 23 11 chrX 20271311 20272759 -156701381 + HUERS-P1 LTR ERV1 1199 2629 -3634 2178 98 0 46 chrX 20272759 20273086 -156701054 + AluSx SINE Alu 1 312 0 45319 75 23 11 chrX 20273086 20273331 -156700809 + HUERS-P1 LTR ERV1 2629 2870 -3393 312 48 0 0 chrX 20273331 20273373 -156700767 + (TG)n Simple_repeat Simple_repeat 1 42 0 45319 75 23 11 chrX 20273373 20275036 -156699104 + HUERS-P1 LTR ERV1 2870 4513 -1750 2074 66 77 7 chrX 20275036 20275309 -156698831 + AluSp SINE Alu 1 292 -21 45319 75 23 11 chrX 20275309 20276928 -156697212 + HUERS-P1 LTR ERV1 4513 6263 0 5104 73 24 0 chrX 20276928 20277603 -156696537 + LTR8 LTR ERV1 1 691 0 283 320 20 10 chrX 20277761 20277861 -156696279 - MER81 DNA DNA -13 101 1 4276 122 6 51 chrX 20277946 20278654 -156695486 - LTR8 LTR ERV1 -15 676 1 2066 147 100 35 chrX 20278737 20278835 -156695305 - MSTC LTR MaLR -1 427 337 3690 159 26 31 chrX 20278835 20279566 -156694574 - LTR8A LTR ERV1 0 727 1 2066 147 100 35 chrX 20279566 20279868 -156694272 - MSTC LTR MaLR -91 337 1 3010 113 2 0 chrX 20279937 20280370 -156693770 - MER57B LTR ERV1 0 434 1 2152 89 0 4 chrX 20280472 20280795 -156693345 - AluSq SINE Alu 0 326 5 405 326 74 19 chrX 20280853 20281068 -156693072 + MIR SINE MIR 36 262 0 1394 142 0 0 chrX 20281899 20282110 -156692030 - AluSq SINE Alu 0 313 103 726 277 114 7 chrX 20282340 20282611 -156691529 + LTR16C LTR ERVL 192 491 0 21 36 0 0 chrX 20282642 20282670 -156691470 + AT_rich Low_complexity Low_complexity 1 28 0 252 278 119 57 chrX 20282888 20283064 -156691076 + MER117 DNA MER1_type 5 191 -6 14037 128 20 6 chrX 20284206 20286385 -156687755 + Tigger1 DNA MER2_type 210 2418 0 218 264 0 0 chrX 20287067 20287120 -156687020 + (ATG)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chrX 20287458 20287481 -156686659 + AT_rich Low_complexity Low_complexity 1 23 0 1789 204 9 0 chrX 20287496 20287834 -156686306 - MLT1A1 LTR MaLR -24 341 1 1531 138 51 47 chrX 20287983 20288279 -156685861 + AluSx SINE Alu 1 297 -15 23 86 0 0 chrX 20288308 20288366 -156685774 + AT_rich Low_complexity Low_complexity 1 58 0 305 197 40 0 chrX 20288532 20288608 -156685532 + MER116 DNA Mariner 2 80 0 22 56 0 0 chrX 20289380 20289416 -156684724 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chrX 20289673 20289722 -156684418 + AT_rich Low_complexity Low_complexity 1 49 0 1249 231 218 14 chrX 20289725 20290279 -156683861 + L1M4 LINE L1 4358 5024 -1122 460 226 0 0 chrX 20290888 20290972 -156683168 + MLT1D LTR MaLR 1 84 -421 1989 238 33 1 chrX 20290976 20291484 -156682656 - MER77 LTR ERV1 -7 598 7 1185 209 60 97 chrX 20291471 20291611 -156682529 + MLT1D LTR MaLR 58 202 -303 * 2318 92 3 3 chrX 20291611 20291914 -156682226 + AluSq SINE Alu 1 303 -10 1185 209 60 97 chrX 20291914 20292172 -156681968 + MLT1D LTR MaLR 202 439 -66 1930 147 0 13 chrX 20292172 20292479 -156681661 + AluSx SINE Alu 1 303 -9 1185 209 60 97 chrX 20292479 20292542 -156681598 + MLT1D LTR MaLR 439 503 -2 204 40 0 0 chrX 20292598 20292623 -156681517 + (TG)n Simple_repeat Simple_repeat 2 26 0 258 246 0 14 chrX 20292677 20292746 -156681394 + (CA)n Simple_repeat Simple_repeat 1 68 0 3243 219 11 2 chrX 20293513 20294153 -156679987 - MER82 DNA MER2_type -7 646 1 1260 219 4 4 chrX 20294320 20294558 -156679582 + MER8 DNA MER2_type 1 238 -1 357 209 0 70 chrX 20295371 20295486 -156678654 + (TATATG)n Simple_repeat Simple_repeat 4 110 0 316 168 34 45 chrX 20295500 20295679 -156678461 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 24 53 0 0 chrX 20296362 20296400 -156677740 + AT_rich Low_complexity Low_complexity 1 38 0 255 61 0 0 chrX 20297220 20297253 -156676887 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 2160 84 14 3 chrX 20299033 20299320 -156674820 - AluSx SINE Alu -22 290 1 30 45 0 0 chrX 20299371 20299415 -156674725 + AT_rich Low_complexity Low_complexity 1 44 0 294 265 0 139 chrX 20299441 20299592 -156674548 + L3 LINE CR1 1293 1422 -155 497 208 62 99 chrX 20299740 20299932 -156674208 - MIR SINE MIR -76 186 2 282 374 0 38 chrX 20300473 20300604 -156673536 + L3 LINE CR1 1433 1558 -19 7721 22 0 0 chrX 20301152 20302570 -156671570 - L1PA3 LINE L1 -3 6152 4735 33 73 0 0 chrX 20302654 20302722 -156671418 + AT_rich Low_complexity Low_complexity 1 68 0 2498 89 27 16 chrX 20302840 20303211 -156670929 - THE1C LTR MaLR 0 375 1 3796 135 33 9 chrX 20303463 20304131 -156670009 + L1MC1 LINE L1 5650 6333 0 28 29 0 0 chrX 20304267 20304302 -156669838 + AT_rich Low_complexity Low_complexity 1 35 0 670 276 91 38 chrX 20304343 20304683 -156669457 + L1ME4a LINE L1 5512 5869 -252 27 49 0 0 chrX 20304734 20304775 -156669365 + AT_rich Low_complexity Low_complexity 1 41 0 1145 165 86 131 chrX 20304819 20305201 -156668939 + MLT1A1 LTR MaLR 1 365 0 1217 184 224 3 chrX 20305930 20306229 -156667911 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chrX 20306917 20306939 -156667201 + AT_rich Low_complexity Low_complexity 1 22 0 270 333 50 25 chrX 20307316 20307475 -156666665 - MIR SINE MIR -51 211 49 635 304 43 16 chrX 20307747 20308000 -156666140 + MLT1I LTR MaLR 2 261 -148 238 346 93 0 chrX 20307994 20308101 -156666039 + MLT1I LTR MaLR 215 331 -78 * 3404 170 111 15 chrX 20308656 20309397 -156664743 - L1MA9 LINE L1 -10 6302 5491 244 336 69 30 chrX 20310830 20310961 -156663179 + L2 LINE L2 3137 3272 0 213 281 11 0 chrX 20311178 20311267 -156662873 + (TA)n Simple_repeat Simple_repeat 2 91 0 1769 220 33 8 chrX 20311281 20311677 -156662463 + MER63B DNA MER1_type 3 408 -28 1284 229 20 47 chrX 20312376 20312677 -156661463 + L1ME4a LINE L1 -541 4294967047 -6557 406 276 0 0 chrX 20312826 20312924 -156661216 + L1ME4a LINE L1 5131 5228 -1178 1040 288 88 32 chrX 20313074 20313484 -156660656 + MLT1J LTR MaLR 79 511 0 364 341 129 21 chrX 20313488 20313907 -156660233 - L2 LINE L2 -21 3292 2829 350 301 86 67 chrX 20314750 20315136 -156659004 + L1ME4a LINE L1 5928 6320 -61 24 0 0 0 chrX 20315152 20315176 -156658964 + AT_rich Low_complexity Low_complexity 1 24 0 3892 89 19 0 chrX 20315246 20315788 -156658352 - L1P LINE L1 -1921 4225 3674 444 342 71 67 chrX 20316121 20316796 -156657344 - L2 LINE L2 -367 2947 2270 21 36 0 0 chrX 20317609 20317637 -156656503 + AT_rich Low_complexity Low_complexity 1 28 0 318 359 46 15 chrX 20317926 20318121 -156656019 - L2 LINE L2 -229 3043 2843 224 315 0 56 chrX 20318747 20318890 -156655250 - L2 LINE L2 -720 2594 2460 844 222 14 27 chrX 20319268 20319489 -156654651 + MER20 DNA MER1_type 2 219 0 833 278 86 24 chrX 20319599 20319937 -156654203 - MLT1J2 LTR MaLR -14 436 78 189 0 0 0 chrX 20321399 20321420 -156652720 + (CA)n Simple_repeat Simple_repeat 2 22 0 27 0 0 0 chrX 20322601 20322628 -156651512 + AT_rich Low_complexity Low_complexity 1 27 0 2314 60 7 0 chrX 20322689 20322993 -156651147 - AluY SINE Alu 0 306 1 22 80 0 0 chrX 20323008 20323058 -156651082 + AT_rich Low_complexity Low_complexity 1 50 0 2082 79 57 7 chrX 20323185 20323465 -156650675 - AluSq SINE Alu -11 302 9 2194 287 21 31 chrX 20323669 20324405 -156649735 + L1M4b LINE L1 7 647 -5762 2270 281 50 18 chrX 20324413 20325215 -156648925 + L1MD2 LINE L1 339 1075 -5334 2210 107 0 0 chrX 20325221 20325519 -156648621 + AluSx SINE Alu 1 298 -14 2525 222 78 34 chrX 20325521 20326001 -156648139 + L1MD2 LINE L1 4636 5093 -1526 912 99 56 12 chrX 20326001 20326162 -156647978 - L1MA10 LINE L1 -2 6332 6165 2525 222 78 34 chrX 20326162 20326448 -156647692 + L1MD2 LINE L1 5093 5365 -1254 1652 148 0 4 chrX 20326448 20326698 -156647442 + AluSx SINE Alu 3 251 -61 2525 222 78 34 chrX 20326698 20327374 -156646766 + L1MD2 LINE L1 5365 6144 -475 1869 258 13 7 chrX 20327381 20327920 -156646220 - L1P LINE L1 -3228 2918 2377 3956 128 6 8 chrX 20327926 20328557 -156645583 + L1PA16 LINE L1 5534 6163 -3 269 206 59 88 chrX 20328559 20328600 -156645540 + L1MD2 LINE L1 6141 6182 -437 1521 192 26 10 chrX 20328600 20328902 -156645238 - AluJo SINE Alu -3 309 3 269 206 59 88 chrX 20328902 20328962 -156645178 + L1MD2 LINE L1 6182 6239 -380 1537 186 13 0 chrX 20329283 20329590 -156644550 - L1MB5 LINE L1 0 6174 5864 938 241 49 52 chrX 20329594 20329942 -156644198 + L1MD2 LINE L1 6258 6604 -15 24 32 0 0 chrX 20330393 20330424 -156643716 + AT_rich Low_complexity Low_complexity 1 31 0 355 280 143 16 chrX 20331281 20331463 -156642677 - MIR SINE MIR -47 215 11 244 322 50 33 chrX 20332526 20332647 -156641493 + MIR3 SINE MIR 67 189 -19 303 311 160 0 chrX 20333701 20333807 -156640333 - L2 LINE L2 -2 3270 3148 2366 98 0 0 chrX 20334546 20334852 -156639288 + AluSx SINE Alu 1 306 -6 2378 79 3 13 chrX 20334930 20335245 -156638895 - AluSx SINE Alu 0 312 1 26 30 0 0 chrX 20335510 20335543 -156638597 + AT_rich Low_complexity Low_complexity 1 33 0 5734 167 51 40 chrX 20337154 20337800 -156636340 - L1PA16 LINE L1 0 6166 5529 1700 158 53 0 chrX 20337800 20338085 -156636055 - AluSx SINE Alu -12 300 1 5734 167 51 40 chrX 20338085 20338440 -156635700 - L1PA16 LINE L1 -637 5529 5180 2071 128 7 0 chrX 20338440 20338736 -156635404 + AluSx SINE Alu 1 298 -14 5734 167 51 40 chrX 20338736 20339967 -156634173 - L1PA16 LINE L1 -986 5180 3908 22 0 0 0 chrX 20342460 20342482 -156631658 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 20342839 20342860 -156631280 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chrX 20343272 20343301 -156630839 + AT_rich Low_complexity Low_complexity 1 29 0 403 309 143 0 chrX 20343617 20343876 -156630264 - L1ME LINE L1 -579 5568 5273 225 286 26 90 chrX 20344006 20344272 -156629868 - L1ME LINE L1 -1222 4907 4659 443 257 66 46 chrX 20344284 20344634 -156629506 - L1ME LINE L1 -4906 1213 857 309 26 0 0 chrX 20344767 20344805 -156629335 + (TGG)n Simple_repeat Simple_repeat 3 40 0 360 0 0 0 chrX 20345062 20345102 -156629038 + (TG)n Simple_repeat Simple_repeat 2 41 0 2950 163 25 42 chrX 20346465 20347059 -156627081 + L1MC1 LINE L1 5453 6036 -297 1224 162 4 58 chrX 20347059 20347300 -156626840 - MER46A DNA MER2_type -5 231 4 1352 184 40 7 chrX 20347300 20347578 -156626562 + L1MC1 LINE L1 6047 6333 0 21 82 0 0 chrX 20350049 20350098 -156624042 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chrX 20350179 20350207 -156623933 + AT_rich Low_complexity Low_complexity 1 28 0 253 305 162 24 chrX 20351005 20351172 -156622968 - MIR3 SINE MIR -4 204 15 629 161 18 0 chrX 20353533 20353645 -156620495 - L1MA4 LINE L1 -7 6293 6180 21 0 0 0 chrX 20353848 20353869 -156620271 + AT_rich Low_complexity Low_complexity 1 21 0 201 129 0 0 chrX 20354464 20354495 -156619645 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 362 273 121 18 chrX 20355228 20355393 -156618747 - MLT1L LTR MaLR -412 203 22 26 0 0 0 chrX 20355558 20355584 -156618556 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chrX 20355866 20355888 -156618252 + AT_rich Low_complexity Low_complexity 1 22 0 29 78 0 0 chrX 20355912 20355976 -156618164 + AT_rich Low_complexity Low_complexity 1 64 0 234 208 56 0 chrX 20356124 20356196 -156617944 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 2028 123 0 77 chrX 20356205 20356570 -156617570 + MER1B DNA MER1_type 1 337 0 249 232 0 0 chrX 20356575 20356644 -156617496 + (TA)n Simple_repeat Simple_repeat 1 69 0 2267 110 0 0 chrX 20357279 20357589 -156616551 + AluSq SINE Alu 1 310 -3 2258 68 0 0 chrX 20358389 20358710 -156615430 + AluY SINE Alu 1 321 0 186 133 0 0 chrX 20359138 20359168 -156614972 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2145 121 0 0 chrX 20359746 20360051 -156614089 + AluSg SINE Alu 1 305 -5 1122 144 64 0 chrX 20362508 20362696 -156611444 + L1MA8 LINE L1 4030 4229 -1917 24 53 0 0 chrX 20362703 20362741 -156611399 + AT_rich Low_complexity Low_complexity 1 38 0 3387 164 29 14 chrX 20362761 20363382 -156610758 - L1PB4 LINE L1 -79 6077 5448 * 5700 150 47 25 chrX 20363379 20363491 -156610649 + L1MA8 LINE L1 4243 4351 -1940 5658 113 20 6 chrX 20363491 20364616 -156609524 + L1PB1 LINE L1 5017 6150 -1 5700 150 47 25 chrX 20364616 20364668 -156609472 + L1MA8 LINE L1 4351 4400 -1891 1972 125 0 0 chrX 20364668 20364948 -156609192 + AluSx SINE Alu 1 280 -32 5700 150 47 25 chrX 20364948 20366615 -156607525 + L1MA8 LINE L1 4400 6126 -165 1589 162 101 0 chrX 20366615 20366942 -156607198 - MER46B DNA MER2_type 0 236 2 5700 150 47 25 chrX 20366942 20367109 -156607031 + L1MA8 LINE L1 6126 6288 -3 2281 83 0 52 chrX 20367428 20367755 -156606385 - AluSx SINE Alu -2 310 1 227 279 98 0 chrX 20368019 20368080 -156606060 + MIR SINE MIR 84 150 -112 249 128 0 0 chrX 20368188 20368235 -156605905 + (CA)n Simple_repeat Simple_repeat 2 48 0 2205 125 0 3 chrX 20369185 20369497 -156604643 + AluSq SINE Alu 1 311 -2 448 57 0 29 chrX 20369497 20369567 -156604573 + (GGGA)n Simple_repeat Simple_repeat 3 70 0 2134 120 7 0 chrX 20370167 20370467 -156603673 + AluSq SINE Alu 3 304 -9 2377 58 0 3 chrX 20370517 20370833 -156603307 + AluY SINE Alu 4 318 0 624 258 48 83 chrX 20370971 20371154 -156602986 + MIR SINE MIR 19 192 -70 443 215 58 29 chrX 20371154 20371326 -156602814 - MER104 DNA MER2_type -3 177 1 624 258 48 83 chrX 20371326 20371394 -156602746 + MIR SINE MIR 192 261 -1 389 291 115 18 chrX 20372157 20372322 -156601818 - MIR SINE MIR 0 262 82 318 123 0 0 chrX 20372324 20372381 -156601759 + (CA)n Simple_repeat Simple_repeat 1 57 0 296 137 20 0 chrX 20372483 20372534 -156601606 + L1MA3 LINE L1 6254 6305 0 2839 225 30 37 chrX 20372719 20373479 -156600661 - L1MD2 LINE L1 -2 6357 5603 1539 188 36 22 chrX 20373509 20373865 -156600275 - L1MA7 LINE L1 -1 6290 5930 1562 124 0 4 chrX 20373896 20374121 -156600019 - AluSq SINE Alu -89 224 1 1673 199 17 9 chrX 20374277 20374711 -156599429 - L1MCa LINE L1 -4422 2185 1691 782 300 72 62 chrX 20374719 20375206 -156598934 + LTR33 LTR ERVL 28 519 -2 22 0 0 0 chrX 20375750 20375772 -156598368 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 20376260 20376289 -156597851 + AT_rich Low_complexity Low_complexity 1 29 0 2300 214 42 67 chrX 20376769 20377951 -156596189 + L1MC/D LINE L1 4462 5605 -637 388 63 14 0 chrX 20377955 20378018 -156596122 + Alu SINE Alu 247 295 -7 306 0 0 0 chrX 20378417 20378451 -156595689 + (CA)n Simple_repeat Simple_repeat 2 35 0 216 0 0 0 chrX 20378993 20379017 -156595123 + (TC)n Simple_repeat Simple_repeat 2 25 0 226 191 0 0 chrX 20379101 20379143 -156594997 + MER69 DNA AcHobo 9 50 -1176 233 314 0 0 chrX 20379874 20379925 -156594215 + MER58 DNA MER1_type 1 51 -2369 4904 221 28 26 chrX 20379942 20381861 -156592279 - L1MD1 LINE L1 -25 6217 4288 * 6205 208 68 28 chrX 20381836 20383392 -156590748 - L1MC1 LINE L1 -6 6327 4834 1977 119 0 18 chrX 20383392 20383702 -156590438 - AluSx SINE Alu 0 305 1 6205 208 68 28 chrX 20383702 20385220 -156588920 - L1MC1 LINE L1 -1499 4834 3121 470 323 5 15 chrX 20386701 20386896 -156587244 + LTR33 LTR ERVL 328 520 -1 441 0 0 0 chrX 20387374 20387423 -156586717 + (CA)n Simple_repeat Simple_repeat 2 50 0 2538 214 127 38 chrX 20387435 20388349 -156585791 + L1MD2 LINE L1 890 1884 -4656 531 232 7 7 chrX 20388340 20388491 -156585649 + L1M4 LINE L1 3594 3744 -2402 * 1965 272 29 30 chrX 20388499 20388959 -156585181 + L1M4 LINE L1 3859 4319 -1827 782 179 26 0 chrX 20388959 20389115 -156585025 + L1MB1 LINE L1 6008 6167 -1 1965 272 29 30 chrX 20389115 20389408 -156584732 + L1M4 LINE L1 4319 4611 -1535 2278 120 6 8 chrX 20390119 20390476 -156583664 - L1PA16 LINE L1 -9 6157 5802 4189 180 21 26 chrX 20390477 20391390 -156582750 + L1 LINE L1 4427 5336 -810 1582 174 42 3 chrX 20391390 20391677 -156582463 - AluJb SINE Alu -14 298 1 4189 180 21 26 chrX 20391677 20391728 -156582412 + L1 LINE L1 5336 5386 -760 1627 203 4 0 chrX 20391777 20392058 -156582082 + AluJo SINE Alu 1 282 -30 492 209 5 105 chrX 20392231 20392441 -156581699 + L1MD2 LINE L1 4866 5054 -1486 1790 208 157 50 chrX 20392484 20393104 -156581036 + L1MD2 LINE L1 6073 6738 0 572 205 154 13 chrX 20393546 20393702 -156580438 - MER5A DNA MER1_type -1 188 11 305 206 147 0 chrX 20398233 20398335 -156575805 - MER69A DNA AcHobo -13 164 48 1434 85 25 0 chrX 20399659 20399860 -156574280 + L1PA13 LINE L1 5956 6161 -2 191 35 0 35 chrX 20400354 20400383 -156573757 + (TTG)n Simple_repeat Simple_repeat 2 29 0 333 267 0 23 chrX 20401991 20402077 -156572063 - L2 LINE L2 0 3272 3189 707 365 59 13 chrX 20402314 20402785 -156571355 - L2 LINE L2 -337 2977 2485 574 349 13 8 chrX 20404223 20404458 -156569682 - MIR SINE MIR -12 250 15 321 276 26 86 chrX 20405134 20405250 -156568890 + MER91C DNA MER1_type 14 122 -18 2355 88 3 0 chrX 20405499 20405804 -156568336 + AluSx SINE Alu 1 306 -6 23 33 0 0 chrX 20405886 20405916 -156568224 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chrX 20406091 20406135 -156568005 + AT_rich Low_complexity Low_complexity 1 44 0 1165 320 106 43 chrX 20406804 20407632 -156566508 + L2 LINE L2 1905 2810 -504 180 0 0 0 chrX 20407632 20407652 -156566488 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1165 320 106 43 chrX 20407652 20407832 -156566308 + L2 LINE L2 2810 2977 -337 4081 214 55 32 chrX 20408400 20409261 -156564879 + L1MD2 LINE L1 5254 6146 -213 210 37 0 0 chrX 20409261 20409288 -156564852 + (CA)n Simple_repeat Simple_repeat 1 27 0 4081 214 55 32 chrX 20409288 20409497 -156564643 + L1MD2 LINE L1 6146 6349 -10 246 268 0 0 chrX 20409890 20409946 -156564194 - L2 LINE L2 -4 3309 3254 306 402 61 12 chrX 20410222 20410548 -156563592 + L2 LINE L2 2633 2974 -340 315 0 0 0 chrX 20410962 20410997 -156563143 + (CA)n Simple_repeat Simple_repeat 2 36 0 189 363 37 22 chrX 20412721 20412856 -156561284 + L2 LINE L2 3177 3313 0 2215 112 0 0 chrX 20413410 20413705 -156560435 - AluSx SINE Alu -17 295 1 2119 124 0 6 chrX 20415006 20415320 -156558820 + AluSx SINE Alu 1 312 0 702 0 114 0 chrX 20415708 20415866 -156558274 + (TA)n Simple_repeat Simple_repeat 1 176 0 9396 141 28 14 chrX 20415892 20416545 -156557595 + L1M1 LINE L1 1575 2218 -5347 2083 129 0 10 chrX 20416545 20416848 -156557292 + AluSx SINE Alu 1 300 -12 9396 141 28 14 chrX 20416848 20417850 -156556290 + L1M1 LINE L1 2218 3252 -4313 3256 197 53 1 chrX 20417842 20418654 -156555486 + L1M1 LINE L1 4298 5151 -2414 * 241 181 85 21 chrX 20418860 20418954 -156555186 - L1MD3 LINE L1 0 7995 7896 489 326 76 42 chrX 20419045 20419428 -156554712 - L1M4 LINE L1 -1745 4401 4006 880 246 27 0 chrX 20419724 20419944 -156554196 - L1PA16 LINE L1 -5 6161 5936 2260 149 26 0 chrX 20419948 20420330 -156553810 - L1PA16 LINE L1 -5 6161 5770 3468 164 11 0 chrX 20420427 20421035 -156553105 - L1PA16 LINE L1 -3 7601 6987 2090 184 39 5 chrX 20421035 20421447 -156552693 + MSTB LTR MaLR 1 426 0 2642 208 86 57 chrX 20421447 20422480 -156551660 + MSTB-int LTR MaLR 1 1065 -515 * 9228 196 36 11 chrX 20422464 20424230 -156549910 - L1M1 LINE L1 -5736 1829 19 6530 224 32 5 chrX 20424231 20425819 -156548321 - L1PA16 LINE L1 -847 6737 5107 5095 161 16 9 chrX 20426148 20427091 -156547049 - L1MA5A LINE L1 -6 6291 5343 4893 113 4 1 chrX 20427497 20428229 -156545911 - L1PA14 LINE L1 0 6161 5428 13311 159 32 48 chrX 20428230 20431650 -156542490 - L1PA16 LINE L1 -3972 3612 1 216 175 0 0 chrX 20431718 20431758 -156542382 + (CA)n Simple_repeat Simple_repeat 1 40 0 1112 218 29 71 chrX 20432939 20433320 -156540820 - MLT1A1 LTR MaLR 0 365 1 413 347 47 0 chrX 20433641 20433834 -156540306 + MER69 DNA AcHobo 77 278 -2248 1765 214 92 37 chrX 20433836 20434832 -156539308 + MER69 DNA AcHobo 1460 2526 0 7516 30 0 1 chrX 20435665 20437152 -156536988 - L1PA4 LINE L1 -7 6148 4663 6683 33 4 0 chrX 20437152 20437965 -156536175 + L1PA4 LINE L1 3839 4654 -1492 22 0 0 0 chrX 20438140 20438162 -156535978 + AT_rich Low_complexity Low_complexity 1 22 0 10600 217 42 45 chrX 20438561 20440405 -156533735 - L1MB1 LINE L1 0 6404 4557 2278 108 3 0 chrX 20440405 20440711 -156533429 + AluSq SINE Alu 1 307 -6 10600 217 42 45 chrX 20440711 20441193 -156532947 - L1MB1 LINE L1 -1847 4557 4075 2067 112 7 14 chrX 20441193 20441488 -156532652 - AluSg SINE Alu -17 293 1 10600 217 42 45 chrX 20441488 20444882 -156529258 - L1MB1 LINE L1 -2329 4075 796 325 377 14 27 chrX 20445038 20445184 -156528956 - L1M3de LINE L1 -5224 667 524 421 330 28 64 chrX 20445252 20445482 -156528658 - L1M3de LINE L1 -5217 674 185 559 284 0 14 chrX 20445486 20445634 -156528506 - L1M3de LINE L1 -5735 156 11 252 0 0 0 chrX 20446642 20446670 -156527470 + (TA)n Simple_repeat Simple_repeat 2 29 0 2494 60 0 19 chrX 20446673 20446990 -156527150 - AluY SINE Alu 0 311 1 194 299 103 54 chrX 20447045 20447249 -156526891 - L2 LINE L2 -168 3104 2891 306 245 158 36 chrX 20447362 20447501 -156526639 + MIR3 SINE MIR 32 187 -21 204 97 0 0 chrX 20447892 20447923 -156526217 + (TG)n Simple_repeat Simple_repeat 1 31 0 285 108 31 15 chrX 20448246 20448311 -156525829 + (TA)n Simple_repeat Simple_repeat 1 66 0 492 203 136 8 chrX 20448476 20448594 -156525546 - MER5A DNA MER1_type -2 187 55 192 77 0 0 chrX 20448750 20448776 -156525364 + (CA)n Simple_repeat Simple_repeat 1 26 0 2161 117 47 33 chrX 20448831 20449190 -156524950 + THE1B LTR MaLR 1 364 0 1014 296 113 27 chrX 20449911 20450059 -156524081 - L1MC4a LINE L1 -1866 5942 5808 2268 162 50 21 chrX 20450059 20450479 -156523661 - MSTB1 LTR MaLR 0 432 1 1014 296 113 27 chrX 20450479 20450838 -156523302 - L1MC4a LINE L1 -2000 5808 5481 213 39 0 0 chrX 20450838 20450864 -156523276 + (TA)n Simple_repeat Simple_repeat 2 27 0 2479 65 0 0 chrX 20450864 20451158 -156522982 - AluY SINE Alu -17 294 1 1014 296 113 27 chrX 20451158 20451277 -156522863 - L1MC4a LINE L1 -2326 5482 5260 304 307 132 38 chrX 20451438 20451725 -156522415 - MLT1J LTR MaLR -185 326 13 6088 94 11 23 chrX 20453120 20454905 -156519235 + L1PA13 LINE L1 4388 6163 0 25 0 0 0 chrX 20454973 20454998 -156519142 + AT_rich Low_complexity Low_complexity 1 25 0 402 57 0 0 chrX 20455127 20455180 -156518960 + (TG)n Simple_repeat Simple_repeat 2 54 0 2250 149 3 3 chrX 20455362 20455751 -156518389 - L1MB3 LINE L1 -8 6175 5787 203 182 36 18 chrX 20455757 20455812 -156518328 + (TA)n Simple_repeat Simple_repeat 2 57 0 3960 156 39 10 chrX 20455812 20456538 -156517602 + Tigger2 DNA MER2_type 2 748 -1970 975 131 61 25 chrX 20456598 20456665 -156517475 + Tigger2 DNA MER2_type 2462 2525 -193 7157 29 1 0 chrX 20456665 20457528 -156516612 + L1PA3 LINE L1 5296 6159 0 975 131 61 25 chrX 20457528 20457657 -156516483 + Tigger2 DNA MER2_type 2525 2666 -52 12434 229 32 18 chrX 20457663 20463042 -156511098 - L1PB4 LINE L1 -6 6207 686 1147 301 50 19 chrX 20463023 20463490 -156510650 - L1PBb LINE L1 -5286 917 353 * 384 370 45 8 chrX 20463612 20463855 -156510285 - L1PBb LINE L1 -5847 357 106 788 362 58 26 chrX 20463937 20464592 -156509548 - L1M2b LINE L1 -5257 1952 1 354 210 0 0 chrX 20464603 20464671 -156509469 + Tigger2 DNA MER2_type 2650 2708 -10 2475 194 16 27 chrX 20464690 20465589 -156508551 - L1M3 LINE L1 -401 5782 4891 2199 51 0 0 chrX 20466900 20467176 -156506964 + AluY SINE Alu 30 311 0 405 326 79 11 chrX 20469350 20469540 -156504600 - LTR16A LTR ERVL -160 290 88 8728 162 18 161 chrX 20471127 20472921 -156501219 + L1PA13 LINE L1 1904 3153 -2993 3093 35 0 68 chrX 20472921 20473349 -156500791 - L1PA5 LINE L1 -5 6149 5751 8728 162 18 161 chrX 20473349 20474362 -156499778 + L1PA13 LINE L1 3153 4309 -1837 5247 128 47 11 chrX 20474363 20475293 -156498847 + L1PA13 LINE L1 5199 6163 0 351 206 53 15 chrX 20475559 20475690 -156498450 + (TA)n Simple_repeat Simple_repeat 2 137 0 268 192 0 0 chrX 20476646 20476698 -156497442 + L1MC4 LINE L1 6652 6703 -1339 261 204 0 82 chrX 20476670 20476768 -156497372 - L1MC4 LINE L1 -1339 6703 6614 * 226 326 0 0 chrX 20476700 20476789 -156497351 + L1MC4 LINE L1 6614 6702 -1340 * 233 245 21 11 chrX 20476966 20477060 -156497080 + L1MC4 LINE L1 6614 6708 -1334 402 333 55 6 chrX 20477394 20477559 -156496581 + MIR SINE MIR 86 258 -4 367 317 87 12 chrX 20477590 20477751 -156496389 + MIR SINE MIR 86 258 -4 223 159 14 72 chrX 20478438 20478507 -156495633 + CT-rich Low_complexity Low_complexity 2 66 0 254 246 0 18 chrX 20480522 20480632 -156493508 + (CATA)n Simple_repeat Simple_repeat 1 108 0 477 283 86 30 chrX 20480993 20481226 -156492914 - L2 LINE L2 -21 3292 3047 236 264 44 11 chrX 20481433 20481524 -156492616 - MLT1J2 LTR MaLR -289 161 68 21 0 0 0 chrX 20481603 20481624 -156492516 + AT_rich Low_complexity Low_complexity 1 21 0 5162 64 8 0 chrX 20483067 20483737 -156490403 + L1PA7 LINE L1 5477 6151 -3 225 0 0 0 chrX 20483742 20483767 -156490373 + (TA)n Simple_repeat Simple_repeat 1 25 0 9612 167 23 32 chrX 20483767 20486340 -156487800 - L1PA15 LINE L1 -25 6140 3596 2103 81 53 0 chrX 20486340 20486623 -156487517 + AluY SINE Alu 1 298 -13 9612 167 23 32 chrX 20486623 20486901 -156487239 - L1PA15 LINE L1 -2569 3596 3317 225 345 48 90 chrX 20487348 20487493 -156486647 + MIR SINE MIR 2 140 -122 867 220 22 0 chrX 20489447 20489629 -156484511 - MER5A DNA MER1_type 0 189 4 864 329 165 29 chrX 20489642 20490299 -156483841 + L2 LINE L2 2555 3313 0 243 299 28 37 chrX 20493863 20493970 -156480170 + 7SK RNA RNA 3 108 -85 186 48 24 48 chrX 20494980 20495022 -156479118 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 220 327 0 0 chrX 20495042 20495097 -156479043 + (CATG)n Simple_repeat Simple_repeat 3 57 0 200 86 29 0 chrX 20495115 20495150 -156478990 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1760 183 0 10 chrX 20495509 20495821 -156478319 + AluJo SINE Alu 3 311 -1 256 361 0 0 chrX 20497314 20497375 -156476765 - L3 LINE CR1 -936 641 581 185 222 28 0 chrX 20497418 20497454 -156476686 - MIR SINE MIR -7 255 219 274 281 107 16 chrX 20497547 20497668 -156476472 - MIR SINE MIR -73 189 58 297 175 0 75 chrX 20498385 20498465 -156475675 - MIR SINE MIR -66 196 123 2167 114 0 0 chrX 20500072 20500361 -156473779 + AluSx SINE Alu 1 289 -23 875 251 5 14 chrX 20500397 20500616 -156473524 - MER20 DNA MER1_type 0 219 3 394 329 32 19 chrX 20500800 20500958 -156473182 + MER5A DNA MER1_type 4 163 -26 308 299 36 44 chrX 20500836 20500973 -156473167 - MER5A DNA MER1_type -30 159 24 * 28 61 0 0 chrX 20501285 20501334 -156472806 + AT_rich Low_complexity Low_complexity 1 49 0 2850 201 13 18 chrX 20502125 20502172 -156471968 - MLT2B3 LTR ERVL 0 554 508 603 117 0 0 chrX 20502172 20502266 -156471874 + (CAGA)n Simple_repeat Simple_repeat 3 96 0 2850 201 13 18 chrX 20502266 20502775 -156471365 - MLT2B3 LTR ERVL -46 508 1 31 26 0 0 chrX 20502877 20502915 -156471225 + AT_rich Low_complexity Low_complexity 1 38 0 5675 48 1 0 chrX 20503750 20504443 -156469697 - L1PA5 LINE L1 -3 6151 5458 905 9 9 0 chrX 20504443 20504555 -156469585 + L1PA5 LINE L1 5345 5457 -697 261 321 151 0 chrX 20505283 20505442 -156468698 + L2 LINE L2 3116 3298 -15 979 163 42 0 chrX 20505960 20506150 -156467990 + L1MA4 LINE L1 6088 6285 -15 5643 148 7 60 chrX 20506174 20507266 -156466874 + L1MC1 LINE L1 5299 6332 -1 5110 143 26 6 chrX 20507971 20508820 -156465320 + L1PB1 LINE L1 1084 1949 -4914 5919 118 31 0 chrX 20508830 20509853 -156464287 + L1PB1 LINE L1 5816 6864 -3 520 243 36 18 chrX 20510321 20510484 -156463656 - MIR SINE MIR 0 262 99 249 294 83 78 chrX 20510663 20510843 -156463297 + MIR3 SINE MIR 23 203 -5 6042 95 21 4 chrX 20512193 20513089 -156461051 + L1PA12 LINE L1 5260 6168 0 1708 188 11 6 chrX 20513087 20513438 -156460702 + L1P LINE L1 4364 4716 -1430 * 3219 166 8 0 chrX 20513437 20514028 -156460112 - L1PA13 LINE L1 -1566 5231 4636 641 278 78 36 chrX 20514013 20514286 -156459854 - L1MDa LINE L1 -4317 2223 1930 * 1896 9 0 0 chrX 20514286 20514503 -156459637 - L1PA2 LINE L1 -4 6151 5935 641 278 78 36 chrX 20514503 20514589 -156459551 - L1MDa LINE L1 -4610 1930 1849 2755 16 0 0 chrX 20515095 20515405 -156458735 + AluYb8 SINE Alu 1 310 -8 2435 62 0 13 chrX 20516068 20516375 -156457765 + AluY SINE Alu 1 303 -8 5958 111 6 0 chrX 20516705 20517812 -156456328 - L1PA12 LINE L1 -15 6153 5044 1300 186 0 4 chrX 20517818 20518087 -156456053 - L1 LINE L1 -1299 5498 5231 446 240 41 0 chrX 20518088 20518209 -156455931 + L1M4 LINE L1 2597 2722 -3424 * 713 183 0 0 chrX 20518203 20518334 -156455806 + L1P LINE L1 4212 4342 -1804 13412 201 15 16 chrX 20518342 20519528 -156454612 - L1PA13 LINE L1 -2343 4454 3268 2149 122 3 0 chrX 20519528 20519832 -156454308 - AluSq SINE Alu -8 305 1 13412 201 15 16 chrX 20519832 20522290 -156451850 - L1PA13 LINE L1 -3529 3268 839 252 0 0 0 chrX 20522290 20522318 -156451822 + (CA)n Simple_repeat Simple_repeat 2 29 0 13412 201 15 16 chrX 20522318 20523157 -156450983 - L1PA13 LINE L1 -5958 839 1 1393 264 10 12 chrX 20523172 20523680 -156450460 - L1M4 LINE L1 -2573 3573 3067 1377 192 95 6 chrX 20523693 20524010 -156450130 + L1MD2 LINE L1 6011 6355 -4 294 233 27 0 chrX 20523994 20524067 -156450073 + L1MEc LINE L1 1614 1688 -4708 * 2055 159 35 43 chrX 20524068 20524618 -156449522 - MLT2A2 LTR ERVL 0 554 1 254 234 65 19 chrX 20524745 20524852 -156449288 + L1MEc LINE L1 1849 1960 -4436 343 292 196 3 chrX 20524903 20525276 -156448864 + L1MEc LINE L1 2229 2673 -3542 1107 335 88 44 chrX 20525281 20526241 -156447899 + L2 LINE L2 1960 2961 -353 308 352 208 0 chrX 20526375 20526500 -156447640 + L2 LINE L2 3122 3272 0 227 200 0 0 chrX 20526779 20526824 -156447316 - L2 LINE L2 0 3313 3269 515 357 98 32 chrX 20526881 20527453 -156446687 - L2 LINE L2 -60 3253 2641 23 33 0 0 chrX 20527539 20527569 -156446571 + AT_rich Low_complexity Low_complexity 1 30 0 1877 231 70 58 chrX 20528183 20528246 -156445894 - L1ME1 LINE L1 -2 6164 6103 204 40 0 0 chrX 20528246 20528271 -156445869 + (CA)n Simple_repeat Simple_repeat 2 26 0 1877 231 70 58 chrX 20528271 20528892 -156445248 - L1ME1 LINE L1 -63 6103 5472 637 300 74 4 chrX 20528935 20529178 -156444962 - MIR SINE MIR 0 262 3 1314 266 32 5 chrX 20529309 20529718 -156444422 - Charlie4a DNA MER1_type -75 433 14 193 397 0 0 chrX 20529755 20529828 -156444312 + L2 LINE L2 3173 3245 -27 219 413 22 0 chrX 20529861 20529953 -156444187 - L2 LINE L2 -43 3229 3136 380 268 58 36 chrX 20529994 20530132 -156444008 + MIR SINE MIR 61 201 -61 1098 262 95 40 chrX 20530427 20531080 -156443060 + L1M4c LINE L1 2851 3539 -4026 905 136 0 8 chrX 20531082 20531214 -156442926 + FLAM_C SINE Alu 1 131 -12 1745 254 34 30 chrX 20531217 20531454 -156442686 + L1M4c LINE L1 3510 3744 -3821 2227 111 0 7 chrX 20531454 20531760 -156442380 + AluSx SINE Alu 1 304 -8 1745 254 34 30 chrX 20531760 20532172 -156441968 + L1M4c LINE L1 3744 4160 -3405 6102 159 31 4 chrX 20532179 20534195 -156439945 - L1PB2 LINE L1 0 6151 4086 10840 191 26 26 chrX 20534214 20535841 -156438299 + L1MA9 LINE L1 2988 4613 -1935 2907 140 35 29 chrX 20535841 20536354 -156437786 - L1MA4 LINE L1 -6 6294 5776 180 0 0 0 chrX 20536354 20536374 -156437766 + (TA)n Simple_repeat Simple_repeat 1 20 0 2907 140 35 29 chrX 20536374 20536411 -156437729 - L1MA4 LINE L1 -524 5776 5741 10840 191 26 26 chrX 20536411 20536517 -156437623 + L1MA9 LINE L1 4613 4717 -1831 2391 82 0 0 chrX 20536517 20536821 -156437319 - AluSx SINE Alu -8 304 1 10840 191 26 26 chrX 20536821 20538607 -156435533 + L1MA9 LINE L1 4717 6515 -33 263 386 0 7 chrX 20538649 20538794 -156435346 - L2 LINE L2 -317 2955 2812 279 0 0 0 chrX 20539133 20539164 -156434976 + (CA)n Simple_repeat Simple_repeat 1 31 0 324 0 0 0 chrX 20541180 20541216 -156432924 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 222 37 0 0 chrX 20543397 20543424 -156430716 + (CA)n Simple_repeat Simple_repeat 1 27 0 779 305 30 121 chrX 20543723 20544679 -156429461 + L3 LINE CR1 429 1297 -280 204 276 79 13 chrX 20544789 20544865 -156429275 + L3 LINE CR1 1495 1575 -2 883 253 125 16 chrX 20544949 20545254 -156428886 + MER58B DNA MER1_type 2 339 -2 282 217 193 0 chrX 20548568 20548651 -156425489 - L2 LINE L2 -1 3271 3173 180 368 15 15 chrX 20549322 20549390 -156424750 + MIR3 SINE MIR 132 199 -9 270 167 0 0 chrX 20549574 20549634 -156424506 + (TA)n Simple_repeat Simple_repeat 2 61 0 2075 290 49 10 chrX 20549749 20550541 -156423599 - L1ME3A LINE L1 0 6170 5348 334 384 24 6 chrX 20550788 20550952 -156423188 - MIR3 SINE MIR -3 205 39 2041 109 22 0 chrX 20551181 20551491 -156422649 + AluSg SINE Alu 1 316 0 263 345 26 0 chrX 20551746 20551862 -156422278 - MIR SINE MIR -48 214 96 330 339 68 41 chrX 20552800 20553095 -156421045 + L2 LINE L2 2549 2851 -463 3393 123 66 11 chrX 20555200 20555762 -156418378 - MER51A LTR ERV1 -41 593 1 378 107 0 0 chrX 20555784 20555840 -156418300 + (A)n Simple_repeat Simple_repeat 1 56 0 2392 86 3 15 chrX 20555927 20556265 -156417875 - L1PB2 LINE L1 0 6151 5818 255 265 12 0 chrX 20557102 20557185 -156416955 + HAL1 LINE L1 62 145 -2362 502 299 10 18 chrX 20557201 20557393 -156416747 - L1MD3 LINE L1 -926 6882 6655 397 325 89 37 chrX 20557520 20557957 -156416183 - L1ME3A LINE L1 -1450 4696 4237 234 286 0 0 chrX 20558033 20558103 -156416037 - L1ME3A LINE L1 -1975 4171 4102 261 57 0 0 chrX 20558194 20558229 -156415911 + (CA)n Simple_repeat Simple_repeat 2 36 0 389 274 12 61 chrX 20558320 20558565 -156415575 + HAL1 LINE L1 810 1042 -1465 * 3635 223 33 7 chrX 20558562 20559506 -156414634 + L1M4 LINE L1 4010 4977 -1169 1215 286 110 18 chrX 20559760 20560488 -156413652 + L2 LINE L2 2366 3166 -147 239 209 22 77 chrX 20560462 20560553 -156413587 - L2 LINE L2 -100 3213 3128 * 251 292 0 0 chrX 20561712 20561801 -156412339 - L1MC4 LINE L1 -1337 6705 6617 233 154 39 19 chrX 20561807 20561859 -156412281 + L1MCa LINE L1 2016 2068 -4358 * 263 253 23 0 chrX 20561840 20561927 -156412213 - L1MC4 LINE L1 -1339 6703 6615 245 207 17 0 chrX 20561895 20561953 -156412187 + L1MCa LINE L1 2006 2064 -4362 * 315 292 0 0 chrX 20561952 20562041 -156412099 - L1MC4 LINE L1 -1339 6703 6615 246 289 0 0 chrX 20562040 20562130 -156412010 + L1MC4 LINE L1 6614 6703 -1339 * 251 322 0 0 chrX 20562126 20562216 -156411924 - L1MC4 LINE L1 -1339 6703 6614 232 260 0 62 chrX 20562160 20562256 -156411884 + L1MC4 LINE L1 6614 6703 -1339 * 569 260 0 11 chrX 20562297 20562478 -156411662 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 1730 132 7 30 chrX 20562583 20562878 -156411262 + AluSx SINE Alu 1 288 -24 183 80 0 0 chrX 20563383 20563408 -156410732 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2169 88 0 3 chrX 20563837 20564121 -156410019 - AluSq SINE Alu -30 283 1 5209 163 33 1 chrX 20564712 20565066 -156409074 - L1PB3 LINE L1 0 6154 5813 293 0 27 0 chrX 20565066 20565103 -156409037 + (TG)n Simple_repeat Simple_repeat 2 39 0 5209 163 33 1 chrX 20565103 20566070 -156408070 - L1PB3 LINE L1 -341 5813 4793 2598 75 119 5 chrX 20566442 20566844 -156407296 - LTR7 LTR ERV1 -2 448 1 3342 57 9 7 chrX 20567433 20567875 -156406265 - LTR7 LTR ERV1 -7 443 1 287 310 50 66 chrX 20568042 20568284 -156405856 + MLT1L LTR MaLR 1 238 -377 183 42 0 0 chrX 20568818 20568842 -156405298 + (A)n Simple_repeat Simple_repeat 1 24 0 360 324 58 79 chrX 20569388 20569487 -156404653 - MIR SINE MIR -6 256 156 2264 92 0 16 chrX 20569487 20569804 -156404336 - AluSx SINE Alu 0 312 1 360 324 58 79 chrX 20569804 20569945 -156404195 - MIR SINE MIR -106 156 21 2090 130 3 0 chrX 20570432 20570740 -156403400 - AluSp SINE Alu -4 309 1 21 57 0 0 chrX 20570773 20570808 -156403332 + AT_rich Low_complexity Low_complexity 1 35 0 616 263 58 58 chrX 20571622 20571930 -156402210 - LTR33 LTR ERVL -2 519 212 4502 57 3 20 chrX 20571935 20572519 -156401621 + LTR10C LTR ERV1 11 584 -7 560 188 30 0 chrX 20573133 20573234 -156400906 + MER3 DNA MER1_type 10 113 -96 2292 94 3 13 chrX 20573235 20573542 -156400598 + AluSx SINE Alu 1 304 -8 2206 118 3 3 chrX 20574344 20574648 -156399492 + AluSq SINE Alu 1 304 -9 2600 52 0 0 chrX 20574876 20575185 -156398955 + AluY SINE Alu 1 309 -2 2287 103 0 3 chrX 20576314 20576625 -156397515 - AluSx SINE Alu -2 310 1 287 301 98 16 chrX 20576810 20576933 -156397207 + L2 LINE L2 3139 3271 -1 29 60 0 0 chrX 20577264 20577314 -156396826 + AT_rich Low_complexity Low_complexity 1 50 0 190 319 34 92 chrX 20577697 20577816 -156396324 - L2 LINE L2 -39 3233 3122 2217 102 0 3 chrX 20577975 20578301 -156395839 + AluSx SINE Alu 1 312 0 183 367 33 17 chrX 20578399 20578519 -156395621 - L2 LINE L2 -563 2751 2630 251 287 50 20 chrX 20580195 20580296 -156393844 + MIR SINE MIR 88 191 -71 313 233 11 0 chrX 20580734 20580824 -156393316 + (TATAA)n Simple_repeat Simple_repeat 5 95 0 668 184 0 0 chrX 20581613 20581727 -156392413 - FLAM_A SINE Alu -18 124 11 2389 75 0 3 chrX 20581792 20582085 -156392055 + AluSc SINE Alu 7 298 -11 27 62 0 0 chrX 20582384 20582432 -156391708 + AT_rich Low_complexity Low_complexity 1 48 0 1092 46 0 0 chrX 20582450 20582580 -156391560 - AluY SINE Alu -15 296 167 1737 149 54 14 chrX 20582805 20583100 -156391040 + AluSx SINE Alu 1 307 -5 488 271 138 29 chrX 20583352 20583562 -156390578 - MIR SINE MIR -1 261 29 238 184 26 0 chrX 20584326 20584402 -156389738 + (TA)n Simple_repeat Simple_repeat 1 78 0 4262 71 5 13 chrX 20586228 20586873 -156387267 + LTR8 LTR ERV1 1 691 0 45315 75 23 11 chrX 20586873 20588086 -156386054 + HUERS-P1 LTR ERV1 1 1199 -5064 222 37 0 0 chrX 20588086 20588113 -156386027 + (TC)n Simple_repeat Simple_repeat 2 28 0 45315 75 23 11 chrX 20588113 20589561 -156384579 + HUERS-P1 LTR ERV1 1199 2629 -3634 2213 98 0 46 chrX 20589561 20589888 -156384252 + AluSx SINE Alu 1 312 0 45315 75 23 11 chrX 20589888 20590133 -156384007 + HUERS-P1 LTR ERV1 2629 2870 -3393 312 48 0 0 chrX 20590133 20590175 -156383965 + (TG)n Simple_repeat Simple_repeat 1 42 0 45315 75 23 11 chrX 20590175 20591838 -156382302 + HUERS-P1 LTR ERV1 2870 4513 -1750 2105 66 77 7 chrX 20591838 20592111 -156382029 + AluSp SINE Alu 1 292 -21 45315 75 23 11 chrX 20592111 20593730 -156380410 + HUERS-P1 LTR ERV1 4513 6263 0 5158 75 22 0 chrX 20593730 20594406 -156379734 + LTR8 LTR ERV1 1 691 0 281 320 20 10 chrX 20594564 20594664 -156379476 - MER81 DNA DNA -13 101 1 4303 122 6 51 chrX 20594749 20595457 -156378683 - LTR8 LTR ERV1 -15 676 1 2081 145 100 35 chrX 20595540 20595638 -156378502 - MSTC LTR MaLR -1 427 337 3735 159 26 31 chrX 20595638 20596369 -156377771 - LTR8A LTR ERV1 0 727 1 2081 145 100 35 chrX 20596369 20596671 -156377469 - MSTC LTR MaLR -91 337 1 2963 113 2 5 chrX 20596740 20597175 -156376965 - MER57B LTR ERV1 0 434 1 2193 89 0 4 chrX 20597277 20597600 -156376540 - AluSq SINE Alu 0 326 5 398 326 74 19 chrX 20597658 20597873 -156376267 + MIR SINE MIR 36 262 0 2267 121 0 0 chrX 20598704 20599017 -156375123 - AluSq SINE Alu 0 313 1 1702 117 121 15 chrX 20599710 20599983 -156374157 - AluSx SINE Alu 0 302 1 583 244 24 8 chrX 20599985 20600112 -156374028 - MIR SINE MIR -114 148 20 351 78 0 0 chrX 20600428 20600479 -156373661 + (TA)n Simple_repeat Simple_repeat 1 51 0 315 0 0 0 chrX 20600478 20600513 -156373627 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 24 67 0 0 chrX 20600561 20600606 -156373534 + AT_rich Low_complexity Low_complexity 1 45 0 185 277 27 80 chrX 20602383 20602495 -156371645 + L2 LINE L2 2380 2485 -829 188 315 45 56 chrX 20602767 20602856 -156371284 + MER5B DNA MER1_type 1 88 -90 307 294 20 29 chrX 20602885 20602987 -156371153 - MER5A DNA MER1_type 0 189 89 2235 83 0 14 chrX 20603272 20603596 -156370544 - AluSx SINE Alu 0 320 1 210 222 0 0 chrX 20604655 20604691 -156369449 + polypyrimidine Low_complexity Low_complexity 1 36 0 2138 112 17 0 chrX 20604691 20604985 -156369155 - AluSx SINE Alu -13 299 1 2094 129 0 0 chrX 20606230 20606548 -156367592 - AluSx SINE Alu 0 318 1 235 347 35 35 chrX 20607329 20607473 -156366667 + MER5B DNA MER1_type 33 176 -2 2176 96 0 0 chrX 20608378 20608659 -156365481 + AluSx SINE Alu 1 281 -31 186 43 0 0 chrX 20608664 20608687 -156365453 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 254 270 0 0 chrX 20610180 20610243 -156363897 - MER103 DNA DNA -86 80 18 2244 102 0 13 chrX 20610298 20610602 -156363538 - AluSq SINE Alu -11 302 3 2145 180 97 5 chrX 20610680 20611124 -156363016 + MER31A LTR ERV1 1 485 0 306 115 0 0 chrX 20611746 20611798 -156362342 + (GA)n Simple_repeat Simple_repeat 1 52 0 1696 241 96 46 chrX 20612007 20612552 -156361588 + L1ME3 LINE L1 5075 5591 -571 1671 158 7 59 chrX 20612552 20612856 -156361284 + AluJb SINE Alu 1 288 -24 1696 241 96 46 chrX 20612856 20612977 -156361163 + L1ME3 LINE L1 5591 5704 -458 2314 103 0 3 chrX 20612977 20613287 -156360853 + AluSx SINE Alu 3 311 -1 1696 241 96 46 chrX 20613287 20613549 -156360591 + L1ME3 LINE L1 5704 6047 -115 255 61 0 0 chrX 20614441 20614474 -156359666 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2345 89 0 6 chrX 20614492 20614805 -156359335 + AluSq SINE Alu 1 311 -2 553 277 32 72 chrX 20615089 20615133 -156359007 - MIR SINE MIR -11 251 207 459 250 140 0 chrX 20615133 20615297 -156358843 + MER5A DNA MER1_type 3 189 0 553 277 32 72 chrX 20615297 20615501 -156358639 - MIR SINE MIR -55 207 13 617 318 165 18 chrX 20615800 20616618 -156357522 + L2 LINE L2 1739 2754 -560 207 218 0 0 chrX 20616893 20616948 -156357192 + (TA)n Simple_repeat Simple_repeat 1 55 0 336 356 66 52 chrX 20617076 20617365 -156356775 + L2 LINE L2 2565 2857 -457 2484 74 0 6 chrX 20617602 20617914 -156356226 - AluSg SINE Alu 0 310 1 276 361 101 0 chrX 20617944 20618063 -156356077 + L2 LINE L2 3106 3236 -36 840 252 10 101 chrX 20618118 20618267 -156355873 + LTR37B LTR ERV1 17 178 -290 1232 129 9 14 chrX 20618267 20618477 -156355663 - L1MA2 LINE L1 -6 6298 6090 840 252 10 101 chrX 20618477 20618744 -156355396 + LTR37B LTR ERV1 178 395 -73 2312 96 0 3 chrX 20619282 20619584 -156354556 + AluSx SINE Alu 1 301 -11 2092 132 0 0 chrX 20619719 20620023 -156354117 + AluSx SINE Alu 1 304 -8 24 77 0 0 chrX 20621455 20621507 -156352633 + AT_rich Low_complexity Low_complexity 1 52 0 2315 87 0 13 chrX 20622512 20622822 -156351318 - AluSx SINE Alu -4 308 3 198 226 61 104 chrX 20623406 20623521 -156350619 - L2 LINE L2 -896 2418 2309 621 278 49 19 chrX 20624048 20624253 -156349887 + MIR SINE MIR 34 244 -18 200 259 74 115 chrX 20624568 20624737 -156349403 + MIR3 SINE MIR 10 173 -70 429 95 0 0 chrX 20625896 20625959 -156348181 + (TG)n Simple_repeat Simple_repeat 2 64 0 214 195 52 78 chrX 20626048 20626125 -156348015 + MIR SINE MIR 116 190 -72 2287 90 0 0 chrX 20626816 20627105 -156347035 - AluSx SINE Alu -21 291 3 238 191 0 0 chrX 20627247 20627294 -156346846 - Alu SINE Alu -253 49 3 1618 6 0 0 chrX 20627573 20627755 -156346385 + L1PA4 LINE L1 5972 6153 -2 1567 243 11 60 chrX 20630382 20630967 -156343173 - L1MCc LINE L1 -4887 1536 1014 251 235 24 71 chrX 20630962 20631047 -156343093 - L1MCc LINE L1 -5650 773 693 * 1395 275 50 7 chrX 20631208 20631652 -156342488 - L1MCc LINE L1 -5944 479 17 22 35 0 0 chrX 20631793 20631822 -156342318 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chrX 20632076 20632097 -156342043 + (GGGTG)n Simple_repeat Simple_repeat 4 24 0 2176 112 3 3 chrX 20632426 20632729 -156341411 - AluSx SINE Alu -9 303 1 273 119 0 0 chrX 20634590 20634632 -156339508 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 304 379 24 12 chrX 20634721 20634969 -156339171 + L1ME LINE L1 5487 5737 -384 25 31 0 0 chrX 20635218 20635250 -156338890 + AT_rich Low_complexity Low_complexity 1 32 0 195 69 0 0 chrX 20635288 20635317 -156338823 + (TC)n Simple_repeat Simple_repeat 2 30 0 809 302 14 0 chrX 20636502 20636724 -156337416 - MIR SINE MIR -16 246 22 370 337 19 6 chrX 20636792 20636961 -156337179 - MIR3 SINE MIR -10 198 25 287 225 337 0 chrX 20636976 20637065 -156337075 - MIR SINE MIR -108 154 36 247 280 15 30 chrX 20637277 20637409 -156336731 + (TA)n Simple_repeat Simple_repeat 1 130 0 2366 37 3 30 chrX 20637713 20638013 -156336127 - AluY SINE Alu -19 292 1 572 292 82 50 chrX 20639015 20639357 -156334783 - MLT1I LTR MaLR 0 409 57 1826 124 11 11 chrX 20639633 20639951 -156334189 - AluSg SINE Alu 0 318 1 359 344 6 55 chrX 20640149 20640312 -156333828 - LTR16C LTR ERVL -266 225 71 540 286 77 6 chrX 20641316 20641484 -156332656 - MIR SINE MIR -58 204 25 211 284 15 45 chrX 20642380 20642447 -156331693 - L2 LINE L2 -1 3271 3207 207 114 0 0 chrX 20642549 20642584 -156331556 + (TG)n Simple_repeat Simple_repeat 2 36 0 275 369 40 13 chrX 20643181 20643330 -156330810 + L2 LINE L2 2910 3062 -210 1954 195 40 42 chrX 20643550 20644052 -156330088 - MLT1D LTR MaLR -2 503 3 311 295 32 0 chrX 20644118 20644213 -156329927 - L2 LINE L2 -1 3271 3174 2293 45 72 0 chrX 20644736 20645026 -156329114 - AluY SINE Alu 0 311 1 1593 193 0 20 chrX 20645221 20645516 -156328624 + AluJo SINE Alu 1 289 -23 208 380 141 0 chrX 20645870 20646146 -156327994 + L2 LINE L2 2995 3309 -4 22 0 0 0 chrX 20647382 20647404 -156326736 + AT_rich Low_complexity Low_complexity 1 22 0 257 314 70 0 chrX 20648105 20648191 -156325949 + MER91C DNA MER1_type 14 105 -35 30 45 0 0 chrX 20648496 20648540 -156325600 + AT_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chrX 20649614 20649645 -156324495 + AT_rich Low_complexity Low_complexity 1 31 0 201 289 89 22 chrX 20650038 20650128 -156324012 - L2 LINE L2 -18 3295 3200 1990 127 0 0 chrX 20650405 20650688 -156323452 - AluSx SINE Alu -29 283 1 21 0 0 0 chrX 20653452 20653473 -156320667 + AT_rich Low_complexity Low_complexity 1 21 0 4949 88 0 0 chrX 20654532 20655192 -156318948 - PABL_A LTR ERV1 0 660 1 5055 75 7 1 chrX 20655396 20656074 -156318066 - L1PA13 LINE L1 0 6163 5482 309 197 0 0 chrX 20657210 20657276 -156316864 + (CA)n Simple_repeat Simple_repeat 2 67 0 1831 144 49 3 chrX 20658191 20658517 -156315623 - MER47A DNA MER2_type 0 366 26 292 372 101 65 chrX 20659378 20659776 -156314364 - L2 LINE L2 -7 3265 2854 925 219 0 0 chrX 20660077 20660241 -156313899 - MER5A DNA MER1_type -23 166 3 1053 191 40 4 chrX 20660451 20660676 -156313464 - MER46A DNA MER2_type -2 234 2 246 270 22 0 chrX 20660691 20660780 -156313360 - L1MC4 LINE L1 -1337 6705 6615 233 255 0 0 chrX 20660781 20660832 -156313308 + (TA)n Simple_repeat Simple_repeat 2 52 0 230 218 0 0 chrX 20660833 20660888 -156313252 - L1MC4 LINE L1 -1339 6703 6649 230 226 19 17 chrX 20660884 20660989 -156313151 - L1MCa LINE L1 -1337 6985 1995 * 253 246 0 75 chrX 20660905 20661039 -156313101 + L1MC4 LINE L1 6614 6703 -1339 6197 96 14 2 chrX 20711080 20712434 -156261706 + L1PA13 LINE L1 4798 6161 -2 183 174 109 22 chrX 20713063 20713109 -156261031 + L3 LINE CR1 577 626 -951 2217 117 7 0 chrX 20713813 20714122 -156260018 - AluSx SINE Alu -1 311 1 2178 121 0 0 chrX 20714543 20714850 -156259290 + AluSg SINE Alu 1 307 -3 23 33 0 0 chrX 20715210 20715240 -156258900 + AT_rich Low_complexity Low_complexity 1 30 0 240 286 33 33 chrX 20716056 20716147 -156257993 + L2 LINE L2 3182 3272 0 606 280 90 53 chrX 20716522 20716759 -156257381 + MIR SINE MIR 5 261 -1 240 111 0 0 chrX 20716768 20716804 -156257336 + (CTA)n Simple_repeat Simple_repeat 3 38 0 736 87 9 9 chrX 20717553 20717668 -156256472 + (TCTA)n Simple_repeat Simple_repeat 1 115 0 417 39 0 0 chrX 20717676 20717727 -156256413 + (TG)n Simple_repeat Simple_repeat 2 52 0 327 25 0 0 chrX 20718825 20718865 -156255275 + (TG)n Simple_repeat Simple_repeat 2 41 0 639 270 6 6 chrX 20720011 20720189 -156253951 - MER5B DNA MER1_type 0 178 1 312 276 50 44 chrX 20720682 20720863 -156253277 + L1ME LINE L1 2927 3108 -3038 288 361 54 31 chrX 20721016 20721534 -156252606 + L1ME LINE L1 3691 4220 -1926 25 31 0 0 chrX 20721628 20721660 -156252480 + AT_rich Low_complexity Low_complexity 1 32 0 2242 87 0 3 chrX 20722069 20722367 -156251773 + AluSx SINE Alu 1 297 -15 1317 212 38 7 chrX 20722810 20723103 -156251037 + L1PB4 LINE L1 5852 6153 -3 313 307 83 19 chrX 20723230 20723435 -156250705 + L1ME LINE L1 5568 5785 -2023 26 0 0 0 chrX 20723583 20723609 -156250531 + AT_rich Low_complexity Low_complexity 1 26 0 228 279 116 6 chrX 20723800 20723972 -156250168 - HAL1 LINE L1 -90 2417 2227 2346 101 0 0 chrX 20724403 20724709 -156249431 - AluSx SINE Alu -1 311 6 410 264 22 0 chrX 20725130 20725221 -156248919 - LTR28 LTR ERV1 -11 1009 917 5413 152 17 5 chrX 20725227 20726543 -156247597 - L1PA16 LINE L1 -78 6088 4758 1490 147 24 0 chrX 20726569 20726821 -156247319 - L1MA9 LINE L1 -32 6280 6023 * 1875 204 74 4 chrX 20726817 20727279 -156246861 - L1 LINE L1 -1371 4775 4282 1673 234 5 13 chrX 20727281 20727678 -156246462 - MER45B DNA AcHobo -242 798 405 320 245 20 59 chrX 20727689 20727791 -156246349 - L1MC4 LINE L1 -1337 6705 6608 541 294 94 0 chrX 20728848 20729008 -156245132 - MER5B DNA MER1_type 0 178 4 255 103 0 0 chrX 20729267 20729306 -156244834 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 344 289 134 53 chrX 20729541 20729825 -156244315 + LTR33 LTR ERVL 47 353 -168 2285 84 3 3 chrX 20730563 20730861 -156243279 + AluSp SINE Alu 1 298 -15 226 314 20 0 chrX 20731423 20731525 -156242615 + L1ME LINE L1 5769 5872 -298 644 218 61 87 chrX 20731525 20731697 -156242443 - MER58A DNA MER1_type -2197 223 57 2272 27 0 0 chrX 20731697 20731956 -156242184 + AluY SINE Alu 1 259 -52 644 218 61 87 chrX 20731956 20732012 -156242128 - MER58A DNA MER1_type -2363 57 1 794 234 94 15 chrX 20732491 20732692 -156241448 - AluJo SINE Alu -90 222 6 275 370 15 7 chrX 20734993 20735128 -156239012 + MER102b DNA MER1_type 196 331 -10 207 179 36 36 chrX 20735857 20735941 -156238199 + (TATAA)n Simple_repeat Simple_repeat 5 88 0 181 95 24 24 chrX 20735958 20736000 -156238140 + (TATAA)n Simple_repeat Simple_repeat 3 44 0 185 261 23 154 chrX 20736191 20736321 -156237819 - L2 LINE L2 -235 3037 2925 180 0 0 0 chrX 20736569 20736589 -156237551 + (TAA)n Simple_repeat Simple_repeat 1 20 0 2154 151 0 8 chrX 20736643 20737000 -156237140 + MER47A DNA MER2_type 2 355 -11 3218 58 0 7 chrX 20737000 20737415 -156236725 + L1PA7 LINE L1 5743 6154 0 186 43 0 0 chrX 20737530 20737553 -156236587 + (GA)n Simple_repeat Simple_repeat 1 23 0 336 265 69 57 chrX 20737758 20738003 -156236137 + L2 LINE L2 2294 2541 -773 33 43 0 0 chrX 20738855 20738902 -156235238 + AT_rich Low_complexity Low_complexity 1 47 0 622 129 5 5 chrX 20739434 20739619 -156234521 + AluSp SINE Alu 41 313 0 218 189 0 0 chrX 20739688 20739725 -156234415 - L2 LINE L2 -12 3301 3265 193 377 26 26 chrX 20739933 20740047 -156234093 - MIR SINE MIR -13 249 136 3470 129 24 44 chrX 20740070 20740205 -156233935 - L1MA8 LINE L1 -6 6285 6149 2059 119 0 7 chrX 20740205 20740507 -156233633 - AluSx SINE Alu -12 300 1 3470 129 24 44 chrX 20740507 20741051 -156233089 - L1MA8 LINE L1 -142 6149 5620 261 0 0 0 chrX 20741800 20741829 -156232311 + (A)n Simple_repeat Simple_repeat 1 29 0 1704 166 20 17 chrX 20742426 20742727 -156231413 - AluJo SINE Alu -8 304 3 29 0 0 0 chrX 20743219 20743248 -156230892 + AT_rich Low_complexity Low_complexity 1 29 0 2076 122 16 3 chrX 20743389 20743692 -156230448 - AluSx SINE Alu -1 311 5 1829 137 62 16 chrX 20744212 20744533 -156229607 + MER1B DNA MER1_type 1 336 -1 318 215 0 0 chrX 20745087 20745166 -156228974 + (TGGA)n Simple_repeat Simple_repeat 3 81 0 559 270 52 35 chrX 20745439 20745669 -156228471 - L1MC/D LINE L1 -2250 5558 5325 576 331 35 51 chrX 20746015 20746329 -156227811 + L2 LINE L2 3005 3313 0 262 288 0 14 chrX 20746429 20746502 -156227638 + GA-rich Low_complexity Low_complexity 3 74 0 275 363 0 34 chrX 20747936 20748082 -156226058 + L2 LINE L2 2944 3084 -188 1674 153 14 4 chrX 20748326 20748601 -156225539 + AluJb SINE Alu 3 280 -32 21 0 0 0 chrX 20748719 20748740 -156225400 + AT_rich Low_complexity Low_complexity 1 21 0 934 122 20 36 chrX 20749582 20749621 -156224519 - L1MA4 LINE L1 -12 6288 6250 1625 162 54 40 chrX 20749621 20749991 -156224149 - THE1C LTR MaLR 0 375 1 934 122 20 36 chrX 20749991 20750147 -156223993 - L1MA4 LINE L1 -50 6250 6096 23 33 0 0 chrX 20750574 20750604 -156223536 + AT_rich Low_complexity Low_complexity 1 30 0 530 160 47 47 chrX 20751566 20751716 -156222424 - MER96B DNA MER1_type? -44 373 224 693 289 0 21 chrX 20751919 20752106 -156222034 + MIR SINE MIR 2 184 -78 300 268 6 116 chrX 20752230 20752394 -156221746 - L1ME LINE L1 -348 5822 5677 800 329 55 7 chrX 20752891 20753201 -156220939 - LTR16C LTR ERVL 0 491 167 222 37 0 0 chrX 20753947 20753974 -156220166 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 764 230 92 29 chrX 20754260 20754499 -156219641 - L1ME3A LINE L1 -214 5956 5703 324 273 111 81 chrX 20754542 20754813 -156219327 + LTR33A LTR ERVL 5 283 -240 278 130 0 19 chrX 20754866 20754920 -156219220 + (TCC)n Simple_repeat Simple_repeat 2 54 0 * 291 140 0 0 chrX 20754911 20754961 -156219179 + (TC)n Simple_repeat Simple_repeat 2 51 0 325 316 74 16 chrX 20754965 20755155 -156218985 + LTR33A LTR ERVL 321 521 -2 527 303 52 9 chrX 20755156 20755387 -156218753 - L1ME3A LINE L1 -551 5611 5371 2077 101 0 44 chrX 20756234 20756550 -156217590 + AluSg SINE Alu 1 302 -8 207 0 0 0 chrX 20757801 20757824 -156216316 + (T)n Simple_repeat Simple_repeat 1 23 0 527 318 101 22 chrX 20760166 20760497 -156213643 + L2 LINE L2 2592 2954 -360 2440 136 44 7 chrX 20760497 20760910 -156213230 - MSTA LTR MaLR 0 428 1 527 318 101 22 chrX 20760910 20760936 -156213204 + L2 LINE L2 2954 2977 -337 201 152 0 0 chrX 20760968 20761001 -156213139 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 293 327 138 44 chrX 20761001 20761032 -156213108 - L2 LINE L2 0 3313 3286 927 258 5 14 chrX 20761032 20761253 -156212887 + MER20 DNA MER1_type 1 219 0 293 327 138 44 chrX 20761253 20761518 -156212622 - L2 LINE L2 -27 3286 2989 2311 90 3 7 chrX 20762099 20762400 -156211740 + AluSx SINE Alu 1 300 -12 436 256 74 2 chrX 20762636 20762788 -156211352 + L1ME3A LINE L1 5996 6164 -2 507 275 116 0 chrX 20762970 20763108 -156211032 - MIR SINE MIR -107 155 2 452 288 0 23 chrX 20763333 20763493 -156210647 + MER5B DNA MER1_type 36 178 0 2195 88 41 0 chrX 20763805 20764100 -156210040 - AluSx SINE Alu -5 307 1 432 37 0 0 chrX 20764775 20764829 -156209311 + (TG)n Simple_repeat Simple_repeat 1 54 0 30 45 0 0 chrX 20765827 20765871 -156208269 + AT_rich Low_complexity Low_complexity 1 44 0 1407 223 0 17 chrX 20766330 20766626 -156207514 + AluJo SINE Alu 1 291 -21 2492 71 0 3 chrX 20767271 20767581 -156206559 - AluSc SINE Alu 0 309 1 440 294 13 13 chrX 20767787 20767940 -156206200 - Charlie8 DNA MER1_type -2163 254 102 306 303 11 0 chrX 20767985 20768074 -156206066 + L2 LINE L2 3223 3312 -1 1157 181 75 97 chrX 20768213 20768627 -156205513 + MER66A LTR ERV1 97 478 0 297 253 21 21 chrX 20769590 20769685 -156204455 + CT-rich Low_complexity Low_complexity 4 98 0 288 0 0 0 chrX 20771098 20771130 -156203010 + (CA)n Simple_repeat Simple_repeat 2 33 0 1607 208 35 14 chrX 20771730 20772096 -156202044 + MLT1A2 LTR MaLR 1 374 0 1662 206 21 12 chrX 20772191 20772526 -156201614 + LTR32 LTR ERVL 7 344 -127 861 224 6 6 chrX 20772572 20772751 -156201389 + LTR32 LTR ERVL 293 471 0 234 350 60 8 chrX 20773543 20773660 -156200480 - MIR SINE MIR -94 168 46 2076 104 23 16 chrX 20774283 20774591 -156199549 + AluSq SINE Alu 1 310 -3 321 146 0 0 chrX 20774642 20774690 -156199450 - MER5B DNA MER1_type -126 52 5 217 250 138 12 chrX 20775299 20775379 -156198761 - MIR SINE MIR -108 154 65 684 166 183 33 chrX 20775822 20776063 -156198077 - Charlie5 DNA MER1_type 0 2624 2348 642 211 21 31 chrX 20776061 20776255 -156197885 - Charlie5 DNA MER1_type -2416 196 5 * 1171 181 127 70 chrX 20777084 20777510 -156196630 - LTR7 LTR ERV1 0 450 1 21 0 0 0 chrX 20778043 20778064 -156196076 + AT_rich Low_complexity Low_complexity 1 21 0 2464 156 46 4 chrX 20778099 20778599 -156195541 - L1MA8 LINE L1 -427 5864 5344 1587 57 13 35 chrX 20778608 20778836 -156195304 + L1PA8 LINE L1 5949 6171 -1 1153 158 85 88 chrX 20778906 20779199 -156194941 - L1MA8 LINE L1 -796 5350 5057 2263 101 7 0 chrX 20779199 20779497 -156194643 - AluSg SINE Alu 0 310 11 1153 158 85 88 chrX 20779497 20779601 -156194539 - L1MA8 LINE L1 -1089 5057 4954 2483 78 0 0 chrX 20779601 20779909 -156194231 - AluY SINE Alu -3 308 1 2440 55 0 0 chrX 20780283 20780573 -156193567 - AluY SINE Alu -21 290 1 26 0 0 0 chrX 20780626 20780652 -156193488 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chrX 20781125 20781147 -156192993 + (T)n Simple_repeat Simple_repeat 1 22 0 363 258 107 103 chrX 20782324 20782576 -156191564 + MIR SINE MIR 3 255 -7 2601 58 0 0 chrX 20783123 20783432 -156190708 - AluY SINE Alu -2 309 1 21 0 0 0 chrX 20783654 20783675 -156190465 + AT_rich Low_complexity Low_complexity 1 21 0 1273 264 193 15 chrX 20784541 20785214 -156188926 - LTR50 LTR ERVL 0 795 3 2323 99 3 0 chrX 20786008 20786312 -156187828 - AluSp SINE Alu -8 305 1 182 418 25 0 chrX 20786596 20786718 -156187422 - L2 LINE L2 -1 3271 3147 2131 133 0 0 chrX 20787939 20788247 -156185893 - AluSg SINE Alu -2 308 1 2345 57 3 13 chrX 20788583 20788881 -156185259 - AluY SINE Alu -16 295 1 517 330 56 28 chrX 20788943 20789326 -156184814 - LTR16A1 LTR ERVL 0 457 86 354 304 103 79 chrX 20790685 20791356 -156182784 - L2 LINE L2 -778 2536 1850 188 200 18 0 chrX 20791372 20791427 -156182713 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 1959 281 18 14 chrX 20791852 20792403 -156181737 - MLT1H1 LTR MaLR -2 553 1 325 288 75 0 chrX 20792896 20792976 -156181164 + MER5A DNA MER1_type 9 94 -95 367 322 48 14 chrX 20793330 20793476 -156180664 - MIR3 SINE MIR -4 204 54 269 274 0 16 chrX 20793526 20793588 -156180552 + MER5A DNA MER1_type 126 186 -3 304 277 160 29 chrX 20794056 20794294 -156179846 + L2 LINE L2 2631 2899 -415 185 314 0 0 chrX 20794685 20794736 -156179404 - L2 LINE L2 -2552 762 712 6255 135 56 49 chrX 20795917 20797256 -156176884 - L1P LINE L1 -896 5250 3903 3675 248 42 46 chrX 20797252 20799035 -156175105 - L1P3 LINE L1 -4687 1764 10 * 1989 124 0 7 chrX 20799941 20800223 -156173917 + AluSg SINE Alu 1 280 -30 25 31 0 0 chrX 20800502 20800534 -156173606 + AT_rich Low_complexity Low_complexity 1 32 0 1258 286 56 54 chrX 20800595 20801133 -156173007 - MLT1H LTR MaLR -8 541 3 180 324 134 22 chrX 20801384 20801563 -156172577 + L2 LINE L2 2810 3008 -264 425 216 72 9 chrX 20802627 20802738 -156171402 + MIR SINE MIR 32 149 -113 372 77 0 0 chrX 20803385 20803437 -156170703 + (TG)n Simple_repeat Simple_repeat 2 53 0 2070 131 24 0 chrX 20803449 20803740 -156170400 - AluSx SINE Alu -14 298 1 1992 101 35 10 chrX 20803937 20804225 -156169915 + AluSg SINE Alu 1 295 -15 610 280 125 21 chrX 20805120 20805488 -156168652 + LTR33 LTR ERVL 2 473 -48 274 268 28 0 chrX 20805587 20805658 -156168482 - MIR SINE MIR -14 248 176 512 276 100 18 chrX 20805796 20805966 -156168174 - MIR SINE MIR -64 198 15 680 259 38 9 chrX 20806126 20806338 -156167802 + L1ME3A LINE L1 5944 6161 -9 22 0 0 0 chrX 20807425 20807447 -156166693 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chrX 20807463 20807513 -156166627 + (TG)n Simple_repeat Simple_repeat 1 50 0 1966 132 0 0 chrX 20807516 20807789 -156166351 - AluSx SINE Alu -39 273 1 457 292 60 19 chrX 20807868 20808084 -156166056 - MIR SINE MIR -6 256 32 2178 115 0 0 chrX 20808349 20808636 -156165504 + AluSc SINE Alu 3 289 -20 5279 162 34 10 chrX 20809745 20809885 -156164255 - L1MA3 LINE L1 -9 7715 7580 2391 74 0 0 chrX 20809885 20810181 -156163959 - AluY SINE Alu -15 296 1 5279 162 34 10 chrX 20810181 20811595 -156162545 - L1MA3 LINE L1 -144 7580 6122 3357 187 56 1 chrX 20811590 20812337 -156161803 - L1MA3 LINE L1 -1932 5633 4846 * 3668 178 99 16 chrX 20812335 20813166 -156160974 - L1MA3 LINE L1 -3033 4532 3771 180 0 0 0 chrX 20813166 20813186 -156160954 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3668 178 99 16 chrX 20813186 20814034 -156160106 - L1MA3 LINE L1 -3794 3771 2701 7918 181 20 9 chrX 20814039 20815510 -156158630 - L1MA3 LINE L1 -6067 1498 13 187 353 134 8 chrX 20816039 20816158 -156157982 + L2 LINE L2 3139 3272 0 22 0 0 0 chrX 20816972 20816994 -156157146 + AT_rich Low_complexity Low_complexity 1 22 0 201 133 0 0 chrX 20817963 20817993 -156156147 + (CA)n Simple_repeat Simple_repeat 1 30 0 1719 154 14 4 chrX 20819941 20820220 -156153920 - AluSx SINE Alu 0 312 31 216 0 0 0 chrX 20820227 20820251 -156153889 + (T)n Simple_repeat Simple_repeat 1 24 0 278 281 185 45 chrX 20820685 20820863 -156153277 + MIR SINE MIR 52 254 -8 250 341 0 0 chrX 20820849 20820937 -156153203 - MIR SINE MIR -10 252 165 * 477 316 20 13 chrX 20821129 20821281 -156152859 - MIR SINE MIR -105 157 5 2376 96 0 6 chrX 20822497 20822850 -156151290 - AluSx SINE Alu 0 353 3 2144 96 7 3 chrX 20823868 20824160 -156149980 + AluSx SINE Alu 1 293 -19 1042 138 36 25 chrX 20824167 20824363 -156149777 + L1PA15 LINE L1 5775 5972 -193 727 246 78 30 chrX 20824364 20824553 -156149587 - LTR43 LTR ERV1 -190 412 205 183 42 0 0 chrX 20824553 20824577 -156149563 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 727 246 78 30 chrX 20824577 20824655 -156149485 - LTR43 LTR ERV1 -397 205 132 306 147 29 29 chrX 20824805 20824873 -156149267 - LTR60 LTR ERV1 -516 70 3 307 254 30 22 chrX 20824876 20825010 -156149130 + L1ME3A LINE L1 5025 5159 -987 * 677 319 93 19 chrX 20825008 20825710 -156148430 - L1M4 LINE L1 -866 5280 4527 1704 273 106 22 chrX 20825768 20826533 -156147607 + L1ME3A LINE L1 5335 6163 -7 1962 108 43 0 chrX 20826966 20827244 -156146896 + AluSc SINE Alu 1 290 -19 2714 81 30 0 chrX 20827953 20828322 -156145818 - L1PA7 LINE L1 -416 5738 5359 2916 70 30 2 chrX 20828322 20828712 -156145428 + L1PA7 LINE L1 5741 6150 -4 621 340 90 38 chrX 20829305 20829705 -156144435 - LTR33 LTR ERVL -13 508 88 1993 123 3 0 chrX 20830643 20830936 -156143204 + AluSx SINE Alu 1 294 -18 190 326 77 0 chrX 20832782 20832890 -156141250 + MIR SINE MIR 41 157 -65 189 74 0 0 chrX 20834524 20834551 -156139589 + (AAATG)n Simple_repeat Simple_repeat 3 29 0 460 30 15 15 chrX 20835258 20835325 -156138815 + (CA)n Simple_repeat Simple_repeat 1 67 0 651 317 116 29 chrX 20837338 20837900 -156136240 + L1MC/D LINE L1 3122 3732 -2414 253 342 65 18 chrX 20837960 20838296 -156135844 + L1MC/D LINE L1 5258 5609 -2199 549 225 0 0 chrX 20838297 20838448 -156135692 + (TA)n Simple_repeat Simple_repeat 1 151 0 198 0 0 0 chrX 20838501 20838523 -156135617 + (TG)n Simple_repeat Simple_repeat 2 23 0 3776 126 28 16 chrX 20838628 20839014 -156135126 + L1PA15 LINE L1 5534 5931 -234 2367 63 7 7 chrX 20839014 20839314 -156134826 + AluSp SINE Alu 1 300 -13 3776 126 28 16 chrX 20839314 20839545 -156134595 + L1PA15 LINE L1 5931 6158 -7 288 229 14 0 chrX 20839819 20839889 -156134251 + MER58A DNA MER1_type 46 116 0 265 130 19 0 chrX 20839942 20839996 -156134144 - L1MB4 LINE L1 0 6180 6126 * 4718 165 36 21 chrX 20839994 20840959 -156133181 - L1MA8 LINE L1 0 6291 5308 2607 171 33 6 chrX 20840964 20841483 -156132657 - L1MB4 LINE L1 -36 6144 5612 263 278 183 0 chrX 20841853 20841968 -156132172 + L2 LINE L2 3178 3313 0 206 118 0 0 chrX 20842049 20842083 -156132057 + (ATG)n Simple_repeat Simple_repeat 1 34 0 4177 208 20 21 chrX 20842103 20843003 -156131137 - L1MD2 LINE L1 -92 6267 5369 302 254 28 0 chrX 20844284 20844426 -156129714 + (TA)n Simple_repeat Simple_repeat 1 146 0 201 175 0 0 chrX 20844578 20844618 -156129522 + (TA)n Simple_repeat Simple_repeat 1 40 0 936 266 63 0 chrX 20845075 20845346 -156128794 - L1MB7 LINE L1 -77 6107 5820 2540 41 0 13 chrX 20845369 20845684 -156128456 - AluY SINE Alu 0 311 1 534 287 205 4 chrX 20846030 20846298 -156127842 - MER5C DNA MER1_type 0 324 3 2461 56 0 10 chrX 20846525 20846829 -156127311 - AluY SINE Alu -10 301 1 195 42 0 0 chrX 20847114 20847138 -156127002 + (T)n Simple_repeat Simple_repeat 1 24 0 959 304 58 37 chrX 20847888 20848322 -156125818 - LTR16A LTR ERVL -5 445 3 21 36 0 0 chrX 20849439 20849467 -156124673 + AT_rich Low_complexity Low_complexity 1 28 0 257 197 99 28 chrX 20849859 20849930 -156124210 - MIR SINE MIR -135 127 52 300 230 10 50 chrX 20851350 20851450 -156122690 - L1MC4 LINE L1 -1333 6709 6614 * 308 231 0 66 chrX 20851434 20851525 -156122615 + L1MC4 LINE L1 6648 6732 -1310 342 257 109 22 chrX 20853134 20853317 -156120823 - HAL1b LINE L1 -396 952 754 507 349 115 0 chrX 20853399 20853591 -156120549 - MIR SINE MIR 0 262 49 22 56 0 0 chrX 20853742 20853778 -156120362 + AT_rich Low_complexity Low_complexity 1 36 0 227 320 49 90 chrX 20853798 20853920 -156120220 - MIR3 SINE MIR -26 182 66 27 0 0 0 chrX 20854142 20854169 -156119971 + AT_rich Low_complexity Low_complexity 1 27 0 2017 121 0 0 chrX 20854347 20854636 -156119504 - AluSx SINE Alu -23 289 1 219 150 0 0 chrX 20854686 20854726 -156119414 + (T)n Simple_repeat Simple_repeat 1 40 0 580 212 85 146 chrX 20855407 20855648 -156118492 - L2 LINE L2 -13 3300 3087 1398 177 21 42 chrX 20855648 20855936 -156118204 - AluJo SINE Alu -30 282 1 580 212 85 146 chrX 20855936 20856057 -156118083 - L2 LINE L2 -226 3087 2960 1498 281 121 35 chrX 20856098 20856720 -156117420 - L2 LINE L2 -455 2859 2185 317 108 0 62 chrX 20856781 20856846 -156117294 - L1MA9 LINE L1 0 6312 6252 1419 165 0 125 chrX 20856855 20857183 -156116957 - AluJb SINE Alu -11 291 5 1280 165 0 17 chrX 20909458 20909688 -156064452 + AluJb SINE Alu 76 301 -11 900 209 0 68 chrX 20910998 20911233 -156062907 - MER20 DNA MER1_type 0 219 1 23 33 0 0 chrX 20912152 20912182 -156061958 + AT_rich Low_complexity Low_complexity 1 30 0 2154 123 0 3 chrX 20912286 20912594 -156061546 - AluSc SINE Alu 0 309 3 1849 199 40 86 chrX 20913160 20913683 -156060457 + MLT1D LTR MaLR 7 505 0 193 279 0 0 chrX 20913692 20913735 -156060405 + L2 LINE L2 3183 3225 -88 240 181 64 21 chrX 20914236 20914330 -156059810 + (TA)n Simple_repeat Simple_repeat 1 98 0 235 216 68 0 chrX 20914337 20914411 -156059729 + L1MC4 LINE L1 6625 6703 -1339 890 236 10 10 chrX 20914414 20914613 -156059527 + MLT1D LTR MaLR 307 505 0 21 0 0 0 chrX 20915941 20915962 -156058178 + AT_rich Low_complexity Low_complexity 1 21 0 227 161 0 36 chrX 20916402 20916458 -156057682 - L1ME LINE L1 -260 5861 5808 251 191 16 16 chrX 20916534 20916597 -156057543 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 27 29 0 0 chrX 20917045 20917079 -156057061 + AT_rich Low_complexity Low_complexity 1 34 0 2173 98 3 7 chrX 20917705 20918002 -156056138 + AluSq SINE Alu 1 296 -17 1705 198 27 0 chrX 20918167 20918501 -156055639 - MER2 DNA MER2_type -1 343 1 185 322 107 33 chrX 20919179 20919300 -156054840 - MIR SINE MIR -25 237 108 267 262 19 16 chrX 20919303 20919414 -156054726 - MIR SINE MIR -78 130 19 183 80 0 0 chrX 20919758 20919783 -156054357 + (TATATG)n Simple_repeat Simple_repeat 4 28 0 231 291 69 11 chrX 20919895 20920070 -156054070 + L1MEc LINE L1 1017 1201 -5195 5799 167 18 14 chrX 20920546 20920907 -156053233 - L1PB1 LINE L1 -1 6150 5792 216 67 0 0 chrX 20920907 20920937 -156053203 + (CA)n Simple_repeat Simple_repeat 2 31 0 5799 167 18 14 chrX 20920937 20922634 -156051506 - L1PB1 LINE L1 -359 5792 4093 203 305 0 0 chrX 20924173 20924232 -156049908 + GA-rich Low_complexity Low_complexity 3 61 0 528 248 43 7 chrX 20924519 20924660 -156049480 + MER33 DNA MER1_type 1 146 -178 397 150 110 20 chrX 20924693 20924793 -156049347 + MER33 DNA MER1_type 215 323 -1 2411 180 17 19 chrX 20925842 20926359 -156047781 - L1MA7 LINE L1 0 6291 5776 602 190 30 10 chrX 20926419 20926575 -156047565 - L1MC/D LINE L1 -545 5789 5693 * 1850 143 21 13 chrX 20926574 20927052 -156047088 + L1M2 LINE L1 5110 5591 -700 255 61 0 0 chrX 20927071 20927104 -156047036 + (TG)n Simple_repeat Simple_repeat 2 34 0 375 315 34 0 chrX 20927105 20927303 -156046837 + (TATG)n Simple_repeat Simple_repeat 1 204 0 256 264 22 22 chrX 20927311 20927402 -156046738 - L1MC4 LINE L1 -1338 6704 6614 47 19 0 0 chrX 20927649 20927703 -156046437 + AT_rich Low_complexity Low_complexity 1 54 0 328 369 131 24 chrX 20927965 20928602 -156045538 + L2 LINE L2 2552 3264 -8 1694 190 4 1 chrX 20928999 20929338 -156044802 - L1MB8 LINE L1 -173 6005 5667 441 0 0 0 chrX 20929843 20929892 -156044248 + (TA)n Simple_repeat Simple_repeat 2 50 0 225 0 0 0 chrX 20930550 20930575 -156043565 + (A)n Simple_repeat Simple_repeat 1 25 0 441 244 26 6 chrX 20932253 20932409 -156041731 + (TA)n Simple_repeat Simple_repeat 2 160 0 2208 107 13 3 chrX 20932473 20932783 -156041357 - AluSq SINE Alu 0 313 1 463 216 0 10 chrX 20932811 20932908 -156041232 - MER94 DNA DNA -34 100 5 835 199 74 61 chrX 20932917 20933214 -156040926 + MER33 DNA MER1_type 21 321 -3 5915 32 1 0 chrX 20933214 20933939 -156040201 + L1P LINE L1 4612 5337 -809 213 347 50 33 chrX 20935658 20935779 -156038361 + L2 LINE L2 2942 3064 -249 911 213 72 61 chrX 20935958 20936403 -156037737 + MLT1B LTR MaLR 1 390 0 265 160 20 0 chrX 20936706 20936756 -156037384 + L1PA14 LINE L1 5860 5910 -251 295 186 157 0 chrX 20937163 20937233 -156036907 + LTR33 LTR ERVL 9 89 -432 29 60 0 0 chrX 20938499 20938549 -156035591 + AT_rich Low_complexity Low_complexity 1 50 0 2202 71 4 0 chrX 20938800 20939081 -156035059 + AluY SINE Alu 1 282 -29 620 317 53 28 chrX 20941156 20941399 -156032741 + MIR SINE MIR 3 254 -8 634 171 0 0 chrX 20941626 20941737 -156032403 + FRAM SINE Alu 57 167 -9 23 33 0 0 chrX 20942442 20942472 -156031668 + AT_rich Low_complexity Low_complexity 1 30 0 25 90 0 0 chrX 20944686 20944753 -156029387 + AT_rich Low_complexity Low_complexity 1 67 0 205 255 20 0 chrX 20947008 20947059 -156027081 - L2 LINE L2 -10 3303 3252 746 207 9 68 chrX 20949599 20949821 -156024319 + MER3 DNA MER1_type 1 209 0 1260 198 0 30 chrX 20949861 20950129 -156024011 + AluJo SINE Alu 21 280 -32 2027 92 33 43 chrX 20950294 20950598 -156023542 - AluSg SINE Alu -9 301 1 1083 239 19 0 chrX 20950640 20950903 -156023237 + L1MC1 LINE L1 4706 4973 -1173 2264 101 0 10 chrX 20951083 20951391 -156022749 + AluSx SINE Alu 1 305 -7 931 150 140 10 chrX 20951447 20951647 -156022493 + L1PA16 LINE L1 5941 6166 0 5882 178 23 22 chrX 20951747 20953101 -156021039 + L1MC1 LINE L1 4981 6331 -2 403 125 28 14 chrX 20954351 20954423 -156019717 - MIR SINE MIR -84 178 106 280 348 36 22 chrX 20954561 20954699 -156019441 - MIR3 SINE MIR -65 143 4 330 289 72 102 chrX 20954898 20955203 -156018937 + L3 LINE CR1 944 1239 -338 353 291 71 8 chrX 20955249 20955376 -156018764 + MIR SINE MIR 57 191 -71 2439 70 0 0 chrX 20955551 20955851 -156018289 - AluY SINE Alu -11 300 1 736 289 50 15 chrX 20956311 20956571 -156017569 + L2 LINE L2 1870 2138 -1176 939 298 148 24 chrX 20956572 20957336 -156016804 + L2 LINE L2 2421 3292 -21 223 235 0 20 chrX 20957713 20957764 -156016376 + (TA)n Simple_repeat Simple_repeat 1 50 0 206 350 0 0 chrX 20957916 20957976 -156016164 + L2 LINE L2 1842 1901 -1413 2280 84 3 7 chrX 20957978 20958288 -156015852 + AluSc SINE Alu 1 309 0 662 357 157 28 chrX 20959377 20959422 -156014718 - L2 LINE L2 -517 2797 2759 2285 242 26 8 chrX 20959422 20960025 -156014115 - MER90 LTR ERV1 0 614 1 662 357 157 28 chrX 20960025 20960739 -156013401 - L2 LINE L2 -555 2759 1940 180 0 0 0 chrX 20960972 20960992 -156013148 + (A)n Simple_repeat Simple_repeat 1 20 0 2466 21 7 0 chrX 20961199 20961484 -156012656 + AluY SINE Alu 2 288 -23 375 266 288 14 chrX 20962449 20962588 -156011552 - MER5A DNA MER1_type -3 186 10 225 94 0 0 chrX 20964367 20964399 -156009741 + (CTATT)n Simple_repeat Simple_repeat 2 33 0 459 322 44 44 chrX 20965074 20965301 -156008839 - L3 LINE CR1 -38 1539 1313 545 278 78 32 chrX 20965349 20965706 -156008434 + MLT1H1 LTR MaLR 152 546 -9 234 0 0 0 chrX 20965736 20965762 -156008378 + (T)n Simple_repeat Simple_repeat 1 26 0 1110 162 18 49 chrX 20965825 20966111 -156008029 + L1MA8 LINE L1 5718 6005 -179 375 315 70 64 chrX 20966223 20966550 -156007590 - L3 LINE CR1 -474 1103 775 187 323 43 11 chrX 20966612 20966705 -156007435 - MIR SINE MIR -74 188 93 198 325 77 0 chrX 20966865 20966982 -156007158 - L3 LINE CR1 -820 757 632 1071 298 60 22 chrX 20967172 20967538 -156006602 + LTR16C LTR ERVL 112 491 0 271 385 53 15 chrX 20967637 20967902 -156006238 + L2 LINE L2 1333 1607 -1707 975 118 0 0 chrX 20967909 20968045 -156006095 - AluSc SINE Alu -18 291 156 1038 347 77 31 chrX 20968045 20968514 -156005626 + L2 LINE L2 1969 2415 -899 1713 192 40 0 chrX 20968514 20968863 -156005277 + MLT1A1 LTR MaLR 2 364 -1 1038 347 77 31 chrX 20968863 20969091 -156005049 + L2 LINE L2 2415 2631 -683 740 202 40 0 chrX 20969091 20969264 -156004876 - L1MA4 LINE L1 -4 6296 6117 1038 347 77 31 chrX 20969264 20969407 -156004733 + L2 LINE L2 2631 2849 -465 3702 147 58 7 chrX 20969878 20970551 -156003589 + MER39 LTR ERV1 1 707 0 2531 30 0 7 chrX 20970664 20970964 -156003176 - AluY SINE Alu -13 298 1 222 200 67 0 chrX 20971064 20971109 -156003031 - L2 LINE L2 -9 3263 3216 2202 114 0 0 chrX 20974757 20975055 -155999085 + AluSx SINE Alu 1 298 -14 2762 123 68 70 chrX 20975228 20975637 -155998503 + MER4B LTR ERV1 1 410 -200 2312 82 0 19 chrX 20975637 20975952 -155998188 - AluY SINE Alu 0 311 3 2762 123 68 70 chrX 20975952 20976103 -155998037 + MER4B LTR ERV1 410 560 -50 1009 110 34 0 chrX 20976109 20976255 -155997885 - AluSg/x SINE Alu -1 311 161 380 125 0 0 chrX 20976255 20976311 -155997829 + MER4A LTR ERV1 609 664 0 554 345 15 15 chrX 20979168 20979374 -155994766 + MIR SINE MIR 30 235 -27 968 262 0 0 chrX 20979614 20979820 -155994320 + MER58A DNA MER1_type 3 208 -16 1628 221 11 32 chrX 20980805 20980965 -155993175 - MLT1A2 LTR MaLR -2 372 210 1781 175 92 25 chrX 20980965 20981366 -155992774 + MSTA LTR MaLR 1 428 0 1628 221 11 32 chrX 20981366 20981581 -155992559 - MLT1A2 LTR MaLR -164 210 5 192 371 56 0 chrX 20981875 20981964 -155992176 - MIR SINE MIR -65 143 50 1021 268 70 68 chrX 20981978 20982489 -155991651 + LTR33A LTR ERVL 1 512 -11 213 345 84 92 chrX 20982517 20982705 -155991435 - L2 LINE L2 -7 3265 3077 2089 125 0 0 chrX 20982705 20983009 -155991131 + AluSc SINE Alu 1 304 -5 213 345 84 92 chrX 20983009 20983223 -155990917 - L2 LINE L2 -195 3077 2866 222 167 0 24 chrX 20983417 20983459 -155990681 - MER5C DNA MER1_type -248 76 36 557 349 135 25 chrX 20983562 20984416 -155989724 - L2 LINE L2 -565 2749 1802 2284 125 58 23 chrX 20984879 20985312 -155988828 + LTR7 LTR ERV1 1 448 -2 591 205 0 10 chrX 20985388 20985534 -155988606 + MER5A DNA MER1_type 4 189 0 601 237 69 0 chrX 20985552 20985725 -155988415 - MER5A DNA MER1_type -4 185 1 186 43 0 0 chrX 20985890 20985913 -155988227 + (T)n Simple_repeat Simple_repeat 1 23 0 210 171 98 0 chrX 20986057 20986098 -155988042 + MIR SINE MIR 95 139 -123 181 268 36 18 chrX 20987331 20987387 -155986753 - L2 LINE L2 0 3272 3216 183 162 0 0 chrX 20987973 20988010 -155986130 + (CACCAT)n Simple_repeat Simple_repeat 2 38 0 312 258 189 97 chrX 20988116 20988282 -155985858 - MIR SINE MIR -6 256 64 1634 143 0 4 chrX 20988282 20988548 -155985592 + L1PA15 LINE L1 5901 6165 0 312 258 189 97 chrX 20988548 20988598 -155985542 - MIR SINE MIR -198 64 20 2135 98 0 14 chrX 20988875 20989170 -155984970 + AluSg1 SINE Alu 1 291 -18 449 261 39 8 chrX 20989555 20989685 -155984455 + MER94 DNA DNA 1 134 0 251 345 26 26 chrX 20989792 20989908 -155984232 + MIR SINE MIR 147 262 0 1648 207 24 3 chrX 20990521 20990855 -155983285 - MER58B DNA MER1_type 0 341 1 205 161 0 0 chrX 20991567 20991598 -155982542 + polypurine Low_complexity Low_complexity 2 32 0 23 54 0 0 chrX 20992511 20992548 -155981592 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chrX 20993780 20993813 -155980327 + AT_rich Low_complexity Low_complexity 1 33 0 252 373 34 52 chrX 20994482 20994750 -155979390 - L3 LINE CR1 -124 1453 1191 200 359 67 26 chrX 20995666 20995861 -155978279 - L3 LINE CR1 -1034 543 341 331 315 30 80 chrX 20995885 20996055 -155978085 + MIR SINE MIR 13 173 -89 761 221 35 0 chrX 20996055 20996227 -155977913 + MER45A DNA AcHobo 1 178 0 331 315 30 80 chrX 20996227 20996256 -155977884 + MIR SINE MIR 173 202 -60 1521 151 74 0 chrX 20996697 20996955 -155977185 - MER7A DNA MER2_type -1 335 59 8786 219 19 11 chrX 20996956 20999114 -155975026 + L1PA15 LINE L1 2730 4904 -1242 5372 127 20 6 chrX 20999115 21000306 -155973834 + L1PA15 LINE L1 4953 6157 -8 482 217 0 0 chrX 21000307 21000390 -155973750 - MER7A DNA MER2_type -265 81 1 817 146 169 6 chrX 21000458 21000636 -155973504 + MSTA LTR MaLR 1 207 -221 607 235 48 6 chrX 21000640 21000806 -155973334 + L1P4 LINE L1 759 931 -6650 * 6764 167 42 8 chrX 21000803 21001530 -155972610 + L1P4 LINE L1 4363 5063 -2521 243 0 0 0 chrX 21001530 21001557 -155972583 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 1054 109 6 11 chrX 21001563 21001737 -155972403 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 6764 167 42 8 chrX 21001737 21002295 -155971845 + L1P4 LINE L1 5067 5700 -1884 3834 117 19 1 chrX 21002297 21003351 -155970789 + L1P4 LINE L1 6167 7243 -369 467 218 0 0 chrX 21003356 21003443 -155970697 + MSTA LTR MaLR 340 426 -2 301 171 57 34 chrX 21003786 21003874 -155970266 - MIR SINE MIR -44 218 129 242 162 40 14 chrX 21004627 21004709 -155969431 + (TTAA)n Simple_repeat Simple_repeat 1 84 0 2309 109 0 6 chrX 21005669 21005981 -155968159 - AluSx SINE Alu 0 312 3 22 35 0 0 chrX 21006119 21006148 -155967992 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 21006917 21006940 -155967200 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chrX 21007129 21007162 -155966978 + AT_rich Low_complexity Low_complexity 1 33 0 4762 106 25 0 chrX 21007181 21007873 -155966267 - L1PA10 LINE L1 -16 6152 5444 2907 207 16 65 chrX 21007890 21008741 -155965399 + L1PA12 LINE L1 2585 3394 -4190 2221 111 0 10 chrX 21009789 21010095 -155964045 + AluY SINE Alu 1 303 -8 1207 148 5 0 chrX 21010588 21010791 -155963349 - L1PA14 LINE L1 0 6161 5958 414 338 15 8 chrX 21010812 21010945 -155963195 + MER5A DNA MER1_type 55 188 -1 22 0 0 0 chrX 21011810 21011832 -155962308 + AT_rich Low_complexity Low_complexity 1 22 0 324 319 188 0 chrX 21011988 21012126 -155962014 + MIR3 SINE MIR 36 199 -9 223 279 148 16 chrX 21012836 21012958 -155961182 + L3 LINE CR1 1216 1353 -224 1988 134 7 3 chrX 21014129 21014427 -155959713 - AluSx SINE Alu -13 299 1 2025 118 3 0 chrX 21014966 21015253 -155958887 + AluSg SINE Alu 9 296 -14 905 216 22 0 chrX 21016156 21016341 -155957799 - MER5A DNA MER1_type 0 189 1 543 298 37 0 chrX 21017684 21017845 -155956295 + MLT1G1 LTR MaLR 3 169 -426 212 365 143 33 chrX 21018089 21018607 -155955533 + L2 LINE L2 1955 2529 -785 21 0 0 0 chrX 21019281 21019302 -155954838 + AT_rich Low_complexity Low_complexity 1 21 0 2417 157 17 20 chrX 21019452 21019859 -155954281 + MSTB LTR MaLR 1 406 -20 2136 117 0 3 chrX 21021630 21021928 -155952212 - AluSq SINE Alu -16 297 1 529 209 0 11 chrX 21022869 21022960 -155951180 - Tigger7 DNA MER2_type -1 2586 2497 2882 173 29 4 chrX 21022962 21023454 -155950686 - Tigger7 DNA MER2_type -214 519 16 270 0 0 0 chrX 21023454 21023484 -155950656 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 1592 193 17 64 chrX 21023715 21024124 -155950016 + MLT1B LTR MaLR 1 390 0 290 367 74 37 chrX 21024311 21024581 -155949559 - L3b LINE CR1 -8 1575 1296 439 195 78 39 chrX 21026097 21026225 -155947915 - MIR SINE MIR -124 138 6 429 306 35 46 chrX 21027116 21027289 -155946851 + MIR SINE MIR 41 211 -51 1971 135 3 0 chrX 21027558 21027854 -155946286 - AluSx SINE Alu -13 299 3 410 322 75 23 chrX 21028024 21028238 -155945902 - Charlie8 DNA MER1_type -2143 274 50 26 30 0 0 chrX 21028377 21028410 -155945730 + AT_rich Low_complexity Low_complexity 1 33 0 1339 295 72 46 chrX 21028440 21029443 -155944697 + L1ME3A LINE L1 3636 4611 -1535 2252 193 64 6 chrX 21029443 21029929 -155944211 + MER67D LTR ERV1 1 514 0 1339 295 72 46 chrX 21029929 21029944 -155944196 + L1ME3A LINE L1 4611 4624 -1522 2026 126 0 10 chrX 21029944 21030237 -155943903 + AluSq SINE Alu 1 290 -23 1339 295 72 46 chrX 21030237 21030426 -155943714 + L1ME3A LINE L1 4624 4902 -1244 1786 271 66 26 chrX 21030793 21031656 -155942484 + L1ME3A LINE L1 5258 6164 -6 1986 108 59 15 chrX 21031685 21032089 -155942051 + L1MA4A LINE L1 5749 6295 -8 2520 61 3 0 chrX 21032150 21032460 -155941680 + AluY SINE Alu 1 311 0 603 257 17 0 chrX 21032705 21032880 -155941260 - MER3 DNA MER1_type 0 2411 2234 419 243 0 18 chrX 21032890 21033001 -155941139 - MER3 DNA MER1_type -61 148 40 235 263 20 10 chrX 21033169 21033268 -155940872 + (TA)n Simple_repeat Simple_repeat 2 101 0 299 341 82 2 chrX 21033450 21033574 -155940566 + MIR SINE MIR 20 153 -55 23 33 0 0 chrX 21033603 21033633 -155940507 + AT_rich Low_complexity Low_complexity 1 30 0 442 313 44 19 chrX 21034360 21034520 -155939620 - L3 LINE CR1 -23 1554 1391 624 294 77 17 chrX 21034536 21034771 -155939369 - MIR SINE MIR 0 262 14 253 347 128 30 chrX 21035309 21035779 -155938361 - L2 LINE L2 -557 2757 2242 269 321 174 11 chrX 21035932 21036116 -155938024 - L3 LINE CR1 -436 1141 928 315 246 0 0 chrX 21036159 21036285 -155937855 + (TA)n Simple_repeat Simple_repeat 1 126 0 1935 197 20 101 chrX 21037087 21037656 -155936484 + MLT2B3 LTR ERVL 1 520 -34 228 67 0 0 chrX 21037656 21037686 -155936454 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 1935 197 20 101 chrX 21037686 21037719 -155936421 + MLT2B3 LTR ERVL 520 554 0 673 174 0 9 chrX 21037780 21037889 -155936251 - FLAM_C SINE Alu -35 108 1 8418 166 103 22 chrX 21038322 21039945 -155934195 + MER52A LTR ERV1 1 1755 0 227 320 27 13 chrX 21040352 21040427 -155933713 + L2 LINE L2 3229 3304 -9 22 56 0 0 chrX 21040505 21040541 -155933599 + AT_rich Low_complexity Low_complexity 1 36 0 471 305 224 30 chrX 21042860 21043267 -155930873 + L2 LINE L2 1564 2071 -1243 2146 126 0 7 chrX 21043267 21043577 -155930563 - AluSx SINE Alu -4 308 1 471 305 224 30 chrX 21043577 21043628 -155930512 + L2 LINE L2 2071 2111 -1203 526 313 212 14 chrX 21043628 21044138 -155930002 + L2 LINE L2 2707 3310 -3 203 161 0 0 chrX 21046450 21046481 -155927659 + (CATA)n Simple_repeat Simple_repeat 3 33 0 375 60 0 0 chrX 21047305 21047355 -155926785 + (CA)n Simple_repeat Simple_repeat 1 50 0 501 370 45 0 chrX 21048367 21048610 -155925530 + MIR SINE MIR 1 254 -8 195 306 57 16 chrX 21049615 21049739 -155924401 + MIR SINE MIR 26 154 -108 10831 197 28 45 chrX 21049750 21052300 -155921840 + L1MA5A LINE L1 2642 5236 -1061 191 61 30 0 chrX 21052300 21052333 -155921807 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 10831 197 28 45 chrX 21052333 21052633 -155921507 + L1MA5A LINE L1 5236 5540 -757 2815 117 36 11 chrX 21052633 21053102 -155921038 - L1MA2 LINE L1 -8 6296 5816 10831 197 28 45 chrX 21053102 21053755 -155920385 + L1MA5A LINE L1 5540 6025 -272 1994 185 3 3 chrX 21053506 21053868 -155920272 + L1PB4 LINE L1 5782 6143 -13 * 27 0 0 0 chrX 21054922 21054949 -155919191 + AT_rich Low_complexity Low_complexity 1 27 0 189 314 0 0 chrX 21055427 21055478 -155918662 - L2 LINE L2 -3 3269 3219 201 121 0 0 chrX 21056266 21056299 -155917841 + (GAATG)n Simple_repeat Simple_repeat 1 33 0 267 308 85 15 chrX 21056303 21056433 -155917707 - L3b LINE CR1 -66 1517 1379 22 0 0 0 chrX 21057924 21057946 -155916194 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 21058207 21058228 -155915912 + AT_rich Low_complexity Low_complexity 1 21 0 297 371 45 0 chrX 21058591 21058723 -155915417 - MIR3 SINE MIR -27 181 44 654 310 52 15 chrX 21058737 21059094 -155915046 - LTR16C LTR ERVL 0 491 84 1096 104 121 0 chrX 21059117 21059290 -155914850 - MER30 DNA MER1_type -36 194 1 629 167 218 6 chrX 21059834 21059990 -155914150 - MER53 DNA DNA 0 189 1 746 240 102 41 chrX 21060544 21060871 -155913269 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chrX 21060895 21060916 -155913224 + AT_rich Low_complexity Low_complexity 1 21 0 728 289 88 34 chrX 21061512 21061973 -155912167 + MLT1H LTR MaLR 1 537 -12 4125 195 83 50 chrX 21062436 21063641 -155910499 - L1MC2 LINE L1 -11 7754 6161 450 248 10 0 chrX 21063716 21063817 -155910323 + ERVL LTR ERVL 4928 5029 -735 2696 186 26 17 chrX 21064060 21064761 -155909379 + L1MA8 LINE L1 4750 5453 -743 4149 116 20 2 chrX 21064761 21065398 -155908742 + L1PA13 LINE L1 5508 6156 -7 315 188 25 25 chrX 21065440 21065520 -155908620 + L1MA8 LINE L1 5439 5518 -816 3578 169 38 20 chrX 21065563 21066321 -155907819 + L1MA8 LINE L1 5514 6285 -6 794 292 116 32 chrX 21066421 21066859 -155907281 - LTR33 LTR ERVL -18 503 29 196 344 78 47 chrX 21067659 21067787 -155906353 - L2 LINE L2 -4 3268 3137 784 154 0 22 chrX 21068219 21068355 -155905785 - FLAM_C SINE Alu 0 133 1 746 172 14 115 chrX 21068525 21068734 -155905406 + MER5A DNA MER1_type 2 189 0 231 212 0 197 chrX 21069370 21069502 -155904638 + MER102a DNA MER1_type 225 330 0 381 255 57 9 chrX 21069543 21069649 -155904491 - MER5A DNA MER1_type -69 120 10 1882 151 7 3 chrX 21070259 21070557 -155903583 - AluJo SINE Alu -13 299 1 588 238 152 0 chrX 21071264 21071428 -155902712 - MER5A DNA MER1_type 0 189 1 2159 117 3 0 chrX 21071622 21071921 -155902219 + AluSg SINE Alu 1 300 -10 655 226 38 52 chrX 21071946 21072158 -155901982 + MER3 DNA MER1_type 1 209 0 2082 121 13 7 chrX 21072919 21073224 -155900916 + AluSx SINE Alu 1 307 -5 1079 78 20 0 chrX 21073401 21073554 -155900586 + L1PA6 LINE L1 5999 6154 0 590 253 19 26 chrX 21073712 21073866 -155900274 + MER5B DNA MER1_type 26 178 0 21 0 0 0 chrX 21073874 21073895 -155900245 + GC_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chrX 21074168 21074203 -155899937 + AT_rich Low_complexity Low_complexity 1 35 0 306 293 153 7 chrX 21074236 21074386 -155899754 - MIR SINE MIR -89 173 2 21 0 0 0 chrX 21074451 21074472 -155899668 + AT_rich Low_complexity Low_complexity 1 21 0 2733 119 12 64 chrX 21074631 21075150 -155898990 - L1MA3 LINE L1 -1 6304 5813 10819 177 58 14 chrX 21075150 21078208 -155895932 - L1 LINE L1 -2899 4666 1470 2441 168 24 2 chrX 21078208 21078624 -155895516 - MSTA LTR MaLR 0 428 4 8483 174 38 24 chrX 21078633 21079794 -155894346 - MSTA-int LTR MaLR -7 1644 453 478 82 0 0 chrX 21079794 21079867 -155894273 + L1PA8 LINE L1 6096 6168 -4 8483 174 38 24 chrX 21079867 21080327 -155893813 - MSTA-int LTR MaLR -1198 453 1 2515 144 51 7 chrX 21080327 21080737 -155893403 - MSTA LTR MaLR 0 428 1 8472 177 25 3 chrX 21080739 21082165 -155891975 - L1 LINE L1 -6093 1472 16 2251 90 6 16 chrX 21083442 21083754 -155890386 + AluY SINE Alu 1 309 -2 341 206 0 0 chrX 21083995 21084058 -155890082 + L2 LINE L2 3251 3313 0 610 102 10 20 chrX 21084180 21084278 -155889862 - THE1C-int LTR MaLR -1483 97 1 2426 89 77 3 chrX 21084278 21084627 -155889513 - THE1C LTR MaLR 0 375 1 551 199 177 14 chrX 21085153 21085294 -155888846 - MER5A DNA MER1_type 0 189 26 650 198 0 24 chrX 21086648 21086774 -155887366 + FLAM_C SINE Alu 1 123 -20 52 50 0 0 chrX 21086774 21086854 -155887286 + AT_rich Low_complexity Low_complexity 1 80 0 580 324 121 41 chrX 21087422 21088108 -155886032 + L2 LINE L2 2562 3301 -12 284 102 20 0 chrX 21088119 21088168 -155885972 + (TA)n Simple_repeat Simple_repeat 2 51 0 488 138 0 0 chrX 21088208 21088288 -155885852 + MADE1 DNA Mariner 1 80 0 535 280 23 45 chrX 21091223 21091482 -155882658 - LTR16A1 LTR ERVL 0 457 232 2379 234 55 8 chrX 21093812 21094325 -155879815 + MER45B DNA AcHobo 3 539 -501 440 233 113 13 chrX 21094328 21094478 -155879662 + MIR SINE MIR 84 248 -14 331 262 134 12 chrX 21095101 21095273 -155878867 - MER112 DNA MER1_type -1 259 67 2322 64 3 22 chrX 21096003 21096314 -155877826 + AluY SINE Alu 1 305 -6 23 0 0 0 chrX 21096505 21096528 -155877612 + AT_rich Low_complexity Low_complexity 1 23 0 569 245 50 7 chrX 21096533 21096672 -155877468 + MIR SINE MIR 74 218 -44 518 309 118 5 chrX 21097577 21097797 -155876343 - MIR SINE MIR -8 254 10 21 0 0 0 chrX 21097847 21097868 -155876272 + AT_rich Low_complexity Low_complexity 1 21 0 2197 115 0 0 chrX 21097869 21098173 -155875967 - AluSq SINE Alu -9 304 1 719 116 0 0 chrX 21098410 21098522 -155875618 + L1MA1 LINE L1 6191 6302 0 23966 45 9 1 chrX 21098873 21102707 -155871433 - L1PA5 LINE L1 -7 6147 2314 569 275 121 41 chrX 21102747 21103085 -155871055 + MLT1J LTR MaLR 3 367 -144 215 242 15 15 chrX 21103667 21103733 -155870407 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 261 0 0 0 chrX 21103742 21103771 -155870369 + (TG)n Simple_repeat Simple_repeat 2 30 0 756 247 9 55 chrX 21105082 21105301 -155868839 - MER58A DNA MER1_type -15 209 1 980 238 134 18 chrX 21107176 21107630 -155866510 - Charlie7 DNA MER1_type -622 1990 1484 366 289 56 0 chrX 21107805 21107947 -155866193 - Charlie7 DNA MER1_type -2459 153 4 574 254 94 10 chrX 21108020 21108221 -155865919 - MIR SINE MIR -17 245 28 31 26 0 0 chrX 21108292 21108330 -155865810 + AT_rich Low_complexity Low_complexity 1 38 0 24 77 0 0 chrX 21110126 21110178 -155863962 + AT_rich Low_complexity Low_complexity 1 52 0 1767 297 131 31 chrX 21110315 21110969 -155863171 - L2 LINE L2 -9 3304 2717 2621 43 0 0 chrX 21110969 21111271 -155862869 - AluY SINE Alu -9 302 1 1767 297 131 31 chrX 21111271 21111746 -155862394 - L2 LINE L2 -596 2717 2003 206 333 0 0 chrX 21111813 21111867 -155862273 + L2 LINE L2 3215 3268 -4 323 294 48 27 chrX 21112051 21112197 -155861943 + MIR SINE MIR 113 261 -1 212 349 113 9 chrX 21112281 21112387 -155861753 - L2 LINE L2 -35 3237 3121 601 234 0 0 chrX 21112467 21112591 -155861549 + MER110 LTR ERV1 366 489 -2 252 282 90 0 chrX 21112611 21112689 -155861451 - L2 LINE L2 -602 2712 2628 1905 248 65 24 chrX 21112904 21113654 -155860486 - L1P3 LINE L1 -5298 1700 1 1986 124 0 7 chrX 21114550 21114832 -155859308 + AluSg SINE Alu 1 280 -30 25 31 0 0 chrX 21115111 21115143 -155858997 + AT_rich Low_complexity Low_complexity 1 32 0 1425 286 56 54 chrX 21115204 21115742 -155858398 - MLT1H LTR MaLR -8 541 3 425 216 72 9 chrX 21117236 21117347 -155856793 + MIR SINE MIR 32 149 -113 372 77 0 0 chrX 21117994 21118046 -155856094 + (TG)n Simple_repeat Simple_repeat 2 53 0 2051 131 24 0 chrX 21118058 21118349 -155855791 - AluSx SINE Alu -14 298 1 1981 101 35 10 chrX 21118546 21118834 -155855306 + AluSg SINE Alu 1 295 -15 664 280 125 21 chrX 21119729 21120097 -155854043 + LTR33 LTR ERVL 2 473 -48 278 268 28 0 chrX 21120196 21120267 -155853873 - MIR SINE MIR -14 248 176 509 276 100 18 chrX 21120405 21120575 -155853565 - MIR SINE MIR -64 198 15 746 264 37 9 chrX 21120731 21120947 -155853193 + L1ME3A LINE L1 5940 6161 -9 22 0 0 0 chrX 21122034 21122056 -155852084 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chrX 21122072 21122122 -155852018 + (TG)n Simple_repeat Simple_repeat 1 50 0 1957 132 0 0 chrX 21122125 21122398 -155851742 - AluSx SINE Alu -39 273 1 452 292 60 19 chrX 21122477 21122693 -155851447 - MIR SINE MIR -6 256 32 2166 115 0 0 chrX 21122958 21123245 -155850895 + AluSc SINE Alu 3 289 -20 5598 162 34 10 chrX 21124354 21124494 -155849646 - L1MA3 LINE L1 -9 7715 7580 2388 74 0 0 chrX 21124494 21124790 -155849350 - AluY SINE Alu -15 296 1 5598 162 34 10 chrX 21124790 21126204 -155847936 - L1MA3 LINE L1 -144 7580 6122 3575 187 56 1 chrX 21126199 21126946 -155847194 - L1MA3 LINE L1 -1932 5633 4846 * 3929 178 99 16 chrX 21126944 21127775 -155846365 - L1MA3 LINE L1 -3033 4532 3771 180 0 0 0 chrX 21127775 21127795 -155846345 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3929 178 99 16 chrX 21127795 21128643 -155845497 - L1MA3 LINE L1 -3794 3771 2701 8452 181 20 9 chrX 21128648 21130119 -155844021 - L1MA3 LINE L1 -6067 1498 13 188 353 134 8 chrX 21130648 21130767 -155843373 + L2 LINE L2 3139 3272 0 22 0 0 0 chrX 21131581 21131603 -155842537 + AT_rich Low_complexity Low_complexity 1 22 0 201 133 0 0 chrX 21132572 21132602 -155841538 + (CA)n Simple_repeat Simple_repeat 1 30 0 1690 144 15 4 chrX 21134565 21134829 -155839311 - AluSx SINE Alu -15 297 31 216 0 0 0 chrX 21134836 21134860 -155839280 + (T)n Simple_repeat Simple_repeat 1 24 0 277 281 185 45 chrX 21135294 21135472 -155838668 + MIR SINE MIR 52 254 -8 251 341 0 0 chrX 21135458 21135546 -155838594 - MIR SINE MIR -10 252 165 * 477 316 20 13 chrX 21135738 21135890 -155838250 - MIR SINE MIR -105 157 5 2357 96 0 6 chrX 21137106 21137459 -155836681 - AluSx SINE Alu 0 353 3 2137 96 7 3 chrX 21138477 21138769 -155835371 + AluSx SINE Alu 1 293 -19 1105 138 36 25 chrX 21138776 21138972 -155835168 + L1PA15 LINE L1 5775 5972 -193 735 246 78 30 chrX 21138973 21139162 -155834978 - LTR43 LTR ERV1 -190 412 205 183 42 0 0 chrX 21139162 21139186 -155834954 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 735 246 78 30 chrX 21139186 21139264 -155834876 - LTR43 LTR ERV1 -397 205 132 311 147 29 29 chrX 21139414 21139482 -155834658 - LTR60 LTR ERV1 -516 70 3 301 250 30 23 chrX 21139485 21139617 -155834523 + L1ME3A LINE L1 5025 5157 -989 611 319 93 19 chrX 21139617 21140319 -155833821 - L1M4 LINE L1 -866 5280 4527 1656 273 106 22 chrX 21140377 21141142 -155832998 + L1ME3A LINE L1 5335 6163 -7 1992 108 43 0 chrX 21141575 21141853 -155832287 + AluSc SINE Alu 1 290 -19 2710 81 30 0 chrX 21142562 21142931 -155831209 - L1PA7 LINE L1 -416 5738 5359 2934 70 30 2 chrX 21142931 21143321 -155830819 + L1PA7 LINE L1 5741 6150 -4 619 340 90 38 chrX 21143914 21144314 -155829826 - LTR33 LTR ERVL -13 508 88 2027 123 3 0 chrX 21145252 21145545 -155828595 + AluSx SINE Alu 1 294 -18 186 326 77 0 chrX 21147391 21147499 -155826641 + MIR SINE MIR 41 157 -65 189 74 0 0 chrX 21149133 21149160 -155824980 + (AAATG)n Simple_repeat Simple_repeat 3 29 0 460 30 15 15 chrX 21149867 21149934 -155824206 + (CA)n Simple_repeat Simple_repeat 1 67 0 644 322 108 21 chrX 21151947 21152509 -155821631 + L1 LINE L1 3122 3732 -2414 290 167 31 52 chrX 21152569 21152665 -155821475 + L1M LINE L1 5258 5351 -2457 612 224 0 0 chrX 21152892 21153057 -155821083 + (TA)n Simple_repeat Simple_repeat 1 165 0 198 0 0 0 chrX 21153110 21153132 -155821008 + (TG)n Simple_repeat Simple_repeat 2 23 0 3784 126 28 16 chrX 21153237 21153623 -155820517 + L1PA15 LINE L1 5534 5931 -234 2404 63 7 7 chrX 21153623 21153923 -155820217 + AluSp SINE Alu 1 300 -13 3784 126 28 16 chrX 21153923 21154154 -155819986 + L1PA15 LINE L1 5931 6158 -7 282 229 14 0 chrX 21154428 21154498 -155819642 + MER58A DNA MER1_type 46 116 0 258 130 19 0 chrX 21154551 21154605 -155819535 - L1MB4 LINE L1 0 6180 6126 * 4664 165 36 21 chrX 21154603 21155568 -155818572 - L1MA8 LINE L1 0 6291 5308 2582 171 33 6 chrX 21155573 21156092 -155818048 - L1MB4 LINE L1 -36 6144 5612 259 278 183 0 chrX 21156462 21156577 -155817563 + L2 LINE L2 3178 3313 0 4143 208 20 21 chrX 21156700 21157600 -155816540 - L1MD2 LINE L1 -92 6267 5369 302 254 28 0 chrX 21158881 21159023 -155815117 + (TA)n Simple_repeat Simple_repeat 1 146 0 201 175 0 0 chrX 21159175 21159215 -155814925 + (TA)n Simple_repeat Simple_repeat 1 40 0 927 266 63 0 chrX 21159672 21159943 -155814197 - L1MB7 LINE L1 -77 6107 5820 2580 41 0 13 chrX 21159966 21160281 -155813859 - AluY SINE Alu 0 311 1 525 287 205 4 chrX 21160627 21160895 -155813245 - MER5C DNA MER1_type 0 324 3 2499 56 0 10 chrX 21161122 21161426 -155812714 - AluY SINE Alu -10 301 1 195 42 0 0 chrX 21161711 21161735 -155812405 + (T)n Simple_repeat Simple_repeat 1 24 0 978 302 58 37 chrX 21162485 21162919 -155811221 - LTR16A LTR ERVL -5 445 3 21 36 0 0 chrX 21164036 21164064 -155810076 + AT_rich Low_complexity Low_complexity 1 28 0 256 197 99 28 chrX 21164456 21164527 -155809613 - MIR SINE MIR -135 127 52 305 231 0 66 chrX 21166031 21166122 -155808018 + L1MC4 LINE L1 6648 6732 -1310 329 257 109 22 chrX 21167731 21167914 -155806226 - HAL1b LINE L1 -396 952 754 497 349 115 0 chrX 21167996 21168188 -155805952 - MIR SINE MIR 0 262 49 22 56 0 0 chrX 21168339 21168375 -155805765 + AT_rich Low_complexity Low_complexity 1 36 0 226 320 49 90 chrX 21168395 21168517 -155805623 - MIR3 SINE MIR -26 182 66 27 0 0 0 chrX 21168739 21168766 -155805374 + AT_rich Low_complexity Low_complexity 1 27 0 2055 121 0 0 chrX 21168944 21169233 -155804907 - AluSx SINE Alu -23 289 1 219 150 0 0 chrX 21169283 21169323 -155804817 + (T)n Simple_repeat Simple_repeat 1 40 0 573 212 85 146 chrX 21170004 21170245 -155803895 - L2 LINE L2 -13 3300 3087 1429 177 21 42 chrX 21170245 21170533 -155803607 - AluJo SINE Alu -30 282 1 573 212 85 146 chrX 21170533 21170654 -155803486 - L2 LINE L2 -226 3087 2960 1497 281 121 35 chrX 21170695 21171317 -155802823 - L2 LINE L2 -455 2859 2185 312 108 0 62 chrX 21171378 21171443 -155802697 - L1MA9 LINE L1 0 6312 6252 1446 165 0 125 chrX 21171452 21171780 -155802360 - AluJb SINE Alu -11 291 5 15825 114 21 36 chrX 21174235 21177489 -155796651 - L1P3 LINE L1 -2760 3701 424 18478 100 57 2 chrX 21177491 21181021 -155793119 + L1PA7 LINE L1 2515 6149 -5 25 0 0 0 chrX 21182724 21182749 -155791391 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chrX 21182937 21182972 -155791168 + AT_rich Low_complexity Low_complexity 1 35 0 782 178 6 58 chrX 21184297 21184471 -155789669 + FRAM SINE Alu 1 165 -11 11779 215 59 18 chrX 21184832 21186964 -155787176 - L1MA4A LINE L1 -1 7004 4961 2284 106 0 6 chrX 21186964 21187276 -155786864 - AluY SINE Alu -1 310 1 11779 215 59 18 chrX 21187276 21189978 -155784162 - L1MA4A LINE L1 -2044 4961 1960 7352 241 20 5 chrX 21189974 21191490 -155782650 - L1MA4A LINE L1 -5306 1543 5 * 22 70 0 0 chrX 21191570 21191613 -155782527 + AT_rich Low_complexity Low_complexity 1 43 0 498 306 88 21 chrX 21191813 21192006 -155782134 - MIR SINE MIR -37 225 20 207 313 116 27 chrX 21192014 21192161 -155781979 - MER5B DNA MER1_type -17 161 2 180 336 161 22 chrX 21193475 21193612 -155780528 + MIR SINE MIR 36 191 -71 1426 133 105 59 chrX 21193787 21194111 -155780029 + MER44D DNA MER2_type 1 609 0 321 26 0 0 chrX 21194298 21194336 -155779804 + (TC)n Simple_repeat Simple_repeat 1 38 0 315 0 0 0 chrX 21194335 21194370 -155779770 + (CA)n Simple_repeat Simple_repeat 1 35 0 * 412 259 187 6 chrX 21194644 21194810 -155779330 - MIR SINE MIR -11 251 56 324 0 0 0 chrX 21195461 21195497 -155778643 + (CA)n Simple_repeat Simple_repeat 2 37 0 1045 171 37 0 chrX 21197759 21197946 -155776194 + MER2 DNA MER2_type 6 199 -146 707 184 7 7 chrX 21197946 21198093 -155776047 - L1PA15 LINE L1 -2 6163 6017 662 199 0 30 chrX 21198211 21198572 -155775568 + (TA)n Simple_repeat Simple_repeat 1 350 0 245 256 12 0 chrX 21198558 21198640 -155775500 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 * 954 144 103 5 chrX 21198692 21198886 -155775254 - L1MA1 LINE L1 -10 6292 6080 300 232 0 0 chrX 21198886 21198942 -155775198 + MER2 DNA MER2_type 290 345 0 201 349 27 41 chrX 21198964 21199110 -155775030 + L2 LINE L2 2556 2699 -615 233 240 0 0 chrX 21199117 21199167 -155774973 + L2 LINE L2 2928 2977 -336 186 289 87 58 chrX 21200376 21200440 -155773700 + L2 LINE L2 3157 3227 -45 2152 40 0 90 chrX 21200440 21200741 -155773399 - AluY SINE Alu -4 307 34 186 289 87 58 chrX 21200741 21200780 -155773360 + L2 LINE L2 3227 3263 -9 22 0 0 0 chrX 21201645 21201667 -155772473 + AT_rich Low_complexity Low_complexity 1 22 0 1123 20 41 14 chrX 21201706 21201852 -155772288 - L1PA4 LINE L1 0 6155 6006 243 0 0 0 chrX 21201856 21201883 -155772257 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 1472 12 0 6 chrX 21201891 21202063 -155772077 + L1PA5 LINE L1 5803 5973 -181 1335 256 49 28 chrX 21202638 21203131 -155771009 + MLT1D LTR MaLR 3 505 0 21 0 0 0 chrX 21203319 21203340 -155770800 + AT_rich Low_complexity Low_complexity 1 21 0 1622 161 75 33 chrX 21204836 21205196 -155768944 + THE1C LTR MaLR 1 375 0 9362 130 20 39 chrX 21205198 21206806 -155767334 + THE1C-int LTR MaLR 3 1580 0 1463 112 123 73 chrX 21206806 21207163 -155766977 + THE1C LTR MaLR 1 375 0 22 56 0 0 chrX 21207363 21207399 -155766741 + AT_rich Low_complexity Low_complexity 1 36 0 2001 139 60 58 chrX 21207865 21208298 -155765842 + L1MA4 LINE L1 5851 6284 -16 430 289 19 0 chrX 21208436 21208592 -155765548 - MER110 LTR ERV1 -26 465 307 539 269 30 0 chrX 21208968 21209102 -155765038 + MIR SINE MIR 17 154 -108 198 0 0 0 chrX 21210058 21210080 -155764060 + (TG)n Simple_repeat Simple_repeat 2 23 0 916 306 45 38 chrX 21210519 21210918 -155763222 + L2 LINE L2 2910 3311 -2 277 224 51 10 chrX 21211988 21212086 -155762054 - MLT1J1 LTR MaLR 0 446 345 1869 154 80 9 chrX 21212108 21212445 -155761695 + THE1B LTR MaLR 1 361 -3 206 305 69 30 chrX 21213848 21213979 -155760161 - MIR SINE MIR -61 201 66 898 153 77 5 chrX 21214671 21214880 -155759260 - L1MA7 LINE L1 0 6291 6068 3818 219 52 33 chrX 21214946 21216005 -155758135 + L1MB3 LINE L1 4211 5318 -865 2636 136 36 0 chrX 21216005 21216418 -155757722 - MSTA LTR MaLR 0 428 1 3818 219 52 33 chrX 21216418 21217298 -155756842 + L1MB3 LINE L1 5318 6180 -3 585 321 55 37 chrX 21218714 21219254 -155754886 + L2 LINE L2 2687 3313 0 2128 136 0 3 chrX 21219405 21219715 -155754425 - AluY SINE Alu -2 309 1 292 291 209 0 chrX 21220972 21221082 -155753058 - L2 LINE L2 -4 3268 3136 22 0 0 0 chrX 21221718 21221740 -155752400 + GC_rich Low_complexity Low_complexity 1 22 0 342 242 30 10 chrX 21222803 21222902 -155751238 - MIR SINE MIR 0 262 162 199 219 97 79 chrX 21223166 21223280 -155750860 + MIR3 SINE MIR 5 120 -88 361 320 57 49 chrX 21223353 21223600 -155750540 - LTR16C LTR ERVL -1 490 242 195 42 0 0 chrX 21223612 21223636 -155750504 + (TCC)n Simple_repeat Simple_repeat 3 26 0 2372 118 19 16 chrX 21223779 21224142 -155749998 - THE1B LTR MaLR 0 364 1 949 194 84 28 chrX 21224273 21224536 -155749604 + L1MA8 LINE L1 6024 6296 -4 761 225 29 100 chrX 21227192 21227472 -155746668 + MIR SINE MIR 2 261 -1 412 312 100 0 chrX 21227490 21227660 -155746480 + L3 LINE CR1 627 813 -764 206 364 101 0 chrX 21227885 21228014 -155746126 + L3 LINE CR1 1002 1143 -434 215 291 18 0 chrX 21228179 21228234 -155745906 - L2 LINE L2 -8 3305 3250 2054 134 57 17 chrX 21228555 21228905 -155745235 - THE1B LTR MaLR 0 364 1 10747 119 10 1 chrX 21228905 21230470 -155743670 - THE1B-int LTR MaLR 0 1580 1 2070 148 51 14 chrX 21230470 21230821 -155743319 - THE1B LTR MaLR 0 364 1 1282 152 29 10 chrX 21230821 21231025 -155743115 - LTR28 LTR ERV1 -812 208 1 206 351 13 13 chrX 21231474 21231551 -155742589 - L2 LINE L2 -10 3262 3186 209 327 221 0 chrX 21233060 21233173 -155740967 + MIR SINE MIR 12 149 -113 2170 118 0 10 chrX 21233209 21233523 -155740617 - AluSx SINE Alu -1 311 1 1374 171 57 50 chrX 21233807 21234088 -155740052 + AluJo SINE Alu 3 285 -27 359 289 47 23 chrX 21234119 21234247 -155739893 - MER5A DNA MER1_type -50 139 9 821 177 25 91 chrX 21234390 21234453 -155739687 - MER5A DNA MER1_type -1 188 122 2931 155 26 12 chrX 21234453 21235020 -155739120 + L1MA5 LINE L1 5726 6300 0 821 177 25 91 chrX 21235020 21235154 -155738986 - MER5A DNA MER1_type -67 122 4 258 404 112 5 chrX 21236767 21237161 -155736979 - L2 LINE L2 -683 2631 2196 257 326 70 41 chrX 21237204 21237446 -155736694 - L2 LINE L2 -1265 2049 1801 186 333 61 30 chrX 21237538 21237637 -155736503 + L2 LINE L2 3156 3257 -15 1234 293 65 29 chrX 21238177 21238593 -155735547 - LTR16C LTR ERVL -56 435 5 871 181 7 0 chrX 21238599 21238754 -155735386 + MIR SINE MIR 50 205 -57 194 337 0 41 chrX 21238756 21238854 -155735286 - MIR SINE MIR -121 141 48 559 86 0 12 chrX 21239585 21239666 -155734474 + MADE1 DNA Mariner 1 80 0 568 135 21 0 chrX 21239748 21239844 -155734296 - L1MB8 LINE L1 -6 6172 6075 294 395 68 9 chrX 21240618 21240838 -155733302 + MIR SINE MIR 1 233 -29 21 95 0 0 chrX 21240957 21241020 -155733120 + AT_rich Low_complexity Low_complexity 1 63 0 734 301 68 10 chrX 21241248 21241633 -155732507 - MLT1I LTR MaLR -2 407 1 879 219 11 0 chrX 21241647 21241830 -155732310 - MER5A DNA MER1_type -4 185 1 804 299 25 0 chrX 21242333 21242534 -155731606 + MIR SINE MIR 23 228 -34 355 267 108 65 chrX 21243023 21243255 -155730885 - MIR SINE MIR -3 259 18 23 54 0 0 chrX 21244553 21244590 -155729550 + AT_rich Low_complexity Low_complexity 1 37 0 42214 41 21 1 chrX 21244654 21250685 -155723455 - L1PA3 LINE L1 0 6155 2 1308 210 7 55 chrX 21251223 21251533 -155722607 - AluJo SINE Alu -17 295 1 1314 158 8 13 chrX 21252268 21252502 -155721638 - MER46A DNA MER2_type -3 233 1 368 404 7 7 chrX 21252510 21252661 -155721479 + L2 LINE L2 3122 3272 0 231 232 0 0 chrX 21253807 21253863 -155720277 + (TA)n Simple_repeat Simple_repeat 2 57 0 294 197 47 39 chrX 21254771 21254885 -155719255 + L1MA6 LINE L1 6181 6300 0 360 384 94 14 chrX 21254912 21255399 -155718741 - L3 LINE CR1 -707 870 345 1521 136 50 50 chrX 21255587 21255926 -155718214 - L1MA2 LINE L1 0 6304 5966 1198 182 36 0 chrX 21255926 21256173 -155717967 - L1 LINE L1 -3640 2506 2251 1278 170 31 0 chrX 21257585 21257808 -155716332 - MER30 DNA MER1_type 0 230 1 933 238 46 4 chrX 21257808 21258069 -155716071 - L1MA9 LINE L1 -47 6265 5994 * 3641 218 57 16 chrX 21258053 21259044 -155715096 + L1MA9 LINE L1 3539 4569 -1577 1128 176 9 14 chrX 21259053 21259263 -155714877 + MER2 DNA MER2_type 2 210 -135 3158 226 76 9 chrX 21259363 21260496 -155713644 + L1MA9 LINE L1 4576 5833 -479 189 0 0 0 chrX 21260496 21260517 -155713623 + (CA)n Simple_repeat Simple_repeat 2 22 0 3158 226 76 9 chrX 21260517 21260780 -155713360 + L1MA9 LINE L1 5833 6077 -235 403 210 34 8 chrX 21260787 21260906 -155713234 - L1MA7 LINE L1 -5 6286 6165 29 47 0 0 chrX 21261540 21261583 -155712557 + AT_rich Low_complexity Low_complexity 1 43 0 206 219 0 0 chrX 21261585 21261626 -155712514 + (TATG)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chrX 21262833 21262855 -155711285 + AT_rich Low_complexity Low_complexity 1 22 0 1914 153 153 5 chrX 21263040 21263412 -155710728 - MSTA LTR MaLR 0 428 2 8620 183 31 9 chrX 21263413 21265028 -155709112 - MSTA-int LTR MaLR 0 1651 1 1971 128 147 26 chrX 21265028 21265410 -155708730 - MSTA LTR MaLR 0 428 1 275 301 75 34 chrX 21265435 21265581 -155708559 + L1M4 LINE L1 4077 4228 -1918 682 165 0 114 chrX 21265655 21265774 -155708366 - L1MA9 LINE L1 -371 5941 5810 1768 119 46 56 chrX 21265774 21266077 -155708063 - AluSx SINE Alu -10 302 3 682 165 0 114 chrX 21266077 21266088 -155708052 - L1MA9 LINE L1 -502 5810 5799 2094 120 20 0 chrX 21266088 21266387 -155707753 - AluSc SINE Alu -4 305 1 682 165 0 114 chrX 21266387 21266431 -155707709 - L1MA9 LINE L1 -513 5799 5786 785 222 54 51 chrX 21266440 21266755 -155707385 + L1MA9 LINE L1 5959 6274 -38 2545 157 36 0 chrX 21266959 21267398 -155706742 + L1PB4 LINE L1 5688 6142 -14 2061 171 3 11 chrX 21267428 21267796 -155706344 + MER47A DNA MER2_type 2 366 0 381 340 46 34 chrX 21268074 21268312 -155705828 - LTR33 LTR ERVL -239 282 42 324 375 55 10 chrX 21269056 21269256 -155704884 + L1MC/D LINE L1 5513 5721 -2087 385 327 0 109 chrX 21269279 21269444 -155704696 + L2 LINE L2 3126 3272 0 386 355 157 0 chrX 21269528 21269700 -155704440 - MIR SINE MIR -13 249 51 203 324 0 14 chrX 21269762 21269836 -155704304 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 * 267 232 0 0 chrX 21269781 21269837 -155704303 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 203 278 153 0 chrX 21271240 21271312 -155702828 - MIR SINE MIR -133 129 47 189 167 0 0 chrX 21271343 21271373 -155702767 + MIR SINE MIR 67 96 -166 438 348 191 20 chrX 21271653 21272050 -155702090 - L2 LINE L2 0 3313 2849 238 245 0 0 chrX 21272938 21272987 -155701153 + L2 LINE L2 3265 3313 0 343 313 60 8 chrX 21273114 21273248 -155700892 - MIR SINE MIR -102 160 20 258 324 86 50 chrX 21274302 21274441 -155699699 + L2 LINE L2 3121 3264 -8 2176 95 0 3 chrX 21274492 21274775 -155699365 - AluSx SINE Alu -30 282 1 1072 133 0 61 chrX 21274988 21275184 -155698956 - AluSx SINE Alu 0 312 129 4709 30 0 14 chrX 21275187 21275760 -155698380 - L1PA5 LINE L1 0 6154 5590 1327 19 0 0 chrX 21275760 21275917 -155698223 + L1P2 LINE L1 5360 5516 -639 884 148 0 0 chrX 21275917 21276052 -155698088 - AluSx SINE Alu -177 135 1 548 250 184 0 chrX 21280386 21280538 -155693602 + MER5A DNA MER1_type 10 189 0 2534 149 42 0 chrX 21280895 21281352 -155692788 - L1MA8 LINE L1 -11 6280 5805 231 245 32 32 chrX 21282517 21282611 -155691529 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 23 0 0 0 chrX 21285808 21285831 -155688309 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chrX 21286127 21286152 -155687988 + AT_rich Low_complexity Low_complexity 1 25 0 203 279 49 49 chrX 21286314 21286375 -155687765 - MIR SINE MIR -180 82 22 209 313 0 16 chrX 21286478 21286542 -155687598 - L2 LINE L2 -24 3289 3227 2187 114 7 0 chrX 21286629 21286936 -155687204 + AluSq SINE Alu 1 309 -4 1412 281 145 9 chrX 21287052 21287576 -155686564 - L2 LINE L2 -808 2506 1912 1798 161 3 0 chrX 21287844 21288129 -155686011 + AluSx SINE Alu 1 286 -26 1209 222 31 6 chrX 21288215 21288516 -155685624 - MLT1D LTR MaLR 0 505 214 473 286 60 6 chrX 21288544 21288712 -155685428 + MIR SINE MIR 68 244 -18 4583 177 29 9 chrX 21289411 21290300 -155683840 - L1MB1 LINE L1 -2 6166 5260 6683 206 75 22 chrX 21290510 21292318 -155681822 - L1MB1 LINE L1 -904 5242 3338 267 229 43 14 chrX 21292872 21292942 -155681198 + MIR SINE MIR 77 148 -114 28 48 0 0 chrX 21293583 21293625 -155680515 + AT_rich Low_complexity Low_complexity 1 42 0 950 259 191 29 chrX 21293764 21294268 -155679872 - MLT1G1 LTR MaLR -4 591 1 295 337 79 0 chrX 21294584 21294685 -155679455 - MIR SINE MIR -60 148 40 22 0 0 0 chrX 21294844 21294866 -155679274 + AT_rich Low_complexity Low_complexity 1 22 0 2137 112 3 6 chrX 21294996 21295308 -155678832 - AluSq SINE Alu -2 311 1 357 312 61 46 chrX 21296641 21297064 -155677076 + L1MC/D LINE L1 5167 5597 -755 202 274 20 0 chrX 21297310 21297361 -155676779 + (TG)n Simple_repeat Simple_repeat 2 53 0 489 34 0 0 chrX 21297528 21297587 -155676553 + (TG)n Simple_repeat Simple_repeat 2 60 0 4696 35 11 0 chrX 21297785 21298353 -155675787 - L1PA4 LINE L1 -2 6153 5580 660 358 41 13 chrX 21298578 21298894 -155675246 - MLT1I LTR MaLR -84 325 1 272 283 94 19 chrX 21299093 21299199 -155674941 + L3 LINE CR1 1392 1505 -72 713 297 146 12 chrX 21299444 21299865 -155674275 + L2 LINE L2 2732 3221 -92 237 83 0 0 chrX 21300755 21300791 -155673349 + (TG)n Simple_repeat Simple_repeat 1 36 0 2392 81 3 0 chrX 21301372 21301681 -155672459 + AluSg SINE Alu 1 310 0 238 188 60 68 chrX 21302221 21302338 -155671802 - L1 LINE L1 -2924 3222 3107 298 121 30 0 chrX 21303033 21303099 -155671041 + (CA)n Simple_repeat Simple_repeat 1 68 0 258 250 53 13 chrX 21303127 21303203 -155670937 + MIR SINE MIR 57 135 -127 2316 192 32 6 chrX 21303329 21303829 -155670311 - L1MB1 LINE L1 -11 6157 5645 677 336 32 8 chrX 21305692 21305942 -155668198 - MIR SINE MIR 0 262 7 279 133 0 0 chrX 21308511 21308556 -155665584 + (CA)n Simple_repeat Simple_repeat 2 46 0 258 257 22 73 chrX 21308628 21308764 -155665376 - MLT1K LTR MaLR -67 521 393 228 309 0 0 chrX 21309450 21309505 -155664635 - L2 LINE L2 -8 3264 3210 2058 108 3 30 chrX 21313421 21313726 -155660414 - AluSx SINE Alu -15 297 1 325 218 46 23 chrX 21314219 21314306 -155659834 + L2 LINE L2 3153 3241 -72 1243 186 22 19 chrX 21314431 21314700 -155659440 - L1MA9 LINE L1 -436 5876 5607 1449 128 13 0 chrX 21314743 21314969 -155659171 - AluSq SINE Alu -16 297 69 3259 64 7 0 chrX 21314969 21315391 -155658749 + L1PA8 LINE L1 5745 6169 -3 1875 91 0 0 chrX 21365864 21366106 -155608034 - AluY SINE Alu -1 310 69 207 0 0 0 chrX 21367020 21367043 -155607097 + (TG)n Simple_repeat Simple_repeat 2 24 0 205 309 10 41 chrX 21370275 21370372 -155603768 - L2 LINE L2 -45 3268 3175 486 217 43 0 chrX 21370426 21370541 -155603599 + L1MA8 LINE L1 6170 6289 -2 421 299 104 94 chrX 21370672 21370845 -155603295 - L2 LINE L2 -343 2971 2801 2162 112 0 19 chrX 21370845 21371158 -155602982 + AluSx SINE Alu 1 307 -5 421 299 104 94 chrX 21371158 21371762 -155602378 - L2 LINE L2 -513 2801 2186 2207 104 7 0 chrX 21373437 21373735 -155600405 + AluSg SINE Alu 1 300 -10 258 176 0 40 chrX 21374691 21374765 -155599375 - L1MA4 LINE L1 -1 6299 6229 551 116 9 62 chrX 21374858 21374970 -155599170 - L1MA4A LINE L1 -8 6295 6190 519 101 0 0 chrX 21375921 21376000 -155598140 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 7466 25 0 0 chrX 21376735 21378143 -155595997 - L1PA4 LINE L1 -1 6154 4739 9068 39 0 0 chrX 21378143 21379245 -155594895 + L1P LINE L1 3683 4784 -1362 184 299 45 15 chrX 21379659 21379726 -155594414 - MER5B DNA MER1_type -103 75 7 327 87 0 0 chrX 21381476 21381522 -155592618 - MADE1 DNA Mariner -34 46 1 207 305 12 49 chrX 21381889 21381971 -155592169 - L2 LINE L2 -36 3236 3158 386 262 86 27 chrX 21382343 21382530 -155591610 + L1MB8 LINE L1 5965 6162 -16 3077 128 31 4 chrX 21383004 21383526 -155590614 - L1MA2 LINE L1 0 6304 5769 6586 31 0 0 chrX 21383529 21384310 -155589830 - L1PA3 LINE L1 -8 6147 5367 5794 45 0 0 chrX 21384308 21385012 -155589128 + L1P LINE L1 3553 4256 -1890 * 3777 159 21 5 chrX 21384993 21386173 -155587967 - L1MA2 LINE L1 -523 5782 4585 * 22 70 0 0 chrX 21388141 21388184 -155585956 + AT_rich Low_complexity Low_complexity 1 43 0 271 234 170 0 chrX 21388286 21388380 -155585760 - MER103 DNA DNA -49 117 8 501 255 59 7 chrX 21388865 21389018 -155585122 - MER69A DNA AcHobo -15 162 2 1404 55 0 11 chrX 21389285 21389468 -155584672 - L1PA5 LINE L1 -6 6148 5968 231 244 221 16 chrX 21389752 21389879 -155584261 + MIR SINE MIR 66 218 -44 261 98 0 0 chrX 21389923 21389964 -155584176 + (T)n Simple_repeat Simple_repeat 1 41 0 188 314 118 29 chrX 21390429 21390531 -155583609 - MIR SINE MIR -105 157 47 774 263 132 63 chrX 21391800 21392305 -155581835 - MLT1G1 LTR MaLR -63 504 5 2078 118 0 3 chrX 21392306 21392623 -155581517 + AluSx SINE Alu 1 316 0 670 193 0 0 chrX 21394046 21394165 -155579975 + FLAM_C SINE Alu 1 119 -24 216 0 0 0 chrX 21394165 21394189 -155579951 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 445 162 0 0 chrX 21394488 21394556 -155579584 - AluS SINE Alu -245 68 1 21 57 0 0 chrX 21395594 21395629 -155578511 + AT_rich Low_complexity Low_complexity 1 35 0 250 283 17 0 chrX 21395786 21395846 -155578294 - MIR SINE MIR -170 92 32 21 82 0 0 chrX 21396268 21396317 -155577823 + AT_rich Low_complexity Low_complexity 1 49 0 251 320 0 0 chrX 21397484 21397559 -155576581 + (CATA)n Simple_repeat Simple_repeat 2 76 0 241 158 0 0 chrX 21397610 21397648 -155576492 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 381 323 0 24 chrX 21397893 21398020 -155576120 + L2 LINE L2 3190 3313 0 231 232 0 0 chrX 21398678 21398734 -155575406 - L1MC4 LINE L1 -1339 6703 6648 3583 177 20 4 chrX 21399252 21399948 -155574192 - L1 LINE L1 -937 5209 4503 27 0 0 0 chrX 21400738 21400765 -155573375 + AT_rich Low_complexity Low_complexity 1 27 0 309 292 114 0 chrX 21401562 21401713 -155572427 - MLT1A2 LTR MaLR -11 379 188 21 0 0 0 chrX 21401727 21401748 -155572392 + AT_rich Low_complexity Low_complexity 1 21 0 204 97 0 0 chrX 21402475 21402506 -155571634 + (CA)n Simple_repeat Simple_repeat 2 32 0 26 30 0 0 chrX 21404036 21404069 -155570071 + AT_rich Low_complexity Low_complexity 1 33 0 29 47 0 0 chrX 21406185 21406228 -155567912 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chrX 21406436 21406463 -155567677 + AT_rich Low_complexity Low_complexity 1 27 0 33 0 0 0 chrX 21406712 21406745 -155567395 + AT_rich Low_complexity Low_complexity 1 33 0 493 160 0 11 chrX 21407019 21407113 -155567027 - L1MA3 LINE L1 0 6305 6213 1894 137 20 3 chrX 21408568 21408868 -155565272 - AluSq SINE Alu -8 305 1 381 130 29 0 chrX 21409977 21410046 -155564094 - L1PA16 LINE L1 -3 6163 6093 3392 195 10 6 chrX 21410048 21410908 -155563232 + L1P4 LINE L1 4639 5501 -665 1271 255 43 6 chrX 21411152 21411481 -155562659 + MER58B DNA MER1_type 1 341 0 313 323 0 0 chrX 21412525 21412624 -155561516 + L2 LINE L2 3206 3304 -9 567 200 0 10 chrX 21413776 21413876 -155560264 - MER5B DNA MER1_type -2 176 78 306 269 32 86 chrX 21414559 21414745 -155559395 - MER104 DNA Tc2 -4 176 1 274 279 25 0 chrX 21417251 21417330 -155556810 - HsTC2 DNA Tc2 -1326 572 492 337 221 0 0 chrX 21417332 21417409 -155556731 - HsTC2 DNA Tc2 -1600 298 222 188 300 125 25 chrX 21417552 21417620 -155556520 + L2 LINE L2 3190 3265 -48 261 381 122 0 chrX 21417620 21417759 -155556381 + MER91A DNA MER1_type 4 159 -37 1717 227 45 18 chrX 21418790 21419284 -155554856 + Charlie4a DNA MER1_type 2 508 0 32 81 0 0 chrX 21419380 21419454 -155554686 + AT_rich Low_complexity Low_complexity 1 74 0 23 33 0 0 chrX 21419981 21420011 -155554129 + AT_rich Low_complexity Low_complexity 1 30 0 240 208 21 0 chrX 21420387 21420435 -155553705 + CT-rich Low_complexity Low_complexity 3 51 0 322 241 11 0 chrX 21421767 21421854 -155552286 + CT-rich Low_complexity Low_complexity 2 89 0 237 119 0 0 chrX 21422260 21422302 -155551838 + (TC)n Simple_repeat Simple_repeat 1 42 0 261 0 0 0 chrX 21424036 21424065 -155550075 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1866 130 4 0 chrX 21424084 21424360 -155549780 - AluSx SINE Alu -35 277 1 68 24 0 0 chrX 21424939 21425021 -155549119 + AT_rich Low_complexity Low_complexity 1 82 0 309 284 46 72 chrX 21425749 21425969 -155548171 + MIR SINE MIR 4 216 -46 375 60 0 0 chrX 21427166 21427216 -155546924 + (TG)n Simple_repeat Simple_repeat 1 50 0 233 379 21 0 chrX 21427277 21427372 -155546768 - L2 LINE L2 -681 2633 2537 * 292 307 49 43 chrX 21427366 21427529 -155546611 + MER5A DNA MER1_type 24 187 -2 * 776 219 7 0 chrX 21427390 21427545 -155546595 - MER5A DNA MER1_type -33 156 1 2169 103 3 7 chrX 21427677 21427979 -155546161 + AluSx SINE Alu 1 301 -11 243 0 0 0 chrX 21428459 21428486 -155545654 + (T)n Simple_repeat Simple_repeat 1 27 0 30 27 0 0 chrX 21428918 21428955 -155545185 + AT_rich Low_complexity Low_complexity 1 37 0 210 298 0 0 chrX 21429734 21429791 -155544349 + GA-rich Low_complexity Low_complexity 4 60 0 27 0 0 0 chrX 21430228 21430255 -155543885 + AT_rich Low_complexity Low_complexity 1 27 0 26 74 0 0 chrX 21430276 21430330 -155543810 + AT_rich Low_complexity Low_complexity 1 54 0 833 234 117 3 chrX 21432269 21432559 -155541581 + MER33 DNA MER1_type 1 323 -1 307 292 10 10 chrX 21432747 21432843 -155541297 - L3 LINE CR1 -197 1380 1285 213 267 151 48 chrX 21433465 21433611 -155540529 - L3 LINE CR1 -1046 531 371 854 271 102 0 chrX 21433721 21433946 -155540194 - MIR SINE MIR 0 262 15 22 35 0 0 chrX 21436754 21436783 -155537357 + AT_rich Low_complexity Low_complexity 1 29 0 250 253 25 25 chrX 21443651 21443730 -155530410 + MER116 DNA Mariner 1 79 -1 198 74 0 0 chrX 21444395 21444422 -155529718 + L2 LINE L2 3274 3300 -13 192 200 0 0 chrX 21444711 21444756 -155529384 + (TAGG)n Simple_repeat Simple_repeat 1 45 0 288 291 221 17 chrX 21445592 21445764 -155528376 + MIR SINE MIR 6 212 -50 274 278 121 60 chrX 21446690 21446938 -155527202 + L1MEc LINE L1 1493 1755 -4641 561 311 153 43 chrX 21447467 21448093 -155526047 + L2 LINE L2 2282 2976 -338 628 112 20 0 chrX 21448550 21448648 -155525492 + AluS SINE Alu 1 100 -213 318 217 50 50 chrX 21448648 21448809 -155525331 + (CATATA)n Simple_repeat Simple_repeat 2 162 0 413 206 71 24 chrX 21448813 21448983 -155525157 + (TA)n Simple_repeat Simple_repeat 1 178 0 214 194 83 0 chrX 21449019 21449091 -155525049 + (TA)n Simple_repeat Simple_repeat 1 78 0 314 131 62 35 chrX 21449097 21449242 -155524898 + (TATATG)n Simple_repeat Simple_repeat 2 150 0 446 157 63 0 chrX 21449335 21449494 -155524646 + (TA)n Simple_repeat Simple_repeat 1 169 0 904 184 6 0 chrX 21449494 21449657 -155524483 + AluSg/x SINE Alu 130 293 -19 333 323 71 13 chrX 21449764 21449919 -155524221 - MIR SINE MIR -50 212 49 305 277 89 9 chrX 21449964 21450076 -155524064 + MER103 DNA DNA 1 121 -45 24 32 0 0 chrX 21450895 21450926 -155523214 + AT_rich Low_complexity Low_complexity 1 31 0 379 323 48 33 chrX 21451398 21451683 -155522457 + L1MEc LINE L1 1535 1798 -857 344 299 84 13 chrX 21451795 21451949 -155522191 + L2 LINE L2 2042 2206 -1108 495 316 146 40 chrX 21452027 21452412 -155521728 + L2 LINE L2 2646 3115 -198 299 25 25 0 chrX 21452412 21452452 -155521688 + (CA)n Simple_repeat Simple_repeat 1 41 0 495 316 146 40 chrX 21452452 21452674 -155521466 + L2 LINE L2 3115 3312 -1 247 208 0 0 chrX 21454083 21454131 -155520009 - L2 LINE L2 -1 3271 3224 603 326 51 43 chrX 21455395 21455809 -155518331 + L2 LINE L2 2877 3293 -20 192 40 0 0 chrX 21455817 21455842 -155518298 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chrX 21456923 21456945 -155517195 + AT_rich Low_complexity Low_complexity 1 22 0 180 179 0 0 chrX 21457821 21457860 -155516280 + GA-rich Low_complexity Low_complexity 3 41 0 2086 117 0 7 chrX 21457944 21458243 -155515897 - AluSx SINE Alu -15 297 1 802 78 0 0 chrX 21458961 21459064 -155515076 + AluSg/x SINE Alu 200 302 -10 380 355 24 24 chrX 21460095 21460385 -155513755 - L1M4 LINE L1 -3539 2607 2318 1911 127 22 6 chrX 21460574 21460896 -155513244 - L1MA4A LINE L1 -5 6298 5972 23 33 0 0 chrX 21461330 21461360 -155512780 + AT_rich Low_complexity Low_complexity 1 30 0 1829 186 21 3 chrX 21461532 21461870 -155512270 + MER2 DNA MER2_type 1 344 0 647 275 42 108 chrX 21462083 21462271 -155511869 - HAL1 LINE L1 -962 1545 1346 1493 188 7 14 chrX 21462271 21462581 -155511559 - AluJo SINE Alu 0 316 9 647 275 42 108 chrX 21462581 21463079 -155511061 - HAL1 LINE L1 -1161 1346 903 180 0 0 0 chrX 21463185 21463205 -155510935 + (TTG)n Simple_repeat Simple_repeat 2 21 0 809 214 39 34 chrX 21464308 21464514 -155509626 + MER3 DNA MER1_type 2 208 -1 277 259 59 0 chrX 21464989 21465074 -155509066 + MER103 DNA DNA 18 107 -59 222 220 20 0 chrX 21465436 21465486 -155508654 - L2 LINE L2 0 3313 3263 309 177 135 21 chrX 21468904 21469000 -155505140 + L1MA1 LINE L1 5884 5990 -312 14444 91 28 9 chrX 21469341 21472243 -155501897 - L1PA7 LINE L1 0 6154 3187 4448 214 16 17 chrX 21474707 21475828 -155498312 - L1P LINE L1 -2297 3849 2730 1506 155 74 0 chrX 21475829 21476087 -155498053 + Tigger3(Golem) DNA MER2_type 2752 3028 -1 331 315 30 80 chrX 21476528 21476557 -155497583 - MIR SINE MIR -60 202 173 761 221 35 0 chrX 21476557 21476729 -155497411 - MER45A DNA AcHobo 0 178 1 331 315 30 80 chrX 21476729 21476899 -155497241 - MIR SINE MIR -89 173 13 200 359 67 26 chrX 21476923 21477118 -155497022 + L3 LINE CR1 341 543 -1034 252 373 34 52 chrX 21478034 21478302 -155495838 + L3 LINE CR1 1191 1453 -124 26 30 0 0 chrX 21478971 21479004 -155495136 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chrX 21480232 21480269 -155493871 + AT_rich Low_complexity Low_complexity 1 37 0 205 161 0 0 chrX 21481182 21481213 -155492927 + polypyrimidine Low_complexity Low_complexity 2 32 0 1664 204 24 3 chrX 21481925 21482259 -155491881 + MER58B DNA MER1_type 1 341 0 251 345 26 26 chrX 21482872 21482988 -155491152 - MIR SINE MIR 0 262 147 449 261 39 8 chrX 21483095 21483225 -155490915 - MER94 DNA DNA 0 134 1 2135 98 0 14 chrX 21483610 21483905 -155490235 - AluSg1 SINE Alu -18 291 1 348 256 178 91 chrX 21484167 21484230 -155489910 + MIR SINE MIR 7 63 -199 1595 150 0 4 chrX 21484230 21484496 -155489644 - L1PA15 LINE L1 0 6165 5901 348 256 178 91 chrX 21484496 21484662 -155489478 + MIR SINE MIR 63 256 -6 183 162 0 0 chrX 21484768 21484805 -155489335 + (ATGGTG)n Simple_repeat Simple_repeat 2 38 0 181 268 36 18 chrX 21485391 21485447 -155488693 + L2 LINE L2 3216 3272 0 210 171 98 0 chrX 21486680 21486721 -155487419 - MIR SINE MIR -123 139 95 601 237 69 0 chrX 21487050 21487223 -155486917 + MER5A DNA MER1_type 1 185 -4 591 205 0 10 chrX 21487241 21487387 -155486753 - MER5A DNA MER1_type 0 189 4 2314 122 58 23 chrX 21487463 21487896 -155486244 - LTR7 LTR ERV1 -2 448 1 615 352 131 21 chrX 21488421 21489213 -155484927 + L2 LINE L2 1871 2749 -565 222 167 0 24 chrX 21489316 21489358 -155484782 + MER5C DNA MER1_type 36 76 -248 223 346 85 90 chrX 21489552 21489765 -155484375 + L2 LINE L2 2866 3078 -194 2111 122 0 0 chrX 21489765 21490069 -155484071 - AluSc SINE Alu -5 304 1 223 346 85 90 chrX 21490069 21490257 -155483883 + L2 LINE L2 3078 3265 -7 1021 268 70 68 chrX 21490285 21490796 -155483344 - LTR33A LTR ERVL -11 512 1 192 371 56 0 chrX 21490810 21490899 -155483241 + MIR SINE MIR 50 143 -65 1628 221 11 32 chrX 21491193 21491408 -155482732 + MLT1A2 LTR MaLR 5 210 -164 1793 172 92 25 chrX 21491408 21491809 -155482331 - MSTA LTR MaLR 0 428 1 1628 221 11 32 chrX 21491809 21491969 -155482171 + MLT1A2 LTR MaLR 210 372 -2 991 257 0 0 chrX 21492954 21493160 -155480980 - MER58A DNA MER1_type -16 208 3 554 345 15 15 chrX 21493400 21493606 -155480534 - MIR SINE MIR -27 235 30 380 125 0 0 chrX 21496464 21496520 -155477620 - MER4A LTR ERV1 0 664 609 1016 109 34 0 chrX 21496520 21496667 -155477473 + AluSg/x SINE Alu 161 312 0 2753 126 66 72 chrX 21496669 21496831 -155477309 - MER4B LTR ERV1 -40 570 409 2304 82 0 19 chrX 21496831 21497146 -155476994 + AluY SINE Alu 3 311 0 2753 126 66 72 chrX 21497146 21497556 -155476584 - MER4B LTR ERV1 -201 409 1 2202 114 0 0 chrX 21497729 21498027 -155476113 - AluSx SINE Alu -14 298 1 222 200 67 0 chrX 21501675 21501720 -155472420 + L2 LINE L2 3216 3263 -9 2541 30 0 7 chrX 21501820 21502121 -155472019 + AluY SINE Alu 1 299 -12 3722 146 58 7 chrX 21502234 21502907 -155471233 - MER39 LTR ERV1 0 707 1 1011 346 77 32 chrX 21503378 21503521 -155470619 - L2 LINE L2 -465 2849 2714 740 202 40 0 chrX 21503521 21503694 -155470446 + L1MA4 LINE L1 6117 6296 -4 1011 346 77 32 chrX 21503694 21503922 -155470218 - L2 LINE L2 -600 2714 2498 1722 192 40 0 chrX 21503922 21504271 -155469869 - MLT1A1 LTR MaLR -1 364 2 1011 346 77 32 chrX 21504271 21504741 -155469399 - L2 LINE L2 -816 2498 1969 975 118 0 0 chrX 21504741 21504877 -155469263 + AluSc SINE Alu 156 291 -18 271 385 53 15 chrX 21504884 21505149 -155468991 - L2 LINE L2 -1707 1607 1333 180 0 0 0 chrX 21505189 21505209 -155468931 + (A)n Simple_repeat Simple_repeat 1 20 0 1111 292 60 22 chrX 21505249 21505615 -155468525 - LTR16C LTR ERVL 0 491 112 198 325 77 0 chrX 21505805 21505922 -155468218 + L3 LINE CR1 632 757 -820 187 323 43 11 chrX 21506082 21506175 -155467965 + MIR SINE MIR 93 188 -74 355 313 31 82 chrX 21506237 21506528 -155467612 + L3 LINE CR1 775 1050 -527 1078 152 152 62 chrX 21506676 21506966 -155467174 - L1MA8 LINE L1 -258 6033 5718 243 0 0 0 chrX 21507029 21507056 -155467084 + (A)n Simple_repeat Simple_repeat 1 27 0 562 280 75 29 chrX 21507086 21507443 -155466697 - MLT1H1 LTR MaLR -9 546 152 472 325 43 43 chrX 21507491 21507725 -155466415 + L3 LINE CR1 1313 1546 -31 225 94 0 0 chrX 21508393 21508425 -155465715 + (AATAG)n Simple_repeat Simple_repeat 2 33 0 375 266 288 14 chrX 21510204 21510343 -155463797 + MER5A DNA MER1_type 10 186 -3 2466 21 7 0 chrX 21511308 21511593 -155462547 - AluY SINE Alu -23 288 2 623 358 157 28 chrX 21512051 21512765 -155461375 + L2 LINE L2 1940 2759 -555 2285 242 26 8 chrX 21512765 21513368 -155460772 + MER90 LTR ERV1 1 614 0 623 358 157 28 chrX 21513368 21513413 -155460727 + L2 LINE L2 2759 2797 -517 2326 77 3 7 chrX 21514502 21514812 -155459328 - AluSc SINE Alu 0 309 1 206 350 0 0 chrX 21514814 21514874 -155459266 - L2 LINE L2 -1413 1901 1842 223 235 0 20 chrX 21515026 21515077 -155459063 + (TA)n Simple_repeat Simple_repeat 1 50 0 939 298 148 24 chrX 21515454 21516218 -155457922 - L2 LINE L2 -21 3292 2421 736 289 50 15 chrX 21516219 21516479 -155457661 - L2 LINE L2 -1176 2138 1870 21 0 0 0 chrX 21516845 21516866 -155457274 + AT_rich Low_complexity Low_complexity 1 21 0 2420 73 0 0 chrX 21516944 21517244 -155456896 + AluY SINE Alu 1 300 -11 353 291 71 8 chrX 21517419 21517546 -155456594 - MIR SINE MIR -71 191 57 330 289 72 102 chrX 21517592 21517897 -155456243 - L3 LINE CR1 -338 1239 944 280 348 36 22 chrX 21518096 21518234 -155455906 + MIR3 SINE MIR 4 143 -65 403 125 28 14 chrX 21518372 21518444 -155455696 + MIR SINE MIR 106 178 -84 5868 179 23 22 chrX 21519694 21521048 -155453092 - L1MC1 LINE L1 -2 6331 4981 909 155 140 10 chrX 21521148 21521348 -155452792 - L1PA16 LINE L1 0 6166 5941 2243 104 0 10 chrX 21521404 21521712 -155452428 - AluSx SINE Alu -7 305 1 1083 239 19 0 chrX 21521892 21522155 -155451985 - L1MC1 LINE L1 -1173 4973 4706 2082 86 33 43 chrX 21522197 21522501 -155451639 + AluSg SINE Alu 1 301 -9 1260 198 0 30 chrX 21522666 21522934 -155451206 - AluJo SINE Alu -32 280 21 746 207 9 68 chrX 21522974 21523196 -155450944 - MER3 DNA MER1_type 0 209 1 205 255 20 0 chrX 21525736 21525787 -155448353 + L2 LINE L2 3252 3303 -10 25 90 0 0 chrX 21528042 21528109 -155446031 + AT_rich Low_complexity Low_complexity 1 67 0 23 33 0 0 chrX 21530323 21530353 -155443787 + AT_rich Low_complexity Low_complexity 1 30 0 634 171 0 0 chrX 21531058 21531169 -155442971 - FRAM SINE Alu -9 167 57 620 317 53 28 chrX 21531397 21531640 -155442500 - MIR SINE MIR -8 254 3 2239 64 4 0 chrX 21533715 21533996 -155440144 - AluY SINE Alu -29 282 1 29 60 0 0 chrX 21534247 21534297 -155439843 + AT_rich Low_complexity Low_complexity 1 50 0 295 186 157 0 chrX 21535563 21535633 -155438507 - LTR33 LTR ERVL -432 89 9 265 160 20 0 chrX 21536040 21536090 -155438050 - L1PA14 LINE L1 -251 5910 5860 911 213 72 61 chrX 21536393 21536838 -155437302 - MLT1B LTR MaLR 0 390 1 213 347 50 33 chrX 21537017 21537138 -155437002 - L2 LINE L2 -249 3064 2942 5934 30 1 0 chrX 21538857 21539582 -155434558 - L1P LINE L1 -809 5337 4612 835 199 74 61 chrX 21539582 21539879 -155434261 - MER33 DNA MER1_type -3 321 21 463 216 0 10 chrX 21539888 21539985 -155434155 + MER94 DNA DNA 5 100 -34 2177 108 13 3 chrX 21540013 21540319 -155433821 + AluSq SINE Alu 1 309 -4 191 243 20 7 chrX 21540376 21540524 -155433616 + (TA)n Simple_repeat Simple_repeat 1 150 0 207 0 0 0 chrX 21542210 21542233 -155431907 + (T)n Simple_repeat Simple_repeat 1 23 0 1734 184 4 1 chrX 21543412 21543751 -155430389 + L1MB8 LINE L1 5667 6005 -173 328 369 131 24 chrX 21544148 21544785 -155429355 - L2 LINE L2 -8 3264 2552 47 19 0 0 chrX 21545047 21545101 -155429039 + AT_rich Low_complexity Low_complexity 1 54 0 230 275 22 22 chrX 21545348 21545439 -155428701 + L1MC4 LINE L1 6614 6704 -1338 218 383 0 33 chrX 21545447 21545627 -155428513 + (CA)n Simple_repeat Simple_repeat 2 175 0 * 375 315 34 0 chrX 21545496 21545645 -155428495 + (CATA)n Simple_repeat Simple_repeat 3 156 0 255 61 0 0 chrX 21545646 21545679 -155428461 + (CA)n Simple_repeat Simple_repeat 2 34 0 1850 143 21 13 chrX 21545698 21546176 -155427964 - L1M2 LINE L1 -700 5591 5110 602 190 30 10 chrX 21546175 21546331 -155427809 + L1MC/D LINE L1 5693 5854 -545 * 2411 180 17 19 chrX 21546391 21546908 -155427232 + L1MA7 LINE L1 5776 6291 0 397 150 110 20 chrX 21547957 21548057 -155426083 - MER33 DNA MER1_type -1 362 254 528 248 43 7 chrX 21548090 21548231 -155425909 - MER33 DNA MER1_type -178 146 1 203 305 0 0 chrX 21548518 21548577 -155425563 + CT-rich Low_complexity Low_complexity 3 61 0 5825 165 18 14 chrX 21550116 21551813 -155422327 + L1PB1 LINE L1 4093 5792 -359 300 91 0 0 chrX 21551813 21551857 -155422283 + (TG)n Simple_repeat Simple_repeat 2 45 0 5825 165 18 14 chrX 21551857 21552218 -155421922 + L1PB1 LINE L1 5792 6150 -1 229 291 69 11 chrX 21552694 21552869 -155421271 - L1MEc LINE L1 -5195 1201 1017 183 80 0 0 chrX 21552981 21553006 -155421134 + (CATATA)n Simple_repeat Simple_repeat 4 28 0 267 262 19 16 chrX 21553350 21553461 -155420679 + MIR SINE MIR 19 130 -78 185 322 107 33 chrX 21553464 21553585 -155420555 + MIR SINE MIR 108 237 -25 1705 198 27 0 chrX 21554263 21554597 -155419543 + MER2 DNA MER2_type 1 343 -1 2149 104 3 7 chrX 21554762 21555059 -155419081 - AluSq SINE Alu -17 296 1 27 29 0 0 chrX 21555685 21555719 -155418421 + AT_rich Low_complexity Low_complexity 1 34 0 251 191 16 16 chrX 21556167 21556230 -155417910 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 227 161 0 36 chrX 21556306 21556362 -155417778 + L1ME LINE L1 5808 5861 -260 21 0 0 0 chrX 21556802 21556823 -155417317 + AT_rich Low_complexity Low_complexity 1 21 0 890 236 10 10 chrX 21558151 21558350 -155415790 - MLT1D LTR MaLR 0 505 307 253 218 115 0 chrX 21558351 21558429 -155415711 + L1MC4 LINE L1 6614 6700 -1342 240 181 64 21 chrX 21558436 21558530 -155415610 + (TA)n Simple_repeat Simple_repeat 1 98 0 193 279 0 0 chrX 21559031 21559074 -155415066 - L2 LINE L2 -88 3225 3183 1847 199 40 86 chrX 21559083 21559606 -155414534 - MLT1D LTR MaLR 0 505 7 2188 118 0 3 chrX 21560172 21560478 -155413662 + AluSc SINE Alu 3 307 -2 23 33 0 0 chrX 21560583 21560613 -155413527 + AT_rich Low_complexity Low_complexity 1 30 0 900 209 0 68 chrX 21561530 21561765 -155412375 + MER20 DNA MER1_type 1 219 0 1737 174 0 13 chrX 21563075 21563380 -155410760 - AluJo SINE Alu -11 301 1 1318 184 132 16 chrX 21563644 21563948 -155410192 + MER44D DNA MER2_type 1 609 0 21 36 0 0 chrX 21564232 21564260 -155409880 + AT_rich Low_complexity Low_complexity 1 28 0 359 308 179 48 chrX 21565104 21565684 -155408456 - L2 LINE L2 -74 3239 2599 1520 154 25 3 chrX 21565721 21566006 -155408134 - L1M2 LINE L1 -693 5604 5314 591 176 0 0 chrX 21566082 21566184 -155407956 + L1MA9 LINE L1 5161 5262 -884 1871 174 27 37 chrX 21566699 21567106 -155407034 - L1MA10 LINE L1 0 6334 5932 3368 166 31 23 chrX 21567107 21567803 -155406337 + L1MA10 LINE L1 5207 5909 -403 622 360 29 0 chrX 21567830 21568072 -155406068 + MIR SINE MIR 9 257 -5 2196 273 150 39 chrX 21568296 21569405 -155404735 + L2 LINE L2 1331 2562 -752 483 18 0 0 chrX 21569419 21569475 -155404665 + (CA)n Simple_repeat Simple_repeat 1 56 0 336 294 147 42 chrX 21570229 21570794 -155403346 - L1MC4a LINE L1 -1909 5899 5276 244 241 0 0 chrX 21571394 21571452 -155402688 + A-rich Low_complexity Low_complexity 1 58 0 25 0 0 0 chrX 21571512 21571537 -155402603 + AT_rich Low_complexity Low_complexity 1 25 0 419 351 90 5 chrX 21572254 21572465 -155401675 + MIR SINE MIR 34 262 0 21 0 0 0 chrX 21572488 21572509 -155401631 + AT_rich Low_complexity Low_complexity 1 21 0 242 157 0 0 chrX 21572617 21572668 -155401472 + L1MA4A LINE L1 6246 6296 -7 483 305 64 84 chrX 21572745 21573138 -155401002 - L2 LINE L2 -4 3309 2925 406 303 0 42 chrX 21573359 21573500 -155400640 - MIR3 SINE MIR -15 193 57 943 41 0 86 chrX 21573529 21573777 -155400363 + (TTTCC)n Simple_repeat Simple_repeat 1 226 0 22 0 0 0 chrX 21574638 21574660 -155399480 + AT_rich Low_complexity Low_complexity 1 22 0 686 255 0 65 chrX 21574751 21574951 -155399189 - MER5A DNA MER1_type 0 189 3 321 306 16 75 chrX 21575378 21575564 -155398576 + MIR SINE MIR 84 258 -4 923 296 68 38 chrX 21575803 21576276 -155397864 + LTR16C LTR ERVL 1 487 -4 2202 222 52 16 chrX 21576336 21576890 -155397250 - MER90 LTR ERV1 0 575 2 643 315 50 5 chrX 21577655 21577874 -155396266 + MIR SINE MIR 9 237 -25 198 378 0 0 chrX 21578672 21578746 -155395394 - L2 LINE L2 -4 3268 3195 397 327 149 33 chrX 21579189 21579793 -155394347 - L1MEc LINE L1 -826 1664 1320 279 278 29 54 chrX 21579897 21580102 -155394038 - L1MEc LINE L1 -4936 1183 984 832 301 81 17 chrX 21583180 21583998 -155390142 - L1ME2 LINE L1 -281 5883 5016 375 281 119 32 chrX 21584022 21584367 -155389773 + L1ME4a LINE L1 5573 5947 -174 238 267 93 23 chrX 21585653 21585739 -155388401 - MIR3 SINE MIR -9 199 108 518 411 21 7 chrX 21585825 21586107 -155388033 + L3 LINE CR1 918 1203 -374 205 254 28 28 chrX 21587940 21588011 -155386129 - MIR SINE MIR -34 228 158 1520 167 4 7 chrX 21589087 21589356 -155384784 - AluJb SINE Alu -16 296 29 418 197 0 71 chrX 21589695 21589822 -155384318 - LTR41 LTR ERVL -6 767 650 474 204 217 0 chrX 21590344 21590496 -155383644 - LTR41 LTR ERVL -586 187 3 240 261 274 45 chrX 21590496 21590653 -155383487 + MIR SINE MIR 57 249 -13 372 163 0 0 chrX 21590756 21590842 -155383298 + (TA)n Simple_repeat Simple_repeat 2 87 0 899 120 0 0 chrX 21591614 21591747 -155382393 - AluSg/x SINE Alu 0 312 180 250 255 0 113 chrX 21592278 21592350 -155381790 - MIR SINE MIR -37 225 167 2226 114 0 0 chrX 21592350 21592658 -155381482 - AluSx SINE Alu -4 308 1 250 255 0 113 chrX 21592658 21592691 -155381449 - MIR SINE MIR -95 167 132 379 307 43 64 chrX 21594007 21594427 -155379713 + L1MEd LINE L1 529 939 -5180 4689 197 12 21 chrX 21594603 21595643 -155378497 + L1MA10 LINE L1 5274 6304 -30 479 291 90 19 chrX 21595653 21596086 -155378054 + L1MEd LINE L1 1131 1594 -4535 232 339 0 15 chrX 21596428 21596540 -155377600 + A-rich Low_complexity Low_complexity 1 112 -16 1416 131 86 96 chrX 21596540 21596854 -155377286 + AluSq SINE Alu 1 311 -2 232 339 0 15 chrX 21596854 21596871 -155377269 + A-rich Low_complexity Low_complexity 112 128 0 462 319 132 6 chrX 21596916 21597142 -155376998 + L1MEd LINE L1 2160 2445 -3684 1964 136 10 0 chrX 21597142 21597437 -155376703 + AluSx SINE Alu 1 298 -14 462 319 132 6 chrX 21597437 21597552 -155376588 + L1MEd LINE L1 2445 2544 -3585 619 310 129 34 chrX 21597762 21598550 -155375590 + L1MEd LINE L1 2862 3760 -2369 902 283 52 15 chrX 21598571 21598896 -155375244 + L2 LINE L2 2153 2489 -825 5159 159 38 11 chrX 21598943 21600362 -155373778 - L1PA15 LINE L1 -16 6149 4696 782 239 24 0 chrX 21601339 21601506 -155372634 - MER45A DNA AcHobo 0 178 8 22 0 0 0 chrX 21602197 21602219 -155371921 + AT_rich Low_complexity Low_complexity 1 22 0 201 237 0 0 chrX 21602544 21602603 -155371537 + (TA)n Simple_repeat Simple_repeat 1 59 0 225 266 106 32 chrX 21603715 21603809 -155370331 - MER5A DNA MER1_type -73 116 16 329 329 0 28 chrX 21607092 21607302 -155366838 + G-rich Low_complexity Low_complexity 1 204 0 201 175 0 0 chrX 21607345 21607385 -155366755 + (TA)n Simple_repeat Simple_repeat 2 41 0 313 299 23 0 chrX 21607391 21607478 -155366662 + L1MC4 LINE L1 6614 6702 -1340 * 314 258 0 43 chrX 21607407 21607500 -155366640 - L1MC4 LINE L1 -1339 6703 6615 255 125 0 0 chrX 21607500 21607540 -155366600 + (CA)n Simple_repeat Simple_repeat 1 40 0 1686 129 47 85 chrX 21607549 21607913 -155366227 - THE1C LTR MaLR -25 350 1 1361 145 0 12 chrX 21608228 21608469 -155365671 + L1MA2 LINE L1 6054 6291 -13 500 309 83 13 chrX 21608891 21609121 -155365019 - MIR SINE MIR -6 256 11 2374 68 0 3 chrX 21609724 21610040 -155364100 - AluY SINE Alu 0 315 1 186 189 0 0 chrX 21610042 21610079 -155364061 + (TTA)n Simple_repeat Simple_repeat 2 38 0 805 165 61 25 chrX 21610241 21610539 -155363601 + MSTA LTR MaLR 1 369 -57 * 1499 191 88 41 chrX 21610533 21610895 -155363245 + MSTA LTR MaLR 33 411 -17 577 330 19 15 chrX 21613411 21613617 -155360523 - MIR SINE MIR -4 258 52 802 302 141 12 chrX 21613701 21614105 -155360035 + L2 LINE L2 2852 3307 -6 781 138 0 58 chrX 21616293 21616431 -155357709 - FLAM_C SINE Alu -2 131 2 290 359 122 30 chrX 21618482 21618744 -155355396 - L3 LINE CR1 -12 1565 1280 432 0 0 0 chrX 21619407 21619455 -155354685 + (GA)n Simple_repeat Simple_repeat 1 48 0 2687 28 0 0 chrX 21619512 21619832 -155354308 - L1PA4 LINE L1 -1 6154 5835 524 115 0 0 chrX 21620143 21620221 -155353919 + (GGGGA)n Simple_repeat Simple_repeat 4 81 0 420 323 31 21 chrX 21620396 21620588 -155353552 + MIR3 SINE MIR 15 208 0 1614 112 16 0 chrX 21620732 21620983 -155353157 + L1MA5A LINE L1 6040 6294 -3 202 340 0 0 chrX 21621248 21621301 -155352839 + MIR3 SINE MIR 111 163 -45 9591 191 32 18 chrX 21621529 21624557 -155349583 + L1MB1 LINE L1 3069 6142 -26 441 273 91 3 chrX 21626162 21626340 -155347800 + MIR SINE MIR 1 248 -14 24 100 0 0 chrX 21627713 21627793 -155346347 + AT_rich Low_complexity Low_complexity 1 80 0 243 0 0 0 chrX 21628505 21628532 -155345608 + (CA)n Simple_repeat Simple_repeat 2 28 0 236 133 0 0 chrX 21629012 21629057 -155345083 - L1MA3 LINE L1 -3 6302 6258 205 266 31 0 chrX 21629961 21630025 -155344115 + (TG)n Simple_repeat Simple_repeat 1 66 0 5593 161 11 6 chrX 21632668 21633838 -155340302 - L1PA16 LINE L1 -1 6165 4993 394 215 0 19 chrX 21633831 21633938 -155340202 - L1 LINE L1 -1251 4895 4791 * 719 170 0 0 chrX 21634489 21634624 -155339516 + L1MA4 LINE L1 6166 6300 0 374 91 0 18 chrX 21635778 21635854 -155338286 - L1PB1 LINE L1 -420 5731 5680 * 2138 126 13 78 chrX 21635851 21636247 -155337893 + L1PB1 LINE L1 5735 6104 -47 * 3856 32 9 0 chrX 21636243 21636704 -155337436 - L1PA4 LINE L1 -262 5892 5428 2414 18 0 0 chrX 21636704 21636985 -155337155 + L1PA4 LINE L1 5870 6152 -3 308 133 12 48 chrX 21636985 21637064 -155337076 + L1PB1 LINE L1 6069 6148 -3 27 62 0 0 chrX 21637623 21637671 -155336469 + AT_rich Low_complexity Low_complexity 1 48 0 1209 226 76 6 chrX 21639742 21640056 -155334084 + MER58B DNA MER1_type 6 341 0 357 125 0 0 chrX 21640165 21640221 -155333919 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1799 161 3 16 chrX 21641089 21641399 -155332741 + AluSx SINE Alu 7 312 0 189 0 0 0 chrX 21641403 21641424 -155332716 + (GA)n Simple_repeat Simple_repeat 2 22 0 201 385 55 69 chrX 21641426 21641644 -155332496 - L2 LINE L2 -21 3251 3037 2443 77 0 3 chrX 21641684 21641996 -155332144 - AluY SINE Alu 0 311 1 336 261 113 11 chrX 21642073 21642191 -155331949 - MER5A DNA MER1_type -54 124 8 1031 241 12 19 chrX 21642386 21642643 -155331497 + L1ME3A LINE L1 5916 6170 0 1741 323 171 17 chrX 21642899 21643991 -155330149 + L2 LINE L2 1715 2974 -340 1065 240 83 63 chrX 21644004 21644558 -155329582 + MER34B LTR ERV1 1 565 0 201 328 17 0 chrX 21644559 21644617 -155329523 + L2 LINE L2 2984 3042 -271 1885 151 0 10 chrX 21644632 21644993 -155329147 + AluSx SINE Alu 5 362 0 357 314 31 31 chrX 21645069 21645228 -155328912 + L2 LINE L2 3152 3310 -3 789 301 80 4 chrX 21645968 21646230 -155327910 + LTR16A LTR ERVL 1 282 -168 1338 273 79 47 chrX 21646236 21646731 -155327409 + REP3 LTR ERV 5 515 -47 566 298 0 0 chrX 21646748 21646889 -155327251 + LTR16A LTR ERVL 283 423 -27 1972 142 4 0 chrX 21646889 21647201 -155326939 + AluSp SINE Alu 1 313 0 275 158 0 0 chrX 21647221 21647259 -155326881 + LTR16A LTR ERVL 413 450 0 1328 188 72 14 chrX 21647549 21647708 -155326432 - AluJo SINE Alu -20 292 109 432 0 0 0 chrX 21647708 21647756 -155326384 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1328 188 72 14 chrX 21647756 21647872 -155326268 - AluJo SINE Alu -203 109 1 2028 92 60 0 chrX 21648589 21648873 -155325267 - AluY SINE Alu -10 301 1 189 159 0 0 chrX 21649538 21649582 -155324558 + (TG)n Simple_repeat Simple_repeat 2 45 0 211 261 174 54 chrX 21649593 21649685 -155324455 + MER91A DNA MER1_type 28 130 -66 313 369 119 12 chrX 21650160 21650328 -155323812 + MER91A DNA MER1_type 1 186 -10 210 258 0 0 chrX 21650531 21650593 -155323547 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 234 250 17 43 chrX 21650593 21650612 -155323528 - L1MA4A LINE L1 -2 6301 6283 1213 187 51 29 chrX 21650612 21650885 -155323255 - L1PB4 LINE L1 -1 6155 5877 308 267 0 0 chrX 21650914 21651004 -155323136 + L1MC4 LINE L1 6614 6703 -1339 286 239 0 22 chrX 21650924 21651016 -155323124 - L1MC4 LINE L1 -1339 6703 6614 * 781 268 150 26 chrX 21651127 21651637 -155322503 + L1ME3A LINE L1 5589 6169 -1 443 303 62 45 chrX 21653496 21653740 -155320400 - MIR SINE MIR 0 262 15 351 0 0 0 chrX 21653992 21654031 -155320109 + (TG)n Simple_repeat Simple_repeat 1 39 0 182 302 0 0 chrX 21654248 21654301 -155319839 - L2 LINE L2 -213 3059 3007 429 265 139 6 chrX 21654374 21654540 -155319600 - L1ME1 LINE L1 -2 6164 5977 3945 143 5 9 chrX 21654600 21655245 -155318895 - L1PA15 LINE L1 -3 6162 5521 279 0 0 0 chrX 21658045 21658076 -155316064 + (T)n Simple_repeat Simple_repeat 1 31 0 1119 131 7 6 chrX 21658547 21658743 -155315397 - L1M2 LINE L1 -513 5784 5587 216 238 188 12 chrX 21660408 21660488 -155313652 - MIR3 SINE MIR -23 185 92 944 57 0 0 chrX 21661226 21661350 -155312790 - L1PA4 LINE L1 -1 6154 6031 427 246 59 25 chrX 21661519 21661637 -155312503 - MIR SINE MIR -117 145 24 3237 70 0 16 chrX 21662398 21662840 -155311300 - L1PA8 LINE L1 -3 6169 5735 225 242 8 17 chrX 21663437 21663557 -155310583 + (TA)n Simple_repeat Simple_repeat 1 119 0 1894 26 0 0 chrX 21664409 21664636 -155309504 - L1PA4 LINE L1 -594 5561 5335 4725 46 5 0 chrX 21664636 21665222 -155308918 + L1PA4 LINE L1 5564 6155 0 267 31 0 0 chrX 21665693 21665725 -155308415 + (TA)n Simple_repeat Simple_repeat 2 33 0 336 276 16 49 chrX 21666548 21666671 -155307469 + MIR SINE MIR 8 126 -136 1604 169 47 23 chrX 21667083 21667384 -155306756 + MSTC LTR MaLR 1 308 -120 596 167 0 0 chrX 21667383 21667473 -155306667 + 5S rRNA rRNA 1 90 -31 * 948 118 0 0 chrX 21667470 21667605 -155306535 + MSTC LTR MaLR 293 427 -1 27 49 0 0 chrX 21667852 21667893 -155306247 + AT_rich Low_complexity Low_complexity 1 41 0 313 321 95 23 chrX 21669567 21669769 -155304371 - MIR SINE MIR -2 260 36 884 251 143 101 chrX 21669801 21670495 -155303645 - MER20B DNA MER1_type -5 778 56 223 268 72 31 chrX 21670537 21670634 -155303506 + MIR SINE MIR 160 260 -2 248 261 45 34 chrX 21671818 21671906 -155302234 + MIR3 SINE MIR 110 198 -10 1516 226 69 67 chrX 21672593 21672657 -155301483 - MLT2B1 LTR ERVL -8 512 450 384 71 0 0 chrX 21672657 21672713 -155301427 + (TG)n Simple_repeat Simple_repeat 1 56 0 1516 226 69 67 chrX 21672713 21673158 -155300982 - MLT2B1 LTR ERVL -70 450 2 348 275 67 20 chrX 21673530 21673679 -155300461 + L1ME4a LINE L1 5713 5868 -253 225 271 42 88 chrX 21674174 21674436 -155299704 + L1ME4a LINE L1 5870 6119 -2 191 250 0 0 chrX 21674871 21674911 -155299229 - MIR3 SINE MIR -1 207 168 196 378 51 0 chrX 21677372 21677470 -155296670 - L2 LINE L2 -18 3254 3152 948 207 6 6 chrX 21677524 21677693 -155296447 - MER5A DNA MER1_type 0 189 21 282 326 45 0 chrX 21678288 21678377 -155295763 - MIR SINE MIR -66 142 50 282 252 282 0 chrX 21678432 21678563 -155295577 - HsTC2 DNA Tc2 -1710 188 21 1173 137 5 9 chrX 21678563 21678775 -155295365 + L1MA4 LINE L1 6084 6294 -6 1838 300 130 30 chrX 21680161 21680554 -155293586 + L2 LINE L2 1800 2152 -1161 1875 154 0 23 chrX 21680554 21680859 -155293281 - AluJb SINE Alu -14 298 1 1838 300 130 30 chrX 21680859 21681836 -155292304 + L2 LINE L2 2152 3312 -1 323 252 12 54 chrX 21681856 21681996 -155292144 + MER34B LTR ERV1 31 245 -406 310 264 121 23 chrX 21682192 21682366 -155291774 + MER34 LTR ERV1 352 542 0 737 253 6 0 chrX 21683855 21684013 -155290127 + MER5A DNA MER1_type 31 189 0 1916 142 0 82 chrX 21684021 21684388 -155289752 - MER1B DNA MER1_type 0 337 1 1482 140 20 16 chrX 21684413 21684663 -155289477 + AluSx SINE Alu 50 300 -12 354 358 54 0 chrX 21685237 21685385 -155288755 + L2 LINE L2 3116 3271 -1 783 213 31 0 chrX 21685567 21685727 -155288413 + MER5A DNA MER1_type 1 165 -24 286 304 40 61 chrX 21685599 21685747 -155288393 - MER5A DNA MER1_type -23 166 22 * 286 237 31 41 chrX 21685778 21685875 -155288265 - MER5A DNA MER1_type -56 133 38 339 25 0 0 chrX 21686937 21686977 -155287163 + (TA)n Simple_repeat Simple_repeat 2 41 0 247 294 39 106 chrX 21687523 21687703 -155286437 - MER5A DNA MER1_type 0 189 22 309 304 40 32 chrX 21687740 21687865 -155286275 - MER5A DNA MER1_type -63 126 1 190 217 43 72 chrX 21687957 21688026 -155286114 + L2 LINE L2 3205 3271 -1 423 0 0 0 chrX 21688512 21688559 -155285581 + (TA)n Simple_repeat Simple_repeat 1 47 0 745 173 98 17 chrX 21688621 21688794 -155285346 - MER5A DNA MER1_type -2 187 1 182 379 131 20 chrX 21688956 21689109 -155285031 + L2 LINE L2 3092 3261 -11 215 301 0 41 chrX 21689353 21689426 -155284714 - L2 LINE L2 0 3313 3244 623 346 29 8 chrX 21689453 21689696 -155284444 - MIR SINE MIR -13 249 2 961 324 106 50 chrX 21689879 21690982 -155283158 - L2 LINE L2 0 3313 2140 274 304 113 9 chrX 21691053 21691168 -155282972 - MIR3 SINE MIR -50 158 32 668 205 26 0 chrX 21691192 21691309 -155282831 + MER5A DNA MER1_type 7 126 -63 3339 150 77 11 chrX 21692371 21692991 -155281149 + MER67B LTR ERV1 1 661 0 21 0 0 0 chrX 21693773 21693794 -155280346 + AT_rich Low_complexity Low_complexity 1 21 0 183 100 0 0 chrX 21694992 21695022 -155279118 + (TA)n Simple_repeat Simple_repeat 2 31 0 390 42 0 0 chrX 21695023 21695071 -155279069 + (GA)n Simple_repeat Simple_repeat 1 48 0 709 311 102 38 chrX 21695777 21696217 -155277923 + L2 LINE L2 2700 3175 -138 2210 96 0 0 chrX 21696217 21696530 -155277610 + AluSx SINE Alu 2 314 0 709 311 102 38 chrX 21696530 21696674 -155277466 + L2 LINE L2 3175 3308 -5 252 357 36 18 chrX 21696672 21696784 -155277356 - MIR SINE MIR -86 176 63 * 190 255 174 31 chrX 21697143 21697241 -155276899 + MIR SINE MIR 32 143 -65 23 68 0 0 chrX 21697431 21697475 -155276665 + AT_rich Low_complexity Low_complexity 1 44 0 311 296 23 73 chrX 21697673 21697856 -155276284 - MIR SINE MIR -51 157 21 1538 289 80 34 chrX 21698246 21698296 -155275844 + L2 LINE L2 2019 2065 -1248 339 25 0 0 chrX 21698296 21698336 -155275804 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 2040 118 4 7 chrX 21698338 21698618 -155275522 - AluSg SINE Alu -31 279 1 1538 289 80 34 chrX 21698618 21699633 -155274507 + L2 LINE L2 2065 3308 -5 1601 161 47 7 chrX 21700766 21701040 -155273100 + AluJb SINE Alu 5 289 -23 378 0 0 0 chrX 21701866 21701908 -155272232 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1865 30 0 13 chrX 21702103 21702334 -155271806 + L1PA3 LINE L1 5928 6155 0 419 123 14 0 chrX 21702924 21702997 -155271143 - L1PA16 LINE L1 -2 6164 6091 321 195 13 39 chrX 21703475 21703552 -155270588 - MER20 DNA MER1_type -144 75 1 28 0 0 0 chrX 21703842 21703870 -155270270 + AT_rich Low_complexity Low_complexity 1 28 0 411 21 0 0 chrX 21705739 21705787 -155268353 + (TG)n Simple_repeat Simple_repeat 2 49 0 2298 82 0 0 chrX 21706062 21706343 -155267797 - AluSc SINE Alu -28 281 1 904 221 22 49 chrX 21707088 21707314 -155266826 + MER58A DNA MER1_type 4 223 -1 821 137 143 28 chrX 21707839 21708021 -155266119 + LTR12 LTR ERV1 1 203 -511 364 260 10 0 chrX 21708090 21708190 -155265950 + LTR30 LTR ERV1 524 624 -98 734 173 23 15 chrX 21708190 21708323 -155265817 + LTR12 LTR ERV1 359 492 -222 446 355 158 8 chrX 21708651 21709051 -155265089 + L2 LINE L2 2850 3309 -4 393 326 81 92 chrX 21709448 21710165 -155263975 + L2 LINE L2 2257 2965 -349 246 81 0 0 chrX 21710282 21710319 -155263821 + (TC)n Simple_repeat Simple_repeat 1 37 0 257 261 9 117 chrX 21710373 21710484 -155263656 + L2 LINE L2 3172 3270 -2 1622 210 26 47 chrX 21711009 21711499 -155262641 - L1MA9 LINE L1 -38 6274 5795 306 0 0 0 chrX 21711503 21711537 -155262603 + (TG)n Simple_repeat Simple_repeat 2 35 0 411 21 0 0 chrX 21711613 21711661 -155262479 + (TC)n Simple_repeat Simple_repeat 1 48 0 22 35 0 0 chrX 21711718 21711747 -155262393 + AT_rich Low_complexity Low_complexity 1 29 0 2262 132 8 48 chrX 21712309 21712688 -155261452 + THE1B LTR MaLR 1 364 0 2254 116 22 24 chrX 21713268 21713639 -155260501 - THE1C LTR MaLR -2 373 4 192 298 60 86 chrX 21714202 21714353 -155259787 + MIR SINE MIR 88 234 -28 198 282 24 35 chrX 21714546 21714631 -155259509 - MIR SINE MIR -144 118 35 756 251 29 18 chrX 21715362 21715668 -155258472 + L1MD3 LINE L1 6050 7982 -13 2323 103 17 3 chrX 21716434 21716784 -155257356 - THE1A LTR MaLR 0 355 1 22 35 0 0 chrX 21716985 21717014 -155257126 + AT_rich Low_complexity Low_complexity 1 29 0 2099 122 0 34 chrX 21717014 21717335 -155256805 + AluSx SINE Alu 1 310 -2 24 32 0 0 chrX 21717486 21717517 -155256623 + AT_rich Low_complexity Low_complexity 1 31 0 351 0 0 0 chrX 21717544 21717583 -155256557 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chrX 21717629 21717651 -155256489 + AT_rich Low_complexity Low_complexity 1 22 0 360 262 43 35 chrX 21717781 21717922 -155256218 - L2 LINE L2 0 3313 3172 212 318 9 73 chrX 21718944 21719054 -155255086 + L2 LINE L2 3206 3308 -5 2425 48 0 26 chrX 21719400 21719709 -155254431 - AluY SINE Alu -10 301 1 2089 106 0 3 chrX 21720610 21720892 -155253248 + AluSq SINE Alu 1 281 -32 198 71 0 0 chrX 21720892 21720920 -155253220 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 241 244 24 24 chrX 21721822 21721904 -155252236 + MIR SINE MIR 131 212 -50 189 119 68 0 chrX 21722117 21722176 -155251964 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 260 131 0 33 chrX 21722182 21722243 -155251897 + (GGGAGA)n Simple_repeat Simple_repeat 2 60 0 237 159 0 0 chrX 21722253 21722297 -155251843 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 485 259 171 0 chrX 21722333 21722491 -155251649 + MIR SINE MIR 78 262 0 420 314 108 5 chrX 21722575 21722760 -155251380 - MIR SINE MIR 0 262 59 265 222 11 22 chrX 21722955 21723045 -155251095 - L1MC5 LINE L1 -76 7885 7797 396 330 80 35 chrX 21723639 21723730 -155250410 + MIR SINE MIR 7 92 -170 2418 46 13 3 chrX 21723730 21724033 -155250107 - AluY SINE Alu -5 306 1 396 330 80 35 chrX 21724033 21724141 -155249999 + MIR SINE MIR 92 215 -47 458 320 19 0 chrX 21725199 21725355 -155248785 - MIR SINE MIR 0 262 104 432 331 36 27 chrX 21725603 21726047 -155248093 - LTR16C LTR ERVL 0 491 1 199 261 29 14 chrX 21726089 21726158 -155247982 + MIR SINE MIR 174 243 -19 229 151 132 0 chrX 21726169 21726222 -155247918 + MIR SINE MIR 172 231 -31 24 67 0 0 chrX 21727020 21727065 -155247075 + AT_rich Low_complexity Low_complexity 1 45 0 28 29 0 0 chrX 21730189 21730224 -155243916 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chrX 21730917 21730938 -155243202 + AT_rich Low_complexity Low_complexity 1 21 0 248 235 212 0 chrX 21731597 21731682 -155242458 + L2 LINE L2 3197 3299 -14 396 0 0 0 chrX 21731830 21731874 -155242266 + (CA)n Simple_repeat Simple_repeat 2 45 0 2283 99 0 0 chrX 21731958 21732250 -155241890 + AluSc SINE Alu 3 294 -15 345 47 0 0 chrX 21732488 21732531 -155241609 + (CA)n Simple_repeat Simple_repeat 2 44 0 424 288 123 6 chrX 21733913 21734083 -155240057 + MIR SINE MIR 22 211 -51 768 196 0 0 chrX 21734109 21734242 -155239898 + FLAM_A SINE Alu 1 133 0 384 223 85 0 chrX 21734305 21734399 -155239741 - MER5A DNA MER1_type -77 112 11 180 374 48 41 chrX 21734495 21734642 -155239498 - L2 LINE L2 -4 3268 3121 1497 231 65 18 chrX 21734651 21735097 -155239043 + MER110A LTR ERV1 2 468 0 595 241 146 6 chrX 21735674 21735832 -155238308 + MER5A DNA MER1_type 9 188 -1 324 253 0 40 chrX 21735856 21735931 -155238209 - L2 LINE L2 -556 2758 2687 2070 118 0 40 chrX 21736067 21736388 -155237752 - AluSx SINE Alu 0 312 5 324 394 97 5 chrX 21737236 21737452 -155236688 + MIR SINE MIR 21 256 -6 333 258 55 10 chrX 21737700 21737836 -155236304 - MIR SINE MIR -7 201 48 1304 75 0 0 chrX 21737878 21738051 -155236089 + L1PA8 LINE L1 6000 6172 0 1756 99 107 33 chrX 21738448 21738720 -155235420 - AluSp SINE Alu -4 309 18 1149 300 77 11 chrX 21738775 21739241 -155234899 + L2 LINE L2 2201 2697 -617 1142 225 51 33 chrX 21739260 21739593 -155234547 + L1MD2 LINE L1 5911 6249 -110 638 219 36 42 chrX 21739582 21739774 -155234366 + L1MD2 LINE L1 6159 6349 -10 * 504 280 32 0 chrX 21739798 21739923 -155234217 + L2 LINE L2 2926 3054 -259 409 246 26 0 chrX 21739929 21740036 -155234104 + AluJ/FLAM SINE Alu 1 88 -214 10240 119 34 5 chrX 21740036 21741564 -155232576 + THE1C-int LTR MaLR 8 1580 0 2212 119 13 46 chrX 21741564 21741952 -155232188 + THE1C LTR MaLR 1 375 0 628 261 94 55 chrX 21741952 21742030 -155232110 + L2 LINE L2 2995 3068 -245 1626 195 3 13 chrX 21742030 21742343 -155231797 + AluJo SINE Alu 1 310 -2 628 261 94 55 chrX 21742343 21742571 -155231569 + L2 LINE L2 3068 3313 0 420 263 8 30 chrX 21743235 21743368 -155230772 + MIR SINE MIR 67 196 -66 180 97 0 0 chrX 21744398 21744429 -155229711 + (A)n Simple_repeat Simple_repeat 1 31 0 2086 126 0 3 chrX 21746046 21746332 -155227808 + AluSx SINE Alu 1 285 -27 30 0 0 0 chrX 21746332 21746362 -155227778 + AT_rich Low_complexity Low_complexity 1 30 0 241 254 56 42 chrX 21746391 21746462 -155227678 + LTR33A LTR ERVL 347 418 -105 180 247 226 32 chrX 21748655 21748748 -155225392 - MIR SINE MIR -120 142 32 345 82 0 0 chrX 21749183 21749232 -155224908 + (TA)n Simple_repeat Simple_repeat 1 49 0 409 270 43 31 chrX 21749552 21749715 -155224425 - Charlie2 DNA MER1_type 0 2862 2698 2145 233 61 5 chrX 21749720 21750324 -155223816 - Charlie2 DNA MER1_type -360 2502 1865 710 211 51 120 chrX 21750342 21750617 -155223523 - Charlie2 DNA MER1_type -2526 256 1 280 286 66 0 chrX 21750907 21750998 -155223142 + MIR SINE MIR 35 131 -131 279 333 10 10 chrX 21750998 21751094 -155223046 - MER5B DNA MER1_type 0 178 83 345 350 51 45 chrX 21753766 21754080 -155220060 - L1 LINE L1 -835 5311 4996 227 345 9 0 chrX 21754197 21754313 -155219827 - L1 LINE L1 -1310 4836 4720 763 209 0 13 chrX 21755041 21755194 -155218946 + MER58B DNA MER1_type 176 326 -15 321 353 18 50 chrX 21755229 21755447 -155218693 - MIR SINE MIR -26 236 26 594 41 0 0 chrX 21755514 21755587 -155218553 - L1PA5 LINE L1 -5 6149 6077 892 212 86 0 chrX 21755661 21755859 -155218281 + MER20 DNA MER1_type 1 215 -4 345 316 53 8 chrX 21755944 21756077 -155218063 + L2 LINE L2 3175 3313 0 207 0 0 0 chrX 21756180 21756203 -155217937 + (TA)n Simple_repeat Simple_repeat 1 23 0 760 337 67 22 chrX 21756578 21756982 -155217158 - L3 LINE CR1 -3 1574 1153 319 320 39 0 chrX 21757112 21757215 -155216925 - L2 LINE L2 -10 3303 3197 1705 178 33 6 chrX 21757218 21757549 -155216591 + MER2 DNA MER2_type 1 340 -5 2471 138 31 0 chrX 21758501 21758915 -155215225 + MSTA LTR MaLR 2 428 0 1149 222 61 33 chrX 21759812 21760173 -155213967 - L1ME2 LINE L1 -1 6163 5793 561 340 115 37 chrX 21760288 21761046 -155213094 - L2 LINE L2 -340 2974 2158 2474 55 0 7 chrX 21762322 21762631 -155211509 + AluY SINE Alu 1 307 -4 1508 115 0 21 chrX 21762794 21763037 -155211103 - L1MA2 LINE L1 0 6304 6067 22 56 0 0 chrX 21763295 21763331 -155210809 + AT_rich Low_complexity Low_complexity 1 36 0 1308 134 79 12 chrX 21763339 21763593 -155210547 - L1MA8 LINE L1 -10 6281 6011 778 196 86 121 chrX 21763903 21764356 -155209784 + LTR37B LTR ERV1 6 442 -26 1625 189 27 0 chrX 21765215 21765385 -155208755 - AluSx SINE Alu -7 305 122 207 0 0 0 chrX 21765385 21765408 -155208732 + (TG)n Simple_repeat Simple_repeat 2 24 0 1625 189 27 0 chrX 21765408 21765534 -155208606 - AluSx SINE Alu -190 122 1 736 232 131 0 chrX 21766187 21766446 -155207694 - MER33 DNA MER1_type -31 293 1 1704 154 67 26 chrX 21766638 21766950 -155207190 - MER44D DNA MER2_type 0 609 15 267 257 43 14 chrX 21767611 21767681 -155206459 + L2 LINE L2 3234 3305 -8 2335 92 0 0 chrX 21767925 21768228 -155205912 - AluSc SINE Alu -6 303 1 25 0 0 0 chrX 21769497 21769522 -155204618 + AT_rich Low_complexity Low_complexity 1 25 0 210 353 0 15 chrX 21769781 21769849 -155204291 + MIR SINE MIR 49 115 -147 1843 142 153 24 chrX 21770182 21770555 -155203585 - MSTB LTR MaLR 0 426 6 414 0 0 0 chrX 21770555 21770601 -155203539 + (TC)n Simple_repeat Simple_repeat 1 46 0 393 22 0 0 chrX 21770600 21770646 -155203494 + (CA)n Simple_repeat Simple_repeat 1 46 0 * 306 209 132 44 chrX 21771216 21771307 -155202833 + L2 LINE L2 3171 3269 -3 240 111 0 0 chrX 21771956 21772001 -155202139 + (ATG)n Simple_repeat Simple_repeat 3 47 0 1175 214 165 26 chrX 21772740 21773086 -155201054 + MSTD LTR MaLR 1 394 -2 293 276 86 52 chrX 21774273 21774389 -155199751 + L2 LINE L2 3146 3265 -7 311 287 83 120 chrX 21774609 21775052 -155199088 - L2 LINE L2 0 3313 2887 274 229 136 34 chrX 21776298 21776416 -155197724 + LTR16C LTR ERVL 1 130 -361 415 324 183 14 chrX 21777993 21778206 -155195934 - MIR SINE MIR -11 251 3 2051 118 21 0 chrX 21779283 21779572 -155194568 + AluSq SINE Alu 1 295 -18 547 198 29 150 chrX 21779706 21779913 -155194227 + L1MEc LINE L1 168 349 -6214 3776 217 36 19 chrX 21779924 21780863 -155193277 + L1MEc LINE L1 466 1420 -5143 305 298 25 0 chrX 21780876 21780997 -155193143 + L1MEc LINE L1 1317 1440 -4944 303 306 12 0 chrX 21780999 21781084 -155193056 + LTR16A LTR ERVL 365 450 0 21 36 0 0 chrX 21781188 21781216 -155192924 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 21782969 21782990 -155191150 + AT_rich Low_complexity Low_complexity 1 21 0 1145 169 16 16 chrX 21783135 21783383 -155190757 + L1MA6 LINE L1 6050 6297 -3 279 189 27 0 chrX 21783383 21783457 -155190683 - L1MC5 LINE L1 -272 7689 7614 557 198 23 119 chrX 21783729 21783906 -155190234 + MER5B DNA MER1_type 19 178 0 483 282 64 50 chrX 21784206 21784426 -155189714 - MIR SINE MIR -6 256 34 26 0 0 0 chrX 21785103 21785129 -155189011 + AT_rich Low_complexity Low_complexity 1 26 0 275 324 0 0 chrX 21785601 21785675 -155188465 + MER115 DNA AcHobo 369 442 -251 23 0 0 0 chrX 21786230 21786253 -155187887 + AT_rich Low_complexity Low_complexity 1 23 0 215 278 0 19 chrX 21787056 21787110 -155187030 + MIR SINE MIR 154 206 -56 22 35 0 0 chrX 21787126 21787155 -155186985 + AT_rich Low_complexity Low_complexity 1 29 0 3973 132 4 45 chrX 21787159 21787842 -155186298 - L1PB3 LINE L1 -9 6145 5491 1339 214 21 0 chrX 21787842 21788173 -155185967 + L1 LINE L1 2962 3299 -2847 1094 220 101 46 chrX 21788686 21789032 -155185108 - MLT1A1 LTR MaLR 0 365 1 1049 272 23 66 chrX 21789033 21789470 -155184670 - L1ME LINE L1 -406 5764 5347 537 303 26 24 chrX 21789610 21789990 -155184150 - L1ME LINE L1 -804 5342 4962 33 0 0 0 chrX 21790154 21790187 -155183953 + AT_rich Low_complexity Low_complexity 1 33 0 284 335 155 42 chrX 21790695 21790747 -155183393 + L2 LINE L2 2172 2217 -1097 707 289 28 5 chrX 21790747 21790965 -155183175 - MER58A DNA MER1_type 0 224 2 284 335 155 42 chrX 21790965 21791113 -155183027 + L2 LINE L2 2217 2347 -967 2428 132 43 14 chrX 21791113 21791529 -155182611 + MSTA LTR MaLR 1 428 0 284 335 155 42 chrX 21791529 21791688 -155182452 + L2 LINE L2 2347 2573 -741 347 401 29 17 chrX 21792020 21792192 -155181948 + L2 LINE L2 3099 3272 0 271 317 42 17 chrX 21792228 21792348 -155181792 + MIR SINE MIR 66 188 -74 378 61 0 0 chrX 21792855 21792904 -155181236 + (TA)n Simple_repeat Simple_repeat 1 49 0 2148 154 11 5 chrX 21792939 21793309 -155180831 + L1PB4 LINE L1 5785 6156 0 340 295 23 23 chrX 21794473 21794602 -155179538 - MIR SINE MIR -30 232 104 1081 176 33 108 chrX 21795179 21795270 -155178870 - L1MA10 LINE L1 0 6334 6238 405 0 0 0 chrX 21795270 21795315 -155178825 + (TA)n Simple_repeat Simple_repeat 2 46 0 1081 176 33 108 chrX 21795315 21795558 -155178582 - L1MA10 LINE L1 -96 6238 6025 2359 52 0 3 chrX 21795813 21796133 -155178007 - AluY SINE Alu 0 319 1 500 301 107 15 chrX 21796227 21796433 -155177707 + MIR SINE MIR 21 245 -17 238 397 33 8 chrX 21798624 21798745 -155175395 - L2 LINE L2 0 3272 3149 367 310 54 23 chrX 21798779 21798908 -155175232 + LTR16C LTR ERVL 1 133 -358 1969 130 10 0 chrX 21799177 21799518 -155174622 - AluSp SINE Alu 0 313 1 405 250 152 0 chrX 21800009 21800121 -155174019 - MER5B DNA MER1_type -1 177 49 227 333 162 0 chrX 21800433 21800544 -155173596 - MIR SINE MIR -86 176 48 3387 136 4 9 chrX 21800564 21801094 -155173046 - MER1A DNA MER1_type 0 527 1 259 279 136 15 chrX 21801872 21802051 -155172089 - L1ME LINE L1 -536 5634 5411 2149 104 84 6 chrX 21802051 21802386 -155171754 + THE1B LTR MaLR 2 362 -2 259 279 136 15 chrX 21802386 21802471 -155171669 - L1ME LINE L1 -759 5411 5338 458 265 124 53 chrX 21802491 21802846 -155171294 - L1ME LINE L1 -823 5323 4944 563 299 71 0 chrX 21802918 21803115 -155171025 - HAL1 LINE L1 -547 1960 1750 795 301 33 64 chrX 21803124 21803543 -155170597 + MLT1I LTR MaLR 4 409 0 234 259 144 36 chrX 21803576 21803715 -155170425 - HAL1 LINE L1 -760 1747 1594 1209 242 102 71 chrX 21803715 21804253 -155169887 - MLT1F1 LTR MaLR 0 567 13 1367 231 84 109 chrX 21804284 21804607 -155169533 - HAL1 LINE L1 -937 1570 1241 667 277 79 0 chrX 21804607 21804809 -155169331 - MER20 DNA MER1_type 0 219 2 1367 231 84 109 chrX 21804809 21804935 -155169205 - HAL1 LINE L1 -1266 1241 1113 1823 153 0 19 chrX 21804935 21805256 -155168884 - L1MC1 LINE L1 -1 6332 6018 498 228 0 0 chrX 21805258 21805372 -155168768 + L1PB4 LINE L1 6041 6154 -2 1367 231 84 109 chrX 21805372 21805818 -155168322 - HAL1 LINE L1 -1395 1112 693 1874 171 53 4 chrX 21805818 21806164 -155167976 + MLT1A1 LTR MaLR 1 426 -2 563 319 55 44 chrX 21806237 21806601 -155167539 - HAL1 LINE L1 -1902 605 238 392 177 8 31 chrX 21808503 21808633 -155165507 + GA-rich Low_complexity Low_complexity 4 130 0 243 146 0 0 chrX 21808643 21808684 -155165456 + (CAGG)n Simple_repeat Simple_repeat 1 41 0 957 208 140 0 chrX 21809081 21809346 -155164794 + MER63 DNA MER1_type 717 1018 -44 17529 28 0 0 chrX 21809544 21812399 -155161741 - L1PA2 LINE L1 -1 6154 3304 215 257 191 57 chrX 21812562 21812667 -155161473 + MER5B DNA MER1_type 60 178 0 369 238 29 91 chrX 21812716 21812926 -155161214 - L1MC5 LINE L1 -48 7913 7717 253 318 95 91 chrX 21813181 21813477 -155160663 + L2 LINE L2 2974 3270 -2 484 248 62 16 chrX 21815126 21815255 -155158885 - MIR SINE MIR -111 151 17 579 316 197 44 chrX 21816333 21816447 -155157693 + L2 LINE L2 2009 2104 -1209 2630 55 3 6 chrX 21816447 21816792 -155157348 + L1PA7 LINE L1 5811 6154 0 579 316 197 44 chrX 21816792 21817276 -155156864 + L2 LINE L2 2104 2512 -801 1438 182 0 84 chrX 21817276 21817611 -155156529 + AluJo SINE Alu 2 308 -4 579 316 197 44 chrX 21817611 21818072 -155156068 + L2 LINE L2 2512 3245 -68 1029 119 0 0 chrX 21818171 21818464 -155155676 + (TA)n Simple_repeat Simple_repeat 2 294 0 382 260 6 0 chrX 21818466 21818578 -155155562 + L1MC4 LINE L1 6613 6705 -1337 2305 99 0 0 chrX 21819213 21819507 -155154633 - AluSg SINE Alu -14 296 3 2156 126 0 0 chrX 21819627 21819929 -155154211 - AluSx SINE Alu -10 302 1 2136 173 154 21 chrX 21820417 21820944 -155153196 - L1MB3 LINE L1 -1 6182 5586 948 181 0 44 chrX 21820954 21821136 -155153004 + MER58B DNA MER1_type 168 341 0 5765 100 6 36 chrX 21821629 21822535 -155151605 - L1P LINE L1 -3553 2593 1716 7338 110 6 0 chrX 21822538 21824411 -155149729 + L1PA7 LINE L1 4276 6152 -2 24 0 0 0 chrX 21825133 21825157 -155148983 + AT_rich Low_complexity Low_complexity 1 24 0 350 251 90 33 chrX 21825811 21825986 -155148154 + MLT1J2 LTR MaLR 246 432 -14 31 0 0 0 chrX 21827498 21827529 -155146611 + AT_rich Low_complexity Low_complexity 1 31 0 385 239 15 45 chrX 21827819 21827953 -155146187 + L1ME1 LINE L1 5872 6001 -165 638 203 14 0 chrX 21827972 21828120 -155146020 + L1MA10 LINE L1 6185 6334 0 882 341 36 30 chrX 21828214 21828654 -155145486 + LTR16A LTR ERVL 2 444 -6 25 0 0 0 chrX 21829449 21829474 -155144666 + AT_rich Low_complexity Low_complexity 1 25 0 2478 115 13 11 chrX 21829610 21829984 -155144156 + THE1C LTR MaLR 1 375 0 9785 109 28 63 chrX 21829984 21831622 -155142518 + THE1C-int LTR MaLR 1 1580 0 2576 104 13 13 chrX 21831622 21831997 -155142143 + THE1C LTR MaLR 1 375 0 1377 278 23 45 chrX 21833781 21834252 -155139888 + LTR16C LTR ERVL 31 491 0 4047 159 20 20 chrX 21834446 21835157 -155138983 + MER50 LTR ERV1 1 711 -23 310 364 21 7 chrX 21836144 21836284 -155137856 + MLT1J LTR MaLR 100 241 -308 222 118 0 0 chrX 21837212 21837246 -155136894 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 281 268 235 20 chrX 21838191 21838344 -155135796 + MIR SINE MIR 48 233 -29 249 33 0 0 chrX 21838866 21838896 -155135244 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 565 239 60 0 chrX 21838899 21839033 -155135107 + FLAM_A SINE Alu 1 142 0 753 246 107 48 chrX 21839062 21839351 -155134789 + MLT1J LTR MaLR 9 314 -197 366 304 9 0 chrX 21839413 21839528 -155134612 + MLT1J LTR MaLR 394 509 -2 21 0 0 0 chrX 21841140 21841161 -155132979 + AT_rich Low_complexity Low_complexity 1 21 0 3920 223 10 12 chrX 21841380 21842199 -155131941 + L1MA2 LINE L1 12 828 -6737 1961 158 0 0 chrX 21842228 21842532 -155131608 + AluSx SINE Alu 3 306 -6 185 94 31 0 chrX 21842537 21842569 -155131571 + A-rich Low_complexity Low_complexity 3 35 0 5671 206 19 30 chrX 21842571 21843963 -155130177 + L1MA2 LINE L1 3598 4973 -2592 1679 25 0 0 chrX 21844017 21844259 -155129881 + L1P1 LINE L1 5190 5431 -724 * 6760 128 17 5 chrX 21844249 21845541 -155128599 + L1MA2 LINE L1 6405 7713 -10 586 127 0 66 chrX 21845595 21845776 -155128364 + (TA)n Simple_repeat Simple_repeat 2 170 0 821 246 70 18 chrX 21847023 21847307 -155126833 - L1ME3A LINE L1 -9 6161 5863 287 349 55 0 chrX 21848344 21848453 -155125687 + MIR3 SINE MIR 73 187 -21 352 286 27 9 chrX 21848501 21848613 -155125527 + MLT1I LTR MaLR 20 133 -276 249 307 35 44 chrX 21848790 21848904 -155125236 + MLT1J LTR MaLR 421 533 -16 966 261 9 0 chrX 21849250 21849472 -155124668 + MER58A DNA MER1_type 1 224 0 672 308 42 8 chrX 21850114 21850351 -155123789 - MIR SINE MIR -3 259 15 679 203 47 14 chrX 21851009 21851157 -155122983 - FRAM SINE Alu -15 161 9 1976 122 4 0 chrX 21851283 21851584 -155122556 - AluSx SINE Alu 0 305 4 261 306 126 9 chrX 21851672 21851783 -155122357 - L2 LINE L2 -23 3290 3167 190 289 0 19 chrX 21851955 21852007 -155122133 - L2 LINE L2 -226 3046 2996 2141 263 138 40 chrX 21853435 21854269 -155119871 + L2 LINE L2 1897 2812 -502 4871 86 43 34 chrX 21854269 21855004 -155119136 + MER41B-int LTR ERV1 5205 5946 0 3525 117 13 9 chrX 21855004 21855550 -155118590 + MER41B LTR ERV1 1 548 -87 787 330 119 25 chrX 21855555 21856052 -155118088 + L2 LINE L2 2771 3313 0 563 232 84 71 chrX 21856804 21857101 -155117039 - L1MC5 LINE L1 -50 7911 7611 260 272 60 86 chrX 21857132 21857400 -155116740 - L2 LINE L2 -793 2521 2261 2111 59 0 26 chrX 21857886 21858159 -155115981 - AluY SINE Alu -8 303 38 809 114 9 0 chrX 21859306 21859420 -155114720 + L1PA16 LINE L1 6033 6147 -19 211 194 0 0 chrX 21860002 21860038 -155114102 + (TG)n Simple_repeat Simple_repeat 2 37 0 2144 104 3 0 chrX 21861699 21861987 -155112153 + AluSq SINE Alu 1 289 -24 1903 283 66 37 chrX 21862771 21862825 -155111315 - L2 LINE L2 0 3313 3262 446 0 19 0 chrX 21862825 21862879 -155111261 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2087 93 4 4 chrX 21862881 21863161 -155110979 - AluSg SINE Alu -30 280 1 1903 283 66 37 chrX 21863161 21864170 -155109970 - L2 LINE L2 -51 3262 2224 712 305 61 4 chrX 21865172 21865418 -155108722 + MIR SINE MIR 1 260 -2 249 119 0 0 chrX 21866813 21866855 -155107285 + (A)n Simple_repeat Simple_repeat 1 42 0 1748 173 106 3 chrX 21867679 21868008 -155106132 + MER47A DNA MER2_type 1 363 -3 201 301 41 68 chrX 21868358 21868504 -155105636 - MIR SINE MIR -37 225 84 331 308 11 0 chrX 21868895 21868986 -155105154 - L2 LINE L2 0 3313 3222 1178 285 98 34 chrX 21871098 21871856 -155102284 + L2 LINE L2 2513 3313 0 202 235 0 19 chrX 21872211 21872321 -155101819 + CT-rich Low_complexity Low_complexity 1 107 0 424 280 42 14 chrX 21872321 21872464 -155101676 - L1M4 LINE L1 -1984 4162 4016 616 342 112 14 chrX 21872707 21873128 -155101012 - LTR16C LTR ERVL 0 491 30 207 100 0 0 chrX 21873667 21873697 -155100443 + (TA)n Simple_repeat Simple_repeat 2 31 0 14444 91 34 0 chrX 21878217 21881119 -155093021 + L1PA7 LINE L1 3187 6154 0 309 177 135 21 chrX 21881460 21881556 -155092584 - L1MA1 LINE L1 -312 5990 5884 222 220 20 0 chrX 21884974 21885024 -155089116 + L2 LINE L2 3263 3313 0 277 259 59 0 chrX 21885386 21885471 -155088669 - MER103 DNA DNA -59 107 18 809 214 39 34 chrX 21885946 21886152 -155087988 - MER3 DNA MER1_type -1 208 2 180 0 0 0 chrX 21887255 21887275 -155086865 + (CAA)n Simple_repeat Simple_repeat 2 21 0 647 275 42 108 chrX 21887381 21887879 -155086261 + HAL1 LINE L1 903 1346 -1161 1494 188 7 14 chrX 21887879 21888189 -155085951 + AluJo SINE Alu 9 316 0 647 275 42 108 chrX 21888189 21888377 -155085763 + HAL1 LINE L1 1346 1545 -962 1829 186 21 3 chrX 21888590 21888928 -155085212 - MER2 DNA MER2_type 0 344 1 23 33 0 0 chrX 21889100 21889130 -155085010 + AT_rich Low_complexity Low_complexity 1 30 0 1911 127 22 6 chrX 21889564 21889886 -155084254 + L1MA4A LINE L1 5972 6298 -5 329 329 32 27 chrX 21890147 21890366 -155083774 + L1M4 LINE L1 2388 2607 -3539 753 87 0 0 chrX 21891396 21891499 -155082641 - AluSg/x SINE Alu -10 299 197 2086 117 0 7 chrX 21892217 21892516 -155081624 + AluSx SINE Alu 1 297 -15 180 179 0 0 chrX 21892600 21892639 -155081501 + CT-rich Low_complexity Low_complexity 3 41 0 22 0 0 0 chrX 21893515 21893537 -155080603 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chrX 21894617 21894642 -155079498 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 603 326 51 43 chrX 21894650 21895064 -155079076 - L2 LINE L2 -20 3293 2877 247 208 0 0 chrX 21896328 21896376 -155077764 + L2 LINE L2 3224 3271 -1 495 316 146 40 chrX 21897785 21898007 -155076133 - L2 LINE L2 -1 3312 3115 299 25 25 0 chrX 21898007 21898047 -155076093 + (TG)n Simple_repeat Simple_repeat 1 41 0 495 316 146 40 chrX 21898047 21898432 -155075708 - L2 LINE L2 -198 3115 2646 344 299 84 13 chrX 21898509 21898663 -155075477 - L2 LINE L2 -1108 2206 2042 379 323 48 33 chrX 21898775 21899060 -155075080 - L1MEc LINE L1 -857 1719 1535 24 32 0 0 chrX 21899532 21899563 -155074577 + AT_rich Low_complexity Low_complexity 1 31 0 305 277 89 9 chrX 21900382 21900494 -155073646 - MER103 DNA DNA -45 121 1 333 323 71 13 chrX 21900539 21900694 -155073446 + MIR SINE MIR 49 212 -50 904 184 6 0 chrX 21900801 21900964 -155073176 - AluSg/x SINE Alu -19 293 130 446 157 63 0 chrX 21900964 21901123 -155073017 + (TA)n Simple_repeat Simple_repeat 2 170 0 314 131 62 35 chrX 21901216 21901361 -155072779 + (CATATA)n Simple_repeat Simple_repeat 2 150 0 214 194 83 0 chrX 21901367 21901439 -155072701 + (TA)n Simple_repeat Simple_repeat 1 78 0 413 206 71 24 chrX 21901475 21901645 -155072495 + (TA)n Simple_repeat Simple_repeat 1 178 0 318 217 50 50 chrX 21901649 21901810 -155072330 + (TATATG)n Simple_repeat Simple_repeat 2 162 0 628 112 20 0 chrX 21901810 21901908 -155072232 - AluS SINE Alu -213 100 1 1252 200 56 4 chrX 21903076 21903346 -155070794 + AluJb SINE Alu 5 288 -24 351 341 8 6 chrX 21904070 21904233 -155069907 + Tigger1 DNA MER2_type 967 1110 -1308 234 128 0 0 chrX 21905111 21905150 -155068990 + (CA)n Simple_repeat Simple_repeat 1 39 0 954 171 5 31 chrX 21905469 21905662 -155068478 + L1MA7 LINE L1 5886 6073 -218 248 351 52 47 chrX 21905950 21906141 -155067999 + MIR3 SINE MIR 1 156 -52 309 244 58 0 chrX 21906288 21906374 -155067766 - MIR SINE MIR -90 172 82 268 372 31 16 chrX 21907217 21907346 -155066794 + L2 LINE L2 3136 3266 -6 931 323 116 64 chrX 21908186 21909372 -155064768 + L2 LINE L2 1657 2904 -410 297 290 47 37 chrX 21909855 21909962 -155064178 + L2 LINE L2 3146 3253 -19 247 264 14 28 chrX 21910334 21910406 -155063734 + L2 LINE L2 3201 3271 -1 621 247 63 6 chrX 21911484 21911658 -155062482 - MER115 DNA AcHobo -1 692 509 812 76 21 14 chrX 21911658 21911802 -155062338 + (TTTC)n Simple_repeat Simple_repeat 3 147 0 2320 164 34 11 chrX 21911987 21912433 -155061707 - L1MB1 LINE L1 -1 6167 5712 271 315 159 41 chrX 21912439 21912746 -155061394 - MER115 DNA AcHobo -261 432 12 440 176 10 0 chrX 21912901 21913003 -155061137 + L1MA4 LINE L1 6196 6298 -2 377 320 128 53 chrX 21913957 21914372 -155059768 + MLT1K LTR MaLR 137 582 -6 343 321 46 0 chrX 21914430 21914539 -155059601 + MIR SINE MIR 3 116 -146 325 303 90 8 chrX 21914638 21914760 -155059380 - MIR SINE MIR -59 203 72 489 258 8 38 chrX 21914809 21914941 -155059199 + L2 LINE L2 3184 3311 -2 202 327 58 0 chrX 21914944 21914996 -155059144 - L2 LINE L2 -100 3172 3118 187 321 25 49 chrX 21915900 21915981 -155058159 + L2 LINE L2 1346 1424 -1890 190 322 28 28 chrX 21916227 21916343 -155057797 + MIR SINE MIR 36 152 -56 270 317 192 56 chrX 21916702 21917453 -155056687 + L2 LINE L2 1890 2742 -572 310 321 0 0 chrX 21917455 21917539 -155056601 + L2 LINE L2 3188 3271 -1 248 158 18 0 chrX 21918145 21918202 -155055938 + CT-rich Low_complexity Low_complexity 1 58 0 462 79 0 0 chrX 21918202 21918265 -155055875 + (TG)n Simple_repeat Simple_repeat 2 64 0 715 266 183 66 chrX 21918302 21918696 -155055444 + MLT1J2 LTR MaLR 1 440 -10 892 212 39 10 chrX 21919886 21920089 -155054051 + MER3 DNA MER1_type 1 209 0 213 154 0 0 chrX 21920582 21920621 -155053519 + (ATG)n Simple_repeat Simple_repeat 1 39 0 523 292 188 0 chrX 21920636 21920838 -155053302 - MIR SINE MIR -21 241 2 1917 141 3 7 chrX 21920901 21921206 -155052934 - AluSq SINE Alu -9 304 1 2629 128 59 15 chrX 21921307 21921782 -155052358 - L1PA16 LINE L1 0 6166 5671 21 0 0 0 chrX 21921881 21921902 -155052238 + AT_rich Low_complexity Low_complexity 1 21 0 194 305 85 25 chrX 21922145 21922263 -155051877 - MIR SINE MIR -72 190 66 2281 92 0 7 chrX 21922278 21922583 -155051557 + AluSc SINE Alu 1 303 -6 1502 181 42 0 chrX 21923547 21923856 -155050284 - MER33 DNA MER1_type -2 322 1 471 253 172 14 chrX 21924081 21924377 -155049763 - L1ME3A LINE L1 -219 5951 5609 1409 203 84 26 chrX 21924666 21925011 -155049129 - MLT1B LTR MaLR -25 365 1 269 356 144 0 chrX 21927314 21927432 -155046708 + L2 LINE L2 3138 3272 0 234 320 134 0 chrX 21928581 21928678 -155045462 - L2 LINE L2 -5 3308 3199 695 186 73 40 chrX 21929832 21930009 -155044131 + MER5A DNA MER1_type 2 184 -5 * 750 269 11 6 chrX 21930000 21930175 -155043965 + MER5A DNA MER1_type 8 183 -6 720 246 11 11 chrX 21930191 21930366 -155043774 + MER5B DNA MER1_type 4 178 0 355 274 184 18 chrX 21930715 21930883 -155043257 - MIR SINE MIR 0 262 67 273 295 57 33 chrX 21931795 21931917 -155042223 - L2 LINE L2 -2 3311 3187 2273 111 7 0 chrX 21932023 21932330 -155041810 + AluSg SINE Alu 1 309 -1 223 407 0 0 chrX 21932354 21932462 -155041678 - L2 LINE L2 -216 3056 2949 371 300 9 9 chrX 21932558 21932668 -155041472 - MER94 DNA DNA -5 129 20 200 375 80 40 chrX 21933234 21933458 -155040682 - L2 LINE L2 -642 2672 2440 776 295 36 65 chrX 21933529 21933976 -155040164 - LTR33A LTR ERVL -32 491 58 1021 221 14 5 chrX 21934931 21935148 -155038992 + MER63B DNA MER1_type 1 219 -217 432 279 88 72 chrX 21935257 21935508 -155038632 - MIR SINE MIR -5 257 3 436 366 58 0 chrX 21936914 21937086 -155037054 + MIR SINE MIR 81 262 0 1218 231 116 31 chrX 21937900 21938159 -155035981 - MLT1C LTR MaLR -7 460 224 252 0 0 0 chrX 21938159 21938187 -155035953 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3676 30 0 5 chrX 21938187 21938625 -155035515 - L1PA3 LINE L1 -18 6137 5702 1218 231 116 31 chrX 21938625 21938788 -155035352 - MLT1C LTR MaLR -242 225 1 378 295 115 38 chrX 21941192 21941375 -155032765 + MIR SINE MIR 5 201 -61 240 359 69 30 chrX 21942155 21942286 -155031854 - MIR3 SINE MIR -21 187 52 1046 202 10 10 chrX 21944118 21944321 -155029819 - L1ME1 LINE L1 0 6166 5964 784 161 0 0 chrX 21944566 21944696 -155029444 + MER3 DNA MER1_type 80 209 0 684 211 0 108 chrX 21947916 21948101 -155026039 - MER5B DNA MER1_type -3 175 11 364 216 49 0 chrX 21949947 21950049 -155024091 - L1ME4a LINE L1 0 6121 6015 28 0 0 0 chrX 21952873 21952901 -155021239 + AT_rich Low_complexity Low_complexity 1 28 0 443 301 169 41 chrX 21953221 21953540 -155020600 + L2 LINE L2 2949 3308 -5 926 181 5 11 chrX 21955417 21955605 -155018535 + L1PA16 LINE L1 5978 6164 -2 26 30 0 0 chrX 21955648 21955681 -155018459 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 21955989 21956010 -155018130 + AT_rich Low_complexity Low_complexity 1 21 0 1760 217 20 72 chrX 21956099 21956588 -155017552 + MLT2B1 LTR ERVL 1 464 -56 239 53 0 26 chrX 21956598 21956636 -155017504 + (GA)n Simple_repeat Simple_repeat 1 37 0 229 216 20 0 chrX 21956744 21956795 -155017345 + L1MA6 LINE L1 6025 6076 -224 2457 71 0 7 chrX 21956905 21957215 -155016925 - AluY SINE Alu -3 308 1 3217 117 20 0 chrX 21957336 21957824 -155016316 - L1MA6 LINE L1 -422 5878 5381 1739 202 14 3 chrX 21957821 21958168 -155015972 + L1MA6 LINE L1 5868 6218 -82 * 225 138 75 0 chrX 21958331 21958411 -155015729 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 2361 91 3 0 chrX 21958696 21959004 -155015136 + AluSc SINE Alu 1 309 0 38 68 0 0 chrX 21959101 21959174 -155014966 + AT_rich Low_complexity Low_complexity 1 73 0 294 251 146 5 chrX 21959228 21959332 -155014808 - L1ME1 LINE L1 -351 5770 5656 244 340 94 77 chrX 21959332 21959788 -155014352 + L2 LINE L2 2850 3313 0 29 28 0 0 chrX 21962636 21962672 -155011468 + AT_rich Low_complexity Low_complexity 1 36 0 199 264 108 61 chrX 21962886 21963034 -155011106 - L3b LINE CR1 -147 1436 1282 195 344 8 57 chrX 21964599 21964721 -155009419 - L3 LINE CR1 -759 818 703 3012 193 64 19 chrX 21964816 21965491 -155008649 - L1ME2 LINE L1 -99 6065 5361 1450 213 7 7 chrX 21966048 21966330 -155007810 + AluJo SINE Alu 1 282 -30 385 254 118 0 chrX 21966508 21966618 -155007522 - L2 LINE L2 -1 3271 3149 191 254 91 0 chrX 21968186 21968241 -155005899 - L2 LINE L2 -4 3309 3250 285 301 24 24 chrX 21969055 21969138 -155005002 + L2 LINE L2 2222 2304 -1010 367 330 41 18 chrX 21969138 21969356 -155004784 + L2 LINE L2 2473 2695 -619 203 294 0 0 chrX 21969358 21969409 -155004731 + L2 LINE L2 3249 3299 -14 2589 147 9 13 chrX 21970975 21971423 -155002717 - L1PA16 LINE L1 -11 6155 5710 304 318 0 12 chrX 21973313 21973398 -155000742 - MER5B DNA MER1_type -74 104 21 407 293 159 6 chrX 21974232 21974389 -154999751 + MER5A DNA MER1_type 9 189 0 345 225 0 0 chrX 21975100 21975189 -154998951 + CT-rich Low_complexity Low_complexity 1 89 0 313 346 56 0 chrX 21975212 21975319 -154998821 - L2 LINE L2 0 3272 3160 246 170 0 38 chrX 21975320 21975373 -154998767 + HSMAR1 DNA Mariner 1237 1287 0 647 334 93 30 chrX 21978484 21978720 -154995420 + L2 LINE L2 2356 2576 -696 4097 141 35 3 chrX 21978720 21979396 -154994744 - L1PA16 LINE L1 -9 6157 5460 647 334 93 30 chrX 21979396 21979821 -154994319 + L2 LINE L2 2576 3055 -217 540 309 39 17 chrX 21980622 21980803 -154993337 - MIR SINE MIR -8 254 70 1097 162 158 0 chrX 21980917 21981145 -154992995 + MER21A LTR ERV1 1 264 -667 3016 141 34 54 chrX 21981150 21981477 -154992663 + MER21A LTR ERV1 376 689 -242 285 98 0 0 chrX 21981477 21981518 -154992622 + (TG)n Simple_repeat Simple_repeat 1 41 0 3016 141 34 54 chrX 21981518 21981750 -154992390 + MER21A LTR ERV1 689 924 -7 479 203 16 55 chrX 21982017 21982145 -154991995 + MER94 DNA DNA 1 123 -11 256 276 0 0 chrX 21982372 21982430 -154991710 + L2 LINE L2 3254 3311 -2 2263 113 0 0 chrX 21982576 21982877 -154991263 - AluSc SINE Alu -8 301 1 2350 101 0 0 chrX 21984571 21984878 -154989262 + AluSx SINE Alu 1 307 -5 23 0 0 0 chrX 21984884 21984907 -154989233 + AT_rich Low_complexity Low_complexity 1 23 0 2286 101 0 3 chrX 21985376 21985684 -154988456 + AluSg SINE Alu 1 307 -3 522 0 0 0 chrX 21987093 21987151 -154986989 + (CA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chrX 21987529 21987552 -154986588 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chrX 21988152 21988187 -154985953 + AT_rich Low_complexity Low_complexity 1 35 0 1075 235 72 7 chrX 21988813 21989090 -154985050 + Charlie4a DNA MER1_type 6 300 -208 330 156 62 0 chrX 21989097 21989161 -154984979 + Charlie4a DNA MER1_type 426 493 -15 845 251 89 124 chrX 21989646 21989821 -154984319 - L1MC4 LINE L1 -6 8036 7856 279 0 0 0 chrX 21989821 21989852 -154984288 + (CA)n Simple_repeat Simple_repeat 1 31 0 845 251 89 124 chrX 21989852 21990885 -154983255 - L1MC4 LINE L1 -186 7856 6766 505 236 105 74 chrX 21991676 21991905 -154982235 + Charlie8 DNA MER1_type 1 236 -2181 344 145 246 56 chrX 21991908 21992060 -154982080 + MER5A DNA MER1_type 4 189 0 757 271 65 5 chrX 21992215 21992429 -154981711 - MIR SINE MIR -21 241 15 258 125 0 0 chrX 21992660 21992708 -154981432 + (A)n Simple_repeat Simple_repeat 1 48 0 314 378 18 74 chrX 21992708 21993047 -154981093 + L2 LINE L2 2945 3264 -8 263 363 60 44 chrX 21993832 21994014 -154980126 - L2 LINE L2 -209 3063 2879 1906 115 59 7 chrX 21994390 21994678 -154979462 + AluSx SINE Alu 1 303 -9 306 329 25 86 chrX 21995346 21995705 -154978435 - L2 LINE L2 -766 2548 2212 320 331 25 32 chrX 21996337 21996494 -154977646 + L2 LINE L2 2854 3009 -304 836 275 73 68 chrX 21996520 21996946 -154977194 - MLT1J2 LTR MaLR -21 429 2 600 229 92 82 chrX 21996947 21997239 -154976901 + L2 LINE L2 3011 3305 -8 477 246 75 30 chrX 21997609 21997743 -154976397 - MIR SINE MIR -74 188 49 201 39 0 0 chrX 21998272 21998298 -154975842 + (CA)n Simple_repeat Simple_repeat 2 27 0 315 325 113 29 chrX 22000825 22001206 -154972934 + L1ME4a LINE L1 5483 5895 -226 598 121 0 0 chrX 22002659 22002750 -154971390 + L1MA1 LINE L1 6212 6302 0 191 430 63 6 chrX 22003084 22003242 -154970898 + L2 LINE L2 3096 3262 -10 1049 262 91 3 chrX 22003277 22003667 -154970473 + L1ME3A LINE L1 5725 6165 -5 304 251 81 11 chrX 22003946 22004040 -154970100 + MLT1H1 LTR MaLR 414 502 -53 1036 177 9 78 chrX 22004147 22004379 -154969761 + MER20 DNA MER1_type 4 219 0 1978 134 0 10 chrX 22004409 22004429 -154969711 - AluSx SINE Alu -9 303 284 372 43 0 0 chrX 22004429 22004475 -154969665 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1978 134 0 10 chrX 22004475 22004760 -154969380 - AluSx SINE Alu -28 284 1 341 280 19 0 chrX 22005322 22005429 -154968711 + (TA)n Simple_repeat Simple_repeat 2 110 0 220 336 69 9 chrX 22005968 22006084 -154968056 - MIR SINE MIR -6 256 134 187 416 0 0 chrX 22006240 22006317 -154967823 - L2 LINE L2 -8 3264 3188 619 255 46 10 chrX 22006506 22006702 -154967438 + MER3 DNA MER1_type 1 203 -6 694 280 24 60 chrX 22006816 22007066 -154967074 + MIR SINE MIR 17 257 -5 29 28 0 0 chrX 22008147 22008183 -154965957 + AT_rich Low_complexity Low_complexity 1 36 0 542 250 23 17 chrX 22008221 22008393 -154965747 - L1M4 LINE L1 -1218 4928 4756 282 173 93 0 chrX 22008400 22008475 -154965665 - L1MB7 LINE L1 0 6184 6103 378 249 79 68 chrX 22008484 22008599 -154965541 - L1MB3 LINE L1 -1 6182 6070 2303 83 3 3 chrX 22008599 22008900 -154965240 - AluSx SINE Alu -11 301 1 378 249 79 68 chrX 22008900 22009049 -154965091 - L1MB3 LINE L1 -113 6070 5915 2175 115 3 6 chrX 22011077 22011390 -154962750 + AluSx SINE Alu 1 312 0 248 326 18 13 chrX 22011616 22011743 -154962397 + MIR SINE MIR 20 147 -71 322 237 200 30 chrX 22011924 22011942 -154962198 - MER5A DNA MER1_type -6 183 169 4236 193 24 3 chrX 22011942 22012790 -154961350 + MER6 DNA MER2_type 1 865 0 322 237 200 30 chrX 22012790 22012906 -154961234 - MER5A DNA MER1_type -20 169 26 611 260 25 5 chrX 22013236 22013390 -154960750 + LTR33A LTR ERVL 65 221 -300 1589 244 133 11 chrX 22013691 22014133 -154960007 - MLT1H LTR MaLR -13 536 41 308 293 171 0 chrX 22014369 22014509 -154959631 - L2 LINE L2 0 3313 3150 5449 97 11 5 chrX 22014975 22015777 -154958363 - L1MA2 LINE L1 0 6304 5498 369 16 0 49 chrX 22016234 22016295 -154957845 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 344 253 22 0 chrX 22016753 22016844 -154957296 - MLT1G1 LTR MaLR 0 555 463 815 225 61 80 chrX 22016886 22017253 -154956887 - MLT1G1 LTR MaLR -178 417 1 307 287 126 42 chrX 22017273 22017347 -154956793 + MIR SINE MIR 107 173 -89 9420 100 4 2 chrX 22017347 22018631 -154955509 - HSMAR1 DNA Mariner 0 1287 1 307 287 126 42 chrX 22018631 22018699 -154955441 + MIR SINE MIR 173 261 -1 226 295 16 0 chrX 22019581 22019642 -154954498 - MIR SINE MIR 0 262 201 201 94 0 0 chrX 22020463 22020495 -154953645 + (T)n Simple_repeat Simple_repeat 1 32 0 268 269 68 78 chrX 22020501 22020720 -154953420 - MLT1K LTR MaLR -172 416 200 382 287 35 0 chrX 22021031 22021146 -154952994 + LTR16C LTR ERVL 1 119 -372 3331 66 2 7 chrX 22021299 22021740 -154952400 - L1PA6 LINE L1 -15 6139 5701 1966 157 7 3 chrX 22022208 22022513 -154951627 - AluSx SINE Alu -6 306 1 269 329 12 0 chrX 22022670 22022773 -154951367 - MIR SINE MIR -67 141 37 24 0 0 0 chrX 22023173 22023197 -154950943 + AT_rich Low_complexity Low_complexity 1 24 0 351 226 129 0 chrX 22023331 22023424 -154950716 + MER67D-int LTR ERV1 63 167 -4769 2633 219 23 31 chrX 22023681 22024284 -154949856 + MER67D-int LTR ERV1 369 966 -3970 781 198 78 12 chrX 22024283 22024619 -154949521 + MER67D-int LTR ERV1 1968 2357 -2579 * 4827 223 51 68 chrX 22024932 22026568 -154947572 + MER67D-int LTR ERV1 2480 4088 -848 1170 165 36 94 chrX 22026571 22026880 -154947260 - L1MA10 LINE L1 -1 6333 6043 516 212 176 6 chrX 22026881 22027051 -154947089 + MER67D-int LTR ERV1 4083 4281 -655 289 147 80 27 chrX 22027052 22027127 -154947013 + LTR37A LTR ERV1 51 129 -297 424 225 0 0 chrX 22027215 22027304 -154946836 + MER67D-int LTR ERV1 4381 4469 -467 458 214 6 54 chrX 22027385 22027570 -154946570 + MER67D-int LTR ERV1 4482 5943 -371 * 633 216 140 59 chrX 22027539 22027775 -154946365 + MER67D-int LTR ERV1 4582 4836 -100 1882 196 80 54 chrX 22027857 22028358 -154945782 + MER67D LTR ERV1 1 514 0 21 0 0 0 chrX 22032317 22032338 -154941802 + AT_rich Low_complexity Low_complexity 1 21 0 2468 123 76 28 chrX 22032361 22032824 -154941316 + MER31A LTR ERV1 1 485 0 326 336 0 8 chrX 22033830 22033952 -154940188 - MIR SINE MIR -14 248 128 552 321 86 21 chrX 22033995 22034238 -154939902 + MIR SINE MIR 2 260 -2 854 123 0 8 chrX 22034288 22034410 -154939730 + FLAM_C SINE Alu 1 121 -22 218 0 94 0 chrX 22034422 22034454 -154939686 + A-rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chrX 22034867 22034890 -154939250 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chrX 22035307 22035336 -154938804 + AT_rich Low_complexity Low_complexity 1 29 0 526 189 0 11 chrX 22035845 22035940 -154938200 - AluJ/FLAM SINE Alu -218 94 1 324 320 95 40 chrX 22036281 22036606 -154937534 + L2 LINE L2 1852 2194 -1120 1024 302 40 22 chrX 22036628 22037029 -154937111 - MLT1J LTR MaLR 0 511 104 258 304 9 27 chrX 22037131 22037243 -154936897 + L2 LINE L2 2275 2384 -930 205 353 59 29 chrX 22037460 22037596 -154936544 - MIR SINE MIR -103 159 20 1700 166 3 36 chrX 22037802 22038104 -154936036 - AluJb SINE Alu -20 292 1 1461 174 17 34 chrX 22038122 22038491 -154935649 - L1MA4 LINE L1 -4 6167 5757 22 70 0 0 chrX 22038741 22038784 -154935356 + AT_rich Low_complexity Low_complexity 1 43 0 391 289 70 6 chrX 22039174 22039330 -154934810 + MIR SINE MIR 90 255 -7 291 333 89 13 chrX 22039427 22039728 -154934412 + L1M4 LINE L1 104 534 -6012 3790 259 85 43 chrX 22039872 22041585 -154932555 + L1M4 LINE L1 745 2384 -4260 1825 171 44 0 chrX 22041585 22041800 -154932340 + MER46B DNA MER2_type 2 114 -2617 588 65 0 0 chrX 22041800 22041877 -154932263 + (TA)n Simple_repeat Simple_repeat 2 78 0 1825 171 44 0 chrX 22041877 22042005 -154932135 + MER46B DNA MER2_type 114 235 -1 3790 259 85 43 chrX 22042005 22043349 -154930791 + L1M4 LINE L1 2384 4027 -2617 2059 210 33 65 chrX 22043346 22044021 -154930119 + L1M4 LINE L1 4648 5300 -1344 * 355 242 0 21 chrX 22044091 22044186 -154929954 + L1M4 LINE L1 5299 5391 -1253 4749 163 31 62 chrX 22044238 22045262 -154928878 + L1MA10 LINE L1 5282 6274 -60 503 195 0 0 chrX 22045262 22045344 -154928796 - Tigger5 DNA MER2_type 0 2323 2242 368 227 0 0 chrX 22045334 22045409 -154928731 + Tigger5 DNA MER2_type 2242 2316 -7 * 425 172 11 35 chrX 22045406 22045493 -154928647 - Tigger5 DNA MER2_type -2238 85 1 1338 196 65 4 chrX 22045565 22045840 -154928300 + AluJo SINE Alu 3 294 -18 348 319 105 57 chrX 22046589 22046818 -154927322 + L2 LINE L2 2820 3059 -254 413 316 30 15 chrX 22047351 22047484 -154926656 + L2 LINE L2 3134 3268 -4 1109 76 7 0 chrX 22047511 22047656 -154926484 + AluSg/x SINE Alu 161 306 -6 244 286 71 0 chrX 22047700 22047770 -154926370 + L2 LINE L2 3229 3303 -10 1964 73 9 98 chrX 22048179 22048506 -154925634 + AluSx SINE Alu 1 298 -14 1614 169 86 30 chrX 22048511 22048884 -154925256 - Charlie1b DNA MER1_type -129 394 1 480 18 0 0 chrX 22049058 22049115 -154925025 + (TC)n Simple_repeat Simple_repeat 2 58 0 902 212 18 0 chrX 22049768 22049938 -154924202 - MER58B DNA MER1_type 0 341 169 4649 61 22 3 chrX 22050060 22050686 -154923454 + L1PA7 LINE L1 5513 6150 -4 2354 182 18 16 chrX 22050700 22051210 -154922930 - L1MB2 LINE L1 -16 6155 5645 1905 193 58 10 chrX 22051210 22051603 -154922537 - MER47B DNA MER2_type 0 418 7 402 86 17 0 chrX 22051609 22051667 -154922473 - L1M3 LINE L1 -525 5646 5588 1803 148 12 21 chrX 22051667 22051998 -154922142 - L1MB2 LINE L1 -545 5626 5299 191 122 0 24 chrX 22052436 22052477 -154921663 + (TA)n Simple_repeat Simple_repeat 2 41 0 2263 67 7 3 chrX 22053498 22053798 -154920342 - AluY SINE Alu -10 301 1 2267 130 0 0 chrX 22053798 22054120 -154920020 - MER48 LTR ERV1 -65 322 1 272 242 76 102 chrX 22054120 22054272 -154919868 - MER112 DNA MER1_type -32 228 81 29 21 0 21 chrX 22054417 22054429 -154919711 + AT_rich Low_complexity Low_complexity 1 12 -34 2129 97 4 0 chrX 22054429 22054707 -154919433 + AluSg SINE Alu 1 279 -31 29 21 0 21 chrX 22054707 22054741 -154919399 + AT_rich Low_complexity Low_complexity 12 46 0 270 0 0 0 chrX 22054883 22054913 -154919227 + (TG)n Simple_repeat Simple_repeat 2 31 0 315 0 0 0 chrX 22055089 22055124 -154919016 + (TG)n Simple_repeat Simple_repeat 2 36 0 261 0 0 0 chrX 22055193 22055222 -154918918 + (CA)n Simple_repeat Simple_repeat 2 30 0 1085 259 88 37 chrX 22055233 22055769 -154918371 - L1MC4a LINE L1 -1959 5849 5287 213 229 0 21 chrX 22057311 22057359 -154916781 - MER5A DNA MER1_type -142 47 1 21 0 0 0 chrX 22058254 22058275 -154915865 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chrX 22058405 22058437 -154915703 + AT_rich Low_complexity Low_complexity 1 32 0 2312 112 0 0 chrX 22059452 22059764 -154914376 - AluSx SINE Alu 0 312 1 280 274 134 18 chrX 22060448 22060612 -154913528 - L1ME LINE L1 -411 5751 5569 359 262 113 1 chrX 22060613 22060801 -154913339 - L1P5 LINE L1 -693 5458 5254 992 198 38 9 chrX 22061868 22062080 -154912060 + MER20 DNA MER1_type 2 219 0 470 287 59 51 chrX 22062191 22062445 -154911695 + MIR SINE MIR 5 260 -2 576 250 17 23 chrX 22062502 22062674 -154911466 - MER104 DNA Tc2 0 180 10 265 291 107 15 chrX 22063270 22063416 -154910724 - MIR SINE MIR -66 196 29 860 256 82 0 chrX 22063448 22063655 -154910485 + MER58A DNA MER1_type 1 224 0 2060 116 7 0 chrX 22063677 22063961 -154910179 + AluSx SINE Alu 1 286 -26 21 57 0 0 chrX 22063964 22063999 -154910141 + AT_rich Low_complexity Low_complexity 1 35 0 525 81 11 0 chrX 22064090 22064177 -154909963 - L1MA7 LINE L1 0 6291 6204 322 184 0 122 chrX 22064237 22064335 -154909805 - MER58B DNA MER1_type -5 336 251 1299 255 50 35 chrX 22064596 22065272 -154908868 + L2 LINE L2 2626 3307 -6 411 207 20 44 chrX 22066037 22066151 -154907989 - MLT1I LTR MaLR 0 567 278 309 225 45 54 chrX 22066308 22066419 -154907721 - MLT1I LTR MaLR -341 208 99 355 263 44 31 chrX 22066500 22066660 -154907480 + MER104 DNA Tc2 5 166 -14 1636 86 35 0 chrX 22066730 22066962 -154907178 + L1PA13 LINE L1 5921 6160 -3 22 35 0 0 chrX 22067128 22067157 -154906983 + AT_rich Low_complexity Low_complexity 1 29 0 245 270 63 0 chrX 22067552 22067615 -154906525 + L2 LINE L2 3200 3266 -6 189 0 0 0 chrX 22067617 22067638 -154906502 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 395 308 205 11 chrX 22068864 22069049 -154905091 + MIR SINE MIR 40 260 -2 333 0 0 0 chrX 22070387 22070424 -154903716 + (TG)n Simple_repeat Simple_repeat 2 38 0 529 51 13 13 chrX 22071405 22071483 -154902657 + (GA)n Simple_repeat Simple_repeat 1 78 0 349 290 164 39 chrX 22071692 22071899 -154902241 + L2 LINE L2 2899 3131 -182 429 167 0 0 chrX 22071899 22071977 -154902163 + (TA)n Simple_repeat Simple_repeat 1 78 0 1019 168 97 0 chrX 22071977 22072162 -154901978 - Tigger1 DNA MER2_type 0 2418 2216 5444 168 24 23 chrX 22072168 22072835 -154901305 + L1PA16 LINE L1 4351 5016 -1150 2093 99 0 24 chrX 22072835 22073129 -154901011 + AluSc SINE Alu 1 287 -22 5444 168 24 23 chrX 22073129 22074274 -154899866 + L1PA16 LINE L1 5016 6157 -9 13883 133 19 10 chrX 22074282 22076495 -154897645 - Tigger1 DNA MER2_type -187 2231 1 238 250 21 14 chrX 22076495 22076639 -154897501 + (TA)n Simple_repeat Simple_repeat 2 146 0 300 324 121 11 chrX 22077616 22077798 -154896342 - L2 LINE L2 0 3313 3112 214 344 54 11 chrX 22078107 22078200 -154895940 + MIR SINE MIR 20 116 -146 378 340 73 5 chrX 22079394 22079600 -154894540 - L3b LINE CR1 -161 1422 1203 2264 91 0 0 chrX 22082252 22082539 -154891601 + AluSq SINE Alu 1 287 -26 824 123 0 7 chrX 22083598 22083736 -154890404 + (TC)n Simple_repeat Simple_repeat 1 137 0 2239 87 7 13 chrX 22085145 22085443 -154888697 + AluY SINE Alu 3 298 -13 854 289 60 16 chrX 22085846 22086164 -154887976 - MER90 LTR ERV1 -7 607 276 332 220 77 71 chrX 22086170 22086338 -154887802 - MER90 LTR ERV1 -406 169 1 2327 78 3 0 chrX 22086435 22086730 -154887410 - AluSp SINE Alu -17 296 1 22 35 0 0 chrX 22087487 22087516 -154886624 + AT_rich Low_complexity Low_complexity 1 29 0 37 0 0 0 chrX 22087568 22087605 -154886535 + AT_rich Low_complexity Low_complexity 1 37 0 2722 125 22 16 chrX 22087655 22088102 -154886038 - L1PB2 LINE L1 -1 6150 5701 5084 195 21 89 chrX 22088109 22088353 -154885787 - L1 LINE L1 -2445 3701 3442 2159 134 0 0 chrX 22088353 22088659 -154885481 - AluSg SINE Alu -4 306 1 5084 195 21 89 chrX 22088659 22089946 -154884194 - L1 LINE L1 -2704 3442 2275 496 162 0 12 chrX 22089947 22090046 -154884094 - L1MA4 LINE L1 -45 6255 6161 353 305 114 38 chrX 22091175 22091385 -154882755 - MIR SINE MIR -5 257 32 630 182 131 6 chrX 22092278 22092454 -154881686 + MER63 DNA MER1_type 821 1018 -43 36 23 0 0 chrX 22092489 22092532 -154881608 + AT_rich Low_complexity Low_complexity 1 43 0 1974 104 45 0 chrX 22092604 22092893 -154881247 + AluSq SINE Alu 1 302 -11 1480 178 42 18 chrX 22093282 22093568 -154880572 + AluJb SINE Alu 1 293 -19 313 297 55 48 chrX 22093740 22093885 -154880255 - L2 LINE L2 -1 3271 3126 3432 54 75 6 chrX 22093894 22094374 -154879766 - LTR10D LTR ERV1 0 513 1 432 0 0 0 chrX 22094454 22094502 -154879638 + (CA)n Simple_repeat Simple_repeat 2 49 0 419 320 101 71 chrX 22094814 22095151 -154878989 + L2 LINE L2 2925 3271 -1 381 216 103 27 chrX 22095470 22095633 -154878507 - MLT1J2 LTR MaLR -9 437 269 295 308 105 0 chrX 22095646 22095789 -154878351 - MER105 DNA DNA 0 204 47 668 240 58 0 chrX 22095799 22095953 -154878187 + MER5A DNA MER1_type 26 188 -1 267 297 47 18 chrX 22096020 22096149 -154877991 - MLT1I LTR MaLR -203 206 99 573 194 8 47 chrX 22096231 22096360 -154877780 - MER63 DNA MER1_type -86 750 1 1120 250 39 0 chrX 22096383 22096643 -154877497 - LTR16A LTR ERVL -174 276 7 329 299 10 31 chrX 22096649 22096746 -154877394 - MER5B DNA MER1_type -67 111 17 372 290 100 56 chrX 22097383 22097724 -154876416 - LTR16A LTR ERVL -64 386 31 183 42 0 0 chrX 22098098 22098122 -154876018 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 416 312 116 6 chrX 22098806 22098979 -154875161 - L2 LINE L2 0 3313 3122 417 239 197 8 chrX 22099002 22099119 -154875021 + MER5A DNA MER1_type 49 187 -2 480 286 143 15 chrX 22099122 22099381 -154874759 - L2 LINE L2 -185 3128 2837 322 280 42 25 chrX 22100044 22100162 -154873978 - MIR SINE MIR -122 140 21 2135 130 10 0 chrX 22100303 22100332 -154873808 - AluSx SINE Alu -1 311 284 252 0 0 0 chrX 22100332 22100360 -154873780 + (TG)n Simple_repeat Simple_repeat 1 28 0 2135 130 10 0 chrX 22100360 22100638 -154873502 - AluSx SINE Alu -28 284 1 269 344 0 21 chrX 22100696 22100792 -154873348 - MIR3 SINE MIR -3 205 112 1165 274 48 46 chrX 22100971 22101474 -154872666 - MLT1H LTR MaLR -2 547 44 631 233 63 85 chrX 22101571 22101695 -154872445 - MER5A DNA MER1_type -3 186 66 2335 86 0 0 chrX 22101695 22101986 -154872154 - AluSx SINE Alu -21 291 1 631 233 63 85 chrX 22101986 22102050 -154872090 - MER5A DNA MER1_type -123 66 2 2388 31 0 10 chrX 22103132 22103424 -154870716 - AluY SINE Alu -22 289 1 292 229 16 0 chrX 22103575 22103636 -154870504 - MER58A DNA MER1_type -1 223 162 523 203 24 41 chrX 22103641 22103764 -154870376 - MER58A DNA MER1_type 0 140 20 835 273 85 28 chrX 22103773 22103955 -154870185 + LTR16C LTR ERVL 35 244 -247 2580 100 3 19 chrX 22103955 22104324 -154869816 - THE1B LTR MaLR -1 363 1 835 273 85 28 chrX 22104324 22104460 -154869680 + LTR16C LTR ERVL 244 371 -120 538 222 0 0 chrX 22104623 22104722 -154869418 + LTR16C LTR ERVL 393 491 0 640 293 6 6 chrX 22104748 22104915 -154869225 - MIR SINE MIR -90 172 6 182 36 0 36 chrX 22105011 22105039 -154869101 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3050 33 0 0 chrX 22105048 22105409 -154868731 - L1PA4 LINE L1 -5 6150 5790 23 0 0 0 chrX 22106111 22106134 -154868006 + AT_rich Low_complexity Low_complexity 1 23 0 193 350 38 19 chrX 22107228 22107388 -154866752 - L3b LINE CR1 -319 1264 1102 222 308 105 30 chrX 22107588 22107721 -154866419 - MIR3 SINE MIR -43 165 23 376 225 8 16 chrX 22108286 22108415 -154865725 + (TA)n Simple_repeat Simple_repeat 1 128 0 351 287 0 10 chrX 22108420 22108521 -154865619 - L1MC4 LINE L1 -1339 6703 6604 561 296 57 40 chrX 22109533 22109780 -154864360 - MIR SINE MIR -8 254 4 249 33 0 0 chrX 22110050 22110080 -154864060 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 1165 224 5 0 chrX 22111509 22111723 -154862417 - MER58A DNA MER1_type -9 215 1 848 330 108 60 chrX 22112540 22113539 -154860601 - L2 LINE L2 -8 3264 2221 2239 77 14 7 chrX 22113625 22113922 -154860218 + AluSp SINE Alu 1 299 -14 231 161 0 0 chrX 22113985 22114041 -154860099 + C-rich Low_complexity Low_complexity 1 56 0 208 198 0 60 chrX 22114133 22114249 -154859891 + C-rich Low_complexity Low_complexity 3 111 0 246 262 60 12 chrX 22114645 22114729 -154859411 - LTR65 LTR ERV1 -274 395 308 252 0 0 0 chrX 22115017 22115045 -154859095 + (TG)n Simple_repeat Simple_repeat 1 28 0 1065 280 77 17 chrX 22115847 22116355 -154857785 + L1MC/D LINE L1 5118 5655 -747 2163 154 25 3 chrX 22116463 22116819 -154857321 - THE1B LTR MaLR 0 364 1 423 249 134 17 chrX 22117660 22117926 -154856214 + L1ME LINE L1 5176 5469 -693 2723 199 96 92 chrX 22117996 22119221 -154854919 + Tigger3b DNA MER2_type 1 1230 -1 871 268 63 13 chrX 22119265 22119582 -154854558 + L1ME3A LINE L1 4446 4778 -1368 2200 264 65 24 chrX 22119923 22120830 -154853310 + L1ME3A LINE L1 5189 6155 -15 380 285 23 8 chrX 22120834 22120964 -154853176 + L1ME LINE L1 5570 5701 -420 5406 147 12 21 chrX 22121177 22122141 -154851999 + L1MA8 LINE L1 5326 6281 -10 284 341 66 28 chrX 22122408 22122619 -154851521 - MIR SINE MIR -24 238 20 2651 45 0 3 chrX 22122679 22122989 -154851151 + AluY SINE Alu 1 309 -2 475 276 178 20 chrX 22124320 22124472 -154849668 - MIR SINE MIR -81 181 6 327 25 0 0 chrX 22126958 22126998 -154847142 + (TC)n Simple_repeat Simple_repeat 1 40 0 * 348 24 0 0 chrX 22126997 22127038 -154847102 + (CA)n Simple_repeat Simple_repeat 1 41 0 684 184 0 29 chrX 22127577 22127756 -154846384 + FLAM_C SINE Alu 2 176 0 421 175 135 0 chrX 22127769 22127882 -154846258 - MER3 DNA MER1_type -79 130 48 216 0 0 0 chrX 22128135 22128159 -154845981 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chrX 22128239 22128261 -154845879 + AT_rich Low_complexity Low_complexity 1 22 0 1177 216 64 24 chrX 22128798 22129126 -154845014 + MER58B DNA MER1_type 1 341 0 23 33 0 0 chrX 22129629 22129659 -154844481 + AT_rich Low_complexity Low_complexity 1 30 0 1173 189 33 46 chrX 22129695 22129853 -154844287 + MER33 DNA MER1_type 1 155 -2430 1878 195 0 14 chrX 22129853 22130202 -154843938 - MER7A DNA MER2_type -4 342 1 1173 189 33 46 chrX 22130202 22130350 -154843790 + MER33 DNA MER1_type 155 303 -21 333 257 157 21 chrX 22131126 22131266 -154842874 + MIR3 SINE MIR 30 188 -20 193 242 0 0 chrX 22131330 22131363 -154842777 + L2 LINE L2 3158 3190 -82 22 0 0 0 chrX 22132257 22132279 -154841861 + AT_rich Low_complexity Low_complexity 1 22 0 200 211 0 0 chrX 22132340 22132378 -154841762 - L2 LINE L2 -21 3251 3214 278 235 133 0 chrX 22132708 22132806 -154841334 - MER53 DNA DNA 0 189 79 1619 204 83 47 chrX 22133461 22133994 -154840146 + MER69 DNA AcHobo 1975 2526 0 7763 20 0 0 chrX 22134271 22135375 -154838765 - L1PA3 LINE L1 0 6155 5052 5536 30 0 1 chrX 22135376 22136043 -154838097 + L1PA3 LINE L1 4399 5064 -1082 25 0 0 0 chrX 22136416 22136441 -154837699 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chrX 22136970 22136996 -154837144 + AT_rich Low_complexity Low_complexity 1 26 0 2129 127 48 22 chrX 22137591 22137946 -154836194 + THE1B LTR MaLR 1 364 0 1039 69 21 0 chrX 22137946 22138091 -154836049 + THE1B-int LTR MaLR 1 148 -1432 1196 118 20 0 chrX 22139163 22139367 -154834773 - L1MA8 LINE L1 0 6291 6084 260 344 110 13 chrX 22139694 22139848 -154834292 + MIR SINE MIR 66 234 -28 1294 167 75 3 chrX 22140398 22140691 -154833449 - MER33 DNA MER1_type -8 316 3 1488 270 66 40 chrX 22141679 22142256 -154831884 + MLT1E LTR MaLR 2 593 0 2526 105 16 5 chrX 22143325 22143696 -154830444 + THE1C LTR MaLR 1 375 0 763 273 53 5 chrX 22144459 22144668 -154829472 - LTR16C LTR ERVL 0 491 273 4892 49 10 5 chrX 22144669 22145405 -154828735 + L1P2 LINE L1 4747 5482 -672 1040 150 44 49 chrX 22145407 22145633 -154828507 - L1MA9 LINE L1 -75 6237 6013 2168 113 50 19 chrX 22145633 22145997 -154828143 + THE1C LTR MaLR 1 375 0 8774 114 69 8 chrX 22145997 22147493 -154826647 + THE1C-int LTR MaLR 1 1580 0 2257 104 50 19 chrX 22147493 22147857 -154826283 + THE1C LTR MaLR 1 375 0 376 313 99 21 chrX 22148245 22148478 -154825662 + L2 LINE L2 3057 3307 -6 240 163 0 0 chrX 22149943 22149986 -154824154 - L1MB2 LINE L1 -2 6169 6127 2418 154 19 12 chrX 22149986 22150415 -154823725 - MSTB1 LTR MaLR 0 432 1 521 386 84 30 chrX 22150497 22151186 -154822954 + L2 LINE L2 2243 2968 -346 408 252 69 31 chrX 22151406 22151642 -154822498 - MLT1L LTR MaLR -5 609 335 975 166 6 0 chrX 22153292 22153455 -154820685 + MER47A DNA MER2_type 13 176 -190 839 185 14 59 chrX 22153865 22154087 -154820053 + L1MA9 LINE L1 6096 6307 -5 390 333 40 94 chrX 22154106 22154601 -154819539 - L2 LINE L2 -98 3174 2699 285 299 55 16 chrX 22154658 22154785 -154819355 + MER94 DNA DNA 3 134 0 387 299 114 32 chrX 22154786 22155127 -154819013 - L2 LINE L2 -684 2630 2262 378 295 90 62 chrX 22155185 22155473 -154818667 - LTR16C LTR ERVL -8 483 188 977 83 7 7 chrX 22155880 22156024 -154818116 + MER47A DNA MER2_type 188 331 -35 416 188 0 0 chrX 22156025 22156094 -154818046 + MER47A DNA MER2_type 298 366 0 1469 209 144 75 chrX 22156126 22156898 -154817242 + LTR1B LTR ERV1 1 825 -1 22 0 0 0 chrX 22157635 22157657 -154816483 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 22158194 22158223 -154815917 + AT_rich Low_complexity Low_complexity 1 29 0 297 309 91 55 chrX 22158716 22158881 -154815259 + MIR3 SINE MIR 21 191 -17 2699 226 25 22 chrX 22160089 22161060 -154813080 + L1M4c LINE L1 2042 3025 -3357 1943 148 7 0 chrX 22162107 22162405 -154811735 - AluSx SINE Alu -12 300 1 723 333 44 0 chrX 22162508 22162760 -154811380 - LTR16A LTR ERVL 0 450 188 390 236 21 21 chrX 22163170 22163314 -154810826 + L1P LINE L1 5279 5422 -732 239 232 0 37 chrX 22213588 22213670 -154760470 + (TATAA)n Simple_repeat Simple_repeat 1 79 0 337 262 170 12 chrX 22213800 22214081 -154760059 - LTR33 LTR ERVL -150 371 3 21 0 0 0 chrX 22214085 22214106 -154760034 + AT_rich Low_complexity Low_complexity 1 21 0 4403 89 0 13 chrX 22214655 22215272 -154758868 + L1MA2 LINE L1 5354 5962 -342 640 211 124 55 chrX 22216614 22216832 -154757308 + MIR SINE MIR 30 262 0 385 324 14 22 chrX 22217069 22217208 -154756932 - MIR SINE MIR -98 164 27 506 322 50 6 chrX 22217426 22217606 -154756534 + MIR SINE MIR 75 262 0 284 298 73 116 chrX 22218247 22218576 -154755564 - L2 LINE L2 -1 3271 2957 414 0 0 0 chrX 22218645 22218691 -154755449 + (TG)n Simple_repeat Simple_repeat 2 47 0 2101 109 3 7 chrX 22219259 22219552 -154754588 - AluSx SINE Alu -20 292 1 755 179 30 36 chrX 22219728 22219896 -154754244 - Looper DNA T2_type 0 1558 1392 2222 85 3 7 chrX 22219896 22220178 -154753962 + AluSq SINE Alu 1 281 -32 211 28 56 0 chrX 22220179 22220215 -154753925 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1292 191 28 3 chrX 22220217 22220499 -154753641 - Looper DNA T2_type -588 970 682 290 296 28 0 chrX 22220607 22220678 -154753462 - MIR SINE MIR -184 78 6 210 356 152 8 chrX 22220768 22220900 -154753240 + L2 LINE L2 3118 3268 -4 795 243 6 23 chrX 22221391 22221568 -154752572 - MER45A DNA AcHobo -4 174 1 965 287 60 29 chrX 22222078 22222527 -154751613 - LTR16B LTR ERVL 0 464 2 300 372 32 26 chrX 22222685 22222841 -154751299 + L2 LINE L2 3097 3253 -19 1658 209 25 93 chrX 22222847 22223415 -154750725 + L1MC4 LINE L1 7513 8041 -1 180 347 19 42 chrX 22224656 22224872 -154749268 - L2 LINE L2 -2358 956 746 257 233 164 14 chrX 22225803 22225876 -154748264 + L2 LINE L2 3230 3313 0 30 59 0 0 chrX 22226941 22226992 -154747148 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chrX 22228908 22228930 -154745210 + AT_rich Low_complexity Low_complexity 1 22 0 180 182 0 0 chrX 22229006 22229050 -154745090 + (TG)n Simple_repeat Simple_repeat 2 45 0 291 311 104 18 chrX 22229054 22229134 -154745006 - MIR SINE MIR -77 185 113 2463 14 0 11 chrX 22229134 22229416 -154744724 + AluY SINE Alu 1 279 -32 291 311 104 18 chrX 22229416 22229499 -154744641 - MIR SINE MIR -149 113 8 862 273 171 11 chrX 22229717 22230091 -154744049 - MLT1J1 LTR MaLR 0 446 13 1371 208 42 21 chrX 22232618 22232907 -154741233 + AluJo SINE Alu 3 297 -15 24 32 0 0 chrX 22232907 22232938 -154741202 + AT_rich Low_complexity Low_complexity 1 31 0 2292 100 0 3 chrX 22233194 22233504 -154740636 - AluSg SINE Alu -1 309 1 294 315 59 85 chrX 22233997 22234192 -154739948 - MLT1J LTR MaLR -4 507 418 2321 86 13 0 chrX 22234192 22234496 -154739644 - AluSc SINE Alu 0 309 2 294 315 59 85 chrX 22234496 22234716 -154739424 - MLT1J LTR MaLR -93 418 194 243 311 27 0 chrX 22234823 22234897 -154739243 - MLT1L LTR MaLR -537 78 3 1556 55 0 0 chrX 22235601 22235783 -154738357 + AluY SINE Alu 1 182 -129 452 33 0 0 chrX 22235783 22235843 -154738297 + AluY SINE Alu 242 301 -10 832 215 35 63 chrX 22235853 22236076 -154738064 + L1MA10 LINE L1 6031 6246 -88 1917 135 19 61 chrX 22236076 22236439 -154737701 - MER7A DNA MER2_type 0 346 1 832 215 35 63 chrX 22236439 22236499 -154737641 + L1MA10 LINE L1 6246 6306 -28 266 289 99 0 chrX 22236649 22236791 -154737349 - MER103 DNA DNA -8 158 3 22 56 0 0 chrX 22237108 22237144 -154736996 + AT_rich Low_complexity Low_complexity 1 36 0 1445 271 70 22 chrX 22238676 22238991 -154735149 - LTR16A LTR ERVL -6 444 103 2016 156 37 0 chrX 22238991 22239343 -154734797 + MLT1A1 LTR MaLR 1 365 0 1445 271 70 22 chrX 22239343 22239440 -154734700 - LTR16A LTR ERVL -347 103 12 419 319 83 0 chrX 22240090 22240247 -154733893 - MIR SINE MIR -27 235 66 261 139 0 0 chrX 22240279 22240322 -154733818 + (TG)n Simple_repeat Simple_repeat 2 44 0 24 77 0 0 chrX 22241758 22241810 -154732330 + AT_rich Low_complexity Low_complexity 1 52 0 212 282 0 0 chrX 22242289 22242360 -154731780 + (TCTG)n Simple_repeat Simple_repeat 4 74 0 28 61 0 0 chrX 22242615 22242664 -154731476 + AT_rich Low_complexity Low_complexity 1 49 0 2403 162 42 23 chrX 22244541 22245017 -154729123 + MLT1D LTR MaLR 21 505 0 5972 20 1 0 chrX 22245527 22246225 -154727915 - L1PA3 LINE L1 -1393 4753 4055 7722 16 2 8 chrX 22246225 22247669 -154726471 + L1PA3 LINE L1 4738 6155 0 456 303 87 5 chrX 22247685 22247870 -154726270 + MIR SINE MIR 58 257 -5 337 244 70 46 chrX 22247879 22248017 -154726123 + MIR SINE MIR 19 159 -67 184 188 0 0 chrX 22250317 22250349 -154723791 - MIR SINE MIR -112 150 119 14972 133 13 15 chrX 22252327 22252622 -154721518 + Tigger1 DNA MER2_type 1 295 -2123 1559 181 0 36 chrX 22252622 22252931 -154721209 + AluJo SINE Alu 5 302 -10 5463 134 8 6 chrX 22252933 22254207 -154719933 - L1PA16 LINE L1 -6 6160 4874 14972 133 13 15 chrX 22254207 22256330 -154717810 + Tigger1 DNA MER2_type 296 2417 -1 2004 88 0 4 chrX 22256958 22257272 -154716868 - L1PA8 LINE L1 0 6172 5897 1520 102 0 0 chrX 22257549 22257775 -154716365 - L1MA2 LINE L1 0 6304 6079 336 64 0 0 chrX 22257908 22257955 -154716185 + (GA)n Simple_repeat Simple_repeat 2 48 0 30 27 0 0 chrX 22257959 22257996 -154716144 + AT_rich Low_complexity Low_complexity 1 37 0 261 0 0 0 chrX 22258005 22258034 -154716106 + (GA)n Simple_repeat Simple_repeat 2 30 0 2208 146 3 22 chrX 22258034 22258396 -154715744 - MLT2D LTR ERVL -57 357 3 1274 256 53 18 chrX 22259542 22259882 -154714258 - MLT1F LTR MaLR -5 537 186 543 321 25 5 chrX 22260590 22260786 -154713354 + MIR SINE MIR 7 206 -56 1435 185 72 70 chrX 22260824 22261197 -154712943 - MLT1A2 LTR MaLR 0 374 1 368 321 103 12 chrX 22262496 22262661 -154711479 - MIR SINE MIR -51 211 32 291 157 0 0 chrX 22262746 22262797 -154711343 + (TG)n Simple_repeat Simple_repeat 2 52 0 2295 75 3 0 chrX 22263028 22263354 -154710786 - AluSp SINE Alu 0 327 1 2656 20 3 0 chrX 22264060 22264361 -154709779 - AluY SINE Alu -9 302 1 24 0 0 0 chrX 22265320 22265344 -154708796 + AT_rich Low_complexity Low_complexity 1 24 0 218 270 95 0 chrX 22265776 22265839 -154708301 - L2 LINE L2 0 3313 3245 215 299 15 0 chrX 22265993 22266060 -154708080 + (TTCA)n Simple_repeat Simple_repeat 1 68 0 347 229 57 19 chrX 22266239 22266344 -154707796 + L2 LINE L2 3202 3310 -3 31 0 0 0 chrX 22267092 22267123 -154707017 + AT_rich Low_complexity Low_complexity 1 31 0 193 315 176 28 chrX 22267725 22267833 -154706307 - MIR SINE MIR -122 140 17 23 0 0 0 chrX 22268144 22268167 -154705973 + AT_rich Low_complexity Low_complexity 1 23 0 262 314 9 19 chrX 22269510 22269615 -154704525 - MER5B DNA MER1_type -58 120 17 305 24 24 0 chrX 22270001 22270043 -154704097 + (CA)n Simple_repeat Simple_repeat 2 44 0 225 0 0 0 chrX 22270043 22270068 -154704072 + (GA)n Simple_repeat Simple_repeat 1 25 0 234 0 0 0 chrX 22270329 22270355 -154703785 + (ATTG)n Simple_repeat Simple_repeat 4 29 0 1910 152 4 0 chrX 22270357 22270634 -154703506 - AluSx SINE Alu -34 278 1 210 167 0 56 chrX 22270719 22270773 -154703367 + GA-rich Low_complexity Low_complexity 2 52 0 274 292 115 19 chrX 22271000 22271209 -154702931 + L1ME4a LINE L1 5826 6054 -67 606 199 56 56 chrX 22271213 22271374 -154702766 - MER106A DNA MER1_type -75 161 1 183 268 54 54 chrX 22271388 22271444 -154702696 - MER5A DNA MER1_type -75 114 59 1450 136 34 23 chrX 22271988 22272253 -154701887 - L1PA16 LINE L1 0 6166 5899 207 261 72 63 chrX 22273745 22273856 -154700284 + L2 LINE L2 2197 2308 -1006 192 243 29 71 chrX 22274234 22274304 -154699836 - L2 LINE L2 -1 3271 3205 605 333 82 11 chrX 22274312 22274591 -154699549 + L2 LINE L2 2506 2804 -510 23 33 0 0 chrX 22275469 22275499 -154698641 + AT_rich Low_complexity Low_complexity 1 30 0 566 324 153 48 chrX 22276354 22276516 -154697624 - L2 LINE L2 -474 2840 2696 1764 127 0 4 chrX 22276516 22276769 -154697371 + AluSx SINE Alu 49 300 -12 566 324 153 48 chrX 22276769 22276827 -154697313 - L2 LINE L2 -618 2696 2645 685 250 23 11 chrX 22276827 22277003 -154697137 + MER5B DNA MER1_type 1 178 0 566 324 153 48 chrX 22277003 22277732 -154696408 - L2 LINE L2 -669 2645 1791 597 200 18 0 chrX 22277779 22277889 -154696251 - MER5A DNA MER1_type -77 112 1 2286 102 0 0 chrX 22279423 22279718 -154694422 - AluSg SINE Alu -15 295 1 311 291 107 5 chrX 22279739 22279935 -154694205 - L1MC4 LINE L1 -1 8041 7826 268 327 9 9 chrX 22279981 22280091 -154694049 - L1ME2 LINE L1 -10 6154 6045 223 312 21 54 chrX 22280339 22280432 -154693708 - MIR3 SINE MIR -11 197 108 251 325 51 0 chrX 22280478 22280595 -154693545 - MIR SINE MIR -17 245 123 25 0 0 0 chrX 22280659 22280684 -154693456 + AT_rich Low_complexity Low_complexity 1 25 0 185 315 22 11 chrX 22281613 22281702 -154692438 - MIR SINE MIR -54 208 119 434 86 0 0 chrX 22282975 22283033 -154691107 + L1P LINE L1 4895 4952 -1194 * 1506 231 22 66 chrX 22283029 22283528 -154690612 - L1ME3A LINE L1 -68 6102 5626 22 35 0 0 chrX 22283533 22283562 -154690578 + AT_rich Low_complexity Low_complexity 1 29 0 2304 180 11 7 chrX 22283583 22284022 -154690118 - L1MA6 LINE L1 -36 6264 5824 21 0 0 0 chrX 22284027 22284048 -154690092 + AT_rich Low_complexity Low_complexity 1 21 0 14416 185 32 15 chrX 22284048 22284955 -154689185 - L1MA2 LINE L1 0 7723 6833 354 98 0 0 chrX 22284955 22285006 -154689134 + (TA)n Simple_repeat Simple_repeat 2 52 0 14416 185 32 15 chrX 22285006 22288428 -154685712 - L1MA2 LINE L1 -890 6833 3305 18133 37 1 0 chrX 22288495 22291484 -154682656 - L1PA5 LINE L1 -2 6152 3161 458 99 0 12 chrX 22291485 22291566 -154682574 - L1M1 LINE L1 -5081 2484 2405 2218 98 21 0 chrX 22291566 22291903 -154682237 + L1M1 LINE L1 2473 2816 -4749 * 5137 199 20 3 chrX 22291895 22292836 -154681304 - L1MA2 LINE L1 -6042 1523 567 219 369 0 0 chrX 22293372 22293437 -154680703 - L2 LINE L2 -4 3309 3245 21 57 0 0 chrX 22293438 22293473 -154680667 + AT_rich Low_complexity Low_complexity 1 35 0 892 260 78 72 chrX 22293527 22294012 -154680128 - LTR16C LTR ERVL -3 488 1 284 341 87 61 chrX 22294704 22295008 -154679132 - MLT1K LTR MaLR -2 586 268 180 0 0 0 chrX 22295008 22295028 -154679112 + (CAA)n Simple_repeat Simple_repeat 2 21 0 284 341 87 61 chrX 22295028 22295116 -154679024 - MLT1K LTR MaLR -320 268 184 248 276 55 79 chrX 22295406 22295533 -154678607 + L2 LINE L2 1804 1927 -1387 658 241 36 91 chrX 22295542 22295795 -154678345 + MIR SINE MIR 24 262 0 317 379 61 29 chrX 22295813 22296370 -154677770 + L2 LINE L2 1954 3252 -20 24 32 0 0 chrX 22296449 22296480 -154677660 + AT_rich Low_complexity Low_complexity 1 31 0 2064 94 47 0 chrX 22297536 22297812 -154676328 - AluSg SINE Alu -21 289 1 991 286 110 18 chrX 22297923 22298315 -154675825 + LTR33 LTR ERVL 1 428 -93 2252 98 6 22 chrX 22298948 22299264 -154674876 + AluSq SINE Alu 1 311 -2 1372 273 46 37 chrX 22299278 22299733 -154674407 - LTR16C LTR ERVL 0 491 33 1390 156 92 50 chrX 22300307 22300589 -154673551 - AluJo SINE Alu -18 294 1 619 293 104 47 chrX 22301336 22301653 -154672487 - MLT1J2 LTR MaLR -3 447 113 556 320 89 5 chrX 22302686 22302889 -154671251 - MIR SINE MIR 0 262 43 22 70 0 0 chrX 22303762 22303805 -154670335 + AT_rich Low_complexity Low_complexity 1 43 0 2284 81 0 0 chrX 22303877 22304162 -154669978 + AluSg SINE Alu 1 285 -25 24 0 0 0 chrX 22305722 22305746 -154668394 + AT_rich Low_complexity Low_complexity 1 24 0 1917 154 20 0 chrX 22305900 22306206 -154667934 - AluSx SINE Alu 0 312 1 1519 265 42 49 chrX 22306214 22306762 -154667378 + L1MB7 LINE L1 94 637 -5905 728 208 58 10 chrX 22306758 22306965 -154667175 + L1MB7 LINE L1 1254 1470 -5072 * 5771 197 77 23 chrX 22306962 22308326 -154665814 + L1MB7 LINE L1 2974 4263 -2381 2277 90 0 0 chrX 22308326 22308626 -154665514 + AluY SINE Alu 1 300 -11 930 258 83 40 chrX 22308630 22309076 -154665064 + MLT1C LTR MaLR 3 467 0 5771 197 77 23 chrX 22309076 22310075 -154664065 + L1MB7 LINE L1 4265 5504 -1140 * 5903 130 20 11 chrX 22310072 22311061 -154663079 + L1MA7 LINE L1 5294 6291 0 32 67 0 0 chrX 22311061 22311121 -154663019 + AT_rich Low_complexity Low_complexity 1 60 0 3411 200 59 28 chrX 22311121 22311717 -154662423 + L1MB7 LINE L1 5492 6068 -614 1687 105 37 59 chrX 22311717 22312041 -154662099 - L1MA3 LINE L1 0 6305 5989 3411 200 59 28 chrX 22312041 22312575 -154661565 + L1MB7 LINE L1 6068 6659 -23 657 260 224 18 chrX 22313019 22313358 -154660782 - MLT1I LTR MaLR 0 409 1 467 352 0 14 chrX 22314386 22314531 -154659609 + MIR3 SINE MIR 10 152 -56 489 403 24 10 chrX 22314538 22314836 -154659304 - L2 LINE L2 -453 2861 2560 21 0 0 0 chrX 22314852 22314873 -154659267 + AT_rich Low_complexity Low_complexity 1 21 0 240 383 129 0 chrX 22314943 22315152 -154658988 - L2 LINE L2 -1165 2149 1914 511 269 107 81 chrX 22315282 22315580 -154658560 - MLT1H LTR MaLR -243 306 1 324 353 131 22 chrX 22315580 22315946 -154658194 - L2 LINE L2 -1417 1897 1492 1198 235 69 78 chrX 22316075 22316565 -154657575 - LTR33A LTR ERVL -31 492 7 251 225 28 28 chrX 22316772 22316843 -154657297 - MIR SINE MIR -57 151 81 222 62 0 0 chrX 22317223 22317255 -154656885 + (ATG)n Simple_repeat Simple_repeat 2 33 0 556 353 35 0 chrX 22317256 22317488 -154656652 - MIR SINE MIR -10 252 13 339 85 0 0 chrX 22317783 22317830 -154656310 + (CA)n Simple_repeat Simple_repeat 2 48 0 435 144 156 0 chrX 22318621 22318711 -154655429 - L1MA10 LINE L1 -4 6330 6227 30 59 0 0 chrX 22318798 22318849 -154655291 + AT_rich Low_complexity Low_complexity 1 51 0 2410 87 0 0 chrX 22319870 22320179 -154653961 - AluSg1 SINE Alu 0 309 1 336 300 0 0 chrX 22320243 22320343 -154653797 - L1ME LINE L1 -453 5668 5569 395 286 60 38 chrX 22322120 22322305 -154651835 + L2 LINE L2 3119 3307 -6 393 335 99 17 chrX 22323390 22323623 -154650517 + L2 LINE L2 2138 2389 -925 1635 165 113 22 chrX 22323648 22324011 -154650129 - MSTD LTR MaLR 0 396 1 831 194 129 5 chrX 22324011 22324212 -154649928 - MSTD-int LTR MaLR 0 1735 1510 920 70 86 0 chrX 22324315 22324443 -154649697 - MER85 DNA T2_type 0 139 1 2683 88 0 8 chrX 22324606 22324990 -154649150 - L1PA13 LINE L1 0 6163 5783 195 301 0 0 chrX 22326139 22326212 -154647928 + (TA)n Simple_repeat Simple_repeat 2 74 0 388 370 82 23 chrX 22326448 22326926 -154647214 + L2 LINE L2 1536 2041 -1273 242 273 0 0 chrX 22326949 22327004 -154647136 + MIR SINE MIR 194 248 -14 2334 258 87 27 chrX 22327035 22328060 -154646080 - L2 LINE L2 0 3313 2230 330 338 113 54 chrX 22328101 22328580 -154645560 + L2 LINE L2 2111 2617 -697 381 280 98 64 chrX 22328946 22329182 -154644958 + MARNA DNA Mariner 147 390 -196 1309 154 50 75 chrX 22329285 22329564 -154644576 + AluJo SINE Alu 11 282 -30 22 0 0 0 chrX 22329564 22329586 -154644554 + AT_rich Low_complexity Low_complexity 1 22 0 603 107 0 0 chrX 22329872 22329956 -154644184 + AluSg/x SINE Alu 211 294 -15 405 0 0 0 chrX 22330873 22330918 -154643222 + (T)n Simple_repeat Simple_repeat 1 45 0 30 27 0 0 chrX 22331129 22331166 -154642974 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chrX 22331232 22331254 -154642886 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 22331416 22331438 -154642702 + AT_rich Low_complexity Low_complexity 1 22 0 414 0 0 0 chrX 22331682 22331728 -154642412 + (T)n Simple_repeat Simple_repeat 1 46 0 930 283 54 7 chrX 22333066 22333342 -154640798 + L3 LINE CR1 559 847 -730 752 313 53 32 chrX 22333370 22333750 -154640390 - LTR16A LTR ERVL -6 444 57 723 251 26 37 chrX 22333786 22333977 -154640163 + MER5A DNA MER1_type 1 189 0 307 0 47 0 chrX 22334063 22334106 -154640034 + (CA)n Simple_repeat Simple_repeat 2 46 0 362 268 163 0 chrX 22334175 22334298 -154639842 + L3 LINE CR1 1339 1481 -96 220 347 80 0 chrX 22334633 22334708 -154639432 + L2 LINE L2 3188 3268 -4 237 330 54 0 chrX 22335875 22335987 -154638153 - MIR SINE MIR -73 135 18 188 316 88 0 chrX 22336420 22336477 -154637663 - L2 LINE L2 -23 3290 3229 2311 77 0 10 chrX 22338824 22339124 -154635016 - AluSg1 SINE Alu -9 300 4 2246 244 80 32 chrX 22340448 22341162 -154632978 - MER20B DNA MER1_type -2 781 34 927 339 39 6 chrX 22341718 22342081 -154632059 + L3 LINE CR1 399 773 -804 25 51 0 0 chrX 22342583 22342622 -154631518 + AT_rich Low_complexity Low_complexity 1 39 0 206 308 0 13 chrX 22343782 22343860 -154630280 + MIR SINE MIR 91 167 -95 2208 97 6 3 chrX 22343989 22344309 -154629831 - L1PA13 LINE L1 -3 6160 5840 1558 126 47 0 chrX 22344309 22344563 -154629577 - L1PA13 LINE L1 -577 5591 5326 24 0 0 0 chrX 22345778 22345802 -154628338 + AT_rich Low_complexity Low_complexity 1 24 0 337 280 10 10 chrX 22346404 22346504 -154627636 + MIR SINE MIR 45 144 -64 1449 217 6 97 chrX 22348620 22349094 -154625046 - LTR16A LTR ERVL -6 444 14 850 199 94 0 chrX 22349139 22349310 -154624830 - MER5A DNA MER1_type -2 187 1 275 271 0 0 chrX 22350519 22350589 -154623551 - MER116 DNA Mariner -8 72 3 243 0 0 0 chrX 22351405 22351432 -154622708 + (TA)n Simple_repeat Simple_repeat 2 28 0 291 235 130 52 chrX 22351630 22351745 -154622395 - MIR SINE MIR -66 142 19 33 0 0 0 chrX 22353985 22354018 -154620122 + AT_rich Low_complexity Low_complexity 1 33 0 2185 102 0 0 chrX 22354063 22354369 -154619771 + AluSx SINE Alu 1 306 0 252 222 0 0 chrX 22354823 22354877 -154619263 - MLT1J1 LTR MaLR -48 398 345 2200 58 7 4 chrX 22356790 22357097 -154617043 + AluSc SINE Alu 5 312 0 330 216 0 0 chrX 22357427 22357501 -154616639 + (TA)n Simple_repeat Simple_repeat 1 74 0 229 273 76 0 chrX 22357518 22357584 -154616556 - L2 LINE L2 -1 3271 3201 807 142 111 42 chrX 22357641 22357831 -154616309 - MLT1A2 LTR MaLR -48 326 124 313 234 43 60 chrX 22357866 22358012 -154616128 - MER112 DNA MER1_type -38 222 78 282 73 0 0 chrX 22358012 22358053 -154616087 + (TG)n Simple_repeat Simple_repeat 2 42 0 313 234 43 60 chrX 22358053 22358090 -154616050 - MER112 DNA MER1_type -182 78 42 238 360 0 72 chrX 22358109 22358220 -154615920 - L2 LINE L2 -88 3184 3082 269 354 0 0 chrX 22358420 22358502 -154615638 - L2 LINE L2 -263 3009 2928 244 313 218 28 chrX 22358599 22358810 -154615330 + MIR SINE MIR 1 251 -11 494 325 104 67 chrX 22358882 22359421 -154614719 - L2 LINE L2 -574 2740 2182 2312 97 0 0 chrX 22359634 22359934 -154614206 + AluSx SINE Alu 1 300 -12 221 394 16 16 chrX 22360276 22360403 -154613737 + L3b LINE CR1 1111 1237 -346 190 268 0 18 chrX 22360766 22360822 -154613318 + MIR SINE MIR 162 216 -46 25 51 0 0 chrX 22360931 22360970 -154613170 + AT_rich Low_complexity Low_complexity 1 39 0 332 281 26 9 chrX 22360991 22361105 -154613035 - MIR SINE MIR -55 207 92 272 270 251 42 chrX 22361250 22361396 -154612744 - MIR SINE MIR 0 262 148 1251 136 0 114 chrX 22361396 22361660 -154612480 - MER46A DNA MER2_type -2 234 1 272 270 251 42 chrX 22361660 22361728 -154612412 - MIR SINE MIR -114 148 3 4759 109 1 1 chrX 22362102 22362787 -154611353 - L1PA15 LINE L1 0 6165 5481 2302 97 3 0 chrX 22362787 22363096 -154611044 - AluSq SINE Alu -3 310 1 502 303 8 0 chrX 22363668 22363790 -154610350 + L2 LINE L2 3190 3312 -1 635 319 86 0 chrX 22364201 22364433 -154609707 + MIR SINE MIR 11 262 0 21 0 0 0 chrX 22365546 22365567 -154608573 + AT_rich Low_complexity Low_complexity 1 21 0 1263 281 157 16 chrX 22366728 22367218 -154606922 - MLT1G1 LTR MaLR 0 595 1 1526 195 34 40 chrX 22368035 22368472 -154605668 + L1MB3 LINE L1 5804 6298 -6 1339 184 36 0 chrX 22368489 22368739 -154605401 + AluJo SINE Alu 1 259 -53 319 113 0 0 chrX 22368760 22368813 -154605327 + L1MB4 LINE L1 6128 6180 0 199 340 100 0 chrX 22368938 22369038 -154605102 + MIR SINE MIR 38 147 -61 350 274 192 27 chrX 22369064 22369210 -154604930 + MER5A DNA MER1_type 19 188 -1 307 195 41 0 chrX 22370198 22370321 -154603819 + GA-rich Low_complexity Low_complexity 2 129 0 216 67 0 0 chrX 22370811 22370841 -154603299 + (CA)n Simple_repeat Simple_repeat 2 31 0 540 252 75 75 chrX 22371432 22371710 -154602430 + MLT1H LTR MaLR 39 316 -233 2107 110 51 46 chrX 22374033 22374406 -154599734 - THE1C LTR MaLR 0 375 1 206 239 134 30 chrX 22375954 22376021 -154598119 - MIR3 SINE MIR -10 198 125 301 207 64 74 chrX 22377031 22377158 -154596982 - MLT1G1 LTR MaLR -2 580 426 280 264 44 22 chrX 22377317 22377408 -154596732 - MLT1H LTR MaLR -375 174 82 949 269 76 66 chrX 22379313 22379799 -154594341 - LTR33 LTR ERVL -4 517 27 216 0 0 0 chrX 22379813 22379837 -154594303 + (A)n Simple_repeat Simple_repeat 1 24 0 1873 151 7 7 chrX 22380119 22380417 -154593723 + AluJb SINE Alu 5 302 -10 336 227 15 0 chrX 22380887 22380953 -154593187 - L2 LINE L2 -1 3312 3246 1662 155 0 67 chrX 22381922 22382238 -154591902 + AluJo SINE Alu 1 295 -17 509 206 157 94 chrX 22383032 22383255 -154590885 + L2 LINE L2 3075 3311 -2 512 196 312 0 chrX 22383376 22383514 -154590626 - MER5A DNA MER1_type 0 189 9 182 203 81 68 chrX 22383769 22383843 -154590297 - MIR3 SINE MIR -53 155 81 933 218 22 53 chrX 22386052 22386277 -154587863 + MER20 DNA MER1_type 1 218 -1 364 284 0 10 chrX 22386904 22387006 -154587134 - MER5B DNA MER1_type -72 106 6 373 279 44 44 chrX 22387034 22387170 -154586970 + MIR SINE MIR 29 164 -98 253 82 41 0 chrX 22387941 22387990 -154586150 + (TA)n Simple_repeat Simple_repeat 1 51 0 235 143 0 36 chrX 22387992 22388048 -154586092 + Charlie5 DNA MER1_type 2501 2554 -58 353 306 84 84 chrX 22388148 22388423 -154585717 - L2 LINE L2 -17 3255 2981 1544 172 56 0 chrX 22389069 22389371 -154584769 - MER33 DNA MER1_type 0 324 6 22 0 0 0 chrX 22390231 22390253 -154583887 + AT_rich Low_complexity Low_complexity 1 22 0 705 188 7 0 chrX 22390433 22390571 -154583569 - L1PB4 LINE L1 -3 6153 6015 225 325 165 34 chrX 22391242 22391448 -154582692 - L2 LINE L2 -540 2774 2542 1742 222 20 96 chrX 22391655 22392205 -154581935 - MER74B LTR ERVL -59 563 56 662 224 44 11 chrX 22392233 22392416 -154581724 - MER5A DNA MER1_type 0 189 1 310 325 89 46 chrX 22392417 22392719 -154581421 - L2 LINE L2 -962 2352 2038 1581 114 42 4 chrX 22392880 22393144 -154580996 - L1MA8 LINE L1 -6 6285 6012 908 60 46 7 chrX 22393306 22393457 -154580683 + L1PA10 LINE L1 5911 6067 -101 3569 35 0 0 chrX 22393457 22393890 -154580250 + L1PA4 LINE L1 5717 6149 -6 570 179 32 16 chrX 22393899 22394022 -154580118 + L1PA3 LINE L1 6028 6152 -3 282 311 68 47 chrX 22394186 22394507 -154579633 + L2 LINE L2 1989 2316 -998 301 365 139 5 chrX 22394623 22394831 -154579309 + L2 LINE L2 2323 2558 -756 236 319 129 37 chrX 22394893 22395056 -154579084 + MIR SINE MIR 84 261 -1 227 319 198 39 chrX 22395056 22395288 -154578852 + L2 LINE L2 2589 2857 -457 676 0 0 0 chrX 22395540 22395618 -154578522 - L1PA3 LINE L1 -3 6152 6075 187 327 36 0 chrX 22396689 22396744 -154577396 - L2 LINE L2 -2 3270 3214 183 80 0 0 chrX 22396827 22396852 -154577288 + (GA)n Simple_repeat Simple_repeat 2 26 0 363 284 90 8 chrX 22397072 22397206 -154576934 - MLT1H LTR MaLR -23 526 382 1995 178 80 45 chrX 22397415 22397903 -154576237 + MLT1D LTR MaLR 1 505 0 277 172 0 0 chrX 22397921 22397979 -154576161 + MER113 DNA MER1_type? 55 112 -409 375 251 92 46 chrX 22399263 22399443 -154574697 + MIR3 SINE MIR 11 194 -63 1696 82 133 4 chrX 22400639 22400894 -154573246 + AluSg1 SINE Alu 1 288 -21 21 0 0 0 chrX 22401400 22401421 -154572719 + AT_rich Low_complexity Low_complexity 1 21 0 841 206 32 9 chrX 22401422 22401640 -154572500 + L1MD3 LINE L1 7773 7995 0 2429 87 0 0 chrX 22403205 22403516 -154570624 + AluY SINE Alu 1 311 0 433 280 129 24 chrX 22403545 22403763 -154570377 + MIR SINE MIR 17 253 -9 315 337 70 43 chrX 22404652 22404839 -154569301 + HAL1 LINE L1 51 242 -2265 912 287 26 51 chrX 22404889 22405241 -154568899 - LTR16C LTR ERVL -105 386 44 1029 103 0 6 chrX 22405498 22405654 -154568486 - L1PA14 LINE L1 -2 6159 6005 1168 199 14 0 chrX 22405756 22405972 -154568168 + MER20 DNA MER1_type 1 219 0 450 191 106 0 chrX 22405994 22406088 -154568052 + MER3 DNA MER1_type 16 119 -90 229 274 39 0 chrX 22406132 22406183 -154567957 - L2 LINE L2 -86 3186 3134 21 36 0 0 chrX 22406183 22406211 -154567929 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chrX 22406352 22406392 -154567748 + (CA)n Simple_repeat Simple_repeat 2 41 0 229 218 103 58 chrX 22407147 22407234 -154566906 + MLT1F1 LTR MaLR 35 125 -442 2126 204 20 6 chrX 22407234 22407728 -154566412 + L1MD3 LINE L1 7410 7910 -85 518 229 6 25 chrX 22407817 22407974 -154566166 - LTR37A LTR ERV1 -5 421 268 336 275 0 11 chrX 22407989 22408080 -154566060 + L1MC4 LINE L1 6614 6703 -1339 * 344 169 135 22 chrX 22408005 22408094 -154566046 - L1MC4 LINE L1 -1339 6703 6605 378 173 49 0 chrX 22408328 22408409 -154565731 + L1MD1 LINE L1 1911 1995 -4545 368 283 99 0 chrX 22408550 22408702 -154565438 + LTR40b LTR ERVL 194 360 -102 307 287 11 11 chrX 22408715 22408802 -154565338 + L1MD1 LINE L1 3364 3450 -3090 4586 209 35 59 chrX 22408802 22409438 -154564702 + L1MD1 LINE L1 4109 4759 -1877 338 206 0 0 chrX 22409438 22409506 -154564634 - MER47A DNA MER2_type 0 366 299 4586 209 35 59 chrX 22409506 22411396 -154562744 + L1MD1 LINE L1 4759 6636 0 225 307 53 13 chrX 22411424 22411499 -154562641 - MIR3 SINE MIR -35 173 96 206 196 18 18 chrX 22412011 22412067 -154562073 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 381 269 51 46 chrX 22412069 22412167 -154561973 - L1MC4 LINE L1 -1882 5926 5830 2466 150 58 16 chrX 22412167 22412615 -154561525 - MLT1C LTR MaLR 0 467 1 381 269 51 46 chrX 22412615 22412713 -154561427 - L1MC4 LINE L1 -1978 5830 5729 371 311 8 0 chrX 22412952 22413074 -154561066 + L1MC/D LINE L1 4712 4834 -1312 2303 75 18 0 chrX 22413088 22413398 -154560742 + AluSq SINE Alu 1 315 0 524 298 66 52 chrX 22413743 22414259 -154559881 + L1MC/D LINE L1 5257 5779 -2029 22 35 0 0 chrX 22414379 22414408 -154559732 + AT_rich Low_complexity Low_complexity 1 29 0 2176 124 8 6 chrX 22415421 22415783 -154558357 - Tigger2 DNA MER2_type 0 2718 2356 274 325 26 0 chrX 22416160 22416237 -154557903 + MER5A DNA MER1_type 34 112 -77 227 186 0 0 chrX 22416673 22416716 -154557424 - Tigger2 DNA MER2_type -10 2708 2666 2686 23 3 0 chrX 22416784 22417088 -154557052 - AluY SINE Alu -5 306 2 260 169 0 17 chrX 22418060 22418119 -154556021 + (TA)n Simple_repeat Simple_repeat 1 58 0 358 248 215 13 chrX 22418246 22418395 -154555745 + MER5A DNA MER1_type 11 189 0 429 318 53 0 chrX 22419112 22419244 -154554896 - L2 LINE L2 -5 3267 3129 23 0 0 0 chrX 22419931 22419954 -154554186 + AT_rich Low_complexity Low_complexity 1 23 0 2426 85 0 0 chrX 22420359 22420665 -154553475 - AluY SINE Alu -5 306 1 22 0 0 0 chrX 22420665 22420687 -154553453 + AT_rich Low_complexity Low_complexity 1 22 0 722 229 23 23 chrX 22421450 22421625 -154552515 - MER63A DNA MER1_type -34 176 2 205 208 0 21 chrX 22422017 22422065 -154552075 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 29 0 0 0 chrX 22422130 22422159 -154551981 + AT_rich Low_complexity Low_complexity 1 29 0 487 223 123 0 chrX 22422383 22422513 -154551627 + MER5B DNA MER1_type 25 170 -8 1031 153 0 47 chrX 22424279 22424475 -154549665 - AluJo SINE Alu 0 329 140 1826 80 0 0 chrX 22424475 22424699 -154549441 - AluSg/x SINE Alu -16 294 71 1031 153 0 47 chrX 22424699 22424719 -154549421 - AluJo SINE Alu -189 140 121 672 205 0 8 chrX 22424740 22424862 -154549278 - AluJo SINE Alu -191 121 1 337 162 54 40 chrX 22424864 22424938 -154549202 - MER94 DNA DNA -59 75 1 195 273 91 0 chrX 22425103 22425158 -154548982 - L2 LINE L2 -19 3294 3235 324 202 21 11 chrX 22426212 22426306 -154547834 + MER53 DNA DNA 95 189 0 1815 162 0 17 chrX 22426588 22426884 -154547256 - AluJb SINE Alu -21 291 1 22836 31 0 0 chrX 22429699 22432591 -154541549 - L1P LINE L1 -2026 4120 1228 7390 20 0 1 chrX 22432591 22433643 -154540497 + L1HS LINE L1 5105 6155 0 189 0 0 0 chrX 22433648 22433669 -154540471 + (A)n Simple_repeat Simple_repeat 1 21 0 306 341 23 39 chrX 22433800 22433929 -154540211 - L2 LINE L2 -2 3270 3144 8583 21 2 0 chrX 22434735 22435786 -154538354 + L1P LINE L1 4090 5142 -1004 221 179 0 0 chrX 22435941 22435980 -154538160 - L2 LINE L2 -63 3209 3171 1055 308 66 62 chrX 22436687 22437669 -154536471 + L2 LINE L2 1304 2289 -1025 192 302 31 62 chrX 22437676 22437772 -154536368 + L2 LINE L2 2576 2668 -646 * 343 312 33 65 chrX 22437745 22437960 -154536180 + L2 LINE L2 2871 3078 -194 789 235 33 0 chrX 22438205 22438388 -154535752 - MER5A DNA MER1_type 0 189 1 249 33 0 0 chrX 22438484 22438514 -154535626 + (CTA)n Simple_repeat Simple_repeat 3 32 0 372 297 115 14 chrX 22438568 22438716 -154535424 - MIR SINE MIR -82 180 18 1814 193 0 0 chrX 22438957 22439253 -154534887 + AluJb SINE Alu 1 296 -16 613 248 68 61 chrX 22440033 22440232 -154533908 + LTR16C LTR ERVL 144 347 -144 2296 100 7 0 chrX 22440232 22440531 -154533609 - AluSx SINE Alu -11 301 1 613 248 68 61 chrX 22440531 22440609 -154533531 + LTR16C LTR ERVL 347 423 -68 857 162 7 0 chrX 22442831 22442973 -154531167 + FLAM_C SINE Alu 1 143 0 626 262 33 22 chrX 22443153 22443336 -154530804 - MER5A DNA MER1_type -4 185 1 214 322 28 55 chrX 22443366 22443512 -154530628 + MIR3 SINE MIR 17 160 -48 206 32 32 0 chrX 22444602 22444633 -154529507 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 209 237 13 66 chrX 22445274 22445350 -154528790 + MIR SINE MIR 181 252 -10 475 285 62 0 chrX 22445576 22445706 -154528434 + MIR SINE MIR 107 244 -18 485 261 36 0 chrX 22446712 22446850 -154527290 - MER39 LTR ERV1 -3 704 562 402 216 121 60 chrX 22446963 22447162 -154526978 - MER39 LTR ERV1 -172 535 325 2065 105 49 7 chrX 22447267 22447553 -154526587 - AluSg SINE Alu -12 298 1 262 125 0 21 chrX 22448005 22448053 -154526087 - MLT1J LTR MaLR -52 459 413 2174 103 10 6 chrX 22448139 22448450 -154525690 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 22448450 22448473 -154525667 + AT_rich Low_complexity Low_complexity 1 23 0 358 310 17 0 chrX 22448601 22448717 -154525423 - MLT1J2 LTR MaLR -318 132 15 662 260 101 36 chrX 22449039 22449258 -154524882 - MIR SINE MIR -27 235 3 326 356 54 7 chrX 22449274 22449423 -154524717 + L2 LINE L2 2936 3091 -181 1372 166 91 40 chrX 22449542 22449799 -154524341 - Charlie5 DNA MER1_type 0 2624 2341 3776 57 2 0 chrX 22449799 22450271 -154523869 + L1PA5 LINE L1 5682 6154 0 1372 166 91 40 chrX 22450271 22450386 -154523754 - Charlie5 DNA MER1_type -283 2341 2233 469 222 0 32 chrX 22450393 22450519 -154523621 - MER3 DNA MER1_type -87 122 48 402 307 8 39 chrX 22451691 22451818 -154522322 + L2 LINE L2 3172 3294 -19 355 336 148 0 chrX 22452235 22452357 -154521783 + MIR3 SINE MIR 20 159 -49 337 267 12 0 chrX 22452438 22452524 -154521616 - MER117 DNA MER1_type -109 88 2 322 267 267 0 chrX 22452680 22452785 -154521355 - MER91C DNA MER1_type 0 140 8 321 340 75 34 chrX 22453097 22453244 -154520896 - L2 LINE L2 0 3313 3161 2220 170 30 2 chrX 22453247 22453647 -154520493 + Tigger4(Zombi) DNA MER2_type 1 411 -2320 1076 202 0 0 chrX 22454573 22454756 -154519384 + MER5A DNA MER1_type 7 189 0 183 42 0 0 chrX 22455374 22455398 -154518742 + (TA)n Simple_repeat Simple_repeat 1 24 0 217 326 21 11 chrX 22455540 22455635 -154518505 + L2 LINE L2 2934 3029 -243 1360 149 42 4 chrX 22456244 22456506 -154517634 - L1MA8 LINE L1 -8 6283 6012 234 250 0 0 chrX 22456552 22456604 -154517536 - MARNA DNA Mariner -97 489 438 740 274 17 17 chrX 22457581 22457756 -154516384 - MER5A DNA MER1_type -13 176 2 188 79 53 0 chrX 22457759 22457797 -154516343 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 438 248 27 0 chrX 22457854 22457966 -154516174 - MER5A DNA MER1_type -74 104 2 22 0 0 0 chrX 22458199 22458221 -154515919 + AT_rich Low_complexity Low_complexity 1 22 0 1457 132 4 18 chrX 22458358 22458586 -154515554 - AluJb SINE Alu -4 308 84 2285 97 0 13 chrX 22458974 22459273 -154514867 + AluSq SINE Alu 3 297 -16 2543 49 0 3 chrX 22459455 22459760 -154514380 + AluY SINE Alu 1 304 -7 1803 122 83 47 chrX 22459884 22460246 -154513894 - THE1C LTR MaLR 0 375 1 320 282 71 31 chrX 22461574 22461716 -154512424 + MIR SINE MIR 40 185 -77 414 0 0 0 chrX 22462470 22462516 -154511624 + (TG)n Simple_repeat Simple_repeat 2 47 0 181 390 53 22 chrX 22462714 22463037 -154511103 + L2 LINE L2 2560 2892 -422 264 303 9 73 chrX 22463140 22463249 -154510891 - MIR SINE MIR -9 253 152 502 163 226 37 chrX 22464145 22464335 -154509805 - MER5C DNA MER1_type -35 289 64 205 348 127 17 chrX 22465753 22465934 -154508206 - MIR SINE MIR -13 249 49 917 255 31 12 chrX 22466443 22466698 -154507442 + MIR SINE MIR 3 262 0 11204 24 0 1 chrX 22467018 22469123 -154505017 + L1PA3 LINE L1 4072 6174 0 327 49 0 0 chrX 22469157 22469198 -154504942 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 2537 60 0 7 chrX 22469627 22469929 -154504211 + AluY SINE Alu 1 300 -11 405 316 25 32 chrX 22470105 22470317 -154503823 + MIR SINE MIR 1 212 -50 745 229 33 84 chrX 22474285 22474504 -154499636 - MIR SINE MIR -1 261 57 2514 71 0 3 chrX 22474504 22474814 -154499326 + AluSc SINE Alu 1 309 0 745 229 33 84 chrX 22474814 22474869 -154499271 - MIR SINE MIR -205 57 1 180 0 0 0 chrX 22475021 22475041 -154499099 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 590 203 8 41 chrX 22476357 22476480 -154497660 - L2 LINE L2 0 3313 3195 473 316 19 58 chrX 22476947 22477153 -154496987 + MIR3 SINE MIR 6 203 -5 1505 167 14 0 chrX 22478242 22478536 -154495604 - L1 LINE L1 -1080 5066 4769 891 217 20 117 chrX 22479085 22479486 -154494654 - MER57A LTR ERV1 0 403 42 336 320 58 10 chrX 22479634 22479737 -154494403 + MIR3 SINE MIR 99 206 -2 232 248 40 84 chrX 22480100 22480226 -154493914 - MER5B DNA MER1_type -37 152 4 2226 118 3 3 chrX 22480642 22480948 -154493192 + AluSx SINE Alu 1 306 -6 24726 124 10 71 chrX 22481321 22486212 -154487928 - L1P LINE L1 -1545 4601 12 2182 79 13 44 chrX 22487681 22487997 -154486143 + AluSx SINE Alu 3 308 -4 2261 64 4 4 chrX 22488043 22488347 -154485793 + AluSc SINE Alu 1 304 0 181 292 62 0 chrX 22488542 22488590 -154485550 + MIR SINE MIR 76 126 -136 274 250 69 0 chrX 22489577 22489649 -154484491 + L2 LINE L2 3196 3272 0 2467 45 0 0 chrX 22490188 22490474 -154483666 + AluY SINE Alu 1 286 -25 26 64 0 0 chrX 22490474 22490521 -154483619 + AT_rich Low_complexity Low_complexity 1 47 0 2132 126 0 16 chrX 22491106 22491423 -154482717 + AluSx SINE Alu 1 312 0 5503 115 33 5 chrX 22492322 22493766 -154480374 - HERVH LTR ERV1 -5983 1730 1 3375 58 7 13 chrX 22493768 22494219 -154479921 - LTR7 LTR ERV1 -2 448 1 777 259 41 0 chrX 22494219 22494389 -154479751 - MIR SINE MIR -84 178 2 761 316 76 10 chrX 22494442 22494743 -154479397 - L3 LINE CR1 -4 1573 1253 1788 134 22 9 chrX 22496059 22496379 -154477761 - L1MB2 LINE L1 -1 6170 5847 493 280 51 64 chrX 22496516 22496744 -154477396 - LTR16A LTR ERVL -22 428 205 655 85 108 46 chrX 22496744 22496874 -154477266 + MER85 DNA T2_type 1 138 -1 493 280 51 64 chrX 22496874 22497077 -154477063 - LTR16A LTR ERVL -245 205 1 12106 26 7 1 chrX 22497111 22499343 -154474797 - L1PA3 LINE L1 0 6155 3915 182 255 0 78 chrX 22499690 22499741 -154474399 + L2 LINE L2 3261 3307 -6 2221 103 7 10 chrX 22500521 22500822 -154473318 - AluSx SINE Alu -12 300 1 293 306 43 24 chrX 22500867 22501013 -154473127 + MIR SINE MIR 15 164 -44 2204 96 0 0 chrX 22501563 22501868 -154472272 - AluSx SINE Alu 0 307 3 489 331 50 11 chrX 22502586 22502767 -154471373 - MIR3 SINE MIR -5 203 16 262 246 43 0 chrX 22503683 22503752 -154470388 - MIR SINE MIR -119 143 72 524 294 10 36 chrX 22503800 22503994 -154470146 - MIR SINE MIR -3 259 71 1789 180 109 0 chrX 22504264 22504648 -154469492 + MSTB1 LTR MaLR 7 432 0 2155 81 14 20 chrX 22504927 22505222 -154468918 + AluSx SINE Alu 12 304 -8 400 154 26 0 chrX 22505224 22505302 -154468838 - L1MB3 LINE L1 -167 6016 5937 * 731 181 0 0 chrX 22505301 22505445 -154468695 - L1MB3 LINE L1 -776 5370 5227 2247 110 0 0 chrX 22505772 22506071 -154468069 - AluSq SINE Alu -12 301 3 2262 104 10 0 chrX 22506792 22507239 -154466901 + AluSq SINE Alu 1 450 0 866 286 86 8 chrX 22507344 22507704 -154466436 + LTR16A1 LTR ERVL 2 389 -68 396 133 0 0 chrX 22508524 22508607 -154465533 + (TA)n Simple_repeat Simple_repeat 1 83 0 623 357 59 0 chrX 22508786 22509108 -154465032 + L2 LINE L2 1002 1342 -1972 2099 108 3 37 chrX 22510325 22510648 -154463492 - AluSx SINE Alu 0 312 1 6788 50 34 0 chrX 22510811 22512176 -154461964 + L1PA7 LINE L1 4739 6154 0 24 0 0 0 chrX 22513733 22513757 -154460383 + AT_rich Low_complexity Low_complexity 1 24 0 540 270 11 11 chrX 22514665 22514839 -154459301 - LTR16A1 LTR ERVL -2 455 282 2148 94 30 7 chrX 22514888 22515185 -154458955 - AluSq SINE Alu -9 304 1 609 259 93 5 chrX 22515219 22515412 -154458728 + MER63A DNA MER1_type 1 210 0 338 261 29 36 chrX 22515412 22515544 -154458596 - LTR16A1 LTR ERVL -276 181 51 783 210 57 0 chrX 22515916 22516092 -154458048 - MER5A DNA MER1_type 0 189 4 23 54 0 0 chrX 22516168 22516205 -154457935 + AT_rich Low_complexity Low_complexity 1 37 0 1841 162 3 0 chrX 22516500 22516784 -154457356 + AluJb SINE Alu 1 285 -27 197 344 125 10 chrX 22517453 22517549 -154456591 - L2 LINE L2 -27 3245 3139 470 355 47 0 chrX 22517611 22517822 -154456318 - MIR SINE MIR -34 228 8 4779 182 42 2 chrX 22518410 22519526 -154454614 - L1MD1 LINE L1 -28 6214 5037 1708 71 0 0 chrX 22519526 22519738 -154454402 - AluY SINE Alu -9 302 91 4779 182 42 2 chrX 22519738 22519885 -154454255 - L1MD1 LINE L1 -1205 5037 4897 548 342 71 43 chrX 22519914 22520376 -154453764 + L2 LINE L2 2257 2731 -583 2365 89 0 0 chrX 22520700 22520992 -154453148 + AluSx SINE Alu 1 292 -20 954 125 5 26 chrX 22522024 22522240 -154451900 - MER4A LTR ERV1 -134 530 261 650 111 0 10 chrX 22522240 22522339 -154451801 - MER4A LTR ERV1 -566 98 1 227 339 0 0 chrX 22522339 22522401 -154451739 - L3 LINE CR1 -472 1105 1044 1660 188 138 95 chrX 22522847 22523555 -154450585 + LTR1B LTR ERV1 7 745 -81 997 193 6 0 chrX 22523641 22523807 -154450333 + FAM SINE Alu 5 171 -4 872 157 0 0 chrX 22523865 22523986 -154450154 + FLAM_C SINE Alu 1 121 -22 587 233 28 107 chrX 22524202 22524417 -154449723 + MIR SINE MIR 48 245 -17 682 224 12 0 chrX 22525436 22525606 -154448534 - AluSx SINE Alu -134 178 7 343 322 10 58 chrX 22526026 22526234 -154447906 + MIR3 SINE MIR 1 198 -10 211 219 24 0 chrX 22526338 22526379 -154447761 + L2 LINE L2 3266 3307 -6 1168 136 48 44 chrX 22527329 22527378 -154446762 - L1MB1 LINE L1 0 6168 6121 1912 45 0 41 chrX 22527378 22527621 -154446519 - AluY SINE Alu -15 296 64 1168 136 48 44 chrX 22527621 22527799 -154446341 - L1MB1 LINE L1 -47 6121 5940 1099 295 58 59 chrX 22528581 22529170 -154444970 + L2 LINE L2 2338 2925 -389 649 323 136 3 chrX 22529564 22529880 -154444260 + L3 LINE CR1 1207 1564 -13 243 267 47 23 chrX 22529959 22530045 -154444095 + MIR3 SINE MIR 115 202 -6 672 261 113 0 chrX 22530209 22530404 -154443736 - MIR SINE MIR -6 256 40 465 279 78 25 chrX 22530408 22530612 -154443528 - MER58C DNA MER1_type 0 215 1 497 250 111 17 chrX 22530651 22530831 -154443309 - MIR SINE MIR -7 255 59 429 335 57 11 chrX 22531130 22531306 -154442834 + MIR3 SINE MIR 11 194 -14 180 0 0 0 chrX 22533814 22533834 -154440306 + (T)n Simple_repeat Simple_repeat 1 20 0 521 231 50 0 chrX 22534878 22534999 -154439141 + L2 LINE L2 3187 3313 0 369 0 0 0 chrX 22535478 22535519 -154438621 + (CA)n Simple_repeat Simple_repeat 2 42 0 2417 76 7 0 chrX 22535976 22536280 -154437860 - AluSc SINE Alu -3 306 1 994 208 23 14 chrX 22536301 22536517 -154437623 - MER20 DNA MER1_type 0 219 2 288 250 170 18 chrX 22536731 22536843 -154437297 + LTR16B LTR ERVL 323 451 -13 280 145 43 29 chrX 22537068 22537137 -154437003 + MLT1K LTR MaLR 519 588 0 2415 70 7 0 chrX 22537420 22537721 -154436419 + AluY SINE Alu 1 303 -8 189 0 0 0 chrX 22539134 22539155 -154434985 + (A)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chrX 22539201 22539227 -154434913 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chrX 22540320 22540344 -154433796 + (A)n Simple_repeat Simple_repeat 1 24 0 2579 13 7 3 chrX 22540458 22540756 -154433384 + AluY SINE Alu 1 299 -12 228 266 0 16 chrX 22541297 22541361 -154432779 - MLT1L LTR MaLR -348 267 205 275 49 24 0 chrX 22541930 22541971 -154432169 + (TC)n Simple_repeat Simple_repeat 1 42 0 2195 114 0 0 chrX 22542091 22542381 -154431759 - AluSx SINE Alu -22 290 1 1307 308 196 20 chrX 22542914 22543805 -154430335 - L2 LINE L2 -256 3057 2001 197 352 24 32 chrX 22544304 22544429 -154429711 - MIR3 SINE MIR -31 177 54 292 355 10 25 chrX 22544479 22544676 -154429464 + MER117 DNA MER1_type 3 196 -1 324 215 0 0 chrX 22544940 22545005 -154429135 + L1MD3 LINE L1 7899 7963 -32 2291 92 0 0 chrX 22545057 22545365 -154428775 - AluSx SINE Alu 0 308 1 206 359 19 10 chrX 22545365 22545468 -154428672 + MIR3 SINE MIR 101 204 -4 1081 268 45 42 chrX 22545552 22545679 -154428461 - L2 LINE L2 -11 3302 3177 2304 82 6 22 chrX 22545679 22545995 -154428145 + AluY SINE Alu 1 311 0 1081 268 45 42 chrX 22545995 22546248 -154427892 - L2 LINE L2 -136 3177 2921 2200 123 0 0 chrX 22546280 22546580 -154427560 + AluSx SINE Alu 1 300 -12 413 256 128 30 chrX 22546596 22546729 -154427411 - MIR3 SINE MIR -42 166 21 394 319 86 0 chrX 22547296 22547412 -154426728 - L2 LINE L2 -2 3270 3145 6079 40 5 4 chrX 22547588 22548331 -154425809 - L1PA5 LINE L1 0 6154 5411 605 121 0 0 chrX 22548354 22548445 -154425695 + L1MA1 LINE L1 6209 6299 -3 510 154 36 9 chrX 22549784 22549894 -154424246 - AluSg SINE Alu -197 113 1 197 213 75 100 chrX 22550415 22550495 -154423645 + MIR3 SINE MIR 15 92 -116 22 56 0 0 chrX 22550646 22550682 -154423458 + AT_rich Low_complexity Low_complexity 1 36 0 3489 131 21 4 chrX 22550684 22551226 -154422914 - L1PA16 LINE L1 -9 6157 5603 2417 99 0 6 chrX 22551226 22551540 -154422600 - AluSx SINE Alu 0 312 1 3489 131 21 4 chrX 22551540 22551555 -154422585 - L1PA16 LINE L1 -563 5603 5590 426 293 111 33 chrX 22551721 22551902 -154422238 - L2 LINE L2 0 3313 3119 504 0 0 0 chrX 22552200 22552256 -154421884 + (CA)n Simple_repeat Simple_repeat 1 56 0 1062 72 0 0 chrX 22553428 22553567 -154420573 + L1PA14 LINE L1 6021 6159 -2 231 114 0 0 chrX 22553701 22553736 -154420404 + (TAA)n Simple_repeat Simple_repeat 2 36 0 357 276 141 19 chrX 22553794 22553950 -154420190 - MIR SINE MIR -74 188 14 2231 99 0 3 chrX 22554316 22554629 -154419511 - AluSq SINE Alu 0 312 1 2392 74 0 29 chrX 22554630 22554940 -154419200 - AluY SINE Alu -7 304 4 21 0 0 0 chrX 22555102 22555123 -154419017 + AT_rich Low_complexity Low_complexity 1 21 0 222 275 77 22 chrX 22555747 22555838 -154418302 + MIR SINE MIR 118 213 -49 462 340 104 5 chrX 22555935 22556147 -154417993 + MIR SINE MIR 27 259 -3 2387 94 0 3 chrX 22556243 22556552 -154417588 - AluSg SINE Alu -2 308 1 472 310 56 29 chrX 22557360 22557686 -154416454 - MLT1L LTR MaLR -73 542 109 234 0 0 0 chrX 22558374 22558400 -154415740 + (A)n Simple_repeat Simple_repeat 1 26 0 810 147 0 7 chrX 22559223 22559366 -154414774 - L1MB7 LINE L1 -16 6168 6027 324 281 29 88 chrX 22560235 22560509 -154413631 + MIR SINE MIR 5 262 0 1624 137 82 85 chrX 22560557 22560923 -154413217 - MLT1A1 LTR MaLR 0 365 1 1582 100 14 5 chrX 22561536 22561756 -154412384 + AluSg/x SINE Alu 81 302 -10 805 154 0 31 chrX 22562422 22562552 -154411588 - FLAM_A SINE Alu -7 126 1 262 307 27 0 chrX 22562572 22562647 -154411493 - MIR SINE MIR 0 262 186 489 127 13 0 chrX 22563027 22563106 -154411034 + MADE1 DNA Mariner 1 80 0 30 0 0 0 chrX 22563273 22563303 -154410837 + AT_rich Low_complexity Low_complexity 1 30 0 305 168 19 0 chrX 22563693 22563767 -154410373 + MIR SINE MIR 102 176 -86 * 549 260 33 13 chrX 22563765 22563915 -154410225 - L2 LINE L2 -1 3312 3160 313 247 13 0 chrX 22563895 22563972 -154410168 + MIR SINE MIR 185 262 0 * 268 253 130 62 chrX 22563984 22564130 -154410010 - MIR SINE MIR -99 163 8 283 277 24 24 chrX 22564141 22564224 -154409916 + MER5B DNA MER1_type 13 95 -83 440 178 31 147 chrX 22564392 22564521 -154409619 - MER81 DNA DNA 0 114 1 1755 212 164 20 chrX 22565145 22565764 -154408376 + LTR68 LTR ERV1 1 740 0 431 368 51 63 chrX 22565764 22566615 -154407525 + L2 LINE L2 2405 3252 -20 767 100 0 0 chrX 22568869 22568979 -154405161 + AluSp/q SINE Alu 178 287 -26 2330 89 10 0 chrX 22569292 22569596 -154404544 + AluY SINE Alu 3 309 -2 280 309 88 55 chrX 22570188 22570369 -154403771 + MLT1L LTR MaLR 91 277 -338 365 295 30 77 chrX 22570384 22570618 -154403522 + L2 LINE L2 2912 3134 -179 2135 131 6 10 chrX 22571834 22572146 -154401994 + AluSx SINE Alu 1 311 -1 250 336 68 27 chrX 22572321 22572467 -154401673 + L3 LINE CR1 412 563 -1014 537 129 0 32 chrX 22572630 22572723 -154401417 - AluJ/FLAM SINE Alu -222 90 1 489 296 116 59 chrX 22572723 22573095 -154401045 + L2 LINE L2 2912 3304 -9 255 346 19 29 chrX 22573542 22573646 -154400494 + MER91A DNA MER1_type 72 174 -22 219 69 0 0 chrX 22573693 22573722 -154400418 + (TC)n Simple_repeat Simple_repeat 2 30 0 420 206 120 124 chrX 22574073 22574309 -154399831 + MLT1F LTR MaLR 292 513 -29 2296 81 3 7 chrX 22574393 22574689 -154399451 - AluSg SINE Alu -15 295 1 456 192 120 32 chrX 22574705 22574830 -154399310 + L2 LINE L2 3178 3313 0 339 283 65 0 chrX 22574877 22574969 -154399171 + MLT1L LTR MaLR 419 516 -99 2237 166 27 7 chrX 22575019 22575422 -154398718 - MSTB LTR MaLR -15 411 1 1907 91 24 44 chrX 22576196 22576492 -154397648 + AluSx SINE Alu 23 312 0 315 0 0 0 chrX 22579081 22579116 -154395024 + (TG)n Simple_repeat Simple_repeat 2 36 0 1087 139 0 6 chrX 22579289 22579454 -154394686 + FRAM SINE Alu 11 174 -2 602 256 25 19 chrX 22579472 22579632 -154394508 + MER5A DNA MER1_type 29 189 0 2231 94 0 10 chrX 22579758 22580056 -154394084 + AluSq SINE Alu 4 298 -15 207 263 0 18 chrX 22581514 22581571 -154392569 + G-rich Low_complexity Low_complexity 3 58 0 189 0 0 0 chrX 22582714 22582735 -154391405 + (A)n Simple_repeat Simple_repeat 1 21 0 319 151 27 3 chrX 22583680 22583757 -154390383 + AluS SINE Alu 1 57 -251 23 0 0 0 chrX 22583775 22583798 -154390342 + AT_rich Low_complexity Low_complexity 1 23 0 320 254 119 68 chrX 22584817 22584935 -154389205 - L2 LINE L2 0 3313 3190 299 161 0 16 chrX 22585243 22585305 -154388835 + GA-rich Low_complexity Low_complexity 1 61 0 523 209 64 0 chrX 22585396 22585506 -154388634 - L2 LINE L2 0 3313 3197 196 304 13 25 chrX 22585915 22585994 -154388146 + L2 LINE L2 2283 2360 -954 22 35 0 0 chrX 22586870 22586899 -154387241 + AT_rich Low_complexity Low_complexity 1 29 0 636 254 123 42 chrX 22586913 22587149 -154386991 + MIR SINE MIR 8 262 0 2323 123 0 0 chrX 22587192 22587501 -154386639 - AluSx SINE Alu -3 309 1 574 181 141 20 chrX 22587550 22587699 -154386441 - MIR SINE MIR -10 252 86 268 189 0 0 chrX 22587702 22587755 -154386385 - MLT2B1 LTR ERVL -3 517 465 294 164 0 0 chrX 22587755 22587810 -154386330 + (TG)n Simple_repeat Simple_repeat 1 55 0 1283 191 52 53 chrX 22587820 22588219 -154385921 - MLT2B1 LTR ERVL -71 449 1 253 0 54 0 chrX 22588275 22588312 -154385828 + (TC)n Simple_repeat Simple_repeat 2 40 0 369 0 0 0 chrX 22588312 22588353 -154385787 + (CA)n Simple_repeat Simple_repeat 1 41 0 278 301 25 49 chrX 22588398 22588561 -154385579 - L2 LINE L2 -6 3307 3149 1859 125 77 0 chrX 22589514 22589786 -154384354 - AluSx SINE Alu -19 293 1 22 35 0 0 chrX 22589813 22589842 -154384298 + AT_rich Low_complexity Low_complexity 1 29 0 382 141 0 42 chrX 22590683 22590754 -154383386 - U6 snRNA snRNA -35 72 5 5131 136 40 2 chrX 22590905 22591841 -154382299 + L1MA4A LINE L1 5332 6302 -1 2169 106 0 13 chrX 22591913 22592216 -154381924 - AluSx SINE Alu 0 312 14 24 32 0 0 chrX 22592272 22592303 -154381837 + AT_rich Low_complexity Low_complexity 1 31 0 715 211 163 48 chrX 22592556 22592783 -154381357 - MIR SINE MIR -5 257 5 506 197 182 5 chrX 22594537 22594675 -154379465 + MER5A DNA MER1_type 17 184 -5 356 192 0 0 chrX 22594683 22594756 -154379384 - Charlie5 DNA MER1_type -27 2585 2513 262 108 0 0 chrX 22594788 22594825 -154379315 - Charlie1 DNA MER1_type -872 1889 1853 423 272 0 0 chrX 22594986 22595166 -154378974 + G-rich Low_complexity Low_complexity 1 180 0 186 293 49 61 chrX 22597037 22597119 -154377021 - L2 LINE L2 -239 3033 2953 22 0 0 0 chrX 22600883 22600905 -154373235 + AT_rich Low_complexity Low_complexity 1 22 0 1602 99 0 19 chrX 22601239 22601452 -154372688 + AluSx SINE Alu 1 209 -103 337 133 0 17 chrX 22601452 22601502 -154372638 + Alu SINE Alu 250 300 0 186 167 0 0 chrX 22601504 22601540 -154372600 + (TA)n Simple_repeat Simple_repeat 2 37 0 397 256 0 0 chrX 22601540 22601630 -154372510 - L1MC4 LINE L1 -1339 6703 6614 249 33 0 0 chrX 22601660 22601690 -154372450 + (GA)n Simple_repeat Simple_repeat 2 31 0 271 258 32 0 chrX 22601703 22601765 -154372375 - MIR3 SINE MIR -20 188 125 285 109 65 0 chrX 22604178 22604224 -154369916 - MER112 DNA MER1_type -211 49 1 2106 124 10 0 chrX 22604305 22604612 -154369528 + AluSx SINE Alu 1 310 -2 2253 151 20 0 chrX 22605101 22605459 -154368681 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 22605501 22605523 -154368617 + AT_rich Low_complexity Low_complexity 1 22 0 2278 100 7 3 chrX 22605560 22605860 -154368280 + AluSq SINE Alu 1 301 -12 1889 53 4 0 chrX 22606042 22606268 -154367872 + AluSc SINE Alu 83 309 0 689 222 52 0 chrX 22607646 22607799 -154366341 + MER5B DNA MER1_type 18 178 0 836 284 13 4 chrX 22609641 22609873 -154364267 - MIR SINE MIR -2 260 27 329 320 14 14 chrX 22610603 22610825 -154363315 - L1ME LINE L1 -353 5768 5547 286 298 218 0 chrX 22612664 22612788 -154361352 + MIR3 SINE MIR 32 182 -26 276 340 39 39 chrX 22613017 22613223 -154360917 + L2 LINE L2 925 1130 -2184 2327 80 7 3 chrX 22613341 22613640 -154360500 - AluSc SINE Alu -9 300 1 584 291 76 47 chrX 22613706 22614103 -154360037 + L2 LINE L2 2625 3024 -248 3656 58 0 0 chrX 22614481 22614943 -154359197 - L1PA7 LINE L1 -1 6153 5692 2297 72 23 7 chrX 22616931 22617236 -154356904 - AluY SINE Alu -1 310 1 208 53 53 0 chrX 22617651 22617689 -154356451 + (TTGTG)n Simple_repeat Simple_repeat 5 44 0 186 226 0 57 chrX 22618694 22618747 -154355393 + L2 LINE L2 3223 3272 0 312 276 35 0 chrX 22619056 22619143 -154354997 + L1MC4 LINE L1 6614 6703 -1339 1654 204 119 91 chrX 22619267 22619992 -154354148 - LTR1B LTR ERV1 -81 745 1 198 191 0 0 chrX 22619992 22620034 -154354106 + (TAG)n Simple_repeat Simple_repeat 3 44 0 1364 81 14 18 chrX 22620102 22620325 -154353815 - LTR7 LTR ERV1 -2 448 227 1880 45 34 0 chrX 22670346 22670640 -154303500 + L1PA2 LINE L1 5879 6181 0 22 0 0 0 chrX 22672132 22672154 -154301986 + AT_rich Low_complexity Low_complexity 1 22 0 2292 101 0 7 chrX 22672711 22673008 -154301132 + AluSg SINE Alu 1 295 -15 201 196 59 20 chrX 22673601 22673703 -154300437 + (TA)n Simple_repeat Simple_repeat 2 107 0 641 331 54 48 chrX 22673789 22673942 -154300198 - L2 LINE L2 -1 3312 3161 2136 96 3 14 chrX 22673942 22674235 -154299905 + AluSq SINE Alu 1 290 -23 641 331 54 48 chrX 22674235 22674613 -154299527 - L2 LINE L2 -152 3161 2776 475 255 100 106 chrX 22674620 22675169 -154298971 + HAL1 LINE L1 1 546 -1961 588 291 101 4 chrX 22676265 22676512 -154297628 + MER102b DNA MER1_type 55 325 -16 189 316 0 18 chrX 22676898 22676955 -154297185 - L2 LINE L2 -17 3255 3200 1972 139 105 18 chrX 22677080 22677526 -154296614 - MER31A LTR ERV1 0 485 1 202 243 162 14 chrX 22677870 22677944 -154296196 + L2 LINE L2 3224 3308 -5 314 294 45 45 chrX 22678478 22678699 -154295441 + MLT1J LTR MaLR 287 507 -4 2235 128 0 0 chrX 22680060 22680366 -154293774 - AluSx SINE Alu -6 306 1 197 276 166 21 chrX 22680896 22681041 -154293099 - MIR SINE MIR -72 190 25 348 359 7 35 chrX 22681717 22681862 -154292278 - MIR3 SINE MIR -33 175 35 342 0 0 0 chrX 22682566 22682604 -154291536 + (TC)n Simple_repeat Simple_repeat 2 39 0 237 274 83 36 chrX 22683095 22683179 -154290961 - MIR SINE MIR -6 256 169 2075 125 0 28 chrX 22683212 22683533 -154290607 + AluSx SINE Alu 1 312 0 908 195 16 0 chrX 22683630 22683815 -154290325 + L1PB4 LINE L1 5967 6154 -2 26 0 0 0 chrX 22684164 22684190 -154289950 + AT_rich Low_complexity Low_complexity 1 26 0 6414 77 4 0 chrX 22684279 22685564 -154288576 - L1PA8A LINE L1 -27 6104 4815 1918 105 3 7 chrX 22685563 22685859 -154288281 + L1PA8A LINE L1 4522 4816 -1330 * 1613 187 0 43 chrX 22686489 22686815 -154287325 + AluJb SINE Alu 1 312 0 258 219 0 0 chrX 22687073 22687137 -154287003 + (TA)n Simple_repeat Simple_repeat 2 65 0 261 0 0 0 chrX 22687138 22687167 -154286973 + (GA)n Simple_repeat Simple_repeat 1 29 0 26 30 0 0 chrX 22687968 22688001 -154286139 + AT_rich Low_complexity Low_complexity 1 33 0 2185 108 3 3 chrX 22688317 22688612 -154285528 + AluSx SINE Alu 3 297 -15 689 209 0 0 chrX 22688632 22688771 -154285369 + FLAM_C SINE Alu 1 139 0 1710 143 0 21 chrX 22689202 22689482 -154284658 + MER1B DNA MER1_type 66 339 0 28 0 0 0 chrX 22690397 22690425 -154283715 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrX 22691134 22691170 -154282970 + AT_rich Low_complexity Low_complexity 1 36 0 244 256 22 22 chrX 22691906 22691996 -154282144 - L2 LINE L2 -790 2524 2435 1227 160 4 16 chrX 22692022 22692272 -154281868 + L1MA7 LINE L1 6044 6290 -1 435 302 83 6 chrX 22692461 22692630 -154281510 - L2 LINE L2 -963 2351 2170 40 0 0 0 chrX 22692756 22692796 -154281344 + AT_rich Low_complexity Low_complexity 1 40 0 187 330 52 31 chrX 22693408 22693505 -154280635 - L2 LINE L2 0 3272 3174 650 317 84 42 chrX 22693675 22694173 -154279967 - L2 LINE L2 -611 2703 2185 27 49 0 0 chrX 22694239 22694280 -154279860 + AT_rich Low_complexity Low_complexity 1 41 0 895 209 29 149 chrX 22694729 22695310 -154278830 - L1MCb LINE L1 -4905 1140 819 323 299 102 22 chrX 22695366 22695503 -154278637 - L1MCb LINE L1 -5343 702 555 209 83 33 33 chrX 22695610 22695670 -154278470 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 1887 141 133 11 chrX 22695731 22696099 -154278041 + MSTA LTR MaLR 1 413 -15 350 248 102 25 chrX 22696336 22696493 -154277647 - L1MCb LINE L1 -5817 228 60 310 227 174 38 chrX 22696607 22696739 -154277401 - L1ME4a LINE L1 -4 6117 5968 2444 92 0 0 chrX 22697601 22697904 -154276236 - AluSc SINE Alu -6 303 1 468 51 0 0 chrX 22698950 22699009 -154275131 + (TG)n Simple_repeat Simple_repeat 2 60 0 268 324 186 20 chrX 22700985 22701189 -154272951 - L3b LINE CR1 -73 1510 1273 180 0 0 0 chrX 22701199 22701219 -154272921 + (A)n Simple_repeat Simple_repeat 1 20 0 2074 112 24 3 chrX 22701489 22701785 -154272355 + AluSx SINE Alu 1 302 -10 390 136 0 0 chrX 22701786 22701852 -154272288 + L1MB8 LINE L1 6108 6173 -5 2440 72 3 0 chrX 22701908 22702212 -154271928 + AluY SINE Alu 1 305 -6 456 324 100 12 chrX 22702599 22702769 -154271371 - MIR3 SINE MIR -5 203 19 245 288 8 80 chrX 22702840 22702965 -154271175 - MIR SINE MIR -40 222 107 890 119 0 73 chrX 22703178 22703329 -154270811 - FLAM_C SINE Alu -3 140 1 234 303 23 15 chrX 22703813 22703945 -154270195 - L1ME3 LINE L1 0 6162 6030 543 24 12 24 chrX 22703956 22704039 -154270101 + (CA)n Simple_repeat Simple_repeat 2 83 0 238 236 173 0 chrX 22704057 22704167 -154269973 + L1MC4 LINE L1 7914 8042 0 2432 248 30 33 chrX 22704175 22705315 -154268825 - L1ME3A LINE L1 -115 6055 4914 507 247 174 7 chrX 22705336 22705623 -154268517 - L1ME3A LINE L1 -2383 3763 3429 585 281 62 62 chrX 22705689 22706027 -154268113 - MER102b DNA MER1_type 0 341 4 186 43 0 0 chrX 22706396 22706419 -154267721 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chrX 22706951 22706982 -154267158 + AT_rich Low_complexity Low_complexity 1 31 0 2174 113 0 0 chrX 22706982 22707315 -154266825 + AluSx SINE Alu 1 333 0 1838 125 93 0 chrX 22707920 22708200 -154265940 - AluSx SINE Alu -1 311 6 1758 137 13 51 chrX 22710136 22710449 -154263691 + AluSx SINE Alu 1 301 -11 557 237 199 26 chrX 22710490 22710646 -154263494 - MER5A DNA MER1_type 0 189 7 408 55 0 0 chrX 22712322 22712377 -154261763 + (TG)n Simple_repeat Simple_repeat 2 56 0 547 202 0 17 chrX 22712467 22712586 -154261554 + FLAM_C SINE Alu 1 117 -26 462 36 0 0 chrX 22712589 22712645 -154261495 + (GAA)n Simple_repeat Simple_repeat 2 57 0 2441 132 0 0 chrX 22712927 22713292 -154260848 + MER47A DNA MER2_type 2 366 0 669 375 105 5 chrX 22715638 22716049 -154258091 + L3 LINE CR1 186 637 -940 558 304 84 22 chrX 22716205 22716432 -154257708 + L3 LINE CR1 1334 1574 -3 25 0 0 0 chrX 22716568 22716593 -154257547 + AT_rich Low_complexity Low_complexity 1 25 0 873 267 37 17 chrX 22716594 22716894 -154257246 - L1ME1 LINE L1 -5 6161 5856 260 140 18 18 chrX 22717156 22717213 -154256927 - MLT1H LTR MaLR 0 549 493 610 204 142 6 chrX 22717214 22717376 -154256764 - MER58C DNA MER1_type -2 213 30 283 275 85 59 chrX 22717409 22717645 -154256495 - MLT1H LTR MaLR -59 490 249 502 157 41 54 chrX 22717684 22717831 -154256309 - MLT1H LTR MaLR -391 158 14 541 198 10 109 chrX 22719109 22719178 -154254962 + MER112 DNA MER1_type 82 156 -104 894 130 19 25 chrX 22719178 22719340 -154254800 - L1PA16 LINE L1 0 6166 6006 541 198 10 109 chrX 22719340 22719462 -154254678 + MER112 DNA MER1_type 156 254 -6 2432 224 85 8 chrX 22719844 22719871 -154254269 - L1ME3A LINE L1 -8 6162 6139 1646 105 39 7 chrX 22719871 22720156 -154253984 + L1MA8 LINE L1 5997 6290 -1 2432 224 85 8 chrX 22720156 22720789 -154253351 - L1ME3A LINE L1 -31 6139 5451 2208 108 0 7 chrX 22720844 22721150 -154252990 + AluSx SINE Alu 1 304 -8 387 0 0 0 chrX 22722004 22722047 -154252093 + (CA)n Simple_repeat Simple_repeat 2 44 0 253 230 10 100 chrX 22723301 22723401 -154250739 - MIR SINE MIR -111 151 61 534 331 120 36 chrX 22725865 22726080 -154248060 + L2 LINE L2 2235 2431 -883 758 210 72 6 chrX 22726080 22726247 -154247893 + MER5B DNA MER1_type 1 178 0 534 331 120 36 chrX 22726247 22726608 -154247532 + L2 LINE L2 2431 2859 -455 1023 269 97 39 chrX 22726901 22727387 -154246753 - LTR33 LTR ERVL -7 514 1 195 351 64 11 chrX 22727640 22727734 -154246406 + MIR SINE MIR 2 100 -162 183 80 0 0 chrX 22727826 22727851 -154246289 + (TAA)n Simple_repeat Simple_repeat 2 26 0 643 188 8 16 chrX 22729009 22729137 -154245003 + FLAM_A SINE Alu 1 127 -6 599 181 0 17 chrX 22729623 22729739 -154244401 - MER5A DNA MER1_type -75 114 1 24 32 0 0 chrX 22729873 22729904 -154244236 + AT_rich Low_complexity Low_complexity 1 31 0 299 25 25 0 chrX 22730062 22730102 -154244038 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 25 75 0 0 chrX 22730185 22730238 -154243902 + GC_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chrX 22730267 22730288 -154243852 + GC_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chrX 22731015 22731039 -154243101 + (T)n Simple_repeat Simple_repeat 1 24 0 441 221 21 0 chrX 22737328 22737423 -154236717 - MER5A DNA MER1_type -83 106 10 1163 136 5 21 chrX 22737698 22737889 -154236251 + MER5A DNA MER1_type 2 189 0 2534 196 60 29 chrX 22738359 22739013 -154235127 - L1ME2 LINE L1 -14 6150 5477 856 168 0 0 chrX 22739709 22739834 -154234306 - FLAM_C SINE Alu -18 125 1 2400 99 0 0 chrX 22741077 22741381 -154232759 - AluSc SINE Alu -5 304 1 205 216 39 0 chrX 22741556 22741607 -154232533 - MER5C DNA MER1_type -200 124 72 295 350 113 5 chrX 22742133 22742327 -154231813 + MIR SINE MIR 48 262 0 1806 105 12 23 chrX 22742670 22742927 -154231213 + AluSx SINE Alu 35 288 -24 1304 202 139 52 chrX 22743077 22743538 -154230602 - LTR33A LTR ERVL 0 523 23 2632 105 29 2 chrX 22743859 22744269 -154229871 - Tigger1 DNA MER2_type 0 2418 1998 * 10390 132 22 16 chrX 22744261 22744560 -154229580 - Tigger1 DNA MER2_type -570 1848 1552 2369 90 0 3 chrX 22744560 22744861 -154229279 - AluSg SINE Alu -10 300 1 10390 132 22 16 chrX 22744861 22745237 -154228903 - Tigger1 DNA MER2_type -866 1552 1180 2394 87 0 0 chrX 22745237 22745535 -154228605 - AluSg SINE Alu -12 298 1 10390 132 22 16 chrX 22745535 22746695 -154227445 - Tigger1 DNA MER2_type -1238 1180 1 248 196 0 0 chrX 22746741 22746792 -154227348 + L2 LINE L2 3262 3312 -1 367 208 88 16 chrX 22747332 22747457 -154226683 - L1ME4a LINE L1 -27 6094 5961 456 303 134 16 chrX 22748282 22748589 -154225551 - L1ME4a LINE L1 -381 5740 5398 315 0 0 0 chrX 22749442 22749477 -154224663 + (CA)n Simple_repeat Simple_repeat 2 36 0 2076 144 3 6 chrX 22749890 22750203 -154223937 - AluJb SINE Alu 0 312 1 283 264 233 6 chrX 22750775 22750938 -154223202 - MIR SINE MIR -60 202 3 345 288 28 73 chrX 22751097 22751274 -154222866 - MIR SINE MIR -8 254 86 210 273 131 17 chrX 22751326 22751455 -154222685 + MIR3 SINE MIR 102 250 -12 197 343 14 14 chrX 22752742 22752815 -154221325 - MIR SINE MIR -61 147 75 986 175 22 79 chrX 22753804 22754032 -154220108 + MER58A DNA MER1_type 10 224 0 268 386 7 39 chrX 22755171 22755324 -154218816 - L2 LINE L2 -4 3268 3121 221 207 0 17 chrX 22755624 22755682 -154218458 + GA-rich Low_complexity Low_complexity 4 60 0 1889 70 89 0 chrX 22756031 22756288 -154217852 + AluSc SINE Alu 12 291 -18 272 283 174 0 chrX 22756455 22756547 -154217593 - MIR SINE MIR -71 137 30 2002 126 0 27 chrX 22757657 22757951 -154216189 - AluJb SINE Alu -26 286 1 247 247 90 0 chrX 22757954 22758043 -154216097 - L1M4 LINE L1 -1332 4814 4718 1775 169 7 17 chrX 22758044 22758346 -154215794 + AluJo SINE Alu 1 299 -13 2127 121 7 3 chrX 22759056 22759361 -154214779 - AluSq SINE Alu -7 306 1 22 80 0 0 chrX 22759809 22759859 -154214281 + AT_rich Low_complexity Low_complexity 1 50 0 279 0 0 0 chrX 22760026 22760057 -154214083 + (TG)n Simple_repeat Simple_repeat 1 31 0 251 267 0 27 chrX 22760384 22760459 -154213681 - MER102a DNA MER1_type -17 313 241 2148 118 0 7 chrX 22760947 22761252 -154212888 + AluSx SINE Alu 1 303 -9 759 172 0 15 chrX 22762846 22762980 -154211160 + FLAM_A SINE Alu 1 132 -1 704 257 8 25 chrX 22763042 22763283 -154210857 - AluSc SINE Alu -11 298 62 1270 118 5 68 chrX 22764099 22764319 -154209821 + AluJo SINE Alu 86 291 -21 216 296 156 29 chrX 22765464 22765611 -154208529 + MIR SINE MIR 15 177 -56 21 0 0 0 chrX 22765858 22765879 -154208261 + AT_rich Low_complexity Low_complexity 1 21 0 234 291 0 0 chrX 22765903 22765958 -154208182 + L3 LINE CR1 1517 1571 -6 2048 141 36 58 chrX 22767040 22767282 -154206858 + MLT1C LTR MaLR 1 230 -237 2241 98 3 0 chrX 22767282 22767577 -154206563 + AluSx SINE Alu 1 296 -16 2048 141 36 58 chrX 22767577 22767782 -154206358 + MLT1C LTR MaLR 230 438 -29 1424 130 79 29 chrX 22767782 22768097 -154206043 + L1MB7 LINE L1 5838 6168 -16 2320 87 0 7 chrX 22768105 22768404 -154205736 + AluSq SINE Alu 3 299 -14 816 229 69 0 chrX 22768417 22768592 -154205548 + L2 LINE L2 2506 2692 -622 468 168 227 0 chrX 22769023 22769142 -154204998 - MER3 DNA MER1_type -63 146 1 668 191 56 0 chrX 22769199 22769325 -154204815 + FLAM_C SINE Alu 1 133 -10 616 288 113 28 chrX 22770484 22770838 -154203302 - L2 LINE L2 -1220 2094 1711 1876 162 15 6 chrX 22770846 22771185 -154202955 - MER7A DNA MER2_type 0 346 7 219 114 0 0 chrX 22771188 22771223 -154202917 + (TG)n Simple_repeat Simple_repeat 2 36 0 562 160 21 0 chrX 22771228 22771322 -154202818 - MER8 DNA MER2_type -3 236 141 661 339 73 22 chrX 22771778 22772273 -154201867 - L2 LINE L2 -2222 1092 573 335 255 29 59 chrX 22772353 22772455 -154201685 + L2 LINE L2 3174 3272 0 2520 68 0 0 chrX 22775813 22776123 -154198017 + AluY SINE Alu 1 310 -1 2078 179 3 3 chrX 22776240 22776620 -154197520 + MER47B DNA MER2_type 1 380 -38 223 258 328 0 chrX 22778288 22778416 -154195724 + MIR3 SINE MIR 36 205 -3 333 47 0 0 chrX 22778844 22778887 -154195253 + (CA)n Simple_repeat Simple_repeat 2 44 0 194 0 39 0 chrX 22778887 22778913 -154195227 + (TA)n Simple_repeat Simple_repeat 1 27 0 2620 92 63 17 chrX 22783038 22783148 -154190992 - L1PA14 LINE L1 -4 6157 6054 820 70 94 8 chrX 22783148 22783276 -154190864 - MER85 DNA T2_type 0 139 1 2620 92 63 17 chrX 22783276 22783579 -154190561 - L1PA14 LINE L1 -107 6054 5725 22 0 0 0 chrX 22783765 22783787 -154190353 + AT_rich Low_complexity Low_complexity 1 22 0 248 266 44 71 chrX 22785935 22786048 -154188092 - L2 LINE L2 -1 3271 3162 2087 105 3 0 chrX 22786132 22786437 -154187703 + AluSx SINE Alu 1 306 0 2213 95 13 3 chrX 22787744 22788048 -154186092 - AluSc SINE Alu -2 307 1 431 272 6 0 chrX 22788739 22788897 -154185243 + CT-rich Low_complexity Low_complexity 2 160 0 351 204 111 0 chrX 22788897 22789005 -154185135 - L1ME1 LINE L1 -119 6047 5928 1371 261 67 48 chrX 22790127 22790411 -154183729 - L1MC4 LINE L1 -190 7852 7575 2113 107 4 0 chrX 22790411 22790692 -154183448 - AluSx SINE Alu -30 282 1 1371 261 67 48 chrX 22790692 22791165 -154182975 - L1MC4 LINE L1 -467 7575 7080 285 303 83 0 chrX 22791856 22791965 -154182175 + MIR3 SINE MIR 87 204 -4 2359 122 5 22 chrX 22792821 22793191 -154180949 - THE1B LTR MaLR 0 364 1 240 35 0 0 chrX 22793379 22793408 -154180732 + (CA)n Simple_repeat Simple_repeat 2 30 0 458 129 0 21 chrX 22793736 22793829 -154180311 + L1MD3 LINE L1 7809 7899 -96 400 184 28 55 chrX 22793829 22793938 -154180202 - MER20 DNA MER1_type 0 219 114 2566 96 63 19 chrX 22794313 22794424 -154179716 - L1PA14 LINE L1 -4 6157 6052 795 78 94 8 chrX 22794424 22794552 -154179588 - MER85 DNA T2_type 0 139 1 2566 96 63 19 chrX 22794552 22794855 -154179285 - L1PA14 LINE L1 -109 6052 5725 22 0 0 0 chrX 22795041 22795063 -154179077 + AT_rich Low_complexity Low_complexity 1 22 0 248 266 44 71 chrX 22797213 22797326 -154176814 - L2 LINE L2 -1 3271 3162 2087 105 3 0 chrX 22797410 22797715 -154176425 + AluSx SINE Alu 1 306 0 2343 100 0 0 chrX 22799022 22799332 -154174808 - AluSx SINE Alu -2 310 1 314 290 72 36 chrX 22799332 22799470 -154174670 - L1ME1 LINE L1 -387 5734 5592 1810 94 31 8 chrX 22800121 22800401 -154173739 - AluSx SINE Alu 0 307 22 1552 155 46 3 chrX 22800946 22801114 -154173026 - AluJb SINE Alu -16 296 110 498 33 0 0 chrX 22801114 22801174 -154172966 + (TG)n Simple_repeat Simple_repeat 2 61 0 1552 155 46 3 chrX 22801174 22801289 -154172851 - AluJb SINE Alu -202 110 1 191 163 47 0 chrX 22801820 22801863 -154172277 - MIR SINE MIR -56 206 162 253 253 93 0 chrX 22803199 22803274 -154170866 - MIR3 SINE MIR -26 182 101 635 201 0 101 chrX 22803541 22803700 -154170440 + Tigger3(Golem) DNA MER2_type 1 143 -2886 2954 137 29 63 chrX 22803754 22803950 -154170190 - L1MA4 LINE L1 -1 6299 6098 874 227 0 0 chrX 22803950 22804113 -154170027 + FAM SINE Alu 1 163 -12 2954 137 29 63 chrX 22804113 22804564 -154169576 - L1MA4 LINE L1 -202 6098 5674 366 127 0 14 chrX 22804879 22804950 -154169190 - L1MA4 LINE L1 -128 6172 6103 374 164 0 0 chrX 22804950 22805011 -154169129 + FRAM/FAM SINE Alu 1 61 -105 680 270 167 14 chrX 22805058 22805280 -154168860 + MIR SINE MIR 7 262 0 336 154 48 29 chrX 22805588 22805692 -154168448 + GA-rich Low_complexity Low_complexity 5 110 0 21 43 0 0 chrX 22805696 22805719 -154168421 + GC_rich Low_complexity Low_complexity 1 23 0 261 271 0 0 chrX 22806164 22806223 -154167917 - MER20 DNA MER1_type -160 59 1 767 244 32 65 chrX 22806773 22807019 -154167121 - MER8 DNA MER2_type -1 238 1 1018 215 14 22 chrX 22808276 22808499 -154165641 - L3b LINE CR1 -136 1447 1227 639 0 0 0 chrX 22808516 22808587 -154165553 + (TC)n Simple_repeat Simple_repeat 2 72 0 357 236 38 0 chrX 22808616 22808722 -154165418 + MER103 DNA DNA 49 158 -8 780 260 134 4 chrX 22809071 22809302 -154164838 - MIR SINE MIR 0 262 2 2985 101 5 5 chrX 22809639 22810077 -154164063 - L1PA13 LINE L1 -6 6157 5720 309 282 47 89 chrX 22810307 22811144 -154162996 + L1MEd LINE L1 579 1401 -4866 6892 11 0 0 chrX 22811180 22811960 -154162180 - L1PA3 LINE L1 -3 6152 5373 2151 112 3 0 chrX 22812096 22812391 -154161749 + AluSx SINE Alu 1 296 -16 291 256 151 17 chrX 22812430 22812602 -154161538 + L1MEd LINE L1 1621 1815 -4581 21 0 0 0 chrX 22812604 22812625 -154161515 + AT_rich Low_complexity Low_complexity 1 21 0 433 237 145 40 chrX 22812823 22812975 -154161165 + MIR3 SINE MIR 38 205 -3 343 141 13 115 chrX 22816091 22816169 -154157971 + L2 LINE L2 3244 3313 0 401 252 47 39 chrX 22816412 22816539 -154157601 - MIR SINE MIR -72 190 63 627 128 0 0 chrX 22816673 22816767 -154157373 + LTR19B LTR ERV1 487 580 0 280 305 176 8 chrX 22816837 22816968 -154157172 + MER5A DNA MER1_type 37 189 0 344 301 135 6 chrX 22817232 22817395 -154156745 - MIR SINE MIR -71 191 8 219 36 0 0 chrX 22818452 22818480 -154155660 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 23 54 0 0 chrX 22819961 22819998 -154154142 + AT_rich Low_complexity Low_complexity 1 37 0 210 37 0 0 chrX 22823333 22823360 -154150780 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 25 51 0 0 chrX 22826000 22826039 -154148101 + AT_rich Low_complexity Low_complexity 1 39 0 403 321 101 24 chrX 22828922 22829155 -154144985 - MIR SINE MIR -2 260 10 221 77 103 0 chrX 22830101 22830140 -154144000 + L2 LINE L2 3271 3313 0 2160 132 13 3 chrX 22832857 22833175 -154140965 - THE1B LTR MaLR -43 321 1 198 0 0 0 chrX 22833930 22833952 -154140188 + (T)n Simple_repeat Simple_repeat 1 22 0 353 394 101 24 chrX 22834079 22834376 -154139764 - L2 LINE L2 -8 3264 2945 420 242 226 16 chrX 22835182 22835372 -154138768 - MIR SINE MIR -18 244 15 325 260 60 0 chrX 22835628 22835728 -154138412 - MER103 DNA DNA -52 114 9 211 296 25 37 chrX 22837106 22837187 -154136953 + L2 LINE L2 3143 3222 -50 355 198 0 0 chrX 22837633 22837714 -154136426 - L1MB8 LINE L1 0 6178 6098 2172 150 20 43 chrX 22837738 22838178 -154135962 - L1MB8 LINE L1 -66 6112 5683 1927 131 33 36 chrX 22838208 22838513 -154135627 + AluJo SINE Alu 1 304 -8 260 212 30 30 chrX 22839619 22839685 -154134455 - MIR SINE MIR 0 262 197 1709 153 0 50 chrX 22840308 22840608 -154133532 - AluJb SINE Alu -21 291 7 2356 74 10 7 chrX 22841718 22842028 -154132112 + AluY SINE Alu 1 311 0 1876 156 0 20 chrX 22843472 22843773 -154130367 + AluJo SINE Alu 1 295 -17 2030 93 68 4 chrX 22843850 22844128 -154130012 + AluSq SINE Alu 3 298 -15 282 266 38 134 chrX 22844243 22844563 -154129577 + L1ME3A LINE L1 933 1221 -4898 829 260 120 38 chrX 22846085 22846685 -154127455 + L1ME3A LINE L1 2437 3085 -3044 643 318 119 28 chrX 22846682 22847478 -154126662 + L1ME3A LINE L1 4448 5316 -813 * 654 296 63 57 chrX 22847552 22848062 -154126078 + L1ME3A LINE L1 5436 5948 -205 279 157 0 0 chrX 22848733 22848784 -154125356 + T-rich Low_complexity Low_complexity 1 51 0 2250 101 0 0 chrX 22850353 22850651 -154123489 + AluSg SINE Alu 1 298 -12 1800 127 82 28 chrX 22852799 22853154 -154120986 - THE1C LTR MaLR 0 375 2 183 204 20 20 chrX 22853481 22853530 -154120610 - L2 LINE L2 -98 3215 3167 23 33 0 0 chrX 22853655 22853685 -154120455 + AT_rich Low_complexity Low_complexity 1 30 0 1107 243 131 33 chrX 22853928 22854418 -154119722 - L1MC4 LINE L1 -88 7954 7417 23 0 0 0 chrX 22854555 22854578 -154119562 + AT_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chrX 22855077 22855112 -154119028 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2108 107 7 10 chrX 22855114 22855405 -154118735 - AluSx SINE Alu -22 290 1 203 241 93 0 chrX 22855448 22855502 -154118638 + L2 LINE L2 3186 3244 -69 4428 100 10 22 chrX 22856448 22856805 -154117335 - L1PB1 LINE L1 0 6151 5804 306 0 0 0 chrX 22856805 22856839 -154117301 + (TG)n Simple_repeat Simple_repeat 2 35 0 4428 100 10 22 chrX 22856839 22857154 -154116986 - L1PB1 LINE L1 -347 5804 5487 1766 130 81 68 chrX 22857441 22857625 -154116515 + THE1C LTR MaLR 1 181 -194 576 0 0 0 chrX 22857625 22857689 -154116451 + (TC)n Simple_repeat Simple_repeat 1 64 0 1766 130 81 68 chrX 22857689 22857874 -154116266 + THE1C LTR MaLR 181 375 0 267 171 0 12 chrX 22857953 22858009 -154116131 - MLT1H LTR MaLR 0 549 507 955 285 60 87 chrX 22858286 22858767 -154115373 + L2 LINE L2 2846 3313 0 2336 98 0 3 chrX 22858997 22859302 -154114838 + AluY SINE Alu 3 306 -5 185 94 31 0 chrX 22860030 22860062 -154114078 + GA-rich Low_complexity Low_complexity 1 33 0 828 142 0 22 chrX 22861274 22861408 -154112732 - FLAM_C SINE Alu -2 131 1 882 112 7 13 chrX 22861410 22861562 -154112578 - L1MA4A LINE L1 -5 6298 6148 2513 77 0 0 chrX 22861593 22861892 -154112248 + AluSg SINE Alu 1 299 -11 284 273 80 9 chrX 22862518 22862628 -154111512 - MIR SINE MIR -67 141 38 231 307 132 9 chrX 22863585 22863699 -154110441 - L2 LINE L2 -20 3252 3125 369 252 79 0 chrX 22864918 22865057 -154109083 + MER112 DNA MER1_type 70 219 -41 197 343 14 14 chrX 22865537 22865610 -154108530 - MIR SINE MIR -61 147 75 986 175 22 79 chrX 22866599 22866827 -154107313 + MER58A DNA MER1_type 10 224 0 268 386 7 39 chrX 22867966 22868119 -154106021 - L2 LINE L2 -4 3268 3121 221 207 0 17 chrX 22868419 22868477 -154105663 + GA-rich Low_complexity Low_complexity 4 60 0 219 88 0 0 chrX 22869476 22869510 -154104630 + (T)n Simple_repeat Simple_repeat 1 34 0 1018 209 76 4 chrX 22870156 22870381 -154103759 - MIR SINE MIR -5 257 17 278 212 0 24 chrX 22873852 22873937 -154100203 + (TGG)n Simple_repeat Simple_repeat 3 85 0 279 54 0 0 chrX 22874850 22874887 -154099253 + (CA)n Simple_repeat Simple_repeat 2 38 0 222 118 0 0 chrX 22875413 22875447 -154098693 + (ATTG)n Simple_repeat Simple_repeat 3 36 0 23 0 0 0 chrX 22876278 22876301 -154097839 + AT_rich Low_complexity Low_complexity 1 23 0 685 253 20 81 chrX 22877278 22877720 -154096420 - L1MC4a LINE L1 -1797 6011 5597 2635 187 42 40 chrX 22879159 22879866 -154094274 - L1MC4 LINE L1 -2 8040 7332 824 270 45 65 chrX 22881548 22881966 -154092174 + LTR16A LTR ERVL 48 450 0 21 0 0 0 chrX 22882117 22882138 -154092002 + AT_rich Low_complexity Low_complexity 1 21 0 1011 120 27 6 chrX 22882138 22882321 -154091819 - L1MA4A LINE L1 -13 6290 6104 560 158 8 75 chrX 22882347 22882467 -154091673 - FLAM_A SINE Alu -23 119 8 2977 272 34 22 chrX 22882644 22883818 -154090322 + L2 LINE L2 2102 3288 -25 520 343 136 27 chrX 22883958 22884296 -154089844 + L3b LINE CR1 1113 1487 -96 2543 80 0 0 chrX 22884391 22884703 -154089437 - AluSx SINE Alu 0 312 1 213 330 122 78 chrX 22885115 22885345 -154088795 - L2 LINE L2 -4 3268 3029 357 211 0 12 chrX 22886139 22886240 -154087900 - MLT1I LTR MaLR -5 428 324 555 199 55 20 chrX 22886336 22886482 -154087658 - MLT1J2 LTR MaLR -291 159 9 274 330 121 49 chrX 22886864 22887088 -154087052 - L2 LINE L2 -431 2883 2644 386 223 49 18 chrX 22887244 22887381 -154086759 - L1ME4a LINE L1 -14 6097 1197 2762 140 34 2 chrX 22887482 22887925 -154086215 - MSTB2 LTR MaLR 0 457 1 5223 183 94 95 chrX 22887930 22889428 -154084712 - MSTB2-int LTR MaLR -5 1646 149 1724 134 120 23 chrX 22889428 22889770 -154084370 + THE1C LTR MaLR 1 375 0 5223 183 94 95 chrX 22889770 22889919 -154084221 - MSTB2-int LTR MaLR -1502 149 1 2097 150 69 27 chrX 22889919 22890325 -154083815 - MSTC LTR MaLR 0 428 6 262 358 0 0 chrX 22890390 22890457 -154083683 + MIR SINE MIR 2 68 -194 791 223 4 101 chrX 22890461 22890522 -154083618 - MER58A DNA MER1_type -2196 224 159 1900 174 30 67 chrX 22890522 22890952 -154083188 - MLT2D LTR ERVL 0 414 1 791 223 4 101 chrX 22890952 22891060 -154083080 - MER58A DNA MER1_type -2261 159 84 1920 142 0 0 chrX 22891060 22891342 -154082798 - AluJb SINE Alu -12 300 19 791 223 4 101 chrX 22891342 22891418 -154082722 - MER58A DNA MER1_type -2336 84 2 489 261 61 67 chrX 22891426 22891549 -154082591 + MIR SINE MIR 69 192 -70 1650 175 35 0 chrX 22891549 22891835 -154082305 + AluJb SINE Alu 2 297 -15 489 261 61 67 chrX 22891835 22891891 -154082249 + MIR SINE MIR 192 247 -15 708 183 26 7 chrX 22891936 22892089 -154082051 - L1MA10 LINE L1 -3 6331 6176 335 294 56 17 chrX 22892190 22892370 -154081770 - L1ME LINE L1 -376 5745 5559 423 307 55 33 chrX 22893017 22893277 -154080863 - L1ME LINE L1 -750 5396 5204 213 39 0 0 chrX 22893487 22893513 -154080627 + (TC)n Simple_repeat Simple_repeat 1 26 0 727 245 34 27 chrX 22893602 22893880 -154080260 + LTR67 LTR ERVL 154 478 -79 3762 158 80 9 chrX 22893880 22894564 -154079576 - MER44D DNA MER2_type 0 605 1 727 245 34 27 chrX 22894564 22894645 -154079495 + LTR67 LTR ERVL 478 557 0 1675 164 23 17 chrX 22894753 22895052 -154079088 - AluJb SINE Alu -7 305 5 1984 154 3 3 chrX 22895056 22895362 -154078778 - AluJb SINE Alu -6 306 1 974 294 62 21 chrX 22896634 22897052 -154077088 + LTR16A LTR ERVL 16 450 0 212 255 198 19 chrX 22897389 22897495 -154076645 - L2 LINE L2 -10 3303 3179 273 242 97 40 chrX 22897666 22897790 -154076350 + L1ME LINE L1 5634 5764 -357 1927 198 97 136 chrX 22898185 22899143 -154074997 + LTR28 LTR ERV1 2 1020 0 3364 122 19 12 chrX 22899207 22899774 -154074366 - L1PA16 LINE L1 -141 6025 5455 306 258 0 11 chrX 22899804 22899893 -154074247 + L1ME1 LINE L1 5555 5642 -479 609 195 8 8 chrX 22899901 22900024 -154074116 + MER63 DNA MER1_type 2 750 -86 1797 229 25 25 chrX 22900032 22900454 -154073686 + L1ME1 LINE L1 5648 6072 -94 2267 91 14 0 chrX 22900454 22900750 -154073390 - AluSx SINE Alu -12 300 1 1797 229 25 25 chrX 22900750 22900842 -154073298 + L1ME1 LINE L1 6071 6162 -4 476 250 56 7 chrX 22901199 22901343 -154072797 + LTR16C LTR ERVL 332 482 -9 393 293 88 60 chrX 22901507 22901756 -154072384 - L2 LINE L2 -4 3309 3054 2435 192 88 63 chrX 22901834 22902640 -154071500 + LTR1B LTR ERV1 1 826 0 275 187 21 105 chrX 22902750 22902871 -154071269 + MLT1H LTR MaLR 453 546 -3 863 311 25 43 chrX 22902876 22903269 -154070871 - L2 LINE L2 -256 3057 2654 646 257 182 61 chrX 22903422 22903768 -154070372 - MLT1G1 LTR MaLR 0 595 208 2179 186 92 29 chrX 22904750 22905189 -154068951 - L1ME2 LINE L1 0 6164 5677 1877 154 3 3 chrX 22905189 22905487 -154068653 - AluSx SINE Alu -14 298 1 2179 186 92 29 chrX 22905487 22905633 -154068507 - L1ME2 LINE L1 -487 5677 5542 3159 139 45 37 chrX 22906894 22907010 -154067130 - MER6A DNA MER2_type -260 605 491 2557 51 0 0 chrX 22907010 22907306 -154066834 + AluY SINE Alu 1 296 -15 2024 127 31 0 chrX 22907311 22907602 -154066538 + AluSx SINE Alu 1 300 -12 3159 139 45 37 chrX 22907602 22908076 -154066064 - MER6A DNA MER2_type -377 488 4 706 271 86 31 chrX 22908181 22908473 -154065667 + MLT1I LTR MaLR 19 326 -83 441 198 12 0 chrX 22908473 22908559 -154065581 - MER96 DNA MER1_type? -88 87 1 552 305 107 38 chrX 22909757 22910232 -154063908 + L2 LINE L2 2232 2739 -575 495 236 205 92 chrX 22910560 22911047 -154063093 - MLT1G1 LTR MaLR 0 542 1 254 268 41 62 chrX 22911095 22911192 -154062948 + L2 LINE L2 3168 3262 -10 4086 147 28 6 chrX 22911807 22912454 -154061686 - L1PA16 LINE L1 0 6166 5506 45271 40 1 0 chrX 22912850 22918996 -154055144 + L1PA4 LINE L1 1 6152 -3 290 185 43 98 chrX 22918996 22919088 -154055052 + MLT1I LTR MaLR 323 409 0 1913 87 3 66 chrX 22919610 22919899 -154054241 + AluY SINE Alu 32 302 -9 817 294 0 31 chrX 22920215 22920443 -154053697 - LTR33 LTR ERVL -300 221 1 1494 169 98 14 chrX 22921481 22921837 -154052303 - LTR37A LTR ERV1 0 426 41 203 180 80 20 chrX 22922087 22922137 -154052003 + MER5A DNA MER1_type 41 93 -96 4160 189 61 29 chrX 22922162 22923760 -154050380 + L1MB7 LINE L1 4492 6166 -18 2033 107 3 17 chrX 22923760 22924060 -154050080 - AluSg SINE Alu -14 296 1 4160 189 61 29 chrX 22924060 22924080 -154050060 + L1MB7 LINE L1 6166 6184 0 327 301 145 64 chrX 22924127 22924486 -154049654 + L1M2 LINE L1 855 1242 -5607 195 42 0 0 chrX 22925269 22925293 -154048847 + (GGGTG)n Simple_repeat Simple_repeat 5 28 0 188 375 45 0 chrX 22925733 22925821 -154048319 - MIR3 SINE MIR -116 92 1 244 272 40 48 chrX 22927876 22928001 -154046139 - MLT1J LTR MaLR -7 504 381 402 134 49 61 chrX 22928011 22928093 -154046047 + HsTC2 DNA Tc2 2 82 -1816 1644 210 52 19 chrX 22928124 22928547 -154045593 + HsTC2 DNA Tc2 1286 1898 0 264 231 123 0 chrX 22928590 22928655 -154045485 - MLT1J LTR MaLR -200 311 239 232 275 0 0 chrX 22928656 22928725 -154045415 - L1MC4 LINE L1 -1355 6687 6619 * 241 245 0 82 chrX 22928702 22928800 -154045340 + L1MC4 LINE L1 6614 6703 -1339 * 254 272 0 22 chrX 22928726 22928818 -154045322 - L1MC4 LINE L1 -1339 6703 6614 229 209 0 0 chrX 22928813 22928856 -154045284 + L1MC4 LINE L1 6653 6695 -1347 * 235 339 0 0 chrX 22928856 22928915 -154045225 + (TG)n Simple_repeat Simple_repeat 1 59 0 227 264 111 0 chrX 22928916 22928988 -154045152 + L1MC4 LINE L1 6616 6695 -1347 435 294 0 0 chrX 22928992 22929155 -154044985 + (TATATG)n Simple_repeat Simple_repeat 4 166 0 527 256 18 0 chrX 22929198 22929434 -154044706 + (TATG)n Simple_repeat Simple_repeat 1 240 0 437 296 11 0 chrX 22929434 22929610 -154044530 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 3173 187 117 94 chrX 22929834 22930416 -154043724 - L1MC3 LINE L1 0 7785 7085 259 235 59 35 chrX 22930416 22930501 -154043639 - MLT1J LTR MaLR -446 121 35 3173 187 117 94 chrX 22930501 22930880 -154043260 - L1MC3 LINE L1 -700 7085 6716 5239 140 38 11 chrX 22930902 22931779 -154042361 - L1MA6 LINE L1 0 6300 5401 2200 129 44 12 chrX 22931836 22932246 -154041894 - L1MA6 LINE L1 -1439 4707 4285 433 288 0 0 chrX 22932240 22932372 -154041768 - L1 LINE L1 -3279 2867 2736 * 498 277 39 0 chrX 22932385 22932540 -154041600 + Charlie8 DNA MER1_type 98 258 -2159 2526 69 0 7 chrX 22933458 22933764 -154040376 - AluSq SINE Alu -9 304 1 2925 210 52 165 chrX 22936436 22937897 -154036243 + L2 LINE L2 13 1308 -2006 1343 174 46 0 chrX 22937953 22938172 -154035968 + MER46A DNA MER2_type 1 229 -7 287 235 49 12 chrX 22938178 22938259 -154035881 - MLT1H LTR MaLR -45 504 421 1241 251 33 92 chrX 22938569 22939239 -154034901 + L2 LINE L2 1325 1954 -1360 1061 140 6 17 chrX 22939244 22939422 -154034718 - AluJb SINE Alu 0 312 137 490 269 6 44 chrX 22939422 22939582 -154034558 + L2 LINE L2 1991 2144 -1170 2161 125 3 3 chrX 22939589 22939893 -154034247 - AluSx SINE Alu -8 304 1 2725 166 25 48 chrX 22939907 22940036 -154034104 - L1MA8 LINE L1 -5 6286 6156 3635 37 0 0 chrX 22940036 22940445 -154033695 - L1PA4 LINE L1 0 6155 5747 2725 166 25 48 chrX 22940445 22940874 -154033266 - L1MA8 LINE L1 -135 6156 5741 568 215 73 40 chrX 22940875 22941052 -154033088 + L2 LINE L2 2156 2338 -976 434 187 51 42 chrX 22941059 22941250 -154032890 + L1MA9 LINE L1 6008 6291 0 313 267 0 0 chrX 22941280 22941385 -154032755 + HAL1 LINE L1 2270 2374 -133 236 186 17 0 chrX 22941450 22941509 -154032631 + (CATA)n Simple_repeat Simple_repeat 2 61 0 1186 294 140 13 chrX 22941635 22942165 -154031975 + L2 LINE L2 2370 2966 -348 331 253 21 21 chrX 22942168 22942263 -154031877 - MLT1H LTR MaLR -1 548 454 552 302 0 0 chrX 22942315 22942444 -154031696 + MER58A DNA MER1_type 6 134 0 293 241 13 51 chrX 22942480 22942559 -154031581 - MLT1H LTR MaLR -251 298 223 215 81 54 0 chrX 22942559 22942596 -154031544 + GA-rich Low_complexity Low_complexity 2 40 0 266 220 34 0 chrX 22942703 22942762 -154031378 - MLT1H LTR MaLR -488 61 1 785 287 97 10 chrX 22942777 22943077 -154031063 + L2 LINE L2 2988 3313 0 2379 79 0 3 chrX 22943651 22943943 -154030197 - AluSq SINE Alu -17 296 6 235 365 185 18 chrX 22944907 22945302 -154028838 - L2 LINE L2 0 3272 2812 228 341 45 30 chrX 22946167 22946299 -154027841 - L2 LINE L2 -556 2758 2625 253 214 83 24 chrX 22947854 22947938 -154026202 - Tigger4(Zombi) DNA MER2_type -1754 977 889 279 227 237 0 chrX 22947938 22948035 -154026105 + MIR SINE MIR 128 247 -15 585 301 179 40 chrX 22948386 22948834 -154025306 + L3 LINE CR1 1051 1560 -17 204 241 78 24 chrX 22949160 22949313 -154024827 - MIR3 SINE MIR -56 206 7 2524 64 0 0 chrX 22950619 22950917 -154023223 + AluY SINE Alu 5 302 -9 769 249 0 31 chrX 22950939 22951132 -154023008 + MIR SINE MIR 74 260 -2 503 291 42 140 chrX 22951182 22951567 -154022573 - L2 LINE L2 -5 3267 2921 2157 111 24 0 chrX 22951621 22951918 -154022222 - AluSx SINE Alu -8 304 1 812 151 8 0 chrX 22952682 22952801 -154021339 - FLAM_C SINE Alu -23 120 1 5251 125 83 30 chrX 22952939 22953454 -154020686 + MER4D LTR ERV1 1 580 -323 2307 101 0 3 chrX 22953454 22953760 -154020380 - AluSg SINE Alu -5 305 1 5251 125 83 30 chrX 22953760 22954102 -154020038 + MER4D LTR ERV1 580 903 0 5101 190 26 35 chrX 22954260 22955531 -154018609 - L1MD2 LINE L1 -2 6357 5096 569 320 22 14 chrX 22955585 22955807 -154018333 - MIR SINE MIR -12 250 27 438 309 13 20 chrX 22955961 22956110 -154018030 - MER5A DNA MER1_type -4 185 38 2036 127 23 7 chrX 22956331 22956638 -154017502 + AluSx SINE Alu 1 312 0 213 245 0 0 chrX 22956790 22956839 -154017301 + MIR3 SINE MIR 154 202 -6 297 0 0 0 chrX 22957381 22957414 -154016726 + (CA)n Simple_repeat Simple_repeat 2 34 0 369 301 55 14 chrX 22958144 22958290 -154015850 - MIR SINE MIR -20 242 91 444 276 59 20 chrX 22958398 22958550 -154015590 + MER5A DNA MER1_type 1 158 -31 295 262 139 8 chrX 22958727 22958849 -154015291 + MIR SINE MIR 74 211 -51 1004 251 80 89 chrX 22958867 22959417 -154014723 + MLT1H LTR MaLR 1 545 -4 1786 319 104 41 chrX 22960972 22962697 -154011443 - L2 LINE L2 -1090 2224 391 2530 99 33 28 chrX 22963012 22963374 -154010766 + THE1B LTR MaLR 1 364 0 344 192 27 0 chrX 22963393 22963466 -154010674 + MER116 DNA Mariner 6 80 0 180 0 0 0 chrX 22963782 22963802 -154010338 + (A)n Simple_repeat Simple_repeat 1 20 0 237 65 0 0 chrX 22964430 22964461 -154009679 + (GA)n Simple_repeat Simple_repeat 2 32 0 192 77 0 0 chrX 22964488 22964514 -154009626 + (A)n Simple_repeat Simple_repeat 1 26 0 1357 226 58 58 chrX 22965858 22966304 -154007836 + LTR16A1 LTR ERVL 1 446 -11 336 260 90 0 chrX 22966312 22966412 -154007728 + MIR SINE MIR 84 192 -70 662 254 32 119 chrX 22966686 22967096 -154007044 + L2 LINE L2 2216 2589 -725 1404 128 182 8 chrX 22967099 22967357 -154006783 - MSTD LTR MaLR -93 303 1 629 193 80 179 chrX 22967357 22967709 -154006431 - L1MC4 LINE L1 -202 7840 7524 202 233 0 0 chrX 22968004 22968047 -154006093 - L2 LINE L2 -1 3312 3270 * 212 231 91 91 chrX 22968033 22968154 -154005986 + MIR SINE MIR 72 192 -70 317 245 141 78 chrX 22968743 22968869 -154005271 + MIR SINE MIR 32 176 -86 694 212 118 18 chrX 22968869 22969039 -154005101 + MER5A DNA MER1_type 2 188 -1 317 245 141 78 chrX 22969039 22969104 -154005036 + MIR SINE MIR 175 235 -27 201 74 0 0 chrX 22969223 22969250 -154004890 + (CA)n Simple_repeat Simple_repeat 1 27 0 2709 35 3 0 chrX 22970177 22970487 -154003653 + AluY SINE Alu 1 311 0 839 280 98 19 chrX 22971135 22971442 -154002698 + MLT1I LTR MaLR 62 392 -17 1172 315 45 13 chrX 22971451 22971815 -154002325 + L1ME3 LINE L1 4106 4502 -1644 351 0 0 0 chrX 22971815 22971854 -154002286 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 1172 315 45 13 chrX 22971854 22972159 -154001981 + L1ME3 LINE L1 4502 4796 -1350 * 1347 283 87 9 chrX 22972156 22972733 -154001407 + L1ME3 LINE L1 5344 5965 -205 245 308 106 0 chrX 22972808 22972912 -154001228 + L1ME3 LINE L1 5969 6083 -79 295 222 102 28 chrX 22972948 22973124 -154001016 - Charlie7 DNA MER1_type -58 2554 2366 * 1519 215 84 23 chrX 22973122 22973550 -154000590 - Charlie7 DNA MER1_type -1852 760 307 632 280 89 32 chrX 22973550 22974016 -154000124 - MLT1H1 LTR MaLR 0 582 1 435 263 195 5 chrX 22974016 22974200 -153999940 - Charlie7 DNA MER1_type -2307 305 83 216 0 0 0 chrX 22975081 22975105 -153999035 + (A)n Simple_repeat Simple_repeat 1 24 0 685 270 167 14 chrX 22975290 22975512 -153998628 - MIR SINE MIR 0 262 7 419 164 0 0 chrX 22975559 22975620 -153998520 - FRAM/FAM SINE Alu -115 61 1 402 127 0 14 chrX 22975620 22975691 -153998449 + L1MA4 LINE L1 6103 6172 -128 3328 139 30 49 chrX 22976006 22976447 -153997693 + L1MA4 LINE L1 5674 6101 -199 933 220 0 17 chrX 22976447 22976620 -153997520 - FAM SINE Alu -5 170 1 3328 139 30 49 chrX 22976620 22976816 -153997324 + L1MA4 LINE L1 6101 6299 -1 693 201 0 101 chrX 22976870 22977029 -153997111 - Tigger3(Golem) DNA MER2_type -2886 143 1 255 253 93 0 chrX 22977296 22977371 -153996769 + MIR3 SINE MIR 101 182 -26 189 163 47 0 chrX 22978707 22978750 -153995390 + MIR SINE MIR 162 206 -56 226 187 198 11 chrX 22979147 22979238 -153994902 - L1ME4a LINE L1 0 6121 6014 1618 155 42 0 chrX 22979281 22979396 -153994744 + AluJo SINE Alu 1 110 -202 498 33 0 0 chrX 22979396 22979456 -153994684 + (CA)n Simple_repeat Simple_repeat 2 61 0 1618 155 42 0 chrX 22979456 22979624 -153994516 + AluJo SINE Alu 110 296 -16 1858 95 32 4 chrX 22980169 22980448 -153993692 + AluSx SINE Alu 22 307 0 250 289 78 31 chrX 22981109 22981237 -153992903 + L1ME LINE L1 5601 5734 -387 2536 74 0 0 chrX 22981238 22981537 -153992603 + AluSg SINE Alu 1 299 -11 277 273 80 9 chrX 22982163 22982273 -153991867 - MIR SINE MIR -67 141 38 227 265 147 10 chrX 22983230 22983332 -153990808 - L2 LINE L2 -20 3252 3137 430 230 180 0 chrX 22984563 22984724 -153989416 + MER112 DNA MER1_type 70 259 -1 2402 91 0 0 chrX 22985180 22985488 -153988652 - AluY SINE Alu -3 308 1 221 349 113 21 chrX 22985589 22985970 -153988170 + L2 LINE L2 1931 2346 -968 274 256 66 41 chrX 22985971 22986092 -153988048 - MLT2F LTR ERVL 0 663 540 431 127 0 0 chrX 22986192 22986247 -153987893 - AluSg/x SINE Alu -132 180 126 2359 67 3 7 chrX 22986248 22986546 -153987594 - AluY SINE Alu -14 297 1 1400 192 47 29 chrX 22986560 22986904 -153987236 - MER74A LTR ERVL -197 361 12 186 327 144 10 chrX 22987163 22987267 -153986873 + L2 LINE L2 3154 3271 -1 188 265 0 0 chrX 22987534 22987583 -153986557 - MIR3 SINE MIR -6 202 154 1834 150 23 7 chrX 22987736 22988043 -153986097 - AluJb SINE Alu 0 312 1 295 279 78 31 chrX 22988250 22988379 -153985761 - MER5A DNA MER1_type -6 183 49 217 371 8 23 chrX 22988261 22988393 -153985747 + MER5A DNA MER1_type 35 164 -25 * 1415 140 3 74 chrX 22989051 22989336 -153984804 + AluSc SINE Alu 32 296 -13 713 195 8 0 chrX 22989965 22990083 -153984057 - FLAM_C SINE Alu -23 120 2 2441 167 112 10 chrX 22990222 22990724 -153983416 + MER4D LTR ERV1 1 553 -350 22 77 0 0 chrX 22990727 22990753 -153983387 + AT_rich Low_complexity Low_complexity 1 26 0 225 94 0 0 chrX 22993013 22993045 -153981095 + (T)n Simple_repeat Simple_repeat 1 32 0 1759 70 0 0 chrX 22993161 22993376 -153980764 + AluY SINE Alu 93 307 -4 277 294 73 0 chrX 22993787 22993855 -153980285 + MER91A DNA MER1_type 119 191 -5 337 276 262 13 chrX 22994188 22994413 -153979727 - L2 LINE L2 0 3313 3033 294 73 0 0 chrX 22994581 22994622 -153979518 + (TG)n Simple_repeat Simple_repeat 2 42 0 180 200 0 0 chrX 22995539 22995584 -153978556 + (CCA)n Simple_repeat Simple_repeat 2 46 0 687 271 68 90 chrX 22996489 22997001 -153977139 - MLT1H LTR MaLR -7 542 42 231 327 40 0 chrX 22997072 22997173 -153976967 - MIR SINE MIR -75 187 83 360 0 0 0 chrX 22997434 22997474 -153976666 + (TC)n Simple_repeat Simple_repeat 1 40 0 380 146 49 49 chrX 22997499 22997581 -153976559 - L1MC4 LINE L1 -804 7238 7157 341 203 14 0 chrX 22998341 22998410 -153975730 - MLT1J LTR MaLR -45 466 397 192 383 32 40 chrX 22998508 22998759 -153975381 + L2 LINE L2 3010 3258 -14 1537 99 0 9 chrX 22999161 22999382 -153974758 + AluSq SINE Alu 85 303 -10 4262 149 44 19 chrX 22999814 23000514 -153973626 + LTR62 LTR ERVK 1 718 -1 414 245 65 116 chrX 23000536 23000752 -153973388 + MLT1H LTR MaLR 231 435 -114 1687 213 18 34 chrX 23001334 23001714 -153972426 - MLT1A2 LTR MaLR 0 374 1 4329 225 59 68 chrX 23001726 23003089 -153971051 - MLT1A1-int LTR MaLR -14 1357 6 1815 183 86 6 chrX 23003095 23003433 -153970707 - MLT1A1 LTR MaLR 0 365 1 2474 263 76 42 chrX 23003433 23003673 -153970467 - L2 LINE L2 -511 2803 2573 2156 159 42 3 chrX 23003673 23004007 -153970133 - MER7A DNA MER2_type 0 346 2 2474 263 76 42 chrX 23004007 23004130 -153970010 - L2 LINE L2 -741 2573 2456 1976 79 4 0 chrX 23004130 23004382 -153969758 + AluSq SINE Alu 58 310 -3 2474 263 76 42 chrX 23004382 23004874 -153969266 - L2 LINE L2 -858 2456 1918 582 139 55 0 chrX 23004984 23005149 -153968991 + (TA)n Simple_repeat Simple_repeat 2 175 0 396 277 9 0 chrX 23005149 23005261 -153968879 - L1MC4 LINE L1 -124 7918 7806 2207 108 0 25 chrX 23005266 23005581 -153968559 + AluSx SINE Alu 6 312 0 3179 85 17 7 chrX 23007356 23007778 -153966362 + L1PA14 LINE L1 5733 6158 -3 2290 90 7 3 chrX 23009526 23009826 -153964314 + AluSg SINE Alu 1 301 -9 183 162 0 0 chrX 23010232 23010269 -153963871 + (TG)n Simple_repeat Simple_repeat 1 37 0 517 297 31 5 chrX 23010529 23010721 -153963419 + L2 LINE L2 3117 3313 0 331 319 121 13 chrX 23010732 23010889 -153963251 - MIR SINE MIR -71 191 18 * 448 246 45 0 chrX 23010884 23010994 -153963146 + MER5C DNA MER1_type 10 124 -200 352 269 0 11 chrX 23011675 23011768 -153962372 + L2 LINE L2 3222 3313 0 307 323 127 25 chrX 23011779 23011937 -153962203 - MIR SINE MIR -71 191 18 * 419 234 45 9 chrX 23011932 23012043 -153962097 + MER5C DNA MER1_type 10 124 -200 27 62 0 0 chrX 23012261 23012309 -153961831 + AT_rich Low_complexity Low_complexity 1 48 0 2249 107 0 0 chrX 23012981 23013281 -153960859 + AluSg SINE Alu 1 300 -10 1848 168 10 0 chrX 23014574 23014877 -153959263 + AluJo SINE Alu 1 306 -6 384 198 159 8 chrX 23015100 23015226 -153958914 + MER5C DNA MER1_type 127 271 -53 1925 74 3 130 chrX 23015226 23015574 -153958566 - AluSp SINE Alu 0 307 1 211 330 45 0 chrX 23016311 23016399 -153957741 - MIR SINE MIR -74 188 97 831 214 31 45 chrX 23016552 23016776 -153957364 + MER45B DNA AcHobo 85 305 -735 391 172 0 0 chrX 23016779 23016843 -153957297 - MER45B DNA AcHobo -976 64 1 490 292 8 8 chrX 23016916 23017046 -153957094 - MER115 DNA AcHobo -556 137 8 275 428 29 0 chrX 23018868 23019006 -153955134 - L2 LINE L2 -13 3259 3118 1061 212 104 0 chrX 23019088 23019319 -153954821 + MIR SINE MIR 8 262 0 246 174 43 0 chrX 23019514 23019560 -153954580 + MIR SINE MIR 58 105 -157 239 174 101 64 chrX 23019715 23019824 -153954316 - MLT1F LTR MaLR -16 526 414 328 387 67 35 chrX 23020217 23020611 -153953529 - L2 LINE L2 -582 2732 2352 2364 260 40 19 chrX 23020611 23021260 -153952880 + MLT2F LTR ERVL 1 663 0 328 387 67 35 chrX 23021260 23021642 -153952498 - L2 LINE L2 -962 2352 1931 2578 55 0 0 chrX 23021743 23022051 -153952089 + AluY SINE Alu 1 308 -3 277 294 73 0 chrX 23022461 23022529 -153951611 + MER91A DNA MER1_type 119 191 -5 1050 277 128 45 chrX 23022862 23023566 -153950574 - L2 LINE L2 0 3313 2528 295 286 0 0 chrX 23023612 23023682 -153950458 + MER63 DNA MER1_type 716 785 -276 2390 232 75 33 chrX 23023682 23024342 -153949798 + L1MC4a LINE L1 6296 7000 -808 183 80 0 0 chrX 23024342 23024367 -153949773 + (TGGA)n Simple_repeat Simple_repeat 3 27 0 2390 232 75 33 chrX 23024367 23024534 -153949606 + L1MC4a LINE L1 7000 7158 -650 207 0 0 0 chrX 23024556 23024579 -153949561 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 436 197 8 68 chrX 23024583 23024715 -153949425 + L1MC4 LINE L1 7919 8042 0 1236 310 152 7 chrX 23024719 23025397 -153948743 - L2 LINE L2 -1320 1994 1219 185 266 55 73 chrX 23025995 23026104 -153948036 - MIR SINE MIR -84 124 18 4784 104 18 3 chrX 23026352 23027033 -153947107 + LTR8 LTR ERV1 1 691 0 791 264 133 42 chrX 23027158 23027586 -153946554 + MLT1H LTR MaLR 79 545 -4 243 207 60 95 chrX 23027696 23027812 -153946328 + MIR SINE MIR 85 196 -66 3759 110 77 5 chrX 23028286 23028887 -153945253 + LTR9B LTR ERV1 1 644 0 752 158 103 18 chrX 23029581 23029746 -153944394 - MER74A LTR ERVL 0 558 380 1361 111 0 11 chrX 23029773 23029962 -153944178 - AluSg/x SINE Alu 0 312 126 2340 67 3 7 chrX 23029963 23030261 -153943879 - AluY SINE Alu -14 297 1 1484 184 39 33 chrX 23030275 23030634 -153943506 - MER74A LTR ERVL -197 361 1 296 292 177 9 chrX 23030870 23030983 -153943157 + L2 LINE L2 3140 3271 -1 2882 168 74 33 chrX 23031161 23031794 -153942346 - L1MB7 LINE L1 -9 6175 5517 189 0 0 0 chrX 23031862 23031883 -153942257 + (TG)n Simple_repeat Simple_repeat 1 21 0 297 219 82 0 chrX 23032109 23032182 -153941958 - LTR16C LTR ERVL -2 489 411 248 109 236 18 chrX 23032183 23032238 -153941902 + MER51A LTR ERV1 23 89 -545 * 2481 48 6 21 chrX 23032227 23032460 -153941680 + MER51B LTR ERV1 48 276 -101 1285 55 12 0 chrX 23032460 23032624 -153941516 + L1PA7 LINE L1 5986 6151 -3 2481 48 6 21 chrX 23032624 23032725 -153941415 + MER51B LTR ERV1 276 377 0 1080 200 65 56 chrX 23033125 23033465 -153940675 - L1ME2 LINE L1 -11 6153 5811 1743 173 3 10 chrX 23033469 23033781 -153940359 - MER61B LTR ERV1 -14 411 102 542 172 19 1 chrX 23033793 23033907 -153940233 - MER61B LTR ERV1 -318 107 7 721 183 24 0 chrX 23033911 23034075 -153940065 - L1ME2 LINE L1 -345 5819 5652 2051 134 3 16 chrX 23034242 23034548 -153939592 - AluJo SINE Alu -10 302 1 1655 251 95 4 chrX 23036009 23036504 -153937636 + L1ME3A LINE L1 5622 6161 -9 203 263 35 18 chrX 23037532 23037589 -153936551 - MER5A DNA MER1_type -3 186 129 848 225 162 45 chrX 23037589 23037638 -153936502 + MLT1A2 LTR MaLR 1 43 -331 1641 73 13 60 chrX 23037638 23037687 -153936453 + AluSg/x SINE Alu 89 139 -173 2368 40 0 40 chrX 23037687 23037991 -153936149 + AluY SINE Alu 1 292 -19 1641 73 13 60 chrX 23037991 23038173 -153935967 + AluSg/x SINE Alu 139 309 -3 848 225 162 45 chrX 23038173 23038456 -153935684 + MLT1A2 LTR MaLR 43 372 -2 2458 197 38 87 chrX 23038456 23039005 -153935135 + MSTD-int LTR MaLR 3 511 -1224 2308 101 7 0 chrX 23039005 23039312 -153934828 - AluSc SINE Alu 0 309 1 2458 197 38 87 chrX 23039312 23039474 -153934666 + MSTD-int LTR MaLR 511 679 -1056 3062 205 104 42 chrX 23039495 23040265 -153933875 + MSTD-int LTR MaLR 918 1735 0 999 185 114 26 chrX 23040265 23040603 -153933537 + MSTD LTR MaLR 1 396 0 477 257 9 0 chrX 23040604 23040709 -153933431 - MER5A DNA MER1_type -80 109 4 809 222 52 12 chrX 23041559 23041807 -153932333 - L1ME3A LINE L1 -9 6161 5904 1510 145 54 8 chrX 23043062 23043304 -153930836 + AluJo SINE Alu 1 253 -59 276 279 0 15 chrX 23043399 23043467 -153930673 + MER5B DNA MER1_type 1 67 -111 2093 130 10 0 chrX 23043514 23043822 -153930318 + AluSp SINE Alu 3 313 0 990 175 0 9 chrX 23043826 23044043 -153930097 + L1MA7 LINE L1 6028 6242 -49 298 143 0 43 chrX 23044080 23044150 -153929990 + (GGGAA)n Simple_repeat Simple_repeat 5 71 0 703 279 74 13 chrX 23044161 23044390 -153929750 - L2 LINE L2 -344 2970 2728 1980 127 8 0 chrX 23044447 23044715 -153929425 - AluSx SINE Alu -16 296 27 364 200 27 27 chrX 23045003 23045113 -153929027 - MLT1H LTR MaLR -435 114 5 1621 176 21 21 chrX 23046396 23046736 -153927404 - MER58B DNA MER1_type -1 340 1 4751 77 67 17 chrX 23048360 23048510 -153925630 + L1PA14 LINE L1 5423 5564 -597 2457 60 7 7 chrX 23048510 23048812 -153925328 + AluY SINE Alu 1 302 -9 4751 77 67 17 chrX 23048812 23049362 -153924778 + L1PA14 LINE L1 5564 6158 -3 792 65 12 71 chrX 23150287 23150557 -153823583 + (CAAGG)n Simple_repeat Simple_repeat 1 254 0 739 97 2 74 chrX 23150590 23151295 -153822845 + (CAAGG)n Simple_repeat Simple_repeat 1 653 0 624 96 16 69 chrX 23151328 23151516 -153822624 + (CAAGG)n Simple_repeat Simple_repeat 2 179 0 730 102 54 41 chrX 23151545 23152027 -153822113 + (CAAGG)n Simple_repeat Simple_repeat 1 488 0 783 99 23 60 chrX 23152071 23152360 -153821780 + (CAAGG)n Simple_repeat Simple_repeat 1 278 0 2536 59 0 0 chrX 23152475 23152779 -153821361 + AluY SINE Alu 1 304 -7 440 102 0 0 chrX 23152793 23152852 -153821288 + Charlie5 DNA MER1_type 2564 2622 0 31 0 0 0 chrX 23153447 23153478 -153820662 + AT_rich Low_complexity Low_complexity 1 31 0 2059 125 0 35 chrX 23153536 23153855 -153820285 - AluJo SINE Alu -2 310 3 225 245 0 0 chrX 23154682 23154731 -153819409 + CT-rich Low_complexity Low_complexity 2 50 0 1905 120 0 4 chrX 23155486 23155752 -153818388 + AluJb SINE Alu 1 265 -47 321 126 58 19 chrX 23155852 23155955 -153818185 + (CAAGG)n Simple_repeat Simple_repeat 1 107 0 517 242 0 0 chrX 23155956 23156047 -153818093 - MER7A DNA MER2_type -254 92 4 1203 176 69 8 chrX 23156064 23156309 -153817831 + L1MD3 LINE L1 7726 7985 -10 1020 169 113 25 chrX 23156467 23156594 -153817546 + L1MD1 LINE L1 5979 6093 -266 4850 138 66 23 chrX 23156594 23157386 -153816754 + LTR1B LTR ERV1 1 826 0 1020 169 113 25 chrX 23157386 23157500 -153816640 + L1MD1 LINE L1 6093 6358 -1 1582 206 112 60 chrX 23158081 23158555 -153815585 + L1MC4 LINE L1 7281 7729 -313 1610 157 75 7 chrX 23158555 23158835 -153815305 + AluJb SINE Alu 1 299 -13 1582 206 112 60 chrX 23158835 23158971 -153815169 + L1MC4 LINE L1 7729 7927 -115 234 0 0 0 chrX 23158971 23158997 -153815143 + (TG)n Simple_repeat Simple_repeat 2 27 0 1582 206 112 60 chrX 23158997 23159017 -153815123 + L1MC4 LINE L1 7927 7945 -97 25 0 0 0 chrX 23159139 23159164 -153814976 + AT_rich Low_complexity Low_complexity 1 25 0 1939 158 10 0 chrX 23159732 23160035 -153814105 + AluJb SINE Alu 1 306 -6 940 136 0 0 chrX 23160159 23160299 -153813841 - AluY SINE Alu -171 140 1 706 113 64 0 chrX 23160300 23160441 -153813699 - Charlie5 DNA MER1_type -123 2489 2340 2571 55 3 0 chrX 23160580 23160888 -153813252 + AluY SINE Alu 1 309 -2 2324 215 72 19 chrX 23164987 23165628 -153808512 - L1M4 LINE L1 -755 5391 4717 821 154 59 0 chrX 23165630 23165766 -153808374 - AluJ SINE Alu -14 298 155 866 171 27 7 chrX 23165830 23165976 -153808164 - AluJ SINE Alu -163 149 1 3462 222 45 45 chrX 23165996 23167071 -153807069 - L1M4 LINE L1 -1447 4699 3625 956 138 132 0 chrX 23167071 23167230 -153806910 + L1MC1 LINE L1 6106 6285 -48 1341 253 146 16 chrX 23167272 23167422 -153806718 - L1M4 LINE L1 -2519 3627 3498 376 19 38 0 chrX 23167422 23167475 -153806665 + (TA)n Simple_repeat Simple_repeat 2 56 0 1341 253 146 16 chrX 23167475 23167898 -153806242 - L1M4 LINE L1 -2648 3498 2979 1289 91 178 5 chrX 23168022 23168287 -153805853 + THE1B LTR MaLR 1 355 0 2086 99 53 0 chrX 23168670 23168953 -153805187 + AluSx SINE Alu 1 298 -14 1605 109 0 0 chrX 23169221 23169431 -153804709 + AluSg/x SINE Alu 80 289 -23 392 328 107 83 chrX 23169769 23170002 -153804138 + L1MEd LINE L1 461 687 -5432 3540 148 22 39 chrX 23170002 23170624 -153803516 + LTR9 LTR ERV1 1 612 0 392 328 107 83 chrX 23170624 23170851 -153803289 + L1MEd LINE L1 687 907 -5212 3581 109 49 73 chrX 23170851 23171466 -153802674 - MER4A LTR ERV1 0 600 1 392 328 107 83 chrX 23171466 23171522 -153802618 + L1MEd LINE L1 907 960 -5159 2072 121 0 23 chrX 23171522 23171829 -153802311 - AluSx SINE Alu -12 300 1 392 328 107 83 chrX 23171829 23171901 -153802239 + L1MEd LINE L1 960 1065 -5054 237 325 44 0 chrX 23171901 23172015 -153802125 - LTR16A LTR ERVL -157 293 175 254 254 15 15 chrX 23172384 23172451 -153801689 + GA-rich Low_complexity Low_complexity 2 68 0 1803 167 42 0 chrX 23172468 23172756 -153801384 + AluJo SINE Alu 1 300 -12 244 314 113 35 chrX 23172907 23173136 -153801004 + MLT1H LTR MaLR 98 344 -205 * 255 250 42 42 chrX 23173134 23173230 -153800910 + MLT1H LTR MaLR 454 549 0 579 216 44 24 chrX 23173857 23173893 -153800247 + MLT1H LTR MaLR 232 266 -283 2521 122 22 17 chrX 23173893 23174255 -153799885 - THE1B LTR MaLR 0 364 1 579 216 44 24 chrX 23174255 23174416 -153799724 + MLT1H LTR MaLR 266 549 0 663 293 116 52 chrX 23174596 23175442 -153798698 + L2 LINE L2 2455 3309 -4 320 174 35 35 chrX 23176192 23176278 -153797862 + MLT1H LTR MaLR 459 544 -5 189 242 113 0 chrX 23176290 23176352 -153797788 + L2 LINE L2 2678 2746 -568 216 97 0 0 chrX 23176440 23176471 -153797669 + (TG)n Simple_repeat Simple_repeat 1 31 0 2452 81 0 0 chrX 23177426 23177736 -153796404 - AluSg SINE Alu 0 310 1 582 276 91 66 chrX 23177836 23178288 -153795852 + MLT1H LTR MaLR 81 543 -6 207 0 0 0 chrX 23178525 23178548 -153795592 + (T)n Simple_repeat Simple_repeat 1 23 0 189 107 0 0 chrX 23178617 23178645 -153795495 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 24 53 0 0 chrX 23179258 23179296 -153794844 + AT_rich Low_complexity Low_complexity 1 38 0 201 156 0 0 chrX 23179457 23179489 -153794651 + (TAG)n Simple_repeat Simple_repeat 3 34 0 2281 101 3 0 chrX 23181280 23181586 -153792554 + AluSx SINE Alu 1 307 -5 32 26 0 0 chrX 23182832 23182871 -153791269 + AT_rich Low_complexity Low_complexity 1 39 0 214 346 0 0 chrX 23183239 23183291 -153790849 - L2 LINE L2 -119 3153 3102 188 306 68 54 chrX 23183345 23183492 -153790648 + L2 LINE L2 2911 3059 -213 2394 80 0 10 chrX 23184513 23184824 -153789316 - AluSg SINE Alu -2 308 1 309 232 141 0 chrX 23184885 23184984 -153789156 - L1MC5 LINE L1 -23 7938 7826 705 266 73 40 chrX 23185087 23185335 -153788805 + MIR SINE MIR 1 256 -6 219 308 154 0 chrX 23185577 23185707 -153788433 + MIR SINE MIR 101 250 -12 2128 120 7 0 chrX 23186721 23187013 -153787127 - AluSx SINE Alu -18 294 1 432 252 0 0 chrX 23187831 23187938 -153786202 + MIR SINE MIR 100 206 -56 262 163 0 23 chrX 23188189 23188232 -153785908 + HUERS-P3 LTR ERV1 7557 7598 -1321 1060 163 21 32 chrX 23189381 23189571 -153784569 + MER58A DNA MER1_type 37 224 0 1844 163 0 10 chrX 23189869 23190163 -153783977 + AluJb SINE Alu 1 291 -21 1319 154 9 39 chrX 23192145 23192378 -153781762 - AluJb SINE Alu -8 304 79 1738 91 0 0 chrX 23192933 23193152 -153780988 + AluSx SINE Alu 50 268 -44 1313 58 6 17 chrX 23193397 23193570 -153780570 - AluSq SINE Alu -142 171 1 5534 155 59 79 chrX 23193570 23193947 -153780193 - L1MA9 LINE L1 -346 5966 5583 1459 160 21 83 chrX 23193947 23194146 -153779994 - AluJb SINE Alu -7 305 132 2016 98 25 60 chrX 23194146 23194462 -153779678 + AluSq SINE Alu 2 306 -7 1459 160 21 83 chrX 23194462 23194587 -153779553 - AluJb SINE Alu -180 132 1 5534 155 59 79 chrX 23194587 23195712 -153778428 - L1MA9 LINE L1 -729 5583 4438 1378 174 66 35 chrX 23195712 23195999 -153778141 - AluJo SINE Alu -16 296 1 5534 155 59 79 chrX 23195999 23196180 -153777960 - L1MA9 LINE L1 -1874 4438 4255 2440 91 3 0 chrX 23196180 23196488 -153777652 - AluSg SINE Alu -1 309 1 5534 155 59 79 chrX 23196488 23196826 -153777314 - L1MA9 LINE L1 -2057 4255 3975 1282 186 41 41 chrX 23196825 23197143 -153776997 - L1MA7 LINE L1 0 6291 5974 * 226 146 42 0 chrX 23197399 23197447 -153776693 - L1MA6 LINE L1 -117 6183 6134 7764 35 39 3 chrX 23197454 23198871 -153775269 - SVA Other Other -839 1382 31 392 176 71 0 chrX 23199452 23199537 -153774603 + L1M4 LINE L1 2452 2542 -3604 10268 175 151 19 chrX 23199579 23201267 -153772873 + L1PA13 LINE L1 2 1465 -5332 1922 137 31 3 chrX 23201267 23201560 -153772580 - AluSx SINE Alu -11 301 1 10268 175 151 19 chrX 23201560 23202037 -153772103 + L1PA13 LINE L1 1465 1878 -4919 1806 155 4 4 chrX 23202037 23202315 -153771825 - AluJo SINE Alu -21 291 14 10268 175 151 19 chrX 23202315 23202356 -153771784 + L1PA13 LINE L1 1878 2516 -4281 690 163 0 0 chrX 23202357 23202455 -153771685 + AluJ/FLAM SINE Alu 2 99 -213 1372 128 0 10 chrX 23202555 23202759 -153771381 + AluSg/x SINE Alu 84 285 -25 11510 166 39 35 chrX 23202773 23203614 -153770526 + L1PA13 LINE L1 3951 4787 -2027 2392 86 3 3 chrX 23203614 23203915 -153770225 + AluSg SINE Alu 1 301 -9 11510 166 39 35 chrX 23203915 23205192 -153768948 + L1PA13 LINE L1 4787 6057 -757 2301 85 0 0 chrX 23205192 23205473 -153768667 + AluSg SINE Alu 1 281 -29 11510 166 39 35 chrX 23205473 23205553 -153768587 + L1PA13 LINE L1 6057 6135 -679 2044 146 154 19 chrX 23205553 23205930 -153768210 - MSTA LTR MaLR 0 428 1 11510 166 39 35 chrX 23205930 23206515 -153767625 + L1PA13 LINE L1 6135 6800 -14 23 0 0 0 chrX 23206854 23206877 -153767263 + AT_rich Low_complexity Low_complexity 1 23 0 339 261 155 21 chrX 23207521 23207663 -153766477 + L1ME4a LINE L1 5961 6121 0 2148 126 7 3 chrX 23207812 23208121 -153766019 + AluJb SINE Alu 1 310 -2 1091 227 58 110 chrX 23208124 23208211 -153765929 + MLT1H LTR MaLR 95 185 -364 1851 154 3 20 chrX 23208211 23208503 -153765637 + AluJb SINE Alu 9 295 -17 1091 227 58 110 chrX 23208503 23208895 -153765245 + MLT1H LTR MaLR 185 549 0 2516 63 0 3 chrX 23208929 23209231 -153764909 + AluY SINE Alu 1 301 -10 30 27 0 0 chrX 23209904 23209941 -153764199 + AT_rich Low_complexity Low_complexity 1 37 0 1738 136 34 20 chrX 23210010 23210305 -153763835 + AluJb SINE Alu 1 299 -13 962 156 6 62 chrX 23210435 23210614 -153763526 - AluJo SINE Alu -142 170 2 1710 167 0 23 chrX 23211519 23211824 -153762316 + AluJb SINE Alu 1 298 -14 23 0 0 0 chrX 23212044 23212067 -153762073 + AT_rich Low_complexity Low_complexity 1 23 0 2052 117 14 0 chrX 23212651 23212941 -153761199 + AluSg SINE Alu 1 294 -16 2329 102 0 7 chrX 23213689 23213710 -153760430 - AluSx SINE Alu 0 312 292 181 0 0 0 chrX 23213710 23213730 -153760410 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2329 102 0 7 chrX 23213730 23214013 -153760127 - AluSx SINE Alu -20 292 1 258 282 55 0 chrX 23214214 23214324 -153759816 - L1MC4 LINE L1 0 8042 7927 2106 113 6 39 chrX 23214703 23215014 -153759126 + AluSg SINE Alu 1 301 -9 405 102 0 0 chrX 23215014 23215041 -153759099 + (CA)n Simple_repeat Simple_repeat 1 86 0 405 102 0 0 chrX 23215041 23215100 -153759040 + (CA)n Simple_repeat Simple_repeat 2 60 0 535 234 117 0 chrX 23215233 23215404 -153758736 - L1MC4a LINE L1 -1876 5932 5742 1036 98 0 0 chrX 23216572 23216705 -153757435 - AluSp SINE Alu -180 133 1 1859 56 5 0 chrX 23220865 23221080 -153753060 + AluSp SINE Alu 1 216 -97 2307 92 0 10 chrX 23221296 23221602 -153752538 + AluSg SINE Alu 1 303 -7 2308 101 0 7 chrX 23222066 23222364 -153751776 + AluSx SINE Alu 1 296 -16 673 174 0 0 chrX 23223371 23223480 -153750660 + AluJb SINE Alu 2 110 -202 900 147 0 0 chrX 23223481 23223637 -153750503 + AluSg/x SINE Alu 154 309 0 874 74 33 48 chrX 23223799 23224087 -153750053 + (CCTTG)n Simple_repeat Simple_repeat 1 283 0 629 80 0 101 chrX 23224134 23224333 -153749807 + (CCTTG)n Simple_repeat Simple_repeat 1 179 0 832 84 31 57 chrX 23224354 23225700 -153748440 + (CCTTG)n Simple_repeat Simple_repeat 1 1311 0 755 116 9 70 chrX 23225734 23226401 -153747739 + (CCTTG)n Simple_repeat Simple_repeat 1 626 0 731 95 31 61 chrX 23226428 23227177 -153746963 + (CCTTG)n Simple_repeat Simple_repeat 1 726 0 955 92 15 51 chrX 23227197 23227794 -153746346 + (CCTTG)n Simple_repeat Simple_repeat 1 761 0 549 112 0 87 chrX 23227806 23228002 -153746138 + (CCTTG)n Simple_repeat Simple_repeat 1 179 0 921 36 5 78 chrX 23228032 23228224 -153745916 + (CCTTG)n Simple_repeat Simple_repeat 1 178 0 841 83 0 80 chrX 23228243 23228524 -153745616 + (CCTTG)n Simple_repeat Simple_repeat 1 258 0 665 82 0 92 chrX 23228539 23228734 -153745406 + (CCTTG)n Simple_repeat Simple_repeat 2 178 0 907 78 0 83 chrX 23228753 23229341 -153744799 + (CCTTG)n Simple_repeat Simple_repeat 2 716 0 989 93 15 68 chrX 23229371 23231566 -153742574 + (CCTTG)n Simple_repeat Simple_repeat 1 2257 0 675 82 0 87 chrX 23231602 23231798 -153742342 + (CCTTG)n Simple_repeat Simple_repeat 2 180 0 841 97 17 56 chrX 23231855 23232236 -153741904 + (CCTTG)n Simple_repeat Simple_repeat 1 366 0 834 115 22 51 chrX 23232274 23233390 -153740750 + (CCTTG)n Simple_repeat Simple_repeat 1 1083 0 424 134 58 35 chrX 23233404 23233525 -153740615 + (CCTTG)n Simple_repeat Simple_repeat 2 130 -46 1714 73 0 9 chrX 23233525 23233745 -153740395 - AluY SINE Alu -11 300 83 424 134 58 35 chrX 23233745 23233794 -153740346 + (CCTTG)n Simple_repeat Simple_repeat 130 176 0 619 111 28 69 chrX 23233808 23234180 -153739960 + (CCTTG)n Simple_repeat Simple_repeat 1 356 0 676 107 0 73 chrX 23234228 23234615 -153739525 + (CCTTG)n Simple_repeat Simple_repeat 1 358 0 872 77 0 72 chrX 23234650 23234844 -153739296 + (CCTTG)n Simple_repeat Simple_repeat 1 180 0 1975 140 13 3 chrX 23236884 23237184 -153736956 + AluJo SINE Alu 1 303 -9 549 238 85 16 chrX 23237202 23237391 -153736749 - L1MC5 LINE L1 -37 7924 7723 1385 122 31 0 chrX 23237588 23237784 -153736356 - AluJo SINE Alu -24 288 87 1869 157 20 13 chrX 23238022 23238321 -153735819 - AluJo SINE Alu -11 301 1 1958 145 142 16 chrX 23241204 23241584 -153732556 + MSTA LTR MaLR 1 428 0 4868 120 39 20 chrX 23242271 23242449 -153731691 - L1MA8 LINE L1 0 6291 6118 757 132 0 52 chrX 23242449 23242585 -153731555 - FLAM_C SINE Alu -4 129 1 4868 120 39 20 chrX 23242585 23243209 -153730931 - L1MA8 LINE L1 -173 6118 5474 2041 107 47 23 chrX 23243209 23243509 -153730631 + AluSx SINE Alu 1 307 -5 2928 153 42 4 chrX 23243510 23244039 -153730101 - L1MA8 LINE L1 -802 5344 4796 346 71 0 0 chrX 23244039 23244081 -153730059 - MSTA LTR MaLR -1 427 386 6259 109 36 3 chrX 23244081 23244956 -153729184 + L1PB1 LINE L1 4891 5816 -335 270 0 0 0 chrX 23244956 23244986 -153729154 + (CA)n Simple_repeat Simple_repeat 2 31 0 6259 109 36 3 chrX 23244986 23245332 -153728808 + L1PB1 LINE L1 5816 6149 -2 186 43 0 0 chrX 23245338 23245361 -153728779 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 459 35 0 0 chrX 23245360 23245417 -153728723 + (GA)n Simple_repeat Simple_repeat 2 58 0 1743 166 72 33 chrX 23245459 23245821 -153728319 - MSTA LTR MaLR -27 401 26 5569 213 48 26 chrX 23245821 23246810 -153727330 - L1M4 LINE L1 -2112 4034 2999 2054 141 7 7 chrX 23246810 23247116 -153727024 - AluSx SINE Alu -6 306 1 5569 213 48 26 chrX 23247116 23247654 -153726486 - L1M4 LINE L1 -3147 2999 2474 646 284 0 5 chrX 23247695 23247892 -153726248 - MIR SINE MIR 0 262 67 2233 114 13 0 chrX 23248193 23248501 -153725639 + AluSq SINE Alu 1 312 -1 1929 198 88 39 chrX 23248504 23248793 -153725347 + L1MA10 LINE L1 5825 6098 -236 1758 126 0 0 chrX 23248793 23249040 -153725100 - AluSx SINE Alu -9 303 57 1929 198 88 39 chrX 23249040 23249090 -153725050 + L1MA10 LINE L1 6098 6144 -190 1577 151 12 23 chrX 23249090 23249348 -153724792 + AluJo SINE Alu 11 265 -47 318 87 0 0 chrX 23249357 23249403 -153724737 + (CA)n Simple_repeat Simple_repeat 2 47 0 1929 198 88 39 chrX 23249403 23249538 -153724602 + L1MA10 LINE L1 6151 6334 0 390 185 131 4 chrX 23250106 23250247 -153723893 + L1MD3 LINE L1 6200 7987 -2 1028 156 0 12 chrX 23250578 23250745 -153723395 + FRAM SINE Alu 2 166 0 1867 178 57 0 chrX 23251057 23251406 -153722734 + L1MA9 LINE L1 5767 6135 -177 1478 142 0 0 chrX 23251406 23251618 -153722522 - AluSg/x SINE Alu -17 295 84 906 198 0 12 chrX 23251649 23251816 -153722324 - AluJb SINE Alu -8 304 140 1250 169 0 0 chrX 23252061 23252244 -153721896 - AluJo SINE Alu -125 187 5 351 265 26 17 chrX 23252628 23252745 -153721395 + MER5B DNA MER1_type 61 178 0 360 0 0 0 chrX 23252823 23252863 -153721277 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 1944 134 0 4 chrX 23252870 23253147 -153720993 - AluJb SINE Alu -36 276 1 2550 47 0 3 chrX 23253410 23253710 -153720430 + AluY SINE Alu 1 299 -12 819 70 0 0 chrX 23253868 23253968 -153720172 + AluSp/q SINE Alu 198 297 -16 1801 170 31 0 chrX 23254196 23254490 -153719650 + AluJb SINE Alu 1 303 -9 650 233 86 14 chrX 23255448 23255658 -153718482 - L1ME3 LINE L1 -16 6146 5922 315 267 0 0 chrX 23256061 23256136 -153718004 + L2 LINE L2 3236 3310 -3 1858 124 6 64 chrX 23256345 23256659 -153717481 - AluJo SINE Alu -16 296 1 1345 226 7 14 chrX 23256900 23257175 -153716965 + AluJo SINE Alu 1 273 -39 671 92 16 65 chrX 23257242 23257426 -153716714 + (CAAGG)n Simple_repeat Simple_repeat 3 177 0 780 87 61 33 chrX 23257438 23257745 -153716395 + (CAAGG)n Simple_repeat Simple_repeat 1 315 0 745 103 2 75 chrX 23257761 23258203 -153715937 + (CAAGG)n Simple_repeat Simple_repeat 1 409 0 760 115 26 59 chrX 23258257 23258704 -153715436 + (CAAGG)n Simple_repeat Simple_repeat 1 432 0 811 66 0 82 chrX 23258726 23258922 -153715218 + (CAAGG)n Simple_repeat Simple_repeat 1 180 0 689 79 13 84 chrX 23258935 23259194 -153714946 + (CAAGG)n Simple_repeat Simple_repeat 1 240 0 628 129 19 65 chrX 23259245 23259714 -153714426 + (CAAGG)n Simple_repeat Simple_repeat 1 447 0 568 126 23 56 chrX 23259753 23260033 -153714107 + (CAAGG)n Simple_repeat Simple_repeat 1 270 0 722 98 23 63 chrX 23260044 23260573 -153713567 + (CAAGG)n Simple_repeat Simple_repeat 1 507 0 321 142 90 15 chrX 23260590 23260724 -153713416 + (CAAGG)n Simple_repeat Simple_repeat 5 148 0 270 129 71 29 chrX 23260743 23260813 -153713327 + (CAAGG)n Simple_repeat Simple_repeat 1 73 0 628 113 0 77 chrX 23260827 23261021 -153713119 + (CAAGG)n Simple_repeat Simple_repeat 2 180 0 759 93 16 55 chrX 23261049 23261232 -153712908 + (CAAGG)n Simple_repeat Simple_repeat 1 176 0 700 95 5 69 chrX 23261263 23261452 -153712688 + (CAAGG)n Simple_repeat Simple_repeat 1 177 0 576 81 75 46 chrX 23261523 23261697 -153712443 + (CAAGG)n Simple_repeat Simple_repeat 1 179 0 640 115 47 46 chrX 23261730 23262079 -153712061 + (CAAGG)n Simple_repeat Simple_repeat 1 349 0 737 96 16 59 chrX 23262121 23262308 -153711832 + (CAAGG)n Simple_repeat Simple_repeat 1 179 0 645 82 0 93 chrX 23262322 23262516 -153711624 + (CAAGG)n Simple_repeat Simple_repeat 2 177 0 712 82 0 82 chrX 23262553 23262749 -153711391 + (CAAGG)n Simple_repeat Simple_repeat 1 180 0 499 118 56 45 chrX 23262790 23262968 -153711172 + (CAAGG)n Simple_repeat Simple_repeat 1 180 0 884 74 32 49 chrX 23262997 23263411 -153710729 + (CAAGG)n Simple_repeat Simple_repeat 1 406 0 676 98 14 68 chrX 23263439 23263674 -153710466 + (CAAGG)n Simple_repeat Simple_repeat 1 222 0 510 252 150 39 chrX 23263814 23264127 -153710013 + HAL1 LINE L1 1122 1482 -1025 2121 119 3 3 chrX 23264127 23264421 -153709719 + AluSq SINE Alu 1 294 -19 510 252 150 39 chrX 23264421 23264468 -153709672 + HAL1 LINE L1 1482 1522 -985 1849 174 56 34 chrX 23264514 23264931 -153709209 - LTR8 LTR ERV1 0 691 307 448 163 201 121 chrX 23264945 23265102 -153709038 - LTR8A LTR ERV1 -487 204 20 2135 71 49 0 chrX 23265102 23265369 -153708771 + AluYa5 SINE Alu 1 320 0 281 0 50 0 chrX 23265369 23265409 -153708731 + (CAAAA)n Simple_repeat Simple_repeat 1 165 0 448 163 201 121 chrX 23265409 23265431 -153708709 - LTR8A LTR ERV1 -671 20 1 548 296 83 11 chrX 23265458 23265735 -153708405 + HAL1 LINE L1 1607 1903 -604 1365 107 8 0 chrX 23266207 23266425 -153707715 + L1PA11 LINE L1 5950 6150 -4 1412 196 48 33 chrX 23266444 23266858 -153707282 - LTR48B LTR ERV1 0 644 174 261 176 324 0 chrX 23266946 23267020 -153707120 - MER39 LTR ERV1 -608 99 2 1917 172 87 18 chrX 23267104 23267540 -153706600 - MER31B LTR ERV1 0 466 1 229 340 135 40 chrX 23267814 23268058 -153706082 + L2 LINE L2 1933 2225 -1089 4200 172 77 49 chrX 23268058 23269051 -153705089 - LTR28 LTR ERV1 0 1020 1 229 340 135 40 chrX 23269051 23269176 -153704964 + L2 LINE L2 2225 2337 -977 1197 212 108 8 chrX 23269188 23269659 -153704481 + L1MB7 LINE L1 2948 3465 -2681 1286 163 4 4 chrX 23269698 23269925 -153704215 - MLT2B1 LTR ERVL -293 227 1 3925 201 99 28 chrX 23269944 23270080 -153704060 + L1MB7 LINE L1 3725 3850 -2334 2016 143 109 20 chrX 23270080 23270473 -153703667 - MSTA LTR MaLR 0 428 1 3925 201 99 28 chrX 23270473 23271608 -153702532 + L1MB7 LINE L1 3850 4904 -1280 2149 88 35 0 chrX 23271608 23271892 -153702248 + AluSq SINE Alu 1 294 -19 2339 79 0 0 chrX 23271894 23272202 -153701938 + AluSc SINE Alu 1 308 0 3925 201 99 28 chrX 23272202 23272563 -153701577 + L1MB7 LINE L1 4904 5238 -946 1832 150 0 0 chrX 23272563 23272843 -153701297 - AluJb SINE Alu -30 282 3 3925 201 99 28 chrX 23272843 23273161 -153700979 + L1MB7 LINE L1 5238 5532 -652 2426 97 3 0 chrX 23273161 23273470 -153700670 + AluSp SINE Alu 1 310 -3 3925 201 99 28 chrX 23273470 23273798 -153700342 + L1MB7 LINE L1 5532 6168 -16 562 243 21 0 chrX 23273934 23274078 -153700062 + MLT1H1 LTR MaLR 407 553 -2 2304 122 0 0 chrX 23274156 23274468 -153699672 + AluSx SINE Alu 1 312 0 431 252 9 0 chrX 23274964 23275071 -153699069 + MIR SINE MIR 82 189 -73 1097 41 0 0 chrX 23275091 23275237 -153698903 - L1PA5 LINE L1 -84 6070 5925 391 19 39 0 chrX 23275237 23275285 -153698855 + L1PA6 LINE L1 6099 6152 -2 32376 32 2 0 chrX 23275455 23280318 -153693822 + L1PA4 LINE L1 1283 6152 -3 1202 182 0 78 chrX 23280363 23280605 -153693535 + MER58A DNA MER1_type 1 223 -1 1995 115 7 11 chrX 23280782 23281069 -153693071 + AluSx SINE Alu 1 286 -26 359 326 60 38 chrX 23281493 23281677 -153692463 + MIR SINE MIR 33 220 -42 1919 142 3 35 chrX 23281698 23282009 -153692131 + AluJo SINE Alu 1 301 -11 1375 207 35 31 chrX 23282018 23282308 -153691832 + AluJo SINE Alu 1 291 -21 1161 166 221 28 chrX 23282322 23282575 -153691565 - AluJo SINE Alu 0 302 1 221 219 12 0 chrX 23282907 23282979 -153691161 + L2 LINE L2 2889 2964 -310 1008 58 0 0 chrX 23283272 23283393 -153690747 - AluY SINE Alu -189 122 2 195 314 29 0 chrX 23283833 23283903 -153690237 + L2 LINE L2 3231 3302 -11 560 175 103 48 chrX 23284421 23284547 -153689593 - FLAM_A SINE Alu 0 133 1 2344 62 0 42 chrX 23284904 23285211 -153688929 + AluY SINE Alu 1 294 -17 221 354 103 14 chrX 23285945 23286168 -153687972 + L2 LINE L2 2719 2961 -353 406 401 22 9 chrX 23288129 23288351 -153685789 - L3 LINE CR1 -909 668 444 245 365 27 0 chrX 23288469 23288543 -153685597 + MIR SINE MIR 19 94 -168 430 282 17 8 chrX 23288595 23288712 -153685428 + MIR SINE MIR 90 207 -55 2217 149 60 14 chrX 23288771 23289188 -153684952 + L1MB7 LINE L1 5741 6176 -8 1259 118 168 1 chrX 23289897 23290181 -153683959 - MER33 DNA MER1_type 0 324 1 2394 194 64 43 chrX 23291719 23292300 -153681840 + MLT1E LTR MaLR 1 593 0 331 288 119 0 chrX 23292501 23292619 -153681521 - L2 LINE L2 -9 3304 3173 2548 53 0 31 chrX 23293474 23293795 -153680345 + AluY SINE Alu 1 311 0 233 207 33 58 chrX 23293913 23294034 -153680106 + A-rich Low_complexity Low_complexity 4 121 0 875 243 70 0 chrX 23294067 23294359 -153679781 + L1ME LINE L1 5504 5818 -352 719 258 107 51 chrX 23294797 23295234 -153678906 + L1MEd LINE L1 988 1499 -991 192 152 0 0 chrX 23295350 23295383 -153678757 + A-rich Low_complexity Low_complexity 1 33 0 254 383 42 33 chrX 23295747 23295987 -153678153 + L3 LINE CR1 133 374 -1203 27 62 0 0 chrX 23296008 23296056 -153678084 + AT_rich Low_complexity Low_complexity 1 48 0 300 256 53 111 chrX 23296235 23296442 -153677698 + MIR3 SINE MIR 8 202 -6 800 296 108 78 chrX 23296452 23297044 -153677096 + L3 LINE CR1 655 1264 -313 262 308 15 62 chrX 23297107 23297237 -153676903 + L3 LINE CR1 1452 1575 -2 190 302 0 32 chrX 23297293 23297356 -153676784 - MIR SINE MIR -1 261 201 253 333 17 85 chrX 23298002 23298179 -153675961 - MIR3 SINE MIR -3 205 41 21 36 0 0 chrX 23298857 23298885 -153675255 + AT_rich Low_complexity Low_complexity 1 28 0 2333 90 0 10 chrX 23299143 23299442 -153674698 - AluSc SINE Alu -13 296 1 319 277 39 82 chrX 23301518 23301619 -153672521 + L2 LINE L2 1803 1907 -1407 2485 65 0 0 chrX 23301619 23301911 -153672229 + AluSc SINE Alu 1 292 -17 319 277 39 82 chrX 23301911 23302040 -153672100 + L2 LINE L2 1907 2023 -1291 1805 178 4 0 chrX 23302058 23302339 -153671801 + AluJo SINE Alu 1 282 -30 189 0 0 0 chrX 23302339 23302360 -153671780 + (TA)n Simple_repeat Simple_repeat 2 22 0 2037 138 14 0 chrX 23302520 23302810 -153671330 - AluSx SINE Alu -18 294 1 522 301 107 5 chrX 23303813 23304009 -153670131 + MIR SINE MIR 3 218 -44 2514 74 3 0 chrX 23304147 23304457 -153669683 + AluSp SINE Alu 1 311 -2 24 0 0 0 chrX 23304458 23304482 -153669658 + AT_rich Low_complexity Low_complexity 1 24 0 235 372 83 16 chrX 23304522 23304643 -153669497 + MIR SINE MIR 19 147 -61 2349 89 3 0 chrX 23305057 23305361 -153668779 - AluSp SINE Alu -8 305 1 206 398 64 23 chrX 23306279 23306450 -153667690 + MIR3 SINE MIR 14 191 -17 2138 112 7 0 chrX 23306825 23307120 -153667020 + AluSx SINE Alu 1 297 -15 407 158 79 0 chrX 23307148 23307313 -153666827 + (TA)n Simple_repeat Simple_repeat 1 178 0 253 309 103 48 chrX 23307350 23307515 -153666625 + MIR SINE MIR 39 212 -50 1373 96 0 0 chrX 23307594 23307772 -153666368 - AluSp SINE Alu -2 311 134 2506 37 7 3 chrX 23307772 23308066 -153666074 - AluY SINE Alu -15 296 2 248 111 19 0 chrX 23309746 23309800 -153664340 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 671 169 69 0 chrX 23310562 23310692 -153663448 - MER33 DNA MER1_type -184 140 2 228 176 0 20 chrX 23310826 23310877 -153663263 + (TTG)n Simple_repeat Simple_repeat 2 51 0 418 205 41 8 chrX 23311348 23311470 -153662670 + L1MC5 LINE L1 7719 7844 -117 2350 128 0 0 chrX 23312640 23312952 -153661188 + AluSx SINE Alu 1 312 0 2588 62 0 0 chrX 23313174 23313482 -153660658 + AluY SINE Alu 2 309 -2 1900 102 80 11 chrX 23313729 23314003 -153660137 + AluSx SINE Alu 1 293 -19 200 80 0 100 chrX 23314370 23314420 -153659720 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 2110 81 4 7 chrX 23314747 23315020 -153659120 + AluY SINE Alu 31 302 -9 35 0 0 0 chrX 23516554 23516589 -153457551 + AT_rich Low_complexity Low_complexity 1 35 0 287 128 0 0 chrX 23517083 23517122 -153457018 - FLAM_A SINE Alu -12 121 83 739 160 0 0 chrX 23517122 23517228 -153456912 - FLAM_A SINE Alu -36 106 1 716 292 111 46 chrX 23517506 23517921 -153456219 - MLT1H1 LTR MaLR -5 550 109 1850 142 35 3 chrX 23518022 23518144 -153455996 + AluJb SINE Alu 1 118 -194 222 37 0 0 chrX 23518144 23518171 -153455969 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1850 142 35 3 chrX 23518171 23518330 -153455810 + AluJb SINE Alu 118 291 -21 281 317 41 28 chrX 23518920 23519065 -153455075 + MIR SINE MIR 116 262 0 371 181 0 14 chrX 23519599 23519671 -153454469 + HsTC2 DNA Tc2 4 74 -1824 458 269 28 9 chrX 23520439 23520547 -153453593 + MIR3 SINE MIR 46 155 -53 445 262 234 7 chrX 23521449 23521590 -153452550 + L2 LINE L2 3136 3308 -5 694 61 0 51 chrX 23521613 23521657 -153452483 + L1MA2 LINE L1 6212 6257 -47 2308 103 0 7 chrX 23521657 23521959 -153452181 + AluSx SINE Alu 1 300 -12 694 61 0 51 chrX 23521959 23522012 -153452128 + L1MA2 LINE L1 6257 6304 0 228 321 49 0 chrX 23523027 23523108 -153451032 + L2 LINE L2 3173 3257 -15 2222 118 0 0 chrX 23523262 23523567 -153450573 - AluSx SINE Alu -6 306 2 791 151 44 63 chrX 23524308 23524467 -153449673 + MIR SINE MIR 77 232 -30 197 329 29 0 chrX 23525644 23525714 -153448426 + MIR3 SINE MIR 104 175 -33 371 215 37 37 chrX 23526498 23526605 -153447535 + MIR SINE MIR 124 230 -32 1219 131 56 49 chrX 23526910 23527093 -153447047 + MER33 DNA MER1_type 55 243 -2342 2169 96 0 0 chrX 23527093 23527401 -153446739 - AluY SINE Alu 0 308 1 1219 131 56 49 chrX 23527401 23527483 -153446657 + MER33 DNA MER1_type 243 323 -1 443 180 80 30 chrX 23527526 23527626 -153446514 + L2 LINE L2 3168 3272 0 1178 243 93 27 chrX 23528014 23528380 -153445760 + LTR16C LTR ERVL 4 393 -98 2679 159 19 47 chrX 23528381 23528895 -153445245 + MLT1D LTR MaLR 6 505 0 485 218 0 0 chrX 23528895 23528981 -153445159 + LTR16C LTR ERVL 385 470 -21 826 159 129 29 chrX 23529605 23529775 -153444365 + MER5A DNA MER1_type 2 188 -1 685 262 110 5 chrX 23530425 23530616 -153443524 + MER58A DNA MER1_type 6 216 -8 505 287 57 29 chrX 23532312 23532577 -153441563 - MLT1J2 LTR MaLR -124 285 17 327 104 0 0 chrX 23532772 23532820 -153441320 + (A)n Simple_repeat Simple_repeat 1 48 0 223 163 23 23 chrX 23532995 23533038 -153441102 + L2 LINE L2 3207 3249 -23 183 80 0 0 chrX 23533321 23533346 -153440794 + (TG)n Simple_repeat Simple_repeat 2 26 0 677 183 57 80 chrX 23533498 23533673 -153440467 - MER5A DNA MER1_type -2 187 17 1275 150 13 44 chrX 23535493 23535719 -153438421 - MER20 DNA MER1_type 0 219 1 490 196 209 26 chrX 23535909 23536062 -153438078 - MER5A DNA MER1_type 0 189 9 3247 186 83 11 chrX 23536879 23537519 -153436621 - MER76 LTR ERV -2 686 1 1204 89 0 6 chrX 23537934 23538091 -153436049 + L1PB1 LINE L1 5996 6151 0 322 241 0 0 chrX 23538579 23538658 -153435482 - L1MC4 LINE L1 -1350 6692 6614 204 125 0 0 chrX 23538659 23538691 -153435449 + (TA)n Simple_repeat Simple_repeat 1 32 0 248 169 200 15 chrX 23538691 23538756 -153435384 - L1ME LINE L1 -5982 88 12 2808 200 15 10 chrX 23538934 23539455 -153434685 - MLT1F LTR MaLR -12 530 7 4387 123 34 8 chrX 23539509 23539864 -153434276 - L1PB4 LINE L1 0 6156 5773 243 0 0 0 chrX 23539864 23539891 -153434249 + (TG)n Simple_repeat Simple_repeat 2 28 0 4387 123 34 8 chrX 23539891 23540204 -153433936 - L1PB4 LINE L1 -383 5773 5470 212 368 40 23 chrX 23540595 23540769 -153433371 - L2 LINE L2 -2103 1211 1035 1068 47 0 0 chrX 23540801 23540930 -153433210 + AluY SINE Alu 171 299 -12 2611 160 11 40 chrX 23541441 23541886 -153432254 + MSTB1 LTR MaLR 1 432 0 405 0 0 0 chrX 23541907 23541952 -153432188 + (TG)n Simple_repeat Simple_repeat 2 46 0 753 125 0 0 chrX 23542451 23542563 -153431577 - L1M2 LINE L1 -531 5769 5658 1774 183 0 10 chrX 23542579 23542880 -153431260 + AluJo SINE Alu 1 298 -14 756 295 39 50 chrX 23543125 23543586 -153430554 + L1ME LINE L1 18 473 -5597 4592 177 55 3 chrX 23543904 23544229 -153429911 - Charlie1a DNA MER1_type -1362 1399 1092 330 115 0 0 chrX 23544229 23544281 -153429859 + (CA)n Simple_repeat Simple_repeat 1 52 0 4592 177 55 3 chrX 23544281 23544827 -153429313 - Charlie1a DNA MER1_type -1669 1092 483 717 214 316 19 chrX 23544858 23545124 -153429016 - Charlie1a DNA MER1_type -1100 355 11 1267 80 6 0 chrX 23545441 23545603 -153428537 + L1PA10 LINE L1 6005 6167 -1 837 219 6 0 chrX 23545855 23546024 -153428116 - MER5B DNA MER1_type -8 170 1 284 247 26 39 chrX 23546793 23546870 -153427270 + MER5C DNA MER1_type 1 76 -248 1629 280 72 14 chrX 23547508 23547997 -153426143 - LTR33 LTR ERVL 0 521 5 356 188 0 14 chrX 23548017 23548086 -153426054 + HsTC2 DNA Tc2 1811 1878 -20 625 301 29 6 chrX 23548119 23548292 -153425848 - MIR3 SINE MIR -11 197 21 459 0 0 0 chrX 23548678 23548729 -153425411 + (CA)n Simple_repeat Simple_repeat 2 52 0 424 253 0 0 chrX 23548961 23549060 -153425080 - MER5A DNA MER1_type -83 106 8 282 175 35 0 chrX 23549171 23549228 -153424912 + MIR SINE MIR 63 121 -141 222 176 0 0 chrX 23549274 23549308 -153424832 + MIR SINE MIR 218 251 -11 2000 108 11 4 chrX 23549584 23549861 -153424279 + L1PA15 LINE L1 5883 6161 -4 260 102 20 0 chrX 23550129 23550178 -153423962 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 399 123 55 0 chrX 23550229 23550302 -153423838 + L1MB1 LINE L1 6092 6168 0 2675 139 85 4 chrX 23550302 23550779 -153423361 + L1MC2 LINE L1 5814 6333 -11 220 175 0 35 chrX 23552171 23552228 -153421912 + A-rich Low_complexity Low_complexity 5 59 0 369 375 31 5 chrX 23553124 23553318 -153420822 - MIR SINE MIR -50 212 15 257 284 88 54 chrX 23553449 23553597 -153420543 - MER5A DNA MER1_type 0 189 37 2482 50 0 17 chrX 23553961 23554258 -153419882 + AluY SINE Alu 1 292 -19 1353 158 22 0 chrX 23554806 23555034 -153419106 - L1MA6 LINE L1 0 6300 6068 328 274 27 0 chrX 23555078 23555190 -153418950 + MIR3 SINE MIR 87 202 -6 530 308 147 42 chrX 23555202 23555720 -153418420 - L2 LINE L2 -1 3312 2729 237 289 53 18 chrX 23555749 23555863 -153418277 + L1MC4 LINE L1 7922 8039 -3 1166 321 79 25 chrX 23555876 23556508 -153417632 - L2 LINE L2 -619 2695 2030 306 306 149 0 chrX 23556509 23556643 -153417497 - L1MC/D LINE L1 -2037 5771 5618 346 236 22 0 chrX 23556760 23556849 -153417291 + L1MC4a LINE L1 5759 5849 -1959 38 39 0 0 chrX 23557139 23557191 -153416949 + AT_rich Low_complexity Low_complexity 1 52 0 428 330 85 6 chrX 23557808 23557984 -153416156 + MIR3 SINE MIR 19 208 0 240 217 0 0 chrX 23558124 23558170 -153415970 + MLT1I LTR MaLR 98 143 -266 366 326 39 0 chrX 23558689 23558818 -153415322 - MER94 DNA DNA 0 134 1 870 340 21 21 chrX 23561180 23561515 -153412625 + LTR16C LTR ERVL 98 432 -59 180 322 111 0 chrX 23561539 23561629 -153412511 - L2 LINE L2 -34 3279 3180 959 209 94 44 chrX 23561740 23562181 -153411959 + MLT1J LTR MaLR 5 511 0 1999 110 55 14 chrX 23562671 23562962 -153411178 + AluSq SINE Alu 1 303 -10 207 237 165 10 chrX 23563130 23563227 -153410913 + L2 LINE L2 3201 3312 -1 353 227 282 9 chrX 23564602 23564712 -153409428 - MIR SINE MIR -40 222 83 2791 131 32 0 chrX 23564783 23565194 -153408946 + MSTA LTR MaLR 5 428 0 3628 154 21 24 chrX 23566273 23566986 -153407154 + L1MD2 LINE L1 5511 6221 -138 889 120 0 0 chrX 23566986 23567103 -153407037 + FLAM_C SINE Alu 1 117 -26 420 143 0 0 chrX 23567107 23567177 -153406963 + (TA)n Simple_repeat Simple_repeat 2 71 0 1080 180 0 0 chrX 23567177 23567344 -153406796 + FRAM SINE Alu 1 163 -13 656 204 7 0 chrX 23567344 23567486 -153406654 + L1MD1 LINE L1 6098 6240 -2 990 250 97 77 chrX 23568056 23568600 -153405540 + MLT1H1 LTR MaLR 1 555 0 276 290 114 38 chrX 23569024 23569155 -153404985 - L2 LINE L2 0 3272 3132 3524 134 14 45 chrX 23569763 23570589 -153403551 + L1MA8 LINE L1 4748 5612 -679 2819 10 0 0 chrX 23570589 23570897 -153403243 - AluY SINE Alu -3 308 1 3524 134 14 45 chrX 23570897 23571552 -153402588 + L1MA8 LINE L1 5612 6286 -5 343 328 40 33 chrX 23572031 23572360 -153401780 - LTR16C LTR ERVL -89 402 72 464 298 111 15 chrX 23573558 23573820 -153400320 - LTR16A1 LTR ERVL -8 449 163 272 299 106 69 chrX 23574266 23574671 -153399469 + MLT1K LTR MaLR 168 587 -1 545 333 63 0 chrX 23574673 23574910 -153399230 - MIR SINE MIR -1 261 10 21 36 0 0 chrX 23575367 23575395 -153398745 + AT_rich Low_complexity Low_complexity 1 28 0 697 278 34 19 chrX 23577685 23577890 -153396250 + MIR SINE MIR 4 211 -51 1960 165 114 7 chrX 23578397 23578866 -153395274 + MER68 LTR ERV1 1 562 0 863 151 14 0 chrX 23580287 23580421 -153393719 + Tigger7 DNA MER2_type 2 137 -596 473 155 21 10 chrX 23580421 23580518 -153393622 + MER4A LTR ERV1 1 98 -566 * 1752 138 3 21 chrX 23580514 23580870 -153393270 + MER4A LTR ERV1 257 664 0 1374 183 14 46 chrX 23580870 23581154 -153392986 + Tigger7 DNA MER2_type 133 407 -2080 384 188 12 0 chrX 23581171 23581251 -153392889 + Tigger7 DNA MER2_type 2411 2491 0 224 239 0 0 chrX 23581722 23581768 -153392372 - MER5A DNA MER1_type -97 92 47 2461 229 22 21 chrX 23581769 23582351 -153391789 + MER119 DNA MER1_type 1 583 0 181 306 20 0 chrX 23582351 23582400 -153391740 - MER5A DNA MER1_type -136 53 4 191 283 0 0 chrX 23582419 23582465 -153391675 - MIR SINE MIR -55 153 108 326 330 53 34 chrX 23583194 23583458 -153390682 - L2 LINE L2 -508 2806 2538 220 291 114 13 chrX 23584000 23584079 -153390061 + MIR SINE MIR 20 106 -156 300 200 0 0 chrX 23584405 23584470 -153389670 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 1309 241 36 87 chrX 23584959 23585637 -153388503 - L1ME3 LINE L1 -211 5951 5309 1056 171 78 0 chrX 23585637 23585830 -153388310 + MER6B DNA MER2_type 3 210 0 1309 241 36 87 chrX 23585830 23585851 -153388289 - L1ME3 LINE L1 -853 5309 5288 3709 170 20 5 chrX 23585904 23586644 -153387496 + L1 LINE L1 3528 4278 -1868 266 227 34 11 chrX 23586805 23586893 -153387247 - L1MC5 LINE L1 -42 7919 7830 3903 208 54 18 chrX 23586929 23588819 -153385321 - L1MB7 LINE L1 -11 6173 4212 396 299 71 63 chrX 23588819 23589206 -153384934 - L1MB7 LINE L1 -2263 3883 3497 247 349 0 0 chrX 23589364 23589447 -153384693 - MIR3 SINE MIR -8 200 118 2348 190 17 70 chrX 23593307 23593892 -153380248 + MLT2B3 LTR ERVL 1 554 0 1204 297 59 0 chrX 23594850 23595240 -153378900 + L2 LINE L2 2540 2952 -362 281 221 52 39 chrX 23595359 23595436 -153378704 + L2 LINE L2 2944 3021 -292 221 217 0 0 chrX 23595441 23595487 -153378653 + L2 LINE L2 3222 3267 -5 1528 141 188 16 chrX 23596167 23596486 -153377654 + THE1C LTR MaLR 1 374 -1 251 299 65 19 chrX 23597239 23597346 -153376794 + L2 LINE L2 3187 3298 -15 185 314 32 40 chrX 23598034 23598158 -153375982 - MIR SINE MIR -39 223 101 215 216 0 39 chrX 23598161 23598212 -153375928 + (CATA)n Simple_repeat Simple_repeat 1 49 0 2325 175 43 7 chrX 23599738 23600184 -153373956 + LTR32 LTR ERVL 10 471 0 783 229 11 0 chrX 23600701 23600876 -153373264 + MER5B DNA MER1_type 2 178 0 1603 200 30 0 chrX 23601062 23601392 -153372748 + MER58B DNA MER1_type 2 341 0 4569 149 95 28 chrX 23601403 23602274 -153371866 - MER21A LTR ERV1 -1 930 1 327 25 0 0 chrX 23602285 23602325 -153371815 + (CA)n Simple_repeat Simple_repeat 1 40 0 368 348 62 14 chrX 23603170 23603446 -153370694 + L2 LINE L2 2804 3092 -180 1520 285 42 11 chrX 23604111 23604584 -153369556 + LTR16C LTR ERVL 1 488 -3 782 258 43 85 chrX 23605878 23606049 -153368091 + LTR16A1 LTR ERVL 13 190 -267 680 150 83 33 chrX 23606049 23606229 -153367911 - MER53 DNA DNA 0 189 1 782 258 43 85 chrX 23606229 23606518 -153367622 + LTR16A1 LTR ERVL 190 454 -3 2514 72 0 0 chrX 23607540 23607846 -153366294 + AluY SINE Alu 1 306 -5 977 177 13 13 chrX 23608058 23608216 -153365924 - FRAM SINE Alu -21 155 1 30 0 0 0 chrX 23609004 23609034 -153365106 + AT_rich Low_complexity Low_complexity 1 30 0 428 300 17 0 chrX 23609935 23610055 -153364085 + L2 LINE L2 3190 3311 -2 284 260 78 0 chrX 23610938 23611015 -153363125 + LTR50 LTR ERVL 15 97 -698 195 341 70 31 chrX 23611043 23611156 -153362984 - L2 LINE L2 -2 3270 3150 300 53 0 0 chrX 23611156 23611194 -153362946 + (TG)n Simple_repeat Simple_repeat 2 39 0 195 341 70 31 chrX 23611194 23611209 -153362931 - L2 LINE L2 -122 3150 3137 715 192 0 23 chrX 23611551 23611681 -153362459 + FLAM_A SINE Alu 3 129 -4 419 236 36 0 chrX 23613365 23613475 -153360665 - MER20B DNA MER1_type -635 148 35 873 248 62 29 chrX 23614189 23614431 -153359709 - MIR SINE MIR 0 262 13 203 365 71 34 chrX 23614527 23614765 -153359375 - L2 LINE L2 -594 2720 2474 233 308 62 39 chrX 23614912 23615042 -153359098 + L2 LINE L2 3138 3270 -2 315 149 253 23 chrX 23615112 23615199 -153358941 + L2 LINE L2 3207 3313 0 356 277 34 20 chrX 23616312 23616460 -153357680 + MLT2C1 LTR ERVL 48 197 -200 * 1743 218 70 53 chrX 23616356 23616884 -153357256 + MLT1E2 LTR MaLR 88 624 -2 1449 177 17 100 chrX 23616986 23617172 -153356968 + MER58B DNA MER1_type 5 150 -2270 5498 109 26 4 chrX 23617172 23618421 -153355719 - L1PA16 LINE L1 -9 6157 4882 1449 177 17 100 chrX 23618421 23618584 -153355556 + MER58B DNA MER1_type 150 325 -16 589 311 47 0 chrX 23619086 23619279 -153354861 - MIR SINE MIR -6 256 55 2260 107 0 0 chrX 23619991 23620282 -153353858 - AluSx SINE Alu -21 291 1 404 283 10 0 chrX 23620286 23620385 -153353755 - L2 LINE L2 -11 3302 3203 672 270 75 15 chrX 23620417 23620750 -153353390 + L1MDa LINE L1 1648 2000 -4540 212 204 29 48 chrX 23621244 23621347 -153352793 + (TA)n Simple_repeat Simple_repeat 1 101 0 581 237 29 6 chrX 23621360 23621533 -153352607 + L1MDa LINE L1 2615 2791 -3749 * 874 329 8 0 chrX 23621531 23621902 -153352238 + L1ME3A LINE L1 5270 5643 -521 269 286 13 0 chrX 23621921 23621998 -153352142 + MER112 DNA MER1_type 8 85 -175 222 37 0 0 chrX 23622005 23622032 -153352108 + (CA)n Simple_repeat Simple_repeat 2 28 0 398 245 98 8 chrX 23622236 23622470 -153351670 + L1ME3A LINE L1 5686 5950 -214 2242 255 17 25 chrX 23622933 23623537 -153350603 - MER90 LTR ERV1 -15 599 1 2169 136 0 7 chrX 23623830 23624139 -153350001 + AluSx SINE Alu 1 307 -5 180 234 0 0 chrX 23625504 23625551 -153348589 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 597 238 88 19 chrX 23625553 23625713 -153348427 - L2 LINE L2 0 3313 3143 244 247 104 0 chrX 23625741 23625818 -153348322 - MLT1J2 LTR MaLR 0 450 366 222 37 0 0 chrX 23626377 23626404 -153347736 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1073 329 61 11 chrX 23626752 23627726 -153346414 + L1MDa LINE L1 1121 2142 -4579 379 318 5 14 chrX 23627720 23627937 -153346203 + L1MDa LINE L1 2867 3081 -3459 * 752 293 9 24 chrX 23627956 23628294 -153345846 + L1M4 LINE L1 4962 5294 -852 7205 123 10 35 chrX 23628502 23630273 -153343867 + L1MA3 LINE L1 4562 6299 -6 1587 158 55 4 chrX 23631083 23631356 -153342784 + AluJo SINE Alu 1 287 -25 300 70 0 0 chrX 23631444 23631487 -153342653 + (TC)n Simple_repeat Simple_repeat 2 44 0 240 35 0 0 chrX 23631487 23631516 -153342624 + (CA)n Simple_repeat Simple_repeat 1 29 0 293 143 0 0 chrX 23632482 23632524 -153341616 - 5S rRNA rRNA -79 42 1 658 295 45 5 chrX 23632592 23632792 -153341348 + MIR SINE MIR 26 233 -29 545 219 180 8 chrX 23632854 23632982 -153341158 + MER5A DNA MER1_type 10 159 -30 758 273 0 6 chrX 23633014 23633186 -153340954 - MER5B DNA MER1_type -7 171 1 264 280 68 45 chrX 23633663 23633795 -153340345 - L2 LINE L2 0 3313 3179 337 119 0 51 chrX 23633843 23633902 -153340238 + MLT1D LTR MaLR 450 505 0 316 357 35 0 chrX 23633955 23634098 -153340042 + L2 LINE L2 711 858 -2456 215 240 20 0 chrX 23634442 23634492 -153339648 + GA-rich Low_complexity Low_complexity 3 53 0 24 0 0 0 chrX 23634574 23634598 -153339542 + AT_rich Low_complexity Low_complexity 1 24 0 710 341 58 30 chrX 23634632 23635031 -153339109 + L2 LINE L2 2568 2977 -337 1302 263 68 11 chrX 23635052 23635433 -153338707 + MLT1I LTR MaLR 5 407 -2 185 343 0 69 chrX 23635456 23635558 -153338582 + L2 LINE L2 2988 3082 -231 637 248 41 89 chrX 23636052 23636298 -153337842 + MIR SINE MIR 3 236 -26 1186 276 90 28 chrX 23636315 23636772 -153337368 + MLT1J LTR MaLR 12 496 -15 2101 121 53 36 chrX 23637271 23637627 -153336513 + THE1B LTR MaLR 1 362 -2 11519 87 20 8 chrX 23637629 23637898 -153336242 + THE1B-int LTR MaLR 1 265 -1315 2418 81 0 0 chrX 23637898 23638195 -153335945 - AluY SINE Alu -14 297 1 11519 87 20 8 chrX 23638195 23639487 -153334653 + THE1B-int LTR MaLR 265 1580 0 2487 106 28 14 chrX 23639487 23639846 -153334294 + THE1B LTR MaLR 1 364 0 428 293 95 14 chrX 23639866 23640013 -153334127 - MIR SINE MIR -84 178 20 216 0 0 0 chrX 23640614 23640638 -153333502 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 448 290 69 0 chrX 23640933 23641078 -153333062 + LTR16C LTR ERVL 337 491 0 377 219 124 39 chrX 23642240 23642391 -153331749 + L1ME4a LINE L1 5794 5973 -148 441 95 0 0 chrX 23642391 23642454 -153331686 + (TA)n Simple_repeat Simple_repeat 2 64 0 377 219 124 39 chrX 23642454 23642535 -153331605 + L1ME4a LINE L1 5973 6046 -75 323 236 11 71 chrX 23642687 23642869 -153331271 + L1ME4a LINE L1 5930 6100 -21 372 164 0 0 chrX 23643570 23643625 -153330515 + Tigger2 DNA MER2_type 6 60 -2658 871 240 6 0 chrX 23643668 23643839 -153330301 - MER8 DNA MER2_type -58 181 10 228 241 35 14 chrX 23643887 23644028 -153330112 + (TA)n Simple_repeat Simple_repeat 1 144 0 846 174 0 0 chrX 23644096 23644268 -153329872 + L1MA4 LINE L1 6127 6298 -2 5436 93 25 1 chrX 23645123 23645910 -153328230 + L1MA1 LINE L1 5497 6302 0 2369 71 3 0 chrX 23645912 23646206 -153327934 - AluY SINE Alu -16 295 1 33 56 0 0 chrX 23646212 23646266 -153327874 + AT_rich Low_complexity Low_complexity 1 54 0 1756 225 121 5 chrX 23647850 23648263 -153325877 + MLT2B1 LTR ERVL 1 461 -59 432 0 0 0 chrX 23648263 23648311 -153325829 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 1212 217 81 4 chrX 23648684 23648956 -153325184 - LTR16A1 LTR ERVL 0 457 165 673 325 41 4 chrX 23649164 23649410 -153324730 - MIR SINE MIR -1 261 7 22 35 0 0 chrX 23649759 23649788 -153324352 + AT_rich Low_complexity Low_complexity 1 29 0 2313 83 0 0 chrX 23649788 23650076 -153324064 - AluSx SINE Alu -24 288 1 2295 84 0 0 chrX 23650198 23650485 -153323655 - AluSc SINE Alu -22 287 1 1868 38 0 0 chrX 23650493 23650705 -153323435 - AluY SINE Alu -14 297 86 1044 223 73 0 chrX 23651621 23651827 -153322313 - MIR SINE MIR 0 262 42 1722 148 28 24 chrX 23653075 23653366 -153320774 + AluJo SINE Alu 1 292 -20 224 230 23 23 chrX 23653400 23653487 -153320653 + (TA)n Simple_repeat Simple_repeat 1 87 0 9063 125 58 11 chrX 23654888 23657151 -153316989 + MER41A-int LTR ERV1 1136 3757 -2189 425 38 0 0 chrX 23657133 23657186 -153316954 + MER41A-int LTR ERV1 4324 4376 -1887 * 11705 101 5 11 chrX 23657189 23657976 -153316164 + MER41A-int LTR ERV1 4293 5083 -863 2184 117 7 7 chrX 23657976 23658284 -153315856 + AluSq SINE Alu 1 308 -5 11705 101 5 11 chrX 23658284 23659158 -153314982 + MER41A-int LTR ERV1 5083 5944 -2 3941 88 32 0 chrX 23659158 23659695 -153314445 + MER41A LTR ERV1 1 554 0 678 231 138 0 chrX 23661369 23661529 -153312611 - MIR SINE MIR -69 193 12 2410 96 13 40 chrX 23661612 23661986 -153312154 - THE1B LTR MaLR 0 364 1 367 175 113 10 chrX 23662001 23662098 -153312042 + MER103 DNA DNA 12 118 -48 633 62 0 0 chrX 23662119 23662199 -153311941 + MADE1 DNA Mariner 1 80 0 270 324 166 32 chrX 23662993 23663240 -153310900 + L2 LINE L2 2698 2977 -337 2745 156 41 6 chrX 23663316 23663802 -153310338 + MLT1D LTR MaLR 1 503 -2 1125 233 88 0 chrX 23663868 23664164 -153309976 + MER5C DNA MER1_type 1 322 -2 816 321 91 19 chrX 23664164 23664528 -153309612 - MLT1I LTR MaLR -14 395 6 347 294 71 16 chrX 23664582 23664708 -153309432 + L2 LINE L2 3140 3272 0 482 221 27 87 chrX 23665182 23665331 -153308809 + MIR SINE MIR 110 249 -13 245 274 11 21 chrX 23665548 23665643 -153308497 + L1ME4a LINE L1 5835 5928 -193 414 100 0 0 chrX 23665649 23665709 -153308431 + (TA)n Simple_repeat Simple_repeat 2 61 0 1597 164 3 21 chrX 23666165 23666491 -153307649 + AluSx SINE Alu 1 321 0 304 314 96 26 chrX 23667134 23667356 -153306784 - L2 LINE L2 -646 2668 2431 420 305 17 8 chrX 23667356 23667474 -153306666 - MER5A DNA MER1_type 0 189 71 209 365 56 60 chrX 23667679 23667836 -153306304 - L2 LINE L2 -1052 2262 2105 4706 71 16 61 chrX 23667836 23668527 -153305613 + PABL_A LTR ERV1 1 660 0 209 365 56 60 chrX 23668527 23668621 -153305519 - L2 LINE L2 -1209 2105 2012 300 269 69 62 chrX 23668642 23668787 -153305353 - ERVL LTR ERVL -4545 1219 1074 207 0 0 0 chrX 23669003 23669026 -153305114 + (CAA)n Simple_repeat Simple_repeat 2 24 0 856 235 67 4 chrX 23669784 23670052 -153304088 - MER58D DNA MER1_type -1 385 101 188 286 89 0 chrX 23670090 23670146 -153303994 + MER5A DNA MER1_type 128 188 -1 618 148 14 49 chrX 23670326 23670468 -153303672 + L1MB7 LINE L1 6048 6184 0 184 286 78 13 chrX 23670470 23670547 -153303593 + MER5B DNA MER1_type 91 172 -6 628 313 29 10 chrX 23670552 23670760 -153303380 + MIR SINE MIR 20 231 -31 876 247 30 49 chrX 23670961 23671051 -153303089 - MIR SINE MIR 0 262 172 3696 101 35 29 chrX 23671051 23671647 -153302493 + MER4A LTR ERV1 1 600 0 876 247 30 49 chrX 23671647 23671823 -153302317 - MIR SINE MIR -90 172 1 2507 44 0 10 chrX 23674452 23674750 -153299390 - AluY SINE Alu -16 295 1 543 262 120 71 chrX 23675041 23675266 -153298874 + MIR SINE MIR 6 241 -21 1028 257 12 4 chrX 23675850 23676095 -153298045 - MIR SINE MIR -11 251 5 325 362 104 24 chrX 23676509 23677095 -153297045 - L2 LINE L2 -750 2564 1932 446 272 121 0 chrX 23677100 23677273 -153296867 + L2 LINE L2 3120 3313 0 696 269 94 24 chrX 23679859 23680071 -153294069 - MIR SINE MIR -30 232 6 631 267 58 53 chrX 23680422 23680853 -153293287 - L1ME LINE L1 -5082 988 556 4778 109 16 3 chrX 23681025 23681770 -153292370 - L1MA2 LINE L1 -3 6301 5547 2316 149 1 2 chrX 23681771 23682369 -153291771 + L1MA3 LINE L1 5015 5612 -690 * 3151 23 2 0 chrX 23682360 23682753 -153291387 - L1PA4 LINE L1 -1492 4654 4261 7455 30 1 1 chrX 23682753 23684228 -153289912 + L1PA4 LINE L1 4675 6148 -7 4252 101 21 48 chrX 23684240 23684921 -153289219 + L1MA3 LINE L1 5593 6254 -51 4668 124 28 27 chrX 23684921 23685704 -153288436 + LTR1 LTR ERV1 1 784 -1 4252 101 21 48 chrX 23685704 23685747 -153288393 + L1MA3 LINE L1 6254 6297 -8 252 270 24 3 chrX 23686221 23686308 -153287832 + MIR SINE MIR 62 154 -54 187 270 63 16 chrX 23686387 23686450 -153287690 - MIR3 SINE MIR -27 181 116 298 353 17 0 chrX 23686840 23686959 -153287181 + MER5C DNA MER1_type 1 121 -203 6795 211 45 9 chrX 23687315 23688927 -153285213 - MER52A LTR ERV1 0 1755 9 434 298 117 24 chrX 23688952 23689200 -153284940 - Charlie8 DNA MER1_type -2143 274 4 401 155 0 21 chrX 23691320 23691417 -153282723 + CT-rich Low_complexity Low_complexity 2 96 0 391 256 66 30 chrX 23692274 23692614 -153281526 + LTR37A LTR ERV1 3 423 -3 180 0 0 0 chrX 23692842 23692862 -153281278 + (TTG)n Simple_repeat Simple_repeat 2 21 0 288 268 36 27 chrX 23693090 23693202 -153280938 + MER31-int LTR ERV1 1029 1141 -3795 381 262 44 63 chrX 23693470 23693727 -153280413 - MIR SINE MIR -9 253 5 555 206 139 28 chrX 23695555 23695899 -153278241 + LTR37A LTR ERV1 10 423 -3 1928 80 42 42 chrX 23695928 23696214 -153277926 + AluY SINE Alu 1 286 -25 469 256 156 43 chrX 23696432 23696643 -153277497 - MLT1D-int LTR MaLR -266 1105 871 862 219 11 0 chrX 23696719 23696902 -153277238 - MLT1D-int LTR MaLR -488 883 699 2632 215 22 36 chrX 23696975 23697641 -153276499 - MLT1D-int LTR MaLR -711 660 4 1650 244 56 10 chrX 23697644 23698127 -153276013 - MLT1D LTR MaLR 0 505 1 431 178 10 30 chrX 23698127 23698228 -153275912 - LTR16C LTR ERVL -67 424 326 382 337 21 11 chrX 23698259 23698446 -153275694 - LTR16C LTR ERVL -302 189 1 297 391 0 27 chrX 23698539 23698649 -153275491 - L2 LINE L2 -43 3229 3123 513 178 108 45 chrX 23698693 23698850 -153275290 - MER20 DNA MER1_type 0 219 53 958 35 0 0 chrX 23699115 23699229 -153274911 + L1PA5 LINE L1 6038 6151 -3 1782 47 21 0 chrX 23699229 23699462 -153274678 + Harlequin LTR ERV1 6659 6896 0 1460 187 76 38 chrX 23699483 23699879 -153274261 + LTR2B LTR ERV1 34 444 -46 9977 223 44 29 chrX 23699892 23703399 -153270741 - L1M4b LINE L1 -960 5997 2476 5067 253 53 21 chrX 23703670 23704503 -153269637 - L1M4b LINE L1 -5055 1800 995 1929 143 34 3 chrX 23704503 23704797 -153269343 + AluJb SINE Alu 1 303 -9 5067 253 53 21 chrX 23704797 23705634 -153268506 - L1M4b LINE L1 -5860 995 96 2287 39 21 0 chrX 23706004 23706288 -153267852 + L1PA5 LINE L1 5865 6154 0 2881 90 47 9 chrX 23706592 23707036 -153267104 + MER4C LTR ERV1 1 461 -4 29 70 0 0 chrX 23707109 23707166 -153266974 + AT_rich Low_complexity Low_complexity 1 57 0 257 250 103 15 chrX 23707374 23707510 -153266630 + L1ME4a LINE L1 5974 6121 0 235 306 108 101 chrX 23707682 23708055 -153266085 + L2 LINE L2 2319 2688 -584 1106 220 155 19 chrX 23708055 23708352 -153265788 + LTR52 LTR ERVL 1 359 -62 423 0 0 0 chrX 23708352 23708399 -153265741 + (TG)n Simple_repeat Simple_repeat 1 47 0 1106 220 155 19 chrX 23708399 23708469 -153265671 + LTR52 LTR ERVL 359 418 -3 235 306 108 101 chrX 23708469 23709034 -153265106 + L2 LINE L2 2688 3272 0 1723 125 66 42 chrX 23709122 23709411 -153264729 - AluSx SINE Alu -16 296 1 214 200 0 0 chrX 23709988 23710028 -153264112 - L2 LINE L2 0 3313 3274 183 308 47 87 chrX 23710248 23710420 -153263720 + L3 LINE CR1 807 971 -606 237 299 14 89 chrX 23710489 23710703 -153263437 + L2 LINE L2 1203 1400 -1914 1104 289 18 6 chrX 23710793 23711132 -153263008 + LTR16C LTR ERVL 149 491 0 487 175 70 0 chrX 23711363 23711477 -153262663 - L1MC4 LINE L1 -1 8041 7920 1875 197 29 2 chrX 23711504 23711916 -153262224 - L1MB5 LINE L1 -9 6165 5743 1445 156 11 0 chrX 23711918 23712181 -153261959 - L1MA9 LINE L1 -186 6126 5861 1719 99 0 36 chrX 23712210 23712462 -153261678 + AluSx SINE Alu 54 296 -16 467 243 86 33 chrX 23712532 23712742 -153261398 - L1M4 LINE L1 -6300 242 22 5635 71 12 3 chrX 23712774 23713533 -153260607 + MER4E LTR ERV1 1 766 0 6086 111 91 25 chrX 23713533 23714545 -153259595 + MER4E-int LTR ERV1 1 1093 -5665 321 26 0 0 chrX 23714545 23714583 -153259557 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6086 111 91 25 chrX 23714583 23714665 -153259475 + MER4E-int LTR ERV1 1093 1168 -5590 7930 117 78 34 chrX 23714676 23716166 -153257974 + MER4E-int LTR ERV1 1444 2531 -4227 1968 125 7 3 chrX 23716166 23716455 -153257685 + AluSx SINE Alu 1 290 -22 7930 117 78 34 chrX 23716455 23717045 -153257095 + MER4E-int LTR ERV1 2531 3094 -3664 3740 150 63 7 chrX 23717043 23717658 -153256482 + MER4E-int LTR ERV1 3436 4085 -2673 * 1170 118 67 15 chrX 23717656 23717851 -153256289 + MER4E-int LTR ERV1 4448 4652 -2106 * 8304 217 72 56 chrX 23717852 23718202 -153255938 + L1MB1 LINE L1 806 1149 -5233 435 216 0 0 chrX 23718202 23718276 -153255864 + AluJ/FLAM SINE Alu 4 77 -235 8304 217 72 56 chrX 23718276 23718748 -153255392 + L1MB1 LINE L1 1149 1612 -4770 2252 112 0 0 chrX 23718748 23719052 -153255088 + AluSx SINE Alu 1 304 -8 8304 217 72 56 chrX 23719052 23719364 -153254776 + L1MB1 LINE L1 1612 1918 -4464 2510 84 0 0 chrX 23719364 23719674 -153254466 + AluSg SINE Alu 1 310 0 8304 217 72 56 chrX 23719674 23721725 -153252415 + L1MB1 LINE L1 1918 3936 -2446 2091 187 0 3 chrX 23721725 23722088 -153252052 - MLT1A1 LTR MaLR -3 362 1 8304 217 72 56 chrX 23722088 23722513 -153251627 + L1MB1 LINE L1 3936 4353 -2029 2183 105 3 13 chrX 23722513 23722826 -153251314 + AluSg SINE Alu 1 310 0 8304 217 72 56 chrX 23722826 23723120 -153251020 + L1MB1 LINE L1 4353 4801 -1581 593 194 36 61 chrX 23723120 23723285 -153250855 + MSTD LTR MaLR 1 161 -213 6099 34 1 1 chrX 23723295 23724023 -153250117 + L1PA5 LINE L1 5424 6151 -3 917 212 28 4 chrX 23724699 23724904 -153249236 + MSTD LTR MaLR 197 390 -6 5829 241 60 62 chrX 23724913 23725016 -153249124 + MSTD-int LTR MaLR 2 104 -1631 2226 44 44 4 chrX 23725016 23725333 -153248807 + AluY SINE Alu 1 328 0 5829 241 60 62 chrX 23725333 23726319 -153247821 + MSTD-int LTR MaLR 104 1090 -645 3294 159 19 3 chrX 23726319 23726890 -153247250 + LTR22 LTR ERVK 1 580 0 5829 241 60 62 chrX 23726890 23727535 -153246605 + MSTD-int LTR MaLR 1090 1735 0 839 210 111 72 chrX 23727535 23727869 -153246271 + MSTC LTR MaLR 1 383 -45 2220 119 0 0 chrX 23727869 23728171 -153245969 - AluSx SINE Alu -8 304 3 839 210 111 72 chrX 23728171 23728217 -153245923 + MSTC LTR MaLR 383 426 -2 4966 176 24 5 chrX 23728218 23729818 -153244322 + L1MB1 LINE L1 4774 6404 0 21 95 0 0 chrX 23730856 23730919 -153243221 + AT_rich Low_complexity Low_complexity 1 63 0 222 366 101 39 chrX 23731998 23732353 -153241787 + L2 LINE L2 1519 1895 -1419 479 344 60 51 chrX 23732354 23732706 -153241434 + MLT1K LTR MaLR 183 537 -51 353 295 119 81 chrX 23732709 23733031 -153241109 + L2 LINE L2 2077 2434 -880 402 190 36 73 chrX 23733031 23733168 -153240972 - MER94 DNA DNA -1 133 2 353 295 119 81 chrX 23733168 23733439 -153240701 + L2 LINE L2 2434 2693 -621 394 248 16 25 chrX 23733515 23733636 -153240504 + MLT1H LTR MaLR 40 159 -390 293 273 0 0 chrX 23733849 23733937 -153240203 + MLT1H LTR MaLR 462 549 0 604 336 74 44 chrX 23733942 23734439 -153239701 + L2 LINE L2 2396 2907 -407 266 262 115 107 chrX 23734433 23734685 -153239455 + L2 LINE L2 3019 3272 0 * 586 287 21 50 chrX 23736704 23736983 -153237157 - MLT1L LTR MaLR -123 492 222 1797 98 94 7 chrX 23737199 23737506 -153236634 + L1MA8 LINE L1 5679 6012 -279 287 137 0 0 chrX 23737516 23737567 -153236573 + L1MA9 LINE L1 6223 6273 -39 36 77 0 0 chrX 23737621 23737699 -153236441 + AT_rich Low_complexity Low_complexity 1 78 0 22 0 0 0 chrX 23737717 23737739 -153236401 + AT_rich Low_complexity Low_complexity 1 22 0 384 303 118 7 chrX 23738235 23738387 -153235753 - MIR SINE MIR -70 192 24 1972 107 66 38 chrX 23738484 23738849 -153235291 - THE1C LTR MaLR 0 375 1 531 252 8 0 chrX 23741167 23741290 -153232850 - LTR16C LTR ERVL -4 487 364 295 343 37 0 chrX 23742269 23742377 -153231763 - MIR SINE MIR -57 151 40 1611 201 30 54 chrX 23742389 23742818 -153231322 + MER31B LTR ERV1 48 466 0 261 130 22 0 chrX 23744336 23744382 -153229758 + MER5A DNA MER1_type 1 47 -142 401 297 145 65 chrX 23744384 23744660 -153229480 - LTR16C LTR ERVL -191 300 3 246 62 0 0 chrX 23745467 23745499 -153228641 + (TA)n Simple_repeat Simple_repeat 1 32 0 714 54 0 0 chrX 23745602 23745694 -153228446 - AluY SINE Alu -13 298 207 477 293 60 67 chrX 23745741 23745964 -153228176 + MER102b DNA MER1_type 27 249 -1179 2163 111 0 16 chrX 23745964 23746271 -153227869 + AluSx SINE Alu 1 302 -10 477 293 60 67 chrX 23746271 23746361 -153227779 + MER102b DNA MER1_type 249 338 -3 2356 89 6 10 chrX 23746811 23747124 -153227016 - AluSp SINE Alu -1 312 1 216 67 0 0 chrX 23747464 23747494 -153226646 + (GA)n Simple_repeat Simple_repeat 1 30 0 1998 213 45 19 chrX 23748381 23748845 -153225295 - MLT1E2 LTR MaLR 0 626 151 2149 97 7 27 chrX 23749035 23749335 -153224805 - AluSx SINE Alu -13 299 6 446 147 0 0 chrX 23749803 23749871 -153224269 + MLT1H1 LTR MaLR 1 68 -527 6962 217 90 23 chrX 23749871 23751166 -153222974 - L1M4 LINE L1 -3654 2990 1783 2267 110 3 0 chrX 23751166 23751474 -153222666 + AluSx SINE Alu 1 309 -3 6962 217 90 23 chrX 23751474 23752959 -153221181 - L1M4 LINE L1 -4861 1783 10 906 271 82 38 chrX 23752959 23753458 -153220682 + MLT1H1 LTR MaLR 43 553 -2 29 47 0 0 chrX 23753994 23754037 -153220103 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chrX 23754333 23754356 -153219784 + AT_rich Low_complexity Low_complexity 1 23 0 645 305 147 0 chrX 23754398 23754670 -153219470 - L2 LINE L2 0 3313 3002 833 264 111 11 chrX 23754998 23755278 -153218862 + MLT1H LTR MaLR 6 313 -236 1495 273 65 12 chrX 23755460 23755892 -153218248 - MLT1J LTR MaLR -49 462 8 798 250 66 9 chrX 23757530 23757742 -153216398 - MER58A DNA MER1_type 0 224 1 261 276 0 0 chrX 23757840 23757916 -153216224 + MER69 DNA AcHobo 2449 2524 -2 2033 109 7 18 chrX 23758295 23758606 -153215534 - AluSc SINE Alu 0 308 1 523 270 54 20 chrX 23759576 23759724 -153214416 - L2 LINE L2 -2 3311 3159 5442 131 32 44 chrX 23759729 23759906 -153214234 + L1MA4 LINE L1 5255 5433 -867 4064 88 2 15 chrX 23759906 23760490 -153213650 + L1PB1 LINE L1 5572 6151 0 5442 131 32 44 chrX 23760490 23761347 -153212793 + L1MA4 LINE L1 5433 6276 -24 243 233 188 15 chrX 23761378 23761511 -153212629 - L2 LINE L2 -131 3182 3027 569 304 69 10 chrX 23761665 23761869 -153212271 - MIR SINE MIR -22 240 25 213 154 0 0 chrX 23762516 23762555 -153211585 + (TA)n Simple_repeat Simple_repeat 2 40 0 215 279 49 0 chrX 23764439 23764500 -153209640 - MIR SINE MIR -148 114 51 708 261 53 0 chrX 23764804 23765011 -153209129 + MIR SINE MIR 1 218 -44 197 262 103 65 chrX 23765287 23765394 -153208746 - L2 LINE L2 -23 3290 3180 236 333 19 9 chrX 23767110 23767129 -153207011 + LTR67 LTR ERVL 95 112 -445 240 59 0 0 chrX 23767129 23767163 -153206977 + (CA)n Simple_repeat Simple_repeat 2 35 0 236 333 19 9 chrX 23767163 23767248 -153206892 + LTR67 LTR ERVL 112 200 -357 277 287 35 43 chrX 23767375 23767490 -153206650 + LTR67 LTR ERVL 359 472 -85 764 268 93 56 chrX 23767524 23768006 -153206134 - MLT1H LTR MaLR -28 521 22 228 291 47 0 chrX 23768016 23768102 -153206038 + LTR67 LTR ERVL 468 557 0 3424 141 110 10 chrX 23768701 23769410 -153204730 + L1MC3 LINE L1 6998 7777 -8 198 136 0 114 chrX 23770049 23770093 -153204047 + MIR SINE MIR 224 262 0 1863 194 48 19 chrX 23770302 23770776 -153203364 + Charlie4a DNA MER1_type 18 505 -3 716 278 67 28 chrX 23771670 23772030 -153202110 - L1ME2 LINE L1 -308 5856 5483 452 291 54 79 chrX 23772164 23772480 -153201660 - LTR16C LTR ERVL -26 465 158 204 219 170 24 chrX 23772653 23772734 -153201406 - MIR SINE MIR -85 123 44 854 262 44 82 chrX 23772870 23773282 -153200858 - MLT1J LTR MaLR -115 396 1 473 305 63 0 chrX 23773283 23773457 -153200683 + MIR SINE MIR 78 262 0 211 197 0 30 chrX 23774266 23774332 -153199808 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 36 0 0 chrX 23774482 23774510 -153199630 + AT_rich Low_complexity Low_complexity 1 28 0 2161 115 3 20 chrX 23774828 23775132 -153199008 + AluSx SINE Alu 1 299 -13 974 205 5 5 chrX 23775234 23775419 -153198721 + MER5A DNA MER1_type 4 188 -1 540 253 180 13 chrX 23775440 23775590 -153198550 + MER5A DNA MER1_type 9 183 -6 1978 166 43 8 chrX 23775618 23775991 -153198149 + MLT1B LTR MaLR 5 390 0 636 233 5 109 chrX 23775991 23776125 -153198015 - MER5B DNA MER1_type -5 173 63 2348 109 0 0 chrX 23776125 23776436 -153197704 + AluSq SINE Alu 1 311 -2 636 233 5 109 chrX 23776436 23776494 -153197646 - MER5B DNA MER1_type -115 63 1 1650 85 31 0 chrX 23776505 23776728 -153197412 + MER30 DNA MER1_type 1 230 0 253 283 11 43 chrX 23777619 23777711 -153196429 + LTR67 LTR ERVL 85 173 -384 * 254 310 15 36 chrX 23777652 23777877 -153196263 + MLT1J LTR MaLR 110 392 -223 1132 183 0 5 chrX 23777955 23778141 -153195999 - AluJo SINE Alu -2 310 126 234 146 0 0 chrX 23778148 23778189 -153195951 + MLT1L LTR MaLR 558 598 -17 35 0 0 0 chrX 23778189 23778224 -153195916 + AT_rich Low_complexity Low_complexity 1 35 0 181 374 81 45 chrX 23778439 23778637 -153195503 - L2 LINE L2 -48 3224 3020 189 74 0 0 chrX 23781920 23781947 -153192193 + (TG)n Simple_repeat Simple_repeat 1 27 0 345 317 21 111 chrX 23782011 23782345 -153191795 - L2 LINE L2 0 3272 2969 6581 25 0 2 chrX 23782389 23783195 -153190945 - L1PA4 LINE L1 -3 6152 5349 541 228 35 0 chrX 23783283 23783397 -153190743 - MLT1K LTR MaLR -331 257 140 195 42 0 0 chrX 23783407 23783431 -153190709 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chrX 23783655 23783676 -153190464 + AT_rich Low_complexity Low_complexity 1 21 0 625 242 5 53 chrX 23784175 23784365 -153189775 + L2 LINE L2 2182 2362 -952 935 116 7 0 chrX 23784372 23784519 -153189621 - L1MB7 LINE L1 -238 5946 5799 190 250 62 62 chrX 23784995 23785059 -153189081 - L2 LINE L2 -4 3309 3246 593 236 8 0 chrX 23785263 23785386 -153188754 + MLT1K LTR MaLR 140 263 -325 283 278 22 22 chrX 23785508 23785598 -153188542 + L2 LINE L2 2969 3058 -214 797 244 75 26 chrX 23785602 23785868 -153188272 + L2 LINE L2 3021 3299 -14 336 257 27 0 chrX 23785879 23785953 -153188187 - L2 LINE L2 -30 3283 3208 258 56 0 0 chrX 23785957 23785993 -153188147 + (TG)n Simple_repeat Simple_repeat 1 36 0 292 255 10 31 chrX 23786614 23786712 -153187428 + MIR SINE MIR 91 186 -76 753 160 19 51 chrX 23786728 23786884 -153187256 + FRAM SINE Alu 1 151 -25 22 35 0 0 chrX 23786888 23786917 -153187223 + AT_rich Low_complexity Low_complexity 1 29 0 619 304 103 18 chrX 23787158 23787382 -153186758 + MIR SINE MIR 20 262 0 270 212 0 15 chrX 23787521 23787587 -153186553 - LTR67 LTR ERVL 0 557 493 1945 142 35 41 chrX 23787750 23787989 -153186151 + MLT1A1 LTR MaLR 1 239 -126 2049 115 7 10 chrX 23787989 23788284 -153185856 - AluSq SINE Alu -19 294 1 1945 142 35 41 chrX 23788284 23788411 -153185729 + MLT1A1 LTR MaLR 239 365 0 889 251 20 85 chrX 23788559 23788602 -153185538 + L2 LINE L2 2806 2850 -463 2271 112 0 0 chrX 23788602 23788897 -153185243 - AluSg SINE Alu -15 295 1 889 251 20 85 chrX 23788897 23789210 -153184930 + L2 LINE L2 2850 3136 -177 1087 253 42 73 chrX 23789210 23789775 -153184365 - MLT1H LTR MaLR -1 548 1 889 251 20 85 chrX 23789775 23789819 -153184321 + L2 LINE L2 3136 3181 -132 633 167 28 7 chrX 23790546 23790690 -153183450 + GA-rich Low_complexity Low_complexity 2 148 0 557 279 29 0 chrX 23790725 23790865 -153183275 - MIR SINE MIR -72 190 47 2118 169 30 62 chrX 23790978 23791506 -153182634 - MLT2B1 LTR ERVL -7 513 3 1774 211 77 43 chrX 23791662 23792245 -153181895 + L1ME3 LINE L1 5518 6120 -42 338 143 69 12 chrX 23792258 23792592 -153181548 + (TA)n Simple_repeat Simple_repeat 1 353 0 202 82 47 47 chrX 23792615 23792700 -153181440 + (TA)n Simple_repeat Simple_repeat 2 86 0 208 111 41 76 chrX 23792721 23792893 -153181247 + (TA)n Simple_repeat Simple_repeat 1 166 0 379 136 26 84 chrX 23792911 23793238 -153180902 + (TA)n Simple_repeat Simple_repeat 1 308 0 608 201 11 4 chrX 23793251 23793533 -153180607 + (TA)n Simple_repeat Simple_repeat 1 284 0 324 204 11 43 chrX 23793534 23793627 -153180513 - L1MC4 LINE L1 -1338 6704 6615 35 0 0 0 chrX 23793723 23793758 -153180382 + AT_rich Low_complexity Low_complexity 1 35 0 183 80 0 0 chrX 23794408 23794433 -153179707 + (CA)n Simple_repeat Simple_repeat 1 25 0 3608 155 99 36 chrX 23794452 23795081 -153179059 - L1MB8 LINE L1 -9 6169 5475 738 186 16 0 chrX 23795081 23795210 -153178930 - FLAM_C SINE Alu -2 131 1 3608 155 99 36 chrX 23795210 23795395 -153178745 - L1MB8 LINE L1 -703 5475 5303 5068 77 3 1 chrX 23795511 23796170 -153177970 - PABL_A LTR ERV1 0 660 1 1412 53 0 0 chrX 23797151 23797320 -153176820 - AluY SINE Alu -12 299 131 2492 66 0 0 chrX 23797321 23797624 -153176516 - AluY SINE Alu -8 303 1 439 221 0 0 chrX 23797886 23797981 -153176159 + MER41C-int LTR ERV1 422 516 -7240 18683 148 53 23 chrX 23798085 23801620 -153172520 + MER41C-int LTR ERV1 381 4020 -1926 4392 103 81 43 chrX 23801627 23802445 -153171695 + MER41C-int LTR ERV1 4638 5486 -460 927 110 7 21 chrX 23802440 23802585 -153171555 + MER41C-int LTR ERV1 5728 5870 -76 * 715 175 164 23 chrX 23802462 23802633 -153171507 + HERVK14 LTR ERVK 5565 5759 -186 * 2713 162 14 73 chrX 23802634 23803100 -153171040 + MER41C LTR ERV1 2 427 -127 2292 97 7 7 chrX 23803100 23803410 -153170730 - AluSx SINE Alu -2 310 1 2713 162 14 73 chrX 23803410 23803531 -153170609 + MER41C LTR ERV1 427 554 0 23 0 0 0 chrX 23804408 23804431 -153169709 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chrX 23805345 23805375 -153168765 + AT_rich Low_complexity Low_complexity 1 30 0 568 248 65 0 chrX 23805660 23805813 -153168327 + MLT1J LTR MaLR 10 172 -339 1472 192 86 28 chrX 23805819 23806030 -153168110 + MER63B DNA MER1_type 1 198 -864 14635 124 34 22 chrX 23806030 23808418 -153165722 - Tigger1 DNA MER2_type 0 2418 1 1472 192 86 28 chrX 23808418 23808602 -153165538 + MER63B DNA MER1_type 198 419 -17 216 200 0 0 chrX 23808801 23808846 -153165294 + T-rich Low_complexity Low_complexity 2 46 0 510 129 0 0 chrX 23808846 23808931 -153165209 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 774 288 57 50 chrX 23808931 23809334 -153164806 + MLT1J LTR MaLR 32 437 -74 1036 97 0 0 chrX 23809337 23809471 -153164669 + AluY SINE Alu 1 134 -177 2375 67 0 3 chrX 23809471 23809771 -153164369 + AluY SINE Alu 1 299 -12 4128 228 23 34 chrX 23810100 23811419 -153162721 - L1MCb LINE L1 -4850 1195 1 2186 114 3 16 chrX 23811530 23811847 -153162293 + AluSq SINE Alu 1 313 0 1265 261 99 21 chrX 23813711 23814144 -153159996 + MLT1H LTR MaLR 81 547 -2 2162 100 0 45 chrX 23815094 23815264 -153158876 - AluSg SINE Alu -9 301 125 5335 24 7 0 chrX 23815264 23815884 -153158256 - L1PA5 LINE L1 -2 6152 5529 899 47 0 0 chrX 23815884 23815991 -153158149 - U6 snRNA snRNA 0 107 1 2162 100 0 45 chrX 23815991 23816130 -153158010 - AluSg SINE Alu -183 127 5 390 355 112 25 chrX 23816473 23816989 -153157151 + L2 LINE L2 1441 2001 -1313 447 163 38 123 chrX 23816995 23817153 -153156987 - MLT1H LTR MaLR -3 548 408 258 105 0 0 chrX 23817410 23817448 -153156692 + (TG)n Simple_repeat Simple_repeat 1 38 0 185 319 234 7 chrX 23817488 23817629 -153156511 + L2 LINE L2 2078 2250 -1064 188 349 82 14 chrX 23817635 23817781 -153156359 + L2 LINE L2 2866 3021 -251 204 299 52 0 chrX 23817794 23817871 -153156269 + L2 LINE L2 3183 3263 -9 1219 134 90 80 chrX 23818233 23818654 -153155486 + THE1C LTR MaLR 1 428 0 9343 108 60 14 chrX 23818654 23820159 -153153981 + THE1C-int LTR MaLR 1 1574 -6 2098 129 52 19 chrX 23820164 23820527 -153153613 + THE1C LTR MaLR 1 375 0 21 0 0 0 chrX 23820918 23820939 -153153201 + AT_rich Low_complexity Low_complexity 1 21 0 1972 130 18 7 chrX 23820941 23821225 -153152915 - AluSx SINE Alu -21 291 5 320 326 96 48 chrX 23821300 23821487 -153152653 - L2 LINE L2 0 3272 3077 2104 141 3 0 chrX 23823870 23824174 -153149966 + AluSx SINE Alu 3 307 -5 1015 309 126 2 chrX 23824193 23824639 -153149501 + L2 LINE L2 851 1351 -1963 271 388 33 0 chrX 23824674 23824826 -153149314 + L2 LINE L2 2988 3144 -169 305 191 19 19 chrX 23824839 23824890 -153149250 + (TA)n Simple_repeat Simple_repeat 1 51 -54 2369 138 26 54 chrX 23824890 23825390 -153148750 - LTR19A LTR ERV1 0 486 1 305 191 19 19 chrX 23825390 23825443 -153148697 + (TA)n Simple_repeat Simple_repeat 50 105 0 211 277 36 71 chrX 23825452 23825564 -153148576 + L2 LINE L2 3141 3248 -65 870 178 50 0 chrX 23825569 23825749 -153148391 - MER20 DNA MER1_type 0 219 31 186 43 0 0 chrX 23825842 23825865 -153148275 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 485 220 11 77 chrX 23826013 23826195 -153147945 + MER5B DNA MER1_type 5 174 -4 584 291 109 30 chrX 23827004 23828154 -153145986 - L1M4 LINE L1 -3446 2683 1478 1062 128 0 0 chrX 23828174 23828338 -153145802 + L1 LINE L1 4086 4249 -1897 * 3032 239 59 15 chrX 23828336 23829376 -153144764 + MSTA-int LTR MaLR 546 1735 0 2025 144 72 55 chrX 23829376 23829754 -153144386 + MSTA LTR MaLR 1 388 -40 2438 87 3 3 chrX 23829754 23830063 -153144077 - AluSp SINE Alu 0 313 5 2025 144 72 55 chrX 23830063 23830101 -153144039 + MSTA LTR MaLR 388 424 -4 620 197 0 7 chrX 23830104 23830246 -153143894 + L1MA5 LINE L1 6157 6297 -3 451 286 60 46 chrX 23830246 23830463 -153143677 - L1M4 LINE L1 -4843 1467 1248 614 274 111 5 chrX 23830463 23830653 -153143487 + LTR33 LTR ERVL 1 210 -311 424 216 116 66 chrX 23830739 23830920 -153143220 + LTR33 LTR ERVL 332 521 0 1281 206 26 18 chrX 23830942 23831352 -153142788 + MLT2D LTR ERVL 1 414 -50 317 233 47 23 chrX 23831498 23831584 -153142556 + L1M LINE L1 5299 5386 -2422 31 0 0 0 chrX 23831955 23831986 -153142154 + AT_rich Low_complexity Low_complexity 1 31 0 379 287 48 59 chrX 23832421 23832662 -153141478 - L1M4 LINE L1 -4870 1249 1007 2217 103 0 3 chrX 23832662 23832953 -153141187 - AluY SINE Alu -17 294 5 379 287 48 59 chrX 23832953 23833428 -153140712 - L1M4 LINE L1 -5112 1007 540 26 64 0 0 chrX 23834073 23834120 -153140020 + AT_rich Low_complexity Low_complexity 1 47 0 234 303 26 0 chrX 23834347 23834423 -153139717 + MLT1L LTR MaLR 205 282 -333 385 275 67 34 chrX 23834534 23834639 -153139501 + MLT1L LTR MaLR 412 527 -88 2632 106 35 30 chrX 23834639 23835065 -153139075 - MSTA LTR MaLR 0 428 1 385 275 67 34 chrX 23835065 23835137 -153139003 + MLT1L LTR MaLR 527 595 -20 2297 241 54 2 chrX 23835167 23835719 -153138421 + MLT1G LTR MaLR 10 590 0 374 231 209 8 chrX 23836098 23836232 -153137908 + MIR3 SINE MIR 33 193 -15 1130 174 75 72 chrX 23836254 23836617 -153137523 + MLT1D LTR MaLR 1 424 -81 3769 100 9 104 chrX 23836617 23836702 -153137438 + MER51A LTR ERV1 1 93 -541 2381 69 3 41 chrX 23836702 23837019 -153137121 + AluSp SINE Alu 1 305 -8 3769 100 9 104 chrX 23837019 23837634 -153136506 + MER51A LTR ERV1 93 634 0 1130 174 75 72 chrX 23837634 23837717 -153136423 + MLT1D LTR MaLR 424 505 0 564 303 42 0 chrX 23837717 23837882 -153136258 + MIR SINE MIR 14 185 -77 42 71 0 0 chrX 23837914 23837998 -153136142 + AT_rich Low_complexity Low_complexity 1 84 0 294 234 126 18 chrX 23838054 23838165 -153135975 - MIR SINE MIR -70 192 70 281 209 124 124 chrX 23839464 23839593 -153134547 + MER5B DNA MER1_type 1 129 -49 2178 108 0 0 chrX 23839893 23840211 -153133929 - AluSx SINE Alu 0 318 1 219 228 13 38 chrX 23840424 23840503 -153133637 + (TATATG)n Simple_repeat Simple_repeat 3 79 0 337 291 63 25 chrX 23840877 23841035 -153133105 + HAL1b LINE L1 739 902 -446 620 257 127 30 chrX 23841510 23841848 -153132292 + HAL1 LINE L1 2128 2498 -9 294 246 14 14 chrX 23842538 23842607 -153131533 - L2 LINE L2 -9 3263 3195 289 377 22 22 chrX 23842783 23842921 -153131219 - MIR3 SINE MIR -61 147 10 740 310 29 4 chrX 23843273 23843515 -153130625 - MIR SINE MIR 0 262 15 195 0 56 28 chrX 23844867 23844903 -153129237 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 585 129 0 0 chrX 23845283 23845376 -153128764 + (TG)n Simple_repeat Simple_repeat 2 94 0 195 232 14 116 chrX 23846230 23846299 -153127841 - L2 LINE L2 0 3272 3211 21 0 0 0 chrX 23847229 23847250 -153126890 + AT_rich Low_complexity Low_complexity 1 21 0 2127 122 20 7 chrX 23847342 23847645 -153126495 + AluSx SINE Alu 2 308 -4 2221 121 3 0 chrX 23848261 23848566 -153125574 + AluSx SINE Alu 1 306 -6 2267 115 0 3 chrX 23848715 23849019 -153125121 - AluSx SINE Alu -9 303 1 2338 144 8 0 chrX 23849547 23849909 -153124231 - MLT1A1 LTR MaLR 0 365 1 794 192 176 0 chrX 23850216 23850398 -153123742 - MER58A DNA MER1_type -9 215 2 2257 189 48 67 chrX 23851382 23851600 -153122540 + L1MD2 LINE L1 5682 5903 -456 1694 168 7 23 chrX 23851600 23851903 -153122237 + AluJb SINE Alu 1 298 -14 2257 189 48 67 chrX 23851903 23852372 -153121768 + L1MD2 LINE L1 5903 6356 -3 3635 139 48 8 chrX 23902419 23903131 -153071009 + Tigger3(Golem) DNA MER2_type 2290 3029 0 758 249 47 26 chrX 23903173 23903366 -153070774 - MIR SINE MIR -59 203 7 989 250 88 70 chrX 23904005 23904505 -153069635 + LTR33A LTR ERVL 1 509 -14 41942 44 0 1 chrX 23906291 23912441 -153061699 - L1PA4 LINE L1 -4 6151 2 219 320 67 0 chrX 23912447 23912522 -153061618 - MIR SINE MIR -62 146 67 22 0 0 0 chrX 23912551 23912573 -153061567 + AT_rich Low_complexity Low_complexity 1 22 0 468 275 133 88 chrX 23912843 23913250 -153060890 + MLT1K LTR MaLR 78 502 -86 937 222 23 28 chrX 23913257 23913473 -153060667 - LTR16A LTR ERVL -6 444 230 308 277 107 0 chrX 23914038 23914150 -153059990 - MIR SINE MIR 0 262 139 961 189 6 11 chrX 23914150 23914330 -153059810 + MLT1D LTR MaLR 1 179 -326 1113 121 0 0 chrX 23914330 23914487 -153059653 + AluSp/q SINE Alu 157 313 0 463 229 57 14 chrX 23914512 23914652 -153059488 + L1MC4 LINE L1 7896 8041 -1 1955 154 13 10 chrX 23916042 23916162 -153057978 + AluJo SINE Alu 1 119 -193 198 0 0 0 chrX 23916162 23916184 -153057956 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1955 154 13 10 chrX 23916184 23916374 -153057766 + AluJo SINE Alu 119 312 0 26 0 0 0 chrX 23916822 23916848 -153057292 + AT_rich Low_complexity Low_complexity 1 26 0 580 176 84 8 chrX 23916893 23917012 -153057128 + MLT1B LTR MaLR 20 147 -243 385 152 0 0 chrX 23917016 23917082 -153057058 + MLT1B LTR MaLR 323 388 -2 901 307 68 70 chrX 23917090 23917814 -153056326 + L1M4 LINE L1 19 740 -5802 241 200 60 0 chrX 23918828 23918878 -153055262 - LTR67 LTR ERVL 0 557 505 583 189 0 0 chrX 23919538 23919644 -153054496 + MER63 DNA MER1_type 11 742 -94 555 275 78 67 chrX 23920112 23920396 -153053744 - MLT1H LTR MaLR -16 533 247 1989 154 0 0 chrX 23920472 23920770 -153053370 - AluSx SINE Alu 0 312 15 310 128 0 0 chrX 23920788 23920835 -153053305 - MLT1I LTR MaLR -265 144 98 376 353 0 25 chrX 23920926 23921048 -153053092 - L2 LINE L2 -48 3224 3106 372 345 86 46 chrX 23922197 23922314 -153051826 - L2 LINE L2 -196 3076 2965 2162 179 63 16 chrX 23922314 23922760 -153051380 + MLT1C LTR MaLR 1 467 0 372 345 86 46 chrX 23922760 23923069 -153051071 - L2 LINE L2 -307 2965 2621 277 169 34 0 chrX 23923076 23923135 -153051005 - MLT1H LTR MaLR 0 549 489 567 344 46 43 chrX 23923230 23923556 -153050584 - MLT1H LTR MaLR -216 333 7 1367 203 40 58 chrX 23924225 23924622 -153049518 + MLT1B LTR MaLR 1 396 0 959 330 139 46 chrX 23924852 23926914 -153047226 - L2 LINE L2 -823 2491 239 525 289 56 15 chrX 23927200 23927397 -153046743 + MIR SINE MIR 52 256 -6 524 304 22 78 chrX 23927396 23927626 -153046514 - L3 LINE CR1 -459 1118 902 * 1967 161 20 55 chrX 23927722 23928126 -153046014 - MLT1B LTR MaLR 0 390 1 540 95 30 0 chrX 23928141 23928243 -153045897 - L1MA4 LINE L1 -412 5885 5777 3413 109 12 32 chrX 23928878 23928929 -153045211 + L1MA4 LINE L1 5291 5342 -958 3039 113 7 0 chrX 23928929 23929354 -153044786 + MSTA LTR MaLR 1 428 0 3413 109 12 32 chrX 23929354 23929888 -153044252 + L1MA4 LINE L1 5342 5864 -436 1023 268 98 45 chrX 23929981 23930452 -153043688 - L1ME3A LINE L1 -138 5966 5471 296 304 0 36 chrX 23930468 23930606 -153043534 - L1ME3A LINE L1 -2540 3540 3408 358 330 73 0 chrX 23930646 23930864 -153043276 - L1ME3A LINE L1 -3302 2778 2545 298 294 11 0 chrX 23931017 23931109 -153043031 - L1ME3A LINE L1 -5975 95 3 915 122 0 8 chrX 23931493 23931624 -153042516 + AluSg/x SINE Alu 169 298 -12 567 308 75 13 chrX 23931743 23931818 -153042322 - HAL1 LINE L1 -958 1549 1480 180 77 0 0 chrX 23931818 23931844 -153042296 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 567 308 75 13 chrX 23931844 23932076 -153042064 - HAL1 LINE L1 -1027 1480 1223 3856 88 5 27 chrX 23932257 23932765 -153041375 - L1P LINE L1 -2565 3581 3086 2289 91 16 0 chrX 23932765 23933073 -153041067 - AluSp SINE Alu 0 313 1 3856 88 5 27 chrX 23933073 23933157 -153040983 - L1P LINE L1 -3060 3086 3002 2050 108 6 54 chrX 23933224 23933538 -153040602 - AluSx SINE Alu -13 299 1 640 288 12 21 chrX 23933539 23933782 -153040358 + MER112 DNA MER1_type 6 246 -14 355 296 128 35 chrX 23934585 23934811 -153039329 + MIR SINE MIR 16 262 0 11004 123 23 12 chrX 23935556 23937314 -153036826 + Tigger1 DNA MER2_type 1 1777 -641 3268 115 18 37 chrX 23937321 23937868 -153036272 - L1MA3 LINE L1 0 7724 7188 1148 128 21 0 chrX 23937873 23938060 -153036080 + Tigger1 DNA MER2_type 1114 1304 -1114 15771 168 16 13 chrX 23938060 23938173 -153035967 - L1MA3 LINE L1 -733 6991 6880 2529 51 0 0 chrX 23938173 23938469 -153035671 + AluY SINE Alu 1 296 -15 15771 168 16 13 chrX 23938469 23941933 -153032207 - L1MA3 LINE L1 -844 6880 3398 606 186 26 64 chrX 23943044 23943200 -153030940 - MER5B DNA MER1_type -27 151 2 2185 112 0 13 chrX 23943216 23943530 -153030610 + AluSx SINE Alu 1 310 -2 1385 174 45 7 chrX 23943762 23944050 -153030090 - MER33 DNA MER1_type -23 301 3 536 288 102 13 chrX 23944545 23944781 -153029359 + MLT1L LTR MaLR 349 605 -10 597 14 0 0 chrX 23946140 23946210 -153027930 + (TG)n Simple_repeat Simple_repeat 2 71 0 1097 240 51 14 chrX 23946811 23947163 -153026977 + L1MC4 LINE L1 7692 8041 -1 6622 127 21 16 chrX 23947241 23948388 -153025752 + L1MA10 LINE L1 5155 6327 -7 285 283 97 9 chrX 23949524 23949637 -153024503 - MIR SINE MIR -38 224 102 23 33 0 0 chrX 23949966 23949996 -153024144 + AT_rich Low_complexity Low_complexity 1 30 0 1016 307 50 37 chrX 23953471 23953956 -153020184 + LTR16C LTR ERVL 1 491 0 223 200 22 0 chrX 23954643 23954688 -153019452 + MIR SINE MIR 106 151 -111 5490 124 2 34 chrX 23954745 23955640 -153018500 - L1MC1 LINE L1 -2 6331 5465 2461 131 91 11 chrX 23955640 23956082 -153018058 - L1MA9 LINE L1 -43 6269 5793 2263 187 60 17 chrX 23956077 23956759 -153017381 - L1MC1 LINE L1 -743 5403 4745 * 277 360 63 18 chrX 23958547 23958769 -153015371 + L2 LINE L2 1488 1719 -1595 275 231 66 11 chrX 23958779 23958870 -153015270 + L1MC5 LINE L1 7835 7930 -31 3791 186 32 8 chrX 23958871 23959642 -153014498 - L1MB8 LINE L1 -38 6140 5351 4244 115 54 34 chrX 23959774 23960529 -153013611 + L1PB4 LINE L1 5387 6156 0 545 276 127 48 chrX 23961173 23962130 -153012010 + L1ME3A LINE L1 1281 2529 -4593 * 2549 242 75 30 chrX 23962127 23962974 -153011166 + L1ME3A LINE L1 6101 6954 -11 1013 235 38 4 chrX 23963551 23963789 -153010351 - MIR SINE MIR -15 247 2 195 69 0 0 chrX 23964231 23964260 -153009880 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 312 218 0 26 chrX 23965467 23965545 -153008595 + MER58B DNA MER1_type 263 338 -3 357 339 67 18 chrX 23965545 23965710 -153008430 + L1ME3A LINE L1 5790 5962 -208 392 255 0 6 chrX 23965893 23966050 -153008090 + (TA)n Simple_repeat Simple_repeat 1 156 0 340 147 53 0 chrX 23966096 23966171 -153007969 + MLT1H LTR MaLR 471 549 0 545 286 54 15 chrX 23966730 23966933 -153007207 + L3 LINE CR1 1366 1576 -1 252 263 9 70 chrX 23967030 23967144 -153006996 + MLT1L LTR MaLR 1 107 -508 227 250 17 0 chrX 23967357 23967417 -153006723 + MLT1L LTR MaLR 168 228 -387 584 287 100 14 chrX 23967540 23968006 -153006134 + MLT1G1 LTR MaLR 1 592 -3 549 306 95 0 chrX 23968012 23968234 -153005906 + MLT1L LTR MaLR 372 614 -1 232 279 108 9 chrX 23968421 23968532 -153005608 - L1ME4a LINE L1 -31 6090 5969 732 315 26 13 chrX 23969333 23969635 -153004505 - LTR16C LTR ERVL -27 464 159 22 0 0 0 chrX 23970385 23970407 -153003733 + AT_rich Low_complexity Low_complexity 1 22 0 1098 68 0 8 chrX 23970407 23970540 -153003600 - AluSq/x SINE Alu -181 132 1 350 170 123 53 chrX 23971416 23971587 -153002553 + MER31-int LTR ERV1 1289 1471 -3465 28 48 0 0 chrX 23971628 23971670 -153002470 + AT_rich Low_complexity Low_complexity 1 42 0 347 223 39 31 chrX 23971794 23971924 -153002216 + MER31-int LTR ERV1 1785 1915 -3021 1693 189 62 75 chrX 23972482 23972812 -153001328 - MLT1D LTR MaLR -3 502 169 7055 56 10 11 chrX 23972812 23974416 -152999724 + SVA Other Other 11 1381 -5 180 0 0 0 chrX 23974419 23974439 -152999701 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1693 189 62 75 chrX 23974439 23974605 -152999535 - MLT1D LTR MaLR -338 167 6 275 229 57 132 chrX 23974752 23975032 -152999108 + MER31-int LTR ERV1 2650 2908 -2028 1365 159 9 4 chrX 23975087 23975313 -152998827 + AluJo SINE Alu 86 312 0 2467 53 0 31 chrX 23975572 23975890 -152998250 - AluY SINE Alu -3 308 1 2286 95 3 0 chrX 23976206 23976500 -152997640 - AluSq SINE Alu -18 295 1 1631 189 3 20 chrX 23976505 23976802 -152997338 - AluJo SINE Alu -20 292 1 267 334 17 14 chrX 23977323 23977450 -152996690 + MIR SINE MIR 20 146 -62 300 227 40 0 chrX 23977950 23978025 -152996115 + MER5C DNA MER1_type 45 122 -202 189 167 0 0 chrX 23978190 23978226 -152995914 + MER5C DNA MER1_type 289 324 0 315 267 108 108 chrX 23978297 23978548 -152995592 - MER102a DNA MER1_type -3 327 77 327 277 40 10 chrX 23979427 23979528 -152994612 - MIR SINE MIR -119 143 40 700 223 145 42 chrX 23981360 23981692 -152992448 + LTR37A LTR ERV1 8 373 -53 577 357 109 6 chrX 23981749 23982088 -152992052 + L2 LINE L2 2412 2785 -529 351 334 60 108 chrX 23982085 23982417 -152991723 + L2 LINE L2 2957 3272 0 * 234 0 0 0 chrX 23982484 23982510 -152991630 + (T)n Simple_repeat Simple_repeat 1 26 0 1437 156 0 0 chrX 23982521 23982733 -152991407 - AluJo SINE Alu -100 212 1 248 255 170 9 chrX 23982733 23982839 -152991301 + MIR SINE MIR 121 243 -19 1308 181 8 4 chrX 23983138 23983397 -152990743 + L1MB7 LINE L1 5910 6169 -15 342 238 12 151 chrX 23983745 23983917 -152990223 + MER5A DNA MER1_type 6 164 -25 1121 216 23 0 chrX 23984739 23984957 -152989183 - MER58A DNA MER1_type 0 224 2 1042 273 109 40 chrX 23985852 23986375 -152987765 + MLT1G1 LTR MaLR 3 561 -34 244 301 71 35 chrX 23987085 23987198 -152986942 + MIR SINE MIR 67 183 -79 333 234 169 45 chrX 23987522 23987547 -152986593 + L1MC5 LINE L1 7752 7773 -188 429 20 0 0 chrX 23987547 23987597 -152986543 + (CA)n Simple_repeat Simple_repeat 2 51 0 333 234 169 45 chrX 23987597 23987725 -152986415 + L1MC5 LINE L1 7773 7924 -37 21 36 0 0 chrX 23987946 23987974 -152986166 + AT_rich Low_complexity Low_complexity 1 28 0 2067 112 54 0 chrX 23988373 23988667 -152985473 + AluSx SINE Alu 1 310 -2 24 53 0 0 chrX 23988815 23988853 -152985287 + AT_rich Low_complexity Low_complexity 1 38 0 307 299 0 8 chrX 23988921 23989038 -152985102 + L1ME LINE L1 5701 5816 -305 1029 214 15 0 chrX 23989075 23989276 -152984864 - AluJo SINE Alu -22 290 87 430 244 58 12 chrX 23989419 23989583 -152984557 - MER63 DNA MER1_type 0 1060 38 845 244 27 23 chrX 23990274 23990495 -152983645 - MER58A DNA MER1_type 0 224 3 322 269 37 45 chrX 23990769 23990903 -152983237 + MIR SINE MIR 80 212 -50 22 56 0 0 chrX 23990938 23990974 -152983166 + AT_rich Low_complexity Low_complexity 1 36 0 264 237 0 0 chrX 23992189 23992248 -152981892 - L1ME4a LINE L1 -85 6036 5978 359 236 99 19 chrX 23992506 23992638 -152981502 + MIR SINE MIR 113 256 -6 2551 57 0 19 chrX 23992708 23993046 -152981094 + AluY SINE Alu 1 332 0 670 147 0 0 chrX 23993414 23993516 -152980624 + AluJ/FLAM SINE Alu 1 102 -210 1640 138 0 71 chrX 23993518 23993801 -152980339 + AluJo SINE Alu 33 295 -17 384 22 0 0 chrX 23993834 23993879 -152980261 + (TG)n Simple_repeat Simple_repeat 2 46 0 294 29 0 0 chrX 23993880 23993915 -152980225 + (GA)n Simple_repeat Simple_repeat 2 36 0 272 109 164 18 chrX 23994373 23994428 -152979712 + MIR SINE MIR 176 238 -24 214 241 74 0 chrX 23994395 23994449 -152979691 + L2 LINE L2 3251 3308 -5 * 314 231 0 0 chrX 23994575 23994653 -152979487 - MER116 DNA Mariner -2 78 1 180 0 0 0 chrX 23995316 23995336 -152978804 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 298 287 119 10 chrX 23996107 23996208 -152977932 + MIR3 SINE MIR 88 199 -9 25 31 0 0 chrX 23997613 23997645 -152976495 + AT_rich Low_complexity Low_complexity 1 32 0 2464 11 0 0 chrX 23998710 23998982 -152975158 + AluYa5 SINE Alu 39 310 -1 320 202 65 40 chrX 23999380 23999504 -152974636 + MER103 DNA DNA 37 163 -3 1311 164 45 11 chrX 23999659 23999946 -152974194 + MER33 DNA MER1_type 6 302 -22 207 69 0 0 chrX 24000217 24000246 -152973894 + (CA)n Simple_repeat Simple_repeat 2 30 0 220 193 175 0 chrX 24003177 24003232 -152970908 + L2 LINE L2 3193 3257 -56 293 307 59 10 chrX 24003232 24003333 -152970807 + MIR SINE MIR 3 108 -154 212 235 0 0 chrX 24003724 24003775 -152970365 + (CA)n Simple_repeat Simple_repeat 1 51 0 281 26 26 0 chrX 24003897 24003935 -152970205 + (CA)n Simple_repeat Simple_repeat 2 40 0 1106 238 41 3 chrX 24006546 24006887 -152967253 - Charlie4a DNA MER1_type -64 444 91 584 291 123 30 chrX 24007724 24008057 -152966083 + L1MB5 LINE L1 3122 3485 -2661 2484 168 97 9 chrX 24008170 24008694 -152965446 + MER101B LTR ERV1 1 570 0 441 200 39 23 chrX 24008829 24008959 -152965181 + L1PB4 LINE L1 6024 6155 -1 933 287 36 8 chrX 24009302 24009664 -152964476 - L2 LINE L2 -243 3070 2700 232 317 36 36 chrX 24009722 24009943 -152964197 + L1MB5 LINE L1 4056 4276 -1870 681 270 33 7 chrX 24010082 24010386 -152963754 + L1MB5 LINE L1 4337 4648 -1498 357 338 133 18 chrX 24010531 24010922 -152963218 + L1MB5 LINE L1 4943 5378 -768 1251 165 85 31 chrX 24011182 24011315 -152962825 + AluJo SINE Alu 9 133 -172 2652 109 48 10 chrX 24011315 24011727 -152962413 - MSTA LTR MaLR 0 428 1 1251 165 85 31 chrX 24011727 24011876 -152962264 + AluJo SINE Alu 133 305 0 208 255 0 0 chrX 24011940 24011987 -152962153 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 560 253 16 55 chrX 24012024 24012206 -152961934 - MIR SINE MIR 0 262 88 304 125 0 25 chrX 24012736 24012816 -152961324 + (TA)n Simple_repeat Simple_repeat 1 78 0 565 221 16 0 chrX 24012818 24012945 -152961195 + L1MB5 LINE L1 5620 5748 -2060 2253 154 65 0 chrX 24012980 24013383 -152960757 + MSTB1 LTR MaLR 4 432 0 21 57 0 0 chrX 24013528 24013563 -152960577 + AT_rich Low_complexity Low_complexity 1 35 0 281 187 421 0 chrX 24013875 24013982 -152960158 - MER5A DNA MER1_type -29 160 9 1409 147 51 61 chrX 24014610 24014985 -152959155 + LTR37A LTR ERV1 56 426 0 236 75 0 25 chrX 24015143 24015183 -152958957 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 755 211 46 40 chrX 24015225 24015400 -152958740 + MER45A DNA AcHobo 1 176 -2 221 359 83 39 chrX 24015565 24015746 -152958394 - L2 LINE L2 -171 3101 2913 2880 135 23 2 chrX 24016036 24016517 -152957623 + L1PA15 LINE L1 5675 6165 0 236 146 0 0 chrX 24016521 24016569 -152957571 + L1MB5 LINE L1 6127 6174 0 225 286 0 0 chrX 24016644 24016693 -152957447 - L2 LINE L2 -17 3296 3248 624 259 137 29 chrX 24016887 24017231 -152956909 + LTR16A1 LTR ERVL 1 381 -76 572 357 130 33 chrX 24017358 24017953 -152956187 + L2 LINE L2 2606 3262 -10 21 0 0 0 chrX 24018237 24018258 -152955882 + AT_rich Low_complexity Low_complexity 1 21 0 361 330 0 27 chrX 24019032 24019144 -152954996 - MIR SINE MIR -63 145 37 200 345 0 52 chrX 24020021 24020137 -152954003 + L3b LINE CR1 1262 1371 -212 21 57 0 0 chrX 24020508 24020543 -152953597 + AT_rich Low_complexity Low_complexity 1 35 0 544 252 168 7 chrX 24020724 24020879 -152953261 - MER5A DNA MER1_type 0 189 10 997 162 88 28 chrX 24020899 24021183 -152952957 + MER33 DNA MER1_type 23 323 -1 1116 190 9 9 chrX 24021768 24021979 -152952161 + MER58A DNA MER1_type 10 220 -4 457 283 25 0 chrX 24022100 24022220 -152951920 - L2 LINE L2 -1 3312 3190 237 335 116 43 chrX 24022227 24022391 -152951749 - L2 LINE L2 0 3272 3097 1310 215 78 43 chrX 24022418 24022842 -152951298 + MLT2B1 LTR ERVL 1 414 0 1479 161 7 65 chrX 24023434 24023713 -152950427 + AluJo SINE Alu 40 302 -10 1877 245 53 6 chrX 24023735 24024204 -152949936 + LTR16C LTR ERVL 1 491 0 191 279 100 86 chrX 24024513 24024653 -152949487 - L2 LINE L2 -216 3056 2915 296 297 55 33 chrX 24026241 24026332 -152947808 + L2 LINE L2 3137 3229 -43 211 231 39 0 chrX 24026398 24026450 -152947690 + CT-rich Low_complexity Low_complexity 2 55 0 447 276 0 29 chrX 24026452 24026557 -152947583 - L2 LINE L2 -10 3303 3202 214 360 36 36 chrX 24026895 24027034 -152947106 - L2 LINE L2 0 3272 3134 234 128 0 0 chrX 24027761 24027800 -152946340 + (TG)n Simple_repeat Simple_repeat 2 40 0 2054 52 0 0 chrX 24029216 24029467 -152944673 + L1PA5 LINE L1 5899 6149 -5 26 0 0 0 chrX 24029718 24029744 -152944396 + AT_rich Low_complexity Low_complexity 1 26 0 4658 57 16 0 chrX 24029753 24030334 -152943806 + L1PA5 LINE L1 5564 6153 -1 336 160 21 96 chrX 24030717 24030751 -152943389 + MER5B DNA MER1_type 92 127 -51 2220 119 0 3 chrX 24030751 24031054 -152943086 - AluSx SINE Alu -10 302 1 336 160 21 96 chrX 24031054 24031113 -152943027 + MER5B DNA MER1_type 127 178 0 24 32 0 0 chrX 24031158 24031189 -152942951 + AT_rich Low_complexity Low_complexity 1 31 0 502 253 70 70 chrX 24031359 24031479 -152942661 + MER5A DNA MER1_type 4 126 -63 6629 63 17 0 chrX 24031479 24032677 -152941463 - L1PA8A LINE L1 0 6131 4927 502 253 70 70 chrX 24032677 24032742 -152941398 + MER5A DNA MER1_type 125 189 0 2383 88 7 0 chrX 24033734 24034041 -152940099 - AluY SINE Alu -2 309 1 269 279 13 0 chrX 24035025 24035104 -152939036 - L2 LINE L2 -227 3045 2966 409 184 144 103 chrX 24035151 24035325 -152938815 - MER5A DNA MER1_type 0 189 9 858 191 6 11 chrX 24036110 24036288 -152937852 + MER5B DNA MER1_type 2 178 0 386 217 200 8 chrX 24036572 24036692 -152937448 + MIR3 SINE MIR 16 158 -50 824 268 0 0 chrX 24036713 24036896 -152937244 - MER5A DNA MER1_type -6 183 1 711 296 80 4 chrX 24036984 24037210 -152936930 + MIR SINE MIR 3 245 -17 483 305 8 8 chrX 24037540 24037668 -152936472 + MIR3 SINE MIR 73 200 -8 434 271 98 64 chrX 24038317 24038757 -152935383 + MLT1L LTR MaLR 142 596 -19 270 264 38 0 chrX 24039673 24039751 -152934389 + MIR SINE MIR 60 146 -62 28 29 0 0 chrX 24039774 24039809 -152934331 + AT_rich Low_complexity Low_complexity 1 35 0 321 148 148 78 chrX 24040478 24040564 -152933576 - L2 LINE L2 -17 3296 3199 1731 164 74 11 chrX 24040564 24040917 -152933223 + THE1C LTR MaLR 1 375 0 321 148 148 78 chrX 24040917 24040945 -152933195 - L2 LINE L2 -114 3199 3174 252 0 0 0 chrX 24041219 24041247 -152932893 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 268 220 11 22 chrX 24041764 24041855 -152932285 + L1MC4 LINE L1 6614 6703 -1339 252 200 0 0 chrX 24041855 24041910 -152932230 + (TA)n Simple_repeat Simple_repeat 1 55 0 1618 196 72 54 chrX 24041938 24042438 -152931702 + L1ME3 LINE L1 5648 6156 -6 473 259 69 23 chrX 24042651 24042782 -152931358 - MER91A DNA MER1_type -35 161 25 228 67 0 0 chrX 24042994 24043024 -152931116 + (TC)n Simple_repeat Simple_repeat 1 30 0 264 287 54 78 chrX 24043503 24043761 -152930379 - MLT1J LTR MaLR -212 299 48 4707 92 12 12 chrX 24044595 24045267 -152928873 + L1PA15 LINE L1 5490 6161 -4 878 115 18 24 chrX 24045272 24045437 -152928703 - L1MA5A LINE L1 -20 6277 6114 604 104 0 0 chrX 24045436 24045542 -152928598 + L1MA5A LINE L1 5937 6042 -255 * 320 280 170 0 chrX 24045832 24045932 -152928208 + MIR3 SINE MIR 90 206 -2 1210 195 75 23 chrX 24046129 24046477 -152927663 - L1MC4 LINE L1 -34 8008 7643 42083 35 5 3 chrX 24046479 24052625 -152921515 + L1PA3 LINE L1 3 6155 0 991 213 58 0 chrX 24052642 24052900 -152921240 - L1MC4 LINE L1 -387 7655 7383 356 250 236 14 chrX 24053450 24053598 -152920542 - MER5A DNA MER1_type 0 189 9 265 321 12 0 chrX 24054844 24054928 -152919212 - MIR SINE MIR -119 143 59 243 169 92 46 chrX 24055279 24055344 -152918796 - MIR SINE MIR -104 158 91 273 225 9 72 chrX 24055736 24055847 -152918293 + MLT1J2 LTR MaLR 318 421 -29 196 403 0 0 chrX 24056404 24056471 -152917669 - L2 LINE L2 -50 3263 3197 24 32 0 0 chrX 24056486 24056517 -152917623 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 24056622 24056643 -152917497 + AT_rich Low_complexity Low_complexity 1 21 0 1051 261 135 18 chrX 24056653 24057209 -152916931 + L1MC4a LINE L1 5293 5913 -1895 24 32 0 0 chrX 24057427 24057458 -152916682 + AT_rich Low_complexity Low_complexity 1 31 0 2087 143 96 69 chrX 24062207 24062655 -152911485 + MLT1C LTR MaLR 8 467 0 412 270 105 58 chrX 24063487 24063848 -152910292 + MLT1L LTR MaLR 215 509 -2 819 246 17 6 chrX 24064108 24064287 -152909853 - MER5A DNA MER1_type -7 182 2 226 301 80 44 chrX 24064382 24064495 -152909645 + L2 LINE L2 3156 3272 0 21 0 0 0 chrX 24064719 24064740 -152909400 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chrX 24065142 24065171 -152908969 + AT_rich Low_complexity Low_complexity 1 29 0 360 329 30 18 chrX 24065573 24065740 -152908400 + MIR SINE MIR 8 176 -86 673 248 147 0 chrX 24065746 24065903 -152908237 + MER5A DNA MER1_type 8 187 -2 * 992 221 47 4 chrX 24065898 24066133 -152908007 + MIR SINE MIR 3 247 -15 927 215 0 11 chrX 24066677 24066854 -152907286 - MER5B DNA MER1_type 0 178 4 1300 215 104 17 chrX 24067271 24067675 -152906465 + L1ME3 LINE L1 5723 6161 -1 890 247 31 45 chrX 24067706 24067993 -152906147 - L2 LINE L2 -4 3309 3027 344 283 53 18 chrX 24068287 24068400 -152905740 + L2 LINE L2 3182 3298 -15 321 336 0 25 chrX 24068692 24068814 -152905326 - MER5A DNA MER1_type 0 189 71 1978 100 0 21 chrX 24068830 24069167 -152904973 + AluSx SINE Alu 1 331 0 688 246 105 0 chrX 24069184 24069375 -152904765 - MIR SINE MIR -34 228 18 1406 263 68 3 chrX 24069847 24070216 -152903924 + LTR16C LTR ERVL 99 491 0 1652 245 113 10 chrX 24070605 24071111 -152903029 + MLT1G1 LTR MaLR 1 590 -5 1089 183 16 0 chrX 24072614 24072800 -152901340 + MER5A DNA MER1_type 1 189 0 406 307 129 21 chrX 24072835 24072975 -152901165 + MIR3 SINE MIR 31 185 -23 1220 243 48 68 chrX 24074466 24074580 -152899560 - L2 LINE L2 0 3313 3198 3241 185 29 2 chrX 24074580 24075127 -152899013 + MER68 LTR ERV1 1 562 0 1220 243 48 68 chrX 24075127 24075560 -152898580 - L2 LINE L2 -115 3198 2782 656 219 46 127 chrX 24076152 24076435 -152897705 + MLT1H LTR MaLR 13 272 -277 318 228 56 41 chrX 24076488 24076654 -152897486 + MLT1G1 LTR MaLR 382 595 0 372 338 91 58 chrX 24128010 24128407 -152845733 - L2 LINE L2 -559 2755 2346 364 347 14 23 chrX 24128617 24128915 -152845225 + MLT1K LTR MaLR 43 425 -163 21 36 0 0 chrX 24128968 24128996 -152845144 + AT_rich Low_complexity Low_complexity 1 28 0 301 260 195 0 chrX 24129014 24129137 -152845003 + MLT1K LTR MaLR 433 579 -9 417 296 89 11 chrX 24129312 24129498 -152844642 + MIR SINE MIR 44 254 -8 19979 31 0 0 chrX 24129671 24132853 -152841287 - L1PA5 LINE L1 -1 6153 2972 2952 121 0 0 chrX 24132853 24133291 -152840849 - L1P LINE L1 -5706 440 3 289 209 57 38 chrX 24134752 24134857 -152839283 - MLT1J LTR MaLR 0 511 405 960 284 38 38 chrX 24134861 24135256 -152838884 + L1M3d LINE L1 413 807 -5496 2099 244 65 35 chrX 24135657 24136765 -152837375 + L1M3d LINE L1 777 1818 -4518 417 191 0 38 chrX 24136873 24137010 -152837130 + L1M3d LINE L1 2419 2577 -3840 1310 202 26 19 chrX 24137018 24137076 -152837064 + L1M3d LINE L1 3178 3234 -3148 2246 157 18 0 chrX 24137076 24137472 -152836668 - MER57A LTR ERV1 0 403 1 1310 202 26 19 chrX 24137472 24137839 -152836301 + L1M3d LINE L1 3234 3606 -2776 11527 96 40 18 chrX 24137839 24139436 -152834704 + MER61A-int LTR ERV1 3349 4991 -226 2204 110 0 3 chrX 24139436 24139735 -152834405 - AluSg SINE Alu -12 298 1 11527 96 40 18 chrX 24139735 24139932 -152834208 + MER61A-int LTR ERV1 4991 5182 -35 472 79 0 0 chrX 24139958 24140021 -152834119 + MER61A-int LTR ERV1 5155 5217 0 1773 142 64 24 chrX 24140021 24140351 -152833789 + MER61A LTR ERV1 1 343 0 237 159 0 0 chrX 24141363 24141407 -152832733 + (TA)n Simple_repeat Simple_repeat 2 45 0 2265 95 0 22 chrX 24141466 24141782 -152832358 - AluSg1 SINE Alu 0 309 1 206 314 35 12 chrX 24142524 24142610 -152831530 + MIR3 SINE MIR 85 172 -36 268 337 0 11 chrX 24142674 24142763 -152831377 - MER5B DNA MER1_type -78 100 13 468 51 0 0 chrX 24143004 24143063 -152831077 + (TG)n Simple_repeat Simple_repeat 2 60 0 1958 165 67 5 chrX 24143152 24143557 -152830583 - MLT2C2 LTR ERVL -35 417 1 204 336 66 33 chrX 24144391 24144513 -152829627 - MER5A DNA MER1_type -1 188 63 2544 203 80 51 chrX 24144587 24145167 -152828973 - L1MD3 LINE L1 -1 7994 7432 319 189 232 0 chrX 24145167 24145262 -152828878 - MLT1F1 LTR MaLR -442 125 9 2544 203 80 51 chrX 24145262 24145761 -152828379 - L1MD3 LINE L1 -563 7432 6564 317 283 0 10 chrX 24145773 24145872 -152828268 - L1M4 LINE L1 -822 5324 5227 270 239 36 126 chrX 24146349 24146516 -152827624 - MIR SINE MIR -3 259 108 1885 251 58 8 chrX 24146822 24147564 -152826576 + L1ME LINE L1 4165 4943 -1203 1801 252 22 8 chrX 24147639 24148369 -152825771 + L1ME LINE L1 5055 5795 -371 258 32 0 0 chrX 24148727 24148758 -152825382 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6758 32 8 1 chrX 24148758 24149604 -152824536 - L1PA5 LINE L1 -18 6136 5285 1899 162 0 7 chrX 24153036 24153338 -152820802 + AluJb SINE Alu 1 300 -12 219 114 0 0 chrX 24154289 24154324 -152819816 + (CA)n Simple_repeat Simple_repeat 2 36 0 3269 191 10 5 chrX 24155617 24156219 -152817921 + L1PA13 LINE L1 106 710 -6077 414 250 0 0 chrX 24156221 24156317 -152817823 + L1PA13 LINE L1 762 857 -5930 * 1405 223 54 5 chrX 24156316 24156684 -152817456 + L1 LINE L1 4709 5094 -1052 804 295 26 57 chrX 24156761 24157185 -152816955 + LTR67 LTR ERVL 114 524 -33 1295 93 52 0 chrX 24157825 24158019 -152816121 + L1PA13 LINE L1 5952 6155 -8 386 256 311 11 chrX 24158067 24158247 -152815893 - MLT1K LTR MaLR -338 250 17 209 333 13 13 chrX 24158750 24158828 -152815312 + MIR SINE MIR 59 136 -126 30 0 0 0 chrX 24158858 24158888 -152815252 + AT_rich Low_complexity Low_complexity 1 30 0 340 298 39 10 chrX 24159152 24159256 -152814884 - L2 LINE L2 -19 3253 3147 231 325 0 12 chrX 24159266 24159346 -152814794 - MLT1K LTR MaLR -324 264 186 240 309 99 25 chrX 24159362 24159443 -152814697 - MER5A DNA MER1_type -66 123 37 291 326 37 66 chrX 24160811 24161097 -152813043 - LTR16A1 LTR ERVL 0 457 182 207 214 0 0 chrX 24161991 24162033 -152812107 - MIR SINE MIR -5 257 216 509 265 127 0 chrX 24162430 24162587 -152811553 - MER5A DNA MER1_type -6 183 4 800 236 6 6 chrX 24162598 24162772 -152811368 - MER5B DNA MER1_type 0 178 5 30936 118 10 68 chrX 24162884 24168395 -152805745 + L1P LINE L1 9 5198 -948 2156 284 83 19 chrX 24168448 24169286 -152804854 - HAL1 LINE L1 -1574 933 42 2035 108 14 14 chrX 24169435 24169723 -152804417 + AluSx SINE Alu 1 288 -24 567 43 0 0 chrX 24169723 24169793 -152804347 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 265 300 83 25 chrX 24170944 24171064 -152803076 - MIR SINE MIR -66 142 16 27 81 0 0 chrX 24171118 24171180 -152802960 + AT_rich Low_complexity Low_complexity 1 62 0 27 62 0 0 chrX 24171313 24171361 -152802779 + AT_rich Low_complexity Low_complexity 1 48 0 799 226 0 46 chrX 24171668 24171863 -152802277 + AluJo SINE Alu 127 312 0 1767 210 29 51 chrX 24171863 24172349 -152801791 - L1MC4 LINE L1 -231 7811 7337 1791 176 0 7 chrX 24172903 24173205 -152800935 + AluJb SINE Alu 1 300 -12 875 279 58 79 chrX 24174006 24174078 -152800062 - LTR16C LTR ERVL 0 491 419 1424 225 41 41 chrX 24174078 24174443 -152799697 - MLT1A1 LTR MaLR 0 365 1 875 279 58 79 chrX 24174443 24174786 -152799354 - LTR16C LTR ERVL -72 419 85 846 280 101 67 chrX 24175753 24176189 -152797951 - LTR16B LTR ERVL 0 464 14 896 295 62 3 chrX 24177561 24177962 -152796178 + LTR16C LTR ERVL 3 464 -27 2362 179 12 2 chrX 24177965 24178374 -152795766 - MSTB LTR MaLR -13 413 1 1095 213 77 0 chrX 24178578 24178785 -152795355 + MER58A DNA MER1_type 1 223 -1 196 333 11 67 chrX 24179277 24179367 -152794773 + L2 LINE L2 3169 3253 -19 206 375 12 12 chrX 24179983 24180063 -152794077 - L2 LINE L2 -91 3181 3102 652 223 193 17 chrX 24180136 24180374 -152793766 - LTR16A1 LTR ERVL -1 456 177 232 119 48 24 chrX 24180545 24180587 -152793553 + LTR67 LTR ERVL 21 63 -494 318 271 119 17 chrX 24180640 24180758 -152793382 + LTR67 LTR ERVL 428 557 0 291 54 0 0 chrX 24181070 24181107 -152793033 + (CA)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chrX 24181106 24181127 -152793013 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 183 283 176 31 chrX 24181248 24181407 -152792733 - L2 LINE L2 -1266 2048 1867 399 265 124 105 chrX 24181541 24181847 -152792293 + L2 LINE L2 2958 3269 -3 967 228 18 18 chrX 24182666 24182890 -152791250 - MER58A DNA MER1_type 0 224 1 548 243 14 27 chrX 24183145 24183293 -152790847 + MER58B DNA MER1_type 196 341 0 293 231 0 15 chrX 24183435 24183500 -152790640 + MER5B DNA MER1_type 112 175 -3 566 241 154 12 chrX 24183511 24183673 -152790467 - MER5A DNA MER1_type -1 188 4 522 226 26 0 chrX 24183702 24183817 -152790323 - MER5B DNA MER1_type -59 119 2 1893 140 10 0 chrX 24184392 24184685 -152789455 + L1PA13 LINE L1 5861 6156 -7 929 220 27 0 chrX 24184739 24184925 -152789215 - MIR SINE MIR -32 230 40 2150 152 42 25 chrX 24185316 24185672 -152788468 + THE1B LTR MaLR 3 364 0 520 321 120 23 chrX 24186234 24186766 -152787374 + L2 LINE L2 2105 2688 -626 2187 85 7 0 chrX 24187106 24187415 -152786725 - AluSp SINE Alu 0 312 2 364 108 54 0 chrX 24187495 24187569 -152786571 + (CACCC)n Simple_repeat Simple_repeat 1 78 0 335 267 217 65 chrX 24188453 24188790 -152785350 - L1M2 LINE L1 -5542 1307 920 320 317 66 42 chrX 24188817 24188984 -152785156 - HAL1 LINE L1 -1416 1091 921 386 273 81 12 chrX 24189639 24189800 -152784340 + MLT1J2 LTR MaLR 1 172 -278 569 301 24 10 chrX 24190542 24190748 -152783392 - L1M4c LINE L1 -4623 2023 1815 4820 173 40 16 chrX 24190793 24191683 -152782457 + MSTA-int LTR MaLR 740 1651 0 2095 185 75 5 chrX 24191683 24192083 -152782057 + MSTA LTR MaLR 1 428 0 2846 238 39 41 chrX 24192083 24192902 -152781238 - L1M4c LINE L1 -4827 1819 1000 1141 236 26 92 chrX 24192902 24193292 -152780848 + MLT1A1 LTR MaLR 1 364 -1 2846 238 39 41 chrX 24193292 24193469 -152780671 - L1M4c LINE L1 -5646 1000 822 180 0 0 0 chrX 24193469 24193489 -152780651 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 2846 238 39 41 chrX 24193489 24193546 -152780594 - L1M4c LINE L1 -5824 822 766 1498 130 42 13 chrX 24193546 24193784 -152780356 + AluSq SINE Alu 37 281 -32 244 96 58 0 chrX 24193804 24193856 -152780284 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 246 241 0 0 chrX 24193863 24193921 -152780219 - L1M4c LINE L1 -5771 771 714 343 267 13 0 chrX 24193924 24193999 -152780141 + ERVL LTR ERVL 3407 3482 -2282 201 182 0 23 chrX 24194371 24194415 -152779725 + MIR3 SINE MIR 10 52 -156 228 35 0 0 chrX 24194426 24194455 -152779685 + (CA)n Simple_repeat Simple_repeat 2 30 0 396 340 92 5 chrX 24194616 24194801 -152779339 + MIR SINE MIR 58 258 -4 1203 151 131 4 chrX 24194844 24194870 -152779270 - L1MA9 LINE L1 -7 6305 6284 285 29 0 0 chrX 24194870 24194904 -152779236 + (TA)n Simple_repeat Simple_repeat 2 35 0 1203 151 131 4 chrX 24194904 24195136 -152779004 - L1MA9 LINE L1 -28 6284 6014 231 286 0 29 chrX 24195645 24195715 -152778425 - MLT1L LTR MaLR -547 68 1 775 265 21 0 chrX 24195910 24196099 -152778041 - MER58A DNA MER1_type -31 193 1 402 69 0 0 chrX 24196142 24196200 -152777940 + (TG)n Simple_repeat Simple_repeat 1 58 0 929 203 65 76 chrX 24196366 24196657 -152777483 - MLT1A2 LTR MaLR -7 367 80 2292 189 20 0 chrX 24196657 24197053 -152777087 + LTR57 LTR ERVL 1 404 -7 446 206 22 11 chrX 24197051 24197143 -152776997 - MLT1A2 LTR MaLR -281 93 1 * 279 210 0 0 chrX 24197143 24197205 -152776935 - MLT1A2-int LTR MaLR 0 1735 1674 1313 204 26 71 chrX 24197205 24197587 -152776553 + LTR8 LTR ERV1 176 540 -151 1940 128 10 0 chrX 24197937 24198227 -152775913 + L1PA13 LINE L1 5864 6156 -7 1032 205 35 0 chrX 24198267 24198467 -152775673 - MIR SINE MIR -16 246 40 2123 152 33 33 chrX 24198859 24199221 -152774919 + THE1B LTR MaLR 3 364 0 617 320 116 22 chrX 24199782 24200317 -152773823 + L2 LINE L2 2105 2689 -625 370 101 29 0 chrX 24200812 24200881 -152773259 + (CACCC)n Simple_repeat Simple_repeat 3 73 0 333 308 116 70 chrX 24201682 24202123 -152772017 - L1M2 LINE L1 -5633 1216 756 226 270 166 58 chrX 24202170 24202411 -152771729 - HAL1 LINE L1 -1429 1078 812 415 271 79 13 chrX 24202976 24203156 -152770984 + MLT1J2 LTR MaLR 1 189 -257 231 319 56 44 chrX 24203212 24203372 -152770768 + MLT1J2 LTR MaLR 286 447 -3 474 18 0 0 chrX 24203555 24203610 -152770530 + (CA)n Simple_repeat Simple_repeat 2 56 0 1600 165 26 36 chrX 24203667 24203976 -152770164 + AluJb SINE Alu 1 306 -6 184 305 0 95 chrX 24204289 24204384 -152769756 + L2 LINE L2 3137 3222 -50 2066 109 44 3 chrX 24204607 24204900 -152769240 + AluSq SINE Alu 1 305 -8 230 256 51 77 chrX 24204992 24205122 -152769018 - MIR SINE MIR -64 144 53 822 114 0 0 chrX 24205542 24205656 -152768484 + THE1C-int LTR MaLR 104 217 -1363 * 6645 154 13 14 chrX 24205648 24206750 -152767390 + THE1C-int LTR MaLR 477 1576 -4 809 144 65 26 chrX 24206754 24206907 -152767233 + THE1C LTR MaLR 1 159 -216 192 267 0 0 chrX 24207176 24207221 -152766919 + L3b LINE CR1 1399 1443 -140 4426 121 26 3 chrX 24207262 24207925 -152766215 - L1MA2 LINE L1 0 6304 5627 1742 156 4 0 chrX 24207935 24208204 -152765936 - L1M1 LINE L1 -5658 1907 1638 381 259 101 32 chrX 24208489 24208678 -152765462 - L1MC5 LINE L1 -87 7874 7673 2137 174 104 45 chrX 24208964 24209481 -152764659 - LTR10A LTR ERV1 -61 548 1 11317 151 15 23 chrX 24209482 24212627 -152761513 - Harlequin LTR ERV1 -2 6647 1818 332 214 167 0 chrX 24212627 24212711 -152761429 + LTR8 LTR ERV1 156 253 -438 1052 22 0 7 chrX 24212713 24212851 -152761289 - HERVI LTR ERV1 -5176 1720 1584 * 5397 104 10 19 chrX 24212828 24213710 -152760430 - HERVI LTR ERV1 -3269 3380 694 3569 195 29 14 chrX 24213728 24214462 -152759678 - HERVI LTR ERV1 -5198 2587 1843 780 172 6 41 chrX 24214456 24214625 -152759515 - HERVI LTR ERV1 -5941 708 546 * 806 216 50 25 chrX 24214698 24214976 -152759164 - HERVI LTR ERV1 -6364 285 1 1639 153 84 38 chrX 24214986 24215447 -152758693 - LTR10A LTR ERV1 -63 546 1 837 69 0 0 chrX 24215636 24215738 -152758402 - AluSc SINE Alu -12 297 196 3045 194 58 33 chrX 24215788 24216460 -152757680 + ERVL LTR ERVL 679 1367 -4397 1421 170 164 72 chrX 24216511 24217011 -152757129 - LTR49 LTR ERV1 -49 546 1 7015 161 8 16 chrX 24217011 24218256 -152755884 + ERVL LTR ERVL 1364 2598 -3166 2965 94 18 0 chrX 24218409 24218846 -152755294 - L1MA1 LINE L1 0 6302 5858 1326 245 51 72 chrX 24218846 24219458 -152754682 - LTR9 LTR ERV1 -13 599 1 3344 101 17 20 chrX 24219458 24220139 -152754001 - L1M1 LINE L1 -517 5787 5111 1219 96 45 0 chrX 24220139 24220338 -152753802 - LTR56 LTR ERV1 -110 335 128 1646 331 52 47 chrX 24221063 24222666 -152751474 - LTR56-int LTR ERV1 -253 6869 5260 362 292 86 39 chrX 24222701 24223061 -152751079 - PABL_B-int LTR ERV1 -1927 5829 5453 677 140 19 0 chrX 24223329 24223436 -152750704 - AluSx SINE Alu -9 301 193 1019 111 0 14 chrX 24223437 24223581 -152750559 - AluSx SINE Alu -165 147 6 1362 360 33 42 chrX 24223838 24225596 -152748544 - PABL_B-int LTR ERV1 -2867 4255 2513 300 48 24 0 chrX 24225702 24225744 -152748396 - tRNA-Met-e tRNA tRNA -32 43 1 861 359 32 7 chrX 24226638 24227193 -152746947 - PABL_B-int LTR ERV1 -5596 1526 958 285 279 18 34 chrX 24227450 24227654 -152746486 - PABL_B-int LTR ERV1 -6405 717 539 690 138 8 8 chrX 24228612 24228735 -152745405 - LTR56 LTR ERV1 -314 131 9 17250 144 48 15 chrX 24228741 24231809 -152742331 + ERVL LTR ERVL 2596 5764 0 2003 86 36 9 chrX 24232540 24232929 -152741211 + LTR7 LTR ERV1 1 450 0 10999 128 4 34 chrX 24232929 24235359 -152738781 + HERVH LTR ERV1 1 2661 -5052 2444 57 0 0 chrX 24235360 24235685 -152738455 + AluY SINE Alu 1 325 0 234 197 99 14 chrX 24235770 24235841 -152738299 + L1ME3 LINE L1 6006 6082 -80 1072 154 8 0 chrX 24235995 24239912 -152734228 + ALR/Alpha Satellite centromeric 1 3949 -28 1032 129 68 57 chrX 24240503 24240783 -152733357 - Charlie1 DNA MER1_type -2 2759 2477 470 211 61 9 chrX 24240790 24240904 -152733236 - Charlie1 DNA MER1_type -2641 120 1 354 254 63 72 chrX 24241474 24241651 -152732489 - MIR SINE MIR -62 146 19 23 68 0 0 chrX 24242172 24242216 -152731924 + AT_rich Low_complexity Low_complexity 1 44 0 250 269 15 0 chrX 24242847 24242914 -152731226 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 8480 197 67 38 chrX 24243884 24246807 -152727333 + L1MC1 LINE L1 2590 5607 -726 499 208 10 0 chrX 24246808 24246904 -152727236 - Tigger7 DNA MER2_type -1 2586 2490 * 1427 187 23 8 chrX 24246903 24247165 -152726975 - Tigger7 DNA MER2_type -2220 267 2 3604 163 31 19 chrX 24247173 24247877 -152726263 + L1MC1 LINE L1 5621 6333 0 295 304 16 24 chrX 24247937 24248062 -152726078 + L2 LINE L2 2278 2401 -913 802 272 63 116 chrX 24248075 24248408 -152725732 + L2 LINE L2 2817 3113 -200 198 71 0 0 chrX 24248408 24248436 -152725704 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 802 272 63 116 chrX 24248436 24248627 -152725513 + L2 LINE L2 3113 3313 0 229 286 41 68 chrX 24249233 24249380 -152724760 + MER5A DNA MER1_type 46 188 -1 1882 161 7 23 chrX 24249390 24249700 -152724440 + AluJb SINE Alu 3 307 -5 2585 48 0 19 chrX 24249914 24250229 -152723911 + AluSg SINE Alu 1 309 -1 656 231 131 0 chrX 24250356 24250516 -152723624 + MER5A DNA MER1_type 9 189 0 5445 116 60 14 chrX 24250719 24251816 -152722324 - Tigger3b DNA MER2_type 0 1231 2 250 224 35 0 chrX 24251833 24251891 -152722249 - MIR SINE MIR -94 168 109 583 258 79 0 chrX 24253378 24253556 -152720584 + MIR SINE MIR 70 261 -1 22 0 0 0 chrX 24253556 24253578 -152720562 + AT_rich Low_complexity Low_complexity 1 22 0 202 226 0 38 chrX 24254034 24254087 -152720053 + MIR3 SINE MIR 155 205 -3 2164 85 7 3 chrX 24254468 24254792 -152719348 + AluSp SINE Alu 1 325 0 2412 198 60 46 chrX 24255572 24256725 -152717415 + L1MD2 LINE L1 5589 6231 -11 2656 183 13 48 chrX 24256725 24256782 -152717358 + L1MA10 LINE L1 5734 5791 -543 2504 77 44 0 chrX 24256782 24257122 -152717018 + THE1A LTR MaLR 1 355 0 11746 95 4 5 chrX 24257123 24258703 -152715437 + THE1A-int LTR MaLR 2 1580 0 2746 65 14 3 chrX 24258703 24259054 -152715086 + THE1A LTR MaLR 1 355 0 2656 183 13 48 chrX 24259054 24259601 -152714539 + L1MA10 LINE L1 5789 6320 -14 23 54 0 0 chrX 24260008 24260045 -152714095 + AT_rich Low_complexity Low_complexity 1 37 0 46 33 0 0 chrX 24261739 24261799 -152712341 + AT_rich Low_complexity Low_complexity 1 60 0 858 189 24 0 chrX 24262438 24262607 -152711533 - MER5A DNA MER1_type -15 174 2 2616 128 39 36 chrX 24262731 24263199 -152710941 - Tigger3b DNA MER2_type 0 1231 763 931 114 0 0 chrX 24263213 24263336 -152710804 + FLAM_C SINE Alu 1 123 -20 183 62 104 0 chrX 24263339 24263387 -152710753 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 3430 99 92 128 chrX 24263394 24264194 -152709946 - Tigger3b DNA MER2_type -455 776 5 686 305 168 19 chrX 24264283 24264598 -152709542 - L3 LINE CR1 -235 1342 981 246 198 70 70 chrX 24264996 24265082 -152709058 + MER117 DNA MER1_type 95 180 -17 343 48 0 0 chrX 24265154 24265196 -152708944 - MER4E LTR ERV1 -72 694 653 25 0 0 0 chrX 24265756 24265781 -152708359 + AT_rich Low_complexity Low_complexity 1 25 0 1560 154 3 96 chrX 24265979 24266331 -152707809 - AluJb SINE Alu 0 323 1 379 381 30 5 chrX 24268678 24268875 -152705265 + MIR3 SINE MIR 6 207 -1 24 32 0 0 chrX 24269614 24269645 -152704495 + AT_rich Low_complexity Low_complexity 1 31 0 2080 132 3 0 chrX 24271452 24271755 -152702385 - AluSx SINE Alu -8 304 1 202 265 0 20 chrX 24272124 24272173 -152701967 - L3 LINE CR1 -4 1573 1526 397 259 48 78 chrX 24272372 24272538 -152701602 - MIR3 SINE MIR -36 172 12 2264 151 145 29 chrX 24272543 24272775 -152701365 + L1MC1 LINE L1 5170 5374 -959 2032 128 8 68 chrX 24272775 24273142 -152700998 - MER7A DNA MER2_type -2 344 2 2264 151 145 29 chrX 24273142 24273808 -152700332 + L1MC1 LINE L1 5374 6229 -104 344 186 105 23 chrX 24273800 24273886 -152700254 + L1MB5 LINE L1 5998 6090 -84 * 416 177 0 0 chrX 24273943 24274022 -152700118 + L1MB5 LINE L1 6096 6174 0 1200 174 148 23 chrX 24275537 24275842 -152698298 + MER2 DNA MER2_type 1 343 -1 192 214 143 0 chrX 24276843 24276899 -152697241 + MIR SINE MIR 76 139 -69 587 219 0 17 chrX 24276970 24277089 -152697051 + FLAM_A SINE Alu 5 121 -12 1629 138 56 175 chrX 24277403 24277831 -152696309 + MER51A LTR ERV1 1 634 0 1891 171 48 45 chrX 24278857 24279278 -152694862 + MSTB2 LTR MaLR 36 457 0 237 286 0 26 chrX 24279618 24279695 -152694445 - MLT1L LTR MaLR -540 75 1 935 251 5 5 chrX 24279908 24280115 -152694025 - MER58A DNA MER1_type -2 222 16 205 316 63 0 chrX 24280348 24280427 -152693713 - MER5B DNA MER1_type -91 87 4 266 200 33 0 chrX 24280438 24280498 -152693642 - MER5A DNA MER1_type 0 189 128 360 275 54 27 chrX 24280836 24281008 -152693132 + MIR SINE MIR 4 175 -62 2401 174 24 5 chrX 24281840 24282265 -152691875 + Tigger2a DNA MER2_type 1 433 -1 3878 108 78 5 chrX 24282509 24283109 -152691031 + LTR9B LTR ERV1 1 644 0 353 281 141 36 chrX 24283588 24283780 -152690360 - MIR SINE MIR -47 215 4 2623 139 116 22 chrX 24283836 24284376 -152689764 + LTR24B LTR ERV1 1 635 0 22 0 0 0 chrX 24284539 24284561 -152689579 + AT_rich Low_complexity Low_complexity 1 22 0 380 198 62 0 chrX 24286154 24286235 -152687905 + MER103 DNA DNA 22 107 -59 286 283 0 0 chrX 24286324 24286384 -152687756 + L3 LINE CR1 1516 1575 -2 254 273 36 0 chrX 24286444 24286499 -152687641 - L3 LINE CR1 -7 1570 1514 24 53 0 0 chrX 24287097 24287135 -152687005 + AT_rich Low_complexity Low_complexity 1 38 0 388 48 32 16 chrX 24287575 24287638 -152686502 + (TTTTA)n Simple_repeat Simple_repeat 1 64 0 24950 28 3 0 chrX 24287638 24291404 -152682736 - L1PA3 LINE L1 -24 6131 2358 228 254 9 55 chrX 24292272 24292382 -152681758 + G-rich Low_complexity Low_complexity 1 105 0 207 0 0 0 chrX 24292895 24292918 -152681222 + (A)n Simple_repeat Simple_repeat 1 23 0 1848 192 93 50 chrX 24294457 24294941 -152679199 - MLT1D LTR MaLR 0 505 1 363 199 0 8 chrX 24294989 24295062 -152679078 - MER5B DNA MER1_type -36 153 73 182 303 37 64 chrX 24295641 24295750 -152678390 - L3 LINE CR1 -16 1561 1456 218 357 161 20 chrX 24295764 24296316 -152677824 + L2 LINE L2 2221 2850 -464 437 215 70 25 chrX 24297043 24297201 -152676939 + L1ME2 LINE L1 2706 2870 -3276 2657 250 59 32 chrX 24297215 24298992 -152675148 + L1ME2 LINE L1 4331 6154 -10 312 27 0 0 chrX 24298999 24299036 -152675104 + (CA)n Simple_repeat Simple_repeat 2 38 0 305 133 0 0 chrX 24299040 24299085 -152675055 + AluS SINE Alu 48 92 -211 430 293 48 52 chrX 24299185 24299414 -152674726 + AluJb SINE Alu 48 275 -27 512 247 133 19 chrX 24299477 24299635 -152674505 + MER8 DNA MER2_type 4 179 -60 411 179 30 0 chrX 24299607 24299674 -152674466 + MER2 DNA MER2_type 277 345 0 * 255 285 102 0 chrX 24299773 24299910 -152674230 + L1MC4 LINE L1 7891 8041 -1 21 0 0 0 chrX 24300769 24300790 -152673350 + AT_rich Low_complexity Low_complexity 1 21 0 574 315 35 11 chrX 24301091 24301351 -152672789 + LTR16B LTR ERVL 124 389 -75 311 113 19 0 chrX 24301525 24301578 -152672562 + (CACCC)n Simple_repeat Simple_repeat 5 58 0 313 276 128 64 chrX 24302495 24302698 -152671442 - L1M2 LINE L1 -5962 887 672 1617 160 28 53 chrX 24302946 24303265 -152670875 + AluJb SINE Alu 1 311 -1 23 0 0 0 chrX 24303325 24303348 -152670792 + AT_rich Low_complexity Low_complexity 1 23 0 2118 124 0 10 chrX 24303916 24304222 -152669918 + AluSq SINE Alu 1 303 -10 1776 119 4 15 chrX 24304426 24304687 -152669453 - AluSx SINE Alu -15 297 40 2342 191 158 104 chrX 24306608 24307161 -152666979 - L1MC3 LINE L1 -1 7784 7263 397 213 43 21 chrX 24307161 24307255 -152666885 - MLT1F1 LTR MaLR -436 131 36 2342 191 158 104 chrX 24307255 24307631 -152666509 - L1MC3 LINE L1 -522 7263 6706 373 310 148 20 chrX 24307917 24308120 -152666020 - MIR SINE MIR -3 259 31 401 100 0 0 chrX 24308143 24308203 -152665937 - L1MA9 LINE L1 -6 6306 6247 219 317 233 8 chrX 24308215 24308335 -152665805 + L2 LINE L2 3163 3309 -4 1363 254 157 52 chrX 24308926 24309984 -152664156 - L2 LINE L2 -1 3312 2136 14510 38 0 5 chrX 24310142 24311918 -152662222 - L1P LINE L1 -3824 2322 555 375 23 0 0 chrX 24311937 24311981 -152662159 + (TG)n Simple_repeat Simple_repeat 2 45 0 187 314 15 117 chrX 24312889 24312956 -152661184 - L2 LINE L2 -1 3271 3223 1421 127 28 0 chrX 24312956 24313168 -152660972 + MER20 DNA MER1_type 2 219 0 187 314 15 117 chrX 24313168 24313237 -152660903 - L2 LINE L2 -49 3223 3149 2316 91 60 28 chrX 24313266 24313619 -152660521 - THE1B LTR MaLR 0 364 1 269 49 0 0 chrX 24314287 24314328 -152659812 - L1MA9 LINE L1 -37 6275 6235 2075 114 0 7 chrX 24314329 24314626 -152659514 - AluSg SINE Alu -15 295 1 582 265 40 30 chrX 24314717 24314917 -152659223 + MIR SINE MIR 19 220 -42 235 321 57 57 chrX 24315807 24315947 -152658193 - MIR SINE MIR -66 196 57 305 181 69 28 chrX 24315988 24316060 -152658080 - L1ME3A LINE L1 -58 6112 6038 473 323 8 0 chrX 24316118 24316245 -152657895 - L2 LINE L2 -6 3266 3139 277 350 119 7 chrX 24316287 24316430 -152657710 - L2 LINE L2 -410 2904 2746 704 212 21 106 chrX 24316901 24317164 -152656976 - L1ME3A LINE L1 -189 5981 5742 1887 197 19 8 chrX 24317164 24317525 -152656615 + MLT1A1 LTR MaLR 1 365 0 704 212 21 106 chrX 24317525 24317544 -152656596 - L1ME3A LINE L1 -428 5742 5723 2757 136 9 9 chrX 24317716 24318142 -152655998 + MSTA LTR MaLR 1 426 -2 9031 171 28 6 chrX 24318144 24319760 -152654380 + MSTA-int LTR MaLR 1 1651 0 2571 103 75 0 chrX 24319760 24320158 -152653982 + MSTA LTR MaLR 1 428 0 679 244 30 36 chrX 24320653 24320821 -152653319 - MIR SINE MIR -62 200 34 486 235 14 52 chrX 24320999 24321187 -152652953 + L1MA10 LINE L1 5988 6333 -1 1377 180 34 8 chrX 24321389 24321430 -152652710 + MLT1F LTR MaLR 269 307 -235 2135 116 0 7 chrX 24321430 24321732 -152652408 + AluSx SINE Alu 1 300 -12 1377 180 34 8 chrX 24321732 24321957 -152652183 + MLT1F LTR MaLR 307 542 0 188 67 33 0 chrX 24321984 24322014 -152652126 + (TA)n Simple_repeat Simple_repeat 1 31 0 2932 184 73 81 chrX 24322016 24322848 -152651292 - L1ME3A LINE L1 -25 6145 5320 23 0 0 0 chrX 24323815 24323838 -152650302 + AT_rich Low_complexity Low_complexity 1 23 0 228 130 259 0 chrX 24324941 24324995 -152649145 - L1ME LINE L1 -294 5827 5760 261 188 0 58 chrX 24325014 24325083 -152649057 + L1ME LINE L1 5769 5833 -288 235 234 11 85 chrX 24327000 24327094 -152647046 - MIR SINE MIR -71 191 105 259 354 79 24 chrX 24327625 24327752 -152646388 + L2 LINE L2 3121 3254 -18 301 232 87 43 chrX 24327986 24328171 -152645969 - L1ME LINE L1 -289 5832 5640 252 59 0 0 chrX 24328504 24328538 -152645602 + (A)n Simple_repeat Simple_repeat 1 34 0 297 306 99 0 chrX 24328562 24328673 -152645467 - L2 LINE L2 -3 3269 3148 235 267 0 17 chrX 24330554 24330614 -152643526 - L2 LINE L2 0 3272 3214 189 0 0 0 chrX 24330990 24331011 -152643129 + (TA)n Simple_repeat Simple_repeat 2 22 0 1204 256 37 16 chrX 24331013 24331388 -152642752 + L1ME LINE L1 878 1260 -5294 1954 187 117 17 chrX 24331421 24331881 -152642259 + L1ME LINE L1 158 663 -5901 1200 217 68 10 chrX 24331883 24332178 -152641962 + MER2 DNA MER2_type 29 340 -5 2361 186 43 24 chrX 24332179 24332768 -152641372 + L1ME LINE L1 474 1051 -4994 973 283 89 20 chrX 24332774 24333312 -152640828 + L1ME LINE L1 1270 1844 -4720 8707 155 27 33 chrX 24333317 24334949 -152639191 + L1MA8 LINE L1 3676 5319 -972 2091 120 0 33 chrX 24334949 24335250 -152638890 + AluSx SINE Alu 1 291 -21 8707 155 27 33 chrX 24335250 24335563 -152638577 + L1MA8 LINE L1 5319 5632 -659 6562 173 69 62 chrX 24335563 24337197 -152636943 - MER52A LTR ERV1 0 1755 1 1220 132 15 5 chrX 24337197 24337402 -152636738 + L1MA8 LINE L1 5629 5835 -456 1953 239 38 27 chrX 24337792 24338348 -152635792 + MER68 LTR ERV1 1 562 0 1150 238 58 69 chrX 24339954 24340488 -152633652 - L1ME LINE L1 -5198 872 345 1676 123 33 27 chrX 24340601 24340672 -152633468 + L1MA8 LINE L1 5902 5971 -320 2673 100 3 16 chrX 24340672 24341041 -152633099 - THE1B LTR MaLR 0 364 1 1676 123 33 27 chrX 24341041 24341270 -152632870 + L1MA8 LINE L1 5971 6204 -87 23 0 0 0 chrX 24341308 24341331 -152632809 + AT_rich Low_complexity Low_complexity 1 23 0 1777 287 61 26 chrX 24341331 24342680 -152631460 + L1ME LINE L1 1882 3235 -3329 507 314 138 45 chrX 24342689 24343065 -152631075 - MER68 LTR ERV1 -7 555 145 512 209 64 21 chrX 24343276 24343463 -152630677 + L1ME LINE L1 3257 3451 -3113 266 222 118 69 chrX 24344073 24344217 -152629923 - LTR40b LTR ERVL -42 420 270 * 678 329 91 35 chrX 24344101 24344585 -152629555 - REP3 LTR ERV -44 518 8 2072 68 68 4 chrX 24345196 24345476 -152628664 + LTR3 LTR ERVK 1 298 -134 501 17 0 0 chrX 24345601 24345659 -152628481 + (CA)n Simple_repeat Simple_repeat 1 58 0 1589 171 23 32 chrX 24345716 24346025 -152628115 + AluJb SINE Alu 1 306 -6 2311 72 10 0 chrX 24346656 24346949 -152627191 + AluY SINE Alu 1 296 -15 268 330 76 8 chrX 24348699 24348817 -152625323 - MIR SINE MIR -90 172 47 294 222 16 0 chrX 24349068 24349131 -152625009 + L2 LINE L2 3248 3311 -2 679 321 123 19 chrX 24350969 24351505 -152622635 - L2 LINE L2 -625 2689 2098 910 236 52 0 chrX 24352333 24352524 -152621616 + MIR SINE MIR 40 240 -22 384 310 7 14 chrX 24353478 24353620 -152620520 - MIR SINE MIR -34 228 88 289 316 12 10 chrX 24353667 24353769 -152620371 - MIR3 SINE MIR -135 73 11 22 0 0 0 chrX 24355047 24355069 -152619071 + AT_rich Low_complexity Low_complexity 1 22 0 554 274 123 11 chrX 24355069 24355248 -152618892 - MIR SINE MIR -49 213 15 306 0 0 0 chrX 24355929 24355963 -152618177 + (TAGA)n Simple_repeat Simple_repeat 2 35 0 207 204 0 0 chrX 24355976 24356020 -152618120 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 359 162 0 0 chrX 24356090 24356158 -152617982 - MLT1E2 LTR MaLR -8 618 551 1002 247 4 21 chrX 24356298 24356537 -152617603 - MLT1D LTR MaLR -258 247 13 22 0 0 0 chrX 24357722 24357744 -152616396 + AT_rich Low_complexity Low_complexity 1 22 0 748 222 167 52 chrX 24358717 24359041 -152615099 + MLT1J2 LTR MaLR 1 361 -89 22 35 0 0 chrX 24359309 24359338 -152614802 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 24559893 24559914 -152414226 + AT_rich Low_complexity Low_complexity 1 21 0 2312 114 0 0 chrX 24560036 24560342 -152413798 - AluSx SINE Alu -6 306 1 272 318 68 23 chrX 24560962 24561094 -152413046 - MIR3 SINE MIR -10 198 61 266 212 273 0 chrX 24561117 24561183 -152412957 - MIR SINE MIR -10 252 169 498 289 57 26 chrX 24561322 24561550 -152412590 - MLT1J1 LTR MaLR -141 305 71 259 316 152 19 chrX 24562600 24562758 -152411382 - MIR SINE MIR -64 198 20 2562 77 0 0 chrX 24562829 24563142 -152410998 + AluSp SINE Alu 1 313 0 773 174 0 0 chrX 24563180 24563312 -152410828 - MER68 LTR ERV1 -7 555 424 991 273 67 38 chrX 24564214 24564296 -152409844 - L2 LINE L2 -1 3312 3234 2116 91 26 42 chrX 24564296 24564604 -152409536 + AluSx SINE Alu 1 303 -9 991 273 67 38 chrX 24564604 24564938 -152409202 - L2 LINE L2 -79 3234 2884 233 54 0 54 chrX 24565089 24565126 -152409014 - L1MB1 LINE L1 -87 6081 6047 1944 96 57 21 chrX 24565126 24565407 -152408733 + AluSx SINE Alu 1 291 -21 2297 99 3 0 chrX 24565407 24565701 -152408439 + AluSg SINE Alu 1 295 -15 4156 173 18 2 chrX 24565723 24566609 -152407531 - L1MB1 LINE L1 -112 6056 5156 1387 191 8 3 chrX 24566904 24567403 -152406737 - MER68 LTR ERV1 -7 555 1 1038 211 76 63 chrX 24568185 24568565 -152405575 - MLT1B LTR MaLR 0 390 6 460 281 121 17 chrX 24569010 24569241 -152404899 + MIR SINE MIR 2 256 -6 207 139 0 0 chrX 24570213 24570249 -152403891 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 2376 36 0 0 chrX 24570429 24570707 -152403433 + L1PA4 LINE L1 5864 6141 -14 726 206 0 78 chrX 24570884 24571127 -152403013 - L1MC5 LINE L1 -1003 6958 6735 305 205 179 27 chrX 24571185 24571297 -152402843 - L1ME4a LINE L1 -2 6119 5991 645 269 103 0 chrX 24572274 24572430 -152401710 + MER5A DNA MER1_type 7 178 -11 1957 178 151 14 chrX 24573029 24573473 -152400667 - MLT1D LTR MaLR 0 505 1 1961 119 0 0 chrX 24574287 24574547 -152399593 - AluSg SINE Alu -13 297 38 2080 84 66 31 chrX 24575289 24575575 -152398565 - AluSq SINE Alu -17 296 1 2181 109 3 0 chrX 24575805 24576098 -152398042 + AluSx SINE Alu 1 294 -18 356 332 20 40 chrX 24576579 24576829 -152397311 - L1MC4a LINE L1 -892 6916 6672 665 239 23 11 chrX 24577100 24577276 -152396864 - MER5B DNA MER1_type 0 178 1 201 158 0 26 chrX 24577902 24577940 -152396200 + CT-rich Low_complexity Low_complexity 3 39 0 199 326 0 0 chrX 24578156 24578202 -152395938 + MER5A DNA MER1_type 144 189 0 583 226 175 0 chrX 24578476 24578613 -152395527 - MER5A DNA MER1_type -7 182 22 585 217 0 121 chrX 24578629 24578781 -152395359 - MER5B DNA MER1_type -3 175 51 2127 115 7 0 chrX 24578781 24579076 -152395064 + AluSx SINE Alu 2 298 -14 585 217 0 121 chrX 24579076 24579121 -152395019 - MER5B DNA MER1_type -127 51 2 1145 269 46 39 chrX 24579711 24580172 -152393968 - LTR16B LTR ERVL 0 464 1 293 325 58 25 chrX 24581616 24581736 -152392404 + L2 LINE L2 3149 3272 0 * 356 321 37 22 chrX 24581734 24581868 -152392272 + MIR SINE MIR 6 141 -121 2155 107 11 0 chrX 24582111 24582425 -152391715 - AluSx SINE Alu 0 317 1 337 213 40 13 chrX 24582535 24582610 -152391530 + L2 LINE L2 3193 3269 -44 616 173 0 0 chrX 24583760 24583870 -152390270 - Tigger3(Golem) DNA MER2_type -1 3028 2919 534 228 18 110 chrX 24583975 24584087 -152390053 - LTR16A1 LTR ERVL -39 418 334 488 252 28 0 chrX 24584087 24584194 -152389946 + MER81 DNA DNA 5 114 0 534 228 18 110 chrX 24584194 24584300 -152389840 - LTR16A1 LTR ERVL -123 334 220 1095 213 49 67 chrX 24584551 24584941 -152389199 - MLT1B LTR MaLR 0 390 8 1708 220 26 46 chrX 24586287 24586746 -152387394 - LTR16A LTR ERVL 0 450 1 206 208 57 0 chrX 24587154 24587207 -152386933 - L2 LINE L2 -624 2690 2635 388 247 143 7 chrX 24587268 24587422 -152386718 + MER96 DNA MER1_type 1 175 0 485 208 71 54 chrX 24587537 24587705 -152386435 - L2 LINE L2 -208 3105 2935 1010 156 21 5 chrX 24588821 24589007 -152385133 - MER5A DNA MER1_type 0 189 1 736 255 82 50 chrX 24589226 24590006 -152384134 - L1ME4a LINE L1 -104 6017 5221 23 33 0 0 chrX 24590664 24590694 -152383446 + AT_rich Low_complexity Low_complexity 1 30 0 2288 108 3 0 chrX 24590699 24590994 -152383146 + AluSx SINE Alu 2 297 -15 346 266 131 84 chrX 24592024 24592475 -152381665 - LTR67 LTR ERVL 0 557 86 253 253 103 0 chrX 24592535 24592622 -152381518 + MIR SINE MIR 166 261 -1 449 265 135 71 chrX 24592871 24592979 -152381161 - MER5A DNA MER1_type 0 189 65 2166 117 3 16 chrX 24592979 24593287 -152380853 - AluSx SINE Alu -8 304 1 449 265 135 71 chrX 24593287 24593348 -152380792 - MER5A DNA MER1_type -124 65 9 364 353 19 32 chrX 24593808 24593964 -152380176 + MIR3 SINE MIR 4 157 -51 283 302 71 18 chrX 24593965 24594134 -152380006 + MER117 DNA MER1_type 2 179 -18 298 271 68 42 chrX 24594180 24594298 -152379842 - L2 LINE L2 -1 3271 3151 243 310 14 0 chrX 24594295 24594366 -152379774 - MIR3 SINE MIR -3 205 134 * 2291 91 0 0 chrX 24594374 24594692 -152379448 - AluSx SINE Alu 0 318 1 1007 133 0 111 chrX 24594794 24594884 -152379256 - MER3 DNA MER1_type 0 209 111 2252 95 0 7 chrX 24594884 24595200 -152378940 + AluSx SINE Alu 1 314 0 1007 133 0 111 chrX 24595200 24595342 -152378798 - MER3 DNA MER1_type -98 111 2 823 143 50 11 chrX 24595921 24596103 -152378037 - MER53 DNA DNA 0 189 1 505 295 99 56 chrX 24596214 24596556 -152377584 + L2 LINE L2 2943 3299 -14 411 269 70 43 chrX 24596567 24596753 -152377387 + MIR SINE MIR 2 192 -70 209 325 81 16 chrX 24596832 24596955 -152377185 + MIR SINE MIR 106 236 -26 5592 156 25 6 chrX 24597093 24597878 -152376262 - L1MA7 LINE L1 -426 5865 5096 2139 124 36 30 chrX 24597878 24598240 -152375900 + THE1B LTR MaLR 1 364 0 5592 156 25 6 chrX 24598240 24599045 -152375095 - L1MA7 LINE L1 -1195 5096 4249 2522 123 21 14 chrX 24599045 24599467 -152374673 + L1MA7 LINE L1 5858 6289 -2 276 228 114 65 chrX 24599545 24599668 -152374472 + MIR SINE MIR 124 252 -10 2092 114 7 13 chrX 24602404 24602703 -152371437 + AluSx SINE Alu 1 297 -15 2257 131 0 3 chrX 24602723 24603036 -152371104 - AluSx SINE Alu 0 312 1 323 394 0 78 chrX 24603460 24603640 -152370500 + MER91A DNA MER1_type 1 166 -30 1362 200 40 84 chrX 24604493 24604969 -152369171 + LTR16A1 LTR ERVL 1 455 -2 1619 83 46 0 chrX 24605384 24605601 -152368539 + MER30 DNA MER1_type 1 227 -3 1120 148 28 0 chrX 24605615 24605797 -152368343 - MER5A DNA MER1_type -2 187 1 419 258 275 17 chrX 24605904 24606082 -152368058 + MIR SINE MIR 31 254 -8 4503 168 161 20 chrX 24606560 24607580 -152366560 - Charlie1 DNA MER1_type 0 2761 1551 2275 105 0 0 chrX 24607580 24607876 -152366264 - AluSx SINE Alu -16 296 1 4503 168 161 20 chrX 24607876 24608038 -152366102 - Charlie1 DNA MER1_type -1210 1551 1413 2212 124 0 0 chrX 24608192 24608490 -152365650 - AluSx SINE Alu -14 298 1 567 268 19 56 chrX 24608653 24608866 -152365274 - L2 LINE L2 -18 3295 3091 243 266 119 29 chrX 24608874 24608993 -152365147 - MER5A DNA MER1_type -2 187 29 253 329 13 0 chrX 24609007 24609083 -152365057 - L2 LINE L2 -238 3075 2999 615 344 17 9 chrX 24609658 24609888 -152364252 - L2 LINE L2 -338 2976 2745 1374 166 87 67 chrX 24610191 24610626 -152363514 + LTR56 LTR ERV1 1 444 -1 415 297 143 11 chrX 24610673 24610848 -152363292 + MIR SINE MIR 58 255 -7 1500 167 52 7 chrX 24611571 24611841 -152362299 + AluJo SINE Alu 9 290 -22 234 256 23 35 chrX 24611966 24612052 -152362088 + MIR SINE MIR 172 256 -6 586 228 10 67 chrX 24612813 24612888 -152361252 + L1ME3 LINE L1 5455 5533 -637 2370 78 3 13 chrX 24612888 24613196 -152360944 - AluY SINE Alu -6 305 1 586 228 10 67 chrX 24613196 24613313 -152360827 + L1ME3 LINE L1 5533 5636 -534 267 255 59 0 chrX 24613311 24613413 -152360727 + L1ME3 LINE L1 6053 6160 -2 * 1765 180 13 45 chrX 24613945 24614322 -152359818 - MLT1A1 LTR MaLR 0 365 1 522 250 58 19 chrX 24614552 24614945 -152359195 + LTR16B LTR ERVL 8 459 -5 298 257 0 0 chrX 24614977 24615051 -152359089 + HERV16 LTR ERVL 105 178 -4818 3477 348 42 10 chrX 24615065 24617381 -152356759 + HERV16 LTR ERVL 2867 5250 -235 307 319 7 7 chrX 24617403 24617538 -152356602 + HERV16 LTR ERVL 4856 4990 -6 956 259 79 61 chrX 24617542 24617998 -152356142 + LTR16B LTR ERVL 1 464 0 24 0 0 0 chrX 24618927 24618951 -152355189 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 24620009 24620040 -152354100 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chrX 24620279 24620309 -152353831 + AT_rich Low_complexity Low_complexity 1 30 0 404 283 0 0 chrX 24620606 24620712 -152353428 + MER5C DNA MER1_type 13 118 -206 319 183 0 61 chrX 24620855 24620937 -152353203 + MER5C DNA MER1_type 248 324 0 1129 197 22 18 chrX 24620945 24621168 -152352972 + MER58A DNA MER1_type 1 224 0 2544 42 3 6 chrX 24621190 24621502 -152352638 - AluY SINE Alu 0 311 1 560 269 41 12 chrX 24621520 24621762 -152352378 + MER112 DNA MER1_type 12 260 0 27 29 0 0 chrX 24621786 24621820 -152352320 + AT_rich Low_complexity Low_complexity 1 34 0 915 209 25 10 chrX 24622389 24622590 -152351550 + MER63A DNA MER1_type 1 204 -6 3038 197 7 68 chrX 24622690 24623013 -152351127 + MER82 DNA MER2_type 2 262 -391 2437 80 0 3 chrX 24623013 24623325 -152350815 + AluY SINE Alu 1 311 0 3038 197 7 68 chrX 24623325 24623695 -152350445 + MER82 DNA MER2_type 262 653 0 3318 106 23 4 chrX 24623728 24624240 -152349900 - L1MA4 LINE L1 -6 6294 5773 5168 129 10 23 chrX 24624249 24625269 -152348871 - L1PA16 LINE L1 -10 6156 5130 2119 97 30 17 chrX 24625269 24625567 -152348573 - AluSq SINE Alu -11 302 1 5168 129 10 23 chrX 24625567 24626202 -152347938 - L1PA16 LINE L1 -1036 5130 4488 7062 150 15 19 chrX 24626245 24627037 -152347103 - L1MA4 LINE L1 -516 5784 4990 1528 146 100 43 chrX 24627037 24627317 -152346823 - AluJo SINE Alu -16 296 1 7062 150 15 19 chrX 24627317 24628359 -152345781 - L1MA4 LINE L1 -1310 4990 3954 1251 243 39 99 chrX 24628865 24629379 -152344761 + LTR33 LTR ERVL 36 518 -3 1167 270 108 35 chrX 24629488 24630541 -152343599 - L1MC5 LINE L1 -859 7102 5860 306 0 0 0 chrX 24630541 24630575 -152343565 + (TG)n Simple_repeat Simple_repeat 2 35 0 1167 270 108 35 chrX 24630575 24631140 -152343000 - L1MC5 LINE L1 -2101 5860 5338 658 329 36 47 chrX 24631190 24631683 -152342457 - LTR16C LTR ERVL 0 491 4 331 217 0 0 chrX 24632508 24632568 -152341572 - MER81 DNA DNA -2 112 53 530 137 59 39 chrX 24632692 24632794 -152341346 - MER5A DNA MER1_type -77 112 9 2301 95 0 0 chrX 24632882 24633176 -152340964 - AluSx SINE Alu -5 307 14 411 75 0 0 chrX 24633246 24633299 -152340841 - Alu SINE Alu -257 53 1 204 182 0 0 chrX 24634195 24634239 -152339901 + (TA)n Simple_repeat Simple_repeat 1 44 0 29 0 0 0 chrX 24634295 24634324 -152339816 + AT_rich Low_complexity Low_complexity 1 29 0 1470 203 57 21 chrX 24634731 24635145 -152338995 - L1ME1 LINE L1 -8 6158 5736 21 36 0 0 chrX 24635304 24635332 -152338808 + AT_rich Low_complexity Low_complexity 1 28 0 596 174 35 0 chrX 24636415 24636530 -152337610 - MER94 DNA DNA -14 120 2 2356 84 0 19 chrX 24636629 24636938 -152337202 - AluSq SINE Alu -10 303 1 642 273 28 17 chrX 24637009 24637185 -152336955 + MER5B DNA MER1_type 1 178 0 574 296 80 11 chrX 24639419 24639881 -152334259 + L1MEc LINE L1 1257 1750 -4646 598 228 120 46 chrX 24640033 24640274 -152333866 - LTR50 LTR ERVL -150 645 387 2575 161 9 0 chrX 24640421 24640849 -152333291 - MSTB1 LTR MaLR 0 432 1 6256 210 16 6 chrX 24640849 24642110 -152332030 - MSTB1-int LTR MaLR 0 1651 375 1022 47 0 0 chrX 24642110 24642239 -152331901 + L1PA4 LINE L1 6024 6152 -3 477 214 9 0 chrX 24642324 24642436 -152331704 - MER58A DNA MER1_type -17 207 95 234 216 0 0 chrX 24642468 24642519 -152331621 - MER58A DNA MER1_type -9 98 48 2058 174 3 0 chrX 24642529 24642902 -152331238 - MSTB1-int LTR MaLR -1277 374 1 309 115 0 19 chrX 24642902 24642954 -152331186 - MLT2B3 LTR ERVL 0 520 470 1714 183 25 109 chrX 24642991 24643562 -152330578 - MLT2B3 LTR ERVL -40 508 1 589 159 127 0 chrX 24643564 24643690 -152330450 - LTR50 LTR ERVL -649 146 5 419 332 220 15 chrX 24644799 24645744 -152328396 + L2 LINE L2 1623 2761 -553 657 289 68 25 chrX 24646606 24646841 -152327299 - MIR SINE MIR -15 247 3 1405 258 143 15 chrX 24646867 24647328 -152326812 + MLT1E LTR MaLR 11 530 -63 22 35 0 0 chrX 24647328 24647357 -152326783 + AT_rich Low_complexity Low_complexity 1 29 0 1500 126 142 0 chrX 24647381 24647627 -152326513 - AluSx SINE Alu -27 285 5 543 252 9 0 chrX 24648434 24648545 -152325595 - MER81 DNA DNA -2 112 1 233 255 0 0 chrX 24648967 24649014 -152325126 - L3 LINE CR1 -13 1564 1518 402 213 37 19 chrX 24649117 24649225 -152324915 + MER103 DNA DNA 3 112 -54 279 213 27 27 chrX 24649231 24649306 -152324834 + MER5B DNA MER1_type 21 95 -83 2086 158 10 7 chrX 24649361 24649772 -152324368 - L1MA8 LINE L1 -1316 4830 4419 * 5401 126 51 20 chrX 24649766 24650494 -152323646 + L1MA8 LINE L1 4852 5556 -735 2285 93 0 13 chrX 24650494 24650806 -152323334 + AluSc SINE Alu 1 308 -1 5401 126 51 20 chrX 24650806 24651466 -152322674 + L1MA8 LINE L1 5556 6291 0 1907 158 7 0 chrX 24651469 24651760 -152322380 + AluJb SINE Alu 1 293 -19 246 250 0 28 chrX 24651792 24651864 -152322276 + MER103 DNA DNA 91 160 -6 252 167 0 0 chrX 24651871 24651919 -152322221 + CT-rich Low_complexity Low_complexity 1 48 0 844 213 44 41 chrX 24652067 24652382 -152321758 - L1MC5 LINE L1 -35 7926 7611 229 231 15 15 chrX 24652385 24652450 -152321690 - L1M4 LINE L1 -1584 4562 4498 420 261 0 0 chrX 24652634 24652743 -152321397 - L1ME2 LINE L1 -3 6331 6061 240 224 0 0 chrX 24652745 24652794 -152321346 - L1ME2 LINE L1 -55 6109 6061 679 316 68 42 chrX 24653687 24654070 -152320070 - LTR16C LTR ERVL 0 491 99 363 334 102 39 chrX 24654367 24654699 -152319441 + L2 LINE L2 2920 3272 0 1053 223 25 0 chrX 24654829 24655071 -152319069 - MER90 LTR ERV1 0 614 367 610 316 14 5 chrX 24655099 24655317 -152318823 - MER90 LTR ERV1 -386 228 9 373 370 39 0 chrX 24655861 24655988 -152318152 - L2 LINE L2 -5 3267 3136 685 209 329 59 chrX 24656158 24656332 -152317808 - L1MC4 LINE L1 0 8042 7916 3386 85 17 0 chrX 24656332 24656805 -152317335 - L1PB1 LINE L1 0 6151 5671 685 209 329 59 chrX 24656805 24657089 -152317051 - L1MC4 LINE L1 -126 7916 7460 719 222 58 62 chrX 24658122 24658379 -152315761 - MIR SINE MIR 0 262 7 714 172 0 23 chrX 24660141 24660269 -152313871 + FLAM_A SINE Alu 3 127 -6 791 255 81 13 chrX 24660399 24660634 -152313506 - MIR SINE MIR -9 253 3 860 283 78 62 chrX 24660694 24661342 -152312798 + L2 LINE L2 2623 3267 -5 191 331 206 25 chrX 24661391 24661551 -152312589 - L2 LINE L2 -218 3054 2866 279 0 0 0 chrX 24662026 24662057 -152312083 + (CA)n Simple_repeat Simple_repeat 2 32 0 436 194 42 0 chrX 24664732 24664897 -152309243 + (GGGTG)n Simple_repeat Simple_repeat 3 174 0 4845 162 19 10 chrX 24665064 24666755 -152307385 - L1PB4 LINE L1 -3 6153 4450 488 192 100 0 chrX 24666978 24667098 -152307042 - MER94 DNA DNA -2 132 1 502 342 86 5 chrX 24668420 24668642 -152305498 + MIR SINE MIR 14 253 -9 656 286 57 79 chrX 24669132 24669590 -152304550 - LTR16A1 LTR ERVL -2 455 8 619 191 17 0 chrX 24670386 24670501 -152303639 + MER20 DNA MER1_type 1 117 -102 272 65 0 87 chrX 24670725 24670771 -152303369 + MER20 DNA MER1_type 178 219 0 1691 208 76 48 chrX 24670781 24671256 -152302884 - LTR16C LTR ERVL 0 491 4 484 296 13 19 chrX 24671416 24671575 -152302565 - L3 LINE CR1 -21 1556 1399 812 276 46 14 chrX 24671589 24671806 -152302334 + MIR SINE MIR 35 258 -4 317 287 0 50 chrX 24672648 24672749 -152301391 + L1MC4 LINE L1 6608 6703 -1339 * 354 253 23 0 chrX 24672672 24672759 -152301381 - L1MC4 LINE L1 -1340 6702 6614 192 40 0 0 chrX 24672761 24672786 -152301354 + (TG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chrX 24673801 24673823 -152300317 + AT_rich Low_complexity Low_complexity 1 22 0 626 290 0 6 chrX 24674546 24674715 -152299425 + LTR16A LTR ERVL 13 180 -270 1067 241 38 73 chrX 24674749 24675144 -152298996 + L2 LINE L2 2933 3313 0 206 250 0 23 chrX 24675238 24675282 -152298858 + MIR SINE MIR 7 49 -213 944 223 67 5 chrX 24675298 24675522 -152298618 - MIR SINE MIR -10 252 15 420 344 88 18 chrX 24675466 24675693 -152298447 + MIR SINE MIR 19 261 -1 * 1325 253 8 83 chrX 24676122 24676333 -152297807 + LTR16A LTR ERVL 16 241 -209 6129 78 24 20 chrX 24676333 24677193 -152296947 + L1PB1 LINE L1 4912 5768 -383 405 0 0 0 chrX 24677193 24677238 -152296902 + (TA)n Simple_repeat Simple_repeat 2 46 0 6129 78 24 20 chrX 24677238 24677483 -152296657 + L1PB1 LINE L1 5768 6023 -128 2138 93 41 3 chrX 24677483 24677773 -152296367 + AluSx SINE Alu 1 301 -11 6129 78 24 20 chrX 24677773 24677902 -152296238 + L1PB1 LINE L1 6023 6150 -1 1325 253 8 83 chrX 24677902 24678160 -152295980 + LTR16A LTR ERVL 241 450 0 2105 100 0 28 chrX 24678857 24679190 -152294950 + AluSx SINE Alu 1 325 0 440 207 118 37 chrX 24680074 24680209 -152293931 + MER5A DNA MER1_type 43 188 -1 1358 188 49 36 chrX 24680442 24680771 -152293369 + LTR16A1 LTR ERVL 68 400 -57 3617 143 60 23 chrX 24680771 24681051 -152293089 + L1MA9 LINE L1 5494 5762 -550 390 21 0 0 chrX 24681051 24681098 -152293042 + (CA)n Simple_repeat Simple_repeat 2 48 0 3617 143 60 23 chrX 24681098 24681552 -152292588 + L1MA9 LINE L1 5762 6255 -57 416 345 42 45 chrX 24681631 24681918 -152292222 + L1MDa LINE L1 2 287 -6253 3848 208 77 58 chrX 24682511 24682829 -152291311 + L1MDa LINE L1 909 1220 -5320 1175 83 6 0 chrX 24682829 24682997 -152291143 + L1MA3 LINE L1 6132 6300 -5 3848 208 77 58 chrX 24682997 24684519 -152289621 + L1MDa LINE L1 1220 2733 -3807 278 257 69 50 chrX 24684871 24684972 -152289168 + MIR SINE MIR 146 248 -14 276 286 143 0 chrX 24686634 24686767 -152287373 + MER117 DNA MER1_type 46 197 0 5983 101 26 1 chrX 24688370 24689393 -152284747 + L1PA15 LINE L1 5120 6164 -1 1195 230 28 62 chrX 24690000 24690144 -152283996 + LTR16C LTR ERVL 146 293 -198 1117 196 48 104 chrX 24690144 24690501 -152283639 - MER58B DNA MER1_type -4 337 1 1195 230 28 62 chrX 24690501 24690581 -152283559 + LTR16C LTR ERVL 293 374 -117 2162 151 0 0 chrX 24690581 24690892 -152283248 - AluJb SINE Alu -1 311 1 1195 230 28 62 chrX 24690892 24691022 -152283118 + LTR16C LTR ERVL 374 489 -2 7190 105 39 8 chrX 24691132 24692303 -152281837 - Tigger3b DNA MER2_type 0 1231 24 249 33 0 0 chrX 24694071 24694101 -152280039 + (CA)n Simple_repeat Simple_repeat 2 31 0 268 255 98 36 chrX 24695001 24695139 -152279001 + L1ME LINE L1 5669 5818 -303 367 202 36 12 chrX 24696151 24696235 -152277905 - MIR3 SINE MIR -1 207 122 1347 153 37 29 chrX 24696252 24696494 -152277646 + AluJo SINE Alu 46 289 -23 2122 136 3 3 chrX 24696527 24696837 -152277303 - AluSx SINE Alu -2 310 1 22 0 0 0 chrX 24696837 24696859 -152277281 + AT_rich Low_complexity Low_complexity 1 22 0 2625 94 3 0 chrX 24696892 24697244 -152276896 - THE1A LTR MaLR -2 353 1 2189 104 0 57 chrX 24697830 24698146 -152275994 - AluSx SINE Alu -14 298 1 477 47 0 0 chrX 24698436 24698500 -152275640 + (TG)n Simple_repeat Simple_repeat 1 64 0 2058 186 104 90 chrX 24699037 24699691 -152274449 - MLT2F LTR ERVL 0 663 1 1629 254 90 35 chrX 24699896 24700460 -152273680 + MLT1G1 LTR MaLR 1 595 0 6951 26 0 0 chrX 24700614 24701460 -152272680 - L1PA3 LINE L1 -2 6153 5308 3735 43 0 0 chrX 24701461 24701946 -152272194 + L1PA3 LINE L1 4802 5286 -860 1546 154 42 14 chrX 24701946 24702232 -152271908 - L1MD2 LINE L1 0 6359 6066 703 165 35 0 chrX 24702232 24702347 -152271793 + FLAM_C SINE Alu 3 121 -22 2442 176 51 41 chrX 24702372 24702936 -152271204 - L1MD1 LINE L1 -165 6077 5508 444 244 17 17 chrX 24703600 24703719 -152270421 - Charlie8 DNA MER1_type -2156 261 143 1136 232 73 6 chrX 24703993 24704320 -152269820 + L1ME2 LINE L1 5305 5653 -509 1655 109 10 58 chrX 24704571 24704865 -152269275 - L1PA13 LINE L1 -3 6160 5881 5771 63 6 4 chrX 24704887 24705676 -152268464 - L1PB1 LINE L1 0 6151 5361 421 171 0 0 chrX 24705676 24705764 -152268376 + L1P LINE L1 5218 5305 -841 * 1796 174 73 59 chrX 24705759 24706077 -152268063 + L1ME2 LINE L1 5625 5954 -210 1706 171 39 0 chrX 24706077 24706197 -152267943 + AluJb SINE Alu 1 115 -197 351 0 0 0 chrX 24706197 24706236 -152267904 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1706 171 39 0 chrX 24706236 24706395 -152267745 + AluJb SINE Alu 115 291 -21 1796 174 73 59 chrX 24706395 24706598 -152267542 + L1ME2 LINE L1 5954 6153 -11 529 309 100 22 chrX 24706843 24707073 -152267067 + MIR SINE MIR 2 249 -13 2255 52 6 0 chrX 24707566 24708040 -152266100 - L1PA5 LINE L1 -597 5557 5081 5084 38 2 0 chrX 24708040 24708645 -152265495 + L1PA5 LINE L1 5547 6153 -1 25 31 0 0 chrX 24709229 24709261 -152264879 + AT_rich Low_complexity Low_complexity 1 32 0 30 59 0 0 chrX 24709478 24709529 -152264611 + AT_rich Low_complexity Low_complexity 1 51 0 258 56 0 0 chrX 24709649 24709685 -152264455 + (TG)n Simple_repeat Simple_repeat 1 36 0 744 31 0 20 chrX 24710380 24710478 -152263662 + L1PA8 LINE L1 6073 6168 -4 215 279 0 0 chrX 24711288 24711349 -152262791 + (CAT)n Simple_repeat Simple_repeat 3 63 0 246 62 0 0 chrX 24712192 24712224 -152261916 + (A)n Simple_repeat Simple_repeat 1 32 0 372 22 0 0 chrX 24713153 24713198 -152260942 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 10724 34 0 0 chrX 24713987 24715343 -152258797 - L1PA3 LINE L1 -1711 4435 3080 8099 23 0 0 chrX 24715343 24717059 -152257081 + L1PA3 LINE L1 4434 6148 -7 431 202 18 2 chrX 24717171 24717334 -152256806 + MER58A DNA MER1_type 25 223 -1 1171 189 23 14 chrX 24717402 24717619 -152256521 - MER20 DNA MER1_type 0 219 1 282 320 20 0 chrX 24719393 24719493 -152254647 - LTR67 LTR ERVL -368 189 88 * 1370 193 34 14 chrX 24719489 24719785 -152254355 - MLT2B3 LTR ERVL -252 302 1 812 283 94 54 chrX 24719786 24720002 -152254138 - MLT1G1 LTR MaLR -25 570 364 1373 204 136 5 chrX 24720002 24720414 -152253726 + MER110A LTR ERV1 3 468 0 812 283 94 54 chrX 24720414 24720703 -152253437 - MLT1G1 LTR MaLR -231 364 1 867 107 14 158 chrX 24720712 24720927 -152253213 - MER6 DNA MER2_type -9 856 673 1242 51 6 0 chrX 24720929 24721087 -152253053 + L1PA6 LINE L1 5987 6145 -9 2438 90 3 0 chrX 24721318 24721630 -152252510 - AluSp SINE Alu 0 313 1 226 187 93 67 chrX 24721775 24721850 -152252290 - L2 LINE L2 -8 3264 3188 907 287 46 51 chrX 24723390 24723547 -152250593 - L1MC4a LINE L1 -1871 5937 5781 2250 89 3 52 chrX 24723547 24723872 -152250268 - AluSg SINE Alu -1 309 1 907 287 46 51 chrX 24723872 24724149 -152249991 - L1MC4a LINE L1 -2027 5781 5505 1140 120 66 46 chrX 24725096 24725188 -152248952 + L1MB3 LINE L1 5938 6027 -156 2009 114 3 31 chrX 24725188 24725501 -152248639 - AluSg SINE Alu 0 305 1 1140 120 66 46 chrX 24725501 24725648 -152248492 + L1MB3 LINE L1 6027 6183 0 362 284 53 11 chrX 24725711 24725806 -152248334 - MIR SINE MIR -110 152 54 397 250 9 56 chrX 24725876 24725984 -152248156 + MIR3 SINE MIR 71 173 -35 263 177 81 0 chrX 24725984 24726046 -152248094 + MER112 DNA MER1_type 13 79 -181 246 62 0 0 chrX 24726046 24726078 -152248062 + (CCA)n Simple_repeat Simple_repeat 1 32 0 917 285 25 28 chrX 24726086 24726409 -152247731 - LTR16A1 LTR ERVL 0 457 136 632 221 0 22 chrX 24726417 24726553 -152247587 + MLT1F1 LTR MaLR 1 133 -409 1781 220 47 22 chrX 24726590 24727035 -152247105 + MLT1F1 LTR MaLR 110 565 -2 304 241 177 0 chrX 24727203 24727344 -152246796 + MER112 DNA MER1_type 90 255 -5 513 223 84 8 chrX 24727411 24727591 -152246549 - MIR SINE MIR 0 262 26 351 0 0 0 chrX 24728977 24729016 -152245124 + (TG)n Simple_repeat Simple_repeat 2 40 0 5224 126 12 1 chrX 24729081 24730518 -152243622 - L1MA3 LINE L1 -270 6035 4585 1840 108 7 3 chrX 24730682 24730978 -152243162 + HERVH LTR ERV1 7417 7713 0 1576 101 45 10 chrX 24730978 24731329 -152242811 + LTR7 LTR ERV1 1 412 -38 1753 234 87 24 chrX 24731389 24731894 -152242246 - MLT1H LTR MaLR 0 549 13 302 221 46 119 chrX 24732144 24732300 -152241840 - LTR33A LTR ERVL -372 151 38 26 0 0 0 chrX 24732833 24732859 -152241281 + AT_rich Low_complexity Low_complexity 1 26 0 620 228 76 6 chrX 24733127 24733285 -152240855 + L2 LINE L2 3145 3313 0 317 241 73 29 chrX 24733299 24733436 -152240704 - L1MC/D LINE L1 -2053 5755 5613 458 224 39 6 chrX 24734248 24734404 -152239736 - L1ME4a LINE L1 -1 6120 5960 488 282 68 18 chrX 24734693 24734856 -152239284 + MER5B DNA MER1_type 1 171 -7 337 344 9 23 chrX 24734869 24735084 -152239056 + L2 LINE L2 2546 2757 -557 2610 130 16 37 chrX 24735178 24735615 -152238525 - MSTC LTR MaLR 0 428 1 1134 285 84 33 chrX 24735822 24736298 -152237842 - L2 LINE L2 0 3313 2798 2220 122 0 0 chrX 24736298 24736593 -152237547 - AluSx SINE Alu -17 295 1 1134 285 84 33 chrX 24736593 24736796 -152237344 - L2 LINE L2 -515 2798 2607 218 324 106 28 chrX 24736847 24737026 -152237114 + L2 LINE L2 2758 2950 -364 1865 189 51 35 chrX 24737051 24737505 -152236635 - L1MB5 LINE L1 -15 6159 5699 1856 151 28 100 chrX 24737575 24738073 -152236067 - MLT1C LTR MaLR -5 462 1 284 289 8 58 chrX 24738077 24738198 -152235942 - MER5A DNA MER1_type -53 136 22 615 219 0 0 chrX 24738199 24738313 -152235827 - MER81 DNA DNA 0 114 1 451 288 59 12 chrX 24738793 24738963 -152235177 + MER5B DNA MER1_type 1 178 0 3248 143 28 5 chrX 24739383 24739963 -152234177 - L1MB7 LINE L1 -16 6168 5576 231 133 0 0 chrX 24740547 24740592 -152233548 + (CCTCG)n Simple_repeat Simple_repeat 5 49 0 255 31 0 0 chrX 24740762 24740794 -152233346 + (CCCCG)n Simple_repeat Simple_repeat 1 32 0 230 0 0 32 chrX 24740817 24740848 -152233292 + (CCG)n Simple_repeat Simple_repeat 1 30 0 306 73 0 0 chrX 24741870 24741911 -152232229 + (GGA)n Simple_repeat Simple_repeat 1 41 0 409 179 0 12 chrX 24743207 24743291 -152230849 - L1MB8 LINE L1 -1 6177 6095 3569 178 40 32 chrX 24743335 24744371 -152229769 - L1MB8 LINE L1 -75 6103 5058 312 214 54 0 chrX 24744430 24744486 -152229654 + L2 LINE L2 3246 3304 -9 2228 79 0 4 chrX 24744535 24744841 -152229299 - AluSc SINE Alu 0 305 1 1034 171 26 0 chrX 24745134 24745327 -152228813 + MER20 DNA MER1_type 3 200 -19 216 67 0 0 chrX 24745748 24745778 -152228362 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 23 33 0 0 chrX 24746000 24746030 -152228110 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrX 24746388 24746417 -152227723 + AT_rich Low_complexity Low_complexity 1 29 0 2718 97 6 0 chrX 24746509 24746871 -152227269 - THE1B LTR MaLR 0 364 1 4297 238 118 37 chrX 24746987 24749139 -152225001 - HAL1 LINE L1 -139 2368 1 591 58 0 23 chrX 24750299 24750386 -152223754 - L1PB4 LINE L1 -4 6152 6068 491 262 58 23 chrX 24750570 24750742 -152223398 - MER5B DNA MER1_type 0 178 1 342 310 35 28 chrX 24750951 24751093 -152223047 - MER5A DNA MER1_type -18 171 29 429 253 95 32 chrX 24752222 24752380 -152221760 + MIR SINE MIR 24 191 -71 200 274 0 0 chrX 24752463 24752514 -152221626 + L2 LINE L2 3263 3313 0 3550 161 38 1 chrX 24752738 24753404 -152220736 - L1MC3 LINE L1 -1 7784 7095 488 365 67 6 chrX 24753594 24753959 -152220181 + L1M4 LINE L1 4184 4570 -1576 2629 209 48 22 chrX 24754125 24754703 -152219437 + MLT1E LTR MaLR 1 593 0 225 316 102 0 chrX 24754710 24754954 -152219186 + L1M4 LINE L1 4758 5026 -1120 24 67 0 0 chrX 24755030 24755075 -152219065 + AT_rich Low_complexity Low_complexity 1 45 0 235 145 53 105 chrX 24755208 24755284 -152218856 - MER5C DNA MER1_type -252 72 1 1084 177 70 33 chrX 24755293 24755508 -152218632 - MER58A DNA MER1_type -1 223 1 842 126 116 5 chrX 24755662 24755852 -152218288 + MER33 DNA MER1_type 43 253 -71 215 381 37 0 chrX 24756408 24756542 -152217598 - L2 LINE L2 -846 2468 2330 2787 15 15 0 chrX 24756812 24757136 -152217004 + L1PA4 LINE L1 5827 6155 0 347 269 8 0 chrX 24758135 24758265 -152215875 + (TA)n Simple_repeat Simple_repeat 1 131 0 2096 92 35 21 chrX 24758611 24758895 -152215245 + AluSx SINE Alu 1 288 -24 1088 161 150 0 chrX 24759392 24759585 -152214555 + MER58A DNA MER1_type 2 223 -1 411 298 46 0 chrX 24759954 24760085 -152214055 - MIR SINE MIR -15 247 111 2658 63 22 17 chrX 24760554 24760916 -152213224 - THE1B LTR MaLR 0 364 1 211 367 25 0 chrX 24762535 24762614 -152211526 + L2 LINE L2 2971 3051 -221 481 254 202 48 chrX 24762752 24763024 -152211116 - L2 LINE L2 -3 3310 2997 2489 90 0 0 chrX 24763255 24763565 -152210575 - AluY SINE Alu 0 311 2 302 278 38 60 chrX 24763968 24764101 -152210039 - L1ME3A LINE L1 -36 6134 6005 679 240 173 8 chrX 24764241 24764716 -152209424 - L1ME3A LINE L1 -217 5947 5359 32 106 0 0 chrX 24764794 24764917 -152209223 + AT_rich Low_complexity Low_complexity 1 123 0 1845 173 62 37 chrX 24764926 24765352 -152208788 + MSTB1 LTR MaLR 1 375 0 1169 178 0 23 chrX 24766316 24766535 -152207605 + MER20 DNA MER1_type 6 219 0 435 214 0 0 chrX 24766694 24766778 -152207362 - L1ME1 LINE L1 -22 6213 6130 385 283 148 12 chrX 24768529 24768861 -152205279 - L1ME1 LINE L1 -195 5995 5619 258 224 79 0 chrX 24769343 24769419 -152204721 - L1ME1 LINE L1 -2316 3899 3818 1192 171 43 14 chrX 24769423 24769634 -152204506 - AluJo SINE Alu -12 300 84 3971 241 51 57 chrX 24769637 24771177 -152202963 - L1ME1 LINE L1 -2391 3824 2276 2296 120 120 5 chrX 24771177 24771560 -152202580 - MSTA LTR MaLR 0 428 2 3971 241 51 57 chrX 24771560 24772037 -152202103 - L1ME1 LINE L1 -3939 2276 1797 313 62 0 0 chrX 24772037 24772085 -152202055 - L1MA3 LINE L1 0 6305 6258 3971 241 51 57 chrX 24772085 24772673 -152201467 - L1ME1 LINE L1 -4418 1797 1256 2292 168 70 131 chrX 24772662 24772815 -152201325 - L1MC4a LINE L1 -1077 6731 6570 * 1736 197 49 21 chrX 24772815 24773200 -152200940 + MSTD LTR MaLR 1 396 0 2292 168 70 131 chrX 24773200 24773483 -152200657 - L1MC4a LINE L1 -1238 6570 6271 218 56 28 0 chrX 24773483 24773519 -152200621 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2292 168 70 131 chrX 24773519 24773990 -152200150 - L1MC4a LINE L1 -1537 6271 5878 534 203 6 80 chrX 24774037 24774200 -152199940 - L1MA9 LINE L1 -29 6283 6133 * 1013 228 39 17 chrX 24774197 24774506 -152199634 - L1MC4a LINE L1 -356 5818 5586 526 207 170 7 chrX 24775928 24776063 -152198077 + MER5A DNA MER1_type 32 188 -1 3259 207 5 15 chrX 24776402 24777060 -152197080 - MER82 DNA MER2_type -1 652 2 186 357 71 0 chrX 24777856 24777926 -152196214 + L2 LINE L2 3142 3216 -56 294 253 13 0 chrX 24778315 24778390 -152195750 + L1ME LINE L1 5785 5860 -310 456 253 106 46 chrX 24780997 24781357 -152192783 - MLT1H LTR MaLR -8 541 96 421 251 100 80 chrX 24781645 24781932 -152192208 + L1M4 LINE L1 5111 5427 -694 520 279 66 0 chrX 24781985 24782168 -152191972 - L2 LINE L2 -198 3115 2921 3652 159 68 9 chrX 24782280 24783090 -152191050 + L1MB7 LINE L1 5182 6037 -147 218 140 35 0 chrX 24783127 24783184 -152190956 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 6586 16 4 0 chrX 24783188 24783977 -152190163 - L1PA3 LINE L1 -3 6152 5361 13134 22 0 0 chrX 24783978 24785592 -152188548 + L1PA3 LINE L1 3745 5358 -788 662 272 23 0 chrX 24786766 24786939 -152187201 - MER5A DNA MER1_type -1 188 12 459 67 17 0 chrX 24787529 24787589 -152186551 + U7 snRNA snRNA 2 62 -1 26 0 0 0 chrX 24787595 24787621 -152186519 + AT_rich Low_complexity Low_complexity 1 26 0 31 68 0 0 chrX 24787898 24787957 -152186183 + AT_rich Low_complexity Low_complexity 1 59 0 355 285 218 14 chrX 24788026 24788457 -152185683 - L1ME4a LINE L1 -82 6039 5521 384 178 0 0 chrX 24788899 24788972 -152185168 + (TA)n Simple_repeat Simple_repeat 2 74 0 959 249 41 16 chrX 24789431 24789676 -152184464 - MIR SINE MIR -10 252 2 871 182 36 0 chrX 24789788 24789953 -152184187 + MER5B DNA MER1_type 7 177 -1 231 273 40 30 chrX 24791143 24791242 -152182898 - L1ME3A LINE L1 -106 6064 5965 3418 230 139 28 chrX 24791814 24793503 -152180637 - HAL1 LINE L1 -629 1878 3 402 296 216 5 chrX 24793578 24793777 -152180363 - MIR SINE MIR -12 250 10 22 0 0 0 chrX 24795020 24795042 -152179098 + AT_rich Low_complexity Low_complexity 1 22 0 405 237 149 9 chrX 24795226 24795356 -152178784 + MIR SINE MIR 3 150 -62 1129 195 43 17 chrX 24795460 24795691 -152178449 - MIR SINE MIR -17 245 9 1512 36 31 5 chrX 24795777 24795969 -152178171 + MER107 DNA MER1_type 1 197 0 711 184 163 11 chrX 24796290 24796480 -152177660 - MER58A DNA MER1_type 0 224 6 1098 184 134 25 chrX 24796533 24796898 -152177242 - LTR37A LTR ERV1 0 426 22 260 371 0 9 chrX 24796905 24797021 -152177119 - MER5A DNA MER1_type -74 115 1 422 210 74 0 chrX 24800180 24800261 -152173879 + L2 LINE L2 3169 3255 -17 1257 197 58 52 chrX 24801592 24801901 -152172239 + AluJo SINE Alu 1 311 -1 864 265 168 20 chrX 24802682 24802909 -152171231 + L2 LINE L2 1976 2168 -1146 473 96 12 48 chrX 24802909 24802992 -152171148 - MADE1 DNA Mariner 0 80 1 864 265 168 20 chrX 24802992 24803115 -152171025 + L2 LINE L2 2168 2378 -936 937 179 18 12 chrX 24804069 24804237 -152169903 - MER5B DNA MER1_type -2 176 8 198 337 12 12 chrX 24804530 24804613 -152169527 - MIR SINE MIR -166 96 14 839 206 69 0 chrX 24804613 24804802 -152169338 + MLT1J2 LTR MaLR 1 202 -248 314 326 159 25 chrX 24804972 24805325 -152168815 - L2 LINE L2 -1697 1617 1218 344 301 43 0 chrX 24805331 24805424 -152168716 + L2 LINE L2 3172 3268 -4 * 687 301 149 41 chrX 24805409 24805967 -152168173 - L2 LINE L2 -2380 934 317 275 302 64 62 chrX 24806211 24806507 -152167633 - MLT1H LTR MaLR -209 340 8 226 219 167 10 chrX 24806697 24806793 -152167347 + MIR SINE MIR 102 212 -50 222 105 0 0 chrX 24807650 24807688 -152166452 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 593 175 43 13 chrX 24808331 24808547 -152165593 - MER33 DNA MER1_type 0 324 23 1275 198 206 11 chrX 24810684 24811048 -152163092 - MER101 LTR ERV1 -32 442 8 398 315 159 43 chrX 24812213 24812489 -152161651 - L3 LINE CR1 -31 1546 1239 640 280 124 9 chrX 24814943 24815168 -152158972 - MIR SINE MIR -1 261 11 306 0 0 0 chrX 24815389 24815423 -152158717 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1983 109 72 7 chrX 24815975 24816268 -152157872 - AluSx SINE Alu 0 312 1 636 249 83 10 chrX 24817657 24817862 -152156278 - MER112 DNA MER1_type -40 220 1 636 246 42 37 chrX 24818485 24818676 -152155464 - MIR SINE MIR -15 247 56 229 230 106 115 chrX 24819706 24819819 -152154321 - MIR SINE MIR -123 139 28 472 255 174 19 chrX 24820198 24820410 -152153730 - MIR SINE MIR -11 251 7 215 208 222 0 chrX 24821024 24821096 -152153044 - MIR SINE MIR -91 171 84 216 329 29 57 chrX 24821660 24821800 -152152340 - L2 LINE L2 -18 3295 3160 877 242 45 18 chrX 24822016 24822239 -152151901 + MIR SINE MIR 13 241 -21 2287 68 0 31 chrX 24822868 24823192 -152150948 + AluY SINE Alu 1 315 0 640 192 8 25 chrX 24823933 24824053 -152150087 + MIR3 SINE MIR 46 163 -45 792 277 32 36 chrX 24824063 24824316 -152149824 - MIR SINE MIR -1 261 10 554 147 105 11 chrX 24824737 24824832 -152149308 + FLAM_A SINE Alu 16 119 -23 21 36 0 0 chrX 24825137 24825165 -152148975 + AT_rich Low_complexity Low_complexity 1 28 0 1014 87 0 0 chrX 24826603 24826730 -152147410 - AluSq/x SINE Alu -185 127 1 195 356 68 25 chrX 24826811 24826929 -152147211 - L2 LINE L2 -12 3301 3179 292 341 43 7 chrX 24827271 24827454 -152146686 + MIR SINE MIR 1 190 -63 251 282 118 27 chrX 24827643 24827753 -152146387 - L1ME2 LINE L1 -99 6065 5946 1736 158 4 11 chrX 24827787 24828065 -152146075 - AluJo SINE Alu -36 276 1 1175 126 18 0 chrX 24828084 24828251 -152145889 + AluSp SINE Alu 134 303 -10 28 61 0 0 chrX 24828323 24828372 -152145768 + AT_rich Low_complexity Low_complexity 1 49 0 213 39 0 0 chrX 24830361 24830387 -152143753 + (TA)n Simple_repeat Simple_repeat 1 26 0 2346 68 0 10 chrX 24830497 24830789 -152143351 + AluY SINE Alu 1 289 -22 215 324 29 20 chrX 24830861 24830963 -152143177 - L2 LINE L2 -218 3054 2952 521 170 11 11 chrX 24831747 24831841 -152142299 - L3 LINE CR1 -148 1429 1336 359 277 13 50 chrX 24832334 24832493 -152141647 + MIR SINE MIR 2 154 -108 1259 8 0 0 chrX 24833084 24833218 -152140922 - L1PA5 LINE L1 -5 6149 6016 286 221 12 58 chrX 24833502 24833588 -152140552 + MIR SINE MIR 164 245 -17 974 247 206 12 chrX 24833959 24834587 -152139553 - L2 LINE L2 0 3313 2551 194 320 117 0 chrX 24836927 24837030 -152137110 - MIR3 SINE MIR -3 205 91 1932 148 3 10 chrX 24837502 24837793 -152136347 - AluJo SINE Alu -23 289 1 375 89 0 0 chrX 24838312 24838368 -152135772 + (CA)n Simple_repeat Simple_repeat 1 56 0 627 299 0 17 chrX 24838787 24838961 -152135179 - MIR3 SINE MIR -15 193 23 864 160 0 8 chrX 24838978 24839109 -152135031 - FLAM_A SINE Alu -3 130 1 2325 107 0 19 chrX 24839128 24839446 -152134694 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 24839581 24839609 -152134531 + AT_rich Low_complexity Low_complexity 1 28 0 180 297 99 27 chrX 24842124 24842235 -152131905 - MIR3 SINE MIR -3 205 87 3736 71 31 2 chrX 24842349 24842466 -152131674 + L1PB1 LINE L1 5660 5772 -379 399 21 0 0 chrX 24842466 24842514 -152131626 + (CA)n Simple_repeat Simple_repeat 2 49 0 3736 71 31 2 chrX 24842514 24842873 -152131267 + L1PB1 LINE L1 5772 6150 -1 237 275 116 0 chrX 24843580 24843649 -152130491 - L2 LINE L2 -22 3250 3174 2485 74 0 6 chrX 24845903 24846214 -152127926 - AluY SINE Alu -2 309 1 24 32 0 0 chrX 24846696 24846727 -152127413 + AT_rich Low_complexity Low_complexity 1 31 0 426 239 34 62 chrX 24847138 24847314 -152126826 + MER5B DNA MER1_type 4 174 -4 247 317 65 41 chrX 24847438 24847561 -152126579 + MIR3 SINE MIR 74 199 -9 2473 139 76 9 chrX 24847820 24848266 -152125874 - L1MA6 LINE L1 -345 5955 5480 1894 116 51 14 chrX 24848266 24848557 -152125583 + L1MA6 LINE L1 5996 6298 -2 324 299 120 22 chrX 24848587 24848771 -152125369 - MIR SINE MIR -30 232 31 552 324 43 51 chrX 24849896 24850248 -152123892 + L3 LINE CR1 1071 1419 -158 1599 171 7 24 chrX 24851075 24851362 -152122778 + AluJb SINE Alu 1 282 -30 31 0 0 0 chrX 24851623 24851654 -152122486 + AT_rich Low_complexity Low_complexity 1 31 0 2088 130 0 16 chrX 24852679 24852987 -152121153 - AluSx SINE Alu -9 303 1 357 207 86 26 chrX 24854263 24854379 -152119761 - L1MC4 LINE L1 -2 8040 7918 1202 151 11 0 chrX 24854384 24854563 -152119577 - MER58A DNA MER1_type -2 222 42 686 275 63 10 chrX 24856434 24856641 -152117499 + MIR SINE MIR 13 230 -32 530 255 15 90 chrX 24858136 24858336 -152115804 - MER5A DNA MER1_type -1 188 4 299 112 0 3 chrX 24858832 24859055 -152115085 + AluSx SINE Alu 1 300 0 1408 101 10 5 chrX 24859241 24859440 -152114700 + L1PA13 LINE L1 5945 6144 -19 405 0 0 0 chrX 24859854 24859899 -152114241 + (TC)n Simple_repeat Simple_repeat 2 46 0 242 209 215 25 chrX 24860194 24860357 -152113783 + L1MC5 LINE L1 7724 7917 -44 26 30 0 0 chrX 24861490 24861523 -152112617 + AT_rich Low_complexity Low_complexity 1 33 0 411 246 33 8 chrX 24861669 24861791 -152112349 - L1ME3A LINE L1 -5 6165 6041 307 309 87 8 chrX 24864519 24864645 -152109495 + MIR SINE MIR 50 185 -77 1888 139 0 0 chrX 24864652 24864911 -152109229 + AluSx SINE Alu 1 259 -53 371 206 0 0 chrX 24864922 24864985 -152109155 - MER2 DNA MER2_type -1 344 282 1338 143 0 0 chrX 24865013 24865223 -152108917 - MER2 DNA MER2_type -135 210 1 300 269 50 35 chrX 24865728 24865869 -152108271 + MER5A DNA MER1_type 24 166 -23 * 809 182 0 7 chrX 24865748 24865891 -152108249 - MER5A DNA MER1_type -35 154 13 34 0 0 0 chrX 24866825 24866859 -152107281 + AT_rich Low_complexity Low_complexity 1 34 0 2104 214 87 44 chrX 24869464 24870174 -152103966 - L1ME3 LINE L1 -1 6161 5421 534 206 94 0 chrX 24870337 24870497 -152103643 - L1ME3 LINE L1 -777 5369 5195 932 170 0 0 chrX 24870767 24870946 -152103194 + FRAM SINE Alu 1 178 0 231 276 26 0 chrX 24871144 24871220 -152102920 - MER5B DNA MER1_type -100 78 1 482 284 183 29 chrX 24871475 24872413 -152101727 - L1ME3 LINE L1 -2762 3384 2302 2114 165 59 63 chrX 24873046 24873556 -152100584 - LTR54 LTR ERV1 -2 508 1 226 291 55 55 chrX 24873759 24873869 -152100271 + L2 LINE L2 3163 3272 0 22 35 0 0 chrX 24874365 24874394 -152099746 + AT_rich Low_complexity Low_complexity 1 29 0 1359 253 113 34 chrX 24874625 24875120 -152099020 - MLT1F LTR MaLR -8 534 1 2332 106 0 6 chrX 24875245 24875557 -152098583 - AluSg SINE Alu 0 310 1 219 151 0 57 chrX 24875633 24875686 -152098454 + T-rich Low_complexity Low_complexity 6 55 0 235 269 120 65 chrX 24876011 24876119 -152098021 + L3 LINE CR1 1091 1204 -373 253 358 68 11 chrX 24876195 24876371 -152097769 + L2 LINE L2 2110 2295 -1019 3829 101 39 17 chrX 24876490 24877077 -152097063 - LTR43 LTR ERV1 0 602 3 390 240 12 146 chrX 24877105 24877276 -152096864 - L2 LINE L2 -3 3310 3163 1689 152 39 23 chrX 24877794 24877932 -152096208 - LTR23 LTR ERV1 0 467 333 1861 134 0 36 chrX 24877932 24878238 -152095902 - AluJb SINE Alu -17 295 1 1689 152 39 23 chrX 24878238 24878527 -152095613 - LTR23 LTR ERV1 -134 333 1 460 236 170 24 chrX 24878588 24878753 -152095387 + MER5A DNA MER1_type 1 189 0 477 155 23 41 chrX 24878768 24878889 -152095251 - MER5B DNA MER1_type 0 178 1 199 273 18 0 chrX 24879028 24879083 -152095057 + L3b LINE CR1 1244 1299 -284 1701 157 20 14 chrX 24879607 24879901 -152094239 + AluJb SINE Alu 1 296 -16 4792 127 20 1 chrX 24880326 24881034 -152093106 + MER72 LTR ERV1 2 722 0 1720 229 51 14 chrX 24883274 24883781 -152090359 + L1ME3 LINE L1 5634 6159 -3 2857 153 59 41 chrX 24883800 24884294 -152089846 + L1MA9 LINE L1 5469 5978 -334 1782 151 46 3 chrX 24884294 24884579 -152089561 + AluSx SINE Alu 1 297 -15 2857 153 59 41 chrX 24884579 24884712 -152089428 + L1MA9 LINE L1 5978 6107 -205 852 112 0 9 chrX 24884719 24884835 -152089305 + FLAM_C SINE Alu 9 123 -20 1207 119 5 5 chrX 24884835 24885045 -152089095 + L1MA9 LINE L1 6092 6301 -11 303 299 51 51 chrX 24885407 24885564 -152088576 + MIR3 SINE MIR 34 190 -18 297 0 0 0 chrX 24885729 24885762 -152088378 + (CA)n Simple_repeat Simple_repeat 1 33 0 3209 218 23 38 chrX 24886050 24886334 -152087806 + L1ME1 LINE L1 45 332 -6064 1558 102 27 4 chrX 24886334 24886559 -152087581 + MER30 DNA MER1_type 1 230 0 3209 218 23 38 chrX 24886559 24886911 -152087229 + L1ME1 LINE L1 332 665 -5731 1695 182 47 3 chrX 24886911 24887208 -152086932 + AluJo SINE Alu 1 310 -2 3209 218 23 38 chrX 24887208 24887485 -152086655 + L1ME1 LINE L1 665 945 -5451 965 206 0 0 chrX 24887517 24887687 -152086453 - FAM SINE Alu -5 170 1 4263 235 43 33 chrX 24887688 24888570 -152085570 + L1ME1 LINE L1 1311 2182 -4033 877 206 12 24 chrX 24888570 24888740 -152085400 + FAM SINE Alu 1 168 -7 4263 235 43 33 chrX 24888740 24889285 -152084855 + L1ME1 LINE L1 2182 2720 -3495 1795 142 3 48 chrX 24889285 24889595 -152084545 - AluJb SINE Alu -16 296 1 4263 235 43 33 chrX 24889595 24890284 -152083856 + L1ME1 LINE L1 2720 3413 -2802 1632 132 18 0 chrX 24890284 24890504 -152083636 - AluSx SINE Alu -26 286 63 4263 235 43 33 chrX 24890504 24890984 -152083156 + L1ME1 LINE L1 3413 3887 -2328 563 223 14 0 chrX 24890983 24891122 -152083018 + L1ME1 LINE L1 4168 4308 -1907 * 3063 211 61 20 chrX 24891155 24891514 -152082626 + L1ME1 LINE L1 4408 4751 -1484 2329 64 3 10 chrX 24891514 24891827 -152082313 + L1PA8 LINE L1 5860 6170 -2 3063 211 61 20 chrX 24891827 24893140 -152081000 + L1ME1 LINE L1 4751 6219 -16 902 174 11 22 chrX 24893149 24893333 -152080807 + L1MB7 LINE L1 5620 5801 -383 1688 139 21 0 chrX 24893333 24893621 -152080519 + MER47A DNA MER2_type 1 294 -72 6709 35 4 0 chrX 24893622 24894462 -152079678 - L1PA5 LINE L1 -5 6149 5307 1817 130 58 20 chrX 24894462 24894775 -152079365 - AluSx SINE Alu 0 312 1 416 232 0 0 chrX 24894775 24894857 -152079283 + MER47A DNA MER2_type 285 366 0 1612 169 57 30 chrX 24894857 24895224 -152078916 + L1MB7 LINE L1 5800 6176 -8 408 201 69 42 chrX 24895590 24895734 -152078406 - L1ME3A LINE L1 -5 6165 6018 2554 157 37 2 chrX 24895763 24896228 -152077912 - L1MB2 LINE L1 -8 6163 5683 724 228 92 48 chrX 24896249 24896499 -152077641 - MIR SINE MIR 0 262 2 246 287 327 0 chrX 24898110 24898211 -152075929 - L2 LINE L2 -5 3267 3134 239 143 0 0 chrX 24898400 24898442 -152075698 + AluSq SINE Alu 1 42 -257 5410 107 2 14 chrX 24898442 24899231 -152074909 - LTR17 LTR ERV1 0 780 1 1729 80 57 42 chrX 24899231 24899494 -152074646 + AluSq SINE Alu 39 305 -8 517 334 98 41 chrX 24899751 24900204 -152073936 - L2 LINE L2 -607 2707 2208 1627 95 0 5 chrX 24900204 24900414 -152073726 - AluSg/x SINE Alu -18 292 84 517 334 98 41 chrX 24900414 24900574 -152073566 - L2 LINE L2 -1106 2208 2059 190 301 131 78 chrX 24900652 24900987 -152073153 - L2 LINE L2 -2 3270 2918 613 294 82 45 chrX 24901655 24902080 -152072060 + L1MC/D LINE L1 5280 5720 -2088 2221 99 0 0 chrX 24902652 24902976 -152071164 + AluSx SINE Alu 1 324 0 803 125 0 9 chrX 24902991 24903103 -152071037 + FLAM_A SINE Alu 8 118 -24 2351 81 7 0 chrX 24903480 24903775 -152070365 + AluSp SINE Alu 2 298 -15 3172 27 3 0 chrX 24903890 24904265 -152069875 + L1PA4 LINE L1 5779 6154 -1 383 320 80 20 chrX 24904593 24904793 -152069347 + L2 LINE L2 2874 3085 -187 473 133 152 9 chrX 24905250 24905355 -152068785 + MER61A LTR ERV1 1 120 -223 463 81 0 54 chrX 24905354 24905428 -152068712 + MER61A LTR ERV1 274 343 0 * 2763 174 73 24 chrX 24905428 24906095 -152068045 + MER61A-int LTR ERV1 1 700 -4517 18146 99 19 16 chrX 24906135 24906707 -152067433 + MER61A-int LTR ERV1 1320 1889 -3328 2450 77 0 0 chrX 24906707 24907005 -152067135 - AluSg SINE Alu -12 298 1 18146 99 19 16 chrX 24907005 24910086 -152064054 + MER61A-int LTR ERV1 1889 5216 -1 1226 160 167 23 chrX 24910086 24910386 -152063754 + MER61A LTR ERV1 1 343 0 359 219 0 42 chrX 24910848 24910944 -152063196 + HsTC2 DNA Tc2 1 92 -1806 241 261 0 0 chrX 24910962 24911031 -152063109 + HsTC2 DNA Tc2 1723 1791 -107 1163 268 132 21 chrX 24911230 24911707 -152062433 + L1MC4a LINE L1 5320 5849 -1959 34 0 0 0 chrX 24911861 24911895 -152062245 + AT_rich Low_complexity Low_complexity 1 34 0 644 339 49 37 chrX 24912979 24913608 -152060532 + L1MEd LINE L1 12 648 -5471 256 217 72 24 chrX 24913629 24913712 -152060428 + MLT1H1 LTR MaLR 9 95 -495 801 257 135 52 chrX 24913767 24914210 -152059930 + MLT1H1 LTR MaLR 76 555 0 1301 225 89 66 chrX 24914358 24914831 -152059309 + L1MC4a LINE L1 5455 5945 -1863 2065 145 3 0 chrX 24914831 24915141 -152058999 + AluSx SINE Alu 1 311 -1 1301 225 89 66 chrX 24915141 24915231 -152058909 + L1MC4a LINE L1 5945 6031 -1777 613 254 124 28 chrX 24915351 24915732 -152058408 + L1MEd LINE L1 917 1236 -4886 377 268 148 78 chrX 24915732 24916145 -152057995 + HAL1b LINE L1 391 830 -518 2614 42 0 3 chrX 24916253 24916564 -152057576 + AluY SINE Alu 1 310 -1 206 351 0 0 chrX 24916625 24916739 -152057401 + A-rich Low_complexity Low_complexity 1 114 0 481 334 51 10 chrX 24916819 24917328 -152056812 + L1MEd LINE L1 2218 2747 -3382 1043 167 0 0 chrX 24917531 24917687 -152056453 - FRAM SINE Alu -16 160 5 389 333 57 29 chrX 24918799 24919045 -152055095 - MIR SINE MIR 0 262 10 184 409 88 7 chrX 24919321 24919458 -152054682 - L2 LINE L2 -9 3263 3116 186 43 0 0 chrX 24919859 24919882 -152054258 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 21 57 0 0 chrX 24920011 24920046 -152054094 + AT_rich Low_complexity Low_complexity 1 35 0 492 106 0 0 chrX 24920264 24920349 -152053791 + L1MA7 LINE L1 6205 6289 -2 875 141 11 45 chrX 24920457 24920634 -152053506 - L1PA15 LINE L1 -3 6162 5992 216 200 0 0 chrX 24920644 24920689 -152053451 + T-rich Low_complexity Low_complexity 1 45 0 * 362 73 0 18 chrX 24920688 24920743 -152053397 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 1677 189 30 3 chrX 24920745 24921047 -152053093 - AluSx SINE Alu -2 310 1 5229 145 3 3 chrX 24921048 24922574 -152051566 - L1PA15 LINE L1 -126 6039 4513 3700 191 21 0 chrX 24922571 24923320 -152050820 + L1P LINE L1 3492 4256 -1890 * 704 142 0 8 chrX 24923320 24923440 -152050700 - MLT1A1 LTR MaLR -246 119 1 3683 113 31 17 chrX 24923698 24924276 -152049864 + L1PA16 LINE L1 5572 6157 -9 1765 170 3 7 chrX 24924377 24924671 -152049469 + AluJo SINE Alu 5 297 -15 1200 76 0 199 chrX 24924695 24924814 -152049326 - MLT2A1 LTR ERVL 0 444 415 2318 63 3 0 chrX 24924814 24925098 -152049042 - AluY SINE Alu -26 285 1 1200 76 0 199 chrX 24925098 24925269 -152048871 - MLT2A1 LTR ERVL -29 415 212 8334 50 12 0 chrX 24925269 24926335 -152047805 - HERVL LTR ERVL -1562 4092 3014 247 176 0 20 chrX 24927509 24927560 -152046580 + MLT1J2 LTR MaLR 77 126 -324 * 1068 234 89 23 chrX 24927527 24927921 -152046219 + MLT1L LTR MaLR 196 615 0 756 250 60 8 chrX 24929993 24930241 -152043899 - LTR33A LTR ERVL -27 496 236 1500 218 65 79 chrX 24930272 24930767 -152043373 - MLT1F1 LTR MaLR -5 562 75 750 170 33 71 chrX 24930816 24930909 -152043231 - MER69A DNA AcHobo -2351 175 91 1875 192 40 14 chrX 24930909 24931330 -152042810 + L1MB8 LINE L1 5747 6178 0 750 170 33 71 chrX 24931330 24931418 -152042722 - MER69A DNA AcHobo -2435 91 1 499 249 142 10 chrX 24931420 24931617 -152042523 - LTR33A LTR ERVL -292 231 9 2004 242 61 54 chrX 24932015 24932903 -152041237 + MER97a DNA MER1_type? 1 894 0 359 259 0 0 chrX 24932929 24933014 -152041126 - MIR SINE MIR -126 136 52 627 238 65 12 chrX 24933045 24933213 -152040927 - MIR SINE MIR -54 208 32 738 196 31 57 chrX 24934633 24934827 -152039313 + MER5A DNA MER1_type 1 189 0 314 331 94 36 chrX 24935099 24935428 -152038712 + L2 LINE L2 2127 2474 -840 326 346 79 12 chrX 24936423 24936677 -152037463 - LTR16C LTR ERVL -220 271 1 236 345 17 0 chrX 24936833 24936952 -152037188 + L2 LINE L2 2934 3054 -218 186 273 36 0 chrX 24937360 24937415 -152036725 - L3b LINE CR1 -336 1247 1191 3000 75 0 0 chrX 24938047 24938422 -152035718 + THE1C LTR MaLR 1 375 0 343 246 42 34 chrX 24938505 24938623 -152035517 - MER5A DNA MER1_type 0 189 71 316 161 25 0 chrX 24938695 24938776 -152035364 + (TA)n Simple_repeat Simple_repeat 1 83 0 234 62 0 0 chrX 24938851 24938883 -152035257 + (CA)n Simple_repeat Simple_repeat 2 33 0 249 108 0 0 chrX 24938940 24938977 -152035163 + (TG)n Simple_repeat Simple_repeat 2 38 0 552 180 107 0 chrX 24938987 24939109 -152035031 - LTR16C LTR ERVL -3 488 354 276 345 77 30 chrX 24939171 24939339 -152034801 - LTR16C LTR ERVL -315 176 1 2506 54 0 0 chrX 24940970 24941267 -152032873 + AluY SINE Alu 3 299 -12 198 167 0 0 chrX 24941769 24941805 -152032335 + GA-rich Low_complexity Low_complexity 3 38 0 1996 66 4 0 chrX 24941831 24942143 -152031997 + AluSx SINE Alu 39 351 0 26 74 0 0 chrX 24942885 24942939 -152031201 + AT_rich Low_complexity Low_complexity 1 54 0 207 224 17 0 chrX 24943036 24943094 -152031046 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 1151 142 0 0 chrX 24943226 24943388 -152030752 + FRAM SINE Alu 2 163 -13 25 0 0 0 chrX 24943800 24943825 -152030315 + AT_rich Low_complexity Low_complexity 1 25 0 2151 31 0 4 chrX 24944023 24944313 -152029827 - L1PA3 LINE L1 0 6155 5902 1769 140 0 7 chrX 24944315 24944593 -152029547 + AluSx SINE Alu 1 276 -36 1561 112 31 0 chrX 24944869 24945092 -152029048 + MER30 DNA MER1_type 1 230 0 324 0 0 0 chrX 24945395 24945431 -152028709 + (CA)n Simple_repeat Simple_repeat 2 37 0 460 233 106 42 chrX 24945818 24946007 -152028133 - L1ME3A LINE L1 -8 6162 5962 833 207 47 77 chrX 24946066 24946234 -152027906 - L1ME3A LINE L1 -213 5957 5800 1500 93 75 0 chrX 24946234 24946448 -152027692 - MER30 DNA MER1_type 0 230 1 833 207 47 77 chrX 24946448 24946579 -152027561 - L1ME3A LINE L1 -370 5800 5667 23 0 0 0 chrX 24948051 24948074 -152026066 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chrX 24948903 24948946 -152025194 + AT_rich Low_complexity Low_complexity 1 43 0 2156 119 0 0 chrX 24949163 24949457 -152024683 - AluSx SINE Alu -18 294 1 1816 162 0 7 chrX 24950932 24951238 -152022902 - AluJo SINE Alu 0 304 1 229 180 82 0 chrX 24951482 24951543 -152022597 - L1MA10 LINE L1 0 6334 6269 1887 157 0 7 chrX 24951875 24952168 -152021972 - AluJb SINE Alu -21 291 1 262 307 87 46 chrX 24952611 24952829 -152021311 - L2 LINE L2 -387 2927 2701 555 242 108 57 chrX 24952846 24953235 -152020905 + L1MC4a LINE L1 5722 6130 -1678 21 0 0 0 chrX 24953255 24953276 -152020864 + AT_rich Low_complexity Low_complexity 1 21 0 897 244 19 14 chrX 24954414 24954623 -152019517 + MIR SINE MIR 49 258 -4 396 303 28 61 chrX 24954677 24954733 -152019407 - L1MD2 LINE L1 -245 6114 6059 3551 148 29 72 chrX 24954733 24955568 -152018572 - L1MA8 LINE L1 -210 6081 5283 * 6478 172 24 15 chrX 24955566 24956926 -152017214 + L1MA8 LINE L1 3938 5308 -838 218 316 58 47 chrX 24957027 24957198 -152016942 - L2 LINE L2 -408 2906 2734 3265 187 45 80 chrX 24958011 24958840 -152015300 - L1ME2 LINE L1 -13 6151 5339 1485 167 22 13 chrX 24958840 24959157 -152014983 - L1MA8 LINE L1 -6 6285 5966 3265 187 45 80 chrX 24959157 24959282 -152014858 - L1ME2 LINE L1 -825 5339 5211 191 268 56 14 chrX 24959306 24959377 -152014763 - L3b LINE CR1 -246 1337 1264 897 196 5 64 chrX 24959571 24959791 -152014349 + MER3 DNA MER1_type 1 207 -2 304 304 14 22 chrX 24959887 24960185 -152013955 + L1MC4a LINE L1 4726 5019 -1127 228 128 106 0 chrX 24960453 24960500 -152013640 + MLT-int LTR MaLR 1444 1495 -240 5877 102 35 22 chrX 24960500 24960972 -152013168 - Tigger3b DNA MER2_type -1797 1231 767 2318 108 3 0 chrX 24960972 24961278 -152012862 + AluSp SINE Alu 1 307 -6 5877 102 35 22 chrX 24961278 24962010 -152012130 - Tigger3b DNA MER2_type -2261 767 1 651 156 97 159 chrX 24962010 24962267 -152011873 + MLT1C-int LTR MaLR 1131 1371 0 1368 221 39 68 chrX 24962267 24962458 -152011682 + MLT1C LTR MaLR 1 196 -271 1655 153 40 7 chrX 24962458 24962733 -152011407 + AluJb SINE Alu 1 284 -28 1368 221 39 68 chrX 24962733 24962998 -152011142 + MLT1C LTR MaLR 196 444 -23 480 318 67 28 chrX 24963416 24964032 -152010108 + L1MC4a LINE L1 5255 5894 -1914 465 226 139 0 chrX 24964117 24964254 -152009886 + MLT1H LTR MaLR 7 162 -387 319 208 25 67 chrX 24964462 24964582 -152009558 + MLT1C LTR MaLR 434 548 -1 1587 202 26 45 chrX 24964878 24965298 -152008842 + MLT1C LTR MaLR 54 465 -2 352 250 111 44 chrX 24965319 24965499 -152008641 - MLT1J LTR MaLR -3 508 317 258 296 8 48 chrX 24965699 24965824 -152008316 - L2 LINE L2 -737 2577 2458 968 97 0 159 chrX 24966041 24966268 -152007872 + L1MC1 LINE L1 6128 6318 -15 1863 174 0 13 chrX 24966277 24966588 -152007552 + AluJb SINE Alu 1 307 -5 22 35 0 0 chrX 24966697 24966726 -152007414 + AT_rich Low_complexity Low_complexity 1 29 0 899 272 82 37 chrX 24966832 24967421 -152006719 + HAL1b LINE L1 55 669 -679 2034 121 0 3 chrX 24967432 24967741 -152006399 + AluSx SINE Alu 1 308 0 409 341 63 20 chrX 24967784 24968039 -152006101 + L1 LINE L1 2257 2522 -3624 1633 201 40 40 chrX 24968208 24968582 -152005558 + MLT1A2 LTR MaLR 1 374 0 500 193 22 44 chrX 24968804 24968939 -152005201 - MER104 DNA Tc2 -6 174 43 426 288 105 46 chrX 24969220 24969641 -152004499 + L1 LINE L1 2978 3430 -2716 2227 82 4 0 chrX 24969641 24969920 -152004220 + AluSp SINE Alu 3 282 -31 426 288 105 46 chrX 24969920 24969968 -152004172 + L1 LINE L1 3430 3474 -2672 1107 247 215 22 chrX 24969987 24970566 -152003574 - LTR50 LTR ERVL -19 682 64 235 355 11 11 chrX 24970745 24970928 -152003212 + L1 LINE L1 3753 3935 -2211 731 284 126 33 chrX 24971010 24971344 -152002796 - L2 LINE L2 0 3313 2949 1336 333 68 17 chrX 24971378 24972133 -152002007 - L2 LINE L2 -801 2513 1721 1840 248 166 8 chrX 24972235 24972887 -152001253 + L2 LINE L2 2272 3006 -307 756 150 0 29 chrX 24973083 24973256 -152000884 + GA-rich Low_complexity Low_complexity 3 170 0 192 284 45 0 chrX 24973530 24973597 -152000543 - MIR SINE MIR -128 134 65 24 32 0 0 chrX 24973834 24973865 -152000275 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chrX 24974443 24974469 -151999671 + AT_rich Low_complexity Low_complexity 1 26 0 525 151 32 56 chrX 24975783 24975909 -151998231 - L1ME3A LINE L1 -10 6160 6038 1482 269 146 30 chrX 24975913 24976786 -151997354 - HAL1b LINE L1 -225 1123 352 564 15 0 0 chrX 24976786 24976851 -151997289 + (TG)n Simple_repeat Simple_repeat 2 66 0 2273 94 0 10 chrX 24976851 24977139 -151997001 - AluSx SINE Alu -27 285 1 1482 269 146 30 chrX 24977139 24977192 -151996948 - HAL1b LINE L1 -995 353 89 1389 272 68 14 chrX 24978427 24978854 -151995286 + L3 LINE CR1 434 883 -694 205 263 35 18 chrX 24978940 24978997 -151995143 + MIR SINE MIR 16 73 -135 412 280 138 37 chrX 24979219 24979437 -151994703 + L3 LINE CR1 1115 1354 -223 249 254 42 0 chrX 24979441 24979512 -151994628 + L3 LINE CR1 1469 1542 -35 2486 56 0 3 chrX 24979896 24980200 -151993940 + AluSc SINE Alu 1 303 -6 187 231 26 0 chrX 24981566 24981605 -151992535 - MIR SINE MIR -117 145 106 2388 64 3 0 chrX 24982072 24982367 -151991773 - AluSg SINE Alu -14 296 1 225 65 0 0 chrX 24983347 24983378 -151990762 + (CCCTG)n Simple_repeat Simple_repeat 3 33 0 23 0 0 0 chrX 24983421 24983444 -151990696 + GC_rich Low_complexity Low_complexity 1 23 0 302 295 143 48 chrX 24983704 24983955 -151990185 - L1M2 LINE L1 -5754 1095 821 211 204 0 20 chrX 24985482 24985531 -151988609 + C-rich Low_complexity Low_complexity 3 50 0 397 228 203 13 chrX 24986875 24987033 -151987107 + MIR SINE MIR 25 212 -50 32 0 0 0 chrX 24988119 24988151 -151985989 + AT_rich Low_complexity Low_complexity 1 32 0 272 120 20 0 chrX 24989164 24989214 -151984926 + CT-rich Low_complexity Low_complexity 1 51 0 28 48 0 0 chrX 24989607 24989649 -151984491 + AT_rich Low_complexity Low_complexity 1 42 0 1176 293 92 5 chrX 24989865 24990258 -151983882 + MER115 DNA AcHobo 32 458 -235 242 118 0 59 chrX 24992159 24992210 -151981930 - MER116 DNA Mariner 0 80 33 1903 211 132 30 chrX 24992478 24993018 -151981122 + MLT1G1 LTR MaLR 1 595 0 2228 140 39 83 chrX 24993258 24993778 -151980362 + MLT1D LTR MaLR 3 499 -6 343 247 96 7 chrX 24994203 24994349 -151979791 - L1ME2 LINE L1 0 6164 6006 507 60 0 0 chrX 24994349 24994416 -151979724 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 2434 85 3 0 chrX 24994423 24994730 -151979410 - AluSg SINE Alu -2 308 1 2045 113 0 20 chrX 24994735 24995027 -151979113 - AluSx SINE Alu 0 312 27 1945 205 33 45 chrX 24995043 24995484 -151978656 - L1ME2 LINE L1 -143 6021 5585 2562 111 23 10 chrX 24995484 24995880 -151978260 - MER57A LTR ERV1 -2 401 1 1945 205 33 45 chrX 24995880 24995950 -151978190 - L1ME2 LINE L1 -579 5585 5516 185 150 0 25 chrX 24996660 24996700 -151977440 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 534 304 38 87 chrX 24996894 24997263 -151976877 - L2 LINE L2 -5 3267 2917 1956 201 87 49 chrX 24997319 24997926 -151976214 + L1MC4 LINE L1 7413 8042 0 487 321 63 39 chrX 24997991 24998324 -151975816 - L2 LINE L2 -631 2683 2343 1588 255 173 10 chrX 24998327 24998848 -151975292 + L2 LINE L2 2372 2977 -337 560 283 31 95 chrX 24998856 24999372 -151974768 - MLT1J LTR MaLR -28 483 1 22 0 0 0 chrX 24999949 24999971 -151974169 + AT_rich Low_complexity Low_complexity 1 22 0 2250 82 0 0 chrX 25001496 25001775 -151972365 + AluY SINE Alu 1 279 -32 255 20 0 78 chrX 25001775 25001826 -151972314 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 238 227 0 0 chrX 25002974 25003018 -151971122 - MIR3 SINE MIR -11 197 154 239 369 0 0 chrX 25003029 25003094 -151971046 - MIR SINE MIR -124 84 20 1645 218 73 38 chrX 25004035 25004488 -151969652 + L1ME2 LINE L1 5597 6089 -89 870 195 158 5 chrX 25004488 25004678 -151969462 - MER20 DNA MER1_type 0 219 1 1645 218 73 38 chrX 25004678 25004771 -151969369 + L1ME2 LINE L1 6089 6177 -1 2614 128 0 12 chrX 25004802 25005232 -151968908 + L1MC3 LINE L1 7202 7626 -159 198 0 0 0 chrX 25005275 25005297 -151968843 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7117 54 0 0 chrX 25005297 25006810 -151967330 - L1PA6 LINE L1 -18 6136 4624 677 131 9 9 chrX 25006811 25006918 -151967222 + FLAM_C SINE Alu 27 133 -10 645 174 36 0 chrX 25006920 25007058 -151967082 + L1MC3 LINE L1 7617 7759 -26 540 181 9 0 chrX 25007420 25007536 -151966604 + L1MA6 LINE L1 3345 3461 -2685 * 6817 145 31 26 chrX 25007530 25008587 -151965553 + L1MA6 LINE L1 3980 5031 -1269 2049 166 0 0 chrX 25008587 25008894 -151965246 + AluSx SINE Alu 3 309 -3 6817 145 31 26 chrX 25008894 25009450 -151964690 + L1MA6 LINE L1 5031 5583 -717 2374 94 0 0 chrX 25009450 25009749 -151964391 + AluSx SINE Alu 2 300 -12 6817 145 31 26 chrX 25009749 25010315 -151963825 + L1MA6 LINE L1 5583 6157 -143 1790 169 0 44 chrX 25010360 25010679 -151963461 - AluSx SINE Alu -7 305 1 1051 76 63 0 chrX 25010680 25010838 -151963302 + L1MA6 LINE L1 6133 6300 0 359 352 16 32 chrX 25011038 25011163 -151962977 - L2 LINE L2 -8 3264 3142 238 259 99 37 chrX 25011577 25011658 -151962482 + MIR SINE MIR 92 177 -85 370 311 5 20 chrX 25011810 25012000 -151962140 + MIR SINE MIR 3 247 -15 426 288 58 0 chrX 25012022 25012161 -151961979 + L2 LINE L2 3167 3313 0 634 255 81 23 chrX 25012339 25012598 -151961542 + MLT1G LTR MaLR 15 288 -302 2538 211 37 37 chrX 25012887 25013426 -151960714 + MLT1F LTR MaLR 4 542 0 284 327 122 38 chrX 25014216 25014479 -151959661 + L3b LINE CR1 1291 1575 -8 382 301 29 12 chrX 25015827 25016000 -151958140 - L1ME4a LINE L1 0 6121 5946 419 299 143 26 chrX 25016094 25016325 -151957815 + MIR SINE MIR 5 262 0 454 271 233 23 chrX 25016336 25016679 -151957461 - L1ME4a LINE L1 -366 5755 5341 202 310 10 70 chrX 25016681 25016781 -151957359 - L2 LINE L2 -3 3269 3176 1558 148 7 69 chrX 25017592 25017897 -151956243 - AluJo SINE Alu -26 286 1 859 233 175 53 chrX 25018013 25018430 -151955710 - MER110A LTR ERV1 0 468 1 397 273 55 0 chrX 25018451 25018561 -151955579 - MIR SINE MIR -65 143 28 190 214 24 0 chrX 25019301 25019343 -151954797 + L2 LINE L2 3271 3313 0 828 312 80 56 chrX 25020491 25021094 -151953046 + L3 LINE CR1 359 975 -602 197 235 52 87 chrX 25021844 25021959 -151952181 + L2 LINE L2 2262 2372 -942 493 323 143 31 chrX 25022264 25022558 -151951582 + L3 LINE CR1 1246 1572 -5 253 214 122 41 chrX 25022607 25022705 -151951435 + L1ME4a LINE L1 6012 6117 -4 1165 254 46 60 chrX 25022833 25023303 -151950837 - MLT1J LTR MaLR -7 504 1 524 232 53 13 chrX 25023435 25023586 -151950554 + MIR SINE MIR 106 262 0 297 0 0 0 chrX 25023785 25023818 -151950322 + (TG)n Simple_repeat Simple_repeat 1 33 0 270 0 0 0 chrX 25023817 25023847 -151950293 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 4607 138 37 90 chrX 25027510 25028522 -151945618 + L1MC3 LINE L1 6828 7785 0 2270 90 3 3 chrX 25029631 25029931 -151944209 + AluSp SINE Alu 1 300 -13 413 190 0 0 chrX 25030865 25030944 -151943196 + MIR SINE MIR 183 261 -1 3534 79 2 5 chrX 25030955 25031399 -151942741 - L1PA10 LINE L1 -2 6166 5724 780 267 58 12 chrX 25031593 25031833 -151942307 + LTR16C LTR ERVL 182 432 -59 28 48 0 0 chrX 25033113 25033155 -151940985 + AT_rich Low_complexity Low_complexity 1 42 0 861 128 0 43 chrX 25033543 25033684 -151940456 - AluJb SINE Alu -177 135 1 1756 164 10 3 chrX 25033725 25034017 -151940123 + AluJb SINE Alu 1 294 -18 2311 186 40 12 chrX 25034173 25034667 -151939473 - Charlie4a DNA MER1_type 0 508 1 574 341 72 0 chrX 25035488 25035711 -151938429 + MIR SINE MIR 9 247 -15 2273 90 7 10 chrX 25035720 25036021 -151938119 + AluSq SINE Alu 1 300 -13 180 125 0 0 chrX 25036337 25036369 -151937771 + (CA)n Simple_repeat Simple_repeat 1 32 0 592 323 80 32 chrX 25037353 25037898 -151936242 + L2 LINE L2 2644 3205 -108 303 194 28 28 chrX 25037898 25037970 -151936170 - LTR16C LTR ERVL 0 491 420 261 204 43 54 chrX 25038004 25038097 -151936043 - MLT2E LTR ERVL -54 574 483 321 339 26 0 chrX 25038331 25038446 -151935694 + L2 LINE L2 3194 3311 -2 495 193 0 0 chrX 25039412 25039500 -151934640 - L2 LINE L2 -1 3312 3225 2195 185 69 41 chrX 25039512 25040020 -151934120 + L1ME1 LINE L1 5640 6161 -5 538 243 38 92 chrX 25040359 25040598 -151933542 + LTR16C LTR ERVL 266 491 0 6266 278 89 21 chrX 25040665 25041579 -151932561 - L2 LINE L2 -248 3065 2214 2076 141 52 35 chrX 25041579 25041948 -151932192 + THE1C LTR MaLR 1 375 0 6266 278 89 21 chrX 25041948 25043382 -151930758 - L2 LINE L2 -1099 2214 572 295 269 67 45 chrX 25043905 25044039 -151930101 + MER5B DNA MER1_type 42 178 0 2165 122 16 3 chrX 25044145 25044448 -151929692 + AluSx SINE Alu 1 307 -5 253 111 0 0 chrX 25044594 25044630 -151929510 + MER5A DNA MER1_type 154 189 0 226 271 43 0 chrX 25045798 25045868 -151928272 + CT-rich Low_complexity Low_complexity 1 73 0 668 175 137 0 chrX 25046011 25046170 -151927970 + MER5A DNA MER1_type 4 187 -2 3178 159 68 4 chrX 25046173 25046720 -151927420 - MER6A DNA MER2_type 0 605 24 899 147 0 0 chrX 25046735 25046871 -151927269 - AluJb SINE Alu -18 294 159 373 143 16 16 chrX 25046872 25046935 -151927205 - AluJb SINE Alu -115 187 125 324 158 0 0 chrX 25046958 25047015 -151927125 + (TG)n Simple_repeat Simple_repeat 2 58 0 950 112 0 0 chrX 25047042 25047167 -151926973 - AluJb SINE Alu -187 125 1 251 296 25 0 chrX 25047271 25047352 -151926788 + MER115 DNA AcHobo 151 233 -460 213 39 0 0 chrX 25047545 25047571 -151926569 + (TC)n Simple_repeat Simple_repeat 2 27 0 1023 227 8 21 chrX 25047571 25047809 -151926331 + MER115 DNA AcHobo 459 693 0 235 286 193 21 chrX 25047946 25048086 -151926054 - L3b LINE CR1 -318 1265 1102 369 319 53 0 chrX 25048182 25048295 -151925845 - MER5A DNA MER1_type -64 125 7 180 405 0 0 chrX 25048435 25048514 -151925626 - L2 LINE L2 -8 3264 3186 237 33 0 0 chrX 25050342 25050372 -151923768 + (CA)n Simple_repeat Simple_repeat 1 30 0 323 304 20 20 chrX 25050372 25050474 -151923666 - L3 LINE CR1 -66 1511 1410 225 185 93 19 chrX 25051057 25051111 -151923029 - MLT1K LTR MaLR -2 586 529 308 229 38 99 chrX 25051188 25051319 -151922821 - MLT1K LTR MaLR -92 496 374 832 229 30 45 chrX 25051923 25052124 -151922016 - MIR SINE MIR -37 225 28 562 295 20 10 chrX 25052358 25052579 -151921561 + MIR3 SINE MIR 1 219 -43 380 271 93 55 chrX 25052729 25052979 -151921161 - L1ME4a LINE L1 -24 6097 5858 457 300 83 21 chrX 25052979 25053219 -151920921 + MER112 DNA MER1_type 1 255 -1 380 271 93 55 chrX 25053219 25053334 -151920806 - L1ME4a LINE L1 -263 5858 1269 701 309 55 66 chrX 25053347 25053859 -151920281 - L2 LINE L2 0 3313 2808 2231 103 109 3 chrX 25054165 25054494 -151919646 - L1PB3 LINE L1 -8 6146 5783 411 152 0 0 chrX 25054495 25054574 -151919566 + (TA)n Simple_repeat Simple_repeat 2 80 0 4429 164 30 22 chrX 25054587 25055063 -151919077 - L1PB3 LINE L1 -363 5791 5320 2578 51 0 0 chrX 25055063 25055359 -151918781 - AluY SINE Alu -15 296 1 4429 164 30 22 chrX 25055359 25056356 -151917784 - L1PB3 LINE L1 -834 5320 4289 309 286 0 48 chrX 25056375 25056459 -151917681 + L2 LINE L2 3234 3313 0 2640 242 41 11 chrX 25057385 25058026 -151916114 - L1ME3A LINE L1 0 6170 5511 885 254 28 14 chrX 25058455 25058672 -151915468 + MIR SINE MIR 42 261 -1 930 200 71 31 chrX 25058754 25058979 -151915161 + L1ME LINE L1 5538 5771 -399 1397 243 72 13 chrX 25058982 25059369 -151914771 - LTR16A1 LTR ERVL -44 413 4 212 306 0 61 chrX 25060310 25060408 -151913732 - L2 LINE L2 0 3313 3222 527 179 0 0 chrX 25060728 25060806 -151913334 + Tigger3(Golem) DNA MER2_type 2 79 -2950 771 151 8 0 chrX 25060814 25060933 -151913207 + Tigger3(Golem) DNA MER2_type 2910 3029 0 215 318 16 0 chrX 25061433 25061496 -151912644 + (CAG)n Simple_repeat Simple_repeat 1 64 0 190 329 13 0 chrX 25061503 25061579 -151912561 - MIR SINE MIR -30 232 156 300 246 15 0 chrX 25061579 25061644 -151912496 - MER2 DNA MER2_type 0 345 280 457 183 0 0 chrX 25061710 25061781 -151912359 + FLAM_C SINE Alu 37 107 -36 1022 141 117 0 chrX 25061781 25061944 -151912196 - MER2 DNA MER2_type -163 182 1 279 319 21 21 chrX 25061964 25062058 -151912082 - MIR SINE MIR -150 112 19 467 241 173 0 chrX 25062112 25062274 -151911866 + MIR SINE MIR 67 256 -6 1254 93 26 31 chrX 25062968 25063162 -151910978 - L1PA13 LINE L1 0 6163 5971 1561 226 67 18 chrX 25063162 25063654 -151910486 - L1M4 LINE L1 -2938 3208 2693 194 0 39 0 chrX 25063654 25063680 -151910460 + (TA)n Simple_repeat Simple_repeat 2 28 0 1007 201 31 38 chrX 25064008 25064145 -151909995 - L1M4 LINE L1 -3609 2537 2401 1908 140 21 7 chrX 25064145 25064431 -151909709 - AluJo SINE Alu -21 291 2 1007 201 31 38 chrX 25064431 25064582 -151909558 - L1M4 LINE L1 -3745 2401 2251 362 253 74 0 chrX 25065049 25065144 -151908996 + MIR SINE MIR 88 189 -73 212 259 74 0 chrX 25066281 25066335 -151907805 + MER5A DNA MER1_type 64 121 -68 30 0 0 0 chrX 25066977 25067007 -151907133 + AT_rich Low_complexity Low_complexity 1 30 0 7121 61 11 2 chrX 25068382 25069497 -151904643 + L1PA8A LINE L1 5006 6128 -3 296 258 121 16 chrX 25069552 25069676 -151904464 + L2 LINE L2 3177 3313 0 189 269 58 0 chrX 25069729 25069781 -151904359 + MIR SINE MIR 118 172 -90 1478 252 51 22 chrX 25069818 25070227 -151903913 + LTR16A LTR ERVL 21 441 -9 638 209 44 124 chrX 25070428 25070585 -151903555 + MIR SINE MIR 2 137 -125 1995 146 13 3 chrX 25070585 25070894 -151903246 + AluSx SINE Alu 1 312 0 638 209 44 124 chrX 25070894 25070961 -151903179 + MIR SINE MIR 137 208 -54 544 302 131 37 chrX 25071162 25071490 -151902650 + LTR16A LTR ERVL 92 450 0 2607 40 0 0 chrX 25072060 25072358 -151901782 - AluY SINE Alu -13 298 1 1773 171 0 0 chrX 25073782 25074062 -151900078 - AluJb SINE Alu -32 280 1 365 306 65 8 chrX 25074064 25074188 -151899952 - L2 LINE L2 0 3272 3142 791 180 170 5 chrX 25074241 25074435 -151899705 - MIR SINE MIR -21 241 16 251 72 24 108 chrX 25074610 25074693 -151899447 + (GA)n Simple_repeat Simple_repeat 1 76 0 613 203 0 8 chrX 25074840 25074958 -151899182 + MER103 DNA DNA 3 119 -47 183 129 0 0 chrX 25075452 25075483 -151898657 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 588 310 88 5 chrX 25075904 25076120 -151898020 + MIR SINE MIR 27 260 -2 281 256 0 35 chrX 25076560 25076646 -151897494 + LTR67 LTR ERVL 460 542 -15 2959 9 0 0 chrX 25077197 25077515 -151896625 + AluYb8 SINE Alu 1 318 0 263 303 13 13 chrX 25078532 25078608 -151895532 + MIR3 SINE MIR 117 192 -16 402 264 71 13 chrX 25079032 25079187 -151894953 + MER103 DNA DNA 1 164 -2 2145 180 25 0 chrX 25079259 25079615 -151894525 + MLT1A1 LTR MaLR 1 365 0 2496 144 48 0 chrX 25079615 25080012 -151894128 + MLT1A1-int LTR MaLR 1 416 -1319 3081 204 34 42 chrX 25080021 25080348 -151893792 + MLT1A1-int LTR MaLR 1044 1372 -363 1813 125 64 4 chrX 25080348 25080629 -151893511 - AluSx SINE Alu -14 298 1 3081 204 34 42 chrX 25080629 25080998 -151893142 + MLT1A1-int LTR MaLR 1372 1735 0 1849 158 128 18 chrX 25080998 25081327 -151892813 + MLT1A1 LTR MaLR 1 365 0 285 98 0 0 chrX 25083585 25083626 -151890514 + (TG)n Simple_repeat Simple_repeat 2 42 0 216 97 0 0 chrX 25083627 25083658 -151890482 + (GA)n Simple_repeat Simple_repeat 2 32 0 219 295 26 26 chrX 25083696 25083774 -151890366 + MIR SINE MIR 117 194 -68 1937 207 42 28 chrX 25083819 25084292 -151889848 - Charlie4a DNA MER1_type 0 508 29 2245 126 0 0 chrX 25084511 25084820 -151889320 - AluSx SINE Alu -3 309 1 879 123 0 39 chrX 25086177 25086307 -151887833 + FLAM_C SINE Alu 1 125 -8 195 284 15 45 chrX 25086749 25086816 -151887324 - MIR SINE MIR -18 244 180 603 272 71 16 chrX 25086899 25087083 -151887057 + MIR SINE MIR 20 213 -49 212 100 25 0 chrX 25087110 25087150 -151886990 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 267 31 0 0 chrX 25088172 25088204 -151885936 + (GA)n Simple_repeat Simple_repeat 1 32 0 12976 24 1 2 chrX 25088812 25091002 -151883138 + L1PA4 LINE L1 3962 6150 -5 307 305 114 48 chrX 25091025 25091209 -151882931 - MIR SINE MIR -63 145 5 305 140 18 0 chrX 25091361 25091418 -151882722 + (TG)n Simple_repeat Simple_repeat 1 58 0 390 320 33 0 chrX 25091519 25091641 -151882499 + MIR SINE MIR 71 196 -66 203 213 0 0 chrX 25092579 25092626 -151881514 + L2 LINE L2 3267 3313 0 407 303 26 32 chrX 25093307 25093462 -151880678 - L2 LINE L2 -369 2945 2792 835 260 198 11 chrX 25093464 25093822 -151880318 - L2 LINE L2 -1100 2214 1790 1482 137 103 0 chrX 25093825 25094058 -151880082 - Tigger3(Golem) DNA MER2_type -2 3027 2771 821 156 0 106 chrX 25094054 25094214 -151879926 - Tigger3(Golem) DNA MER2_type -2886 143 1 * 760 267 136 13 chrX 25094225 25094600 -151879540 - L2 LINE L2 -1537 1777 1357 2180 125 3 0 chrX 25094659 25094962 -151879178 + AluSx SINE Alu 1 304 -8 1107 139 5 27 chrX 25095448 25095635 -151878505 - MER5A DNA MER1_type -1 188 6 231 270 220 0 chrX 25097231 25097331 -151876809 + L2 LINE L2 3151 3272 0 2144 130 0 10 chrX 25097960 25098267 -151875873 - AluSx SINE Alu -8 304 1 180 307 33 78 chrX 25098532 25098685 -151875455 - MIR SINE MIR -10 252 107 380 319 106 65 chrX 25099057 25099349 -151874791 + L3 LINE CR1 1241 1544 -33 1740 237 67 12 chrX 25099955 25100449 -151873691 + L1ME3 LINE L1 5589 6109 -53 383 230 50 60 chrX 25100735 25100835 -151873305 + MIR SINE MIR 45 143 -65 430 171 23 23 chrX 25100854 25100942 -151873198 - L2 LINE L2 0 3313 3226 405 212 136 15 chrX 25101509 25101641 -151872499 - LTR16C LTR ERVL 0 491 344 361 274 23 21 chrX 25102052 25102198 -151871942 + L1MC5 LINE L1 7845 8042 0 199 368 15 0 chrX 25102448 25102516 -151871624 - MIR SINE MIR -119 143 75 197 227 23 0 chrX 25102838 25102882 -151871258 - L2 LINE L2 -13 3259 3215 1310 245 49 83 chrX 25103826 25104333 -151869807 + LTR16C LTR ERVL 1 490 -1 1329 274 62 8 chrX 25104599 25104968 -151869172 + LTR16A LTR ERVL 62 450 0 439 309 120 52 chrX 25104970 25105486 -151868654 + L2 LINE L2 2449 3000 -272 219 225 0 0 chrX 25105486 25105526 -151868614 + (CA)n Simple_repeat Simple_repeat 2 41 0 842 262 66 50 chrX 25105615 25105977 -151868163 - LTR16C LTR ERVL -4 487 120 195 351 53 9 chrX 25106595 25106709 -151867431 - MIR3 SINE MIR -8 200 82 256 242 36 91 chrX 25106874 25106891 -151867249 - L1MA10 LINE L1 -2 6332 6316 3591 208 28 35 chrX 25106891 25107736 -151866404 - L1ME2 LINE L1 -9 6155 5317 5566 112 2 50 chrX 25107740 25108617 -151865523 + L1PA16 LINE L1 5323 6157 -9 1266 177 42 21 chrX 25108635 25108980 -151865160 - L1ME2 LINE L1 -816 5330 4990 311 303 68 25 chrX 25109203 25109365 -151864775 + MIR SINE MIR 81 249 -13 598 256 6 28 chrX 25110028 25110204 -151863936 + MIR SINE MIR 91 262 0 1408 256 63 37 chrX 25111038 25111860 -151862280 + MER45C DNA AcHobo 3 953 0 490 231 48 43 chrX 25111914 25112136 -151862004 - MLT1J1 LTR MaLR -228 222 1 288 273 23 0 chrX 25112341 25112429 -151861711 - Charlie7 DNA MER1_type 0 2612 2523 22 0 0 0 chrX 25112480 25112502 -151861638 + AT_rich Low_complexity Low_complexity 1 22 0 1308 257 57 48 chrX 25112665 25113454 -151860686 - L2 LINE L2 -3 3310 2516 321 326 81 40 chrX 25113458 25113997 -151860143 + L2 LINE L2 2715 3308 -5 1011 211 14 14 chrX 25115371 25115594 -151858546 - L1ME3A LINE L1 -5 6165 5943 332 260 29 10 chrX 25115694 25115798 -151858342 + MLT1H LTR MaLR 84 189 -360 273 202 101 56 chrX 25115882 25115971 -151858169 + MLT1K LTR MaLR 304 396 -146 686 264 43 40 chrX 25117699 25118120 -151856020 - MLT1H1 LTR MaLR 0 555 94 341 229 29 0 chrX 25118314 25118384 -151855756 + L2 LINE L2 3201 3272 0 977 295 61 35 chrX 25118397 25118824 -151855316 + MLT1J2 LTR MaLR 1 438 -12 2121 230 35 101 chrX 25119276 25119911 -151854229 + MLT1E LTR MaLR 1 593 0 347 265 69 123 chrX 25120429 25120761 -151853379 + Charlie8 DNA MER1_type 151 464 -1953 265 203 34 0 chrX 25120786 25120845 -151853295 + Charlie8 DNA MER1_type 1365 1425 -992 345 325 175 12 chrX 25121589 25121674 -151852466 + L2 LINE L2 2152 2222 -1092 16069 117 53 5 chrX 25121674 25123976 -151850164 + Tigger1 DNA MER2_type 1 2414 -4 345 325 175 12 chrX 25123976 25124290 -151849850 + L2 LINE L2 2222 2616 -698 1482 99 0 5 chrX 25124310 25124511 -151849629 - L1PB1 LINE L1 -1 6150 5951 931 47 0 0 chrX 25124538 25124645 -151849495 - L1PA3 LINE L1 -4 6151 6045 3521 34 0 0 chrX 25124645 25125057 -151849083 + L1P LINE L1 4682 5093 -1053 * 4929 112 12 34 chrX 25125052 25125272 -151848868 - L1PB1 LINE L1 -176 5975 5752 438 69 0 0 chrX 25125272 25125330 -151848810 + (TA)n Simple_repeat Simple_repeat 1 58 0 4929 112 12 34 chrX 25125330 25126014 -151848126 - L1PB1 LINE L1 -399 5752 5091 622 292 12 6 chrX 25127161 25127329 -151846811 + MIR SINE MIR 3 171 -91 2299 136 72 49 chrX 25127525 25127996 -151846144 + L1MB7 LINE L1 5703 6184 0 422 294 56 8 chrX 25128277 25128403 -151845737 + MLT1K LTR MaLR 144 275 -313 370 295 0 0 chrX 25128533 25128628 -151845512 + MLT1K LTR MaLR 481 575 -13 901 247 31 9 chrX 25129970 25130193 -151843947 + MIR SINE MIR 34 261 -1 315 211 7 34 chrX 25130318 25130465 -151843675 + (TA)n Simple_repeat Simple_repeat 2 144 0 191 320 100 20 chrX 25130711 25130811 -151843329 - MIR3 SINE MIR -96 112 5 * 211 289 67 10 chrX 25130769 25130873 -151843267 + MIR SINE MIR 93 202 -60 828 229 70 37 chrX 25131794 25132008 -151842132 + MIR SINE MIR 28 248 -14 221 314 71 29 chrX 25132031 25132171 -151841969 + L2 LINE L2 2891 3036 -236 2452 165 62 19 chrX 25132348 25132828 -151841312 + L1MB8 LINE L1 5672 6172 -6 320 316 30 45 chrX 25133213 25133346 -151840794 - MIR3 SINE MIR -75 133 3 245 348 43 14 chrX 25133579 25133717 -151840423 + MIR SINE MIR 6 147 -115 382 291 60 20 chrX 25134057 25134208 -151839932 - MIR SINE MIR -72 190 34 1301 266 102 22 chrX 25135353 25135805 -151838335 + LTR16C LTR ERVL 4 491 0 426 162 49 84 chrX 25136778 25136910 -151837230 - MLT1H LTR MaLR -14 533 361 242 308 140 0 chrX 25137261 25137368 -151836772 + L2 LINE L2 3116 3237 -35 183 42 0 0 chrX 25137419 25137443 -151836697 + (AATAG)n Simple_repeat Simple_repeat 4 27 0 212 243 86 14 chrX 25137930 25138000 -151836140 - MIR SINE MIR -2 260 186 302 316 75 0 chrX 25138137 25138270 -151835870 + MIR3 SINE MIR 5 147 -61 5038 144 83 24 chrX 25138279 25138639 -151835501 - MER4D LTR ERV1 0 903 566 1475 190 63 7 chrX 25138639 25138923 -151835217 - AluJo SINE Alu -10 302 3 5038 144 83 24 chrX 25138923 25139414 -151834726 - MER4D LTR ERV1 -337 566 1 202 214 71 36 chrX 25139991 25140047 -151834093 - L2 LINE L2 -61 3252 3195 468 0 0 0 chrX 25140057 25140109 -151834031 + (TG)n Simple_repeat Simple_repeat 2 53 0 4641 136 15 9 chrX 25140958 25141736 -151832404 - L1PA16 LINE L1 -162 6004 5223 21 36 0 0 chrX 25141767 25141795 -151832345 + AT_rich Low_complexity Low_complexity 1 28 0 638 107 0 0 chrX 25141839 25141923 -151832217 - THE1C LTR MaLR 0 428 345 1121 130 16 27 chrX 25141925 25142109 -151832031 - THE1C LTR MaLR -190 185 4 11362 116 27 7 chrX 25142112 25143660 -151830480 - THE1C-int LTR MaLR 0 1580 1 1896 161 70 14 chrX 25143660 25144015 -151830125 - THE1C LTR MaLR 0 375 1 1798 189 27 6 chrX 25144237 25144602 -151829538 + L1ME2 LINE L1 5533 5905 -259 380 246 98 16 chrX 25144603 25144745 -151829395 + L1ME2 LINE L1 5990 6304 -30 1309 248 115 30 chrX 25146663 25147167 -151826973 - MLT1H1 LTR MaLR -4 551 5 314 324 88 7 chrX 25147615 25147751 -151826389 - MIR SINE MIR -103 159 13 256 354 8 39 chrX 25148753 25148880 -151825260 - L2 LINE L2 -3 3269 3147 704 301 80 62 chrX 25149065 25149906 -151824234 - L1MEd LINE L1 -5235 884 29 378 221 116 0 chrX 25151241 25151336 -151822804 + L2 LINE L2 1860 1965 -1349 270 0 0 0 chrX 25151713 25151743 -151822397 + (TA)n Simple_repeat Simple_repeat 2 31 0 472 147 26 42 chrX 25151894 25152007 -151822133 + L1ME LINE L1 5686 5796 -370 275 98 0 0 chrX 25152016 25152057 -151822083 - Alu SINE Alu -9 293 253 4645 81 10 0 chrX 25152057 25152640 -151821500 + L1PA13 LINE L1 5573 6161 -2 351 175 0 0 chrX 25153513 25153570 -151820570 - L2 LINE L2 -2 3311 3255 551 224 81 89 chrX 25154583 25155081 -151819059 - MLT1H LTR MaLR 0 549 1 278 324 26 2 chrX 25155105 25155224 -151818916 + MIR SINE MIR 25 146 -72 189 269 104 60 chrX 25155277 25155344 -151818796 - L2 LINE L2 -12 3260 3191 492 280 20 17 chrX 25155677 25155818 -151818322 - MIR3 SINE MIR -10 198 56 423 0 0 0 chrX 25156007 25156054 -151818086 + (A)n Simple_repeat Simple_repeat 1 47 0 314 267 10 50 chrX 25156197 25156298 -151817842 - MIR3 SINE MIR -54 154 58 1985 147 3 0 chrX 25156407 25156707 -151817433 - AluSx SINE Alu -11 301 1 23 0 0 0 chrX 25156980 25157003 -151817137 + AT_rich Low_complexity Low_complexity 1 23 0 398 308 71 63 chrX 25157367 25157620 -151816520 - MIR SINE MIR -3 259 5 442 206 199 22 chrX 25157919 25158055 -151816085 - MER5A DNA MER1_type -21 168 9 638 228 74 7 chrX 25158089 25158238 -151815902 + MIR SINE MIR 104 262 0 756 184 0 32 chrX 25158833 25158958 -151815182 + FLAM_A SINE Alu 3 123 -10 327 254 32 32 chrX 25158973 25159099 -151815041 + Charlie7 DNA MER1_type 31 156 -2456 1013 232 69 67 chrX 25159254 25159703 -151814437 + MLT1J2 LTR MaLR 1 450 0 540 315 39 11 chrX 25159825 25160006 -151814134 + MIR SINE MIR 3 188 -74 2168 164 55 6 chrX 25160424 25160772 -151813368 + MLT1A1 LTR MaLR 1 365 0 766 246 34 0 chrX 25160868 25161043 -151813097 - MER5A DNA MER1_type 0 189 9 229 228 30 119 chrX 25161057 25161158 -151812982 - L3 LINE CR1 -298 1279 1188 618 297 62 83 chrX 25161292 25161747 -151812393 - L2 LINE L2 -11 3261 2817 323 225 7 35 chrX 25162239 25162381 -151811759 + GA-rich Low_complexity Low_complexity 1 138 0 195 222 0 0 chrX 25162440 25162485 -151811655 + GA-rich Low_complexity Low_complexity 3 47 0 696 274 78 10 chrX 25162632 25162867 -151811273 + MIR SINE MIR 1 251 -11 201 121 0 0 chrX 25163346 25163379 -151810761 - L2 LINE L2 -1 3271 3239 402 280 20 0 chrX 25163985 25164085 -151810055 + MIR SINE MIR 53 154 -108 532 347 44 7 chrX 25164111 25164382 -151809758 - MLT1J LTR MaLR 0 511 231 344 216 0 26 chrX 25164377 25164466 -151809674 - MLT1J2 LTR MaLR -253 158 71 * 305 343 21 29 chrX 25164551 25164691 -151809449 + L2 LINE L2 3134 3272 0 676 204 32 38 chrX 25164833 25164990 -151809150 - MER91B DNA MER1_type 0 190 35 322 362 37 6 chrX 25165239 25165402 -151808738 + MIR SINE MIR 49 216 -46 475 247 38 86 chrX 25165473 25165659 -151808481 + MIR SINE MIR 52 228 -34 225 330 11 0 chrX 25167116 25167204 -151806936 - MIR SINE MIR -71 191 103 1140 224 31 8 chrX 25167210 25167465 -151806675 - MIR SINE MIR 0 262 2 1908 129 37 0 chrX 25168139 25168449 -151805691 + AluSx SINE Alu 1 320 0 1349 243 44 3 chrX 25168763 25169080 -151805060 - LTR16C LTR ERVL -9 482 153 490 248 0 40 chrX 25169235 25169360 -151804780 - MLT1K LTR MaLR -5 583 464 390 212 106 73 chrX 25169450 25169629 -151804511 - MLT1K LTR MaLR -132 456 272 3990 124 41 5 chrX 25169651 25170264 -151803876 + L1MA8 LINE L1 5651 6285 -6 257 319 0 0 chrX 25170295 25170386 -151803754 - L1MC4 LINE L1 -1338 6704 6614 403 330 0 0 chrX 25170390 25170502 -151803638 - MLT1K LTR MaLR -326 262 151 863 205 105 5 chrX 25170574 25170764 -151803376 + MER63A DNA MER1_type 2 210 0 511 232 32 16 chrX 25171036 25171161 -151802979 + L2 LINE L2 3187 3313 0 297 0 0 0 chrX 25172484 25172517 -151801623 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 333 0 0 0 chrX 25172516 25172553 -151801587 + (GA)n Simple_repeat Simple_repeat 1 37 0 336 251 123 43 chrX 25172673 25172836 -151801304 - MIR SINE MIR 0 262 87 239 325 90 18 chrX 25173168 25173334 -151800806 - L2 LINE L2 -22 3291 3114 905 250 0 27 chrX 25173340 25173564 -151800576 - MIR SINE MIR -43 219 2 1795 205 143 28 chrX 25173760 25174223 -151799917 - MLT1F LTR MaLR -9 533 18 882 283 217 36 chrX 25174862 25175477 -151798663 - L2 LINE L2 -38 3234 2523 22 0 0 0 chrX 25175791 25175813 -151798327 + AT_rich Low_complexity Low_complexity 1 22 0 1632 163 53 115 chrX 25175944 25176291 -151797849 - MLT1A2 LTR MaLR 0 374 7 210 37 0 0 chrX 25176291 25176318 -151797822 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2043 129 0 4 chrX 25176324 25176602 -151797538 - AluSx SINE Alu -35 277 1 1632 163 53 115 chrX 25176602 25176646 -151797494 - MLT1A2 LTR MaLR -328 46 1 459 277 78 40 chrX 25176756 25177068 -151797072 + L1ME4a LINE L1 4884 5183 -938 1514 169 0 54 chrX 25177068 25177364 -151796776 + AluJo SINE Alu 33 312 0 459 277 78 40 chrX 25177364 25178102 -151796038 + L1ME4a LINE L1 5183 5969 -152 758 183 18 12 chrX 25178111 25178275 -151795865 + MER104 DNA Tc2 13 177 -3 303 307 35 35 chrX 25179185 25179299 -151794841 + MIR SINE MIR 40 153 -55 280 254 0 42 chrX 25179637 25179708 -151794432 - MIR SINE MIR -78 184 117 1037 227 37 19 chrX 25180347 25180563 -151793577 + MER58A DNA MER1_type 4 223 -1 217 162 0 0 chrX 25181003 25181040 -151793100 - MIR3 SINE MIR -22 186 150 2460 128 25 0 chrX 25181302 25181655 -151792485 - THE1B LTR MaLR -2 362 1 322 388 63 34 chrX 25182594 25182831 -151791309 - L2 LINE L2 -9 3263 3020 408 313 162 35 chrX 25182856 25183183 -151790957 - L2 LINE L2 -1253 2061 1777 195 42 0 0 chrX 25183183 25183207 -151790933 + (TG)n Simple_repeat Simple_repeat 2 25 0 408 313 162 35 chrX 25183207 25183559 -151790581 - L2 LINE L2 -1537 1777 1296 324 206 59 0 chrX 25185999 25186067 -151788073 - MER5A DNA MER1_type -77 112 41 1062 312 213 10 chrX 25186621 25187343 -151786797 - L3 LINE CR1 -109 1468 600 198 209 0 0 chrX 25187581 25187624 -151786516 + GA-rich Low_complexity Low_complexity 1 43 0 664 261 77 24 chrX 25188924 25189031 -151785109 + L1ME3A LINE L1 5615 5715 -455 766 128 80 70 chrX 25189031 25189218 -151784922 - MER53 DNA DNA 0 189 1 664 261 77 24 chrX 25189218 25189397 -151784743 + L1ME3A LINE L1 5715 5916 -254 21 36 0 0 chrX 25189419 25189447 -151784693 + AT_rich Low_complexity Low_complexity 1 28 0 398 344 102 5 chrX 25189833 25190048 -151784092 - L2 LINE L2 -220 3052 2817 319 372 53 76 chrX 25190594 25190949 -151783191 - L2 LINE L2 -5 3267 2921 278 357 39 0 chrX 25191739 25191868 -151782272 - MIR SINE MIR -20 242 109 260 315 123 8 chrX 25192498 25192628 -151781512 - MIR3 SINE MIR -43 165 21 1398 159 23 5 chrX 25192903 25193123 -151781017 + MER58A DNA MER1_type 1 224 0 219 184 61 0 chrX 25193754 25193803 -151780337 - MIR3 SINE MIR -42 166 115 193 276 105 72 chrX 25194575 25194633 -151779507 - MIR3 SINE MIR -49 159 104 2152 248 74 25 chrX 25194633 25195265 -151778875 + MLT2F LTR ERVL 1 663 0 193 276 105 72 chrX 25195265 25195358 -151778782 - MIR3 SINE MIR -104 104 3 622 286 17 42 chrX 25196244 25196482 -151777658 + L2 LINE L2 2867 3098 -215 226 167 17 133 chrX 25196699 25196759 -151777381 - MER91C DNA MER1_type -63 77 25 409 333 56 0 chrX 25199079 25199223 -151774917 - MIR3 SINE MIR -24 184 33 263 213 40 40 chrX 25199986 25200061 -151774079 - MIR3 SINE MIR -49 159 85 5304 194 26 35 chrX 25200256 25201886 -151772254 - L1MD2 LINE L1 -16 6737 5124 936 210 41 0 chrX 25201886 25202129 -151772011 + MER69 DNA AcHobo 2183 2435 -91 3824 208 64 65 chrX 25202159 25203354 -151770786 - L1MD2 LINE L1 -1425 5115 3922 * 16432 170 22 9 chrX 25203352 25207120 -151767020 - L1MA5 LINE L1 -295 7424 3610 252 0 0 0 chrX 25207124 25207152 -151766988 + (TC)n Simple_repeat Simple_repeat 2 29 0 238 214 83 0 chrX 25207152 25207236 -151766904 + L1MC4 LINE L1 6614 6704 -1338 207 170 43 0 chrX 25207236 25207283 -151766857 + (TA)n Simple_repeat Simple_repeat 1 49 0 1590 186 4 7 chrX 25207286 25207560 -151766580 - AluJo SINE Alu -33 279 7 3757 237 54 32 chrX 25207565 25208900 -151765240 - L1MA5 LINE L1 -3960 3605 2242 1396 239 54 10 chrX 25208915 25209583 -151764557 - L1MD2 LINE L1 -3639 2901 2212 2450 89 48 20 chrX 25209583 25210061 -151764079 - LTR12 LTR ERV1 0 714 351 2970 205 74 21 chrX 25210061 25210104 -151764036 - L1MD2 LINE L1 -4628 1912 1873 279 0 0 0 chrX 25210104 25210135 -151764005 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2970 205 74 21 chrX 25210135 25211150 -151762990 - L1MD2 LINE L1 -4667 1873 828 302 333 29 0 chrX 25211277 25211382 -151762758 - L1MD2 LINE L1 -6120 423 316 686 256 5 44 chrX 25211676 25211879 -151762261 - L1MD2 LINE L1 -6329 211 17 55 48 0 0 chrX 25212350 25212433 -151761707 + AT_rich Low_complexity Low_complexity 1 83 0 38 68 0 0 chrX 25212646 25212719 -151761421 + AT_rich Low_complexity Low_complexity 1 73 0 563 287 62 21 chrX 25213594 25213980 -151760160 - L1MEc LINE L1 -855 1635 1306 372 298 58 78 chrX 25214012 25214254 -151759886 - L1MEc LINE L1 -4970 1149 913 2155 109 41 0 chrX 25214265 25214559 -151759581 + AluY SINE Alu 1 306 -5 21 57 0 0 chrX 25215282 25215317 -151758823 + AT_rich Low_complexity Low_complexity 1 35 0 589 341 108 45 chrX 25215716 25216764 -151757376 - L2 LINE L2 -2 3270 2150 282 321 88 23 chrX 25217134 25217349 -151756791 + L3b LINE CR1 1273 1501 -82 320 298 107 45 chrX 25217439 25217681 -151756459 + L2 LINE L2 2833 3089 -183 323 295 84 48 chrX 25217697 25217863 -151756277 - L2 LINE L2 -6 3307 3136 354 299 28 36 chrX 25217886 25218045 -151756095 - MLT1J1 LTR MaLR -46 465 243 1034 186 49 39 chrX 25218052 25218256 -151755884 + MER3 DNA MER1_type 1 206 -3 1322 228 115 29 chrX 25218382 25218798 -151755342 - HsTC2 DNA Tc2 0 1900 1273 * 3660 195 39 1 chrX 25218795 25219445 -151754695 - HsTC2 DNA Tc2 -1153 745 72 212 231 0 0 chrX 25219594 25219633 -151754507 + polypurine Low_complexity Low_complexity 2 40 0 237 159 0 0 chrX 25219673 25219717 -151754423 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 208 274 24 71 chrX 25221412 25221496 -151752644 - MIR SINE MIR -81 181 102 464 235 204 0 chrX 25221851 25221983 -151752157 - MLT1G1 LTR MaLR -14 528 370 719 219 164 44 chrX 25222020 25222294 -151751846 - MLT1G1 LTR MaLR -283 312 6 30 27 0 0 chrX 25222483 25222520 -151751620 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chrX 25223012 25223044 -151751096 + AT_rich Low_complexity Low_complexity 1 32 0 295 323 42 10 chrX 25223396 25223492 -151750648 - MIR3 SINE MIR -105 103 5 4042 112 11 4 chrX 25224486 25225039 -151749101 + L1PA15 LINE L1 5608 6164 -1 299 271 153 42 chrX 25225154 25225298 -151748842 + MIR3 SINE MIR 46 205 -3 203 298 71 0 chrX 25226152 25226236 -151747904 + L2 LINE L2 2961 3050 -222 554 309 72 39 chrX 25226354 25226820 -151747320 - MLT1K LTR MaLR 0 588 78 249 240 0 0 chrX 25226895 25226945 -151747195 + L2 LINE L2 3205 3254 -18 1647 274 21 38 chrX 25227673 25228246 -151745894 - MER115 DNA AcHobo -7 686 34 342 0 0 0 chrX 25228363 25228401 -151745739 + (CA)n Simple_repeat Simple_repeat 1 38 0 1138 308 65 38 chrX 25228598 25229076 -151745064 + LTR16C LTR ERVL 1 491 0 506 335 7 0 chrX 25229142 25229294 -151744846 - MIR SINE MIR -105 157 5 207 379 0 0 chrX 25229446 25229533 -151744607 + MIR SINE MIR 147 233 -29 375 253 94 24 chrX 25230747 25230931 -151743209 + MIR SINE MIR 32 220 -42 185 174 43 0 chrX 25231214 25231260 -151742880 - L2 LINE L2 -1553 1761 1714 319 139 125 28 chrX 25232915 25232987 -151741153 + LTR67 LTR ERVL 477 555 -2 647 305 109 52 chrX 25233003 25233442 -151740698 - L2 LINE L2 0 3272 2809 254 321 46 28 chrX 25233800 25233909 -151740231 + L2 LINE L2 2710 2820 -494 2690 212 52 118 chrX 25233975 25235236 -151738904 - L1MC4 LINE L1 -9 8033 6857 221 209 105 67 chrX 25235236 25235341 -151738799 - L2 LINE L2 -923 2391 2283 261 57 0 0 chrX 25235342 25235377 -151738763 + (CA)n Simple_repeat Simple_repeat 1 35 0 324 181 12 60 chrX 25235538 25235621 -151738519 + Charlie7 DNA MER1_type 29 107 -2505 294 206 38 46 chrX 25235606 25235737 -151738403 + Charlie7 DNA MER1_type 2434 2563 -49 * 329 318 107 34 chrX 25235754 25236081 -151738059 - L2 LINE L2 -1064 2250 1900 277 283 22 72 chrX 25236899 25237037 -151737103 + MIR SINE MIR 59 189 -73 1596 262 75 36 chrX 25237081 25237931 -151736209 - L2 LINE L2 0 3313 2422 261 309 18 45 chrX 25238005 25238115 -151736025 + MER117 DNA MER1_type 50 156 -41 1169 137 38 11 chrX 25238164 25238347 -151735793 + MER5A DNA MER1_type 1 188 -1 1143 134 0 11 chrX 25239068 25239314 -151734826 + AluJb SINE Alu 2 312 0 226 140 140 40 chrX 25239402 25239452 -151734688 + L1P3 LINE L1 689 743 -5132 1359 279 150 74 chrX 25239508 25240561 -151733579 - MER52A LTR ERV1 0 1755 623 293 320 155 53 chrX 25240768 25241389 -151732751 + L2 LINE L2 1919 2602 -712 273 255 166 82 chrX 25241383 25241751 -151732389 + L2 LINE L2 2839 3237 -35 * 295 340 107 7 chrX 25242197 25242347 -151731793 + L2 LINE L2 3104 3268 -4 871 272 168 37 chrX 25242947 25243351 -151730789 - LTR16A LTR ERVL 0 450 1 403 286 63 8 chrX 25243859 25243985 -151730155 - MIR3 SINE MIR -52 156 24 2281 106 0 0 chrX 25244030 25244331 -151729809 - AluSx SINE Alu -11 301 1 1125 229 40 8 chrX 25245544 25245793 -151728347 - MIR SINE MIR -2 260 4 510 227 100 0 chrX 25247072 25247182 -151726958 + MER96 DNA MER1_type? 13 133 -42 2985 68 3 0 chrX 25247848 25248215 -151725925 - L1PA6 LINE L1 0 6154 5787 1267 120 5 5 chrX 25248318 25248502 -151725638 - MER4E LTR ERV1 0 766 583 5327 110 26 62 chrX 25248505 25249362 -151724778 - LTR12 LTR ERV1 0 826 1 683 167 37 104 chrX 25249450 25249749 -151724391 - pTR5 LTR ERV1 -1418 1020 742 581 104 0 0 chrX 25249749 25249826 -151724314 - MADE1 DNA Mariner -1 79 3 983 101 0 63 chrX 25249826 25249984 -151724156 - MER4B LTR ERV1 -176 434 287 1721 168 46 37 chrX 25249984 25250362 -151723778 + MSTA LTR MaLR 1 428 0 1872 101 3 51 chrX 25250362 25250658 -151723482 - MER4B LTR ERV1 -319 291 10 320 317 50 0 chrX 25250698 25250818 -151723322 - L3b LINE CR1 -202 1381 1256 500 271 180 28 chrX 25252358 25252613 -151721527 - LTR16C LTR ERVL -9 482 189 243 350 48 0 chrX 25253814 25253917 -151720223 + MLT1K LTR MaLR 141 248 -340 578 242 73 64 chrX 25253963 25254010 -151720130 + MLT1K LTR MaLR 368 413 -175 2831 16 0 13 chrX 25254010 25254325 -151719815 + AluYa5 SINE Alu 1 311 0 578 242 73 64 chrX 25254325 25254496 -151719644 + MLT1K LTR MaLR 413 588 0 1131 216 73 70 chrX 25254584 25254969 -151719171 + MLT1C LTR MaLR 76 461 -6 36 0 0 0 chrX 25255030 25255066 -151719074 + AT_rich Low_complexity Low_complexity 1 36 0 715 269 14 55 chrX 25255180 25255399 -151718741 + MIR SINE MIR 43 252 -10 360 161 12 37 chrX 25255462 25255543 -151718597 + L1M4 LINE L1 2933 3011 -3135 * 942 214 0 48 chrX 25255542 25255654 -151718486 + L1M4 LINE L1 3796 3912 -2234 767 158 0 22 chrX 25255654 25255793 -151718347 + L1PA8 LINE L1 6037 6172 0 942 214 0 48 chrX 25255793 25255869 -151718271 + L1M4 LINE L1 3912 3972 -2174 485 70 127 0 chrX 25255869 25255940 -151718200 - MADE1 DNA Mariner 0 80 1 942 214 0 48 chrX 25255940 25255998 -151718142 + L1M4 LINE L1 3972 4031 -2115 1994 128 14 7 chrX 25256019 25256348 -151717792 + AluSx SINE Alu 1 331 0 4935 88 24 15 chrX 25256353 25257025 -151717115 - L1PA12 LINE L1 -15 6153 5476 942 37 0 0 chrX 25257040 25257149 -151716991 - L1PA4 LINE L1 -3 6152 6044 17642 165 27 6 chrX 25257149 25258893 -151715247 - L1PA12 LINE L1 -678 5483 3777 180 0 0 0 chrX 25258893 25258913 -151715227 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 17642 165 27 6 chrX 25258913 25260532 -151713608 - L1PA12 LINE L1 -2384 3777 2059 734 151 9 0 chrX 25260535 25260641 -151713499 - U6 snRNA snRNA 0 107 1 1094 214 48 45 chrX 25260649 25261027 -151713113 + L1M4 LINE L1 4033 4411 -1735 236 269 0 0 chrX 25261027 25261079 -151713061 + Tigger5 DNA MER2_type 4 55 -2268 * 315 235 15 15 chrX 25261048 25261116 -151713024 + Tigger5 DNA MER2_type 2251 2318 -5 470 213 2 0 chrX 25261119 25261220 -151712920 - Tigger5 DNA MER2_type -2235 88 7 502 200 0 0 chrX 25261235 25261320 -151712820 + Tigger5 DNA MER2_type 2239 2323 0 10646 155 23 13 chrX 25261362 25262087 -151712053 - L1P LINE L1 -1723 4423 3707 180 0 0 0 chrX 25262087 25262107 -151712033 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 10646 155 23 13 chrX 25262107 25263726 -151710414 - L1P LINE L1 -2439 3707 2059 687 151 9 0 chrX 25263729 25263835 -151710305 - U6 snRNA snRNA 0 107 1 1032 225 45 42 chrX 25263843 25264221 -151709919 + L1M4 LINE L1 4033 4411 -1735 231 269 0 0 chrX 25264221 25264273 -151709867 + Tigger5 DNA MER2_type 4 55 -2268 * 308 235 15 15 chrX 25264242 25264310 -151709830 + Tigger5 DNA MER2_type 2251 2318 -5 466 213 2 0 chrX 25264313 25264414 -151709726 - Tigger5 DNA MER2_type -2235 88 7 492 200 0 0 chrX 25264429 25264514 -151709626 + Tigger5 DNA MER2_type 2239 2323 0 1794 214 39 19 chrX 25264529 25264997 -151709143 + L1ME1 LINE L1 5671 6147 -19 13577 187 76 13 chrX 25265020 25265549 -151708591 + L1MB3 LINE L1 4 498 -5884 727 201 0 8 chrX 25265549 25265683 -151708457 + FLAM_C SINE Alu 1 133 0 13577 187 76 13 chrX 25265683 25268992 -151705148 + L1MB3 LINE L1 498 4103 -2279 3120 144 20 6 chrX 25268992 25269499 -151704641 + MER75 DNA T2_type 1 514 0 13577 187 76 13 chrX 25269499 25269514 -151704626 + L1MB3 LINE L1 4103 4116 -2266 25961 88 32 20 chrX 25269517 25270023 -151704117 + L1PA7 LINE L1 1338 1836 -4318 2325 90 3 3 chrX 25270023 25270333 -151703807 - AluY SINE Alu -1 310 1 25961 88 32 20 chrX 25270333 25270787 -151703353 + L1PA7 LINE L1 1836 2283 -3871 231 88 0 0 chrX 25270787 25270821 -151703319 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 25961 88 32 20 chrX 25270821 25272457 -151701683 + L1PA7 LINE L1 2283 3898 -2256 2726 16 0 3 chrX 25272457 25272760 -151701380 + AluYa5 SINE Alu 1 302 -9 25961 88 32 20 chrX 25272760 25274920 -151699220 + L1PA7 LINE L1 3898 6154 0 4205 163 12 3 chrX 25274928 25275675 -151698465 + L1MB3 LINE L1 5664 6417 -2 229 292 0 0 chrX 25275723 25275788 -151698352 - MIR SINE MIR -9 253 189 350 219 237 6 chrX 25275806 25275951 -151698189 - MER5A DNA MER1_type 0 189 6 308 258 67 22 chrX 25276882 25276971 -151697169 - L1ME2 LINE L1 0 6164 6072 597 65 103 0 chrX 25276992 25277394 -151696746 + (TA)n Simple_repeat Simple_repeat 1 443 0 455 225 132 61 chrX 25277787 25278068 -151696072 - MLT1H LTR MaLR -214 335 1 771 115 0 16 chrX 25278676 25278798 -151695342 + MER2 DNA MER2_type 88 207 -138 672 245 65 0 chrX 25278875 25279138 -151695002 + L1MD2 LINE L1 2376 2657 -3883 6778 125 7 3 chrX 25279155 25281075 -151693065 - L1PA13 LINE L1 -47 6116 4192 1629 238 14 2 chrX 25281073 25281493 -151692647 + L1MD2 LINE L1 2654 3078 -3462 * 1375 89 0 38 chrX 25281497 25281710 -151692430 - AluY SINE Alu 0 311 107 1783 253 37 9 chrX 25281711 25282363 -151691777 + L1MD2 LINE L1 3070 3739 -2801 4524 226 48 44 chrX 25282410 25283535 -151690605 + L1MD2 LINE L1 4081 5200 -1553 240 86 0 0 chrX 25283535 25283570 -151690570 + (CATA)n Simple_repeat Simple_repeat 2 36 0 4524 226 48 44 chrX 25283570 25285090 -151689050 + L1MD2 LINE L1 5200 6740 -13 2449 70 0 0 chrX 25285288 25285589 -151688551 - AluY SINE Alu -10 301 1 1754 247 80 8 chrX 25285753 25286230 -151687910 - MLT1E2 LTR MaLR 0 626 116 8220 178 50 11 chrX 25286234 25286280 -151687860 - L1MB2 LINE L1 0 6407 6364 2352 90 3 0 chrX 25286280 25286580 -151687560 - AluSp SINE Alu -12 301 1 8220 178 50 11 chrX 25286580 25288991 -151685149 - L1MB2 LINE L1 -43 6364 3844 3733 238 70 21 chrX 25288995 25290006 -151684134 - L1MB2 LINE L1 -2866 3516 2556 1288 115 0 10 chrX 25290006 25290198 -151683942 + L1PA15 LINE L1 5963 6152 -13 3733 238 70 21 chrX 25290198 25291462 -151682678 - L1MB2 LINE L1 -3826 2556 1130 584 280 72 88 chrX 25291684 25292084 -151682056 - L1MB2 LINE L1 -5497 806 413 312 181 352 0 chrX 25292121 25292226 -151681914 - MLT1E2 LTR MaLR -510 144 3 296 274 14 82 chrX 25292230 25292376 -151681764 - MLT1H LTR MaLR -32 517 382 697 253 49 41 chrX 25292406 25292659 -151681481 - MLT1H LTR MaLR -253 296 1 941 265 53 4 chrX 25293389 25293634 -151680506 - MIR SINE MIR 0 262 6 261 57 0 0 chrX 25293638 25293673 -151680467 + (TG)n Simple_repeat Simple_repeat 2 36 0 276 252 52 0 chrX 25293691 25293806 -151680334 + L1ME4a LINE L1 5991 6111 -10 446 280 15 0 chrX 25293903 25294035 -151680105 - MLT1L LTR MaLR -143 472 339 538 243 22 29 chrX 25294361 25294497 -151679643 + MIR3 SINE MIR 40 174 -34 465 34 0 0 chrX 25294867 25294926 -151679214 + (TC)n Simple_repeat Simple_repeat 2 60 0 270 0 0 0 chrX 25294925 25294955 -151679185 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 2282 179 44 2 chrX 25295107 25295514 -151678626 + MSTB1 LTR MaLR 4 427 -5 488 303 96 22 chrX 25297011 25297377 -151676763 + L1ME4a LINE L1 5500 5892 -229 33 43 0 0 chrX 25297648 25297695 -151676445 + AT_rich Low_complexity Low_complexity 1 47 0 321 331 15 7 chrX 25297747 25297883 -151676257 + L1ME LINE L1 5257 5393 -769 315 305 105 0 chrX 25297920 25298084 -151676056 + L1ME LINE L1 5480 5657 -505 311 189 27 45 chrX 25298197 25298308 -151675832 - LTR16A1 LTR ERVL -82 375 267 28 0 0 0 chrX 25298621 25298649 -151675491 + AT_rich Low_complexity Low_complexity 1 28 0 256 233 33 0 chrX 25298860 25298920 -151675220 + L2 LINE L2 3208 3269 -3 568 173 0 23 chrX 25299210 25299343 -151674797 + L1MB7 LINE L1 6037 6166 -18 3784 110 46 5 chrX 25299343 25299943 -151674197 + L1MA5 LINE L1 5662 6295 -5 1954 121 43 67 chrX 25300881 25301254 -151672886 + THE1B LTR MaLR 1 364 0 1554 244 78 17 chrX 25301338 25301801 -151672339 - LTR16C LTR ERVL 0 491 1 453 248 233 48 chrX 25302311 25302521 -151671619 + MIR SINE MIR 2 250 -12 193 384 30 10 chrX 25303724 25303823 -151670317 - L2 LINE L2 -213 3059 2959 437 334 90 17 chrX 25304064 25304408 -151669732 - L1MC4a LINE L1 -1876 5932 5564 957 246 137 23 chrX 25304410 25304797 -151669343 - L2 LINE L2 -3 3310 2880 192 289 66 13 chrX 25304813 25304889 -151669251 + MIR SINE MIR 166 245 -17 652 264 91 54 chrX 25305552 25305865 -151668275 + L1ME LINE L1 5378 5711 -410 2383 140 40 26 chrX 25305865 25306293 -151667847 + Tigger2a DNA MER2_type 1 434 0 652 264 91 54 chrX 25306293 25306385 -151667755 + L1ME LINE L1 5711 5798 -323 3105 182 80 18 chrX 25307325 25307955 -151666185 + L1ME2 LINE L1 5447 6123 -41 2372 151 8 8 chrX 25307955 25308345 -151665795 - MLT1B LTR MaLR 0 390 1 3105 182 80 18 chrX 25308345 25308390 -151665750 + L1ME2 LINE L1 6123 6164 0 945 219 31 10 chrX 25308537 25308729 -151665411 - MIR SINE MIR -55 207 12 211 237 0 0 chrX 25308891 25308929 -151665211 + L2 LINE L2 3254 3291 -22 243 244 49 24 chrX 25309102 25309184 -151664956 - L1ME3A LINE L1 -146 6024 5941 994 198 14 19 chrX 25309189 25309396 -151664744 - MLT1C LTR MaLR -2 465 260 238 143 48 0 chrX 25309382 25309424 -151664716 - MLT1C LTR MaLR -423 44 1 * 236 192 0 0 chrX 25309474 25309526 -151664614 + T-rich Low_complexity Low_complexity 1 52 0 7744 23 0 0 chrX 25309527 25310563 -151663577 - L1PA3 LINE L1 -3 6152 5117 1441 259 32 28 chrX 25310563 25311035 -151663105 - L1ME3A LINE L1 -278 5892 5419 236 268 0 0 chrX 25313376 25313432 -151660708 + MLT1K LTR MaLR 23 78 -471 3934 171 83 16 chrX 25313433 25314207 -151659933 - LTR1B LTR ERV1 0 826 1 555 204 8 30 chrX 25314572 25314704 -151659436 - MIR SINE MIR -87 175 47 534 224 194 6 chrX 25315194 25315359 -151658781 + MIR SINE MIR 12 207 -55 381 252 143 15 chrX 25315362 25315576 -151658564 - MLT1L LTR MaLR -4 606 329 370 264 124 31 chrX 25316432 25316561 -151657579 + MLT1K LTR MaLR 102 242 -346 1373 206 30 99 chrX 25316721 25317124 -151657016 + MLT1B LTR MaLR 1 375 -15 3063 173 68 44 chrX 25317435 25318145 -151655995 - LTR8A LTR ERV1 0 727 1 1985 122 0 4 chrX 25319249 25319528 -151654612 + AluSx SINE Alu 1 278 -34 276 53 0 0 chrX 25319529 25319567 -151654573 + (CA)n Simple_repeat Simple_repeat 1 38 0 228 361 0 24 chrX 25320624 25320707 -151653433 - MER115 DNA AcHobo -612 81 1 1556 213 104 0 chrX 25321200 25321594 -151652546 + Charlie4a DNA MER1_type 74 508 0 475 290 153 61 chrX 25321938 25322362 -151651778 + MLT1K LTR MaLR 126 588 0 303 282 24 0 chrX 25322499 25322584 -151651556 - MIR SINE MIR -122 140 54 502 235 6 6 chrX 25322993 25323159 -151650981 + CT-rich Low_complexity Low_complexity 3 168 0 560 275 64 40 chrX 25323623 25323874 -151650266 - MIR SINE MIR 0 262 6 288 307 95 28 chrX 25324197 25324376 -151649764 + MIR3 SINE MIR 17 207 -1 447 244 165 57 chrX 25324575 25324805 -151649335 + MIR SINE MIR 8 262 0 537 326 102 18 chrX 25324976 25325319 -151648821 - LTR16A LTR ERVL -78 372 1 694 287 77 41 chrX 25326600 25327059 -151647081 - LTR16A1 LTR ERVL -5 452 3 296 299 128 27 chrX 25328531 25328692 -151645448 - MER5A DNA MER1_type -6 174 2 2100 127 9 96 chrX 25328700 25329126 -151645014 - MLT1B LTR MaLR -1 389 1 393 58 0 0 chrX 25329725 25329777 -151644363 + (TC)n Simple_repeat Simple_repeat 2 53 0 916 300 21 4 chrX 25330476 25330716 -151643424 + MIR SINE MIR 19 262 0 361 323 30 12 chrX 25330940 25331104 -151643036 - L2 LINE L2 -234 3038 2872 355 230 27 0 chrX 25332553 25332627 -151641513 + MIR SINE MIR 42 117 -91 25 65 0 0 chrX 25333587 25333633 -151640507 + AT_rich Low_complexity Low_complexity 1 46 0 1142 270 137 42 chrX 25333933 25334071 -151640069 - L1ME4a LINE L1 -27 6094 5971 186 43 0 0 chrX 25334071 25334094 -151640046 + (CA)n Simple_repeat Simple_repeat 1 23 0 1142 270 137 42 chrX 25334094 25334670 -151639470 - L1ME4a LINE L1 -150 5971 5312 2235 99 0 3 chrX 25334787 25335091 -151639049 - AluSx SINE Alu -9 303 1 182 244 24 0 chrX 25335508 25335549 -151638591 - MIR SINE MIR -142 66 25 341 205 26 26 chrX 25335869 25335947 -151638193 - L2 LINE L2 0 3272 3195 225 306 42 0 chrX 25335997 25336069 -151638071 - L2 LINE L2 -221 3051 2977 1034 211 133 31 chrX 25336179 25336473 -151637667 - MER5C DNA MER1_type 0 324 1 370 294 75 12 chrX 25336484 25336644 -151637496 - L2 LINE L2 -1315 1999 1830 470 259 19 22 chrX 25336802 25337001 -151637139 + MIR3 SINE MIR 4 202 -6 528 16 0 0 chrX 25338024 25338085 -151636055 + (CA)n Simple_repeat Simple_repeat 1 61 0 29 0 0 0 chrX 25339111 25339140 -151635000 + AT_rich Low_complexity Low_complexity 1 29 0 323 206 41 27 chrX 25339248 25339321 -151634819 - L2 LINE L2 -2 3270 3197 * 354 299 162 10 chrX 25339320 25339517 -151634623 + MIR SINE MIR 28 254 -8 302 251 205 54 chrX 25340516 25340755 -151633385 - LTR16A1 LTR ERVL -180 277 3 230 293 40 20 chrX 25340763 25340862 -151633278 - MIR SINE MIR -56 206 106 252 59 0 0 chrX 25341122 25341156 -151632984 + (TG)n Simple_repeat Simple_repeat 1 34 0 466 306 16 38 chrX 25341219 25341684 -151632456 + CT-rich Low_complexity Low_complexity 1 454 0 21 0 0 0 chrX 25341920 25341941 -151632199 + GC_rich Low_complexity Low_complexity 1 21 0 182 330 11 43 chrX 25342583 25342677 -151631463 - MIR SINE MIR -55 207 117 236 242 44 77 chrX 25342703 25342794 -151631346 + MER91B DNA MER1_type 1 88 -102 808 252 80 52 chrX 25342979 25343304 -151630836 + MLT1H LTR MaLR 216 549 0 544 239 25 43 chrX 25343505 25343668 -151630472 - MIR SINE MIR -96 166 7 610 216 112 0 chrX 25344080 25344205 -151629935 - MIR SINE MIR -116 146 8 464 269 108 24 chrX 25344788 25344955 -151629185 - MIR SINE MIR -1 261 81 326 291 8 0 chrX 25345337 25345454 -151628686 + (TG)n Simple_repeat Simple_repeat 1 118 0 198 0 0 0 chrX 25346704 25346726 -151627414 + (CTG)n Simple_repeat Simple_repeat 2 23 0 40 0 0 0 chrX 25348465 25348505 -151625635 + AT_rich Low_complexity Low_complexity 1 40 0 668 170 52 7 chrX 25348608 25348743 -151625397 + MER5A DNA MER1_type 1 141 -48 626 261 8 0 chrX 25348907 25349041 -151625099 - LTR16A LTR ERVL -5 445 311 731 279 117 44 chrX 25349055 25349464 -151624676 - L2 LINE L2 -527 2787 2349 201 175 0 0 chrX 25349590 25349630 -151624510 + GA-rich Low_complexity Low_complexity 6 45 0 911 303 24 8 chrX 25349644 25349898 -151624242 - MIR SINE MIR 0 262 5 441 315 14 7 chrX 25349991 25350134 -151624006 - MIR SINE MIR -115 147 4 1363 141 0 23 chrX 25350439 25350659 -151623481 + AluJb SINE Alu 84 298 -14 1024 230 50 0 chrX 25350805 25351027 -151623113 + MLT1E1 LTR MaLR 419 651 -3 2211 246 70 9 chrX 25351076 25351601 -151622539 + MLT1G LTR MaLR 32 588 -2 229 240 27 42 chrX 25351761 25351841 -151622299 - MIR SINE MIR -69 139 72 383 284 0 21 chrX 25353192 25353287 -151620853 - MIR SINE MIR -70 192 100 1050 256 81 77 chrX 25353434 25353965 -151620175 - MLT1H1 LTR MaLR 0 555 23 2008 177 37 8 chrX 25355140 25355519 -151618621 - MLT1B LTR MaLR 0 390 1 2090 116 7 0 chrX 25355863 25356166 -151617974 + AluSc SINE Alu 4 308 -1 584 27 14 0 chrX 25356172 25356246 -151617894 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 271 265 48 36 chrX 25356326 25356409 -151617731 + MIR SINE MIR 63 146 -62 1727 147 3 36 chrX 25356706 25357012 -151617128 - AluJb SINE Alu -6 306 11 321 26 0 0 chrX 25357093 25357131 -151617009 + (TC)n Simple_repeat Simple_repeat 1 38 0 1430 235 121 14 chrX 25357157 25357593 -151616547 + L2 LINE L2 2528 2999 -314 4283 203 48 127 chrX 25357731 25359739 -151614401 - L1MDb LINE L1 -1271 5135 3285 * 30628 53 2 0 chrX 25359724 25365854 -151608286 - L1PA5 LINE L1 0 6154 11 3143 240 28 23 chrX 25365861 25366252 -151607888 - L1MDb LINE L1 -3108 3298 2911 2134 131 0 7 chrX 25366252 25366550 -151607590 + AluSx SINE Alu 1 296 -16 3143 240 28 23 chrX 25366550 25367183 -151606957 - L1MDb LINE L1 -3495 2911 2307 1132 208 23 15 chrX 25367164 25367429 -151606711 - L1MD3 LINE L1 0 7995 7729 * 4239 227 72 23 chrX 25367435 25368941 -151605199 - L1MDb LINE L1 -4104 2302 770 619 321 12 0 chrX 25369528 25369768 -151604372 + L2 LINE L2 2104 2346 -968 1015 265 117 9 chrX 25369768 25370373 -151603767 + L2 LINE L2 2626 3313 0 244 270 0 0 chrX 25371494 25371510 -151602630 - L1MA10 LINE L1 -1 6333 6318 2574 195 102 15 chrX 25371510 25372099 -151602041 - L1ME2 LINE L1 -9 6155 5516 293 265 87 41 chrX 25372343 25372515 -151601625 + MIR SINE MIR 3 181 -58 213 222 128 86 chrX 25372782 25372899 -151601241 + MIR SINE MIR 64 185 -23 286 191 155 0 chrX 25373070 25373154 -151600986 + MIR SINE MIR 100 196 -66 1065 264 77 47 chrX 25373309 25373711 -151600429 - LTR16A LTR ERVL -10 440 27 561 226 8 0 chrX 25373716 25373849 -151600291 + MIR SINE MIR 102 235 -27 2172 181 48 7 chrX 25375473 25375888 -151598252 - MSTB1 LTR MaLR 0 432 1 440 314 96 57 chrX 25376649 25377120 -151597020 - LTR16C LTR ERVL -2 489 1 195 329 76 0 chrX 25377175 25377254 -151596886 - MIR3 SINE MIR -37 171 87 1443 195 137 89 chrX 25377623 25377929 -151596211 + MLT1F1 LTR MaLR 1 369 -198 5738 21 0 5 chrX 25377929 25378579 -151595561 + L1PA3 LINE L1 5509 6155 0 1443 195 137 89 chrX 25378579 25378789 -151595351 + MLT1F1 LTR MaLR 369 567 0 228 241 19 0 chrX 25378847 25378901 -151595239 - MLT1K LTR MaLR -25 563 509 2782 176 11 11 chrX 25379139 25379602 -151594538 + MLT2B1 LTR ERVL 1 466 -54 1049 45 45 0 chrX 25379602 25379759 -151594381 + (TTTC)n Simple_repeat Simple_repeat 4 167 0 2782 176 11 11 chrX 25379759 25379771 -151594369 + MLT2B1 LTR ERVL 465 476 -44 281 175 258 10 chrX 25379771 25379868 -151594272 + MLT2B1 LTR ERVL 400 520 0 297 287 92 37 chrX 25380187 25380351 -151593789 + MIR3 SINE MIR 30 202 -6 207 356 0 26 chrX 25381566 25381681 -151592459 + GA-rich Low_complexity Low_complexity 1 112 0 207 0 0 0 chrX 25381782 25381805 -151592335 + (CAA)n Simple_repeat Simple_repeat 2 24 0 293 110 0 55 chrX 25382414 25382487 -151591653 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 273 325 0 0 chrX 25382571 25382654 -151591486 - L2 LINE L2 -4 3268 3186 350 227 67 50 chrX 25383417 25383536 -151590604 + MLT1J LTR MaLR 1 121 -390 293 300 0 10 chrX 25383890 25383990 -151590150 - LTR33A LTR ERVL -2 521 423 825 266 196 6 chrX 25384029 25384386 -151589754 + LTR16A LTR ERVL 26 450 0 288 286 84 80 chrX 25384586 25384799 -151589341 - LTR33A LTR ERVL -307 216 3 1070 179 0 36 chrX 25384873 25385068 -151589072 + MLT1E LTR MaLR 406 593 0 526 257 14 7 chrX 25385315 25385459 -151588681 - MER5B DNA MER1_type 0 178 34 793 163 31 31 chrX 25385468 25385628 -151588512 - MER96B DNA MER1_type? -8 409 250 720 249 6 40 chrX 25385960 25386133 -151588007 - MER63A DNA MER1_type 0 210 44 275 266 73 33 chrX 25386597 25386748 -151587392 + MIR SINE MIR 52 207 -55 2386 184 55 63 chrX 25387494 25388081 -151586059 + MLT1G LTR MaLR 9 590 0 292 400 0 0 chrX 25388330 25388440 -151585700 - L2 LINE L2 0 3313 3204 1988 206 61 26 chrX 25388454 25388945 -151585195 - Charlie4a DNA MER1_type 0 508 1 1638 196 109 34 chrX 25389003 25389472 -151584668 - MLT1D LTR MaLR 0 505 2 265 317 73 61 chrX 25389512 25390015 -151584125 - L2 LINE L2 -218 3054 2553 591 283 111 31 chrX 25390912 25391114 -151583026 - LTR16C LTR ERVL 0 491 268 2847 115 31 2 chrX 25391114 25391530 -151582610 - MSTA LTR MaLR 0 428 1 591 283 111 31 chrX 25391530 25391553 -151582587 - LTR16C LTR ERVL -223 268 248 * 2438 88 9 12 chrX 25391551 25391881 -151582259 + THE1C LTR MaLR 47 375 0 509 258 120 47 chrX 25391881 25392114 -151582026 - LTR16C LTR ERVL -241 250 1 191 377 33 25 chrX 25394133 25394255 -151579885 + L2 LINE L2 3150 3272 0 436 295 31 8 chrX 25395185 25395314 -151578826 + L2 LINE L2 3141 3272 0 361 289 75 40 chrX 25395691 25395837 -151578303 + LTR33 LTR ERVL 76 215 -306 2265 156 50 79 chrX 25395837 25396028 -151578112 + MLT1D LTR MaLR 1 196 -309 2083 139 0 0 chrX 25396028 25396330 -151577810 + AluSx SINE Alu 1 302 -10 2265 156 50 79 chrX 25396330 25396658 -151577482 + MLT1D LTR MaLR 196 505 0 361 289 75 40 chrX 25396658 25396890 -151577250 + LTR33 LTR ERVL 215 506 -15 613 306 69 51 chrX 25397424 25397816 -151576324 + LTR16C LTR ERVL 93 491 0 1155 188 103 19 chrX 25398344 25398687 -151575453 - MLT1E LTR MaLR -2 591 231 332 119 254 0 chrX 25398684 25398751 -151575389 - MLT1E LTR MaLR -570 84 1 * 1377 179 66 127 chrX 25399305 25399802 -151574338 - MLT1C LTR MaLR 0 467 1 259 292 62 103 chrX 25400105 25400396 -151573744 + L2 LINE L2 2990 3268 -4 577 294 42 49 chrX 25400870 25401138 -151573002 - MLT1H1 LTR MaLR -300 267 1 192 282 97 0 chrX 25401242 25401345 -151572795 + MIR SINE MIR 73 185 -77 667 249 37 32 chrX 25402104 25402293 -151571847 + MIR SINE MIR 73 262 0 870 202 46 63 chrX 25402528 25402660 -151571480 - MIR SINE MIR -1 261 133 1809 191 24 22 chrX 25402660 25403031 -151571109 - MLT1A2 LTR MaLR 0 374 3 870 202 46 63 chrX 25403031 25403136 -151571004 - MIR SINE MIR -129 133 28 1023 228 107 91 chrX 25403203 25403684 -151570456 - MLT1H LTR MaLR -1 548 36 238 185 56 0 chrX 25403759 25403813 -151570327 - MLT1K LTR MaLR -10 578 522 1649 177 16 26 chrX 25403820 25404125 -151570015 + AluJo SINE Alu 1 302 -10 573 279 172 17 chrX 25404245 25404478 -151569662 - MLT1K LTR MaLR -201 387 119 840 202 109 11 chrX 25404485 25404668 -151569472 + MER63A DNA MER1_type 9 209 -1 21 36 0 0 chrX 25404840 25404868 -151569272 + AT_rich Low_complexity Low_complexity 1 28 0 766 278 57 4 chrX 25405046 25405294 -151568846 - MIR SINE MIR 0 262 2 257 129 0 48 chrX 25406552 25406614 -151567526 + (T)n Simple_repeat Simple_repeat 1 59 0 261 180 0 0 chrX 25406935 25406985 -151567155 + (CA)n Simple_repeat Simple_repeat 1 50 0 300 53 0 0 chrX 25407559 25407597 -151566543 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chrX 25407627 25407648 -151566492 + (TG)n Simple_repeat Simple_repeat 1 21 0 221 30 61 0 chrX 25407685 25407718 -151566422 + GA-rich Low_complexity Low_complexity 4 38 0 257 293 37 0 chrX 25408392 25408474 -151565666 - MIR SINE MIR -17 245 161 365 195 39 0 chrX 25408475 25408552 -151565588 - MER116 DNA Mariner 0 80 1 355 238 81 2 chrX 25408552 25408686 -151565454 - MIR SINE MIR -58 150 11 280 345 18 0 chrX 25408705 25408815 -151565325 - MIR SINE MIR -101 161 50 1495 280 67 11 chrX 25409138 25409603 -151564537 - LTR16C LTR ERVL 0 491 1 474 222 196 13 chrX 25410474 25410627 -151563513 + MER5A DNA MER1_type 9 189 0 623 267 10 90 chrX 25411092 25411380 -151562760 + MLT1H LTR MaLR 47 311 -238 284 271 33 25 chrX 25411549 25411671 -151562469 + MIR SINE MIR 111 233 -29 22 0 0 0 chrX 25411680 25411702 -151562438 + AT_rich Low_complexity Low_complexity 1 22 0 1066 259 128 34 chrX 25414210 25414315 -151559825 - MLT1H LTR MaLR 0 549 455 186 71 0 0 chrX 25414315 25414343 -151559797 + (GCTTG)n Simple_repeat Simple_repeat 1 28 0 1066 259 128 34 chrX 25414343 25414739 -151559401 - MLT1H LTR MaLR -94 455 1 249 139 0 0 chrX 25416150 25416193 -151557947 + (TG)n Simple_repeat Simple_repeat 2 44 0 834 269 10 0 chrX 25416729 25416930 -151557210 + MIR SINE MIR 12 214 -48 190 355 140 0 chrX 25417226 25417319 -151556821 - L2 LINE L2 -10 3303 3198 767 215 24 43 chrX 25417429 25417638 -151556502 - L1ME3A LINE L1 -1 6169 5965 1978 237 73 36 chrX 25418262 25418824 -151555316 - MLT1G LTR MaLR 0 590 8 865 254 12 4 chrX 25418833 25419073 -151555067 + MIR SINE MIR 10 251 -11 323 318 108 6 chrX 25419267 25419443 -151554697 - MIR SINE MIR -50 212 19 33 25 0 0 chrX 25419485 25419525 -151554615 + AT_rich Low_complexity Low_complexity 1 40 0 446 334 7 14 chrX 25420155 25420333 -151553807 + MIR3 SINE MIR 20 197 -11 190 348 0 52 chrX 25422603 25422718 -151551422 - MIR SINE MIR -57 151 43 375 327 80 15 chrX 25423455 25423654 -151550486 - L2 LINE L2 0 3272 3061 216 328 56 56 chrX 25424237 25424362 -151549778 + MER5A DNA MER1_type 26 150 -39 1220 224 0 0 chrX 25424576 25424799 -151549341 - MER58A DNA MER1_type 0 224 2 1077 202 5 5 chrX 25424919 25425107 -151549033 - MER5A DNA MER1_type -1 188 1 258 309 99 0 chrX 25425547 25425628 -151548512 + L2 LINE L2 3134 3222 -50 4038 149 66 13 chrX 25425774 25426490 -151547650 + L1MB7 LINE L1 5431 6184 0 817 52 17 0 chrX 25426624 25426739 -151547401 + (TA)n Simple_repeat Simple_repeat 1 117 0 2433 230 63 59 chrX 25428520 25429382 -151544758 - L1ME LINE L1 -5177 893 29 188 241 103 0 chrX 25429799 25429857 -151544283 - MIR SINE MIR -70 192 129 198 150 0 0 chrX 25429965 25430005 -151544135 + (TAA)n Simple_repeat Simple_repeat 2 41 0 276 206 31 194 chrX 25430801 25430899 -151543241 + MIR3 SINE MIR 61 125 -83 761 148 9 0 chrX 25430899 25431014 -151543126 + FLAM_A SINE Alu 1 116 -17 276 206 31 194 chrX 25431014 25431075 -151543065 + MIR3 SINE MIR 125 194 -14 204 179 0 0 chrX 25431900 25431939 -151542201 + GA-rich Low_complexity Low_complexity 2 40 0 314 258 180 16 chrX 25432100 25432226 -151541914 - LTR16C LTR ERVL -73 418 272 1254 216 133 38 chrX 25432226 25432648 -151541492 - MLT1C LTR MaLR 0 467 6 960 270 106 32 chrX 25434012 25434416 -151539724 - MLT1J1 LTR MaLR -11 435 2 825 265 121 30 chrX 25434495 25434716 -151539424 - MLT1H1 LTR MaLR -96 499 300 1469 172 45 26 chrX 25434716 25434824 -151539316 + AluJo SINE Alu 16 120 -192 273 57 0 0 chrX 25434824 25434859 -151539281 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1469 172 45 26 chrX 25434859 25435018 -151539122 + AluJo SINE Alu 120 288 -24 825 265 121 30 chrX 25435018 25435188 -151538952 - MLT1H1 LTR MaLR -295 300 60 2069 177 25 0 chrX 25435188 25435544 -151538596 - MLT1A1 LTR MaLR 0 365 1 825 265 121 30 chrX 25435544 25435576 -151538564 - MLT1H1 LTR MaLR -535 60 32 266 340 60 0 chrX 25435916 25436016 -151538124 + L2 LINE L2 3158 3263 -9 181 316 22 84 chrX 25436213 25436488 -151537652 + L2 LINE L2 73 330 -2984 342 268 108 77 chrX 25436877 25437071 -151537069 + L2 LINE L2 327 526 -2788 2092 188 23 21 chrX 25437122 25437510 -151536630 + MSTB LTR MaLR 38 426 0 1320 278 86 7 chrX 25437528 25437956 -151536184 - LTR16B LTR ERVL -2 462 1 2782 263 104 18 chrX 25437958 25439139 -151535001 + L2 LINE L2 570 1852 -1462 180 0 0 0 chrX 25439493 25439513 -151534627 + (A)n Simple_repeat Simple_repeat 1 20 0 240 351 0 22 chrX 25440150 25440311 -151533829 - MIR SINE MIR -72 190 37 216 0 0 0 chrX 25441128 25441152 -151532988 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chrX 25441658 25441679 -151532461 + AT_rich Low_complexity Low_complexity 1 21 0 864 328 40 9 chrX 25441921 25442247 -151531893 - LTR16C LTR ERVL 0 491 156 5736 123 72 2 chrX 25442465 25443950 -151530190 + L1PBa LINE L1 2056 3649 -3213 617 251 80 12 chrX 25444141 25444304 -151529836 + MER96 DNA MER1_type 2 175 0 368 291 84 63 chrX 25445547 25445760 -151528380 - L2 LINE L2 -471 2843 2623 2357 62 13 13 chrX 25445760 25446067 -151528073 + AluY SINE Alu 1 307 -4 368 291 84 63 chrX 25446067 25446090 -151528050 - L2 LINE L2 -691 2623 2602 182 256 58 35 chrX 25446227 25446313 -151527827 - L2 LINE L2 -919 2395 2308 455 250 0 0 chrX 25446316 25446404 -151527736 - MER81 DNA DNA -21 93 6 219 365 48 24 chrX 25447443 25447569 -151526571 + L2 LINE L2 3144 3272 0 7265 21 1 369 chrX 25447906 25450049 -151524091 + SVA Other Other 47 1409 0 13665 89 5 22 chrX 25450170 25452130 -151522010 - L1P3 LINE L1 -4498 1963 3 6106 111 13 9 chrX 25452131 25453969 -151520171 + L1PA15 LINE L1 4315 6161 -4 470 304 41 23 chrX 25453996 25454262 -151519878 - L1MC4 LINE L1 -223 7819 7549 385 293 60 0 chrX 25454233 25454349 -151519791 - L1MC4a LINE L1 -401 7407 7285 * 1285 275 118 51 chrX 25454356 25455146 -151518994 - L1MEd LINE L1 -4762 1548 615 207 0 0 0 chrX 25455146 25455169 -151518971 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1285 275 118 51 chrX 25455169 25455585 -151518555 - L1MEd LINE L1 -5695 615 228 307 327 32 32 chrX 25455764 25455920 -151518220 + L2 LINE L2 3117 3272 0 204 339 18 9 chrX 25457165 25457274 -151516866 + L2 LINE L2 3127 3236 -36 710 222 93 10 chrX 25457278 25457472 -151516668 + MIR SINE MIR 45 254 -8 267 152 0 0 chrX 25457789 25457835 -151516305 + (CA)n Simple_repeat Simple_repeat 1 46 0 598 337 73 25 chrX 25458146 25458502 -151515638 - LTR16C LTR ERVL 0 491 119 532 264 0 16 chrX 25460069 25460198 -151513942 + MIR SINE MIR 14 140 -122 789 267 43 18 chrX 25460204 25460550 -151513590 - LTR16A LTR ERVL 0 450 66 187 243 131 65 chrX 25460647 25460754 -151513386 + MIR SINE MIR 149 262 0 1568 164 16 32 chrX 25461026 25461337 -151512803 - MLT1B LTR MaLR 0 390 85 500 251 44 22 chrX 25461461 25461644 -151512496 - LTR16A1 LTR ERVL -89 368 182 1421 213 117 66 chrX 25462600 25463098 -151511042 - LTR33A LTR ERVL 0 523 1 1398 212 19 35 chrX 25463168 25463484 -151510656 + MLT1A1 LTR MaLR 55 365 0 558 249 174 9 chrX 25464352 25464565 -151509575 - MIR SINE MIR -3 259 12 510 250 153 51 chrX 25465355 25465571 -151508569 + MLT1L LTR MaLR 6 243 -372 381 315 102 36 chrX 25465759 25466143 -151507997 + L2 LINE L2 2349 2757 -557 275 236 47 28 chrX 25466680 25466786 -151507354 - L1MC5 LINE L1 -48 7913 7806 629 270 91 25 chrX 25466811 25467215 -151506925 + LTR33 LTR ERVL 2 482 -39 5873 222 19 16 chrX 25467277 25468978 -151505162 + L1PA15-16 LINE L1 1901 3607 -3242 1296 165 0 5 chrX 25468981 25469205 -151504935 + L1PA15-16 LINE L1 4812 5034 -1815 25022 87 19 9 chrX 25469219 25473547 -151500593 - L1PA7 LINE L1 -2 6152 1784 4336 155 119 39 chrX 25473547 25474525 -151499615 + pTR5 LTR ERV1 741 2021 -417 389 238 10 0 chrX 25474526 25474627 -151499513 + LTR30 LTR ERV1 541 642 -80 2453 86 0 0 chrX 25474627 25474954 -151499186 + pTR5 LTR ERV1 66 392 -2046 2144 36 0 25 chrX 25474969 25475245 -151498895 + SVA Other Other 1 269 -1117 603 192 154 0 chrX 25475730 25475886 -151498254 - MER5A DNA MER1_type -6 183 4 244 280 38 19 chrX 25477212 25477369 -151496771 + (TCCA)n Simple_repeat Simple_repeat 1 160 0 408 285 24 24 chrX 25477399 25477564 -151496576 + (TCCA)n Simple_repeat Simple_repeat 3 167 0 227 380 108 24 chrX 25477900 25478187 -151495953 - L2 LINE L2 -449 2865 2555 1286 196 30 23 chrX 25478590 25478909 -151495231 - L1MD3 LINE L1 -10 7985 7609 1229 210 122 30 chrX 25479020 25479533 -151494607 - MLT1G LTR MaLR 0 590 7 658 260 70 29 chrX 25479805 25480047 -151494093 + MIR SINE MIR 6 257 -5 1615 183 97 30 chrX 25480858 25481229 -151492911 - MSTD LTR MaLR 0 396 1 201 129 0 0 chrX 25481255 25481286 -151492854 + (CA)n Simple_repeat Simple_repeat 2 32 0 522 264 68 36 chrX 25481823 25482073 -151492067 - MIR SINE MIR 0 262 5 826 305 123 32 chrX 25482073 25482765 -151491375 - L1ME4a LINE L1 -46 6075 5321 424 322 145 8 chrX 25483451 25483830 -151490310 + L2 LINE L2 1930 2360 -954 202 235 20 0 chrX 25484915 25484966 -151489174 - L2 LINE L2 -19 3294 3243 981 293 51 39 chrX 25484966 25485400 -151488740 - LTR16C LTR ERVL 0 491 53 271 148 93 0 chrX 25486068 25486122 -151488018 - LTR33 LTR ERVL -5 516 458 * 911 244 34 38 chrX 25486103 25486394 -151487746 - LTR33 LTR ERVL -182 339 50 2422 147 36 19 chrX 25486394 25486815 -151487325 + MSTA LTR MaLR 1 428 0 2194 127 0 0 chrX 25486860 25487183 -151486957 + MSTA-int LTR MaLR 31 353 -1298 2206 152 6 15 chrX 25487183 25487518 -151486622 + MER1B DNA MER1_type 1 332 -7 7001 182 45 6 chrX 25487518 25488754 -151485386 + MSTA-int LTR MaLR 353 1637 -14 2689 137 31 5 chrX 25488768 25489185 -151484955 + MSTA LTR MaLR 1 428 0 1809 189 122 12 chrX 25489829 25490246 -151483894 - MLT1C LTR MaLR -2 465 3 830 266 92 17 chrX 25490555 25490848 -151483292 - LTR16C LTR ERVL 0 491 177 300 311 59 7 chrX 25490976 25491111 -151483029 - MIR SINE MIR -72 190 49 893 257 55 55 chrX 25492111 25492496 -151481644 - L2 LINE L2 0 3313 2929 301 301 15 45 chrX 25492841 25492974 -151481166 + MIR SINE MIR 28 156 -106 1320 267 88 32 chrX 25493194 25493659 -151480481 - LTR16C LTR ERVL 0 491 1 183 42 0 0 chrX 25495071 25495095 -151479045 + (ATG)n Simple_repeat Simple_repeat 1 24 0 203 222 0 22 chrX 25496165 25496210 -151477930 + MER91 DNA MER1_type 95 138 -2 181 228 70 35 chrX 25496907 25496937 -151477203 + L2 LINE L2 3255 3282 -31 777 129 30 23 chrX 25496937 25497069 -151477071 - FLAM_C SINE Alu 0 133 1 181 228 70 35 chrX 25497069 25497095 -151477045 + L2 LINE L2 3282 3313 0 1095 267 77 18 chrX 25497720 25498121 -151476019 + L1ME3A LINE L1 5657 6081 -89 301 202 24 32 chrX 25499111 25499338 -151474802 + GA-rich Low_complexity Low_complexity 1 225 0 272 244 67 111 chrX 25499943 25500078 -151474062 - MLT1J1 LTR MaLR -57 389 261 254 302 21 21 chrX 25500080 25500176 -151473964 - MER5B DNA MER1_type -78 100 5 1984 170 41 0 chrX 25500295 25500636 -151473504 + MER47A DNA MER2_type 12 366 0 804 249 6 0 chrX 25500636 25500804 -151473336 - MLT1J2 LTR MaLR -274 176 8 2922 52 14 0 chrX 25501206 25501568 -151472572 + L1PA6 LINE L1 5784 6150 -4 297 237 51 34 chrX 25501713 25501831 -151472309 + MER94 DNA DNA 15 134 0 647 247 239 19 chrX 25502962 25503116 -151471024 + MLT1H LTR MaLR 95 214 -335 1460 169 141 44 chrX 25503116 25503477 -151470663 - MSTD LTR MaLR 0 396 1 647 247 239 19 chrX 25503477 25503695 -151470445 + MLT1H LTR MaLR 214 549 0 276 347 10 0 chrX 25503695 25503793 -151470347 - MIR SINE MIR -80 128 30 318 278 30 53 chrX 25504717 25504850 -151469290 + L2 LINE L2 3143 3272 0 843 254 130 56 chrX 25505481 25505859 -151468281 - LTR16C LTR ERVL -6 485 80 814 271 21 106 chrX 25506533 25507005 -151467135 - MLT1J1 LTR MaLR 0 446 15 249 267 213 40 chrX 25507384 25507534 -151466606 + MLT1H LTR MaLR 69 244 -311 414 193 144 20 chrX 25507617 25507780 -151466360 + MLT1H LTR MaLR 368 544 -5 194 342 77 43 chrX 25508001 25508118 -151466022 + L2 LINE L2 3152 3272 0 4821 127 14 9 chrX 25508340 25509121 -151465019 + L1MA6 LINE L1 5512 6296 -4 540 317 92 8 chrX 25509925 25510165 -151463975 + MIR SINE MIR 1 260 -2 37 62 0 0 chrX 25510269 25510334 -151463806 + AT_rich Low_complexity Low_complexity 1 65 0 832 262 35 4 chrX 25510382 25510611 -151463529 - MIR SINE MIR -15 247 12 1077 273 51 96 chrX 25511469 25512095 -151462045 - MLT1L LTR MaLR 0 615 18 207 273 182 0 chrX 25512109 25512197 -151461943 - MIR SINE MIR -118 144 41 244 98 0 39 chrX 25513060 25513111 -151461029 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 474 260 66 51 chrX 25513173 25513369 -151460771 + MLT1J LTR MaLR 3 201 -310 369 276 0 0 chrX 25513413 25513500 -151460640 + LTR16A LTR ERVL 364 450 0 252 319 78 42 chrX 25513593 25513759 -151460381 + MLT1L LTR MaLR 371 542 -73 574 257 36 61 chrX 25513886 25514166 -151459974 - L2 LINE L2 -10 3303 3031 893 280 68 34 chrX 25514418 25514800 -151459340 - L2 LINE L2 -621 2693 2299 1770 237 84 9 chrX 25514807 25515237 -151458903 + LTR16B LTR ERVL 1 462 -2 503 250 127 48 chrX 25515263 25515482 -151458658 - L2 LINE L2 -1050 2264 2009 1589 175 7 34 chrX 25515482 25515779 -151458361 + AluJo SINE Alu 1 289 -23 503 250 127 48 chrX 25515779 25515891 -151458249 - L2 LINE L2 -1305 2009 1907 261 355 73 8 chrX 25515903 25516162 -151457978 - L2 LINE L2 -1838 1476 1201 1764 194 93 11 chrX 25516637 25517002 -151457138 + MLT2D LTR ERVL 1 395 -19 285 139 0 0 chrX 25517041 25517084 -151457056 + MLT2D LTR ERVL 348 390 -7 1985 141 82 70 chrX 25517110 25517537 -151456603 - MSTB1 LTR MaLR 0 432 1 432 208 0 0 chrX 25517642 25517743 -151456397 + (TGGA)n Simple_repeat Simple_repeat 1 101 0 242 320 221 0 chrX 25517764 25517886 -151456254 + MIR SINE MIR 6 154 -108 275 238 38 25 chrX 25517958 25518038 -151456102 + L3 LINE CR1 968 1048 -529 283 173 40 53 chrX 25518367 25518442 -151455698 - MLT1K LTR MaLR -158 430 357 23 33 0 0 chrX 25519617 25519647 -151454493 + AT_rich Low_complexity Low_complexity 1 30 0 1065 275 152 24 chrX 25520159 25520700 -151453440 - MLT1L LTR MaLR -5 610 1 209 351 46 23 chrX 25521563 25521694 -151452446 + L2 LINE L2 3137 3270 -2 602 155 9 0 chrX 25522201 25522317 -151451823 + CT-rich Low_complexity Low_complexity 2 118 0 1066 224 8 13 chrX 25522928 25523165 -151450975 - MIR SINE MIR -25 237 2 3873 141 6 6 chrX 25523313 25523943 -151450197 - L1MA5 LINE L1 -2 6298 5669 633 76 0 0 chrX 25523943 25524022 -151450118 + L1M2 LINE L1 5659 5737 -563 1148 255 23 7 chrX 25524044 25524346 -151449794 + LTR16C LTR ERVL 185 491 0 350 315 26 9 chrX 25524372 25524536 -151449604 - MIR SINE MIR -51 157 33 309 181 32 0 chrX 25524765 25524859 -151449281 + (TA)n Simple_repeat Simple_repeat 1 97 0 205 156 0 0 chrX 25524878 25524910 -151449230 + (TG)n Simple_repeat Simple_repeat 2 33 0 435 253 58 49 chrX 25525002 25525231 -151448909 + MLT1H LTR MaLR 44 304 -245 276 200 110 50 chrX 25525260 25525360 -151448780 + MLT1I LTR MaLR 281 386 -23 23 0 0 0 chrX 25525430 25525453 -151448687 + AT_rich Low_complexity Low_complexity 1 23 0 454 252 84 0 chrX 25525601 25525720 -151448420 - MER94 DNA DNA 0 134 6 234 375 130 3 chrX 25526001 25526302 -151447838 - L2 LINE L2 -511 2803 2465 757 280 44 30 chrX 25526547 25526875 -151447265 + LTR16C LTR ERVL 90 491 0 962 215 13 35 chrX 25526875 25527103 -151447037 + MIR SINE MIR 14 236 -26 553 252 92 11 chrX 25527251 25527496 -151446644 - LTR33A LTR ERVL -14 509 327 399 289 70 40 chrX 25527520 25527721 -151446419 - LTR50 LTR ERVL -569 226 20 417 306 96 0 chrX 25528482 25528639 -151445501 - MIR SINE MIR -71 191 20 11969 180 85 8 chrX 25529083 25533039 -151441101 + L1PBa LINE L1 6 4265 -2597 1208 243 47 137 chrX 25583042 25583930 -151390210 - L1PBb LINE L1 -4967 1236 371 6970 100 8 31 chrX 25584330 25585413 -151388727 + L1P LINE L1 864 1921 -4225 1625 345 26 17 chrX 25585514 25586277 -151387863 - HERV16 LTR ERVL -3429 1567 798 866 161 7 7 chrX 25586287 25586442 -151387698 - LTR32 LTR ERVL 0 471 317 535 210 0 0 chrX 25586494 25586594 -151387546 - LTR32 LTR ERVL -119 352 253 32 0 0 0 chrX 25587485 25587517 -151386623 + AT_rich Low_complexity Low_complexity 1 32 0 2433 61 0 19 chrX 25587543 25587853 -151386287 - AluY SINE Alu -7 304 1 299 330 44 16 chrX 25588633 25588815 -151385325 + MIR SINE MIR 32 218 -44 248 306 12 0 chrX 25589311 25589396 -151384744 - MER94 DNA DNA -10 124 39 512 186 0 93 chrX 25589804 25589933 -151384207 + L2 LINE L2 3197 3313 0 244 186 68 17 chrX 25589927 25589986 -151384154 - MIR SINE MIR -75 133 72 * 382 228 40 79 chrX 25590064 25590266 -151383874 - MIR SINE MIR -3 259 66 291 28 0 0 chrX 25590588 25590624 -151383516 + (TG)n Simple_repeat Simple_repeat 2 37 0 256 272 222 0 chrX 25591414 25591495 -151382645 - L2 LINE L2 -22 3250 3152 2099 153 6 8 chrX 25592069 25592434 -151381706 - L1MA3 LINE L1 0 6305 5942 255 182 0 0 chrX 25592614 25592658 -151381482 + LTR16C LTR ERVL 448 491 0 541 264 104 2 chrX 25593877 25594058 -151380082 + MIR SINE MIR 3 197 -65 195 279 29 0 chrX 25594169 25594237 -151379903 - L2 LINE L2 -208 3064 2995 2278 196 72 52 chrX 25594273 25594859 -151379281 + MLT1G LTR MaLR 13 576 -19 2820 71 3 0 chrX 25595177 25595531 -151378609 + THE1A LTR MaLR 1 355 0 6377 116 60 1 chrX 25595531 25596444 -151377696 + THE1A-int LTR MaLR 1 967 -613 350 232 49 63 chrX 25597385 25597527 -151376613 - MIR3 SINE MIR -34 174 35 2083 177 14 3 chrX 25598173 25598534 -151375606 + MLT1A1 LTR MaLR 1 365 0 250 259 62 37 chrX 25598542 25598623 -151375517 - MIR SINE MIR -167 95 13 258 371 57 28 chrX 25598768 25599016 -151375124 - L2 LINE L2 -337 2977 2723 1293 83 10 21 chrX 25599035 25599227 -151374913 + L1PA14 LINE L1 5963 6152 -9 21 0 0 0 chrX 25599239 25599260 -151374880 + AT_rich Low_complexity Low_complexity 1 21 0 323 232 27 54 chrX 25599361 25599410 -151374730 + L2 LINE L2 3172 3221 -92 2542 118 83 5 chrX 25599410 25599807 -151374333 + MSTA LTR MaLR 1 428 0 323 232 27 54 chrX 25599807 25599869 -151374271 + L2 LINE L2 3221 3280 -33 4593 97 6 13 chrX 25600079 25600710 -151373430 + THE1A-int LTR MaLR 954 1580 0 2623 104 3 3 chrX 25600710 25601065 -151373075 + THE1A LTR MaLR 1 355 0 358 257 46 9 chrX 25601158 25601267 -151372873 + MIR SINE MIR 35 147 -115 2199 126 39 39 chrX 25601677 25602041 -151372099 + THE1B LTR MaLR 1 364 0 406 257 52 22 chrX 25602105 25602241 -151371899 + MER5A DNA MER1_type 1 140 -49 242 235 0 0 chrX 25602369 25602420 -151371720 - LTR33 LTR ERVL 0 521 471 332 140 149 56 chrX 25603079 25603186 -151370954 + L2 LINE L2 3196 3312 -1 2031 112 0 18 chrX 25605226 25605512 -151368628 - AluSx SINE Alu -17 295 15 233 188 0 87 chrX 25605517 25605586 -151368554 - MER5A DNA MER1_type -118 71 9 860 198 0 22 chrX 25605628 25605810 -151368330 + MER5B DNA MER1_type 1 178 0 320 266 184 6 chrX 25606176 25606334 -151367806 - Charlie8 DNA MER1_type -1926 491 306 553 160 9 178 chrX 25606336 25606549 -151367591 - MER69A DNA AcHobo 0 177 1 426 241 0 27 chrX 25606760 25606872 -151367268 + MER5A DNA MER1_type 4 112 -77 223 250 0 0 chrX 25606970 25607022 -151367118 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 217 315 0 22 chrX 25607493 25607582 -151366558 + MIR SINE MIR 16 102 -160 302 308 9 0 chrX 25608640 25608747 -151365393 - MIR3 SINE MIR -32 176 69 231 146 42 42 chrX 25609048 25609096 -151365044 + MER34 LTR ERV1 1 48 -494 617 299 58 18 chrX 25610013 25610287 -151363853 + L3 LINE CR1 1281 1565 -12 323 162 162 27 chrX 25611100 25611174 -151362966 + MLT1C LTR MaLR 6 89 -378 1862 233 32 21 chrX 25611185 25611622 -151362518 - MER70B LTR ERVL -133 445 4 1684 194 65 19 chrX 25611627 25611994 -151362146 + MLT1C LTR MaLR 84 467 0 724 242 138 76 chrX 25612370 25612841 -151361299 + Charlie8 DNA MER1_type 43 542 -1875 464 252 42 125 chrX 25614708 25615059 -151359081 + MLT1I LTR MaLR 98 386 -23 1093 177 0 16 chrX 25615193 25615385 -151358755 + MER5A DNA MER1_type 1 189 0 909 187 12 6 chrX 25615571 25615742 -151358398 + MER5B DNA MER1_type 1 172 -6 255 262 0 0 chrX 25615976 25616037 -151358103 - L2 LINE L2 -2 3270 3210 250 287 57 57 chrX 25616312 25616434 -151357706 + MIR SINE MIR 92 213 -49 2050 132 39 0 chrX 25617794 25618074 -151356066 + AluSx SINE Alu 1 291 -21 1021 254 21 4 chrX 25618161 25618397 -151355743 + MIR SINE MIR 18 257 -5 282 258 106 23 chrX 25619456 25619588 -151354552 - MLT1J LTR MaLR -16 495 353 2233 188 114 2 chrX 25619621 25620158 -151353982 - L1ME2 LINE L1 -15 6149 5553 1484 237 20 12 chrX 25620164 25620510 -151353630 - MLT1J LTR MaLR -162 349 1 259 356 0 0 chrX 25620531 25620618 -151353522 + L2 LINE L2 3173 3259 -13 286 294 25 21 chrX 25622997 25623110 -151351030 - MIR SINE MIR -58 150 45 202 325 150 45 chrX 25623296 25623542 -151350598 - L2 LINE L2 -8 3264 2993 955 229 0 14 chrX 25623672 25623882 -151350258 + MER3 DNA MER1_type 1 207 -2 2355 93 86 67 chrX 25624421 25624462 -151349678 - MSTA LTR MaLR 0 428 389 2021 112 4 4 chrX 25624462 25624739 -151349401 + AluSc SINE Alu 1 277 -32 191 61 30 0 chrX 25624742 25624775 -151349365 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2355 93 86 67 chrX 25624775 25625149 -151348991 - MSTA LTR MaLR -40 388 1 1530 273 54 30 chrX 25625256 25626019 -151348121 + L2 LINE L2 2531 3311 -2 293 231 26 0 chrX 25626020 25626098 -151348042 - L1ME4a LINE L1 -80 6041 5962 2059 145 112 25 chrX 25626727 25627119 -151347021 + MSTA LTR MaLR 3 428 0 380 264 39 60 chrX 25627406 25627588 -151346552 + MLT1K LTR MaLR 383 560 -28 379 336 229 9 chrX 25627945 25628731 -151345409 - L2 LINE L2 -562 2752 1794 986 192 6 28 chrX 25628745 25628927 -151345213 + MER5A DNA MER1_type 12 189 0 1531 246 121 31 chrX 25629401 25629945 -151344195 - MLT1G1 LTR MaLR -2 593 1 218 133 0 22 chrX 25630728 25630773 -151343367 + (TTCTCC)n Simple_repeat Simple_repeat 2 45 0 196 333 90 0 chrX 25631482 25631593 -151342547 + L2 LINE L2 3142 3262 -10 3100 173 23 5 chrX 25631596 25632168 -151341972 + L1MB5 LINE L1 5591 6172 -2 255 237 204 0 chrX 25632236 25632329 -151341811 - MER81 DNA DNA -1 113 2 185 186 116 0 chrX 25632449 25632492 -151341648 - MIR SINE MIR 0 262 215 343 236 112 0 chrX 25632554 25632643 -151341497 - MER5A DNA MER1_type -87 102 4 * 858 210 16 27 chrX 25632643 25632827 -151341313 - MIR SINE MIR -43 219 38 236 189 75 0 chrX 25633365 25633418 -151340722 + MIR SINE MIR 108 164 -98 1825 174 0 29 chrX 25634868 25635178 -151338962 - AluJo SINE Alu -7 305 5 285 75 0 0 chrX 25635242 25635282 -151338858 + (CA)n Simple_repeat Simple_repeat 1 40 0 858 249 48 12 chrX 25636005 25636254 -151337886 + MIR SINE MIR 4 261 -1 618 297 25 127 chrX 25636357 25636815 -151337325 + L3 LINE CR1 159 545 -1032 846 252 133 42 chrX 25636815 25637220 -151336920 - MLT1J1 LTR MaLR 0 446 5 618 297 25 127 chrX 25637220 25637353 -151336787 + L3 LINE CR1 545 690 -887 367 302 12 41 chrX 25637814 25637986 -151336154 + L3 LINE CR1 674 840 -737 665 253 22 0 chrX 25638017 25638199 -151335941 - LTR33 LTR ERVL -4 517 332 257 315 15 46 chrX 25638370 25638500 -151335640 + L3 LINE CR1 1143 1268 -309 323 310 133 19 chrX 25638606 25638764 -151335376 + L2 LINE L2 3096 3271 -1 205 259 17 17 chrX 25638871 25638929 -151335211 + MIR SINE MIR 79 136 -126 275 282 168 0 chrX 25639054 25639203 -151334937 - LTR16C LTR ERVL 0 491 318 1579 122 79 33 chrX 25640042 25640409 -151333731 + MSTB LTR MaLR 1 425 -1 1970 195 21 21 chrX 25640558 25640932 -151333208 + MLT1A2 LTR MaLR 1 374 0 240 184 0 0 chrX 25641139 25641177 -151332963 + MIR SINE MIR 204 241 -21 454 344 63 60 chrX 25641316 25641601 -151332539 - L2 LINE L2 -2 3270 2985 571 216 9 0 chrX 25641629 25641740 -151332400 - MER5A DNA MER1_type -77 112 1 365 326 119 37 chrX 25641745 25642073 -151332067 - L2 LINE L2 -337 2977 2623 923 215 61 16 chrX 25642500 25642747 -151331393 + MIR SINE MIR 4 261 -1 604 246 10 68 chrX 25643198 25643405 -151330735 + LTR16A1 LTR ERVL 251 445 -12 343 158 34 57 chrX 25643913 25644090 -151330050 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 * 359 227 12 12 chrX 25644060 25644232 -151329908 + GA-rich Low_complexity Low_complexity 1 172 0 192 213 0 0 chrX 25644267 25644328 -151329812 + GA-rich Low_complexity Low_complexity 2 62 0 826 232 109 25 chrX 25645842 25646328 -151327812 + MLT1G1 LTR MaLR 1 567 0 2010 124 0 4 chrX 25646367 25646633 -151327507 + AluSx SINE Alu 33 297 -15 245 252 14 28 chrX 25646789 25646932 -151327208 + CT-rich Low_complexity Low_complexity 3 143 0 434 215 11 28 chrX 25646964 25647141 -151326999 + CT-rich Low_complexity Low_complexity 4 177 0 531 195 0 53 chrX 25647154 25647344 -151326796 + CT-rich Low_complexity Low_complexity 1 180 0 373 241 103 42 chrX 25647849 25648017 -151326123 - MLT1G LTR MaLR -6 617 403 895 241 17 69 chrX 25648143 25648491 -151325649 - MLT1G LTR MaLR -260 330 1 615 291 37 0 chrX 25648726 25648915 -151325225 + Charlie8 DNA MER1_type 76 271 -2146 230 262 12 0 chrX 25649202 25649286 -151324854 + CT-rich Low_complexity Low_complexity 2 86 0 250 26 51 0 chrX 25649843 25649882 -151324258 + (TC)n Simple_repeat Simple_repeat 2 42 0 466 345 6 0 chrX 25650605 25650782 -151323358 + (TG)n Simple_repeat Simple_repeat 2 179 0 389 272 16 40 chrX 25651292 25651417 -151322723 + MIR SINE MIR 87 208 -54 220 217 0 0 chrX 25651889 25651935 -151322205 + MIR SINE MIR 150 195 -67 843 255 74 0 chrX 25652653 25652884 -151321256 + MIR SINE MIR 8 255 -7 6434 127 31 14 chrX 25653147 25654123 -151320017 - L1MA9 LINE L1 0 6312 5285 2482 83 0 0 chrX 25654123 25654425 -151319715 - AluSx SINE Alu -10 302 1 6434 127 31 14 chrX 25654425 25654846 -151319294 - L1MA9 LINE L1 -1027 5285 4873 214 297 0 27 chrX 25654853 25654927 -151319213 + L2 LINE L2 2914 2985 -287 802 279 14 70 chrX 25654945 25655358 -151318782 + LTR16B LTR ERVL 1 390 -74 255 280 67 150 chrX 25655413 25655713 -151318427 + L2 LINE L2 2998 3272 0 863 19 0 9 chrX 25657394 25657500 -151316640 + (CTATT)n Simple_repeat Simple_repeat 4 108 0 284 345 111 18 chrX 25658358 25658524 -151315616 - LTR67 LTR ERVL -267 290 109 1055 242 67 25 chrX 25658524 25658809 -151315331 - LTR16C LTR ERVL 0 491 195 303 49 0 0 chrX 25659503 25659544 -151314596 + (T)n Simple_repeat Simple_repeat 1 41 0 1307 255 18 12 chrX 25659700 25660037 -151314103 - LTR16A LTR ERVL -96 354 16 474 285 45 6 chrX 25660176 25660347 -151313793 - MIR SINE MIR -62 146 4 680 234 66 18 chrX 25660347 25660514 -151313626 - MER96 DNA MER1_type 0 175 1 642 294 41 32 chrX 25661915 25662259 -151311881 - MLT1I LTR MaLR 0 450 59 398 271 32 48 chrX 25662676 25662864 -151311276 + MLT1J2 LTR MaLR 266 450 0 206 69 0 0 chrX 25662866 25662895 -151311245 + L2 LINE L2 3243 3271 -1 814 128 88 20 chrX 25663875 25664023 -151310117 + MER6B DNA MER2_type 3 160 -50 1543 209 0 6 chrX 25664110 25664421 -151309719 + AluJb SINE Alu 1 309 -3 2112 123 0 0 chrX 25664586 25664886 -151309254 + AluSx SINE Alu 2 301 -11 787 302 38 38 chrX 25665431 25665799 -151308341 - LTR16A LTR ERVL -82 368 1 326 283 116 17 chrX 25665998 25666171 -151307969 - L2 LINE L2 -4 3309 3120 672 313 83 0 chrX 25666234 25666464 -151307676 - MIR SINE MIR -13 249 1 1581 187 79 97 chrX 25666688 25666752 -151307388 - LTR16C LTR ERVL -34 457 393 2192 96 3 0 chrX 25666752 25667043 -151307097 - AluSc SINE Alu -17 292 1 1581 187 79 97 chrX 25667043 25667433 -151306707 - LTR16C LTR ERVL -98 393 11 1397 168 9 8 chrX 25667499 25667946 -151306194 + MLT1D LTR MaLR 1 505 0 276 286 0 0 chrX 25668563 25668626 -151305514 + MIR SINE MIR 68 130 -78 535 285 26 36 chrX 25670428 25670621 -151303519 + MLT1H LTR MaLR 346 536 -13 560 282 92 23 chrX 25670908 25671082 -151303058 - MIR3 SINE MIR -3 205 20 391 286 8 8 chrX 25671116 25671235 -151302905 + MER117 DNA MER1_type 39 157 -40 229 261 23 80 chrX 25671837 25671925 -151302215 + L2 LINE L2 2995 3077 -195 1028 218 61 19 chrX 25671957 25672269 -151301871 - HsTC2 DNA Tc2 -3 1895 1571 220 395 19 6 chrX 25672657 25672819 -151301321 - L2 LINE L2 -527 2787 2624 1661 171 17 10 chrX 25672829 25673128 -151301012 + AluJo SINE Alu 1 301 -11 247 242 48 16 chrX 25673848 25673910 -151300230 - MLT1J LTR MaLR -211 300 237 689 327 46 31 chrX 25673925 25674313 -151299827 - LTR16C LTR ERVL -2 489 96 297 254 47 89 chrX 25674592 25674761 -151299379 - MIR3 SINE MIR -4 204 43 307 267 85 22 chrX 25675978 25676138 -151298002 + MIR SINE MIR 3 178 -63 472 296 34 28 chrX 25676523 25676699 -151297441 - MIR SINE MIR -79 183 7 353 218 56 84 chrX 25676826 25676968 -151297172 - MLT1H LTR MaLR -2 547 410 322 235 54 27 chrX 25677064 25677201 -151296939 - MLT1I LTR MaLR -267 142 79 269 252 147 28 chrX 25677363 25677504 -151296636 - MER2 DNA MER2_type -3 342 185 1287 131 19 0 chrX 25677504 25677710 -151296430 + MER2 DNA MER2_type 1 210 -135 345 310 205 0 chrX 25678248 25678419 -151295721 + MIR SINE MIR 38 243 -19 772 117 39 126 chrX 25678909 25679115 -151295025 - MER53 DNA DNA -1 188 1 1107 253 65 30 chrX 25679196 25679425 -151294715 - LTR16C LTR ERVL -39 452 204 1669 212 16 26 chrX 25679425 25679803 -151294337 - MLT1A2 LTR MaLR 0 374 1 1107 253 65 30 chrX 25679803 25679940 -151294200 - LTR16C LTR ERVL -287 204 73 262 165 33 22 chrX 25680237 25680328 -151293812 + GA-rich Low_complexity Low_complexity 2 93 0 1139 262 104 116 chrX 25680381 25680945 -151293195 - L2 LINE L2 -2 3311 2742 665 147 9 17 chrX 25680945 25681061 -151293079 + FLAM_A SINE Alu 10 124 -18 1139 262 104 116 chrX 25681061 25681686 -151292454 - L2 LINE L2 -571 2742 2001 3346 56 9 25 chrX 25681691 25681761 -151292379 + L1PA5 LINE L1 5717 5787 -367 2342 91 0 0 chrX 25681761 25682069 -151292071 + AluY SINE Alu 1 308 -3 3346 56 9 25 chrX 25682069 25682441 -151291699 + L1PA5 LINE L1 5787 6152 -2 378 91 0 0 chrX 25683121 25683176 -151290964 + (CA)n Simple_repeat Simple_repeat 1 55 0 198 103 0 0 chrX 25683177 25683206 -151290934 + (CACCAT)n Simple_repeat Simple_repeat 3 31 0 227 348 52 9 chrX 25683824 25683939 -151290201 + MIR SINE MIR 17 136 -72 1061 219 40 28 chrX 25683989 25684236 -151289904 + MIR SINE MIR 2 251 -11 317 169 34 17 chrX 25684276 25684335 -151289805 - MLT1C LTR MaLR 0 467 408 195 42 0 0 chrX 25684486 25684510 -151289630 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 262 326 78 85 chrX 25684534 25684708 -151289432 - L2 LINE L2 -50 3222 3049 1607 219 105 44 chrX 25684708 25685184 -151288956 + MLT1J LTR MaLR 5 509 -2 262 326 78 85 chrX 25685184 25685316 -151288824 - L2 LINE L2 -223 3049 2918 200 270 0 10 chrX 25685433 25685533 -151288607 + CT-rich Low_complexity Low_complexity 4 102 0 363 167 322 0 chrX 25685560 25685650 -151288490 - L2 LINE L2 -15 3298 3180 374 358 80 7 chrX 25685700 25685988 -151288152 + LTR16A LTR ERVL 1 309 -141 489 319 178 32 chrX 25685998 25686639 -151287501 - L2 LINE L2 -320 2952 2196 1753 173 13 0 chrX 25686741 25687048 -151287092 - AluJo SINE Alu -1 311 1 204 244 0 0 chrX 25687376 25687417 -151286723 + L2 LINE L2 3230 3270 -2 242 333 12 12 chrX 25687460 25687541 -151286599 - L3b LINE CR1 -246 1337 1257 189 286 0 0 chrX 25687775 25687824 -151286316 - L3b LINE CR1 -375 1208 1160 273 268 170 60 chrX 25689511 25689746 -151284394 + L2 LINE L2 2456 2716 -598 252 222 74 44 chrX 25689751 25689886 -151284254 + L2 LINE L2 2817 2955 -317 253 191 48 32 chrX 25689931 25689994 -151284146 + MLT1H LTR MaLR 469 532 -17 1196 330 65 14 chrX 25690022 25690541 -151283599 + MLT1K LTR MaLR 43 588 0 259 336 64 7 chrX 25691148 25691288 -151282852 + MARNA DNA Mariner 29 176 -410 271 220 66 110 chrX 25691880 25692062 -151282078 + MER3 DNA MER1_type 36 209 0 * 1108 168 0 39 chrX 25692062 25692109 -151282031 - MER3 DNA MER1_type -170 39 1 447 258 63 38 chrX 25692124 25692283 -151281857 + MIR SINE MIR 57 219 -43 1868 249 111 11 chrX 25692887 25693428 -151280712 + MLT1G1 LTR MaLR 1 595 0 2187 106 3 0 chrX 25693697 25693999 -151280141 + AluSx SINE Alu 3 305 -7 494 181 138 0 chrX 25695080 25695174 -151278966 - LTR16C LTR ERVL 0 491 385 1846 157 39 137 chrX 25695176 25695652 -151278488 - MLT2D LTR ERVL -2 513 1 1388 294 23 13 chrX 25695652 25696036 -151278104 - LTR16C LTR ERVL -102 389 2 592 270 70 97 chrX 25696340 25696837 -151277303 + MLT1J LTR MaLR 25 508 -3 327 242 174 8 chrX 25696879 25697011 -151277129 + L2 LINE L2 3160 3313 0 566 255 87 3 chrX 25697135 25697317 -151276823 + MIR SINE MIR 2 203 -59 601 330 29 43 chrX 25697589 25698032 -151276108 + L1ME2 LINE L1 5448 5884 -280 224 204 0 74 chrX 25698351 25698405 -151275735 + L2 LINE L2 3263 3312 -1 1759 181 143 10 chrX 25698525 25698939 -151275201 + Charlie4a DNA MER1_type 39 507 -1 248 279 15 0 chrX 25699118 25699186 -151274954 + A-rich Low_complexity Low_complexity 2 70 0 1633 255 59 25 chrX 25699616 25700087 -151274053 - LTR16C LTR ERVL -3 488 2 410 314 63 11 chrX 25700187 25700362 -151273778 + Charlie8 DNA MER1_type 1 184 -2233 1099 228 16 20 chrX 25701439 25701689 -151272451 + MIR SINE MIR 14 262 0 757 298 18 6 chrX 25702957 25703200 -151270940 + MIR SINE MIR 17 262 0 231 170 0 0 chrX 25703349 25703396 -151270744 + (CA)n Simple_repeat Simple_repeat 1 47 0 310 215 15 0 chrX 25704204 25704269 -151269871 - L2 LINE L2 -1 3312 3247 779 278 71 40 chrX 25704343 25704793 -151269347 + LTR16B LTR ERVL 1 464 0 203 240 80 27 chrX 25705083 25705158 -151268982 - MIR SINE MIR -1 261 183 317 274 0 0 chrX 25705679 25705760 -151268380 + MIR SINE MIR 73 153 -55 284 156 167 0 chrX 25705804 25705874 -151268266 + MER5A DNA MER1_type 4 87 -102 1039 286 94 51 chrX 25706699 25707168 -151266972 + MLT1J LTR MaLR 9 497 -14 917 295 21 0 chrX 25707202 25707443 -151266697 - LTR16A LTR ERVL -6 444 199 201 239 134 0 chrX 25707443 25707510 -151266630 + MIR SINE MIR 112 187 -75 289 299 0 0 chrX 25707820 25707897 -151266243 + L2 LINE L2 3194 3270 -2 1737 98 0 0 chrX 25707982 25708218 -151265922 - AluSg/x SINE Alu -5 305 70 253 323 11 21 chrX 25708240 25708333 -151265807 + MIR SINE MIR 100 191 -71 1072 217 44 9 chrX 25708985 25709211 -151264929 + MIR SINE MIR 10 243 -19 393 230 42 164 chrX 25709743 25709956 -151264184 - MLT1K LTR MaLR -196 392 206 349 321 30 15 chrX 25713036 25713167 -151260973 + MIR SINE MIR 32 164 -98 380 189 159 0 chrX 25713472 25713589 -151260551 + MIR SINE MIR 45 185 -77 303 198 86 12 chrX 25713768 25713849 -151260291 - MLT1K LTR MaLR 0 588 502 1419 228 37 26 chrX 25713925 25714306 -151259834 + LTR16C LTR ERVL 107 491 0 374 238 0 0 chrX 25714314 25714394 -151259746 - MLT1K LTR MaLR -110 478 399 467 301 9 0 chrX 25714904 25715017 -151259123 - MER81 DNA DNA 0 114 1 559 274 44 69 chrX 25715155 25715409 -151258731 + L1ME3 LINE L1 5583 5827 -294 1513 239 88 37 chrX 25715409 25715874 -151258266 - LTR16C LTR ERVL 0 491 3 559 274 44 69 chrX 25715874 25715980 -151258160 + L1ME3 LINE L1 5827 5934 -187 843 243 156 0 chrX 25716222 25716510 -151257630 - MER46C DNA MER2_type -1 337 5 333 216 27 14 chrX 25716734 25716808 -151257332 - MER5A DNA MER1_type -106 83 9 687 173 15 63 chrX 25717224 25717413 -151256727 + L1ME3 LINE L1 5988 6170 0 699 276 145 13 chrX 25717803 25718114 -151256026 + MLT1J LTR MaLR 149 500 -11 1138 231 151 41 chrX 25718283 25718768 -151255372 + MLT1H LTR MaLR 12 549 0 482 279 138 41 chrX 25719922 25720291 -151253849 + MLT1I LTR MaLR 5 409 0 2127 113 6 53 chrX 25720428 25720746 -151253394 + AluSx SINE Alu 1 303 -9 598 201 37 37 chrX 25722570 25722759 -151251381 + MER53 DNA DNA 1 189 0 801 230 85 5 chrX 25723933 25724133 -151250007 - LTR16C LTR ERVL 0 491 276 887 161 175 84 chrX 25724134 25724348 -151249792 - MER5C DNA MER1_type -1 323 75 1808 124 26 4 chrX 25724348 25724613 -151249527 - AluSx SINE Alu -9 303 33 887 161 175 84 chrX 25724613 25724684 -151249456 - MER5C DNA MER1_type -249 75 12 229 235 224 0 chrX 25724684 25724769 -151249371 - LTR16C LTR ERVL -213 278 175 189 229 0 0 chrX 25725302 25725337 -151248803 - MIR SINE MIR -137 71 37 350 263 9 61 chrX 25725349 25725463 -151248677 + MIR SINE MIR 105 212 -50 824 245 19 77 chrX 25725593 25725886 -151248254 + L1MC4 LINE L1 7640 7949 -93 351 0 0 0 chrX 25725886 25725925 -151248215 + (CA)n Simple_repeat Simple_repeat 2 40 0 824 245 19 77 chrX 25725925 25725965 -151248175 + L1MC4 LINE L1 7949 7990 -52 1804 151 27 3 chrX 25725965 25726263 -151247877 + AluJb SINE Alu 1 305 -7 824 245 19 77 chrX 25726263 25726356 -151247784 + L1MC4 LINE L1 7990 8042 0 3688 102 28 4 chrX 25726530 25727070 -151247070 - L1PB3 LINE L1 -2 6152 5600 968 283 111 11 chrX 25727638 25727988 -151246152 + MLT1L LTR MaLR 230 614 -1 307 294 37 18 chrX 25728212 25728321 -151245819 + MER5A DNA MER1_type 7 117 -72 370 308 57 64 chrX 25729074 25729529 -151244611 + LTR67 LTR ERVL 97 548 -9 1162 244 181 26 chrX 25729605 25730064 -151244076 - L1ME3A LINE L1 -111 6059 5530 259 263 298 0 chrX 25730544 25730658 -151243482 - MER96 DNA MER1_type? 0 175 28 397 287 140 6 chrX 25730671 25730835 -151243305 + MIR SINE MIR 75 260 -2 245 269 0 0 chrX 25731471 25731523 -151242617 + polypyrimidine Low_complexity Low_complexity 1 52 0 1023 193 44 62 chrX 25731582 25731970 -151242170 - L1MC5 LINE L1 -30 7931 7551 467 230 161 62 chrX 25732806 25732871 -151241269 + MER5A DNA MER1_type 7 64 -125 1556 167 21 28 chrX 25732871 25733158 -151240982 + AluJo SINE Alu 21 305 -7 467 230 161 62 chrX 25733158 25733253 -151240887 + MER5A DNA MER1_type 64 183 -6 824 290 41 8 chrX 25735124 25735222 -151238918 + MIR SINE MIR 8 101 -161 1110 273 91 26 chrX 25735222 25735683 -151238457 + LTR16C LTR ERVL 1 491 0 824 290 41 8 chrX 25735683 25735829 -151238311 + MIR SINE MIR 101 260 -2 219 69 0 0 chrX 25736431 25736460 -151237680 + (T)n Simple_repeat Simple_repeat 1 29 0 298 233 0 0 chrX 25736584 25736657 -151237483 - MLT1F LTR MaLR -16 579 507 372 235 85 40 chrX 25736702 25736926 -151237214 - MLT1F LTR MaLR -169 373 112 1485 223 50 55 chrX 25737302 25737778 -151236362 - MLT1K LTR MaLR -2 474 1 688 179 22 8 chrX 25738591 25738725 -151235415 - LTR16A LTR ERVL -172 278 143 692 249 6 12 chrX 25740034 25740199 -151233941 + MER5B DNA MER1_type 4 167 -11 230 235 7 140 chrX 25740201 25740337 -151233803 - MLT1H LTR MaLR 0 549 432 312 250 57 48 chrX 25740494 25740620 -151233520 - MLT1H LTR MaLR -264 162 51 421 260 58 45 chrX 25740757 25740911 -151233229 + MIR SINE MIR 50 205 -57 708 261 82 33 chrX 25741306 25741636 -151232504 + LTR16A LTR ERVL 105 450 0 2409 98 0 13 chrX 25744964 25745281 -151228859 - AluSq SINE Alu 0 313 1 345 246 82 49 chrX 25745424 25745546 -151228594 + MIR SINE MIR 84 209 -53 180 152 0 0 chrX 25745818 25745851 -151228289 + (TG)n Simple_repeat Simple_repeat 1 33 0 304 185 62 0 chrX 25747097 25747162 -151226978 + MIR SINE MIR 30 98 -110 600 267 104 9 chrX 25747279 25747500 -151226640 + MLT1H LTR MaLR 4 245 -304 223 288 0 61 chrX 25747736 25747802 -151226338 - L2 LINE L2 0 3272 3211 214 244 0 0 chrX 25748054 25748099 -151226041 + GA-rich Low_complexity Low_complexity 3 47 0 256 198 0 74 chrX 25748117 25748198 -151225942 - HsTC2 DNA Tc2 -1819 79 5 2247 124 0 0 chrX 25748282 25748581 -151225559 + AluSx SINE Alu 1 299 -13 2618 161 42 46 chrX 25750776 25750854 -151223286 - MLT2B1 LTR ERVL -2 518 441 195 42 0 0 chrX 25750854 25750878 -151223262 + (TAGA)n Simple_repeat Simple_repeat 2 25 0 2618 161 42 46 chrX 25750878 25751319 -151222821 - MLT2B1 LTR ERVL -79 441 1 331 235 0 37 chrX 25751729 25751810 -151222330 - L2 LINE L2 -1 3312 3235 237 254 159 29 chrX 25751827 25751965 -151222175 - LTR67 LTR ERVL -19 538 383 271 318 91 98 chrX 25752221 25752485 -151221655 - L2 LINE L2 -71 3201 2940 720 228 138 0 chrX 25752671 25752860 -151221280 - MIR SINE MIR 0 262 48 1651 217 33 8 chrX 25752943 25753335 -151220805 + LTR16C LTR ERVL 54 455 -36 2317 146 0 32 chrX 25753858 25754235 -151219905 + MLT1A1 LTR MaLR 1 365 0 1809 242 78 43 chrX 25754236 25754811 -151219329 + MLT1G1 LTR MaLR 1 595 0 439 232 64 16 chrX 25755667 25755792 -151218348 + MIR SINE MIR 68 198 -64 1242 263 140 18 chrX 25756169 25756680 -151217460 + L2 LINE L2 2741 3313 0 276 219 0 0 chrX 25756805 25756887 -151217253 + (CA)n Simple_repeat Simple_repeat 1 82 0 180 228 0 0 chrX 25756958 25757015 -151217125 + (CA)n Simple_repeat Simple_repeat 2 58 0 192 266 0 0 chrX 25757064 25757173 -151216967 + (CA)n Simple_repeat Simple_repeat 2 110 0 2315 107 7 0 chrX 25757216 25757526 -151216614 - AluSx SINE Alu 0 312 1 222 331 97 55 chrX 25757543 25757688 -151216452 + L2 LINE L2 2890 3040 -232 1177 211 65 12 chrX 25757689 25757936 -151216204 + MIR SINE MIR 2 261 -1 373 347 8 0 chrX 25758168 25758289 -151215851 + MIR3 SINE MIR 87 208 0 429 301 102 11 chrX 25758400 25758576 -151215564 - MIR3 SINE MIR -3 205 14 618 313 62 0 chrX 25758733 25758928 -151215212 - MIR SINE MIR -13 249 43 307 260 0 40 chrX 25759171 25759271 -151214869 - MLT1H LTR MaLR 0 549 454 506 278 78 31 chrX 25759365 25759620 -151214520 - MLT1H LTR MaLR -270 279 13 315 343 98 0 chrX 25760430 25760573 -151213567 + MIR SINE MIR 105 261 -1 288 161 0 0 chrX 25760710 25760772 -151213368 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 266 298 57 24 chrX 25760774 25760898 -151213242 - L2 LINE L2 0 3313 3186 436 304 58 38 chrX 25760920 25761236 -151212904 - L3 LINE CR1 -9 1568 1173 2055 149 13 43 chrX 25761500 25761875 -151212265 + THE1B LTR MaLR 1 364 0 1088 258 99 21 chrX 25762076 25762499 -151211641 + LTR16C LTR ERVL 6 461 -30 257 68 14 68 chrX 25762632 25762705 -151211435 + (TC)n Simple_repeat Simple_repeat 1 69 0 300 179 36 32 chrX 25762710 25762967 -151211173 + CT-rich Low_complexity Low_complexity 1 258 0 248 143 40 46 chrX 25763015 25763190 -151210950 + CT-rich Low_complexity Low_complexity 1 174 0 23 0 0 0 chrX 25763714 25763737 -151210403 + AT_rich Low_complexity Low_complexity 1 23 0 183 206 164 14 chrX 25764055 25764128 -151210012 - MIR SINE MIR -10 252 169 659 251 111 5 chrX 25764132 25764339 -151209801 - MIR SINE MIR -6 256 28 604 262 75 26 chrX 25764410 25764677 -151209463 - LTR16A1 LTR ERVL -17 440 161 414 0 0 0 chrX 25765202 25765248 -151208892 + (CA)n Simple_repeat Simple_repeat 1 46 0 195 100 0 0 chrX 25765271 25765301 -151208839 + (TC)n Simple_repeat Simple_repeat 2 31 0 225 0 0 0 chrX 25765301 25765326 -151208814 + (CA)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chrX 25765705 25765735 -151208405 + AT_rich Low_complexity Low_complexity 1 30 0 1833 248 31 31 chrX 25765881 25766454 -151207686 + L1ME3A LINE L1 5589 6161 -9 30564 101 21 62 chrX 25768993 25770961 -151203179 + L1PA6 LINE L1 13 2059 -4095 2385 90 0 3 chrX 25770961 25771261 -151202879 + AluY SINE Alu 1 299 -12 30564 101 21 62 chrX 25771261 25775704 -151198436 + L1PA6 LINE L1 2059 6154 0 7082 59 5 1 chrX 25775707 25776842 -151197298 + L1PA7 LINE L1 5002 6139 -15 264 200 0 0 chrX 25776842 25776902 -151197238 + (TA)n Simple_repeat Simple_repeat 1 60 0 287 255 28 47 chrX 25776960 25777066 -151197074 - MIR3 SINE MIR -7 201 98 194 240 195 65 chrX 25777054 25777208 -151196932 - MIR SINE MIR -3 259 86 * 731 231 26 163 chrX 25777593 25778122 -151196018 - LTR16A1 LTR ERVL 0 457 1 489 271 71 29 chrX 25778692 25778832 -151195308 - L2 LINE L2 -5 3267 3122 1632 233 93 13 chrX 25778947 25779397 -151194743 + MLT1J LTR MaLR 19 504 -7 514 333 90 24 chrX 25779570 25779825 -151194315 + LTR16A LTR ERVL 25 296 -154 772 278 22 45 chrX 25779952 25780265 -151193875 + LTR16A LTR ERVL 145 450 0 342 358 0 0 chrX 25780509 25780640 -151193500 + MIR SINE MIR 24 153 -72 1263 188 18 5 chrX 25780672 25780890 -151193250 + MER58A DNA MER1_type 1 221 -3 1640 266 58 25 chrX 25780951 25781067 -151193073 - L2 LINE L2 -1 3312 3201 1732 184 97 27 chrX 25781067 25781437 -151192703 + MSTD LTR MaLR 1 396 0 1640 266 58 25 chrX 25781437 25782084 -151192056 - L2 LINE L2 -112 3201 2512 285 240 53 0 chrX 25782386 25782461 -151191679 + L2 LINE L2 2671 2749 -565 975 249 170 25 chrX 25782473 25782915 -151191225 + MLT1H1 LTR MaLR 50 555 0 268 385 73 4 chrX 25784508 25784742 -151189398 + L2 LINE L2 2811 3060 -212 384 232 11 0 chrX 25784822 25784917 -151189223 - LTR16C LTR ERVL -8 483 388 191 437 63 7 chrX 25785178 25785320 -151188820 + L2 LINE L2 3122 3271 -1 201 258 15 15 chrX 25785733 25785799 -151188341 + L2 LINE L2 2821 2886 -427 1157 234 75 51 chrX 25785799 25786252 -151187888 + MLT1C LTR MaLR 1 372 -2 1444 243 25 54 chrX 25786252 25786697 -151187443 + L2 LINE L2 2882 3313 0 514 306 104 10 chrX 25786755 25786948 -151187192 - MIR SINE MIR -48 214 4 369 0 0 0 chrX 25787079 25787120 -151187020 + (TG)n Simple_repeat Simple_repeat 1 41 0 294 73 0 0 chrX 25787122 25787163 -151186977 + (GA)n Simple_repeat Simple_repeat 2 42 0 779 264 58 39 chrX 25787353 25787735 -151186405 + LTR16C LTR ERVL 64 452 -39 183 310 92 23 chrX 25787751 25787838 -151186302 - L2 LINE L2 -26 3246 3154 201 261 31 31 chrX 25788091 25788156 -151185984 - L2 LINE L2 -36 3236 3172 478 418 45 16 chrX 25789563 25789872 -151184268 - L2 LINE L2 0 3272 2955 1712 174 37 6 chrX 25789912 25790233 -151183907 - MSTB LTR MaLR 0 426 96 1788 171 33 6 chrX 25790335 25790669 -151183471 - MSTB LTR MaLR -83 343 1 1511 229 95 36 chrX 25790764 25791345 -151182795 + L1MC5 LINE L1 7312 7926 -35 279 319 144 6 chrX 25791351 25791511 -151182629 - L2 LINE L2 -342 2972 2791 1868 206 62 9 chrX 25791787 25792223 -151181917 - MLT1C LTR MaLR -8 459 1 1575 203 60 34 chrX 25793374 25793788 -151180352 + MLT1C LTR MaLR 8 432 -35 343 272 19 19 chrX 25794170 25794273 -151179867 - L2 LINE L2 -1 3271 3169 1747 166 58 76 chrX 25794569 25794966 -151179174 + MLT1B LTR MaLR 1 390 0 245 301 122 32 chrX 25795135 25795291 -151178849 + MIR SINE MIR 21 190 -72 2749 110 0 0 chrX 25795340 25795704 -151178436 - THE1B LTR MaLR 0 364 1 670 249 49 101 chrX 25795706 25795917 -151178223 - LTR16C LTR ERVL -14 477 286 1942 158 0 0 chrX 25795917 25796232 -151177908 + AluJo SINE Alu 1 315 0 670 249 49 101 chrX 25796232 25796345 -151177795 - LTR16C LTR ERVL -205 286 169 1580 176 133 18 chrX 25796349 25796746 -151177394 - MLT1D LTR MaLR 0 505 63 2231 157 41 10 chrX 25796836 25797249 -151176891 + MSTB1 LTR MaLR 7 432 0 302 252 144 50 chrX 25797467 25797645 -151176495 - MIR SINE MIR -59 203 18 1380 217 110 10 chrX 25798190 25798573 -151175567 + LTR16C LTR ERVL 71 491 0 313 206 33 11 chrX 25798869 25798961 -151175179 + L1MC5 LINE L1 7832 7925 -36 465 286 110 9 chrX 25799032 25799387 -151174753 + LTR16C LTR ERVL 84 491 0 1700 164 17 24 chrX 25799521 25799814 -151174326 + AluJb SINE Alu 1 291 -21 403 297 55 16 chrX 25800576 25800704 -151173436 + MLT1G1 LTR MaLR 139 271 -284 1640 131 25 0 chrX 25800727 25801010 -151173130 + L1MA8 LINE L1 5988 6277 -14 3050 135 4 8 chrX 25801010 25801477 -151172663 + L1PB4 LINE L1 5683 6154 -2 926 176 0 16 chrX 25801503 25801690 -151172450 - L1MA3 LINE L1 0 6305 6122 989 198 118 4 chrX 25801752 25801989 -151172151 + MLT1G1 LTR MaLR 332 595 0 642 286 145 7 chrX 25802045 25802328 -151171812 + MLT1J2 LTR MaLR 1 322 -128 298 194 16 0 chrX 25802638 25802700 -151171440 + MLT1J2 LTR MaLR 388 450 0 251 356 45 23 chrX 25802773 25802950 -151171190 + L2 LINE L2 3130 3310 -3 479 284 105 0 chrX 25802954 25803177 -151170963 - MIR SINE MIR -10 252 1 207 292 0 0 chrX 25803611 25803659 -151170481 + (TG)n Simple_repeat Simple_repeat 1 48 0 401 314 75 64 chrX 25806077 25806517 -151167623 + LTR16B LTR ERVL 1 445 -5 377 282 57 32 chrX 25806915 25807039 -151167101 + L2 LINE L2 3142 3268 -4 483 261 97 36 chrX 25807501 25807571 -151166569 - MIR SINE MIR -42 220 156 2453 66 10 3 chrX 25807571 25807874 -151166266 - AluY SINE Alu -6 305 1 483 261 97 36 chrX 25807874 25807998 -151166142 - MIR SINE MIR -106 156 14 350 260 23 11 chrX 25808376 25808518 -151165622 - MIR SINE MIR -72 190 8 986 214 5 0 chrX 25809362 25809549 -151164591 + AluJo SINE Alu 123 310 -2 383 248 8 33 chrX 25809581 25809702 -151164438 - MER45C DNA AcHobo -102 851 734 692 189 5 13 chrX 25809797 25809979 -151164161 - MER45C DNA AcHobo -686 267 55 379 284 88 34 chrX 25809997 25810201 -151163939 + LTR16C LTR ERVL 115 329 -162 2000 184 51 51 chrX 25810348 25810815 -151163325 - MLT1C LTR MaLR 0 467 1 332 213 13 0 chrX 25810928 25811003 -151163137 - MER5A DNA MER1_type -83 106 31 239 169 12 133 chrX 25811666 25811749 -151162391 - MLT1H LTR MaLR 0 549 477 599 229 46 67 chrX 25811807 25812047 -151162093 - MLT1H LTR MaLR -248 301 67 693 241 107 23 chrX 25812994 25813210 -151160930 + MIR SINE MIR 17 250 -12 1085 226 15 11 chrX 25813222 25813488 -151160652 - MER46C DNA MER2_type -2 336 70 399 119 0 0 chrX 25814151 25814218 -151159922 + (TG)n Simple_repeat Simple_repeat 2 68 0 531 264 38 54 chrX 25814713 25814805 -151159335 - LTR16C LTR ERVL -3 466 374 2477 152 59 2 chrX 25814805 25815245 -151158895 - MLT1C LTR MaLR -2 465 1 531 264 38 54 chrX 25815245 25815416 -151158724 - LTR16C LTR ERVL -95 374 227 2744 88 54 10 chrX 25815482 25815890 -151158250 + MSTA LTR MaLR 3 428 0 601 312 52 13 chrX 25817025 25817256 -151156884 + MIR SINE MIR 23 262 0 740 211 177 93 chrX 25817274 25817766 -151156374 - MLT1H LTR MaLR -3 546 14 400 299 41 0 chrX 25818412 25818509 -151155631 - L2 LINE L2 -6 3307 3207 305 200 17 0 chrX 25818764 25818824 -151155316 - MIR SINE MIR -38 224 164 893 261 146 50 chrX 25818825 25819236 -151154904 - MLT1H LTR MaLR 0 549 80 2026 136 0 3 chrX 25819236 25819545 -151154595 - AluJb SINE Alu -4 308 1 893 261 146 50 chrX 25819545 25819634 -151154506 - MLT1H LTR MaLR -469 80 1 544 250 18 0 chrX 25819636 25819782 -151154358 - MIR SINE MIR -63 145 17 209 200 25 0 chrX 25820780 25820820 -151153320 + MIR SINE MIR 2 42 -220 376 265 29 20 chrX 25821114 25821216 -151152924 - MLT1K LTR MaLR -343 245 143 620 176 164 24 chrX 25821398 25821563 -151152577 - MER5A DNA MER1_type -1 188 1 2497 68 0 0 chrX 25822400 25822709 -151151431 - AluSc SINE Alu 0 309 1 1170 185 47 126 chrX 25822849 25823312 -151150828 - MLT2D LTR ERVL -10 510 1 296 274 71 12 chrX 25823337 25823421 -151150719 + L2 LINE L2 3225 3313 0 266 210 74 12 chrX 25824159 25824240 -151149900 + MIR SINE MIR 113 198 -64 220 219 0 0 chrX 25824251 25824292 -151149848 - MIR SINE MIR -6 256 216 193 231 31 46 chrX 25824770 25824835 -151149305 + MIR SINE MIR 188 251 -11 780 253 43 17 chrX 25824964 25825197 -151148943 - L2 LINE L2 -7 3306 3068 423 306 61 7 chrX 25825195 25825342 -151148798 + MIR SINE MIR 91 245 -17 * 766 244 122 48 chrX 25825858 25826222 -151147918 - LTR33 LTR ERVL -1 520 110 2225 112 0 0 chrX 25826222 25826534 -151147606 + AluSx SINE Alu 1 312 0 766 244 122 48 chrX 25826534 25826653 -151147487 - LTR33 LTR ERVL -411 110 1 956 172 58 6 chrX 25826711 25826885 -151147255 - MER5A DNA MER1_type 0 189 7 826 173 0 8 chrX 25826886 25827019 -151147121 - FLAM_A SINE Alu -1 132 1 203 42 0 0 chrX 25827021 25827045 -151147095 - MER5A DNA MER1_type -165 24 1 265 156 46 28 chrX 25828733 25828842 -151145298 + (CA)n Simple_repeat Simple_repeat 1 111 0 337 91 73 0 chrX 25832450 25832505 -151141635 + MLT1J1 LTR MaLR 1 59 -387 319 145 29 0 chrX 25832628 25832697 -151141443 + CT-rich Low_complexity Low_complexity 3 73 0 602 238 81 57 chrX 25832711 25832832 -151141308 + MLT1J1 LTR MaLR 177 294 -152 996 281 66 23 chrX 25832832 25833270 -151140870 - LTR16A1 LTR ERVL 0 457 1 602 238 81 57 chrX 25833270 25833396 -151140744 + MLT1J1 LTR MaLR 294 430 -16 414 259 0 0 chrX 25833431 25833516 -151140624 - MER58B DNA MER1_type 0 341 257 407 309 24 18 chrX 25834102 25834267 -151139873 + HERVL LTR ERVL 5160 5325 -329 481 325 39 31 chrX 25834401 25834687 -151139453 + LTR16A LTR ERVL 57 344 -106 4620 173 37 11 chrX 25834713 25836220 -151137920 + L1MB8 LINE L1 4620 6166 -12 236 214 14 86 chrX 25836220 25836290 -151137850 + LTR16A LTR ERVL 379 443 -7 280 185 93 130 chrX 25837067 25837175 -151136965 - L2 LINE L2 -14 3258 3155 753 213 91 30 chrX 25837391 25837588 -151136552 + MER3 DNA MER1_type 1 209 0 736 306 62 22 chrX 25837826 25838150 -151135990 - MER102b DNA MER1_type 0 341 5 280 225 81 90 chrX 25838246 25838357 -151135783 + L2 LINE L2 3163 3272 0 194 298 33 91 chrX 25839270 25839391 -151134749 - MIR3 SINE MIR -11 197 84 468 130 210 111 chrX 25840418 25840463 -151133677 - MER5A DNA MER1_type -3 186 147 2290 90 0 0 chrX 25840463 25840762 -151133378 + AluSx SINE Alu 1 299 -13 468 130 210 111 chrX 25840762 25840878 -151133262 - MER5A DNA MER1_type -42 147 9 422 182 20 0 chrX 25841058 25841157 -151132983 + GA-rich Low_complexity Low_complexity 4 104 0 617 163 192 6 chrX 25841866 25842014 -151132126 + MER5A DNA MER1_type 4 183 -6 224 235 49 131 chrX 25842926 25842995 -151131145 + L3 LINE CR1 615 688 -889 2168 109 3 6 chrX 25842995 25843308 -151130832 + AluSx SINE Alu 1 312 0 224 235 49 131 chrX 25843308 25843421 -151130719 + L3 LINE CR1 688 782 -795 809 307 80 23 chrX 25843604 25843956 -151130184 + L3 LINE CR1 797 1168 -409 275 279 153 8 chrX 25844358 25844541 -151129599 - MLT1J LTR MaLR -174 392 205 613 304 60 54 chrX 25844600 25845084 -151129056 - L2 LINE L2 -846 2468 1982 1886 178 27 104 chrX 25845495 25846050 -151128090 + L1ME3 LINE L1 5651 6162 0 2202 99 3 0 chrX 25846408 25846712 -151127428 - AluSx SINE Alu -6 306 2 364 306 39 34 chrX 25846862 25847068 -151127072 + L3 LINE CR1 1150 1356 -221 278 339 8 25 chrX 25847072 25847190 -151126950 - L3 LINE CR1 -471 1106 991 218 260 60 30 chrX 25847291 25847391 -151126749 - L3 LINE CR1 -621 956 854 248 304 91 60 chrX 25847615 25848004 -151126136 + LTR33 LTR ERVL 4 379 -142 2251 123 42 25 chrX 25848004 25848362 -151125778 - THE1B LTR MaLR 0 364 1 12143 85 11 0 chrX 25848362 25849925 -151124215 - THE1B-int LTR MaLR 0 1580 1 2241 154 31 14 chrX 25849925 25850283 -151123857 - THE1B LTR MaLR 0 364 1 248 304 91 60 chrX 25850283 25850359 -151123781 + LTR33 LTR ERVL 378 513 -8 319 296 45 45 chrX 25850752 25850915 -151123225 - MIR3 SINE MIR -4 204 43 394 77 62 15 chrX 25851139 25851204 -151122936 - MSTC LTR MaLR -360 68 1 7729 181 99 33 chrX 25851217 25852839 -151121301 - MLT1A1-int LTR MaLR -5 1730 2 1490 176 33 109 chrX 25852840 25853233 -151120907 - MLT1A1 LTR MaLR 0 365 3 5421 102 24 32 chrX 25853549 25853904 -151120236 - L1MA7 LINE L1 -1 6290 5934 1885 146 0 3 chrX 25853904 25854198 -151119942 - AluJb SINE Alu -19 293 1 5421 102 24 32 chrX 25854198 25854724 -151119416 - L1MA7 LINE L1 -357 5934 5416 1267 276 75 8 chrX 25854724 25855086 -151119054 + LTR16C LTR ERVL 105 490 -1 4235 137 26 0 chrX 25855577 25856273 -151117867 + L1MB3 LINE L1 5445 6158 -25 679 195 0 8 chrX 25856401 25856519 -151117621 - FLAM_C SINE Alu -25 118 2 1596 242 35 42 chrX 25856623 25857077 -151117063 - LTR16A1 LTR ERVL 0 457 7 358 311 25 8 chrX 25857165 25857287 -151116853 + MIR SINE MIR 35 158 -104 322 302 113 63 chrX 25857339 25857481 -151116659 + MLT1K LTR MaLR 110 243 -345 2165 112 0 0 chrX 25857481 25857777 -151116363 - AluSx SINE Alu -16 296 1 322 302 113 63 chrX 25857777 25858031 -151116109 + MLT1K LTR MaLR 243 526 -62 207 0 0 0 chrX 25858034 25858057 -151116083 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 278 269 0 0 chrX 25858086 25858153 -151115987 + MLT1K LTR MaLR 522 588 0 211 283 19 0 chrX 25858156 25858209 -151115931 + MIR SINE MIR 154 207 -55 209 235 81 128 chrX 25858705 25858854 -151115286 + MER5A DNA MER1_type 48 189 0 1416 249 104 39 chrX 25859468 25859929 -151114211 - LTR16C LTR ERVL 0 491 1 1211 186 54 120 chrX 25859998 25860422 -151113718 - MSTD LTR MaLR 0 396 1 758 233 100 54 chrX 25862333 25862584 -151111556 - MLT1H LTR MaLR 0 549 311 2434 157 60 0 chrX 25862584 25862986 -151111154 + MSTB LTR MaLR 1 426 0 758 233 100 54 chrX 25862986 25863155 -151110985 - MLT1H LTR MaLR -238 311 42 6741 22 4 0 chrX 25863155 25863930 -151110210 + L1PA4 LINE L1 5378 6155 0 758 233 100 54 chrX 25863930 25863974 -151110166 - MLT1H LTR MaLR -507 42 1 277 250 153 51 chrX 25866206 25866402 -151107738 - MLT1J LTR MaLR -8 503 288 847 227 36 5 chrX 25866441 25866635 -151107505 - MLT1J LTR MaLR -311 200 1 1061 309 91 36 chrX 25866964 25867544 -151106596 + L3 LINE CR1 445 1056 -521 652 276 168 67 chrX 25867548 25868029 -151106111 + MLT1H LTR MaLR 20 549 0 510 344 199 12 chrX 25868029 25868224 -151105916 + L3 LINE CR1 1069 1226 -351 1427 209 117 3 chrX 25868224 25868550 -151105590 + MLT1A1 LTR MaLR 1 363 -2 510 344 199 12 chrX 25868550 25868700 -151105440 + L3 LINE CR1 1226 1479 -98 180 171 0 49 chrX 25869730 25869771 -151104369 + L2 LINE L2 3168 3206 -107 262 355 6 29 chrX 25870359 25870531 -151103609 + GA-rich Low_complexity Low_complexity 3 170 0 984 163 27 63 chrX 25870839 25871060 -151103080 + MER20 DNA MER1_type 1 213 -6 583 204 136 14 chrX 25871064 25871211 -151102929 + MER5A DNA MER1_type 25 189 0 908 147 7 0 chrX 25871255 25871398 -151102742 - MER3 DNA MER1_type -52 157 14 2404 158 44 7 chrX 25871649 25872106 -151102034 - Charlie4a DNA MER1_type 0 508 35 500 243 7 56 chrX 25872146 25872290 -151101850 - MLT1J2 LTR MaLR -201 249 113 1767 144 7 3 chrX 25872481 25872773 -151101367 + AluSx SINE Alu 5 297 -15 858 217 50 130 chrX 25873990 25874261 -151099879 + L1MC4 LINE L1 7597 7814 -228 2464 141 8 0 chrX 25874261 25874623 -151099517 + MLT1A1 LTR MaLR 1 365 0 858 217 50 130 chrX 25874623 25874834 -151099306 + L1MC4 LINE L1 7814 8040 -2 207 0 0 0 chrX 25874861 25874884 -151099256 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1783 170 3 0 chrX 25874884 25875168 -151098972 - AluJb SINE Alu -24 288 1 1208 132 159 40 chrX 25875335 25875658 -151098482 + MER33 DNA MER1_type 1 315 -9 397 299 192 23 chrX 25875846 25876082 -151098058 - L2 LINE L2 -315 2957 2686 1241 243 187 39 chrX 25876244 25876762 -151097378 + MLT1G1 LTR MaLR 1 595 0 323 240 94 0 chrX 25877834 25877930 -151096210 - MIR SINE MIR -74 188 84 2904 77 3 11 chrX 25878097 25878475 -151095665 + THE1C LTR MaLR 1 375 0 1192 206 95 14 chrX 25879146 25879442 -151094698 - MER5C DNA MER1_type -4 320 1 189 257 238 38 chrX 25879681 25879786 -151094354 - MIR3 SINE MIR -73 135 10 205 256 12 85 chrX 25880483 25880565 -151093575 + MIR SINE MIR 110 185 -77 536 246 119 0 chrX 25882903 25883037 -151091103 - MIR SINE MIR -99 163 14 389 250 17 75 chrX 25883824 25883944 -151090196 - L2 LINE L2 -8 3305 3193 372 237 127 34 chrX 25883968 25884086 -151090054 + L2 LINE L2 3142 3270 -2 355 292 88 18 chrX 25884094 25884265 -151089875 - MIR SINE MIR -51 211 29 372 157 114 0 chrX 25884418 25884488 -151089652 + L1MC4a LINE L1 6670 6747 -1061 1110 260 92 2 chrX 25884488 25884888 -151089252 + L1MC4 LINE L1 7607 8042 0 441 0 0 0 chrX 25885500 25885549 -151088591 + (TG)n Simple_repeat Simple_repeat 2 50 0 2114 103 0 3 chrX 25885754 25886054 -151088086 + AluSc SINE Alu 1 299 -10 2097 74 3 11 chrX 25886782 25887067 -151087073 + AluSp SINE Alu 1 283 -30 513 306 38 11 chrX 25887148 25887413 -151086727 - L1MEd LINE L1 -3423 2706 2435 390 276 19 19 chrX 25887413 25887518 -151086622 + L2 LINE L2 3194 3298 -15 1747 141 3 24 chrX 25887522 25887813 -151086327 + AluSx SINE Alu 1 285 -27 354 306 10 5 chrX 25887830 25888039 -151086101 - L1MEd LINE L1 -3692 2437 2228 1322 188 18 47 chrX 25888056 25888333 -151085807 + AluJb SINE Alu 5 273 -39 1107 217 57 184 chrX 25888614 25889295 -151084845 + MLT1G LTR MaLR 1 590 0 1678 168 34 0 chrX 25889441 25889614 -151084526 - AluJo SINE Alu -5 307 118 186 71 0 0 chrX 25889614 25889642 -151084498 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 1678 168 34 0 chrX 25889642 25889765 -151084375 - AluJo SINE Alu -194 118 1 1749 263 93 88 chrX 25889826 25890087 -151084053 - L1MEd LINE L1 -4887 1232 974 441 0 0 0 chrX 25890087 25890136 -151084004 + (TG)n Simple_repeat Simple_repeat 2 50 0 1749 263 93 88 chrX 25890136 25890154 -151083986 - L1MEd LINE L1 -5145 974 958 1272 225 52 0 chrX 25890154 25890325 -151083815 - AluJo SINE Alu 0 305 112 423 0 0 0 chrX 25890325 25890372 -151083768 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1272 225 52 0 chrX 25890372 25890491 -151083649 - AluJo SINE Alu -193 112 1 1749 263 93 88 chrX 25890491 25890642 -151083498 - L1MEd LINE L1 -5161 958 809 1324 148 184 4 chrX 25890642 25890898 -151083242 + AluJb SINE Alu 1 302 0 1749 263 93 88 chrX 25890898 25891146 -151082994 - L1MEd LINE L1 -5310 809 564 2332 88 0 0 chrX 25891146 25891452 -151082688 + AluSg1 SINE Alu 1 306 -3 1749 263 93 88 chrX 25891452 25891991 -151082149 - L1MEd LINE L1 -5555 564 5 489 208 97 64 chrX 25892330 25892479 -151081661 + MIR SINE MIR 13 170 -92 3260 159 26 13 chrX 25892479 25892518 -151081622 - MLT2B3 LTR ERVL 0 554 517 591 62 0 0 chrX 25892518 25892598 -151081542 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 3260 159 26 13 chrX 25892598 25893105 -151081035 - MLT2B3 LTR ERVL -37 517 1 489 208 97 64 chrX 25893105 25893148 -151080992 + MIR SINE MIR 170 210 -52 419 283 141 1 chrX 25893521 25893679 -151080461 - MIR3 SINE MIR -8 200 21 691 243 129 62 chrX 25894898 25895069 -151079071 + MLT1J2 LTR MaLR 64 222 -228 1042 170 39 0 chrX 25895069 25895251 -151078889 + MER5A DNA MER1_type 1 189 0 691 243 129 62 chrX 25895251 25895420 -151078720 + MLT1J2 LTR MaLR 222 427 -23 1839 178 162 88 chrX 25895926 25896532 -151077608 + MLT1E1 LTR MaLR 4 654 0 674 263 91 93 chrX 25896555 25896991 -151077149 + LTR16A1 LTR ERVL 2 407 -50 200 174 0 43 chrX 25897299 25897345 -151076795 + GA-rich Low_complexity Low_complexity 5 48 0 934 239 132 39 chrX 25897784 25897984 -151076156 - LTR16C LTR ERVL -6 485 305 1803 130 0 70 chrX 25897984 25898315 -151075825 + AluJb SINE Alu 1 308 -4 934 239 132 39 chrX 25898315 25898469 -151075671 - LTR16C LTR ERVL -186 305 98 1661 173 48 57 chrX 25898751 25899140 -151075000 + MLT1B LTR MaLR 1 593 0 813 163 0 22 chrX 25899287 25899422 -151074718 + AluJo SINE Alu 1 132 -170 252 245 43 96 chrX 25899780 25899828 -151074312 + L2 LINE L2 3223 3265 -48 881 215 13 0 chrX 25899828 25899986 -151074154 + AluJo SINE Alu 137 296 -6 252 245 43 96 chrX 25899986 25900031 -151074109 + L2 LINE L2 3265 3311 -2 187 368 0 0 chrX 25900066 25900142 -151073998 - MIR3 SINE MIR -11 197 122 1705 213 90 25 chrX 25900201 25900600 -151073540 + LTR16C LTR ERVL 67 491 0 228 236 47 85 chrX 25900606 25900712 -151073428 - MIR3 SINE MIR -95 113 12 2060 165 25 6 chrX 25901013 25901371 -151072769 - MLT1A1 LTR MaLR 0 365 1 206 185 74 12 chrX 25901575 25901656 -151072484 + (CA)n Simple_repeat Simple_repeat 1 86 0 226 244 61 37 chrX 25901695 25901859 -151072281 + (CA)n Simple_repeat Simple_repeat 2 169 0 1971 266 63 17 chrX 25902713 25903345 -151070795 - MLT2F LTR ERVL 0 663 3 738 252 129 39 chrX 25903431 25903794 -151070346 - MLT1H LTR MaLR 0 542 23 226 327 36 9 chrX 25904351 25904461 -151069679 + MIR SINE MIR 150 262 0 1863 249 92 4 chrX 25904503 25905036 -151069104 - MLT1G LTR MaLR -9 581 2 598 296 76 14 chrX 25905281 25905504 -151068636 - MIR SINE MIR -17 245 9 952 258 189 20 chrX 25906781 25907177 -151066963 + MLT1K LTR MaLR 124 586 -2 2287 86 3 0 chrX 25908019 25908322 -151065818 + AluSp SINE Alu 1 304 -9 499 83 0 24 chrX 25908710 25908794 -151065346 + (TG)n Simple_repeat Simple_repeat 1 82 0 432 236 312 0 chrX 25908931 25909088 -151065052 - MIR SINE MIR -10 252 47 189 326 122 14 chrX 25909196 25909343 -151064797 + L2 LINE L2 3106 3268 -4 350 301 45 15 chrX 25909427 25909560 -151064580 + MIR SINE MIR 126 262 0 689 251 135 28 chrX 25910641 25911114 -151063026 + MLT1H1 LTR MaLR 1 555 0 2236 75 0 3 chrX 25911988 25912280 -151061860 + AluSq SINE Alu 1 291 -22 3124 107 5 0 chrX 25912416 25912848 -151061292 + MER57B LTR ERV1 1 434 0 740 263 28 32 chrX 25913510 25913727 -151060413 - MIR SINE MIR 0 262 47 808 155 31 0 chrX 25913847 25913976 -151060164 + FLAM_A SINE Alu 1 133 0 796 121 14 0 chrX 25913978 25914119 -151060021 + (GGAA)n Simple_repeat Simple_repeat 2 144 0 360 0 0 0 chrX 25915292 25915332 -151058808 + (TC)n Simple_repeat Simple_repeat 2 41 0 245 300 50 20 chrX 25916093 25916193 -151057947 + MIR SINE MIR 39 141 -67 2034 234 71 21 chrX 25918134 25918715 -151055425 - L1ME3 LINE L1 -1 6161 5552 325 160 0 53 chrX 25918778 25918853 -151055287 - MIR SINE MIR 0 262 192 400 306 19 0 chrX 25918999 25919107 -151055033 - MIR SINE MIR -62 146 37 819 249 137 59 chrX 25919235 25919776 -151054364 - MLT1G1 LTR MaLR -2 593 11 700 321 28 5 chrX 25920237 25920455 -151053685 + MIR SINE MIR 20 242 -20 386 160 132 0 chrX 25920535 25920641 -151053499 - L1ME3A LINE L1 -66 6104 5985 222 302 88 85 chrX 25921715 25922043 -151052097 + L2 LINE L2 2896 3224 -48 1302 251 47 21 chrX 25922057 25922479 -151051661 + LTR16C LTR ERVL 4 436 -55 15501 91 14 70 chrX 25922483 25922665 -151051475 - Tigger1 DNA MER2_type 0 2418 2227 741 209 50 0 chrX 25922665 25922833 -151051307 + FRAM SINE Alu 1 175 0 15501 91 14 70 chrX 25922833 25923604 -151050536 - Tigger1 DNA MER2_type -191 2227 1415 2254 108 10 0 chrX 25923604 25923901 -151050239 - AluSx SINE Alu -12 300 1 15501 91 14 70 chrX 25923901 25925367 -151048773 - Tigger1 DNA MER2_type -1003 1415 1 310 137 20 0 chrX 25925367 25925418 -151048722 + LTR16C LTR ERVL 434 485 -6 218 191 0 0 chrX 25925428 25925470 -151048670 + L2 LINE L2 3272 3313 0 579 283 164 0 chrX 25926346 25926565 -151047575 - MIR SINE MIR 0 262 8 2372 88 27 3 chrX 25926695 25926902 -151047238 - MER39 LTR ERV1 0 707 506 2652 124 30 28 chrX 25926902 25927186 -151046954 - MSTA LTR MaLR 0 428 141 2238 104 7 3 chrX 25927186 25927495 -151046645 + AluY SINE Alu 1 310 -1 2652 124 30 28 chrX 25927495 25927637 -151046503 - MSTA LTR MaLR -287 141 1 2372 88 27 3 chrX 25927637 25928023 -151046117 - MER39 LTR ERV1 -201 506 5 1037 268 11 0 chrX 25928027 25928288 -151045852 - LTR16C LTR ERVL -17 474 211 201 244 0 0 chrX 25928447 25928488 -151045652 - MIR SINE MIR -105 157 117 2411 78 0 23 chrX 25929059 25929366 -151044774 + AluSx SINE Alu 2 301 -11 2302 194 32 22 chrX 25929529 25930028 -151044112 + MLT1D LTR MaLR 1 504 -1 241 292 25 119 chrX 25930343 25930545 -151043595 - MER5A DNA MER1_type 0 189 7 2275 83 49 0 chrX 25930668 25930956 -151043184 + AluSq SINE Alu 1 302 -11 1111 261 63 74 chrX 25931164 25931449 -151042691 + MLT1L LTR MaLR 5 282 -333 688 221 15 0 chrX 25931449 25931580 -151042560 + FLAM_A SINE Alu 1 133 0 1111 261 63 74 chrX 25931580 25931865 -151042275 + MLT1L LTR MaLR 282 569 -46 1015 216 71 56 chrX 25931948 25932155 -151041985 + MER2 DNA MER2_type 1 216 -129 404 78 250 0 chrX 25932155 25932219 -151041921 - MADE1 DNA Mariner 0 80 1 1015 216 71 56 chrX 25932219 25932349 -151041791 + MER2 DNA MER2_type 216 343 -2 3035 124 30 14 chrX 25932349 25932847 -151041293 + L1MA7 LINE L1 5784 6289 -2 577 95 0 0 chrX 25932859 25932933 -151041207 - AluSg/x SINE Alu -19 291 218 1727 249 80 16 chrX 25932965 25933455 -151040685 + MLT1G1 LTR MaLR 75 595 0 1242 211 0 0 chrX 25933509 25933732 -151040408 - MER58A DNA MER1_type 0 224 2 324 176 0 0 chrX 25934420 25934488 -151039652 + CT-rich Low_complexity Low_complexity 1 68 0 1600 277 59 23 chrX 25934653 25935508 -151038632 + HAL1 LINE L1 1 993 -1514 1071 236 51 8 chrX 25935513 25935750 -151038390 - MIR SINE MIR -1 261 15 2531 228 51 68 chrX 25935754 25936791 -151037349 + HAL1 LINE L1 998 2017 -490 1020 228 174 45 chrX 25936796 25937125 -151037015 - MLT1H LTR MaLR -4 545 133 2439 169 35 52 chrX 25937125 25937639 -151036501 + MLT1D LTR MaLR 1 505 0 1020 228 174 45 chrX 25937639 25937792 -151036348 - MLT1H LTR MaLR -416 133 1 1044 214 114 46 chrX 25937816 25938185 -151035955 + HAL1 LINE L1 2095 2488 -19 226 216 113 52 chrX 25938959 25939016 -151035124 + MIR SINE MIR 98 165 -97 2169 139 58 0 chrX 25939016 25939362 -151034778 - MER47A DNA MER2_type 0 366 1 226 216 113 52 chrX 25939362 25939401 -151034739 + MIR SINE MIR 165 200 -62 360 111 0 0 chrX 25939402 25939456 -151034684 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1798 159 0 0 chrX 25939460 25939736 -151034404 - AluJo SINE Alu -30 282 7 598 221 86 66 chrX 25939849 25940197 -151033943 + MLT1H LTR MaLR 100 549 0 1540 183 33 36 chrX 25940719 25941025 -151033115 - AluJb SINE Alu -7 305 1 252 321 86 0 chrX 25941097 25941178 -151032962 + L2 LINE L2 3148 3235 -37 830 128 14 5 chrX 25941183 25941410 -151032730 + (TGGA)n Simple_repeat Simple_repeat 1 229 0 430 330 77 0 chrX 25942701 25942895 -151031245 + L3b LINE CR1 1109 1317 -266 327 226 31 56 chrX 25942929 25943105 -151031035 - Charlie7 DNA MER1_type -5 2607 2435 2964 6 0 0 chrX 25943105 25943417 -151030723 - AluYb8 SINE Alu -6 312 1 327 226 31 56 chrX 25943417 25943435 -151030705 - Charlie7 DNA MER1_type -177 2435 2418 224 246 0 72 chrX 25943524 25943593 -151030547 + L2 LINE L2 3203 3266 -47 447 258 18 76 chrX 25943596 25943821 -151030319 - LTR16A1 LTR ERVL -7 450 239 229 179 107 71 chrX 25944452 25944536 -151029604 + MIR SINE MIR 60 146 -62 950 205 92 54 chrX 25945377 25945616 -151028524 + MIR SINE MIR 11 258 -4 395 271 0 11 chrX 25945619 25945800 -151028340 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 397 240 19 86 chrX 25945812 25945959 -151028181 + L1MC4 LINE L1 6526 6709 -1139 360 206 56 75 chrX 25945879 25945986 -151028154 - L1MCa LINE L1 -4364 2062 1958 * 245 197 55 87 chrX 25946498 25946625 -151027515 - MLT1I LTR MaLR -33 376 254 313 283 12 64 chrX 25946998 25947171 -151026969 - MLT1K LTR MaLR -28 560 397 247 293 88 20 chrX 25947211 25947358 -151026782 - MLT1K LTR MaLR -266 322 166 978 218 35 32 chrX 25947619 25947904 -151026236 - MLT1H LTR MaLR -188 367 53 532 40 13 0 chrX 25947904 25947980 -151026160 - AluY SINE Alu -1 311 235 965 129 29 0 chrX 25947980 25948120 -151026020 - AluSq/x SINE Alu -169 144 1 347 270 11 0 chrX 25948120 25948209 -151025931 - MLT1G1 LTR MaLR -490 105 16 248 314 105 16 chrX 25949805 25949929 -151024211 - L2 LINE L2 -1 3312 3178 617 310 55 9 chrX 25950728 25951054 -151023086 + L1MC/D LINE L1 5315 5655 -2153 217 286 0 16 chrX 25951441 25951504 -151022636 + GA-rich Low_complexity Low_complexity 4 65 0 287 261 109 59 chrX 25951553 25951672 -151022468 - MIR SINE MIR -64 144 20 383 247 14 110 chrX 25952043 25952262 -151021878 - MLT1K LTR MaLR 0 588 391 762 270 50 31 chrX 25952299 25952558 -151021582 - MLT1K LTR MaLR -180 408 145 309 89 0 0 chrX 25952674 25952719 -151021421 + (TG)n Simple_repeat Simple_repeat 2 46 0 308 279 194 18 chrX 25952752 25952917 -151021223 - L1MC4a LINE L1 -1630 6178 5985 384 231 22 0 chrX 25953687 25953800 -151020340 - MIR SINE MIR -49 213 99 183 129 0 0 chrX 25954503 25954534 -151019606 + (TG)n Simple_repeat Simple_repeat 2 32 0 2474 211 40 28 chrX 25956135 25956351 -151017789 - MLT1G LTR MaLR -1 589 377 2527 150 52 5 chrX 25956351 25956758 -151017382 + MSTB LTR MaLR 1 426 0 2474 211 40 28 chrX 25956758 25957114 -151017026 - MLT1G LTR MaLR -213 377 10 398 235 34 101 chrX 25957597 25957746 -151016394 - MIR3 SINE MIR -20 188 50 206 196 36 18 chrX 25958889 25958945 -151015195 + GA-rich Low_complexity Low_complexity 2 58 0 460 220 31 76 chrX 25959701 25959862 -151014278 + MIR3 SINE MIR 44 201 -7 1158 196 17 30 chrX 25960116 25960451 -151013689 + AluJo SINE Alu 86 417 0 251 279 0 0 chrX 25960458 25960526 -151013614 - MIR SINE MIR -78 184 117 212 340 204 6 chrX 25960548 25960710 -151013430 + MIR SINE MIR 13 206 -56 210 233 50 17 chrX 25960792 25960852 -151013288 + L2 LINE L2 3207 3268 -4 1122 117 0 0 chrX 25961679 25961858 -151012282 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 547 249 115 10 chrX 25962065 25962274 -151011866 + MIR SINE MIR 5 235 -27 521 262 141 19 chrX 25962314 25962520 -151011620 + MIR SINE MIR 20 250 -12 424 272 236 16 chrX 25962848 25963039 -151011101 + MIR SINE MIR 30 262 0 1605 172 63 0 chrX 25964569 25964854 -151009286 - AluJo SINE Alu -9 303 1 215 266 16 133 chrX 25965090 25965218 -151008922 + L2 LINE L2 2908 3020 -252 441 0 0 0 chrX 25965290 25965339 -151008801 + (CA)n Simple_repeat Simple_repeat 2 50 0 475 257 154 9 chrX 25965528 25965743 -151008397 - MIR SINE MIR 0 262 21 479 207 222 0 chrX 25965896 25966031 -151008109 + MER5A DNA MER1_type 9 173 -16 1894 221 124 7 chrX 25966294 25966833 -151007307 + L1ME3A LINE L1 5569 6170 0 477 0 0 0 chrX 25967226 25967279 -151006861 + (CA)n Simple_repeat Simple_repeat 2 54 0 511 284 78 29 chrX 25967362 25967605 -151006535 - MIR SINE MIR 0 262 8 864 158 27 22 chrX 25967669 25967853 -151006287 + MER53 DNA DNA 5 189 0 256 269 25 59 chrX 25967857 25967976 -151006164 - MIR3 SINE MIR -83 125 11 197 237 13 92 chrX 25968197 25968273 -151005867 + L2 LINE L2 3132 3201 -71 1257 275 199 8 chrX 25968453 25968930 -151005210 - MLT1G1 LTR MaLR 0 595 28 2345 100 3 0 chrX 25969183 25969483 -151004657 - AluSx SINE Alu -11 301 1 496 292 23 26 chrX 25969815 25970063 -151004077 + MLT1H LTR MaLR 53 269 -140 322 262 40 16 chrX 25970129 25970255 -151003885 + MLT1I LTR MaLR 281 409 0 332 271 0 85 chrX 25970597 25970676 -151003464 + L2 LINE L2 3137 3202 -70 2204 81 54 13 chrX 25970676 25970810 -151003330 + AluSx SINE Alu 1 128 -184 2572 80 0 3 chrX 25970810 25971124 -151003016 + AluSp SINE Alu 1 313 0 2204 81 54 13 chrX 25971124 25971287 -151002853 + AluSx SINE Alu 128 310 -2 332 271 0 85 chrX 25971287 25971336 -151002804 + L2 LINE L2 3202 3254 -18 210 37 0 0 chrX 25971745 25971772 -151002368 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 236 271 144 27 chrX 25971859 25972047 -151002093 - L2 LINE L2 -872 2442 2233 1793 252 16 2 chrX 25972060 25972484 -151001656 - LTR16C LTR ERVL -11 480 51 748 188 0 0 chrX 25972563 25972696 -151001444 + FLAM_A SINE Alu 1 133 0 2238 109 3 0 chrX 25972734 25973041 -151001099 - AluSp SINE Alu 0 308 1 1483 275 129 15 chrX 25974981 25975508 -150998632 + MLT1L LTR MaLR 1 587 -28 2505 71 3 0 chrX 25975720 25976016 -150998124 - AluSp SINE Alu -16 297 1 1836 173 87 58 chrX 25976150 25976601 -150997539 + MLT1C LTR MaLR 4 467 0 1823 134 7 34 chrX 25976724 25977015 -150997125 + AluJo SINE Alu 1 283 -29 21 0 0 0 chrX 25977532 25977553 -150996587 + AT_rich Low_complexity Low_complexity 1 21 0 1495 264 41 45 chrX 25977556 25978048 -150996092 + MLT1J LTR MaLR 3 492 -19 1983 221 45 19 chrX 25978304 25978832 -150995308 + MLT1G1 LTR MaLR 1 595 0 372 103 0 0 chrX 25979095 25979153 -150994987 + (CA)n Simple_repeat Simple_repeat 2 59 0 2348 115 0 3 chrX 25979322 25979634 -150994506 - AluSx SINE Alu -1 311 1 1662 166 39 86 chrX 25979759 25980103 -150994037 + MLT1B LTR MaLR 1 325 -65 2510 67 0 0 chrX 25980103 25980400 -150993740 + AluY SINE Alu 2 298 -13 1662 166 39 86 chrX 25980400 25980464 -150993676 + MLT1B LTR MaLR 325 390 0 243 188 0 0 chrX 25980563 25980611 -150993529 + GA-rich Low_complexity Low_complexity 2 49 0 786 247 95 59 chrX 25980872 25981356 -150992784 - L2 LINE L2 -3 3310 2770 2836 209 22 57 chrX 25981417 25982201 -150991939 + L1MC4 LINE L1 7287 8042 0 2145 124 0 3 chrX 25982221 25982534 -150991606 + AluSx SINE Alu 1 312 0 201 190 17 35 chrX 25983927 25983985 -150990155 - MIR SINE MIR -69 139 83 1207 226 38 31 chrX 25984189 25984507 -150989633 - MER5C DNA MER1_type 0 324 5 2454 100 0 0 chrX 25984543 25984843 -150989297 + AluSq SINE Alu 1 300 -13 198 204 0 82 chrX 25984848 25984897 -150989243 + MIR SINE MIR 50 94 -114 548 228 158 19 chrX 25985200 25985358 -150988782 - MER5A DNA MER1_type 0 189 10 647 122 58 93 chrX 25986177 25986316 -150987824 + AluJb SINE Alu 1 134 -178 222 318 47 9 chrX 25986442 25986549 -150987591 - L2 LINE L2 -6 3307 3197 281 268 41 0 chrX 25986609 25986706 -150987434 + LTR16A LTR ERVL 91 191 -259 457 30 30 0 chrX 25987915 25987982 -150986158 + (CA)n Simple_repeat Simple_repeat 1 69 0 1648 144 8 38 chrX 25988384 25988528 -150985612 - AluJb SINE Alu -56 256 122 225 0 0 0 chrX 25988528 25988553 -150985587 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1648 144 8 38 chrX 25988553 25988672 -150985468 - AluJb SINE Alu -190 122 1 787 264 122 21 chrX 25989070 25989358 -150984782 - LTR16C LTR ERVL 0 491 175 198 246 177 46 chrX 25989784 25989914 -150984226 + MIR3 SINE MIR 34 180 -28 2649 139 39 31 chrX 25989977 25990496 -150983644 - L1MB5 LINE L1 0 6174 5652 1249 125 0 0 chrX 25990497 25990665 -150983475 - AluJb SINE Alu -10 302 135 365 140 64 12 chrX 25990665 25990836 -150983304 + (TA)n Simple_repeat Simple_repeat 1 180 0 208 137 39 0 chrX 25990867 25990918 -150983222 + (TA)n Simple_repeat Simple_repeat 1 53 0 2226 108 7 0 chrX 25990918 25991206 -150982934 - AluSq SINE Alu -21 292 3 1002 134 0 0 chrX 25991234 25991398 -150982742 + (TA)n Simple_repeat Simple_repeat 2 165 0 1993 134 3 0 chrX 25991398 25991681 -150982459 - AluSx SINE Alu -28 284 1 735 199 127 0 chrX 25991944 25992110 -150982030 + MIR SINE MIR 4 190 -72 198 258 34 0 chrX 25992939 25992998 -150981142 - MIR SINE MIR -97 165 105 349 197 16 13 chrX 25993063 25993184 -150980956 - MER5A DNA MER1_type -2 187 5 229 224 0 35 chrX 25993824 25993882 -150980258 - MIR3 SINE MIR -1 207 152 574 235 36 18 chrX 25993883 25994049 -150980091 + MER117 DNA MER1_type 3 171 -26 2125 185 41 35 chrX 25994179 25994671 -150979469 + Charlie4a DNA MER1_type 14 508 0 226 260 0 0 chrX 25995243 25995293 -150978847 - MIR3 SINE MIR -8 200 151 198 279 171 27 chrX 25995346 25995457 -150978683 - MIR SINE MIR -64 144 18 840 262 126 49 chrX 25995896 25996262 -150977878 - MLT1J2 LTR MaLR -25 425 32 2293 80 0 28 chrX 25996329 25996649 -150977491 + AluSg SINE Alu 1 312 0 479 154 135 0 chrX 25996859 25996963 -150977177 - L2 LINE L2 -1 3312 3195 1370 241 97 8 chrX 25997239 25997609 -150976531 - LTR16C LTR ERVL 0 491 89 1951 161 0 3 chrX 25997871 25998175 -150975965 + AluJb SINE Alu 1 303 -9 780 301 104 26 chrX 25998178 25998663 -150975477 + L2 LINE L2 2776 3313 0 509 196 42 42 chrX 25999089 25999229 -150974911 + MIR SINE MIR 114 252 -10 496 241 167 9 chrX 26000383 26000534 -150973606 + MER5A DNA MER1_type 3 183 -6 393 253 45 34 chrX 26001460 26001638 -150972502 - L1ME4a LINE L1 -2 6119 5940 529 226 147 74 chrX 26001744 26001934 -150972206 - MER63A DNA MER1_type -5 205 2 461 242 11 0 chrX 26001949 26002044 -150972096 + MER45 DNA AcHobo 1 96 -944 258 279 88 60 chrX 26002162 26002377 -150971763 + L2 LINE L2 2222 2442 -872 210 37 0 0 chrX 26002464 26002491 -150971649 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 1698 132 51 55 chrX 26002949 26003112 -150971028 - AluSx SINE Alu -2 310 147 1621 186 0 3 chrX 26003112 26003413 -150970727 - AluSp SINE Alu 0 313 14 1698 132 51 55 chrX 26003413 26003560 -150970580 - AluSx SINE Alu -165 147 1 668 122 0 0 chrX 26003749 26003847 -150970293 - AluS SINE Alu -214 99 2 296 164 16 0 chrX 26003848 26003909 -150970231 + MSTD LTR MaLR 327 388 -8 269 229 0 0 chrX 26003954 26004015 -150970125 + MER45 DNA AcHobo 1517 1577 -4 586 279 117 25 chrX 26004015 26004446 -150969694 + MLT1H LTR MaLR 67 590 0 2297 108 0 0 chrX 26004761 26005057 -150969083 + AluSx SINE Alu 1 296 -16 331 263 51 25 chrX 26005058 26005176 -150968964 + MER5A DNA MER1_type 66 186 -3 324 270 35 17 chrX 26005078 26005193 -150968947 - MER5A DNA MER1_type -72 117 1 * 787 259 177 10 chrX 26005627 26005932 -150968208 - LTR33A LTR ERVL -165 358 3 478 327 31 0 chrX 26006075 26006234 -150967906 + LTR16C LTR ERVL 87 250 -241 1018 272 43 76 chrX 26007521 26007985 -150966155 - MLT1J LTR MaLR -5 506 59 2345 146 3 5 chrX 26007985 26008376 -150965764 + MLT1B LTR MaLR 1 390 0 1018 272 43 76 chrX 26008376 26008422 -150965718 - MLT1J LTR MaLR -452 59 13 632 108 198 0 chrX 26009256 26009367 -150964773 - FLAM_C SINE Alu 0 133 1 534 183 58 8 chrX 26009387 26009507 -150964633 - AluJ SINE Alu -11 301 176 1287 118 0 54 chrX 26009526 26009730 -150964410 - AluJ SINE Alu -119 193 1 1871 108 39 105 chrX 26009737 26010069 -150964071 - AluSg SINE Alu 0 310 1 507 280 101 0 chrX 26010133 26010301 -150963839 + LTR50 LTR ERVL 1 185 -610 912 310 84 69 chrX 26010352 26011094 -150963046 - HAL1 LINE L1 -939 1568 816 312 177 9 17 chrX 26011265 26011331 -150962809 - MLT1A1 LTR MaLR 0 396 297 41 21 0 0 chrX 26011333 26011381 -150962759 + AT_rich Low_complexity Low_complexity 1 48 0 1952 182 0 0 chrX 26011381 26011683 -150962457 + AluJo SINE Alu 1 302 -10 1524 225 23 23 chrX 26011687 26012083 -150962057 + L1ME3A LINE L1 5771 6166 -4 1481 158 101 36 chrX 26012083 26012361 -150961779 + AluJb SINE Alu 1 296 -16 1776 156 84 22 chrX 26213978 26214299 -150759841 + MER7A DNA MER2_type 8 346 0 709 184 31 92 chrX 26214299 26214461 -150759679 - MER2 DNA MER2_type -193 152 1 1564 222 80 36 chrX 26214463 26214789 -150759351 - L1MC4 LINE L1 -395 7647 7337 1978 117 46 0 chrX 26214789 26215071 -150759069 + AluSx SINE Alu 1 295 -17 1564 222 80 36 chrX 26215071 26215315 -150758825 - L1MC4 LINE L1 -705 7337 7105 1847 157 3 20 chrX 26215315 26215621 -150758519 + AluJo SINE Alu 1 301 -11 1564 222 80 36 chrX 26215621 26215969 -150758171 - L1MC4 LINE L1 -937 7105 6530 845 188 6 0 chrX 26215971 26216131 -150758009 - AluSg/x SINE Alu -17 292 132 231 279 0 15 chrX 26216131 26216199 -150757941 - L1MC4 LINE L1 -1515 6527 6461 1135 254 83 26 chrX 26217116 26217584 -150756556 - L1MC4 LINE L1 -145 7897 7403 295 160 43 106 chrX 26218389 26218424 -150755716 + MER69 DNA AcHobo 2054 2090 -436 2352 76 0 13 chrX 26218424 26218727 -150755413 + AluSg SINE Alu 1 299 -11 295 160 43 106 chrX 26218727 26218785 -150755355 + MER69 DNA AcHobo 2090 2141 -385 2092 75 16 43 chrX 26218790 26219095 -150755045 + AluY SINE Alu 1 297 -14 4837 128 22 3 chrX 26219095 26219810 -150754330 + L1PA15 LINE L1 5433 6161 -4 560 271 79 11 chrX 26219907 26220084 -150754056 + REP3 LTR ERV 1 189 -373 468 212 110 27 chrX 26220473 26220619 -150753521 + L2 LINE L2 2807 2964 -349 852 243 6 0 chrX 26221224 26221397 -150752743 - FAM SINE Alu 0 175 2 2209 110 13 3 chrX 26221411 26221720 -150752420 - AluSx SINE Alu 0 312 1 216 0 0 0 chrX 26221730 26221754 -150752386 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2191 105 3 7 chrX 26221754 26222037 -150752103 - AluSx SINE Alu -28 284 1 2058 134 3 7 chrX 26222047 26222352 -150751788 - AluSx SINE Alu -8 304 1 2373 82 7 10 chrX 26222409 26222712 -150751428 - AluSp SINE Alu -11 302 1 456 201 8 44 chrX 26222716 26222867 -150751273 - L1ME3 LINE L1 0 6162 6017 1211 233 124 79 chrX 26222867 26223851 -150750289 - L1MC5 LINE L1 -786 7175 6163 2188 99 0 7 chrX 26223870 26224153 -150749987 + AluSg SINE Alu 1 281 -29 185 0 40 0 chrX 26224153 26224178 -150749962 + (TA)n Simple_repeat Simple_repeat 2 27 0 1701 170 106 117 chrX 26224217 26224746 -150749394 - MLT1F1 LTR MaLR -2 565 18 547 309 60 73 chrX 26224810 26225255 -150748885 - L1MC4a LINE L1 -1761 6047 5609 2277 92 3 3 chrX 26225255 26225550 -150748590 - AluSg SINE Alu -15 295 1 547 309 60 73 chrX 26225550 26225650 -150748490 - L1MC4a LINE L1 -2199 5609 5509 729 80 0 0 chrX 26225695 26225783 -150748357 - AluSg1 SINE Alu -220 89 2 479 231 8 30 chrX 26225836 26225970 -150748170 - L1ME3 LINE L1 0 6162 6032 2074 114 0 0 chrX 26226027 26226307 -150747833 - AluSx SINE Alu -32 280 1 885 334 55 30 chrX 26226307 26227053 -150747087 - L1MC4a LINE L1 -881 6927 6163 2247 79 0 10 chrX 26227068 26227359 -150746781 - AluSx SINE Alu -24 288 1 1610 171 103 109 chrX 26227389 26227924 -150746216 - MLT1F1 LTR MaLR 0 595 18 602 300 66 70 chrX 26227988 26228589 -150745551 - L1MC4a LINE L1 -313 5808 5455 1831 114 0 4 chrX 26228996 26229242 -150744898 - AluSg SINE Alu -65 245 1 1795 139 10 42 chrX 26229243 26229576 -150744564 - AluSq SINE Alu 0 313 1 31 0 0 0 chrX 26229792 26229823 -150744317 + AT_rich Low_complexity Low_complexity 1 31 0 2482 64 0 7 chrX 26229823 26230119 -150744021 - AluSq SINE Alu -19 294 1 1203 240 101 21 chrX 26230259 26230596 -150743544 - LTR16A LTR ERVL 0 450 87 310 221 74 0 chrX 26230782 26230896 -150743244 - MLT1J LTR MaLR -327 288 104 312 298 118 52 chrX 26231008 26231297 -150742843 - L1ME3 LINE L1 -281 5840 5533 2136 105 14 0 chrX 26231307 26231593 -150742547 - AluSg SINE Alu -19 291 2 974 120 7 7 chrX 26231640 26231790 -150742350 + FRAM SINE Alu 22 171 -5 446 108 0 0 chrX 26231795 26231860 -150742280 - Alu SINE Alu -11 300 236 404 193 0 36 chrX 26231988 26232071 -150742069 - MLT1H LTR MaLR -375 174 95 304 289 44 0 chrX 26232085 26232175 -150741965 - L1ME3 LINE L1 -2192 5616 5523 21 82 0 0 chrX 26232343 26232392 -150741748 + AT_rich Low_complexity Low_complexity 1 49 0 2324 83 0 0 chrX 26232554 26232844 -150741296 - AluY SINE Alu -21 290 1 1003 211 65 80 chrX 26233117 26233516 -150740624 - MLT1J1 LTR MaLR -52 394 2 1001 248 232 3 chrX 26233517 26233836 -150740304 - L2 LINE L2 -720 2594 2203 615 179 95 48 chrX 26233876 26234044 -150740096 + MER104 DNA MER2_type 5 180 0 183 130 0 87 chrX 26234071 26234117 -150740023 - MIR SINE MIR -16 246 205 685 269 58 24 chrX 26234143 26234351 -150739789 + MIR SINE MIR 3 217 -45 251 206 88 15 chrX 26234354 26234422 -150739718 + MIR SINE MIR 190 262 0 2195 88 0 17 chrX 26234448 26234745 -150739395 + AluSx SINE Alu 1 292 -20 393 251 68 12 chrX 26234758 26234921 -150739219 + L1M4 LINE L1 3497 3668 -2478 654 270 28 17 chrX 26234929 26235107 -150739033 - MIR SINE MIR -63 199 20 281 191 0 0 chrX 26235114 26235182 -150738958 - L1MA7 LINE L1 0 6291 6224 2156 103 3 3 chrX 26235368 26235659 -150738481 - AluSg SINE Alu -15 295 5 2210 127 0 0 chrX 26235766 26236066 -150738074 - AluSx SINE Alu -12 300 1 955 185 52 30 chrX 26236711 26236979 -150737161 + LTR1B LTR ERV1 37 347 -479 183 167 0 0 chrX 26237442 26237484 -150736656 + A-rich Low_complexity Low_complexity 1 42 0 306 0 0 0 chrX 26239255 26239289 -150734851 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 229 208 83 0 chrX 26239378 26239426 -150734714 - MARNA DNA Mariner -252 334 283 2335 86 3 13 chrX 26239759 26240063 -150734077 - AluSp SINE Alu -12 301 1 674 261 44 0 chrX 26240166 26240346 -150733794 + MER5A DNA MER1_type 2 189 0 189 94 0 0 chrX 26241151 26241183 -150732957 + (A)n Simple_repeat Simple_repeat 1 32 0 2229 116 0 0 chrX 26241286 26241589 -150732551 - AluSq SINE Alu -10 303 1 461 205 251 67 chrX 26242295 26242392 -150731748 - MIR SINE MIR -2 260 182 1954 93 100 0 chrX 26242392 26242672 -150731468 - AluY SINE Alu -3 308 1 461 205 251 67 chrX 26242672 26242794 -150731346 - MIR SINE MIR -80 182 19 1958 143 73 55 chrX 26243231 26243512 -150730628 + L1MB5 LINE L1 5768 6060 -114 2505 52 0 0 chrX 26243512 26243801 -150730339 + AluY SINE Alu 5 293 -18 1958 143 73 55 chrX 26243801 26243918 -150730222 + L1MB5 LINE L1 6060 6173 -1 279 174 23 105 chrX 26244258 26244344 -150729796 + L2 LINE L2 3234 3312 -1 736 168 15 53 chrX 26244541 26244672 -150729468 - FLAM_C SINE Alu -15 128 3 3023 201 46 8 chrX 26245336 26245947 -150728193 - MER82 DNA MER2_type -8 645 12 2240 110 3 7 chrX 26246854 26247155 -150726985 - AluSx SINE Alu -12 300 1 1720 158 17 30 chrX 26247290 26247587 -150726553 - AluJo SINE Alu -19 293 1 2321 89 3 0 chrX 26247771 26248074 -150726066 + AluSq SINE Alu 1 304 -9 2021 92 43 0 chrX 26248585 26248866 -150725274 - AluSc SINE Alu -16 293 1 311 308 37 0 chrX 26249003 26249110 -150725030 + L2 LINE L2 1752 1862 -1452 736 283 201 48 chrX 26249171 26249981 -150724159 + L2 LINE L2 2037 2970 -344 995 237 49 89 chrX 26250180 26250231 -150723909 + MER46C DNA MER2_type 1 53 -285 2382 78 0 7 chrX 26250231 26250526 -150723614 - AluSg SINE Alu -17 293 1 995 237 49 89 chrX 26250526 26250548 -150723592 + MER46C DNA MER2_type 53 74 -264 2181 83 38 3 chrX 26250548 26250836 -150723304 - AluSx SINE Alu -14 298 1 995 237 49 89 chrX 26250836 26251111 -150723029 + MER46C DNA MER2_type 74 336 -2 1787 173 20 10 chrX 26251501 26251802 -150722338 - AluJo SINE Alu -8 304 1 269 419 0 7 chrX 26251889 26252025 -150722115 - MER5A DNA MER1_type -9 180 46 1797 162 0 14 chrX 26253610 26253900 -150720240 - AluJb SINE Alu -22 290 5 2062 102 9 65 chrX 26254423 26254746 -150719394 - AluSx SINE Alu -6 306 2 445 283 151 23 chrX 26255918 26256137 -150718003 - MIR SINE MIR 0 262 16 851 62 0 18 chrX 26257021 26257134 -150717006 - L1PA6 LINE L1 -3 6151 6041 485 165 0 24 chrX 26257847 26257931 -150716209 - MER58B DNA MER1_type -1 340 259 1608 126 103 4 chrX 26257931 26258192 -150715948 - MER47A DNA MER2_type 0 366 80 831 206 67 6 chrX 26258192 26258357 -150715783 - FAM SINE Alu 0 175 1 22 0 0 0 chrX 26259007 26259029 -150715111 + AT_rich Low_complexity Low_complexity 1 22 0 6774 54 14 32 chrX 26259032 26259940 -150714200 - SVA Other Other -3 1383 492 1587 197 13 22 chrX 26260217 26260532 -150713608 + AluJo SINE Alu 1 312 0 207 0 0 0 chrX 26260547 26260570 -150713570 + (GGAAA)n Simple_repeat Simple_repeat 2 24 0 1012 243 101 72 chrX 26261916 26262500 -150711640 + L1MC4 LINE L1 7300 7910 -132 2377 75 0 16 chrX 26262500 26262841 -150711299 + AluY SINE Alu 1 311 0 1012 243 101 72 chrX 26262841 26262977 -150711163 + L1MC4 LINE L1 7910 8041 -1 2104 112 31 0 chrX 26263183 26263470 -150710670 + AluSx SINE Alu 1 296 -16 970 223 92 121 chrX 26264015 26264123 -150710017 + L1MC5 LINE L1 7099 7209 -752 2224 109 16 3 chrX 26264123 26264427 -150709713 + AluSx SINE Alu 1 308 -4 1933 90 33 43 chrX 26264427 26264728 -150709412 + AluSx SINE Alu 1 298 -14 970 223 92 121 chrX 26264728 26265316 -150708824 + L1MC5 LINE L1 7208 7770 -191 2419 86 6 6 chrX 26265316 26265629 -150708511 + AluSq SINE Alu 1 313 0 970 223 92 121 chrX 26265629 26265773 -150708367 + L1MC5 LINE L1 7770 7917 -44 398 266 50 58 chrX 26266451 26266590 -150707550 + MIR SINE MIR 41 178 -84 1429 159 169 0 chrX 26266636 26266932 -150707208 - MER7A DNA MER2_type -1 345 2 1259 179 70 23 chrX 26266936 26267509 -150706631 + L1MB3 LINE L1 4900 5444 -739 2326 116 0 0 chrX 26267509 26267819 -150706321 + AluSx SINE Alu 1 310 -2 1259 179 70 23 chrX 26267819 26268332 -150705808 + L1MB3 LINE L1 5444 6182 -1 2268 116 0 0 chrX 26269525 26269818 -150704322 - AluSx SINE Alu -19 293 1 1056 141 0 0 chrX 26269949 26270098 -150704042 - AluJb SINE Alu -14 298 150 202 323 73 0 chrX 26271554 26271650 -150702490 + MIR SINE MIR 108 210 -52 2224 70 18 80 chrX 26271778 26272105 -150702035 + AluSq SINE Alu 1 307 -6 2403 94 10 0 chrX 26272293 26272602 -150701538 - AluSx SINE Alu 0 312 1 1688 156 3 20 chrX 26273484 26273779 -150700361 - AluJb SINE Alu -22 290 1 1585 119 8 27 chrX 26275715 26275975 -150698165 + MER1B DNA MER1_type 85 339 0 984 210 22 0 chrX 26275990 26276171 -150697969 + MER5A DNA MER1_type 3 187 -2 2326 102 0 0 chrX 26276172 26276475 -150697665 + AluSc SINE Alu 1 303 -6 361 325 0 17 chrX 26276599 26276719 -150697421 + L2 LINE L2 3189 3306 -7 353 304 78 9 chrX 26276723 26276838 -150697302 + L2 LINE L2 3181 3303 -10 2324 93 3 0 chrX 26276932 26277234 -150696906 - AluSp SINE Alu -10 303 1 843 208 19 0 chrX 26277674 26277828 -150696312 - FRAM SINE Alu -22 154 1 1778 156 3 7 chrX 26277835 26278118 -150696022 - AluJb SINE Alu -22 290 9 840 310 89 43 chrX 26278128 26278801 -150695339 + L2 LINE L2 2590 3298 -15 258 273 0 0 chrX 26278975 26279052 -150695088 - Charlie8 DNA MER1_type 0 2417 2341 186 313 54 62 chrX 26279171 26279283 -150694857 - L2 LINE L2 -188 3084 2974 * 540 365 60 0 chrX 26279264 26279497 -150694643 - L2 LINE L2 -493 2821 2575 314 125 42 83 chrX 26280106 26280157 -150693983 - MER46C DNA MER2_type -6 332 283 2372 95 0 3 chrX 26280157 26280461 -150693679 - AluSq SINE Alu -10 303 1 314 125 42 83 chrX 26280461 26280481 -150693659 - MER46C DNA MER2_type -55 283 264 21 0 0 0 chrX 26283656 26283677 -150690463 + AT_rich Low_complexity Low_complexity 1 21 0 836 190 0 0 chrX 26283695 26283837 -150690303 - FRAM SINE Alu -39 137 1 1407 207 109 41 chrX 26283935 26284374 -150689766 + L1ME1 LINE L1 5627 6104 -62 2139 96 3 23 chrX 26284374 26284676 -150689464 + AluSx SINE Alu 1 296 -16 1407 207 109 41 chrX 26284676 26284723 -150689417 + L1ME1 LINE L1 6104 6146 -20 450 238 26 79 chrX 26285916 26286181 -150687959 - L1MC5 LINE L1 -50 7911 7661 200 222 0 19 chrX 26287309 26287363 -150686777 + A-rich Low_complexity Low_complexity 2 54 0 207 125 0 0 chrX 26287665 26287705 -150686435 + (A)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chrX 26288213 26288236 -150685904 + AT_rich Low_complexity Low_complexity 1 23 0 2348 90 0 0 chrX 26288270 26288569 -150685571 + AluSq SINE Alu 3 301 -12 31 26 0 0 chrX 26288700 26288738 -150685402 + AT_rich Low_complexity Low_complexity 1 38 0 1698 144 25 21 chrX 26289121 26289405 -150684735 - AluJb SINE Alu -14 298 14 1293 166 36 61 chrX 26289648 26289758 -150684382 + AluJo SINE Alu 37 148 -164 2322 102 0 6 chrX 26289758 26290071 -150684069 + AluSx SINE Alu 1 311 -1 1293 166 36 61 chrX 26290071 26290238 -150683902 + AluJo SINE Alu 148 307 -5 405 259 104 0 chrX 26290248 26290383 -150683757 + MIR SINE MIR 71 219 -43 193 246 0 16 chrX 26290595 26290656 -150683484 + MIR SINE MIR 160 219 -43 459 329 93 14 chrX 26290754 26290970 -150683170 - MIR SINE MIR -10 252 20 282 287 66 0 chrX 26291435 26291557 -150682583 + HAL1 LINE L1 11 140 -2367 5058 136 46 42 chrX 26291903 26293090 -150681050 + L1M2 LINE L1 4293 5466 -745 2288 93 3 13 chrX 26293110 26293422 -150680718 + AluSq SINE Alu 5 313 0 2571 214 124 31 chrX 26293431 26294461 -150679679 + L1MC4 LINE L1 6772 7897 -145 236 242 0 15 chrX 26295383 26295449 -150678691 + L1MC4 LINE L1 6463 6527 -1515 1277 74 6 0 chrX 26295449 26295611 -150678529 + AluSg/x SINE Alu 134 296 -16 1396 214 80 36 chrX 26295611 26295962 -150678178 + L1MC4 LINE L1 6527 6861 -1181 1870 157 3 20 chrX 26295962 26296268 -150677872 - AluJo SINE Alu -11 301 1 1396 214 80 36 chrX 26296268 26296512 -150677628 + L1MC4 LINE L1 6861 7093 -949 1977 117 46 0 chrX 26296512 26296794 -150677346 - AluSx SINE Alu -17 295 1 1396 214 80 36 chrX 26296794 26297120 -150677020 + L1MC4 LINE L1 7093 7647 -395 833 207 56 95 chrX 26297122 26297284 -150676856 + MER2 DNA MER2_type 1 168 -177 1924 138 80 12 chrX 26297284 26297610 -150676530 - MER7A DNA MER2_type 0 346 1 833 207 56 95 chrX 26297610 26297805 -150676335 + MER2 DNA MER2_type 168 344 -1 286 314 105 16 chrX 26297823 26298014 -150676126 + L1MC4 LINE L1 7680 7887 -155 412 279 213 15 chrX 26298226 26298767 -150675373 + HAL1 LINE L1 1016 1663 -844 317 298 118 22 chrX 26298917 26299095 -150675045 + HAL1 LINE L1 2219 2413 -94 1142 225 102 19 chrX 26299131 26299446 -150674694 - MER58B DNA MER1_type 0 341 1 1013 181 0 11 chrX 26300143 26300320 -150673820 - FRAM SINE Alu -2 174 1 1076 205 76 9 chrX 26300376 26300600 -150673540 - MER8 DNA MER2_type 0 239 1 190 350 90 50 chrX 26300766 26300866 -150673274 + L2 LINE L2 3137 3240 -32 237 329 26 0 chrX 26301145 26301221 -150672919 + L2 LINE L2 3234 3311 -2 282 180 0 33 chrX 26301648 26301709 -150672431 - Tigger4(Zombi) DNA MER2_type 0 2731 2673 226 132 0 26 chrX 26301687 26301725 -150672415 - Tigger4(Zombi) DNA MER2_type -2694 37 1 * 2162 103 20 3 chrX 26301751 26302043 -150672097 + AluSq SINE Alu 1 297 -16 25 0 0 0 chrX 26302059 26302084 -150672056 + AT_rich Low_complexity Low_complexity 1 25 0 766 169 8 0 chrX 26302232 26302362 -150671778 + FLAM_C SINE Alu 1 131 -2 1640 181 48 10 chrX 26302711 26303004 -150671136 + AluJo SINE Alu 1 304 -8 198 278 14 42 chrX 26305820 26305892 -150668248 - L2 LINE L2 0 3272 3203 1830 130 0 0 chrX 26305981 26306234 -150667906 + AluSx SINE Alu 1 253 -59 254 382 123 20 chrX 26306691 26306895 -150667245 + MIR SINE MIR 20 244 -18 2228 97 17 0 chrX 26307337 26307636 -150666504 + AluSc SINE Alu 1 304 -5 1745 149 64 4 chrX 26307756 26308037 -150666103 - AluJb SINE Alu -14 298 1 803 110 8 36 chrX 26309630 26309871 -150664269 + AluJo SINE Alu 13 305 -7 2357 92 13 0 chrX 26309871 26310177 -150663963 + AluSx SINE Alu 1 310 -2 425 209 37 105 chrX 26310180 26310371 -150663769 - L1MC4 LINE L1 -52 7990 7813 331 217 250 53 chrX 26310405 26310557 -150663583 - MER20 DNA MER1_type 0 219 38 554 234 134 19 chrX 26310583 26310852 -150663288 - L1MC4 LINE L1 -295 7747 7448 630 138 60 0 chrX 26310854 26310970 -150663170 - L1MC4 LINE L1 -697 7345 7223 213 39 0 0 chrX 26311170 26311196 -150662944 + (TA)n Simple_repeat Simple_repeat 1 26 0 380 162 135 9 chrX 26311507 26311618 -150662522 - L1MB7 LINE L1 -37 6958 6834 470 175 92 35 chrX 26311652 26311683 -150662457 - L1MB7 LINE L1 -240 6749 6721 2075 120 20 0 chrX 26311683 26311983 -150662157 + AluSx SINE Alu 1 306 -6 470 175 92 35 chrX 26311983 26312403 -150661737 - L1MB7 LINE L1 -268 6721 6107 * 1044 216 22 11 chrX 26312394 26312672 -150661468 - L1MB7 LINE L1 -1982 4975 4695 305 89 0 0 chrX 26312718 26312763 -150661377 + Charlie3 DNA MER1_type 37 81 -2629 * 534 78 0 13 chrX 26312762 26312839 -150661301 + Charlie3 DNA MER1_type 2627 2702 -8 1699 245 113 41 chrX 26312883 26313888 -150660252 - L1MB7 LINE L1 -4615 2344 1259 2604 300 41 32 chrX 26314524 26315460 -150658680 - L1MB7 LINE L1 -5914 945 2 754 205 76 5 chrX 26315526 26315711 -150658429 - L1MC4 LINE L1 -1025 7017 6820 181 120 0 0 chrX 26316731 26316756 -150657384 - MIR SINE MIR -26 236 212 248 283 33 0 chrX 26316759 26316819 -150657321 - MIR SINE MIR -156 106 45 193 333 133 28 chrX 26319429 26319499 -150654641 - MIR3 SINE MIR -6 202 141 2231 104 7 0 chrX 26319499 26319807 -150654333 - AluSx SINE Alu -2 310 1 193 333 133 28 chrX 26319807 26319916 -150654224 - MIR3 SINE MIR -67 141 4 2380 71 0 7 chrX 26321499 26321794 -150652346 + AluSx SINE Alu 1 293 -19 331 269 19 0 chrX 26321840 26321944 -150652196 - L1ME LINE L1 -420 5701 5596 185 184 53 0 chrX 26322614 26322652 -150651488 + MIR3 SINE MIR 164 203 -5 372 192 0 27 chrX 26323420 26323493 -150650647 + MER20 DNA MER1_type 67 137 -82 778 144 2 14 chrX 26323540 26323680 -150650460 + MSTD LTR MaLR 277 393 -3 2320 103 3 0 chrX 26323754 26324054 -150650086 + AluSx SINE Alu 3 303 -9 21 0 0 0 chrX 26324308 26324329 -150649811 + AT_rich Low_complexity Low_complexity 1 21 0 634 184 152 20 chrX 26324378 26324622 -150649518 + L1MC5 LINE L1 7452 7727 -234 376 240 72 72 chrX 26324635 26325004 -150649136 + L1ME LINE L1 5153 5516 -654 272 328 42 34 chrX 26325615 26325734 -150648406 - MER5A DNA MER1_type -9 180 61 750 257 121 52 chrX 26325843 26326248 -150647892 - L1ME3A LINE L1 -207 5963 5531 1100 110 7 0 chrX 26327131 26327285 -150646855 + AluSq SINE Alu 147 301 -12 266 222 159 8 chrX 26328600 26328726 -150645414 - MIR SINE MIR -13 249 105 755 117 25 17 chrX 26329018 26329138 -150645002 - FLAM_C SINE Alu -14 129 9 354 222 148 0 chrX 26329181 26329289 -150644851 - MER5C DNA MER1_type -200 124 1 2098 118 16 10 chrX 26331821 26332127 -150642013 - AluSq SINE Alu -5 308 1 33 0 0 0 chrX 26333915 26333948 -150640192 + AT_rich Low_complexity Low_complexity 1 33 0 2048 133 0 7 chrX 26335044 26335353 -150638787 + AluSx SINE Alu 1 307 -5 2270 78 0 0 chrX 26335575 26335856 -150638284 + AluSx SINE Alu 1 281 -31 273 234 13 13 chrX 26335907 26335984 -150638156 + HsTC2 DNA Tc2 3 79 -1819 424 309 64 60 chrX 26336022 26336287 -150637853 - L1MEd LINE L1 -5494 625 360 338 243 0 0 chrX 26336331 26336405 -150637735 + HsTC2 DNA Tc2 1824 1897 -1 210 287 53 53 chrX 26336406 26336500 -150637640 - MIR SINE MIR -160 102 9 1643 95 44 5 chrX 26337551 26338144 -150635996 + L1MA3 LINE L1 5636 6300 -5 26 50 0 0 chrX 26338148 26338188 -150635952 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chrX 26338735 26338757 -150635383 + AT_rich Low_complexity Low_complexity 1 22 0 1455 157 44 68 chrX 26338757 26338902 -150635238 + AluJb SINE Alu 1 137 -175 2651 55 0 0 chrX 26338902 26339209 -150634931 + AluSq SINE Alu 1 307 -6 1455 157 44 68 chrX 26339209 26339357 -150634783 + AluJb SINE Alu 137 287 -25 35 24 0 0 chrX 26340139 26340181 -150633959 + AT_rich Low_complexity Low_complexity 1 42 0 2327 103 0 0 chrX 26340481 26340791 -150633349 + AluSx SINE Alu 3 312 0 1856 76 13 0 chrX 26340791 26341027 -150633113 + AluSc SINE Alu 71 309 0 23 0 0 0 chrX 26341214 26341237 -150632903 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 26341277 26341298 -150632842 + AT_rich Low_complexity Low_complexity 1 21 0 1837 168 30 30 chrX 26342613 26342952 -150631188 - MER2 DNA MER2_type -6 339 1 483 259 153 23 chrX 26342981 26343197 -150630943 - MIR SINE MIR -17 245 2 355 283 177 27 chrX 26344027 26344508 -150629632 - L1ME4a LINE L1 -54 6067 5515 349 220 0 22 chrX 26345664 26345755 -150628385 + L1M4 LINE L1 3034 3122 -3024 333 0 0 0 chrX 26345785 26345822 -150628318 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 360 0 0 0 chrX 26345821 26345861 -150628279 + (TG)n Simple_repeat Simple_repeat 2 41 0 462 272 88 28 chrX 26345943 26346130 -150628010 + L1M4 LINE L1 3283 3457 -2689 2181 99 0 10 chrX 26346130 26346423 -150627717 + AluSg SINE Alu 1 290 -20 462 272 88 28 chrX 26346423 26346599 -150627541 + L1M4 LINE L1 3457 3668 -2478 668 270 28 17 chrX 26346607 26346785 -150627355 - MIR SINE MIR -63 199 20 256 182 0 0 chrX 26346794 26346860 -150627280 - L1MA7 LINE L1 -2 6289 6224 2158 100 3 3 chrX 26347046 26347337 -150626803 - AluSg SINE Alu -15 295 5 2191 127 0 0 chrX 26347444 26347744 -150626396 - AluSx SINE Alu -12 300 1 2062 163 153 38 chrX 26348389 26349055 -150625085 + LTR1B LTR ERV1 37 826 0 667 207 96 0 chrX 26349226 26349361 -150624779 + MLT1B LTR MaLR 187 334 -56 546 270 22 56 chrX 26349650 26349828 -150624312 + MER5B DNA MER1_type 1 172 -6 297 236 164 68 chrX 26350000 26350220 -150623920 - MIR SINE MIR -2 260 20 2011 118 0 33 chrX 26350359 26350664 -150623476 + AluSx SINE Alu 4 298 -14 2299 78 0 3 chrX 26350707 26351001 -150623139 + AluY SINE Alu 1 293 -18 494 242 127 6 chrX 26351166 26351331 -150622809 - MIR SINE MIR -76 186 2 241 218 57 76 chrX 26351334 26351498 -150622642 + L1ME LINE L1 5391 5553 -613 1293 81 0 0 chrX 26351664 26351825 -150622315 - AluSg/x SINE Alu -19 291 131 560 140 11 0 chrX 26352181 26352274 -150621866 - AluJ/FLAM SINE Alu -218 94 1 307 316 35 35 chrX 26352455 26352626 -150621514 + L2 LINE L2 1890 2060 -1254 2000 131 58 53 chrX 26352983 26353348 -150620792 + L1MB3 LINE L1 5765 6127 -56 2274 104 3 0 chrX 26353348 26353645 -150620495 + AluSx SINE Alu 1 298 -14 2198 82 61 0 chrX 26353646 26353939 -150620201 + AluY SINE Alu 1 311 0 2000 131 58 53 chrX 26353939 26353984 -150620156 + L1MB3 LINE L1 6126 6179 -4 380 324 7 34 chrX 26355765 26355913 -150618227 - L2 LINE L2 -2 3311 3168 2346 107 0 0 chrX 26356254 26356564 -150617576 - AluSg SINE Alu 0 310 1 792 130 70 32 chrX 26356569 26356724 -150617416 - Tigger2 DNA MER2_type -65 2653 2488 2075 113 10 19 chrX 26356724 26357034 -150617106 + AluSx SINE Alu 6 312 0 792 130 70 32 chrX 26357034 26357063 -150617077 - Tigger2 DNA MER2_type -230 2488 2462 4017 117 56 55 chrX 26357117 26357869 -150616271 - Tigger2 DNA MER2_type -1964 754 2 2226 93 7 0 chrX 26358006 26358308 -150615832 + AluY SINE Alu 1 304 -7 275 310 84 45 chrX 26358939 26359094 -150615046 - MIR SINE MIR -18 244 84 250 298 98 71 chrX 26359320 26359360 -150614780 + L2 LINE L2 2713 2750 -564 2370 83 3 0 chrX 26359360 26359660 -150614480 + AluSp SINE Alu 1 301 -12 250 298 98 71 chrX 26359660 26359844 -150614296 + L2 LINE L2 2750 2943 -371 246 293 13 27 chrX 26359975 26360050 -150614090 + L2 LINE L2 3179 3252 -61 1529 170 85 51 chrX 26360079 26360432 -150613708 - MLT1A1 LTR MaLR 0 365 1 407 231 322 25 chrX 26360833 26361032 -150613108 - MIR SINE MIR -1 261 4 706 181 0 0 chrX 26361273 26361389 -150612751 + FLAM_A SINE Alu 1 116 -17 3779 195 117 24 chrX 26362214 26364185 -150609955 + L1M4b LINE L1 11 2182 -4777 1083 97 0 0 chrX 26364187 26364321 -150609819 + AluSq/x SINE Alu 2 135 -177 2377 97 3 0 chrX 26364321 26364630 -150609510 + AluSg SINE Alu 1 310 0 2353 97 3 3 chrX 26364674 26364982 -150609158 + AluSx SINE Alu 1 308 -4 3759 159 62 18 chrX 26365197 26366168 -150607972 + L1MB4 LINE L1 4978 5980 -200 1912 127 7 20 chrX 26367134 26367426 -150606714 + AluJb SINE Alu 1 288 -24 2279 103 0 3 chrX 26368411 26368712 -150605428 + AluSx SINE Alu 1 300 -12 2029 127 7 17 chrX 26368870 26369169 -150604971 - AluSx SINE Alu -16 296 1 1119 138 78 47 chrX 26369328 26369738 -150604402 - L1MB8 LINE L1 0 6178 5733 519 106 0 24 chrX 26369806 26369891 -150604249 - Alu SINE Alu -2 307 225 668 129 0 0 chrX 26369894 26369987 -150604153 + AluSq SINE Alu 141 233 -80 1500 109 0 41 chrX 26369987 26370207 -150603933 - AluSg SINE Alu -99 211 1 27 49 0 0 chrX 26370362 26370403 -150603737 + AT_rich Low_complexity Low_complexity 1 41 0 2178 108 3 0 chrX 26370562 26370849 -150603291 + AluSq SINE Alu 4 291 -22 25 0 0 0 chrX 26370849 26370874 -150603266 + AT_rich Low_complexity Low_complexity 1 25 0 748 284 70 8 chrX 26371046 26371289 -150602851 + MIR SINE MIR 5 262 0 368 163 353 13 chrX 26371409 26371562 -150602578 + L1MC5 LINE L1 7721 7925 -36 1200 146 0 0 chrX 26371623 26371788 -150602352 - AluSc SINE Alu -144 165 1 2083 214 122 42 chrX 26371908 26372261 -150601879 + L1ME3 LINE L1 5367 5690 -472 1625 174 0 56 chrX 26372261 26372582 -150601558 + AluJb SINE Alu 1 303 -9 2083 214 122 42 chrX 26372582 26372660 -150601480 + L1ME3 LINE L1 5690 5760 -402 2085 104 38 0 chrX 26372660 26372949 -150601191 + AluSg SINE Alu 1 300 -10 2083 214 122 42 chrX 26372949 26373065 -150601075 + L1ME3 LINE L1 5760 5865 -297 2373 93 3 0 chrX 26373065 26373365 -150600775 + AluSx SINE Alu 1 301 -11 2083 214 122 42 chrX 26373365 26373550 -150600590 + L1ME3 LINE L1 5865 6160 -2 2231 146 92 9 chrX 26373627 26374071 -150600069 + Charlie1b DNA MER1_type 37 517 -6 228 240 106 123 chrX 26374622 26374765 -150599375 - MIR3 SINE MIR -13 195 54 1989 140 13 3 chrX 26374765 26375072 -150599068 + AluSx SINE Alu 1 310 -2 228 240 106 123 chrX 26375072 26375107 -150599033 - MIR3 SINE MIR -154 54 20 743 140 281 6 chrX 26375972 26376143 -150597997 + MER20 DNA MER1_type 2 219 0 393 105 0 18 chrX 26376387 26376444 -150597696 + MER46A DNA MER2_type 1 56 -180 2373 73 0 16 chrX 26376445 26376748 -150597392 - AluSx SINE Alu -14 298 1 484 160 101 42 chrX 26376752 26376871 -150597269 + MER46A DNA MER2_type 104 229 -7 2300 103 3 0 chrX 26377031 26377331 -150596809 + AluSq SINE Alu 3 303 -10 1943 82 8 0 chrX 26377862 26378105 -150596035 + AluSp SINE Alu 1 245 -68 682 279 75 9 chrX 26378106 26378332 -150595808 - Tigger8 DNA MER2_type -378 288 48 1390 191 35 17 chrX 26378337 26378625 -150595515 + AluJo SINE Alu 1 293 -19 1258 163 183 44 chrX 26378640 26378978 -150595162 + MER58D DNA MER1_type 2 386 0 329 208 42 73 chrX 26379724 26379820 -150594320 + MIR3 SINE MIR 89 181 -27 273 207 69 0 chrX 26379917 26379975 -150594165 - L2 LINE L2 -8 3264 3203 241 169 0 92 chrX 26380378 26380443 -150593697 - MIR3 SINE MIR -15 193 135 297 228 0 0 chrX 26380469 26380526 -150593614 + L2 LINE L2 3256 3312 -1 1428 162 60 36 chrX 26381298 26381600 -150592540 + AluJb SINE Alu 1 309 -3 678 221 16 79 chrX 26382399 26382589 -150591551 + MER5B DNA MER1_type 1 178 0 1812 77 57 0 chrX 26383260 26383508 -150590632 + AluY SINE Alu 40 301 -10 24 0 0 0 chrX 26384993 26385017 -150589123 + GC_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 26385212 26385243 -150588897 + GC_rich Low_complexity Low_complexity 1 31 0 369 109 0 0 chrX 26386086 26386141 -150587999 + (CGG)n Simple_repeat Simple_repeat 2 56 0 239 273 13 0 chrX 26386214 26386291 -150587849 + C-rich Low_complexity Low_complexity 6 83 0 5831 159 62 12 chrX 26387965 26388743 -150585397 + L1MB4 LINE L1 4083 4821 -1359 180 0 0 0 chrX 26388743 26388763 -150585377 + (TA)n Simple_repeat Simple_repeat 2 21 0 5831 159 62 12 chrX 26388763 26389973 -150584167 + L1MB4 LINE L1 4821 6180 0 570 216 108 0 chrX 26391102 26391241 -150582899 + MER69 DNA AcHobo 1910 2063 -463 2205 126 0 0 chrX 26392538 26392848 -150581292 + AluSg SINE Alu 1 310 0 414 0 0 0 chrX 26393216 26393262 -150580878 + (TG)n Simple_repeat Simple_repeat 2 47 0 2195 92 7 23 chrX 26393267 26393571 -150580569 - AluSx SINE Alu -13 299 1 371 148 78 87 chrX 26394672 26394707 -150579433 + MER69 DNA AcHobo 2054 2088 -438 2376 73 0 13 chrX 26394707 26395010 -150579130 + AluSg SINE Alu 1 299 -11 371 148 78 87 chrX 26395010 26395073 -150579067 + MER69 DNA AcHobo 2088 2153 -373 2123 85 16 41 chrX 26395073 26395392 -150578748 + AluY SINE Alu 1 311 0 371 148 78 87 chrX 26395392 26395407 -150578733 + MER69 DNA AcHobo 2153 2167 -359 897 171 70 0 chrX 26395413 26395600 -150578540 + MER69 DNA AcHobo 2327 2526 0 1141 177 129 16 chrX 26395958 26396206 -150577934 + AluSg SINE Alu 21 296 -14 2249 106 0 25 chrX 26396210 26396531 -150577609 + AluSq SINE Alu 1 313 0 28 0 0 0 chrX 26396733 26396761 -150577379 + AT_rich Low_complexity Low_complexity 1 28 0 2353 98 0 3 chrX 26397707 26398014 -150576126 + AluSq SINE Alu 1 306 -7 2490 143 96 67 chrX 26398014 26398375 -150575765 + L1MCa LINE L1 1887 2236 -4320 2001 152 0 10 chrX 26398375 26398685 -150575455 + AluJb SINE Alu 1 307 -5 2490 143 96 67 chrX 26398685 26398975 -150575165 + L1MCa LINE L1 2236 2605 -3951 1025 171 0 0 chrX 26398975 26399151 -150574989 + AluJb SINE Alu 134 309 -3 1854 81 100 8 chrX 26399189 26399471 -150574669 - AluSx SINE Alu 0 306 1 251 206 88 15 chrX 26399497 26399565 -150574575 - MIR SINE MIR 0 262 190 685 269 58 24 chrX 26399568 26399776 -150574364 - MIR SINE MIR -45 217 3 183 130 0 87 chrX 26399802 26399848 -150574292 + MIR SINE MIR 205 246 -16 615 179 95 48 chrX 26399875 26400043 -150574097 - MER104 DNA MER2_type 0 180 5 1001 248 232 3 chrX 26400083 26400402 -150573738 + L2 LINE L2 2203 2594 -720 1003 211 65 80 chrX 26400403 26400802 -150573338 + MLT1J1 LTR MaLR 2 394 -52 2403 85 0 0 chrX 26401075 26401369 -150572771 + AluSg SINE Alu 1 294 -16 2768 172 17 2 chrX 26401375 26401905 -150572235 + L1PA10 LINE L1 4826 5363 -783 942 166 0 0 chrX 26401919 26402070 -150572070 + L1PA10 LINE L1 5998 6148 -20 210 37 0 0 chrX 26402072 26402099 -150572041 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 615 60 0 0 chrX 26402100 26402184 -150571956 + L1PA15 LINE L1 5357 5440 -725 976 76 0 0 chrX 26402236 26402354 -150571786 + AluSg SINE Alu 1 118 -192 4815 130 22 11 chrX 26402354 26402377 -150571763 + L1PA15 LINE L1 5415 5436 -729 2384 72 0 33 chrX 26402377 26402684 -150571456 + AluSg SINE Alu 1 297 -13 4815 130 22 11 chrX 26402684 26403399 -150570741 + L1PA15 LINE L1 5436 6161 -4 560 271 79 11 chrX 26403496 26403673 -150570467 + REP3 LTR ERV 1 189 -373 458 214 117 28 chrX 26404062 26404207 -150569933 + L2 LINE L2 2807 2964 -349 852 243 6 0 chrX 26404812 26404985 -150569155 - FAM SINE Alu 0 175 2 2259 104 13 3 chrX 26404999 26405308 -150568832 - AluSx SINE Alu 0 312 1 216 0 0 0 chrX 26405318 26405342 -150568798 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2177 109 3 7 chrX 26405342 26405625 -150568515 - AluSx SINE Alu -28 284 1 2126 131 0 0 chrX 26405643 26405941 -150568199 - AluSx SINE Alu -14 298 1 2405 82 7 7 chrX 26405998 26406303 -150567837 - AluSp SINE Alu -8 305 1 456 201 8 44 chrX 26406307 26406458 -150567682 - L1ME3 LINE L1 0 6162 6017 1211 233 124 79 chrX 26406458 26407442 -150566698 - L1MC5 LINE L1 -786 7175 6163 2188 99 0 7 chrX 26407461 26407744 -150566396 + AluSg SINE Alu 1 281 -29 185 0 40 0 chrX 26407744 26407769 -150566371 + (TA)n Simple_repeat Simple_repeat 2 27 0 1714 168 106 117 chrX 26407808 26408337 -150565803 - MLT1F1 LTR MaLR -2 565 18 547 309 60 73 chrX 26408401 26408846 -150565294 - L1MC4a LINE L1 -1761 6047 5609 2290 88 3 3 chrX 26408846 26409141 -150564999 - AluSg SINE Alu -15 295 1 547 309 60 73 chrX 26409141 26409241 -150564899 - L1MC4a LINE L1 -2199 5609 5509 729 80 0 0 chrX 26409286 26409374 -150564766 - AluSg SINE Alu -221 89 2 479 231 8 30 chrX 26409427 26409561 -150564579 - L1ME3 LINE L1 0 6162 6032 2074 114 0 0 chrX 26409618 26409898 -150564242 - AluSx SINE Alu -32 280 1 884 335 58 30 chrX 26409898 26410642 -150563498 - L1MC4a LINE L1 -881 6927 6163 2247 79 0 10 chrX 26410657 26410948 -150563192 - AluSx SINE Alu -24 288 1 1596 171 103 109 chrX 26410978 26411513 -150562627 - MLT1F1 LTR MaLR 0 595 18 602 300 66 70 chrX 26411577 26412178 -150561962 - L1MC4a LINE L1 -313 5808 5455 1854 110 0 4 chrX 26412585 26412831 -150561309 - AluSg SINE Alu -65 245 1 1795 139 10 42 chrX 26412832 26413165 -150560975 - AluSq SINE Alu 0 313 1 31 0 0 0 chrX 26413381 26413412 -150560728 + AT_rich Low_complexity Low_complexity 1 31 0 2345 71 3 10 chrX 26413412 26413708 -150560432 - AluSp SINE Alu -19 294 1 2036 97 0 72 chrX 26413929 26414250 -150559890 + AluSg1 SINE Alu 1 298 -11 968 121 7 7 chrX 26414257 26414406 -150559734 - FRAM SINE Alu -6 170 22 2136 105 14 0 chrX 26414453 26414739 -150559401 + AluSg SINE Alu 2 291 -19 312 298 118 52 chrX 26414749 26415038 -150559102 + L1ME LINE L1 5533 5840 -281 311 221 74 0 chrX 26415150 26415264 -150558876 + MLT1J LTR MaLR 104 288 -327 1270 244 98 15 chrX 26415450 26415786 -150558354 + LTR16A LTR ERVL 87 450 0 2007 113 61 0 chrX 26415926 26416219 -150557921 + AluSx SINE Alu 1 311 -1 599 249 131 22 chrX 26416230 26416685 -150557455 + L1ME4a LINE L1 5010 5517 -657 384 294 56 73 chrX 26416804 26416930 -150557210 + L1ME4a LINE L1 5791 5918 -203 2261 84 0 0 chrX 26416930 26417226 -150556914 - AluSp SINE Alu -17 296 1 384 294 56 73 chrX 26417226 26417448 -150556692 + L1ME4a LINE L1 5918 6120 -1 749 181 0 0 chrX 26417461 26417577 -150556563 - FLAM_C SINE Alu -25 118 3 2098 89 7 0 chrX 26417605 26417917 -150556223 - AluSp SINE Alu 0 314 1 215 227 0 0 chrX 26418030 26418074 -150556066 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 3537 206 47 27 chrX 26418187 26418537 -150555603 - L1ME2 LINE L1 -16 6148 5807 1921 198 116 34 chrX 26418537 26418859 -150555281 + MER34 LTR ERV1 1 380 -162 2116 103 0 29 chrX 26418859 26419169 -150554971 - AluSq SINE Alu -12 301 1 1921 198 116 34 chrX 26419169 26419347 -150554793 + MER34 LTR ERV1 380 542 0 3537 206 47 27 chrX 26419347 26419474 -150554666 - L1ME2 LINE L1 -357 5807 5684 2168 101 0 31 chrX 26419474 26419792 -150554348 - AluSg SINE Alu 0 310 3 3537 206 47 27 chrX 26419792 26420246 -150553894 - L1ME2 LINE L1 -480 5684 5198 198 0 0 0 chrX 26420251 26420273 -150553867 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2227 91 7 0 chrX 26420664 26420972 -150553168 - AluSx SINE Alu -2 310 1 1997 103 21 0 chrX 26424096 26424386 -150549754 + AluSx SINE Alu 1 296 -16 1914 77 48 11 chrX 26425106 26425402 -150548738 - AluY SINE Alu 0 306 1 2256 94 0 0 chrX 26425471 26425778 -150548362 - AluSx SINE Alu -1 311 5 2205 99 0 10 chrX 26425976 26426288 -150547852 + AluSq SINE Alu 1 309 -4 2344 60 40 0 chrX 26426333 26426633 -150547507 + AluSp SINE Alu 1 312 -1 2144 91 0 3 chrX 26427022 26427336 -150546804 + AluSq SINE Alu 1 313 0 2439 56 0 3 chrX 26427908 26428212 -150545928 + AluSp SINE Alu 1 303 -10 2170 108 14 0 chrX 26428592 26428889 -150545251 + AluSx SINE Alu 1 301 -11 2492 47 0 0 chrX 26428974 26429272 -150544868 + AluY SINE Alu 1 298 -13 1951 93 13 54 chrX 26429598 26429911 -150544229 + AluSx SINE Alu 1 300 -12 2479 77 0 0 chrX 26430054 26430387 -150543753 - AluSp SINE Alu 0 333 1 1086 60 0 0 chrX 26430630 26430763 -150543377 + AluSq/x SINE Alu 1 133 -179 1798 118 4 0 chrX 26430797 26431059 -150543081 + AluSg SINE Alu 1 263 -47 237 265 98 49 chrX 26432327 26432429 -150541711 - MIR SINE MIR -76 186 80 2367 78 10 0 chrX 26432459 26432766 -150541374 - AluSx SINE Alu -2 310 1 211 262 0 0 chrX 26433015 26433057 -150541083 - MIR SINE MIR -200 62 21 2244 109 0 0 chrX 26433218 26433530 -150540610 - AluSx SINE Alu 0 312 1 2308 67 0 3 chrX 26433732 26434029 -150540111 - AluY SINE Alu -14 297 2 854 143 0 0 chrX 26434793 26434919 -150539221 - AluSq/x SINE Alu -187 126 1 2190 75 0 0 chrX 26434980 26435285 -150538855 - AluSg SINE Alu 0 305 1 2108 108 0 16 chrX 26435345 26435661 -150538479 - AluSx SINE Alu -1 311 1 2359 86 0 0 chrX 26436332 26436636 -150537504 + AluSx SINE Alu 1 304 -8 2327 172 21 28 chrX 26437095 26437560 -150536580 + L1MB5 LINE L1 5713 6174 0 2102 117 3 3 chrX 26437567 26437876 -150536264 + AluSx SINE Alu 1 309 -3 1658 143 0 39 chrX 26437936 26438222 -150535918 - AluJb SINE Alu -20 292 18 834 82 65 80 chrX 26438222 26438405 -150535735 - L1MA2 LINE L1 -177 6127 5938 825 127 8 8 chrX 26438416 26438550 -150535590 - AluJo SINE Alu -178 134 1 2222 84 3 0 chrX 26438562 26438869 -150535271 - AluSx SINE Alu 0 308 1 1104 111 32 5 chrX 26440174 26440363 -150533777 - AluSg/x SINE Alu 0 312 119 2022 98 0 58 chrX 26440364 26440692 -150533448 - AluSq SINE Alu -4 309 1 270 0 0 0 chrX 26440699 26440729 -150533411 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2106 89 7 0 chrX 26440731 26441011 -150533129 - AluSp SINE Alu -31 282 1 2448 58 3 3 chrX 26441042 26441351 -150532789 + AluSp SINE Alu 1 309 -4 1785 132 14 0 chrX 26441352 26441632 -150532508 + AluSx SINE Alu 16 299 -13 255 224 0 0 chrX 26441659 26441708 -150532432 + MER69 DNA AcHobo 21 69 -2457 753 196 367 0 chrX 26441818 26442058 -150532082 + MER69 DNA AcHobo 330 657 -1869 1762 153 3 26 chrX 26442065 26442378 -150531762 + AluJo SINE Alu 7 312 0 3375 175 46 70 chrX 26442463 26442991 -150531149 + MER69 DNA AcHobo 1654 2193 -333 2263 92 0 13 chrX 26442991 26443305 -150530835 - AluSx SINE Alu -2 310 1 3375 175 46 70 chrX 26443305 26443597 -150530543 + MER69 DNA AcHobo 2193 2453 -73 968 110 0 22 chrX 26443597 26443733 -150530407 - FLAM_C SINE Alu 0 133 1 3375 175 46 70 chrX 26443733 26443804 -150530336 + MER69 DNA AcHobo 2453 2524 -2 247 288 0 27 chrX 26443804 26443877 -150530263 + (CATG)n Simple_repeat Simple_repeat 2 72 0 1664 93 86 32 chrX 26444834 26445113 -150529027 + AluSx SINE Alu 1 294 -18 254 220 0 0 chrX 26445232 26445291 -150528849 - MLT1H LTR MaLR -4 545 487 1745 138 7 7 chrX 26445292 26445581 -150528559 - AluJo SINE Alu -11 301 13 874 110 0 8 chrX 26445581 26445708 -150528432 - AluJo SINE Alu -174 138 13 896 249 185 25 chrX 26445708 26446102 -150528038 - MLT1H LTR MaLR -53 496 40 2255 83 7 0 chrX 26446153 26446442 -150527698 - AluSc SINE Alu -18 291 1 478 81 68 0 chrX 26446456 26446530 -150527610 - L1MB3 LINE L1 -9 6174 6096 1523 149 0 4 chrX 26446557 26446798 -150527342 - AluJo SINE Alu -72 240 1 1356 193 15 45 chrX 26446812 26446940 -150527200 - MER21A LTR ERV1 -472 459 342 2337 88 3 0 chrX 26446940 26447246 -150526894 + AluSx SINE Alu 1 307 -5 1356 193 15 45 chrX 26447246 26447382 -150526758 - MER21A LTR ERV1 -589 342 203 2558 150 17 37 chrX 26447382 26447691 -150526449 - MER65C LTR ERV1 0 461 162 2132 112 3 6 chrX 26447691 26448005 -150526135 + AluSq SINE Alu 1 313 0 2558 150 17 37 chrX 26448005 26448155 -150525985 - MER65C LTR ERV1 -299 162 11 315 130 0 37 chrX 26448155 26448209 -150525931 + (TTTTC)n Simple_repeat Simple_repeat 4 55 0 744 88 10 78 chrX 26448211 26448403 -150525737 + (TTTCC)n Simple_repeat Simple_repeat 1 179 0 186 255 0 0 chrX 26448403 26448454 -150525686 + CT-rich Low_complexity Low_complexity 2 52 0 1518 157 50 4 chrX 26448459 26448721 -150525419 - AluJb SINE Alu -38 274 1 311 111 0 111 chrX 26448741 26448771 -150525369 - MER39 LTR ERV1 -371 336 315 2180 97 3 3 chrX 26448771 26449071 -150525069 - AluSc SINE Alu -9 300 1 311 111 0 111 chrX 26449071 26449103 -150525037 - MER39 LTR ERV1 -392 315 281 294 26 0 0 chrX 26449102 26449140 -150525000 - MSTB1 LTR MaLR -45 387 350 * 1612 151 198 22 chrX 26449178 26449536 -150524604 + MSTA LTR MaLR 4 424 -4 461 117 115 81 chrX 26449547 26449657 -150524483 - MER21A LTR ERV1 -541 166 70 2046 118 0 7 chrX 26449725 26450054 -150524086 - AluSx SINE Alu 0 327 1 385 139 0 28 chrX 26450100 26450172 -150523968 - MER21A LTR ERV1 -861 70 1 2090 95 3 41 chrX 26450241 26450557 -150523583 + AluSp SINE Alu 1 304 -9 3294 122 51 42 chrX 26450560 26450766 -150523374 + MER21B LTR ERV1 308 511 -352 2257 55 28 3 chrX 26450766 26451055 -150523085 - AluY SINE Alu -15 296 1 3294 122 51 42 chrX 26451055 26451398 -150522742 + MER21B LTR ERV1 511 862 -1 206 229 0 0 chrX 26451418 26451434 -150522706 + A-rich Low_complexity Low_complexity 1 16 -32 2110 109 6 10 chrX 26451434 26451747 -150522393 + AluSx SINE Alu 1 312 0 206 229 0 0 chrX 26451747 26451778 -150522362 + A-rich Low_complexity Low_complexity 15 48 0 2263 102 0 0 chrX 26452201 26452505 -150521635 + AluSx SINE Alu 1 304 -8 546 249 38 130 chrX 26452583 26453243 -150520897 - LTR38B LTR ERV1 0 610 12 1648 161 7 0 chrX 26453243 26453517 -150520623 - AluJb SINE Alu -36 276 1 1728 133 20 20 chrX 26453568 26453868 -150520272 + AluJo SINE Alu 1 300 -12 2125 102 0 3 chrX 26453941 26454262 -150519878 + AluSx SINE Alu 1 320 0 2345 60 6 19 chrX 26454263 26454578 -150519562 + AluY SINE Alu 1 311 0 1965 129 26 19 chrX 26454585 26454687 -150519453 + AluJb SINE Alu 1 101 -211 2021 100 106 32 chrX 26454687 26455026 -150519114 + THE1B LTR MaLR 1 364 0 1965 129 26 19 chrX 26455026 26455233 -150518907 + AluJb SINE Alu 101 312 0 2385 69 3 7 chrX 26455663 26455968 -150518172 - AluSp SINE Alu -9 304 1 1122 146 0 0 chrX 26456171 26456349 -150517791 - AluSg/x SINE Alu 0 312 135 2168 98 0 3 chrX 26456470 26456766 -150517374 + AluSx SINE Alu 1 295 -17 4457 123 10 30 chrX 26456849 26457270 -150516870 + L1MC1 LINE L1 5630 6033 -300 1873 156 0 6 chrX 26457270 26457584 -150516556 + AluJb SINE Alu 1 312 0 4457 123 10 30 chrX 26457584 26457869 -150516271 + L1MC1 LINE L1 6033 6322 -11 2009 92 10 44 chrX 26457870 26458014 -150516126 + AluSx SINE Alu 1 131 -181 2280 92 3 0 chrX 26458014 26458320 -150515820 + AluSp SINE Alu 1 307 -6 2009 92 10 44 chrX 26458320 26458469 -150515671 + AluSx SINE Alu 131 284 -28 180 0 0 0 chrX 26458469 26458489 -150515651 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 258 32 0 0 chrX 26458488 26458519 -150515621 + (TG)n Simple_repeat Simple_repeat 2 32 0 2015 138 0 19 chrX 26458526 26458844 -150515296 + AluSx SINE Alu 1 312 0 1934 94 65 0 chrX 26458854 26459129 -150515011 + AluSp SINE Alu 1 293 -20 28 29 0 0 chrX 26459129 26459164 -150514976 + AT_rich Low_complexity Low_complexity 1 35 0 1743 174 7 3 chrX 26459176 26459509 -150514631 + AluJo SINE Alu 1 334 0 2240 99 13 0 chrX 26459556 26459860 -150514280 + AluSx SINE Alu 1 308 -4 496 246 82 44 chrX 26459954 26460137 -150514003 + MLT1H LTR MaLR 102 291 -258 377 216 108 22 chrX 26460164 26460285 -150513855 + MLT1H LTR MaLR 305 545 -4 33 20 0 20 chrX 26460309 26460327 -150513813 + AT_rich Low_complexity Low_complexity 1 18 -32 2403 74 3 0 chrX 26460327 26460638 -150513502 + AluSp SINE Alu 2 313 0 33 20 0 20 chrX 26460638 26460670 -150513470 + AT_rich Low_complexity Low_complexity 18 50 0 298 141 141 113 chrX 26460670 26460722 -150513418 + L1MC5 LINE L1 7786 7835 -126 1624 132 71 25 chrX 26460722 26461002 -150513138 - AluJo SINE Alu -19 293 1 298 141 141 113 chrX 26461002 26461091 -150513049 + L1MC5 LINE L1 7835 7931 -30 2399 41 17 0 chrX 26461226 26461521 -150512619 - AluY SINE Alu -11 300 1 277 139 47 12 chrX 26462569 26462655 -150511485 + GA-rich Low_complexity Low_complexity 2 90 0 2495 136 66 11 chrX 26463583 26464025 -150510115 - L1MC1 LINE L1 0 6333 5868 2205 109 0 0 chrX 26464665 26464968 -150509172 - AluSx SINE Alu -9 303 1 1871 135 13 13 chrX 26464993 26465305 -150508835 - AluJo SINE Alu 0 312 1 204 125 0 0 chrX 26465313 26465345 -150508795 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2497 56 3 0 chrX 26465352 26465658 -150508482 - AluSp SINE Alu -5 308 2 260 291 35 0 chrX 26465684 26465770 -150508370 - AluYb8 SINE Alu -101 207 119 2313 89 0 0 chrX 26466107 26466409 -150507731 - AluSx SINE Alu -2 310 9 606 227 179 4 chrX 26466413 26466608 -150507532 - HERVL LTR ERVL -2301 3184 2951 1331 130 5 5 chrX 26466608 26466815 -150507325 - AluJb SINE Alu -22 290 84 2278 93 0 0 chrX 26466841 26467152 -150506988 - AluY SINE Alu 0 311 1 1863 132 27 3 chrX 26467366 26467661 -150506479 + AluJo SINE Alu 1 302 -10 968 132 20 0 chrX 26467661 26467813 -150506327 - MER68 LTR ERV1 -407 155 1 2171 96 17 0 chrX 26467954 26468247 -150505893 - AluSx SINE Alu -14 298 1 2178 91 0 0 chrX 26468291 26468620 -150505520 + AluSq SINE Alu 1 329 0 818 214 128 13 chrX 26468760 26468994 -150505146 + L1ME3A LINE L1 5890 6150 -20 1770 131 44 14 chrX 26469290 26469587 -150504553 + AluJo SINE Alu 1 306 -6 2306 97 3 0 chrX 26469587 26469896 -150504244 + AluSx SINE Alu 1 310 -2 593 185 179 0 chrX 26470220 26470371 -150503769 - MER5A DNA MER1_type -8 181 4 1641 142 44 41 chrX 26470603 26470898 -150503242 - AluJo SINE Alu -14 298 3 1749 123 33 14 chrX 26471265 26471399 -150502741 + AluSq SINE Alu 3 133 -170 2177 115 0 6 chrX 26471399 26471712 -150502428 + AluSx SINE Alu 1 311 -1 1749 123 33 14 chrX 26471712 26471873 -150502267 + AluSq SINE Alu 133 303 0 1918 146 8 35 chrX 26472010 26472386 -150501754 - pTR5 LTR ERV1 -1331 1107 742 351 271 135 23 chrX 26472398 26472531 -150501609 - MLT1J LTR MaLR -331 180 33 1533 182 111 14 chrX 26472619 26472988 -150501152 + L1M4 LINE L1 681 1085 -5457 406 71 98 107 chrX 26472992 26473068 -150501072 + L1MB8 LINE L1 6068 6144 -34 2027 122 3 0 chrX 26473068 26473372 -150500768 - AluSx SINE Alu -7 305 1 406 71 98 107 chrX 26473372 26473407 -150500733 + L1MB8 LINE L1 6144 6178 0 2321 79 3 9 chrX 26473420 26473735 -150500405 + AluSq SINE Alu 1 313 0 655 150 0 10 chrX 26473747 26473847 -150500293 + AluJb SINE Alu 37 135 -177 1937 132 3 0 chrX 26473847 26474135 -150500005 + AluSx SINE Alu 1 289 -23 331 245 21 32 chrX 26474147 26474241 -150499899 + L1ME1 LINE L1 5876 5968 -198 604 215 0 0 chrX 26474241 26474348 -150499792 + FLAM_C SINE Alu 2 108 -35 21 36 0 0 chrX 26474377 26474405 -150499735 + AT_rich Low_complexity Low_complexity 1 28 0 363 23 0 0 chrX 26474735 26474779 -150499361 + (CA)n Simple_repeat Simple_repeat 2 45 0 2120 110 0 0 chrX 26475593 26475885 -150498255 + AluSx SINE Alu 1 292 -20 1098 114 11 34 chrX 26475934 26476093 -150498047 + AluSg/x SINE Alu 139 295 -15 2288 93 3 0 chrX 26476093 26476404 -150497736 + AluSp SINE Alu 1 312 -1 1098 114 11 34 chrX 26476404 26476419 -150497721 + AluSg/x SINE Alu 295 309 -1 2074 133 12 3 chrX 26476422 26476754 -150497386 - L1MB3 LINE L1 -31 6152 5818 1250 118 11 0 chrX 26476790 26476968 -150497172 + AluJb SINE Alu 121 300 -12 398 128 139 35 chrX 26476969 26477055 -150497085 - L1MB3 LINE L1 -356 5824 5730 2000 128 20 0 chrX 26477068 26477365 -150496775 - AluSx SINE Alu -8 304 2 366 317 60 27 chrX 26478197 26478380 -150495760 + L1M4 LINE L1 3318 3506 -2640 264 273 0 0 chrX 26478405 26478460 -150495680 + polypurine Low_complexity Low_complexity 3 57 0 263 308 35 49 chrX 26478464 26478558 -150495582 + L1M4 LINE L1 3520 3613 -2533 2091 97 33 3 chrX 26478558 26478858 -150495282 + AluSg SINE Alu 1 309 -1 263 308 35 49 chrX 26478858 26478906 -150495234 + L1M4 LINE L1 3613 3660 -2486 746 67 0 0 chrX 26478910 26479000 -150495140 + 5S rRNA rRNA 1 90 -31 552 293 26 4 chrX 26479000 26479229 -150494911 + L1M4 LINE L1 3652 3885 -2261 256 208 21 0 chrX 26479255 26479303 -150494837 + MIR SINE MIR 45 93 -115 260 280 56 56 chrX 26479322 26479447 -150494693 + MIR3 SINE MIR 47 171 -37 1030 192 50 52 chrX 26479672 26479723 -150494417 + L1MC5 LINE L1 7256 7306 -655 1731 66 70 4 chrX 26479723 26479965 -150494175 + AluY SINE Alu 37 294 -17 1030 192 50 52 chrX 26479965 26479989 -150494151 + L1MC5 LINE L1 7306 7329 -632 1020 144 4 144 chrX 26479989 26480059 -150494081 - MER3 DNA MER1_type 0 209 131 1849 98 17 57 chrX 26480059 26480207 -150493933 + AluSx SINE Alu 1 133 -179 2220 91 0 7 chrX 26480207 26480505 -150493635 + AluSp SINE Alu 1 296 -17 1849 98 17 57 chrX 26480505 26480652 -150493488 + AluSx SINE Alu 133 284 -28 1020 144 4 144 chrX 26480652 26480824 -150493316 - MER3 DNA MER1_type -78 131 1 1030 192 50 52 chrX 26480824 26481090 -150493050 + L1MC5 LINE L1 7329 7597 -364 1102 96 0 0 chrX 26481094 26481240 -150492900 + AluSx SINE Alu 1 146 -167 4045 61 32 104 chrX 26481240 26481396 -150492744 - LTR66 LTR ERVL 0 610 444 459 0 0 0 chrX 26481396 26481447 -150492693 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 4045 61 32 104 chrX 26481447 26481773 -150492367 - LTR66 LTR ERVL -166 444 184 2174 78 34 0 chrX 26481773 26482068 -150492072 - AluSc SINE Alu -1 308 4 4045 61 32 104 chrX 26482068 26482235 -150491905 - LTR66 LTR ERVL -426 184 7 2060 112 3 3 chrX 26482237 26482532 -150491608 + AluSq SINE Alu 3 297 -16 1229 101 0 6 chrX 26482556 26482725 -150491415 + AluSx SINE Alu 142 309 -3 874 212 50 44 chrX 26482732 26482958 -150491182 + L1MC5 LINE L1 7603 7833 -128 1854 130 33 3 chrX 26482958 26483257 -150490883 - AluJo SINE Alu -4 308 1 874 212 50 44 chrX 26483257 26483351 -150490789 + L1MC5 LINE L1 7833 7925 -36 1795 136 0 63 chrX 26483359 26483676 -150490464 + AluJb SINE Alu 1 297 -15 2144 111 0 3 chrX 26483866 26484173 -150489967 + AluSx SINE Alu 1 306 -6 193 293 93 13 chrX 26484229 26484304 -150489836 + L3 LINE CR1 1092 1172 -405 1058 261 54 23 chrX 26484523 26484914 -150489226 + LTR16A1 LTR ERVL 55 457 0 2039 87 26 29 chrX 26485269 26485579 -150488561 - AluSc SINE Alu 0 309 1 2210 75 7 10 chrX 26485584 26485879 -150488261 - AluSq SINE Alu -19 294 1 2106 96 0 0 chrX 26485887 26486169 -150487971 + AluSx SINE Alu 14 295 -17 1983 142 0 0 chrX 26486570 26486879 -150487261 + AluSx SINE Alu 1 309 -3 1381 214 87 77 chrX 26486904 26487305 -150486835 + MLT2D LTR ERVL 2 406 -8 2160 105 3 0 chrX 26488044 26488339 -150485801 - AluSx SINE Alu -16 296 1 304 273 107 101 chrX 26489196 26489504 -150484636 - L3 LINE CR1 -334 1243 934 252 333 82 18 chrX 26489502 26489721 -150484419 + L2 LINE L2 2269 2501 -813 * 181 174 217 0 chrX 26491334 26491380 -150482760 - MIR SINE MIR -66 142 87 5769 158 63 13 chrX 26491434 26492212 -150481928 + L1MB4 LINE L1 4083 4821 -1359 180 0 0 0 chrX 26492212 26492232 -150481908 + (TA)n Simple_repeat Simple_repeat 2 21 0 5769 158 63 13 chrX 26492232 26493442 -150480698 + L1MB4 LINE L1 4821 6180 0 557 216 108 0 chrX 26494571 26494710 -150479430 + MER69 DNA AcHobo 1910 2063 -463 2117 123 0 0 chrX 26496007 26496317 -150477823 + AluSg SINE Alu 1 310 0 414 0 0 0 chrX 26496685 26496731 -150477409 + (TG)n Simple_repeat Simple_repeat 2 47 0 2098 92 7 23 chrX 26496736 26497041 -150477099 - AluSx SINE Alu -12 300 1 353 148 78 87 chrX 26498142 26498177 -150475963 + MER69 DNA AcHobo 2054 2088 -438 2271 73 0 13 chrX 26498177 26498480 -150475660 + AluSg SINE Alu 1 299 -11 353 148 78 87 chrX 26498480 26498543 -150475597 + MER69 DNA AcHobo 2088 2153 -373 2019 85 16 41 chrX 26498543 26498862 -150475278 + AluY SINE Alu 1 311 0 353 148 78 87 chrX 26498862 26498877 -150475263 + MER69 DNA AcHobo 2153 2167 -359 880 171 70 0 chrX 26498883 26499070 -150475070 + MER69 DNA AcHobo 2327 2526 0 1059 177 129 16 chrX 26499428 26499676 -150474464 + AluSg SINE Alu 21 296 -14 2147 106 0 25 chrX 26499680 26500001 -150474139 + AluSq SINE Alu 1 313 0 28 0 0 0 chrX 26500203 26500231 -150473909 + AT_rich Low_complexity Low_complexity 1 28 0 2250 98 0 3 chrX 26501177 26501484 -150472656 + AluSq SINE Alu 1 306 -7 2403 143 96 67 chrX 26501484 26501845 -150472295 + L1MCa LINE L1 1887 2236 -4320 1898 152 0 10 chrX 26501845 26502155 -150471985 + AluJb SINE Alu 1 307 -5 2403 143 96 67 chrX 26502155 26502445 -150471695 + L1MCa LINE L1 2236 2605 -3951 970 171 0 0 chrX 26502445 26502621 -150471519 + AluJb SINE Alu 134 309 -3 1739 85 100 8 chrX 26502659 26502941 -150471199 - AluSx SINE Alu 0 306 1 259 206 88 15 chrX 26502967 26503035 -150471105 - MIR SINE MIR 0 262 190 708 269 58 24 chrX 26503038 26503246 -150470894 - MIR SINE MIR -45 217 3 188 130 0 87 chrX 26503272 26503318 -150470822 + MIR SINE MIR 205 246 -16 571 179 95 48 chrX 26503345 26503513 -150470627 - MER104 DNA MER2_type 0 180 5 1017 248 232 3 chrX 26503553 26503872 -150470268 + L2 LINE L2 2203 2594 -720 1006 213 65 80 chrX 26503873 26504272 -150469868 + MLT1J1 LTR MaLR 2 394 -52 2296 85 0 0 chrX 26504545 26504839 -150469301 + AluSg SINE Alu 1 294 -16 2718 172 17 2 chrX 26504845 26505375 -150468765 + L1PA10 LINE L1 4826 5363 -783 951 166 0 0 chrX 26505389 26505540 -150468600 + L1PA10 LINE L1 5998 6148 -20 210 37 0 0 chrX 26505542 26505569 -150468571 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 606 60 0 0 chrX 26505570 26505654 -150468486 + L1PA15 LINE L1 5357 5440 -725 935 76 0 0 chrX 26505706 26505824 -150468316 + AluSg SINE Alu 1 118 -192 4548 131 22 11 chrX 26505824 26505847 -150468293 + L1PA15 LINE L1 5415 5436 -729 2269 72 0 33 chrX 26505847 26506154 -150467986 + AluSg SINE Alu 1 297 -13 4548 131 22 11 chrX 26506154 26506871 -150467269 + L1PA15 LINE L1 5436 6163 -2 579 271 79 11 chrX 26506966 26507143 -150466997 + REP3 LTR ERV 1 189 -373 466 222 96 54 chrX 26507532 26507699 -150466441 + L2 LINE L2 2807 2980 -333 791 243 6 0 chrX 26508283 26508456 -150465684 - FAM SINE Alu 0 175 2 2107 110 13 3 chrX 26508470 26508779 -150465361 - AluSx SINE Alu 0 312 1 216 0 0 0 chrX 26508789 26508813 -150465327 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2086 105 3 7 chrX 26508813 26509096 -150465044 - AluSx SINE Alu -28 284 1 1954 141 3 0 chrX 26509106 26509411 -150464729 - AluSx SINE Alu -6 306 1 2257 82 7 10 chrX 26509468 26509771 -150464369 - AluSp SINE Alu -11 302 1 430 197 7 44 chrX 26509775 26509912 -150464228 - L1ME3 LINE L1 0 6162 6031 1145 234 124 79 chrX 26509926 26510910 -150463230 - L1MC5 LINE L1 -786 7175 6163 2083 99 0 7 chrX 26510929 26511212 -150462928 + AluSg SINE Alu 1 281 -29 185 0 40 0 chrX 26511212 26511237 -150462903 + (TA)n Simple_repeat Simple_repeat 2 27 0 1726 170 106 117 chrX 26511276 26511805 -150462335 - MLT1F1 LTR MaLR -2 565 18 472 311 60 73 chrX 26511869 26512314 -150461826 - L1MC4a LINE L1 -1761 6047 5609 2166 92 3 3 chrX 26512314 26512609 -150461531 - AluSg SINE Alu -15 295 1 472 311 60 73 chrX 26512609 26512709 -150461431 - L1MC4a LINE L1 -2199 5609 5509 698 80 0 0 chrX 26512754 26512842 -150461298 - AluSg SINE Alu -221 89 2 451 231 8 30 chrX 26512895 26513029 -150461111 - L1ME3 LINE L1 0 6162 6032 1976 114 0 0 chrX 26513086 26513366 -150460774 - AluSx SINE Alu -32 280 1 797 327 62 36 chrX 26513366 26514112 -150460028 - L1MC4a LINE L1 -881 6927 6163 2273 79 0 10 chrX 26514127 26514418 -150459722 - AluSx SINE Alu -24 288 1 1628 171 103 109 chrX 26514448 26514983 -150459157 - MLT1F1 LTR MaLR 0 595 18 564 303 65 68 chrX 26515047 26515648 -150458492 - L1MC4a LINE L1 -313 5808 5455 1850 114 0 4 chrX 26516055 26516301 -150457839 - AluSg SINE Alu -65 245 1 1809 139 10 42 chrX 26516302 26516635 -150457505 - AluSq SINE Alu 0 313 1 31 0 0 0 chrX 26516851 26516882 -150457258 + AT_rich Low_complexity Low_complexity 1 31 0 2374 71 3 10 chrX 26516882 26517178 -150456962 - AluSp SINE Alu -19 294 1 2060 97 0 72 chrX 26517399 26517720 -150456420 + AluSg1 SINE Alu 1 298 -11 975 120 7 7 chrX 26517725 26517875 -150456265 - FRAM SINE Alu -5 171 22 2157 105 14 0 chrX 26517922 26518208 -150455932 + AluSg SINE Alu 2 291 -19 300 279 100 38 chrX 26518218 26518507 -150455633 + L1MC/D LINE L1 5533 5840 -281 310 221 74 0 chrX 26518619 26518733 -150455407 + MLT1J LTR MaLR 104 288 -327 1238 247 98 15 chrX 26518919 26519255 -150454885 + LTR16A LTR ERVL 87 450 0 2107 116 61 0 chrX 26519395 26519688 -150454452 + AluSx SINE Alu 1 311 -1 647 247 131 22 chrX 26519695 26520150 -150453990 + L1ME4a LINE L1 5010 5517 -657 2387 84 0 0 chrX 26520395 26520691 -150453449 - AluSp SINE Alu -17 296 1 230 307 34 11 chrX 26520728 26520816 -150453324 + L1ME4a LINE L1 5938 6027 -94 32 75 0 0 chrX 26520858 26520925 -150453215 + AT_rich Low_complexity Low_complexity 1 67 0 743 181 0 0 chrX 26520925 26521041 -150453099 - FLAM_C SINE Alu -25 118 3 2238 86 7 0 chrX 26521069 26521381 -150452759 - AluSp SINE Alu 0 314 1 215 227 0 0 chrX 26521494 26521538 -150452602 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 3572 214 66 26 chrX 26521651 26522001 -150452139 - L1ME2 LINE L1 -16 6217 5882 1944 198 116 34 chrX 26522001 26522323 -150451817 + MER34 LTR ERV1 1 380 -162 2224 102 0 38 chrX 26522323 26522636 -150451504 - AluSq SINE Alu -12 301 1 1944 198 116 34 chrX 26522636 26522814 -150451326 + MER34 LTR ERV1 380 542 0 3572 214 66 26 chrX 26522814 26522941 -150451199 - L1ME2 LINE L1 -351 5882 5761 2280 104 0 31 chrX 26522941 26523259 -150450881 - AluSg SINE Alu 0 310 3 3572 214 66 26 chrX 26523259 26523718 -150450422 - L1ME2 LINE L1 -472 5761 5322 198 0 0 0 chrX 26523718 26523740 -150450400 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1967 131 3 3 chrX 26523743 26524025 -150450115 - AluSx SINE Alu -30 282 1 754 199 0 0 chrX 26524029 26524160 -150449980 - FLAM_C SINE Alu -2 131 1 3572 214 66 26 chrX 26524160 26524660 -150449480 - L1ME2 LINE L1 -914 5319 4709 2069 98 0 59 chrX 26524670 26524976 -150449164 + AluSg SINE Alu 1 288 -22 2213 117 0 3 chrX 26525099 26525406 -150448734 - AluSq SINE Alu -7 306 1 2366 34 41 31 chrX 26525435 26525729 -150448411 - AluY SINE Alu -14 297 1 10081 177 84 44 chrX 26525866 26525949 -150448191 + L1MDa LINE L1 16 94 -6446 2136 133 0 0 chrX 26525949 26526243 -150447897 - AluSx SINE Alu -15 297 4 10081 177 84 44 chrX 26526243 26528509 -150445631 + L1MDa LINE L1 94 2459 -4081 2126 109 0 26 chrX 26529287 26529599 -150444541 - AluSx SINE Alu -8 304 1 884 243 183 44 chrX 26529773 26529971 -150444169 - L1ME2 LINE L1 -1559 4656 4487 2640 30 0 3 chrX 26529971 26530266 -150443874 + AluY SINE Alu 1 294 -17 884 243 183 44 chrX 26530266 26530754 -150443386 - L1ME2 LINE L1 -1728 4487 3874 2242 213 25 45 chrX 26531092 26531341 -150442799 - L1ME2 LINE L1 -2824 3391 3138 761 159 0 16 chrX 26531341 26531467 -150442673 - FLAM_C SINE Alu -9 124 1 2242 213 25 45 chrX 26531467 26531515 -150442625 - L1ME2 LINE L1 -3077 3138 3091 966 182 0 29 chrX 26531515 26531685 -150442455 - FRAM SINE Alu -1 165 1 2242 213 25 45 chrX 26531685 26532076 -150442064 - L1ME2 LINE L1 -3124 3091 2716 2118 174 10 12 chrX 26532080 26532494 -150441646 - L1MA4 LINE L1 -3 6297 5885 2087 88 0 4 chrX 26532560 26532833 -150441307 - L1MA4 LINE L1 -426 5878 5607 1984 145 3 0 chrX 26532834 26533131 -150441009 - AluSq SINE Alu -15 298 1 2820 155 27 16 chrX 26533133 26533648 -150440492 - L1MA4 LINE L1 -781 5365 4845 802 119 24 16 chrX 26533648 26533774 -150440366 + FLAM_C SINE Alu 1 127 -16 27 0 0 0 chrX 26533774 26533801 -150440339 + AT_rich Low_complexity Low_complexity 1 27 0 740 136 0 0 chrX 26533808 26533926 -150440214 - L1MA4 LINE L1 -1287 4859 4742 793 225 7 0 chrX 26533928 26534110 -150440030 - FRAM SINE Alu 0 185 3 2877 233 56 74 chrX 26534121 26534549 -150439591 - L1ME2 LINE L1 -4305 2091 1657 2038 117 53 0 chrX 26534549 26534832 -150439308 - AluSg SINE Alu -12 298 1 2877 233 56 74 chrX 26534832 26535034 -150439106 - L1ME2 LINE L1 -4739 1657 1453 2177 118 0 3 chrX 26535034 26535330 -150438810 + AluSq SINE Alu 1 295 -18 2877 233 56 74 chrX 26535330 26535342 -150438798 - L1ME2 LINE L1 -4943 1453 1442 2168 130 0 0 chrX 26535342 26535649 -150438491 + AluSx SINE Alu 1 307 -5 2877 233 56 74 chrX 26535649 26535911 -150438229 - L1ME2 LINE L1 -4954 1442 1177 2292 107 3 3 chrX 26535911 26536219 -150437921 - AluSc SINE Alu -1 308 1 2877 233 56 74 chrX 26536219 26536377 -150437763 - L1ME2 LINE L1 -5219 1177 1018 2066 136 10 0 chrX 26536377 26536679 -150437461 - AluSx SINE Alu -7 305 1 2877 233 56 74 chrX 26536679 26536770 -150437370 - L1ME2 LINE L1 -5378 1018 956 2129 122 0 0 chrX 26536770 26537069 -150437071 - AluSx SINE Alu 0 303 5 2877 233 56 74 chrX 26537069 26537185 -150436955 - L1ME2 LINE L1 -5440 956 839 2250 105 0 0 chrX 26537193 26537499 -150436641 - AluSx SINE Alu 0 306 1 1440 159 4 4 chrX 26537522 26537755 -150436385 - AluJo SINE Alu -11 301 69 855 295 9 24 chrX 26537757 26538089 -150436051 - L1ME2 LINE L1 -5571 825 499 2246 108 0 13 chrX 26538135 26538271 -150435869 + AluSx SINE Alu 1 137 -175 2303 109 3 0 chrX 26538271 26538573 -150435567 + AluSp SINE Alu 1 303 -10 2246 108 0 13 chrX 26538573 26538741 -150435399 + AluSx SINE Alu 137 301 -11 23 33 0 0 chrX 26539362 26539392 -150434748 + AT_rich Low_complexity Low_complexity 1 30 0 3123 54 10 0 chrX 26539513 26539904 -150434236 - L1PA7 LINE L1 -2 6152 5758 2192 126 0 0 chrX 26539907 26540201 -150433939 - AluSg SINE Alu -16 294 1 1759 176 0 16 chrX 26540201 26540513 -150433627 - AluJo SINE Alu -4 308 2 3754 82 53 121 chrX 26541134 26541814 -150432326 + MER51A LTR ERV1 1 634 0 456 228 20 10 chrX 26541871 26541972 -150432168 + MIR SINE MIR 33 134 -128 801 168 58 0 chrX 26541986 26542141 -150431999 + MER5A DNA MER1_type 26 189 0 2185 87 7 30 chrX 26542271 26542571 -150431569 + AluSq SINE Alu 1 293 -20 967 59 8 0 chrX 26542583 26542702 -150431438 + AluSq/x SINE Alu 1 120 -193 1397 171 0 17 chrX 26542870 26543109 -150431031 - AluJb SINE Alu -1 311 77 1970 134 3 36 chrX 26543923 26544228 -150429912 - AluSx SINE Alu -15 297 3 231 215 0 31 chrX 26544340 26544405 -150429735 - L1MC4 LINE L1 -1340 6702 6640 2443 97 0 0 chrX 26544407 26544717 -150429423 - AluSg SINE Alu 0 310 1 908 252 125 9 chrX 26544741 26545062 -150429078 - L1MC4 LINE L1 -1851 5957 5600 1263 121 0 0 chrX 26545064 26545230 -150428910 + AluSx SINE Alu 1 166 -146 1571 123 4 4 chrX 26545230 26545457 -150428683 + AluSg/x SINE Alu 70 296 -14 408 207 42 28 chrX 26545469 26545592 -150428548 - MLT1H LTR MaLR -374 181 69 294 289 44 0 chrX 26545606 26545696 -150428444 - L1MC4 LINE L1 -2192 5616 5523 21 82 0 0 chrX 26545864 26545913 -150428227 + AT_rich Low_complexity Low_complexity 1 49 0 1983 78 0 0 chrX 26546075 26546320 -150427820 - AluY SINE Alu -21 290 46 2068 91 4 0 chrX 26546320 26546584 -150427556 - AluSx SINE Alu -46 266 1 2302 91 3 7 chrX 26546970 26547267 -150426873 - AluSp SINE Alu -17 296 1 180 0 0 0 chrX 26547953 26547973 -150426167 + (TGG)n Simple_repeat Simple_repeat 2 21 0 377 256 22 0 chrX 26547993 26548083 -150426057 - MER5A DNA MER1_type -85 104 13 729 212 98 5 chrX 26548291 26548475 -150425665 + L1MC4a LINE L1 5255 5455 -2353 2147 165 42 12 chrX 26548481 26548912 -150425228 + LTR56 LTR ERV1 2 445 0 643 274 189 44 chrX 26548959 26549601 -150424539 + L1MC4a LINE L1 5614 6348 -1460 1974 127 7 16 chrX 26549610 26549918 -150424222 + AluJo SINE Alu 1 305 -7 235 152 0 0 chrX 26549918 26549951 -150424189 - LTR41 LTR ERVL -323 450 418 1009 195 80 73 chrX 26549973 26550122 -150424018 - LTR41 LTR ERVL -472 301 148 2177 132 3 0 chrX 26550122 26550426 -150423714 - AluSx SINE Alu -7 305 1 1009 195 80 73 chrX 26550426 26550563 -150423577 - LTR41 LTR ERVL -625 148 13 1295 197 10 65 chrX 26550571 26550881 -150423259 + L1MC5 LINE L1 6680 6972 -989 479 167 12 0 chrX 26550884 26550968 -150423172 - FLAM_A SINE Alu -33 109 25 194 0 39 0 chrX 26551006 26551032 -150423108 + (CAA)n Simple_repeat Simple_repeat 2 28 0 638 148 7 67 chrX 26551032 26551167 -150422973 + L1MC5 LINE L1 7022 7148 -813 1812 187 78 3 chrX 26551243 26551601 -150422539 + Charlie1a DNA MER1_type 1 385 -1070 675 177 0 32 chrX 26551602 26551726 -150422414 + FLAM_A SINE Alu 1 120 -22 4163 148 48 10 chrX 26551736 26552539 -150421601 + Charlie1a DNA MER1_type 377 1296 -159 878 148 44 0 chrX 26552543 26552678 -150421462 - FRAM SINE Alu -30 146 6 284 86 0 0 chrX 26552695 26552730 -150421410 - U2 snRNA snRNA -153 35 1 2043 99 60 0 chrX 26552740 26553024 -150421116 - AluSc SINE Alu -7 302 2 1909 149 94 18 chrX 26553028 26553498 -150420642 + Charlie1 DNA MER1_type 2161 2731 -30 2443 93 0 0 chrX 26553505 26553807 -150420333 - AluSx SINE Alu -8 304 3 960 182 19 0 chrX 26553829 26553988 -150420152 - AluJo SINE Alu -30 282 121 714 179 20 13 chrX 26553988 26554139 -150420001 + Charlie1 DNA MER1_type 2605 2756 -5 1223 207 22 59 chrX 26554140 26554497 -150419643 + L1MC5 LINE L1 7153 7496 -465 2390 43 0 14 chrX 26554588 26554765 -150419375 - AluSx SINE Alu 0 310 137 2090 118 0 40 chrX 26554765 26555086 -150419054 - AluSg SINE Alu -2 308 1 2390 43 0 14 chrX 26555086 26555214 -150418926 - AluSx SINE Alu -173 137 9 323 279 56 9 chrX 26555406 26555544 -150418596 + MIR SINE MIR 3 144 -64 1745 146 10 48 chrX 26556339 26556628 -150417512 - AluJo SINE Alu 0 411 136 2441 75 3 0 chrX 26556628 26556923 -150417217 - AluSp SINE Alu -17 296 1 1745 146 10 48 chrX 26556923 26557055 -150417085 - AluJo SINE Alu -275 136 1 481 304 41 0 chrX 26557132 26557303 -150416837 + MIR SINE MIR 14 191 -71 550 283 64 47 chrX 26557361 26557487 -150416653 + LTR33 LTR ERVL 2 124 -397 1579 142 0 47 chrX 26557487 26557741 -150416399 + AluJo SINE Alu 40 281 -31 550 283 64 47 chrX 26557741 26557938 -150416202 + LTR33 LTR ERVL 124 370 -151 2320 109 0 0 chrX 26558191 26558494 -150415646 + AluSx SINE Alu 1 303 -9 651 26 0 0 chrX 26558788 26558865 -150415275 + (TA)n Simple_repeat Simple_repeat 2 78 0 2329 79 0 0 chrX 26558868 26559146 -150414994 - AluSc SINE Alu -31 278 1 1266 139 74 19 chrX 26559156 26559371 -150414769 - AluJb SINE Alu -1 311 85 789 111 22 44 chrX 26559784 26559919 -150414221 - FLAM_C SINE Alu 0 143 12 1409 118 142 45 chrX 26560835 26561081 -150413059 - AluJb SINE Alu -19 293 24 1665 160 7 10 chrX 26561093 26561386 -150412754 - AluJo SINE Alu -4 308 17 1275 95 0 0 chrX 26561416 26561574 -150412566 - AluSc SINE Alu -13 296 139 2440 66 3 3 chrX 26561615 26561917 -150412223 + AluSc SINE Alu 1 302 -7 808 166 24 41 chrX 26561972 26562141 -150411999 + MLT1C LTR MaLR 19 184 -321 1107 145 12 0 chrX 26562166 26562338 -150411802 + FRAM SINE Alu 1 173 -3 835 211 188 5 chrX 26562394 26562602 -150411538 + MLT1C LTR MaLR 217 462 -5 232 255 85 57 chrX 26562802 26562908 -150411232 + MLT1K LTR MaLR 156 264 -324 1106 164 5 43 chrX 26563448 26563656 -150410484 - AluJo SINE Alu -26 286 87 481 209 16 107 chrX 26764063 26764136 -150210004 - L1ME1 LINE L1 -167 5999 6038 1176 181 14 14 chrX 26764136 26764351 -150209789 + MER58C DNA MER1_type 1 215 0 481 209 16 107 chrX 26764351 26764489 -150209651 - L1ME1 LINE L1 -127 6039 5890 1108 178 108 11 chrX 26764489 26764758 -150209382 - AluSx SINE Alu -6 296 2 2095 97 3 62 chrX 26764762 26764930 -150209210 - AluSx SINE Alu -11 301 159 2121 81 3 50 chrX 26764930 26765227 -150208913 - AluSg SINE Alu -13 297 15 2095 97 3 62 chrX 26765227 26765378 -150208762 - AluSx SINE Alu -153 159 1 1647 186 26 26 chrX 26765378 26765723 -150208417 - L1MD2 LINE L1 -399 5960 5616 1639 84 33 0 chrX 26767055 26767270 -150206870 + AluSg/x SINE Alu 85 306 -6 2212 114 3 0 chrX 26768505 26768804 -150205336 + AluSx SINE Alu 1 300 -12 494 248 136 10 chrX 26768812 26769018 -150205122 + LTR16C LTR ERVL 1 232 -259 248 0 31 0 chrX 26769018 26769050 -150205090 + (TG)n Simple_repeat Simple_repeat 1 33 0 2304 95 3 0 chrX 26769181 26769491 -150204649 - AluSx SINE Alu 0 311 1 2494 138 15 15 chrX 26769500 26769883 -150204257 + MER57A LTR ERV1 1 386 -17 2113 143 3 3 chrX 26769883 26770190 -150203950 - AluSx SINE Alu -5 307 1 2494 138 15 15 chrX 26770190 26770205 -150203935 + MER57A LTR ERV1 385 399 -4 2888 258 44 60 chrX 26770279 26771221 -150202919 + L1MEc LINE L1 39 995 -5401 2083 144 0 0 chrX 26771221 26771531 -150202609 - AluSx SINE Alu 0 312 1 2888 258 44 60 chrX 26771531 26771550 -150202590 + L1MEc LINE L1 995 1013 -5383 1893 122 0 3 chrX 26771550 26771836 -150202304 + L1MB3 LINE L1 5892 6176 -7 2888 258 44 60 chrX 26771836 26772342 -150201798 + L1MEc LINE L1 1013 1296 -5100 1800 146 71 0 chrX 26772342 26772609 -150201531 + AluSx SINE Alu 1 286 -26 2888 258 44 60 chrX 26772609 26773109 -150201031 + L1MEc LINE L1 1296 1803 -4593 916 73 0 0 chrX 26773123 26773233 -150200907 + AluSq/x SINE Alu 1 110 -202 2485 69 10 0 chrX 26773502 26773805 -150200335 - AluY SINE Alu -5 306 1 1038 101 0 7 chrX 26774479 26774618 -150199522 + AluSq/x SINE Alu 1 138 -175 1031 165 0 0 chrX 26774812 26774976 -150199164 + FAM SINE Alu 2 165 -10 635 167 28 94 chrX 26776030 26776210 -150197930 - L2 LINE L2 -5 3308 3141 2461 166 42 2 chrX 26776227 26776637 -150197503 - MSTB LTR MaLR 0 426 1 363 212 10 40 chrX 26776696 26776795 -150197345 + L2 LINE L2 1609 1704 -1610 2981 62 5 3 chrX 26776799 26777171 -150196969 + THE1C LTR MaLR 3 375 0 758 238 151 44 chrX 26777186 26777776 -150196364 + L2 LINE L2 2662 3309 -4 1880 84 11 0 chrX 26777861 26778148 -150195992 - L1PA10 LINE L1 0 6168 5905 1959 128 44 3 chrX 26778148 26778445 -150195695 - AluSx SINE Alu -3 309 1 1377 179 45 62 chrX 26779228 26779519 -150194621 + AluJo SINE Alu 1 286 -26 23 0 0 0 chrX 26780032 26780055 -150194085 + AT_rich Low_complexity Low_complexity 1 23 0 2282 106 3 0 chrX 26780059 26780360 -150193780 + AluSx SINE Alu 1 302 -10 234 0 0 0 chrX 26780783 26780809 -150193331 + (TTG)n Simple_repeat Simple_repeat 2 27 0 675 130 154 16 chrX 26781636 26781759 -150192381 + THE1C LTR MaLR 3 142 -233 703 220 17 106 chrX 26782279 26782358 -150191782 + LTR16C LTR ERVL 277 361 -130 2086 33 4 8 chrX 26782358 26782599 -150191541 - AluY SINE Alu -19 292 53 703 220 17 106 chrX 26782599 26782755 -150191385 + LTR16C LTR ERVL 361 491 0 337 88 12 50 chrX 26782846 26782926 -150191214 + (TCTCC)n Simple_repeat Simple_repeat 5 81 0 1930 126 0 25 chrX 26782927 26783212 -150190928 - AluSx SINE Alu -34 278 1 288 259 25 0 chrX 26783355 26783436 -150190704 + MER103 DNA DNA 32 114 -52 219 308 6 116 chrX 26783448 26783548 -150190592 - L3 LINE CR1 -219 1358 1283 2220 113 6 3 chrX 26783548 26783859 -150190281 + AluSx SINE Alu 1 312 0 219 308 6 116 chrX 26783859 26783930 -150190210 - L3 LINE CR1 -294 1283 1206 384 304 15 22 chrX 26783933 26784068 -150190072 - L2 LINE L2 -2 3311 3178 7714 180 104 13 chrX 26784079 26786042 -150188098 + L1MDa LINE L1 18 2328 -4212 5051 80 22 146 chrX 26786042 26786569 -150187571 - Tigger3(Golem) DNA MER2_type -1 3028 2437 413 117 0 0 chrX 26786569 26786629 -150187511 - AluS SINE Alu -20 290 231 1025 131 0 0 chrX 26786630 26786767 -150187373 - AluSq/x SINE Alu -173 139 3 5051 80 22 146 chrX 26786767 26787437 -150186703 - Tigger3(Golem) DNA MER2_type -591 2438 1 4115 201 24 15 chrX 26787457 26788745 -150185395 + L1MDa LINE L1 2326 3620 -2920 783 188 231 35 chrX 26788748 26788977 -150185163 + L1MD2 LINE L1 6084 6357 -2 1073 288 91 32 chrX 26789075 26789496 -150184644 - L3 LINE CR1 -393 1184 724 2475 142 36 14 chrX 26789496 26789913 -150184227 - MSTB LTR MaLR 0 426 1 1073 288 91 32 chrX 26789913 26790016 -150184124 - L3 LINE CR1 -853 724 629 266 327 73 0 chrX 26790018 26790128 -150184012 + LTR16A LTR ERVL 10 127 -323 2490 146 2 38 chrX 26790137 26790588 -150183552 - L1MB1 LINE L1 -5 6163 5729 260 241 0 24 chrX 26790883 26790966 -150183174 - MLT1B LTR MaLR -120 270 190 300 133 0 0 chrX 26790971 26791031 -150183109 + (GA)n Simple_repeat Simple_repeat 2 61 0 861 129 66 40 chrX 26791031 26791219 -150182921 - MLT1B LTR MaLR -196 178 1 2043 105 56 7 chrX 26791706 26791991 -150182149 + AluSg SINE Alu 1 299 -11 3479 123 2 38 chrX 26792169 26792513 -150181627 - LTR26B LTR ERV1 0 531 212 2340 77 0 7 chrX 26792513 26792823 -150181317 - AluSx SINE Alu 0 308 1 3479 123 2 38 chrX 26792823 26793028 -150181112 - LTR26B LTR ERV1 -319 212 1 823 110 68 0 chrX 26793128 26793274 -150180866 - Charlie5 DNA MER1_type 0 2619 2464 270 215 15 15 chrX 26793595 26793660 -150180480 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 433 249 68 68 chrX 26793668 26793905 -150180235 + MIR SINE MIR 26 262 0 277 263 118 0 chrX 26794621 26794697 -150179443 + L2 LINE L2 3187 3271 -1 1019 242 8 28 chrX 26794982 26795230 -150178910 + MLT1K LTR MaLR 344 586 -2 2314 104 3 0 chrX 26795241 26795540 -150178600 + AluSx SINE Alu 1 300 -12 363 78 0 0 chrX 26795661 26795712 -150178428 + (TATAG)n Simple_repeat Simple_repeat 2 52 0 944 153 11 28 chrX 26795967 26796143 -150177997 + MER5B DNA MER1_type 1 173 -5 596 205 18 0 chrX 26796394 26796506 -150177634 + MER81 DNA DNA 1 114 0 1192 195 217 7 chrX 26796710 26797120 -150177020 - LTR54B LTR ERV1 -2 496 1 2211 158 6 6 chrX 26797170 26797524 -150176616 + MLT1A1 LTR MaLR 10 363 -2 2213 93 21 0 chrX 26797540 26797830 -150176310 - AluSx SINE Alu -16 296 1 253 279 231 7 chrX 26797884 26798031 -150176109 - MER5A DNA MER1_type -9 180 1 606 293 76 26 chrX 26798150 26798378 -150175762 + L1M4 LINE L1 3545 3802 -2344 2021 86 39 25 chrX 26798378 26798682 -150175458 + AluSx SINE Alu 1 308 0 606 293 76 26 chrX 26798682 26798834 -150175306 + L1M4 LINE L1 3802 3945 -2201 274 346 0 0 chrX 26798853 26798960 -150175180 + MERVL LTR ERVL 3382 3488 -1997 5663 89 34 12 chrX 26798981 26799450 -150174690 - L1MA2 LINE L1 -1 7722 7226 2253 75 30 24 chrX 26799450 26799745 -150174395 - AluSp SINE Alu -16 297 1 5663 89 34 12 chrX 26799745 26800106 -150174034 - L1MA2 LINE L1 -497 7226 6874 2809 118 9 2 chrX 26800106 26800547 -150173593 - L1MA2 LINE L1 -1213 6352 5909 915 121 40 69 chrX 26800543 26800716 -150173424 - L1MA2 LINE L1 -7376 189 22 * 316 345 0 9 chrX 26800726 26800839 -150173301 + MERVL LTR ERVL 3481 3592 -2062 2340 135 15 81 chrX 26800905 26801363 -150172777 - MSTC LTR MaLR 0 428 1 4204 223 69 64 chrX 26801363 26802607 -150171533 - MSTC-int LTR MaLR 0 1651 402 1528 105 93 34 chrX 26802608 26803333 -150170807 + SVA Other Other 483 824 -562 2092 92 4 0 chrX 26803453 26803748 -150170392 + AluSx SINE Alu 22 317 0 814 168 0 0 chrX 26803756 26803875 -150170265 + FLAM_C SINE Alu 1 119 -24 882 95 0 0 chrX 26803875 26804001 -150170139 + (TAGA)n Simple_repeat Simple_repeat 1 126 0 693 259 40 43 chrX 26804025 26804303 -150169837 + L1ME4a LINE L1 5621 5897 -224 786 198 60 48 chrX 26804308 26804556 -150169584 + L1MC5 LINE L1 7133 7383 -578 1747 65 23 0 chrX 26804577 26804794 -150169346 + MER30 DNA MER1_type 9 230 0 1784 179 30 95 chrX 26804800 26804888 -150169252 + L1MC5 LINE L1 7390 7482 -479 2446 31 0 31 chrX 26804888 26805211 -150168929 + AluY SINE Alu 1 314 0 1784 179 30 95 chrX 26805211 26805692 -150168448 + L1MC5 LINE L1 7482 7923 -38 1007 199 95 34 chrX 26805719 26806164 -150167976 + LTR33 LTR ERVL 4 520 -1 219 36 0 0 chrX 26806715 26806743 -150167397 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1708 173 3 21 chrX 26806976 26807259 -150166881 - AluJo SINE Alu -34 278 1 887 225 68 114 chrX 26807281 26807694 -150166446 - L1MC4a LINE L1 -1841 5967 5574 584 168 65 28 chrX 26807694 26807780 -150166360 - MLT1E1 LTR MaLR -543 111 19 2427 148 18 48 chrX 26807780 26807835 -150166305 + MSTB LTR MaLR 1 56 -370 2260 116 0 7 chrX 26807835 26808137 -150166003 + AluSx SINE Alu 1 300 -12 2427 148 18 48 chrX 26808137 26808520 -150165620 + MSTB LTR MaLR 56 426 0 584 168 65 28 chrX 26808520 26808540 -150165600 - MLT1E1 LTR MaLR -635 19 1 1742 134 101 0 chrX 26808732 26809000 -150165140 - AluSx SINE Alu -17 295 1 2280 106 0 0 chrX 26810128 26810420 -150163720 - AluSx SINE Alu -20 292 1 781 151 0 0 chrX 26810967 26811086 -150163054 - AluJb SINE Alu -6 306 188 2062 104 0 31 chrX 26811143 26811431 -150162709 + AluSq SINE Alu 17 295 -18 1809 122 54 30 chrX 26811445 26811780 -150162360 - L1MD1 LINE L1 -6 6630 6288 1506 172 77 30 chrX 26811795 26812092 -150162048 - AluJo SINE Alu -1 311 1 3179 215 27 26 chrX 26812095 26812743 -150161397 - L1MD1 LINE L1 -840 5700 5066 2329 87 10 3 chrX 26812743 26813042 -150161098 + AluSq SINE Alu 1 301 -12 3179 215 27 26 chrX 26813042 26813294 -150160846 - L1MD1 LINE L1 -1474 5066 4816 * 5202 128 6 32 chrX 26813290 26813334 -150160806 - L1MB3 LINE L1 -3 6180 6136 2075 135 3 7 chrX 26813334 26813630 -150160510 - AluJb SINE Alu -17 295 1 5202 128 6 32 chrX 26813630 26814285 -150159855 - L1MB3 LINE L1 -47 6136 5466 219 69 0 0 chrX 26814285 26814314 -150159826 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1827 150 32 0 chrX 26814317 26814597 -150159543 - AluSx SINE Alu -23 289 1 5202 128 6 32 chrX 26814597 26814759 -150159381 - L1MB3 LINE L1 -719 5464 5337 4882 220 22 36 chrX 26814764 26814899 -150159241 - L1MD1 LINE L1 -1754 4786 4651 252 0 0 0 chrX 26814899 26814927 -150159213 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4882 220 22 36 chrX 26814927 26815132 -150159008 - L1MD1 LINE L1 -1889 4651 4445 2450 86 0 0 chrX 26815132 26815434 -150158706 - AluSg SINE Alu -8 302 1 4882 220 22 36 chrX 26815434 26816430 -150157710 - L1MD1 LINE L1 -2095 4445 3467 5024 180 80 18 chrX 26816473 26817587 -150156553 - L1MD1 LINE L1 -3462 3078 2034 2448 100 0 0 chrX 26817587 26817897 -150156243 + AluSx SINE Alu 1 310 -2 5024 180 80 18 chrX 26817897 26818730 -150155410 - L1MD1 LINE L1 -4506 2034 810 2115 151 16 28 chrX 26818961 26819398 -150154742 + L1PA3 LINE L1 5724 6155 0 541 219 0 8 chrX 26819412 26819535 -150154605 - L1M4 LINE L1 -1150 4996 4875 2407 124 20 18 chrX 26819555 26819949 -150154191 + L1MB8 LINE L1 5783 6177 -1 626 149 0 0 chrX 26819973 26820060 -150154080 - AluJb SINE Alu -32 280 194 2360 105 0 0 chrX 26820216 26820522 -150153618 + AluSx SINE Alu 1 306 -6 352 215 38 0 chrX 26820610 26820689 -150153451 + L1ME LINE L1 5524 5605 -516 2384 61 0 29 chrX 26820933 26821243 -150152897 + AluY SINE Alu 1 301 -10 1171 248 12 93 chrX 26821346 26821766 -150152374 + MLT1J LTR MaLR 118 503 -8 212 300 14 29 chrX 26821878 26821948 -150152192 + L2 LINE L2 3186 3254 -18 1975 149 140 8 chrX 26822199 26822555 -150151585 + MER57A LTR ERV1 1 403 0 637 126 50 17 chrX 26822555 26822674 -150151466 + L1MA9 LINE L1 6151 6273 -39 3488 212 71 78 chrX 26823555 26824000 -150150140 - L1MC4 LINE L1 0 8042 7595 2363 77 47 0 chrX 26824000 26824298 -150149842 - AluSx SINE Alu 0 312 1 3488 212 71 78 chrX 26824298 26824997 -150149143 - L1MC4 LINE L1 -447 7595 6907 1091 178 76 10 chrX 26824997 26825194 -150148946 - MER6B DNA MER2_type 0 210 1 3488 212 71 78 chrX 26825194 26825362 -150148778 - L1MC4 LINE L1 -1135 6907 6739 2280 78 3 0 chrX 26825370 26825706 -150148434 - AluSp SINE Alu 0 337 1 2273 112 0 0 chrX 26826002 26826296 -150147844 - AluSx SINE Alu -18 294 1 29 47 0 0 chrX 26826761 26826804 -150147336 + AT_rich Low_complexity Low_complexity 1 43 0 1487 148 34 15 chrX 26827056 26827320 -150146820 - L1MC1 LINE L1 0 6727 6459 1260 96 5 16 chrX 26827322 26827509 -150146631 + THE1C-int LTR MaLR 1390 1574 -6 1905 165 40 40 chrX 26827514 26827889 -150146251 + THE1C LTR MaLR 1 375 0 13464 126 23 1 chrX 26827889 26829807 -150144333 - L1M1 LINE L1 -5583 1982 22 273 268 105 59 chrX 26830047 26830200 -150143940 + MLT1I LTR MaLR 75 234 -175 1851 102 70 0 chrX 26830393 26830649 -150143491 + L1M1 LINE L1 920 1193 -6372 271 204 56 21 chrX 26830658 26830710 -150143430 + (TA)n Simple_repeat Simple_repeat 2 51 -97 2620 67 103 3 chrX 26830710 26831041 -150143099 + THE1B LTR MaLR 1 364 0 271 204 56 21 chrX 26831041 26831130 -150143010 + (TA)n Simple_repeat Simple_repeat 51 148 0 2321 104 0 22 chrX 26831634 26831951 -150142189 - AluSx SINE Alu -2 310 1 1268 272 12 26 chrX 26832096 26832181 -150141959 + LTR16C LTR ERVL 151 236 -255 4867 140 97 13 chrX 26832181 26832976 -150141164 - MER6 DNA MER2_type -3 862 1 1268 272 12 26 chrX 26832976 26833236 -150140904 + LTR16C LTR ERVL 236 491 0 280 246 62 0 chrX 26833569 26833634 -150140506 - L2 LINE L2 0 3313 3245 956 264 61 0 chrX 26834112 26834343 -150139797 + HERVL LTR ERVL 4036 4280 -1374 1014 295 73 20 chrX 26834343 26834933 -150139207 - L1MC1 LINE L1 -747 5793 5230 2520 74 0 3 chrX 26834933 26835243 -150138897 + AluSq SINE Alu 1 309 -4 1014 295 73 20 chrX 26835243 26835747 -150138393 - L1MC1 LINE L1 -1310 5230 4754 1937 118 22 12 chrX 26835759 26836080 -150138060 + L1 LINE L1 4519 4842 -1304 1511 230 27 18 chrX 26836244 26836575 -150137565 - L1MC1 LINE L1 -5981 559 226 704 179 26 0 chrX 26836594 26836711 -150137429 - L1MC1 LINE L1 -6406 134 15 917 224 20 43 chrX 26836714 26836969 -150137171 - L1ME3A LINE L1 -1 6169 5921 23 92 0 0 chrX 26837045 26837110 -150137030 + AT_rich Low_complexity Low_complexity 1 65 0 483 248 64 14 chrX 26837147 26837288 -150136852 - MIR SINE MIR -71 191 44 931 123 34 7 chrX 26837931 26838077 -150136063 - AluJo SINE Alu -162 150 1 933 231 89 6 chrX 26838416 26838837 -150135303 - LTR33 LTR ERVL 0 521 13 188 83 0 28 chrX 26838913 26838949 -150135191 + (TGGGGG)n Simple_repeat Simple_repeat 5 39 0 2280 114 7 0 chrX 26839132 26839485 -150134655 - AluSx SINE Alu 0 355 1 836 160 0 0 chrX 26839958 26840083 -150134057 + FLAM_C SINE Alu 1 125 -18 2138 129 0 7 chrX 26840208 26840511 -150133629 - AluSq SINE Alu -12 301 1 2302 101 0 3 chrX 26841002 26841299 -150132841 + AluSx SINE Alu 1 296 -16 425 264 185 34 chrX 26841733 26842203 -150131937 + L1MB2 LINE L1 4729 5269 -877 335 221 39 0 chrX 26842229 26842306 -150131834 + MER116 DNA Mariner 1 80 0 4688 117 33 9 chrX 26842514 26843204 -150130936 + L1MB2 LINE L1 5463 6169 -2 549 298 120 35 chrX 26843233 26843561 -150130579 + L1MC4a LINE L1 5438 5807 -2001 2700 84 20 3 chrX 26843561 26843908 -150130232 - L1PA10 LINE L1 -4 6164 5812 549 298 120 35 chrX 26843908 26843979 -150130161 + L1MC4a LINE L1 5807 5871 -1937 1726 156 143 3 chrX 26844100 26844421 -150129719 + MLT2D LTR ERVL 1 366 -48 1071 233 0 0 chrX 26844421 26844636 -150129504 + L1MC/D LINE L1 4042 4256 -1890 2432 84 0 3 chrX 26845743 26846051 -150128089 - AluSg SINE Alu -3 307 1 4301 224 47 7 chrX 26847096 26848163 -150125977 + L1MC/D LINE L1 4284 5393 -753 396 147 93 0 chrX 26848217 26848292 -150125848 + L1MC/D LINE L1 5387 5468 -865 6073 128 19 5 chrX 26848292 26849451 -150124689 + L1PA16 LINE L1 4991 6166 0 2113 115 11 80 chrX 26849454 26849602 -150124538 + Tigger1 DNA MER2_type 2078 2235 -183 843 160 15 0 chrX 26849602 26849733 -150124407 - FLAM_C SINE Alu 0 133 1 2113 115 11 80 chrX 26849733 26849948 -150124192 + Tigger1 DNA MER2_type 2235 2416 -2 194 321 107 9 chrX 26849998 26850110 -150124030 - MIR3 SINE MIR -12 196 74 2252 129 0 0 chrX 26850382 26850693 -150123447 + AluSx SINE Alu 1 311 -1 1899 139 7 4 chrX 26850818 26851130 -150123010 - AluJb SINE Alu 0 313 1 2254 120 7 0 chrX 26851646 26851954 -150122186 - AluSx SINE Alu -2 310 1 3585 65 23 0 chrX 26851990 26852424 -150121716 + MLT2A1 LTR ERVL 1 444 0 297 294 108 0 chrX 26852556 26852658 -150121482 - L2 LINE L2 -2 3270 3158 527 310 13 6 chrX 26853134 26853292 -150120848 - MER5B DNA MER1_type -16 162 4 418 278 67 43 chrX 26853885 26854059 -150120081 - MIR SINE MIR -63 145 4 1332 278 19 45 chrX 26854170 26854409 -150119731 + LTR16B LTR ERVL 9 233 -231 2179 88 7 44 chrX 26854409 26854735 -150119405 - AluSx SINE Alu 0 315 1 1332 278 19 45 chrX 26854735 26854961 -150119179 + LTR16B LTR ERVL 233 463 -1 1025 174 24 19 chrX 26855707 26855919 -150118221 - AluJo SINE Alu -2 310 98 193 272 130 22 chrX 26855946 26856038 -150118102 - MIR SINE MIR 0 262 161 2367 100 0 3 chrX 26856038 26856347 -150117793 + AluSg SINE Alu 1 308 -2 1434 226 140 21 chrX 26856366 26856732 -150117408 + LTR16C LTR ERVL 1 429 -62 2566 108 34 3 chrX 26856732 26857085 -150117055 + THE1B LTR MaLR 1 364 0 1434 226 140 21 chrX 26857085 26857155 -150116985 + LTR16C LTR ERVL 429 489 -2 2257 109 3 0 chrX 26858506 26858809 -150115331 - AluSx SINE Alu -8 304 1 711 211 126 0 chrX 26858912 26859102 -150115038 - MIR SINE MIR 0 262 49 2295 91 10 3 chrX 26859300 26859608 -150114532 - AluSx SINE Alu 0 312 3 1053 271 121 15 chrX 26859853 26860259 -150113881 - MLT1L LTR MaLR -14 601 153 279 304 189 40 chrX 26860848 26860996 -150113144 - MIR SINE MIR -44 218 49 353 295 49 47 chrX 26861094 26861278 -150112862 + MIR SINE MIR 2 187 -61 1646 170 52 14 chrX 26861792 26861912 -150112228 + AluJo SINE Alu 2 116 -196 2358 95 7 0 chrX 26861912 26862217 -150111923 + AluSg SINE Alu 1 307 -3 1646 170 52 14 chrX 26862217 26862385 -150111755 + AluJo SINE Alu 116 301 -11 2512 213 61 2 chrX 26862400 26862926 -150111214 - L1ME3A LINE L1 0 6170 5614 282 250 37 46 chrX 26863265 26863373 -150110767 + MIR SINE MIR 40 146 -62 3554 109 0 4 chrX 26864932 26865436 -150108704 + L1PA16 LINE L1 5656 6157 -9 2585 65 3 0 chrX 26865521 26865830 -150108310 + AluSp SINE Alu 1 310 -3 2052 150 0 10 chrX 26866076 26866376 -150107764 - AluJo SINE Alu -15 297 1 6768 106 23 43 chrX 26866445 26867516 -150106624 + L1MA6 LINE L1 4723 5747 -553 2145 121 0 16 chrX 26867516 26867821 -150106319 + AluSx SINE Alu 1 300 -12 6768 106 23 43 chrX 26867821 26868363 -150105777 + L1MA6 LINE L1 5747 6299 -1 235 288 12 25 chrX 26868371 26868451 -150105689 - L1ME LINE L1 -312 5858 5780 192 245 19 0 chrX 26869381 26869434 -150104706 - MIR3 SINE MIR -16 192 139 972 311 168 18 chrX 26869440 26870359 -150103781 - L2 LINE L2 -2 3270 2238 2212 150 40 67 chrX 26870360 26870806 -150103334 - Tigger2a DNA MER2_type 0 434 1 229 289 0 13 chrX 26870840 26870916 -150103224 - LTR33 LTR ERVL -4 517 443 * 305 179 18 122 chrX 26870908 26871043 -150103097 - MLT1H LTR MaLR -10 533 281 1481 304 11 4 chrX 26871089 26871669 -150102471 - HERVL LTR ERVL -1368 4286 3700 2499 136 42 45 chrX 26871669 26872096 -150102044 + MSTC LTR MaLR 1 426 -2 2308 207 11 8 chrX 26872096 26872565 -150101575 + MSTC-int LTR MaLR 2 471 -1264 26 0 0 0 chrX 26872565 26872591 -150101549 + AT_rich Low_complexity Low_complexity 1 26 0 6017 96 39 26 chrX 26872591 26873511 -150100629 - SVA Other Other 0 1386 455 1079 152 8 91 chrX 26873824 26874067 -150100073 - L1 LINE L1 -877 5269 5047 * 3459 210 59 36 chrX 26874058 26875006 -150099134 - L1 LINE L1 -1711 4435 3466 541 294 97 4 chrX 26875026 26875254 -150098886 - MIR SINE MIR -3 259 11 1929 120 60 27 chrX 26875316 26875616 -150098524 + AluSx SINE Alu 1 310 -2 665 344 57 25 chrX 26876596 26877038 -150097102 + HAL1b LINE L1 95 550 -798 1583 133 74 23 chrX 26877409 26877718 -150096422 - L1MD3 LINE L1 -10 7985 7661 1519 260 36 46 chrX 26877699 26877989 -150096151 - L1MC5 LINE L1 -30 7931 7640 * 2279 87 24 0 chrX 26877989 26878276 -150095864 - AluSg SINE Alu -16 294 1 1519 260 36 46 chrX 26878276 26878770 -150095370 - L1MC5 LINE L1 -321 7640 7244 740 239 127 23 chrX 26878768 26879036 -150095104 - L1MC4 LINE L1 -728 7233 6962 * 2522 54 0 0 chrX 26879100 26879395 -150094745 + AluY SINE Alu 1 295 -16 1016 190 58 0 chrX 26880022 26880227 -150093913 - MIR SINE MIR -19 243 27 255 31 0 0 chrX 26880262 26880294 -150093846 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2317 118 3 0 chrX 26880389 26880694 -150093446 + AluSx SINE Alu 1 306 -6 564 232 129 46 chrX 26881064 26881305 -150092835 + MIR SINE MIR 1 261 -1 2077 137 0 0 chrX 26881579 26881902 -150092238 + AluSx SINE Alu 1 323 0 515 252 0 22 chrX 26882560 26882588 -150091552 - LTR16C LTR ERVL 0 491 464 2602 109 3 8 chrX 26882588 26882954 -150091186 + THE1B LTR MaLR 1 364 0 515 252 0 22 chrX 26882954 26883060 -150091080 - LTR16C LTR ERVL -27 464 360 1079 129 169 0 chrX 26883214 26883415 -150090725 - LTR40b LTR ERVL 0 462 228 250 237 53 13 chrX 26883413 26883489 -150090651 - LTR16C LTR ERVL -260 231 153 * 3819 184 48 27 chrX 26883784 26884593 -150089547 - LTR1B LTR ERV1 0 826 1 2204 135 9 15 chrX 26884593 26884903 -150089237 - HUERS-P2 LTR ERV1 0 3088 2779 2334 99 10 0 chrX 26884903 26885205 -150088935 + AluSx SINE Alu 1 305 -7 2204 135 9 15 chrX 26885205 26885219 -150088921 - HUERS-P2 LTR ERV1 -309 2779 2766 11856 145 2 8 chrX 26885240 26886806 -150087334 - LTR1B-int LTR ERV1 -488 6603 5029 2232 67 7 18 chrX 26886806 26887090 -150087050 + AluSp SINE Alu 1 281 -32 561 30 0 0 chrX 26887090 26887157 -150086983 + (GA)n Simple_repeat Simple_repeat 2 68 0 11856 145 2 8 chrX 26887157 26887345 -150086795 - LTR1B-int LTR ERV1 -2060 5031 4859 1794 148 53 18 chrX 26887345 26887682 -150086458 + L1PB1 LINE L1 698 1046 -5817 15570 184 15 18 chrX 26887686 26889303 -150084837 + L1PB1 LINE L1 1094 2714 -4153 2517 77 0 0 chrX 26889303 26889614 -150084526 + AluY SINE Alu 1 311 0 15570 184 15 18 chrX 26889614 26891133 -150083007 + L1PB1 LINE L1 2714 4236 -2631 2187 95 10 14 chrX 26891133 26891429 -150082711 + AluSc SINE Alu 1 295 -14 15570 184 15 18 chrX 26891429 26893878 -150080262 + L1PB1 LINE L1 4236 6867 0 20919 159 21 15 chrX 26893887 26898494 -150075646 - LTR1B-int LTR ERV1 -417 2671 1 4049 177 50 19 chrX 26898494 26899295 -150074845 - LTR1B LTR ERV1 0 826 1 4275 94 25 102 chrX 26899698 26900446 -150073694 - LTR8 LTR ERV1 0 691 1 1684 150 5 125 chrX 26900794 26901187 -150072953 - MER7A DNA MER2_type -1 345 2 1989 122 3 44 chrX 26901523 26901842 -150072298 + AluSx SINE Alu 1 307 0 370 271 100 37 chrX 26901981 26902143 -150071997 - LTR33A LTR ERVL -361 162 17 1733 145 6 31 chrX 26902770 26903119 -150071021 + MER61C LTR ERV1 1 434 0 2439 69 0 0 chrX 26903394 26903684 -150070456 + AluY SINE Alu 1 290 -21 1502 231 52 28 chrX 26903707 26904245 -150069895 - L1M4 LINE L1 -1139 5007 4457 2320 162 63 103 chrX 26904568 26905305 -150068835 + Charlie2 DNA MER1_type 2032 2739 -123 254 260 250 0 chrX 26905305 26905405 -150068735 + MLT1J LTR MaLR 1 125 -386 2369 99 5 94 chrX 26905405 26905819 -150068321 - MER51B LTR ERV1 0 377 1 4709 126 119 101 chrX 26905820 26906083 -150068057 - MER51B-int LTR ERV1 0 7816 7559 2499 78 0 3 chrX 26906083 26906389 -150067751 + AluSq SINE Alu 1 305 -8 4709 126 119 101 chrX 26906389 26907166 -150066974 - MER51B-int LTR ERV1 -257 7559 6757 1982 81 186 134 chrX 26907164 26907296 -150066844 - MER51B-int LTR ERV1 -1599 5938 5814 * 234 51 0 0 chrX 26907296 26907335 -150066805 + AluY SINE Alu 270 308 0 1982 81 186 134 chrX 26907335 26907502 -150066638 - MER51B-int LTR ERV1 -1723 5814 5657 2012 142 3 0 chrX 26907502 26907790 -150066350 + AluSx SINE Alu 11 299 -13 1982 81 186 134 chrX 26907790 26907920 -150066220 - MER51B-int LTR ERV1 -1880 5657 5446 1115 88 0 7 chrX 26907918 26908065 -150066075 - MER51B-int LTR ERV1 -2661 4876 4731 * 2484 68 6 17 chrX 26908188 26908540 -150065600 - MER51B-int LTR ERV1 -5251 2565 2218 * 9307 143 31 23 chrX 26908528 26910143 -150063997 - MER51B-int LTR ERV1 -5860 1956 329 1261 94 35 0 chrX 26910131 26910301 -150063839 - MER51B-int LTR ERV1 -7640 176 1 * 2390 95 5 97 chrX 26910303 26910715 -150063425 - MER51B LTR ERV1 -3 374 1 1754 173 68 57 chrX 26910736 26911189 -150062951 + LTR56 LTR ERV1 9 467 0 542 279 118 43 chrX 26911190 26911512 -150062628 + MLT1J1 LTR MaLR 96 441 -5 9323 89 30 1 chrX 26911958 26913209 -150060931 + HSMAR1 DNA Mariner 1 1287 0 1200 222 47 35 chrX 26913487 26913679 -150060461 + HsTC2 DNA Tc2 2 201 -1697 2323 98 0 3 chrX 26913679 26913975 -150060165 + AluSx SINE Alu 1 295 -17 1200 222 47 35 chrX 26913975 26914120 -150060020 + HsTC2 DNA Tc2 201 343 -1555 552 269 52 21 chrX 26914122 26914315 -150059825 + HsTC2 DNA Tc2 1248 1622 -276 516 270 91 34 chrX 26914708 26914976 -150059164 + MLT1J1 LTR MaLR 26 271 -175 3765 128 28 68 chrX 26915012 26915582 -150058558 + LTR8 LTR ERV1 1 539 -152 2022 141 0 20 chrX 26915582 26915887 -150058253 + AluJb SINE Alu 1 299 -13 3765 128 28 68 chrX 26915887 26916027 -150058113 + LTR8 LTR ERV1 539 683 -8 4733 45 30 0 chrX 26916030 26916602 -150057538 + LTR10C LTR ERV1 1 589 -2 2195 125 0 19 chrX 26917467 26917803 -150056337 - AluSx SINE Alu 0 312 1 277 192 27 0 chrX 26917820 26917893 -150056247 + L1MEd LINE L1 42 116 -6003 10325 218 48 24 chrX 26918515 26919299 -150054841 - HERVL40 LTR ERVL -688 4660 3897 2339 82 0 33 chrX 26919299 26919604 -150054536 - AluSc SINE Alu -14 295 1 10325 218 48 24 chrX 26919604 26921261 -150052879 - HERVL40 LTR ERVL -1451 3897 2036 7637 229 51 68 chrX 26921246 26923354 -150050786 - HERVL40 LTR ERVL -3363 2167 95 * 2121 146 0 0 chrX 26923354 26923655 -150050485 - AluJb SINE Alu -11 301 1 7637 229 51 68 chrX 26923655 26923740 -150050400 - HERVL40 LTR ERVL -5435 95 10 583 183 43 25 chrX 26923747 26923912 -150050228 - LTR40b LTR ERVL 0 462 304 801 243 11 11 chrX 26923926 26924115 -150050025 + REP3 LTR ERV 1 189 -373 558 173 15 68 chrX 26926101 26926234 -150047906 + REP3 LTR ERV 201 326 -236 2441 79 7 7 chrX 26926235 26926570 -150047570 + AluSx SINE Alu 6 340 0 882 179 62 10 chrX 26926573 26926768 -150047372 + REP3 LTR ERV 314 518 -44 1442 228 24 9 chrX 26926785 26927114 -150047026 - LTR40a LTR ERVL -185 334 1 251 337 0 0 chrX 26927380 26927475 -150046665 + (CAG)n Simple_repeat Simple_repeat 2 96 0 243 223 25 25 chrX 26927533 26927654 -150046486 + (CGG)n Simple_repeat Simple_repeat 1 121 0 2331 106 0 3 chrX 26929155 26929457 -150044683 - AluSg SINE Alu -9 301 1 3240 118 37 85 chrX 26929572 26930219 -150043921 + LTR8A LTR ERV1 1 616 -111 562 133 0 0 chrX 26930232 26930307 -150043833 + AluSg/x SINE Alu 211 285 -27 462 49 0 0 chrX 26930307 26930368 -150043772 + (CA)n Simple_repeat Simple_repeat 2 62 0 606 186 8 17 chrX 26930371 26930489 -150043651 + LTR8 LTR ERV1 575 691 0 184 351 54 18 chrX 26930492 26930660 -150043480 + L2 LINE L2 2737 2910 -404 834 319 6 16 chrX 26930660 26930973 -150043167 - LTR16B LTR ERVL 0 464 155 1019 255 86 65 chrX 26930973 26931169 -150042971 + MER41C LTR ERV1 1 191 -363 2203 90 7 13 chrX 26931169 26931470 -150042670 + AluSx SINE Alu 1 299 -13 1019 255 86 65 chrX 26931470 26931807 -150042333 + MER41C LTR ERV1 191 545 -9 386 302 0 104 chrX 26931809 26931991 -150042149 - LTR16B LTR ERVL -298 166 4 400 335 116 55 chrX 26931999 26932309 -150041831 + L2 LINE L2 2916 3244 -28 4178 87 9 2 chrX 26933287 26933837 -150040303 - MER41A LTR ERV1 0 554 1 2477 82 0 19 chrX 26934054 26934372 -150039768 + AluSx SINE Alu 1 312 0 309 120 40 0 chrX 26934517 26934567 -150039573 - L1MD2 LINE L1 -3 6356 6305 3498 135 80 55 chrX 26934572 26935259 -150038881 + MER50 LTR ERV1 8 711 -23 4631 164 24 71 chrX 26935259 26935358 -150038782 - L1MD2 LINE L1 -49 6310 6208 1618 158 75 22 chrX 26935358 26935636 -150038504 - AluJo SINE Alu -18 294 2 4631 164 24 71 chrX 26935636 26935764 -150038376 - L1MD2 LINE L1 -151 6208 6076 2360 110 3 0 chrX 26935764 26936074 -150038066 - AluSq SINE Alu -2 311 1 4631 164 24 71 chrX 26936074 26937182 -150036958 - L1MD2 LINE L1 -283 6076 5035 371 138 0 0 chrX 26937272 26937330 -150036810 - MLT1B LTR MaLR 0 390 333 1859 213 87 0 chrX 27037404 27037794 -149936346 + MER69 DNA AcHobo 647 1070 -1456 249 221 44 0 chrX 27037829 27037897 -149936243 + (TA)n Simple_repeat Simple_repeat 1 71 0 953 214 94 18 chrX 27037903 27038179 -149935961 + MER69 DNA AcHobo 2223 2519 -7 201 74 0 0 chrX 27038466 27038493 -149935647 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 808 303 17 14 chrX 27039985 27040282 -149933858 + LTR16A LTR ERVL 153 450 0 354 222 22 0 chrX 27040712 27040802 -149933338 - MER33 DNA MER1_type 0 363 272 21 57 0 0 chrX 27041110 27041145 -149932995 + GC_rich Low_complexity Low_complexity 1 35 0 2095 120 0 0 chrX 27041982 27042291 -149931849 + AluSx SINE Alu 1 309 -3 295 253 101 39 chrX 27042890 27043068 -149931072 + L3 LINE CR1 1098 1286 -291 222 263 40 30 chrX 27043753 27043852 -149930288 - L2 LINE L2 -1099 2215 2116 300 200 0 0 chrX 27043852 27043912 -149930228 + Charlie7 DNA MER1_type 35 94 -2518 1631 121 85 21 chrX 27043914 27044195 -149929945 - AluJb SINE Alu -13 299 1 1814 133 55 7 chrX 27044201 27044348 -149929792 - AluSx SINE Alu -5 307 168 1614 119 44 8 chrX 27044348 27044600 -149929540 - AluSp SINE Alu -44 269 9 1814 133 55 7 chrX 27044600 27044745 -149929395 - AluSx SINE Alu -144 168 1 942 127 0 0 chrX 27044747 27044881 -149929259 - AluSq/x SINE Alu -179 134 1 589 92 163 0 chrX 27044899 27044997 -149929143 - L1MD3 LINE L1 -340 7655 7542 320 298 75 25 chrX 27045206 27045367 -149928773 - L2 LINE L2 -1231 2083 1915 1167 112 0 0 chrX 27045765 27045944 -149928196 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1944 102 3 11 chrX 27045944 27046227 -149927913 - AluSq SINE Alu -32 281 1 1201 276 68 40 chrX 27046231 27046702 -149927438 - HERV16 LTR ERVL -2660 2336 1853 367 226 191 9 chrX 27046704 27046819 -149927321 + LTR16C LTR ERVL 194 329 -162 2329 113 3 42 chrX 27046836 27047166 -149926974 + L1MA5 LINE L1 5757 6072 -228 2416 99 0 43 chrX 27047166 27047518 -149926622 + MER1B DNA MER1_type 1 337 0 2329 113 3 42 chrX 27047518 27047566 -149926574 + L1MA5 LINE L1 6072 6120 -180 1901 130 20 7 chrX 27047566 27047865 -149926275 - AluJb SINE Alu -9 303 1 398 298 57 14 chrX 27048073 27048214 -149925926 + MIR SINE MIR 8 154 -108 859 236 75 8 chrX 27048372 27048605 -149925535 - L1MD3 LINE L1 -179 7816 7454 1852 125 53 23 chrX 27048605 27048908 -149925232 + AluJb SINE Alu 1 312 0 859 236 75 8 chrX 27048908 27048922 -149925218 - L1MD3 LINE L1 -541 7454 7442 295 265 53 53 chrX 27048928 27048973 -149925167 + L1MC4a LINE L1 5911 5955 -1853 1178 164 103 0 chrX 27048973 27049187 -149924953 - MER46A DNA MER2_type 0 236 1 295 265 53 53 chrX 27049187 27049292 -149924848 + L1MC4a LINE L1 5954 6061 -1747 796 156 8 118 chrX 27049334 27049572 -149924568 + L1MC4 LINE L1 6930 7141 -901 329 268 73 0 chrX 27049572 27049654 -149924486 - L1MC4 LINE L1 -1340 6702 6615 243 262 71 0 chrX 27049655 27049739 -149924401 - L1MC4 LINE L1 -1339 6703 6614 243 228 22 43 chrX 27049657 27049749 -149924391 + L1MC4 LINE L1 6614 6703 -1339 233 172 35 0 chrX 27049752 27049810 -149924330 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 306 261 0 11 chrX 27049822 27049910 -149924230 + L1MC4 LINE L1 7185 7271 -771 1822 125 0 104 chrX 27049910 27050109 -149924031 - AluJo SINE Alu 0 302 151 1806 157 3 10 chrX 27050109 27050422 -149923718 - AluJb SINE Alu -1 311 1 1822 125 0 104 chrX 27050422 27050559 -149923581 - AluJo SINE Alu -151 151 1 2464 213 58 85 chrX 27051184 27051484 -149922656 + L1MC4 LINE L1 7161 7467 -575 2052 167 11 19 chrX 27051484 27051850 -149922290 - MLT1A1 LTR MaLR 0 365 3 2464 213 58 85 chrX 27051850 27051934 -149922206 + L1MC4 LINE L1 7467 7552 -490 2023 77 43 47 chrX 27051934 27052233 -149921907 + AluSx SINE Alu 1 298 -14 2464 213 58 85 chrX 27052233 27052515 -149921625 + L1MC4 LINE L1 7552 7840 -202 2228 86 3 16 chrX 27052515 27052829 -149921311 + AluSx SINE Alu 1 310 -2 2464 213 58 85 chrX 27052829 27052894 -149921246 + L1MC4 LINE L1 7840 7905 -137 1701 165 27 0 chrX 27052894 27053191 -149920949 + AluJb SINE Alu 1 305 -7 2464 213 58 85 chrX 27053191 27053362 -149920778 + L1MC4 LINE L1 7905 8042 0 789 169 50 30 chrX 27054225 27054375 -149919765 + L1MB2 LINE L1 5967 6123 -48 2106 77 57 17 chrX 27054375 27054673 -149919467 + AluSg SINE Alu 1 310 0 789 169 50 30 chrX 27054673 27054723 -149919417 + L1MB2 LINE L1 6123 6171 0 22 0 0 0 chrX 27054723 27054745 -149919395 + AT_rich Low_complexity Low_complexity 1 22 0 506 133 0 0 chrX 27054792 27054867 -149919273 - Alu SINE Alu -9 302 228 895 181 0 12 chrX 27054869 27055035 -149919105 - AluJo SINE Alu -148 164 1 348 24 0 0 chrX 27055546 27055587 -149918553 + (TG)n Simple_repeat Simple_repeat 1 41 0 613 275 154 51 chrX 27056210 27056566 -149917574 - MLT1K LTR MaLR -116 472 80 1291 293 74 24 chrX 27056588 27057086 -149917054 + MLT1G1 LTR MaLR 73 595 0 728 149 8 30 chrX 27057097 27057231 -149916909 + MSTC LTR MaLR 1 131 -297 5234 333 43 34 chrX 27057240 27057254 -149916886 + ERVL LTR ERVL 2355 2367 -3397 2246 99 0 0 chrX 27057254 27057556 -149916584 + AluSg1 SINE Alu 1 302 -7 5234 333 43 34 chrX 27057556 27058245 -149915895 + ERVL LTR ERVL 2367 3048 -2716 1859 155 16 0 chrX 27058245 27058549 -149915591 - AluJo SINE Alu -3 309 1 5234 333 43 34 chrX 27058549 27059279 -149914861 + ERVL LTR ERVL 3048 3769 -1995 2747 71 16 27 chrX 27059279 27059647 -149914493 + THE1B LTR MaLR 1 364 0 5234 333 43 34 chrX 27059647 27060860 -149913280 + ERVL LTR ERVL 3769 5029 -735 943 267 87 76 chrX 27061309 27061758 -149912382 + LTR16A LTR ERVL 1 454 -3 8214 160 58 24 chrX 27061976 27063505 -149910635 - MER45R DNA AcHobo 0 1581 1 1131 258 21 14 chrX 27063561 27063848 -149910292 - LTR16C LTR ERVL 0 491 203 393 70 0 0 chrX 27065185 27065242 -149908898 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1351 175 0 40 chrX 27065242 27065493 -149908647 - AluJo SINE Alu -27 285 45 1761 142 35 17 chrX 27065534 27065823 -149908317 - AluJb SINE Alu -18 294 1 372 321 157 24 chrX 27065888 27066339 -149907801 - L1ME4a LINE L1 -75 6046 5536 195 236 135 81 chrX 27066686 27066834 -149907306 + L2 LINE L2 2925 3080 -192 1847 205 42 16 chrX 27066894 27067323 -149906817 - LTR47B LTR ERVL -3 440 1 2307 111 0 7 chrX 27067340 27067646 -149906494 - AluSx SINE Alu -8 304 1 2189 122 7 0 chrX 27068253 27068548 -149905592 + AluJb SINE Alu 1 297 -15 197 319 14 0 chrX 27068552 27068624 -149905516 + MIR SINE MIR 136 208 -54 337 224 33 125 chrX 27069640 27069792 -149904348 - MLT1H LTR MaLR -169 380 243 997 136 6 40 chrX 27069792 27069968 -149904172 + AluJb SINE Alu 136 305 -7 328 249 115 46 chrX 27069971 27070188 -149903952 - MLT1H LTR MaLR -296 253 22 1799 167 7 7 chrX 27070232 27070526 -149903614 + AluJb SINE Alu 3 296 -16 698 129 88 82 chrX 27070682 27070750 -149903390 - L1MA9 LINE L1 -5 6307 6241 2262 65 76 7 chrX 27070750 27071041 -149903099 - AluY SINE Alu 0 311 1 698 129 88 82 chrX 27071041 27071143 -149902997 - L1MA9 LINE L1 -71 6241 6136 2444 92 0 0 chrX 27071156 27071451 -149902689 + AluSx SINE Alu 1 295 -17 840 154 0 8 chrX 27071453 27071576 -149902564 - AluJo/FLAM SINE Alu -190 122 1 2380 107 0 3 chrX 27072359 27072667 -149901473 + AluSp SINE Alu 1 307 -6 2192 100 29 0 chrX 27072966 27073245 -149900895 + AluSx SINE Alu 3 289 -23 1667 147 25 10 chrX 27073304 27073365 -149900775 - MER33 DNA MER1_type -2262 323 264 2038 128 17 3 chrX 27073365 27073653 -149900487 - AluJb SINE Alu -19 293 2 1667 147 25 10 chrX 27073653 27073905 -149900235 - MER33 DNA MER1_type -2321 264 5 275 318 11 0 chrX 27074118 27074206 -149899934 + L1MC/D LINE L1 5494 5582 -2226 893 139 23 0 chrX 27074246 27074375 -149899765 + FLAM_C SINE Alu 2 133 0 570 304 126 29 chrX 27075831 27076212 -149897928 - LTR16A LTR ERVL 0 450 33 237 307 68 11 chrX 27076230 27076318 -149897822 - MIR SINE MIR -168 94 2 234 132 0 0 chrX 27076661 27076699 -149897441 + L1P4 LINE L1 5870 5907 -259 1890 127 79 7 chrX 27076700 27076992 -149897148 + AluSq SINE Alu 1 313 0 1981 118 3 7 chrX 27076999 27077296 -149896844 + L1PA15 LINE L1 5870 6165 0 2212 103 0 25 chrX 27077463 27077798 -149896342 - AluSx SINE Alu 0 327 1 1667 151 0 109 chrX 27077886 27077906 -149896234 - AluJb SINE Alu 0 302 281 357 24 0 0 chrX 27077906 27077948 -149896192 + (TG)n Simple_repeat Simple_repeat 1 42 0 1667 151 0 109 chrX 27077948 27078265 -149895875 - AluJb SINE Alu -21 281 2 931 256 23 5 chrX 27078281 27078500 -149895640 - MIR SINE MIR -14 248 26 665 276 20 20 chrX 27078954 27079153 -149894987 + MIR3 SINE MIR 10 208 0 1991 156 0 20 chrX 27079670 27079971 -149894169 - AluJb SINE Alu -16 296 2 206 323 16 0 chrX 27080685 27080747 -149893393 + MIR SINE MIR 88 150 -112 729 235 59 40 chrX 27081648 27081920 -149892220 - LTR33 LTR ERVL -7 514 238 2647 10 10 0 chrX 27082172 27082460 -149891680 - AluYa5 SINE Alu -3 308 18 873 123 0 0 chrX 27082508 27082630 -149891510 - AluSg/x SINE Alu -1 308 187 1501 88 0 0 chrX 27082839 27083031 -149891109 + AluSg/x SINE Alu 121 312 0 253 271 115 0 chrX 27083032 27083128 -149891012 + L1MC4a LINE L1 7166 7272 -536 22 0 0 0 chrX 27083130 27083152 -149890988 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chrX 27083607 27083659 -149890481 + AT_rich Low_complexity Low_complexity 1 52 0 986 155 12 6 chrX 27084214 27084422 -149889718 + AluSg/x SINE Alu 122 330 0 2227 109 3 7 chrX 27084621 27084923 -149889217 - AluSx SINE Alu -11 301 1 21 0 0 0 chrX 27084989 27085010 -149889130 + AT_rich Low_complexity Low_complexity 1 21 0 886 284 119 12 chrX 27085637 27086123 -149888017 + L1MC4 LINE L1 7346 7883 -159 1438 204 227 14 chrX 27088810 27089250 -149884890 - MLT1F LTR MaLR -8 534 1 26 50 0 0 chrX 27090480 27090520 -149883620 + AT_rich Low_complexity Low_complexity 1 40 0 2253 95 0 38 chrX 27090725 27091040 -149883100 - AluSx SINE Alu -9 303 1 302 264 70 23 chrX 27091042 27091171 -149882969 - L1MC4a LINE L1 -1904 5904 5770 201 292 0 0 chrX 27091411 27091459 -149882681 + L2 LINE L2 3262 3309 -4 1873 142 46 4 chrX 27092569 27092850 -149881290 - AluJo SINE Alu -17 295 3 2288 86 0 20 chrX 27093153 27093455 -149880685 - AluSx SINE Alu -3 309 14 2181 109 3 13 chrX 27093687 27093990 -149880150 - AluJb SINE Alu -12 300 1 1171 216 122 10 chrX 27093993 27094289 -149879851 - MLT1D LTR MaLR -176 329 1 747 267 20 40 chrX 27094367 27094405 -149879735 - LTR16C LTR ERVL -3 488 451 1725 141 48 4 chrX 27094405 27094704 -149879436 + AluJo SINE Alu 1 311 0 747 267 20 40 chrX 27094704 27094911 -149879229 - LTR16C LTR ERVL -40 451 247 * 993 238 36 8 chrX 27094908 27095156 -149878984 - MLT1C LTR MaLR -14 453 199 2259 102 3 3 chrX 27095182 27095486 -149878654 - AluSq SINE Alu -9 304 1 26 0 0 0 chrX 27095488 27095514 -149878626 + AT_rich Low_complexity Low_complexity 1 26 0 2466 94 126 5 chrX 27095677 27096058 -149878082 + MSTA LTR MaLR 1 427 -1 2206 108 0 34 chrX 27096117 27096440 -149877700 - AluSx SINE Alu 0 312 1 527 247 110 22 chrX 27096564 27096746 -149877394 - MLT1C LTR MaLR -307 198 1 314 172 47 31 chrX 27097886 27097950 -149876190 + MLT1H LTR MaLR 229 293 -256 225 228 105 0 chrX 27098005 27098062 -149876078 - LTR16C LTR ERVL -107 384 322 1939 152 9 40 chrX 27098228 27098576 -149875564 - MER1B DNA MER1_type 0 337 1 1147 152 0 0 chrX 27098588 27098752 -149875388 - AluJb SINE Alu -14 298 135 2099 139 3 3 chrX 27099134 27099435 -149874705 + AluSq SINE Alu 1 301 -12 2205 131 33 38 chrX 27099952 27100318 -149873822 - THE1B LTR MaLR 0 364 1 447 310 0 22 chrX 27100589 27100773 -149873367 + (TG)n Simple_repeat Simple_repeat 1 180 0 1040 268 84 11 chrX 27101152 27101533 -149872607 + LTR16C LTR ERVL 81 489 -2 286 200 57 14 chrX 27101879 27101949 -149872191 + L2 LINE L2 3193 3265 -7 1639 100 174 8 chrX 27102633 27102895 -149871245 - AluSg SINE Alu 0 303 2 582 194 97 29 chrX 27103299 27103474 -149870666 + LTR16C LTR ERVL 298 484 -7 2248 120 0 0 chrX 27103615 27103916 -149870224 - AluSx SINE Alu -11 301 1 239 183 174 18 chrX 27104773 27104860 -149869280 - MIR SINE MIR -44 218 116 1682 259 88 4 chrX 27105284 27105786 -149868354 - MLT1H1 LTR MaLR 0 555 12 243 0 0 0 chrX 27106587 27106614 -149867526 + (CA)n Simple_repeat Simple_repeat 1 27 0 1477 121 5 0 chrX 27106871 27107069 -149867071 - AluJb SINE Alu -8 304 106 2228 122 3 0 chrX 27107070 27107374 -149866766 + AluSx SINE Alu 1 305 -7 771 168 0 25 chrX 27107375 27107494 -149866646 - FLAM_A SINE Alu -17 116 1 1500 213 141 62 chrX 27107498 27107630 -149866510 + MLT1G1 LTR MaLR 53 173 -422 2129 209 77 62 chrX 27107630 27108242 -149865898 - MLT1E3 LTR MaLR 0 624 4 1500 213 141 62 chrX 27108242 27108611 -149865529 + MLT1G1 LTR MaLR 173 594 -1 2250 132 0 0 chrX 27109038 27109348 -149864792 - AluSx SINE Alu -2 310 1 555 250 0 0 chrX 27109460 27109588 -149864552 + AluSq/x SINE Alu 2 129 -184 331 177 0 16 chrX 27109961 27110046 -149864094 + Alu SINE Alu 226 309 0 2226 98 0 0 chrX 27110062 27110338 -149863802 + AluSx SINE Alu 5 280 -32 1853 142 35 7 chrX 27110359 27110648 -149863492 + AluJo SINE Alu 1 297 -15 661 118 59 88 chrX 27111813 27111949 -149862191 + FLAM_A SINE Alu 1 132 -1 352 264 151 31 chrX 27113453 27113612 -149860528 + L1ME3 LINE L1 5531 5708 -456 2417 91 13 0 chrX 27113614 27113952 -149860188 + AluSq SINE Alu 1 342 0 599 258 6 0 chrX 27113952 27114111 -149860029 + LTR16C LTR ERVL 332 491 0 794 279 52 64 chrX 27114124 27114547 -149859593 - L3b LINE CR1 -27 1556 1139 1103 240 92 43 chrX 27115346 27115692 -149858448 + L1ME3 LINE L1 5734 6096 -66 2161 109 37 3 chrX 27115700 27115994 -149858146 + AluSx SINE Alu 1 304 -8 5854 76 11 22 chrX 27116000 27116283 -149857857 + L1PB2 LINE L1 5321 5606 -545 2307 104 0 0 chrX 27116283 27116580 -149857560 - AluY SINE Alu -14 297 1 5854 76 11 22 chrX 27116580 27117138 -149857002 + L1PB2 LINE L1 5606 6148 -3 24 115 0 0 chrX 27117139 27117261 -149856879 + AT_rich Low_complexity Low_complexity 1 122 0 2229 112 7 0 chrX 27117261 27117555 -149856585 + AluSx SINE Alu 1 296 -16 1018 241 51 19 chrX 27117555 27117812 -149856328 - MLT1E3 LTR MaLR -210 414 150 664 99 18 9 chrX 27117813 27117924 -149856216 + (TTCC)n Simple_repeat Simple_repeat 2 113 0 1510 172 104 0 chrX 27117928 27118207 -149855933 - AluJb SINE Alu -4 308 1 2222 116 3 0 chrX 27118234 27118528 -149855612 + AluSx SINE Alu 1 295 -17 824 174 0 0 chrX 27118548 27118680 -149855460 - MLT1E3 LTR MaLR -522 132 1 371 167 17 0 chrX 27118978 27119038 -149855102 - U7 snRNA snRNA -1 62 2 1546 143 21 21 chrX 27119074 27119361 -149854779 + L1MB2 LINE L1 5883 6169 -2 1678 190 7 10 chrX 27119369 27119659 -149854481 + AluJb SINE Alu 1 289 -23 2391 145 3 3 chrX 27120305 27120670 -149853470 + MLT1A1 LTR MaLR 1 365 0 260 138 46 62 chrX 27120681 27120746 -149853394 + LTR50 LTR ERVL 727 790 -5 257 256 47 23 chrX 27120982 27121068 -149853072 + MLT1L LTR MaLR 1 88 -527 709 278 88 48 chrX 27121101 27121501 -149852639 + MLT1L LTR MaLR 200 615 0 229 265 15 91 chrX 27122132 27122264 -149851876 + L2 LINE L2 1644 1765 -1549 316 202 34 22 chrX 27122767 27122856 -149851284 + L1ME3A LINE L1 5877 5966 -204 1894 111 94 26 chrX 27122992 27123343 -149850797 + THE1C LTR MaLR 1 375 0 25 65 0 0 chrX 27123346 27123392 -149850748 + AT_rich Low_complexity Low_complexity 1 46 0 236 269 51 39 chrX 27123590 27123668 -149850472 - L2 LINE L2 -545 2769 2691 1141 141 17 0 chrX 27123671 27123848 -149850292 + AluJo SINE Alu 122 301 -11 429 168 99 20 chrX 27124255 27124356 -149849784 - L1MB8 LINE L1 -46 6132 6024 2280 134 0 6 chrX 27124356 27124670 -149849470 + AluSx SINE Alu 1 312 0 423 258 106 8 chrX 27124718 27124850 -149849290 - L1MEd LINE L1 -5673 446 302 473 193 171 101 chrX 27124868 27124923 -149849217 - L1MEd LINE L1 -5874 245 195 2419 84 0 3 chrX 27124923 27125221 -149848919 - AluSg SINE Alu -13 297 1 473 193 171 101 chrX 27125221 27125279 -149848861 - L1MEd LINE L1 -5924 195 143 2373 93 0 6 chrX 27125279 27125590 -149848550 - AluSx SINE Alu -3 309 1 473 193 171 101 chrX 27125590 27125703 -149848437 - L1MEd LINE L1 -5976 143 2 207 289 0 0 chrX 27125999 27126051 -149848089 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 654 211 0 30 chrX 27126275 27126408 -149847732 - FLAM_A SINE Alu -13 129 1 652 128 27 54 chrX 27126874 27127023 -149847117 - L1MA8 LINE L1 0 6291 6147 1031 95 12 35 chrX 27127442 27127611 -149846529 + L1MB3 LINE L1 6011 6175 -8 789 147 22 29 chrX 27129758 27129894 -149844246 + AluJo SINE Alu 2 136 -176 26 93 0 0 chrX 27130148 27130223 -149843917 + AT_rich Low_complexity Low_complexity 1 75 0 609 240 133 5 chrX 27130956 27131152 -149842988 - L1ME3 LINE L1 0 6162 5942 2287 101 0 3 chrX 27131403 27131699 -149842441 - AluSx SINE Alu -17 295 1 526 239 80 52 chrX 27132575 27132864 -149841276 - L1MEd LINE L1 -3000 3129 2833 502 213 60 105 chrX 27132862 27133177 -149840963 - HAL1 LINE L1 -133 2374 2074 * 1454 131 0 0 chrX 27133372 27133609 -149840531 - L1MA7 LINE L1 0 6291 6055 2162 122 55 50 chrX 27133609 27133779 -149840361 + L1MA7 LINE L1 5618 5786 -505 2206 116 0 28 chrX 27133779 27134099 -149840041 + AluSx SINE Alu 1 311 -1 2162 122 55 50 chrX 27134099 27134330 -149839810 + L1MA7 LINE L1 5786 6021 -270 2087 129 3 0 chrX 27134335 27134629 -149839511 - AluSx SINE Alu -17 295 1 317 317 18 18 chrX 27134639 27134806 -149839334 - L1MEd LINE L1 -3303 2826 2660 283 234 108 19 chrX 27134868 27135026 -149839114 + L1M4 LINE L1 2795 2966 -3180 870 118 15 37 chrX 27135086 27135222 -149838918 - FLAM_C SINE Alu 0 133 1 306 305 15 46 chrX 27135612 27135809 -149838331 - L1MEd LINE L1 -5917 202 12 21 0 0 0 chrX 27136203 27136224 -149837916 + AT_rich Low_complexity Low_complexity 1 21 0 1698 184 4 0 chrX 27136917 27137195 -149836945 + AluJb SINE Alu 1 279 -33 216 0 0 0 chrX 27137200 27137224 -149836916 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1608 148 16 59 chrX 27137239 27137542 -149836598 + AluJo SINE Alu 1 290 -22 833 143 30 8 chrX 27138211 27138344 -149835796 - AluJo SINE Alu -176 136 1 265 178 22 0 chrX 27138825 27138870 -149835270 + MER57A LTR ERV1 291 336 -67 787 171 28 74 chrX 27139713 27139889 -149834251 - AluJo SINE Alu -22 290 123 2219 117 0 0 chrX 27140308 27140607 -149833533 - AluSx SINE Alu -13 299 1 340 273 43 121 chrX 27140775 27141031 -149833109 - L3 LINE CR1 -7 1570 1335 513 202 34 8 chrX 27141351 27141470 -149832670 + L2 LINE L2 3192 3313 0 325 237 62 62 chrX 27141498 27141675 -149832465 + L2 LINE L2 1634 1810 -1504 773 232 11 11 chrX 27141719 27141896 -149832244 - AluSg/x SINE Alu -9 301 125 841 174 45 6 chrX 27142485 27142663 -149831477 - MER53 DNA DNA -4 185 1 739 179 0 0 chrX 27143358 27143475 -149830665 + FLAM_C SINE Alu 1 117 -16 2397 87 0 0 chrX 27143796 27144094 -149830046 - AluSq SINE Alu -14 299 2 21 57 0 0 chrX 27144096 27144131 -149830009 + AT_rich Low_complexity Low_complexity 1 35 0 185 323 48 16 chrX 27144614 27144676 -149829464 - MIR SINE MIR -60 148 85 1681 171 27 34 chrX 27145145 27145518 -149828622 + L1MC3 LINE L1 7179 7687 -308 2150 131 0 3 chrX 27145518 27145815 -149828325 + AluSx SINE Alu 1 296 -16 1155 159 0 0 chrX 27145815 27145991 -149828149 + AluJb SINE Alu 134 309 -3 229 264 91 83 chrX 27146031 27146273 -149827867 + L1ME3A LINE L1 5927 6170 0 2444 95 0 0 chrX 27146962 27147266 -149826874 - AluSx SINE Alu -8 304 1 1953 82 0 0 chrX 27147652 27147929 -149826211 - AluSx SINE Alu 0 331 55 3631 119 18 18 chrX 27147945 27148445 -149825695 - L1MB3 LINE L1 -2 6181 5679 2164 125 0 32 chrX 27148445 27148758 -149825382 + AluSx SINE Alu 1 303 -9 3631 119 18 18 chrX 27148758 27148826 -149825314 - L1MB3 LINE L1 -503 5680 5613 2363 158 21 3 chrX 27148837 27149217 -149824923 - MSTD LTR MaLR -9 387 1 850 152 0 14 chrX 27149217 27149362 -149824778 - L1MB3 LINE L1 -565 5618 5476 243 122 0 0 chrX 27149381 27149430 -149824710 - L1MB3 LINE L1 -676 5495 5447 228 182 0 0 chrX 27149533 27149577 -149824563 + T-rich Low_complexity Low_complexity 2 45 0 1628 117 120 15 chrX 27149655 27149921 -149824219 - AluSg SINE Alu -16 294 1 1910 69 138 0 chrX 27149924 27150185 -149823955 - AluSq SINE Alu -6 297 1 798 120 0 38 chrX 27150190 27150323 -149823817 - FLAM_C SINE Alu -5 128 1 801 206 11 22 chrX 27150500 27150680 -149823460 + L1ME3 LINE L1 5950 6127 -35 306 132 0 0 chrX 27151059 27151112 -149823028 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 4238 111 34 2 chrX 27151190 27151805 -149822335 + MER41B LTR ERV1 1 635 0 836 167 71 6 chrX 27152814 27152982 -149821158 - L1MC3 LINE L1 -8 7777 7599 1297 149 0 0 chrX 27152982 27153177 -149820963 - AluSg/x SINE Alu -11 301 107 1257 199 26 132 chrX 27153177 27153736 -149820404 - MLT1G1 LTR MaLR -78 477 1 23 33 0 0 chrX 27153845 27153875 -149820265 + AT_rich Low_complexity Low_complexity 1 30 0 2264 117 0 13 chrX 27153942 27154258 -149819882 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 27154353 27154376 -149819764 + AT_rich Low_complexity Low_complexity 1 23 0 781 170 0 30 chrX 27154434 27154569 -149819571 + FLAM_C SINE Alu 3 133 0 279 298 0 0 chrX 27155285 27155369 -149818771 - L1MC/D LINE L1 -2026 5782 5699 210 37 0 0 chrX 27155431 27155458 -149818682 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2079 115 4 0 chrX 27155461 27155739 -149818401 - AluSx SINE Alu -33 279 1 2386 100 0 3 chrX 27156641 27156952 -149817188 - AluSq SINE Alu -3 310 1 628 255 152 41 chrX 27157146 27157168 -149816972 + L1MC4a LINE L1 5687 5705 -2103 1945 141 70 6 chrX 27157168 27157495 -149816645 + MER7A DNA MER2_type 1 346 0 628 255 152 41 chrX 27157495 27157907 -149816233 + L1MC4a LINE L1 5705 6169 -1639 2162 124 0 0 chrX 27157914 27158204 -149815936 + AluSx SINE Alu 1 290 -22 1935 119 7 20 chrX 27158606 27158900 -149815240 - AluSq SINE Alu -23 290 1 2063 134 7 0 chrX 27159180 27159471 -149814669 + AluJo SINE Alu 3 295 -17 1973 129 24 14 chrX 27159474 27159769 -149814371 + AluSx SINE Alu 1 298 -14 722 233 70 73 chrX 27159778 27160065 -149814075 + MLT1G LTR MaLR 110 395 -195 311 333 63 9 chrX 27160076 27160298 -149813842 + L1M4 LINE L1 2644 2877 -3269 688 144 63 0 chrX 27160324 27160435 -149813705 + AluJ SINE Alu 1 118 -184 2246 108 16 0 chrX 27160526 27160831 -149813309 + AluSx SINE Alu 1 310 -2 1147 153 58 2 chrX 27160870 27161112 -149813028 + AluJb SINE Alu 1 308 -4 1042 166 0 28 chrX 27161390 27161408 -149812732 - AluJb SINE Alu 0 312 295 2448 93 0 3 chrX 27161408 27161718 -149812422 - AluSq SINE Alu -4 309 1 1042 166 0 28 chrX 27161718 27161880 -149812260 - AluJb SINE Alu -17 295 137 2445 89 0 0 chrX 27162300 27162604 -149811536 + AluSx SINE Alu 1 304 -8 1789 107 34 4 chrX 27162658 27162920 -149811220 + AluSx SINE Alu 3 272 -40 601 164 0 0 chrX 27162981 27163085 -149811055 - AluSp SINE Alu -7 306 203 1158 99 13 0 chrX 27163090 27163242 -149810898 - AluSp SINE Alu -158 155 2 2325 107 0 22 chrX 27163391 27163710 -149810430 - AluSx SINE Alu 0 312 1 212 330 10 31 chrX 27163796 27163893 -149810247 - MIR SINE MIR -58 204 110 238 182 36 36 chrX 27164135 27164190 -149809950 - MLT1K LTR MaLR -411 177 123 551 214 38 30 chrX 27164255 27164386 -149809754 - FLAM_C SINE Alu -1 132 1 711 216 16 42 chrX 27164497 27164538 -149809602 + MLT1C LTR MaLR 1 42 -425 569 69 0 92 chrX 27164538 27164625 -149809515 + MADE1 DNA Mariner 1 79 -1 711 216 16 42 chrX 27164625 27164832 -149809308 + MLT1C LTR MaLR 42 328 -139 729 131 0 0 chrX 27364834 27364941 -149609199 + AluSp/q SINE Alu 198 304 -9 3093 124 51 42 chrX 27364944 27365150 -149608990 + MER21B LTR ERV1 308 511 -352 2464 48 28 3 chrX 27365150 27365441 -149608699 - AluY SINE Alu -13 298 1 3093 124 51 42 chrX 27365441 27365784 -149608356 + MER21B LTR ERV1 511 862 -1 206 229 0 0 chrX 27365804 27365820 -149608320 + A-rich Low_complexity Low_complexity 1 16 -32 2290 112 3 6 chrX 27365820 27366133 -149608007 + AluSx SINE Alu 1 312 0 206 229 0 0 chrX 27366133 27366164 -149607976 + A-rich Low_complexity Low_complexity 15 48 0 2426 102 0 0 chrX 27366587 27366892 -149607248 + AluSx SINE Alu 1 305 -7 361 245 48 80 chrX 27366970 27367271 -149606869 - LTR38B LTR ERV1 0 610 263 468 230 26 142 chrX 27367321 27367630 -149606510 - LTR38B LTR ERV1 -326 284 12 1780 161 7 0 chrX 27367630 27367904 -149606236 - AluJb SINE Alu -36 276 1 1843 137 20 20 chrX 27367955 27368255 -149605885 + AluJo SINE Alu 1 300 -12 2268 102 0 3 chrX 27368328 27368649 -149605491 + AluSx SINE Alu 1 320 0 2526 64 6 13 chrX 27368650 27368963 -149605177 + AluY SINE Alu 1 311 0 861 76 0 0 chrX 27368973 27369078 -149605062 + FLAM_C SINE Alu 1 105 -38 478 145 12 24 chrX 27369414 27369497 -149604643 - AluS SINE Alu -229 83 2 1640 174 10 13 chrX 27369497 27369807 -149604333 + MER65C LTR ERV1 153 461 0 1265 193 15 45 chrX 27369807 27369943 -149604197 + MER21A LTR ERV1 203 329 -602 2489 88 3 0 chrX 27369943 27370249 -149603891 - AluSx SINE Alu -5 307 1 1265 193 15 45 chrX 27370249 27370377 -149603763 + MER21A LTR ERV1 329 459 -472 1639 149 0 4 chrX 27370391 27370632 -149603508 + AluJo SINE Alu 1 240 -72 471 81 68 0 chrX 27370659 27370733 -149603407 + L1MB3 LINE L1 6096 6174 -9 2399 82 7 23 chrX 27370747 27371053 -149603087 + AluSc SINE Alu 1 301 -8 789 249 185 25 chrX 27371087 27371481 -149602659 + MLT1H LTR MaLR 40 496 -53 938 110 0 8 chrX 27371481 27371608 -149602532 + AluJo SINE Alu 13 138 -174 1883 138 7 7 chrX 27371608 27371897 -149602243 + AluJo SINE Alu 13 301 -11 241 220 0 0 chrX 27371898 27371957 -149602183 + MLT1H LTR MaLR 487 545 -4 1790 93 86 32 chrX 27372076 27372355 -149601785 - AluSx SINE Alu -18 294 1 247 288 0 27 chrX 27373312 27373385 -149600755 + (CATG)n Simple_repeat Simple_repeat 1 71 0 3187 177 46 70 chrX 27373385 27373456 -149600684 - MER69 DNA AcHobo -2 2524 2453 983 110 0 22 chrX 27373456 27373592 -149600548 + FLAM_C SINE Alu 1 133 0 3187 177 46 70 chrX 27373592 27373884 -149600256 - MER69 DNA AcHobo -73 2453 2155 2417 92 0 13 chrX 27373884 27374198 -149599942 + AluSx SINE Alu 1 310 -2 3187 177 46 70 chrX 27374198 27374726 -149599414 - MER69 DNA AcHobo -371 2155 1654 1912 153 3 26 chrX 27374811 27375124 -149599016 - AluJo SINE Alu 0 312 7 673 196 367 0 chrX 27375131 27375371 -149598769 - MER69 DNA AcHobo -1869 657 330 238 224 0 0 chrX 27375481 27375530 -149598610 - MER69 DNA AcHobo -2457 69 21 1925 132 14 0 chrX 27375557 27375837 -149598303 - AluSx SINE Alu -13 299 16 2502 51 3 3 chrX 27375838 27376131 -149598009 - AluSp SINE Alu -4 309 17 555 96 39 10 chrX 27376339 27376443 -149597697 + CT-rich Low_complexity Low_complexity 4 110 0 1650 157 50 4 chrX 27376450 27376712 -149597428 - AluJb SINE Alu -38 274 1 293 111 0 111 chrX 27376732 27376762 -149597378 - MER39 LTR ERV1 -371 336 315 2280 103 3 3 chrX 27376762 27377062 -149597078 - AluSc SINE Alu -9 300 1 293 111 0 111 chrX 27377062 27377094 -149597046 - MER39 LTR ERV1 -392 315 281 281 26 0 0 chrX 27377093 27377131 -149597009 - MSTB1 LTR MaLR -45 387 350 * 1500 151 198 22 chrX 27377169 27377527 -149596613 + MSTA LTR MaLR 4 424 -4 429 117 115 81 chrX 27377538 27377648 -149596492 - MER21A LTR ERV1 -541 166 70 2195 122 0 7 chrX 27377716 27378045 -149596095 - AluSx SINE Alu 0 327 1 347 153 0 28 chrX 27378091 27378163 -149595977 - MER21A LTR ERV1 -861 70 1 2391 103 3 0 chrX 27378232 27378543 -149595597 + AluSp SINE Alu 1 312 -1 1968 144 11 3 chrX 27378546 27378893 -149595247 - L1MB3 LINE L1 -16 6167 5818 1341 118 11 0 chrX 27378929 27379107 -149595033 + AluJb SINE Alu 121 300 -12 375 128 139 35 chrX 27379108 27379194 -149594946 - L1MB3 LINE L1 -356 5824 5730 2149 128 20 0 chrX 27379207 27379504 -149594636 - AluSx SINE Alu -8 304 2 377 317 60 27 chrX 27380336 27380519 -149593621 + L1M4 LINE L1 3318 3506 -2640 264 273 0 0 chrX 27380544 27380599 -149593541 + polypurine Low_complexity Low_complexity 3 57 0 236 322 35 49 chrX 27380603 27380697 -149593443 + L1M4 LINE L1 3520 3613 -2533 2242 97 33 3 chrX 27380697 27380997 -149593143 + AluSg SINE Alu 1 309 -1 236 322 35 49 chrX 27380997 27381045 -149593095 + L1M4 LINE L1 3613 3660 -2486 706 67 0 0 chrX 27381049 27381139 -149593001 + 5S rRNA rRNA 1 90 -31 522 293 26 4 chrX 27381139 27381368 -149592772 + L1M4 LINE L1 3652 3885 -2261 256 208 21 0 chrX 27381394 27381442 -149592698 + MIR SINE MIR 45 93 -115 264 280 56 56 chrX 27381461 27381586 -149592554 + MIR3 SINE MIR 47 171 -37 966 204 47 50 chrX 27381811 27381862 -149592278 + L1MC5 LINE L1 7256 7306 -655 1846 66 70 4 chrX 27381862 27382104 -149592036 + AluY SINE Alu 37 294 -17 966 204 47 50 chrX 27382104 27382128 -149592012 + L1MC5 LINE L1 7306 7329 -632 1075 149 4 115 chrX 27382128 27382198 -149591942 - MER3 DNA MER1_type 0 209 133 1990 105 16 56 chrX 27382198 27382346 -149591794 + AluSx SINE Alu 1 132 -180 2366 91 0 7 chrX 27382346 27382644 -149591496 + AluSp SINE Alu 1 296 -17 1990 105 16 56 chrX 27382644 27382799 -149591341 + AluSx SINE Alu 132 292 -20 1075 149 4 115 chrX 27382799 27382963 -149591177 - MER3 DNA MER1_type -76 133 1 966 204 47 50 chrX 27382963 27383229 -149590911 + L1MC5 LINE L1 7329 7597 -364 1172 96 0 0 chrX 27383233 27383379 -149590761 + AluSq/x SINE Alu 1 146 -167 1785 65 60 155 chrX 27383379 27383535 -149590605 - LTR66 LTR ERVL 0 610 441 459 0 0 0 chrX 27383535 27383586 -149590554 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1785 65 60 155 chrX 27383586 27383815 -149590325 - LTR66 LTR ERVL -169 441 262 2362 84 3 0 chrX 27385250 27385557 -149588583 + AluSx SINE Alu 1 308 0 889 127 8 8 chrX 27385569 27385703 -149588437 + AluJo SINE Alu 1 134 -178 784 82 65 80 chrX 27385714 27385897 -149588243 + L1MA2 LINE L1 5938 6127 -177 1797 143 0 39 chrX 27385897 27386183 -149587957 + AluJb SINE Alu 18 292 -20 2258 111 0 3 chrX 27386243 27386541 -149587599 - AluSx SINE Alu -3 309 13 2344 176 17 28 chrX 27386557 27387024 -149587116 - L1MB5 LINE L1 0 6174 5713 2485 89 0 0 chrX 27387483 27387787 -149586353 - AluSx SINE Alu -8 304 1 2262 108 0 16 chrX 27388458 27388774 -149585366 + AluSx SINE Alu 1 311 -1 2320 75 0 0 chrX 27388834 27389139 -149585001 + AluSg SINE Alu 1 305 0 916 143 0 0 chrX 27389200 27389326 -149584814 + AluSq/x SINE Alu 1 126 -187 2439 65 0 3 chrX 27390090 27390384 -149583756 + AluY SINE Alu 2 294 -17 2375 74 24 0 chrX 27390786 27391083 -149583057 - AluSp SINE Alu -9 304 1 834 214 97 137 chrX 27391208 27391376 -149582764 + L1ME4a LINE L1 5476 5649 -472 2363 98 7 3 chrX 27391376 27391673 -149582467 + AluSc SINE Alu 1 298 -11 834 214 97 137 chrX 27391673 27391754 -149582386 + L1ME4a LINE L1 5649 5732 -389 657 175 0 33 chrX 27391754 27391874 -149582266 + FLAM_A SINE Alu 1 116 -17 834 214 97 137 chrX 27391874 27392210 -149581930 + L1ME4a LINE L1 5732 6034 -87 1953 154 3 3 chrX 27392210 27392508 -149581632 - AluSx SINE Alu -14 298 1 834 214 97 137 chrX 27392508 27392592 -149581548 + L1ME4a LINE L1 6034 6120 -1 1137 133 0 0 chrX 27392847 27393013 -149581127 - AluSg/x SINE Alu -1 311 146 269 83 0 0 chrX 27393013 27393049 -149581091 - Alu SINE Alu -265 37 2 247 154 0 0 chrX 27393016 27393055 -149581085 - AluSg/x SINE Alu -133 167 129 * 233 305 166 44 chrX 27393793 27394154 -149579986 - L2 LINE L2 -641 2673 2269 * 309 273 107 101 chrX 27394152 27394460 -149579680 + L3 LINE CR1 934 1243 -334 2304 105 3 0 chrX 27395317 27395612 -149578528 + AluSx SINE Alu 1 296 -16 1286 214 87 77 chrX 27396351 27396752 -149577388 - MLT2D LTR ERVL -8 406 2 2136 142 0 0 chrX 27396777 27397086 -149577054 - AluSx SINE Alu -3 309 1 233 125 0 0 chrX 27397492 27397540 -149576600 + Alu SINE Alu 255 302 0 2084 114 0 71 chrX 27397566 27397891 -149576249 - AluSx SINE Alu -10 302 1 2374 87 0 7 chrX 27398250 27398549 -149575591 + AluSx SINE Alu 1 297 -15 611 252 174 62 chrX 27398890 27399255 -149574885 + MLT1H1 LTR MaLR 70 493 -62 2320 107 0 3 chrX 27399255 27399564 -149574576 + AluSg SINE Alu 1 308 -2 611 252 174 62 chrX 27399564 27399634 -149574506 + MLT1H1 LTR MaLR 493 554 -1 1852 156 29 16 chrX 27399762 27400069 -149574071 + AluJb SINE Alu 2 312 0 2155 89 64 0 chrX 27400376 27400658 -149573482 - AluSx SINE Alu -12 300 1 669 213 0 0 chrX 27401013 27401135 -149573005 + FLAM_A SINE Alu 1 122 -11 2020 107 29 58 chrX 27401149 27401457 -149572683 + AluSq SINE Alu 3 301 -12 184 171 73 0 chrX 27401572 27401613 -149572527 + L2 LINE L2 3229 3272 0 2032 119 9 25 chrX 27401812 27402130 -149572010 + AluSq SINE Alu 1 313 0 2113 102 0 74 chrX 27402689 27402839 -149571301 + AluSx SINE Alu 1 116 -196 2365 107 0 0 chrX 27402839 27403148 -149570992 + AluSg SINE Alu 1 309 -1 2113 102 0 74 chrX 27403148 27403322 -149570818 + AluSx SINE Alu 116 301 -11 1139 127 6 0 chrX 27403459 27403625 -149570515 + FRAM SINE Alu 4 170 -6 778 70 0 0 chrX 27403710 27403810 -149570330 + HY3 scRNA scRNA 1 100 -1 267 173 0 0 chrX 27403810 27403862 -149570278 + A-rich Low_complexity Low_complexity 1 52 0 2559 64 3 0 chrX 27404111 27404408 -149569732 + AluSp SINE Alu 1 298 -15 2421 94 0 0 chrX 27404431 27404728 -149569412 + AluSx SINE Alu 1 297 -15 3136 194 36 57 chrX 27404831 27405470 -149568670 - L1MD2 LINE L1 -115 6244 5593 585 149 0 0 chrX 27405470 27405557 -149568583 + AluJ/FLAM SINE Alu 13 99 -213 240 86 0 0 chrX 27405563 27405598 -149568542 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 1654 127 141 14 chrX 27405598 27405874 -149568266 + AluSx SINE Alu 2 312 0 3136 194 36 57 chrX 27405874 27406157 -149567983 - L1MD2 LINE L1 -769 5590 5301 1376 106 0 0 chrX 27406166 27406346 -149567794 - AluSp SINE Alu -4 309 130 680 156 57 0 chrX 27406346 27406486 -149567654 - L1MD2 LINE L1 -856 5290 5148 1859 154 6 35 chrX 27406525 27406844 -149567296 + AluJo SINE Alu 1 310 -2 444 271 62 23 chrX 27406913 27407042 -149567098 - L2 LINE L2 0 3313 3180 2288 102 3 0 chrX 27407042 27407335 -149566805 - AluSx SINE Alu -18 294 1 1145 140 9 72 chrX 27408086 27408308 -149565832 - AluSg/x SINE Alu 0 310 103 2434 88 0 0 chrX 27408337 27408634 -149565506 - AluSq SINE Alu -16 297 1 2097 104 18 0 chrX 27409035 27409313 -149564827 + AluSx SINE Alu 18 300 -12 2384 94 0 10 chrX 27410985 27411284 -149562856 - AluSx SINE Alu -10 302 7 31 0 0 0 chrX 27411402 27411433 -149562707 + AT_rich Low_complexity Low_complexity 1 31 0 873 117 58 0 chrX 27411433 27411553 -149562587 - FLAM_C SINE Alu -16 127 1 260 254 0 0 chrX 27411560 27411615 -149562525 - MIR SINE MIR -124 138 84 2372 105 0 16 chrX 27412186 27412501 -149561639 - AluSx SINE Alu -2 310 1 598 186 68 0 chrX 27412636 27412754 -149561386 + Charlie8 DNA MER1_type 76 201 -2216 2046 144 0 16 chrX 27412990 27413296 -149560844 + AluJo SINE Alu 1 301 -11 2267 103 7 7 chrX 27413381 27413682 -149560458 + AluSg SINE Alu 1 301 -9 331 136 0 0 chrX 27413767 27413823 -149560317 - MLT2D LTR ERVL 0 414 368 339 96 0 0 chrX 27413834 27413886 -149560254 + (GA)n Simple_repeat Simple_repeat 1 52 0 1970 137 27 51 chrX 27413888 27414172 -149559968 - MLT2D LTR ERVL -48 366 92 2496 82 3 0 chrX 27414172 27414476 -149559664 + AluSx SINE Alu 1 305 -7 1970 137 27 51 chrX 27414476 27414564 -149559576 - MLT2D LTR ERVL -322 92 3 2283 104 0 13 chrX 27414955 27415264 -149558876 - AluSq SINE Alu -7 306 2 236 56 0 0 chrX 27415266 27415302 -149558838 - AluJo SINE Alu -3 299 264 1298 145 16 0 chrX 27415302 27415488 -149558652 - AluJo SINE Alu -123 189 1 981 173 52 11 chrX 27415514 27415705 -149558435 - AluJo SINE Alu 0 312 114 2537 71 7 0 chrX 27415884 27416194 -149557946 - AluSp SINE Alu 0 313 2 352 215 72 25 chrX 27416236 27416357 -149557783 - MLT1H LTR MaLR -4 545 305 476 273 66 27 chrX 27416384 27416567 -149557573 - MLT1H LTR MaLR -258 291 102 2379 99 13 0 chrX 27416661 27416963 -149557177 - AluSx SINE Alu -6 306 1 192 77 0 0 chrX 27417010 27417036 -149557104 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1899 174 7 3 chrX 27417038 27417343 -149556797 - AluJo SINE Alu -6 306 1 28 29 0 0 chrX 27417355 27417390 -149556750 + AT_rich Low_complexity Low_complexity 1 35 0 2079 94 65 0 chrX 27417390 27417665 -149556475 - AluSp SINE Alu -20 293 1 2178 138 0 19 chrX 27417675 27417993 -149556147 - AluSx SINE Alu 0 312 1 258 32 0 0 chrX 27418000 27418031 -149556109 + (CA)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chrX 27418030 27418052 -149556088 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 2134 95 10 44 chrX 27418052 27418201 -149555939 - AluSx SINE Alu -28 284 148 2444 92 3 0 chrX 27418201 27418507 -149555633 - AluSp SINE Alu -6 307 1 2134 95 10 44 chrX 27418507 27418651 -149555489 - AluSx SINE Alu -164 148 1 4224 126 10 27 chrX 27418658 27418937 -149555203 - L1MC1 LINE L1 -15 6318 6036 2040 156 0 6 chrX 27418937 27419251 -149554889 - AluJb SINE Alu 0 312 1 4224 126 10 27 chrX 27419251 27419672 -149554468 - L1MC1 LINE L1 -297 6036 5630 2324 98 0 3 chrX 27419755 27420051 -149554089 - AluSx SINE Alu -17 295 1 1179 145 0 6 chrX 27420172 27420351 -149553789 + AluSg/x SINE Alu 133 310 0 2553 69 3 7 chrX 27420553 27420859 -149553281 + AluSp SINE Alu 1 305 -8 2124 129 26 19 chrX 27421289 27421496 -149552644 - AluJb SINE Alu 0 312 101 1906 103 106 32 chrX 27421496 27421835 -149552305 - THE1B LTR MaLR 0 364 1 2124 129 26 19 chrX 27421835 27421937 -149552203 - AluJb SINE Alu -211 101 1 2536 64 6 13 chrX 27421947 27422260 -149551880 - AluY SINE Alu 0 311 1 194 0 39 0 chrX 27422261 27422287 -149551853 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 575 140 0 28 chrX 27422287 27422394 -149551746 - AluSg/x SINE Alu -18 294 191 2332 91 0 0 chrX 27422525 27422858 -149551282 + AluSq SINE Alu 1 333 0 780 218 128 13 chrX 27422998 27423232 -149550908 + L1ME3A LINE L1 5890 6150 -20 1928 131 44 13 chrX 27423530 27423828 -149550312 + AluJo SINE Alu 1 307 -5 2465 97 3 0 chrX 27423828 27424137 -149550003 + AluSx SINE Alu 1 310 -2 553 185 179 0 chrX 27424461 27424612 -149549528 - MER5A DNA MER1_type -8 181 4 1802 139 44 41 chrX 27424844 27425139 -149549001 - AluJo SINE Alu -14 298 3 1880 130 29 14 chrX 27425506 27425640 -149548500 + AluSx SINE Alu 3 134 -172 2341 115 0 6 chrX 27425640 27425953 -149548187 + AluSx SINE Alu 1 311 -1 1880 130 29 14 chrX 27425953 27426118 -149548022 + AluSx SINE Alu 134 306 0 1766 162 8 35 chrX 27426254 27426630 -149547510 - pTR5 LTR ERV1 -1331 1107 742 341 271 135 23 chrX 27426642 27426775 -149547365 - MLT1J LTR MaLR -331 180 33 1458 182 111 14 chrX 27426863 27427232 -149546908 + L1M4 LINE L1 681 1085 -5457 374 119 92 73 chrX 27427236 27427312 -149546828 + L1MB8 LINE L1 6068 6148 -30 2201 118 3 0 chrX 27427312 27427616 -149546524 - AluSx SINE Alu -7 305 1 374 119 92 73 chrX 27427616 27427648 -149546492 + L1MB8 LINE L1 6148 6178 0 2457 82 3 9 chrX 27427664 27427979 -149546161 + AluSq SINE Alu 1 313 0 626 150 0 10 chrX 27427991 27428091 -149546049 + AluJb SINE Alu 37 135 -177 2095 132 3 0 chrX 27428091 27428379 -149545761 + AluSx SINE Alu 1 289 -23 327 245 21 32 chrX 27428391 27428485 -149545655 + L1ME1 LINE L1 5876 5968 -198 545 217 9 0 chrX 27428485 27428591 -149545549 + FLAM_C SINE Alu 2 108 -35 21 36 0 0 chrX 27428620 27428648 -149545492 + AT_rich Low_complexity Low_complexity 1 28 0 381 22 0 0 chrX 27428978 27429024 -149545116 + (CA)n Simple_repeat Simple_repeat 2 47 0 2269 110 0 0 chrX 27429838 27430130 -149544010 + AluSx SINE Alu 1 292 -20 1190 115 13 0 chrX 27430179 27430335 -149543805 + AluSg/x SINE Alu 139 296 -14 2374 87 13 3 chrX 27430338 27430647 -149543493 + AluSp SINE Alu 1 312 -1 1939 144 11 3 chrX 27430650 27430997 -149543143 - L1MB3 LINE L1 -16 6167 5818 1342 118 11 0 chrX 27431033 27431211 -149542929 + AluJb SINE Alu 121 300 -12 373 163 105 0 chrX 27431212 27431298 -149542842 - L1MB3 LINE L1 -356 5824 5730 2134 131 20 0 chrX 27431311 27431608 -149542532 - AluSx SINE Alu -8 304 2 375 317 60 27 chrX 27432440 27432623 -149541517 + L1M4 LINE L1 3318 3506 -2640 264 273 0 0 chrX 27432648 27432703 -149541437 + polypurine Low_complexity Low_complexity 3 57 0 259 308 35 49 chrX 27432707 27432801 -149541339 + L1M4 LINE L1 3520 3613 -2533 2245 97 33 3 chrX 27432801 27433101 -149541039 + AluSg SINE Alu 1 309 -1 259 308 35 49 chrX 27433101 27433149 -149540991 + L1M4 LINE L1 3613 3660 -2486 715 67 0 0 chrX 27433153 27433243 -149540897 + 5S rRNA rRNA 1 90 -31 536 293 26 4 chrX 27433243 27433472 -149540668 + L1M4 LINE L1 3652 3885 -2261 239 208 21 0 chrX 27433498 27433546 -149540594 + MIR SINE MIR 45 93 -115 233 269 59 59 chrX 27433565 27433684 -149540456 + MIR3 SINE MIR 47 165 -43 981 204 47 50 chrX 27433914 27433965 -149540175 + L1MC5 LINE L1 7256 7306 -655 1858 66 70 4 chrX 27433965 27434207 -149539933 + AluY SINE Alu 37 294 -17 981 204 47 50 chrX 27434207 27434231 -149539909 + L1MC5 LINE L1 7306 7329 -632 1009 149 4 115 chrX 27434231 27434301 -149539839 - MER3 DNA MER1_type 0 209 133 2001 105 16 56 chrX 27434301 27434449 -149539691 + AluSx SINE Alu 1 132 -180 2373 91 0 7 chrX 27434449 27434747 -149539393 + AluSp SINE Alu 1 296 -17 2001 105 16 56 chrX 27434747 27434902 -149539238 + AluSx SINE Alu 132 292 -20 1009 149 4 115 chrX 27434902 27435066 -149539074 - MER3 DNA MER1_type -76 133 1 981 204 47 50 chrX 27435066 27435332 -149538808 + L1MC5 LINE L1 7329 7597 -364 1099 83 14 7 chrX 27435336 27435481 -149538659 + AluSx SINE Alu 1 146 -166 3755 60 35 106 chrX 27435481 27435637 -149538503 - LTR66 LTR ERVL 0 610 445 459 0 0 0 chrX 27435637 27435688 -149538452 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3755 60 35 106 chrX 27435688 27436013 -149538127 - LTR66 LTR ERVL -165 445 184 2312 78 34 0 chrX 27436013 27436306 -149537834 - AluSc SINE Alu -3 306 4 3755 60 35 106 chrX 27436306 27436473 -149537667 - LTR66 LTR ERVL -426 184 7 2217 112 3 3 chrX 27436475 27436770 -149537370 + AluSq SINE Alu 3 297 -16 1308 101 0 6 chrX 27436794 27436962 -149537178 + AluSx SINE Alu 142 308 -4 845 199 56 53 chrX 27436969 27437195 -149536945 + L1MC5 LINE L1 7603 7832 -129 1986 134 33 3 chrX 27437195 27437494 -149536646 - AluJo SINE Alu -4 308 1 845 199 56 53 chrX 27437494 27437589 -149536551 + L1MC5 LINE L1 7832 7925 -36 1934 139 0 60 chrX 27437597 27437913 -149536227 + AluJb SINE Alu 1 297 -15 2263 111 3 3 chrX 27438103 27438409 -149535731 + AluSx SINE Alu 1 306 -6 183 293 93 13 chrX 27438465 27438540 -149535600 + L3 LINE CR1 1092 1172 -405 1044 269 51 20 chrX 27438759 27439150 -149534990 + LTR16A1 LTR ERVL 55 457 0 2166 84 32 29 chrX 27439505 27439813 -149534327 - AluSc SINE Alu 0 309 1 2341 78 7 10 chrX 27439818 27440113 -149534027 - AluSq SINE Alu -19 294 1 308 136 0 0 chrX 27440121 27440165 -149533975 + AluS SINE Alu 14 57 -246 268 254 56 8 chrX 27440389 27440515 -149533625 + AluSc SINE Alu 137 268 -31 1110 169 10 19 chrX 27440581 27440788 -149533352 + AluJb SINE Alu 84 288 -24 585 263 149 19 chrX 27440794 27440987 -149533153 + HERVL LTR ERVL 2951 3188 -2466 2425 91 10 0 chrX 27440987 27441294 -149532846 + AluSx SINE Alu 1 310 -2 585 263 149 19 chrX 27441294 27441362 -149532778 + HERVL LTR ERVL 3188 3246 -2408 255 291 35 0 chrX 27441631 27441717 -149532423 + AluYb8 SINE Alu 119 207 -101 2622 55 3 3 chrX 27441743 27442050 -149532090 + AluSp SINE Alu 2 308 -5 204 125 0 0 chrX 27442057 27442089 -149532051 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2035 135 13 13 chrX 27442097 27442409 -149531731 + AluJo SINE Alu 1 312 0 2298 113 3 0 chrX 27442434 27442736 -149531404 + AluSx SINE Alu 1 303 -9 2364 136 66 11 chrX 27443376 27443818 -149530322 + L1MC1 LINE L1 5868 6333 0 277 139 47 12 chrX 27444744 27444830 -149529310 + CT-rich Low_complexity Low_complexity 2 90 0 23 0 0 0 chrX 27445033 27445056 -149529084 + GC_rich Low_complexity Low_complexity 1 23 0 2564 40 17 0 chrX 27445875 27446171 -149527969 + AluY SINE Alu 1 301 -10 804 107 0 0 chrX 27446395 27446498 -149527642 + AluJb SINE Alu 1 103 -209 240 86 0 0 chrX 27446500 27446535 -149527605 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 1989 105 30 17 chrX 27446535 27446830 -149527310 + AluSx SINE Alu 2 300 -12 2410 73 7 7 chrX 27447204 27447506 -149526634 + AluSp SINE Alu 1 302 -11 1138 101 7 0 chrX 27448124 27448273 -149525867 - AluSg/x SINE Alu -22 290 141 443 139 0 13 chrX 27448275 27448354 -149525786 - AluJ/FLAM SINE Alu -233 79 2 259 278 41 41 chrX 27448361 27448458 -149525682 - MIR SINE MIR -51 211 115 1131 49 7 7 chrX 27448728 27448871 -149525269 - AluY SINE Alu -168 143 1 2046 201 165 14 chrX 27449470 27450118 -149524022 + MER20B DNA MER1_type 27 772 -11 253 231 0 0 chrX 27450133 27450185 -149523955 - MIR SINE MIR -118 144 93 23 33 0 0 chrX 27450865 27450895 -149523245 + GC_rich Low_complexity Low_complexity 1 30 0 266 186 29 29 chrX 27451042 27451144 -149522996 + C-rich Low_complexity Low_complexity 1 102 0 201 162 0 0 chrX 27451372 27451409 -149522731 + A-rich Low_complexity Low_complexity 1 37 0 1363 126 138 27 chrX 27453847 27454108 -149520032 + AluSg1 SINE Alu 14 303 -6 965 88 7 0 chrX 27454988 27455124 -149519016 - AluSp/q SINE Alu -10 303 167 35 0 0 0 chrX 27456345 27456380 -149517760 + AT_rich Low_complexity Low_complexity 1 35 0 2149 93 17 3 chrX 27457254 27457555 -149516585 - AluSx SINE Alu -7 305 1 2073 91 7 10 chrX 27458333 27458630 -149515510 - AluSp SINE Alu -17 296 1 579 298 49 10 chrX 27460724 27460929 -149513211 - MER58A DNA MER1_type -10 214 2 1066 103 22 16 chrX 27461773 27461958 -149512182 - AluSp SINE Alu -2 311 126 1983 140 0 13 chrX 27462886 27463201 -149510939 - 7SLRNA srpRNA srpRNA -9 311 1 586 158 241 23 chrX 27463245 27463378 -149510762 + FAM SINE Alu 1 162 -13 246 313 0 0 chrX 27464679 27464762 -149509378 + (CAG)n Simple_repeat Simple_repeat 2 84 0 533 162 9 48 chrX 27467987 27468092 -149506048 + FLAM_A SINE Alu 21 121 -21 630 156 156 19 chrX 27469310 27469470 -149504670 + L1ME4a LINE L1 5624 5805 -373 218 255 36 120 chrX 27469981 27470173 -149503967 - MER5B DNA MER1_type -2 176 1 2043 83 7 50 chrX 27470495 27470795 -149503345 + AluY SINE Alu 1 287 -24 1655 134 73 11 chrX 27470829 27471104 -149503036 + AluSg SINE Alu 1 292 -18 255 61 0 0 chrX 27471117 27471150 -149502990 + (CA)n Simple_repeat Simple_repeat 2 34 0 317 298 210 11 chrX 27471173 27471354 -149502786 + L1ME4a LINE L1 5840 6056 -65 4245 173 80 62 chrX 27471400 27471666 -149502474 - L1MD2 LINE L1 -34 6325 6065 1549 144 86 11 chrX 27471666 27471944 -149502196 - AluJb SINE Alu -13 299 1 4245 173 80 62 chrX 27471944 27472143 -149501997 - L1MD2 LINE L1 -294 6065 5871 2030 85 44 0 chrX 27472143 27472441 -149501699 - AluSx SINE Alu 0 310 1 4245 173 80 62 chrX 27472441 27472800 -149501340 - L1MD2 LINE L1 -488 5871 5520 1621 152 0 53 chrX 27472800 27473103 -149501037 - AluJb SINE Alu -24 288 2 4245 173 80 62 chrX 27473103 27473455 -149500685 - L1MD2 LINE L1 -839 5520 5133 2127 107 0 23 chrX 27473457 27473766 -149500374 - AluSx SINE Alu -10 302 1 1986 103 48 0 chrX 27473770 27473946 -149500194 - AluSc SINE Alu -3 306 109 180 0 0 0 chrX 27473946 27473966 -149500174 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 1986 103 48 0 chrX 27473966 27474081 -149500059 - AluSc SINE Alu -200 109 1 1342 236 5 43 chrX 27474082 27474245 -149499895 - L1MD2 LINE L1 -1229 4917 4749 2208 108 3 0 chrX 27474245 27474551 -149499589 - AluSx SINE Alu -5 307 1 1342 236 5 43 chrX 27474551 27474785 -149499355 - L1MD2 LINE L1 -1397 4749 4535 1345 135 0 28 chrX 27474838 27475053 -149499087 - AluJo SINE Alu -103 209 1 2309 77 10 3 chrX 27475383 27475694 -149498446 - AluSp SINE Alu 0 313 1 2115 106 13 0 chrX 27476072 27476373 -149497767 - AluSq SINE Alu -8 305 1 2013 108 35 0 chrX 27476642 27476928 -149497212 + AluSx SINE Alu 1 296 -16 2029 40 44 74 chrX 27477009 27477305 -149496835 + AluY SINE Alu 1 287 -24 201 39 0 0 chrX 27477315 27477341 -149496799 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1737 65 0 0 chrX 27477413 27477627 -149496513 + AluSx SINE Alu 1 214 -98 1101 91 32 0 chrX 27477731 27477885 -149496255 + AluSg/x SINE Alu 140 298 -14 928 133 26 0 chrX 27478026 27478177 -149495963 + MER68 LTR ERV1 1 155 -407 1734 138 27 10 chrX 27478177 27478474 -149495666 - AluJo SINE Alu -10 302 1 2198 93 3 3 chrX 27478688 27478999 -149495141 + AluY SINE Alu 1 311 0 374 131 34 91 chrX 27479141 27479317 -149494823 + T-rich Low_complexity Low_complexity 4 169 0 1430 121 8 24 chrX 27479396 27479645 -149494495 + AluY SINE Alu 59 303 -8 986 167 0 0 chrX 27479648 27479804 -149494336 + AluJo/FRAM SINE Alu 137 292 -10 38 0 0 0 chrX 27479804 27479842 -149494298 + AT_rich Low_complexity Low_complexity 1 38 0 2086 86 31 3 chrX 27480306 27480596 -149493544 - AluSp SINE Alu -15 298 1 321 233 150 38 chrX 27480657 27480790 -149493350 - MIR SINE MIR -48 214 67 211 71 48 0 chrX 27480790 27480832 -149493308 + (TA)n Simple_repeat Simple_repeat 2 45 0 2090 99 25 0 chrX 27481192 27481476 -149492664 - AluSx SINE Alu -21 291 1 1997 106 0 70 chrX 27481835 27482166 -149491974 + AluSq SINE Alu 1 308 -5 934 95 0 0 chrX 27482492 27482618 -149491522 - AluSg1 SINE Alu -183 126 1 1703 164 3 13 chrX 27482652 27482950 -149491190 - AluJb SINE Alu -16 296 2 1999 130 13 0 chrX 27482958 27483257 -149490883 - AluSq SINE Alu -10 303 1 1717 275 131 15 chrX 27483387 27483922 -149490218 + MER115 DNA AcHobo 97 693 0 520 209 39 65 chrX 27484123 27484276 -149489864 - MIR3 SINE MIR -45 163 15 809 190 7 0 chrX 27485483 27485625 -149488515 - AluJb SINE Alu -33 279 137 253 275 214 42 chrX 27485643 27485813 -149488327 + L2 LINE L2 1712 1851 -1463 2174 106 0 3 chrX 27485813 27486115 -149488025 + AluSc SINE Alu 1 301 -8 253 275 214 42 chrX 27486115 27486275 -149487865 + L2 LINE L2 1851 2099 -1215 342 126 5 0 chrX 27486309 27486373 -149487767 - Alu SINE Alu -256 44 1 439 276 110 76 chrX 27486474 27486666 -149487474 + L2 LINE L2 2379 2584 -730 2335 92 0 0 chrX 27486666 27486971 -149487169 - AluSq SINE Alu -8 305 1 439 276 110 76 chrX 27486971 27487042 -149487098 + L2 LINE L2 2584 2651 -663 307 265 205 51 chrX 27487020 27487235 -149486905 + L2 LINE L2 2811 3058 -214 * 2053 126 3 0 chrX 27487723 27488017 -149486123 + AluSx SINE Alu 1 295 -17 2367 77 3 0 chrX 27488081 27488391 -149485749 + AluSp SINE Alu 1 311 -2 282 200 111 33 chrX 27488613 27488703 -149485437 + MLT1L LTR MaLR 30 126 -489 601 90 0 0 chrX 27489119 27489197 -149484943 + AluJ/FLAM SINE Alu 2 79 -233 460 234 95 0 chrX 27489201 27489338 -149484802 + L1MC5 LINE L1 7741 7890 -71 2150 100 0 19 chrX 27489398 27489708 -149484432 - AluSx SINE Alu -8 304 1 1918 147 0 0 chrX 27489708 27490015 -149484125 - AluJo SINE Alu -5 307 1 411 312 37 62 chrX 27490209 27490533 -149483607 + L2 LINE L2 2434 2749 -565 2194 95 3 0 chrX 27490578 27490873 -149483267 - AluSx SINE Alu -16 296 1 1687 141 0 49 chrX 27490881 27491186 -149482954 - AluJo SINE Alu -22 290 1 232 224 26 129 chrX 27491223 27491289 -149482851 - L1ME3A LINE L1 -97 6073 6022 2130 116 0 0 chrX 27491289 27491590 -149482550 + AluSx SINE Alu 1 301 -11 232 224 26 129 chrX 27491590 27491639 -149482501 - L1ME3A LINE L1 -148 6022 5970 392 193 62 90 chrX 27491703 27491744 -149482396 - L1M3 LINE L1 -343 5819 5778 2151 88 0 0 chrX 27491744 27492055 -149482085 - AluSx SINE Alu 0 311 1 392 193 62 90 chrX 27492055 27492157 -149481983 - L1M3 LINE L1 -384 5778 5684 312 174 92 31 chrX 27492150 27492248 -149481892 - L1MC5 LINE L1 -45 7916 7813 * 269 376 6 30 chrX 27492256 27492421 -149481719 - MER5B DNA MER1_type -17 161 1 1973 93 0 63 chrX 27492508 27492852 -149481288 - AluSx SINE Alu 0 325 1 709 169 22 37 chrX 27492854 27492990 -149481150 - FLAM_C SINE Alu -8 135 2 243 245 112 20 chrX 27493007 27493105 -149481035 + L2 LINE L2 2847 2953 -319 2293 103 0 0 chrX 27493107 27493418 -149480722 - AluSx SINE Alu -1 311 1 3123 204 75 33 chrX 27493550 27494096 -149480044 - L1ME1 LINE L1 0 6560 6038 2325 106 0 0 chrX 27494096 27494398 -149479742 - AluSx SINE Alu -10 302 1 3123 204 75 33 chrX 27494398 27494790 -149479350 - L1ME1 LINE L1 -522 6038 5578 1856 150 10 7 chrX 27494790 27495090 -149479050 - AluJo SINE Alu -11 301 1 3123 204 75 33 chrX 27495090 27495194 -149478946 - L1ME1 LINE L1 -982 5578 5480 2045 149 7 0 chrX 27495194 27495495 -149478645 - AluJb SINE Alu -9 303 1 1075 221 59 18 chrX 27495499 27495838 -149478302 - L1ME1 LINE L1 -2640 3900 3548 2412 99 3 6 chrX 27495843 27496157 -149477983 - AluSq SINE Alu 0 313 1 1314 116 0 0 chrX 27496166 27496388 -149477752 + AluSg/x SINE Alu 118 310 0 2408 235 34 24 chrX 27496388 27496641 -149477499 + L1M4 LINE L1 2354 2603 -3543 2330 92 0 16 chrX 27496641 27496947 -149477193 + AluSg SINE Alu 1 301 -9 2408 235 34 24 chrX 27496947 27497365 -149476775 + L1M4 LINE L1 2603 3035 -3111 2362 88 0 19 chrX 27497365 27497682 -149476458 + AluSq SINE Alu 2 312 -1 1010 217 26 15 chrX 27497682 27497949 -149476191 - L1ME1 LINE L1 -4425 2115 1846 2153 115 0 14 chrX 27497971 27498286 -149475854 + AluSx SINE Alu 1 311 0 247 269 0 64 chrX 27498287 27498365 -149475775 - L2 LINE L2 -18 3295 3223 1984 162 0 10 chrX 27498506 27498834 -149475306 - AluJo SINE Alu 0 312 1 1756 174 31 62 chrX 27498865 27499249 -149474891 + MLT1A2 LTR MaLR 3 374 0 2416 88 0 0 chrX 27499837 27500134 -149474006 - AluSx SINE Alu -15 297 1 973 120 0 0 chrX 27500403 27500536 -149473604 - AluJb SINE Alu -179 133 1 2444 115 0 0 chrX 27500544 27500856 -149473284 - AluSx SINE Alu 0 312 1 2427 85 0 0 chrX 27501456 27501749 -149472391 - AluSg SINE Alu -17 293 1 2471 88 0 0 chrX 27501932 27502228 -149471912 + AluSg SINE Alu 1 296 -14 184 293 65 49 chrX 27502721 27502844 -149471296 + L3b LINE CR1 1318 1442 -141 2216 131 0 6 chrX 27502845 27503159 -149470981 - AluSx SINE Alu 0 312 1 1314 220 75 13 chrX 27503268 27503641 -149470499 + L1ME3A LINE L1 5587 5982 -188 192 97 0 0 chrX 27503654 27503685 -149470455 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2145 117 0 4 chrX 27503688 27503969 -149470171 - AluSg SINE Alu -30 280 1 487 256 31 25 chrX 27504078 27504238 -149469902 - L1ME3 LINE L1 -4 6158 6000 2072 109 11 18 chrX 27504526 27504704 -149469436 - AluSx SINE Alu 0 314 137 2465 70 3 0 chrX 27504704 27505002 -149469138 - AluY SINE Alu -12 299 1 2072 109 11 18 chrX 27505002 27505139 -149469001 - AluSx SINE Alu -177 137 1 2425 91 3 0 chrX 27505609 27505918 -149468222 - AluSp SINE Alu -3 310 1 2261 86 10 3 chrX 27505919 27506209 -149467931 - AluSg SINE Alu -18 292 1 2604 37 3 0 chrX 27506675 27506975 -149467165 + AluY SINE Alu 1 301 -10 2270 99 10 0 chrX 27506978 27507280 -149466860 + AluSq SINE Alu 1 305 -8 222 62 0 0 chrX 27507979 27508011 -149466129 + (A)n Simple_repeat Simple_repeat 1 32 0 2340 72 0 17 chrX 27508425 27508716 -149465424 - AluSx SINE Alu -19 293 8 243 0 0 0 chrX 27508718 27508745 -149465395 + (T)n Simple_repeat Simple_repeat 1 27 0 384 196 78 10 chrX 27509108 27509210 -149464930 + L1MB8 LINE L1 5468 5576 -602 1159 22 0 29 chrX 27509211 27509348 -149464792 + SVA Other Other 1254 1386 0 506 137 12 2 chrX 27509348 27509444 -149464696 + L1MB8 LINE L1 5574 5669 -514 1852 122 10 59 chrX 27509449 27509753 -149464387 + AluSx SINE Alu 12 300 -12 1322 159 92 131 chrX 27509756 27509906 -149464234 - MER4C LTR ERV1 -17 448 294 1883 144 0 11 chrX 27509906 27510041 -149464099 + AluJb SINE Alu 1 136 -196 2292 101 7 0 chrX 27510041 27510339 -149463801 + AluSg SINE Alu 1 300 -10 1883 144 0 11 chrX 27510339 27510538 -149463602 + AluJb SINE Alu 136 332 0 2073 136 0 13 chrX 27510546 27510873 -149463267 + AluSx SINE Alu 1 323 0 1322 159 92 131 chrX 27510873 27511175 -149462965 - MER4C LTR ERV1 -178 287 2 617 147 54 0 chrX 27511176 27511305 -149462835 + L1MB8 LINE L1 5638 5773 -405 878 127 6 53 chrX 27511313 27511489 -149462651 + LTR23 LTR ERV1 59 242 -195 1950 109 0 91 chrX 27511489 27511818 -149462322 + AluSx SINE Alu 1 299 -13 878 127 6 53 chrX 27511818 27511960 -149462180 + LTR23 LTR ERV1 242 437 0 818 179 21 26 chrX 27511960 27512150 -149461990 + L1MB8 LINE L1 5749 5937 -241 1244 120 0 11 chrX 27512150 27512333 -149461807 + AluSg/x SINE Alu 132 312 0 185 399 44 6 chrX 27512404 27512562 -149461578 - L2 LINE L2 -608 2706 2543 2466 183 83 26 chrX 27512604 27512877 -149461263 - LTR39 LTR ERV1 -2 781 525 2493 80 0 3 chrX 27512877 27513190 -149460950 - AluSx SINE Alu 0 312 1 2466 183 83 26 chrX 27513190 27513456 -149460684 - LTR39 LTR ERV1 -258 525 211 929 184 0 0 chrX 27513483 27513646 -149460494 - AluJb SINE Alu -2 310 148 289 333 20 0 chrX 27513648 27513750 -149460390 + MIR SINE MIR 105 208 -54 4201 62 5 58 chrX 27514667 27514812 -149459328 + MER41A LTR ERV1 1 152 -402 2284 110 0 3 chrX 27514812 27515122 -149459018 + AluSc SINE Alu 1 309 0 4201 62 5 58 chrX 27515122 27515486 -149458654 + MER41A LTR ERV1 152 478 -76 2462 77 7 0 chrX 27515486 27515783 -149458357 - AluSg SINE Alu -10 300 2 4201 62 5 58 chrX 27515783 27515857 -149458283 + MER41A LTR ERV1 478 554 0 333 68 0 0 chrX 27516916 27516960 -149457180 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2165 86 45 3 chrX 27517035 27517326 -149456814 + AluSx SINE Alu 1 303 -9 1336 99 0 76 chrX 27517350 27517561 -149456579 + AluJo SINE Alu 116 310 -2 1472 116 0 5 chrX 27517779 27517977 -149456163 - AluSx SINE Alu -115 197 1 1039 162 0 20 chrX 27517978 27518176 -149455964 + L1MB3 LINE L1 5819 6012 -171 1172 140 0 11 chrX 27518179 27518225 -149455915 - AluSp SINE Alu -134 179 134 2438 78 0 3 chrX 27518225 27518521 -149455619 - AluSx SINE Alu -17 295 1 1172 140 0 11 chrX 27518521 27518653 -149455487 - AluSp SINE Alu -179 134 3 900 211 30 17 chrX 27518653 27518885 -149455255 + LTR16C LTR ERVL 257 491 0 1895 160 7 10 chrX 27519255 27519543 -149454597 - AluSx SINE Alu -25 287 1 1399 147 9 5 chrX 27519553 27519771 -149454369 - AluJb SINE Alu -9 303 85 2298 104 0 0 chrX 27519786 27520085 -149454055 - AluSx SINE Alu -13 299 1 207 0 0 0 chrX 27520137 27520160 -149453980 + (CAA)n Simple_repeat Simple_repeat 2 24 0 234 172 0 65 chrX 27520400 27520479 -149453661 + CT-rich Low_complexity Low_complexity 3 77 -12 1930 172 0 0 chrX 27520479 27520770 -149453370 - AluJb SINE Alu -21 291 1 234 172 0 65 chrX 27520770 27520783 -149453357 + CT-rich Low_complexity Low_complexity 77 89 0 2254 112 10 0 chrX 27520801 27521106 -149453034 + AluSx SINE Alu 1 308 -4 2264 94 0 3 chrX 27521494 27521802 -149452338 - AluSx SINE Alu 0 308 2 350 224 37 161 chrX 27521812 27521942 -149452198 - L1MC/D LINE L1 -2211 5597 5453 2605 201 51 34 chrX 27521942 27522136 -149452004 - MLT1E3 LTR MaLR -3 621 432 1876 153 32 23 chrX 27522136 27522168 -149451972 - AluSx SINE Alu -1 311 281 297 0 0 0 chrX 27522168 27522201 -149451939 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1876 153 32 23 chrX 27522201 27522476 -149451664 - AluSx SINE Alu -31 281 1 2605 201 51 34 chrX 27522476 27522892 -149451248 - MLT1E3 LTR MaLR -192 432 1 350 224 37 161 chrX 27522892 27522946 -149451194 - L1MC/D LINE L1 -2355 5453 5394 2291 112 0 3 chrX 27522946 27523251 -149450889 - AluSq SINE Alu -9 304 1 350 224 37 161 chrX 27523251 27523371 -149450769 - L1MC/D LINE L1 -2414 5394 5337 1717 146 73 0 chrX 27523371 27523646 -149450494 - AluJo SINE Alu -14 298 4 350 224 37 161 chrX 27523646 27523687 -149450453 - L1MC/D LINE L1 -2471 5337 5293 2244 100 0 0 chrX 27523720 27524001 -149450139 + AluSq SINE Alu 1 281 -32 207 0 0 0 chrX 27524002 27524025 -149450115 + (TC)n Simple_repeat Simple_repeat 1 23 0 1193 115 23 17 chrX 27524037 27524211 -149449929 + AluSg/x SINE Alu 127 301 -11 2234 115 17 0 chrX 27524378 27524674 -149449466 - AluSx SINE Alu -11 301 1 2177 95 28 0 chrX 27524702 27524985 -149449155 + AluSx SINE Alu 1 291 -21 211 71 48 0 chrX 27525345 27525387 -149448753 + (TA)n Simple_repeat Simple_repeat 2 45 0 316 233 150 38 chrX 27525387 27525520 -149448620 + MIR SINE MIR 67 214 -48 2223 89 31 3 chrX 27525581 27525873 -149448267 + AluSp SINE Alu 1 300 -13 38 0 0 0 chrX 27526337 27526375 -149447765 + AT_rich Low_complexity Low_complexity 1 38 0 2142 99 0 40 chrX 27526375 27526534 -149447606 - AluY SINE Alu -20 291 148 2588 51 0 19 chrX 27526534 27526845 -149447295 - AluY SINE Alu -6 305 1 2142 99 0 40 chrX 27526845 27526988 -149447152 - AluY SINE Alu -163 148 1 6887 78 15 5 chrX 27526990 27528137 -149446003 - L1PA10 LINE L1 -10 6158 5003 1973 117 36 4 chrX 27528209 27528520 -149445620 - AluSx SINE Alu 0 320 1 1681 151 0 82 chrX 27528755 27528913 -149445227 - AluJo SINE Alu -21 291 170 2201 124 0 3 chrX 27528913 27529211 -149444929 - AluSx SINE Alu -15 297 1 1681 151 0 82 chrX 27529211 27529369 -149444771 - AluJo SINE Alu -142 170 1 586 293 17 6 chrX 27530764 27530945 -149443195 - MIR SINE MIR -1 261 79 2402 79 16 7 chrX 27531177 27531482 -149442658 - AluSx SINE Alu -4 308 1 1893 126 66 140 chrX 27531768 27531810 -149442330 - MLT1D LTR MaLR 0 505 461 2406 82 3 3 chrX 27531810 27532113 -149442027 + AluSx SINE Alu 1 303 -9 1893 126 66 140 chrX 27532113 27532143 -149441997 - MLT1D LTR MaLR -44 461 430 852 181 0 0 chrX 27532143 27532276 -149441864 + FLAM_C SINE Alu 1 133 0 1893 126 66 140 chrX 27532276 27532702 -149441438 - MLT1D LTR MaLR -75 430 43 2510 260 54 19 chrX 27533446 27534039 -149440101 + Zaphod DNA AcHobo 1 629 -3402 327 25 0 0 chrX 27534039 27534079 -149440061 + (CA)n Simple_repeat Simple_repeat 2 41 0 2510 260 54 19 chrX 27534079 27534267 -149439873 + Zaphod DNA AcHobo 629 809 -3222 240 35 0 0 chrX 27534366 27534395 -149439745 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 1827 125 3 35 chrX 27534395 27534682 -149439458 - AluSq SINE Alu -35 278 1 422 213 0 0 chrX 27534903 27534983 -149439157 - L2 LINE L2 0 3313 3234 2188 86 0 40 chrX 27535279 27535445 -149438695 - LTR8 LTR ERV1 0 691 543 2447 65 3 0 chrX 27535445 27535737 -149438403 - AluSp SINE Alu -20 293 1 2188 86 0 40 chrX 27535737 27535896 -149438244 - LTR8 LTR ERV1 -148 543 379 1131 68 0 0 chrX 27535893 27536041 -149438099 - LTR8 LTR ERV1 -543 148 1 * 2170 114 37 0 chrX 27536084 27536204 -149437936 + AluSx SINE Alu 1 115 -197 188 0 74 0 chrX 27536204 27536231 -149437909 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2170 114 37 0 chrX 27536231 27536409 -149437731 + AluSx SINE Alu 115 310 -2 2167 114 0 0 chrX 27536444 27536725 -149437415 + AluSx SINE Alu 1 304 0 208 0 0 0 chrX 27536725 27536748 -149437392 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1245 118 45 142 chrX 27537459 27537791 -149436349 - AluSx SINE Alu 0 302 3 2233 77 0 0 chrX 27537795 27538080 -149436060 - AluSp SINE Alu -11 302 18 550 141 190 74 chrX 27538103 27538271 -149435869 + Zaphod DNA AcHobo 551 758 -3273 1783 124 29 0 chrX 27538271 27538581 -149435559 + AluSx SINE Alu 2 319 0 550 141 190 74 chrX 27538581 27538653 -149435487 + Zaphod DNA AcHobo 758 820 -3211 930 151 60 60 chrX 27538653 27538806 -149435334 - L1MB3 LINE L1 -5 6178 6023 1677 171 56 9 chrX 27538806 27539128 -149435012 + MER1B DNA MER1_type 1 337 0 930 151 60 60 chrX 27539128 27539192 -149434948 - L1MB3 LINE L1 -159 6024 5961 2163 102 0 0 chrX 27539211 27539504 -149434636 - AluSg SINE Alu -13 297 5 2429 54 0 0 chrX 27539519 27539816 -149434324 - AluY SINE Alu -14 297 1 1670 165 7 3 chrX 27539840 27540131 -149434009 - AluJb SINE Alu -14 298 7 2202 116 0 0 chrX 27540212 27540522 -149433618 - AluSx SINE Alu -2 310 1 306 126 0 23 chrX 27540528 27540615 -149433525 + Zaphod DNA AcHobo 904 988 -3043 1161 174 143 78 chrX 27540616 27540935 -149433205 + Zaphod DNA AcHobo 3596 3893 -138 2126 108 0 13 chrX 27540935 27541241 -149432899 + AluSx SINE Alu 1 302 -10 2216 75 3 3 chrX 27541248 27541543 -149432597 + AluSq SINE Alu 5 299 -14 2142 46 7 11 chrX 27541544 27541849 -149432291 + AluY SINE Alu 1 304 0 1161 174 143 78 chrX 27541849 27541902 -149432238 + Zaphod DNA AcHobo 3897 4004 -27 746 144 81 23 chrX 27541912 27542086 -149432054 + MER53 DNA DNA 3 186 -3 339 302 78 62 chrX 27542193 27542394 -149431746 - L1ME3A LINE L1 -1 6169 5958 1908 101 61 4 chrX 27542394 27542671 -149431469 - AluSp SINE Alu -19 294 2 339 302 78 62 chrX 27542671 27542856 -149431284 - L1ME3A LINE L1 -212 5958 5777 900 167 0 0 chrX 27542859 27543003 -149431137 - FRAM SINE Alu -20 156 13 352 275 0 3 chrX 27543017 27543116 -149431024 - L1MB3 LINE L1 -384 5786 5689 2078 101 27 3 chrX 27543118 27543416 -149430724 - AluSx SINE Alu -7 305 1 323 284 11 33 chrX 27544419 27544446 -149429694 + L1P5 LINE L1 5254 5280 -876 2181 108 0 3 chrX 27544446 27544753 -149429387 - AluSx SINE Alu -5 307 2 323 284 11 33 chrX 27544753 27544908 -149429232 + L1P5 LINE L1 5280 5432 -724 2087 123 0 3 chrX 27544917 27545219 -149428921 + AluY SINE Alu 1 301 -10 338 169 0 0 chrX 27545224 27545283 -149428857 + L1ME3A LINE L1 5742 5800 -364 1158 238 83 17 chrX 27545354 27545716 -149428424 + L1ME3A LINE L1 5785 6170 0 2329 164 20 69 chrX 27546303 27546663 -149427477 + Charlie1b DNA MER1_type 1 377 -2384 1717 143 0 21 chrX 27546663 27546976 -149427164 - AluJo SINE Alu 0 308 2 2329 164 20 69 chrX 27546976 27547016 -149427124 + Charlie1b DNA MER1_type 377 417 -2344 2072 104 6 28 chrX 27547016 27547333 -149426807 - AluSx SINE Alu -2 310 1 2329 164 20 69 chrX 27547333 27547480 -149426660 + Charlie1b DNA MER1_type 417 523 0 801 222 27 69 chrX 27547500 27547652 -149426488 - L1MD3 LINE L1 -16 7979 7841 2242 94 0 0 chrX 27547652 27547949 -149426191 - AluSx SINE Alu -15 297 1 801 222 27 69 chrX 27547949 27548057 -149426083 - L1MD3 LINE L1 -154 7841 7730 1104 58 0 0 chrX 27548199 27548338 -149425802 + Tigger2 DNA MER2_type 2391 2529 -189 2342 70 0 0 chrX 27548348 27548647 -149425493 + AluY SINE Alu 1 299 -12 792 165 8 0 chrX 27548663 27548790 -149425350 + FLAM_C SINE Alu 6 133 -10 883 211 113 153 chrX 27548797 27549024 -149425116 + L1MC5 LINE L1 6906 7141 -820 2033 97 0 31 chrX 27549024 27549336 -149424804 - AluSg SINE Alu 0 306 4 1708 163 3 7 chrX 27549338 27549627 -149424513 - AluJo SINE Alu -23 289 2 2100 102 17 0 chrX 27549633 27549928 -149424212 - AluSx SINE Alu -12 300 1 883 211 113 153 chrX 27549928 27550045 -149424095 + L1MC5 LINE L1 7147 7267 -694 652 176 67 0 chrX 27550045 27550164 -149423976 - FLAM_A SINE Alu -6 127 1 883 211 113 153 chrX 27550164 27550299 -149423841 + L1MC5 LINE L1 7267 7406 -555 2345 80 3 0 chrX 27550299 27550601 -149423539 + AluSp SINE Alu 1 303 -10 883 211 113 153 chrX 27550601 27550677 -149423463 + L1MC5 LINE L1 7406 7483 -478 2233 92 6 13 chrX 27550677 27550992 -149423148 + AluSq SINE Alu 1 313 0 883 211 113 153 chrX 27550992 27551273 -149422867 + L1MC5 LINE L1 7483 7708 -253 10577 22 0 0 chrX 27551273 27553256 -149420884 - L1PA3 LINE L1 -3 6152 4170 883 211 113 153 chrX 27553256 27553458 -149420682 + L1MC5 LINE L1 7708 7917 -44 2154 80 4 0 chrX 27553482 27553756 -149420384 + AluSp SINE Alu 1 275 -38 1676 122 0 99 chrX 27555348 27555578 -149418562 - AluJo SINE Alu -1 311 125 2057 131 0 0 chrX 27555578 27555883 -149418257 + AluSx SINE Alu 1 305 -7 1676 122 0 99 chrX 27555883 27555997 -149418143 - AluJo SINE Alu -187 125 1 1587 104 49 139 chrX 27556205 27556410 -149417730 - Charlie1b DNA MER1_type -2239 522 300 1975 133 0 31 chrX 27556410 27556727 -149417413 - AluSx SINE Alu -5 307 1 1587 104 49 139 chrX 27556727 27556997 -149417143 - Charlie1b DNA MER1_type -2461 300 78 854 131 0 0 chrX 27556999 27557121 -149417019 + FLAM_C SINE Alu 1 122 -11 227 114 23 0 chrX 27557121 27557165 -149416975 + (TA)n Simple_repeat Simple_repeat 2 46 0 329 258 0 0 chrX 27557166 27557255 -149416885 + L1MC4 LINE L1 6615 6703 -1339 427 256 12 0 chrX 27557260 27557346 -149416794 - Charlie1b DNA MER1_type -435 88 2 737 249 136 89 chrX 27557381 27557875 -149416265 - MLT1L LTR MaLR -91 524 8 2248 91 7 0 chrX 27558066 27558363 -149415777 - AluSp SINE Alu -14 299 1 1845 124 18 3 chrX 27558724 27559007 -149415133 - AluSq SINE Alu -26 287 1 1915 132 0 13 chrX 27559220 27559545 -149414595 - AluJb SINE Alu 0 312 1 2123 92 0 3 chrX 27559661 27559978 -149414162 + AluSp SINE Alu 1 316 0 1855 88 19 8 chrX 27560049 27560310 -149413830 - L1PA8A LINE L1 -4 6127 5864 1069 177 60 4 chrX 27560329 27560571 -149413569 - LTR54B LTR ERV1 -1 497 242 253 154 0 0 chrX 27560571 27560610 -149413530 - MSTD LTR MaLR 0 457 419 984 180 267 16 chrX 27560610 27560693 -149413447 + MSTC LTR MaLR 1 62 -366 1957 138 0 3 chrX 27560693 27560989 -149413151 + AluSx SINE Alu 1 295 -17 984 180 267 16 chrX 27560989 27561216 -149412924 + MSTC LTR MaLR 62 389 -39 536 133 12 0 chrX 27561217 27561300 -149412840 + AluJ/FLAM SINE Alu 2 85 -227 * 757 115 0 0 chrX 27561292 27561441 -149412699 + AluSp/q SINE Alu 181 329 0 345 137 0 0 chrX 27561460 27561511 -149412629 + MSTC LTR MaLR 407 457 0 812 206 147 71 chrX 27561515 27561753 -149412387 - MSTD LTR MaLR -38 358 103 705 137 62 62 chrX 27561748 27561909 -149412231 - LTR54 LTR ERV1 -349 161 1 * 2101 126 7 0 chrX 27562584 27562894 -149411246 + AluSx SINE Alu 1 312 0 2125 136 0 0 chrX 27562924 27563233 -149410907 + AluSx SINE Alu 1 309 -3 1966 105 0 71 chrX 27563234 27563557 -149410583 - AluSx SINE Alu -12 300 1 696 346 90 17 chrX 27563650 27564118 -149410022 + L1M4 LINE L1 2121 2622 -3524 24 0 0 0 chrX 27564441 27564465 -149409675 + AT_rich Low_complexity Low_complexity 1 24 0 2101 96 20 10 chrX 27564472 27564765 -149409375 + AluSx SINE Alu 5 300 -12 685 203 0 14 chrX 27564765 27564897 -149409243 - L1MB3 LINE L1 -63 6120 5991 253 263 53 0 chrX 27564898 27564974 -149409166 + MLT1K LTR MaLR 509 588 0 343 54 87 0 chrX 27564987 27565079 -149409061 + (TA)n Simple_repeat Simple_repeat 2 101 0 324 281 100 96 chrX 27565083 27565548 -149408592 - L1MEd LINE L1 -4875 1244 802 1977 144 3 0 chrX 27565599 27565898 -149408242 + AluSq SINE Alu 4 303 -10 1798 166 0 13 chrX 27565906 27566220 -149407920 + AluJb SINE Alu 2 311 -1 914 103 0 0 chrX 27566254 27566380 -149407760 + AluSg1 SINE Alu 1 126 -183 391 155 0 28 chrX 27566403 27566474 -149407666 - Tigger2 DNA MER2_type -2649 69 1 535 201 39 71 chrX 27567632 27567786 -149406354 + MIR3 SINE MIR 15 163 -45 1705 277 131 15 chrX 27567987 27568522 -149405618 - MER115 DNA AcHobo 0 693 97 2162 85 0 0 chrX 27568652 27568976 -149405164 + AluSx SINE Alu 1 324 0 927 125 0 0 chrX 27569288 27569424 -149404716 + AluSq SINE Alu 87 222 -91 1970 141 0 10 chrX 27569560 27569864 -149404276 + AluSx SINE Alu 1 301 -11 383 221 111 87 chrX 27570859 27570928 -149403212 - MER5A DNA MER1_type 0 189 123 2237 65 37 7 chrX 27570928 27571222 -149402918 + AluSc SINE Alu 1 303 -6 383 221 111 87 chrX 27571222 27571324 -149402816 - MER5A DNA MER1_type -66 123 14 204 143 0 24 chrX 27571665 27571707 -149402433 + (CTGGGG)n Simple_repeat Simple_repeat 1 41 0 2418 51 0 0 chrX 27572816 27573112 -149401028 - AluY SINE Alu -6 305 10 2120 112 6 6 chrX 27573127 27573439 -149400701 - AluSx SINE Alu 0 312 1 1974 117 20 0 chrX 27574847 27575146 -149398994 - AluSx SINE Alu -3 309 5 233 155 155 0 chrX 27575170 27575228 -149398912 + L1ME1 LINE L1 5406 5472 -702 1149 121 0 0 chrX 27575228 27575393 -149398747 - AluSg/x SINE Alu -15 295 131 1224 149 103 70 chrX 27575410 27575712 -149398428 - AluSx SINE Alu 0 312 1 2454 183 98 75 chrX 27575713 27576102 -149398038 + L1ME1 LINE L1 5458 5836 -498 2012 120 0 0 chrX 27576102 27576393 -149397747 - AluSx SINE Alu -21 291 1 2454 183 98 75 chrX 27576393 27576558 -149397582 + L1ME1 LINE L1 5836 5996 -338 1689 132 8 4 chrX 27576558 27576823 -149397317 - AluJb SINE Alu -17 295 30 2454 183 98 75 chrX 27576823 27576969 -149397171 + L1ME1 LINE L1 5996 6334 0 416 233 59 15 chrX 27577055 27577206 -149396934 - L1ME2 LINE L1 -297 5867 5716 2163 125 0 0 chrX 27578023 27578335 -149395805 - AluSx SINE Alu 0 312 1 1128 203 18 0 chrX 27578335 27578552 -149395588 - L1MB2 LINE L1 -345 5826 5606 850 191 13 6 chrX 27578623 27578780 -149395360 - MER5B DNA MER1_type -3 175 18 2110 100 3 3 chrX 27578900 27579190 -149394950 - AluSg SINE Alu -20 290 1 2004 165 0 0 chrX 27579195 27579486 -149394654 - AluJb SINE Alu -21 291 1 202 222 0 0 chrX 27579617 27579662 -149394478 - MIR SINE MIR -107 155 111 2456 96 0 3 chrX 27579673 27579986 -149394154 - AluSx SINE Alu 0 312 1 1781 118 12 4 chrX 27580635 27580881 -149393259 + AluSx SINE Alu 1 248 -64 752 286 173 30 chrX 27580966 27581435 -149392705 - LTR67 LTR ERVL -2 555 20 2220 130 16 50 chrX 27581439 27581605 -149392535 + MLT1A1 LTR MaLR 1 171 -194 2379 83 7 3 chrX 27581605 27581906 -149392234 + AluSq SINE Alu 1 302 -11 2220 130 16 50 chrX 27581906 27582117 -149392023 + MLT1A1 LTR MaLR 171 365 0 205 359 0 58 chrX 27582421 27582470 -149391670 - MIR3 SINE MIR -10 198 157 1904 185 109 0 chrX 27582470 27582827 -149391313 - MSTD LTR MaLR 0 396 1 205 359 0 58 chrX 27582827 27582880 -149391260 - MIR3 SINE MIR -51 157 102 303 323 97 26 chrX 27582926 27583049 -149391091 + MIR SINE MIR 94 232 -30 2243 101 0 24 chrX 27583049 27583346 -149390794 - AluSx SINE Alu -22 290 1 303 323 97 26 chrX 27583346 27583377 -149390763 + MIR SINE MIR 232 259 -3 2269 87 0 11 chrX 27583377 27583686 -149390454 + AluSx SINE Alu 1 306 0 2455 106 0 0 chrX 27583916 27584228 -149389912 + AluSx SINE Alu 1 312 0 1996 183 117 16 chrX 27584237 27584740 -149389400 - L1ME2 LINE L1 -249 5915 5351 2260 113 3 10 chrX 27584740 27585050 -149389090 - AluSq SINE Alu -5 308 1 1996 183 117 16 chrX 27585050 27585092 -149389048 - L1ME2 LINE L1 -813 5351 5315 24 0 0 0 chrX 27585092 27585116 -149389024 + AT_rich Low_complexity Low_complexity 1 24 0 777 163 54 134 chrX 27585206 27585568 -149388572 - L1ME1 LINE L1 -21 6226 5877 5508 80 16 12 chrX 27585601 27585962 -149388178 - L1PB1 LINE L1 -1 6150 5792 207 0 0 0 chrX 27585962 27585985 -149388155 + (TA)n Simple_repeat Simple_repeat 2 24 0 5508 80 16 12 chrX 27585985 27586375 -149387765 - L1PB1 LINE L1 -359 5792 5393 2509 82 0 0 chrX 27586375 27586679 -149387461 - AluSg SINE Alu -6 304 1 5508 80 16 12 chrX 27586679 27586734 -149387406 - L1PB1 LINE L1 -758 5393 5340 1362 188 110 0 chrX 27586732 27587041 -149387099 - L1ME1 LINE L1 -337 5898 5556 * 746 216 17 11 chrX 27587043 27587219 -149386921 - MLT1A1 LTR MaLR 0 365 189 1629 188 50 35 chrX 27587220 27587763 -149386377 - L1ME1 LINE L1 -682 5553 5014 680 248 51 9 chrX 27587767 27587981 -149386159 - L1ME1 LINE L1 -4333 2063 1841 2445 70 0 7 chrX 27588002 27588300 -149385840 - AluSc SINE Alu -13 296 1 1115 68 7 20 chrX 27588302 27588449 -149385691 - AluSq/x SINE Alu -167 145 1 803 236 28 31 chrX 27588454 27588708 -149385432 - L1ME1 LINE L1 -4576 1820 1568 691 156 13 27 chrX 27588709 27588725 -149385415 - MLT1A1 LTR MaLR -222 152 137 1935 160 24 0 chrX 27588725 27589018 -149385122 - AluJb SINE Alu -12 300 1 691 156 13 27 chrX 27589018 27589154 -149384986 - MLT1A1 LTR MaLR -237 137 2 249 33 0 0 chrX 27589246 27589276 -149384864 + (TG)n Simple_repeat Simple_repeat 2 31 0 785 267 72 74 chrX 27589299 27590053 -149384087 - L1ME1 LINE L1 -5052 1344 593 1797 127 58 34 chrX 27590111 27590402 -149383738 - AluSx SINE Alu -14 298 1 399 304 58 88 chrX 27590415 27590727 -149383413 - L1ME1 LINE L1 -5552 653 333 1800 150 37 17 chrX 27590727 27591027 -149383113 + AluJb SINE Alu 1 306 -6 399 304 58 88 chrX 27591027 27591141 -149382999 - L1ME1 LINE L1 -5872 333 217 1672 88 0 44 chrX 27591141 27591368 -149382772 - AluSq SINE Alu -15 298 82 2349 98 0 25 chrX 27591368 27591683 -149382457 - AluSq SINE Alu -5 308 1 399 304 58 88 chrX 27591683 27591768 -149382372 - L1ME1 LINE L1 -5986 219 155 22 35 0 0 chrX 27591790 27591819 -149382321 + AT_rich Low_complexity Low_complexity 1 29 0 181 0 0 65 chrX 27591919 27591950 -149382190 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2225 100 0 0 chrX 27591952 27592231 -149381909 - AluSx SINE Alu -31 281 3 2033 144 0 13 chrX 27592239 27592538 -149381602 - AluJo SINE Alu -17 295 1 2301 104 7 0 chrX 27592870 27593169 -149380971 - AluSx SINE Alu -11 301 1 225 268 14 28 chrX 27593217 27593288 -149380852 - L2 LINE L2 -2 3270 3201 2485 90 0 0 chrX 27594127 27594426 -149379714 - AluSx SINE Alu -13 299 1 1445 176 46 3 chrX 27594833 27594991 -149379149 - MER33 DNA MER1_type -2270 315 165 2395 86 3 7 chrX 27594991 27595293 -149378847 + AluSx SINE Alu 1 301 -11 1445 176 46 3 chrX 27595293 27595436 -149378704 - MER33 DNA MER1_type -2420 165 1 4240 59 10 29 chrX 27595516 27595690 -149378450 - PABL_A LTR ERV1 0 660 484 2211 110 0 23 chrX 27595690 27595991 -149378149 - AluSq SINE Alu -19 294 1 4240 59 10 29 chrX 27595991 27596395 -149377745 - PABL_A LTR ERV1 -176 484 93 24 32 0 0 chrX 27596397 27596428 -149377712 + AT_rich Low_complexity Low_complexity 1 31 0 2188 88 3 0 chrX 27597370 27597677 -149376463 - AluSx SINE Alu 0 308 1 655 71 0 0 chrX 27597677 27597762 -149376378 - PABL_A LTR ERV1 -575 85 1 183 80 0 0 chrX 27599764 27599789 -149374351 + (TCCCC)n Simple_repeat Simple_repeat 1 25 0 519 149 0 74 chrX 27600170 27600291 -149373849 + MER103 DNA DNA 8 119 -47 2426 90 0 0 chrX 27601004 27601303 -149372837 + AluSg SINE Alu 1 299 -11 2445 68 3 0 chrX 27601336 27601630 -149372510 - AluSp SINE Alu -18 295 1 1869 160 3 31 chrX 27601783 27602102 -149372038 + AluJb SINE Alu 1 310 -2 363 151 38 184 chrX 27602104 27602168 -149371972 - MER112 DNA MER1_type -102 158 86 2289 86 0 3 chrX 27602168 27602459 -149371681 - AluSg SINE Alu -19 291 2 363 151 38 184 chrX 27602459 27602579 -149371561 - MER112 DNA MER1_type -174 86 1 471 188 115 12 chrX 27602597 27602762 -149371378 - L1MC4 LINE L1 0 8042 7861 629 157 9 28 chrX 27602762 27602870 -149371270 + FRAM SINE Alu 58 163 -13 1086 236 40 88 chrX 27603638 27603887 -149370253 - MLT1I LTR MaLR 0 409 150 2650 59 0 0 chrX 27603887 27604192 -149369948 - AluY SINE Alu -6 305 1 2203 105 17 0 chrX 27604192 27604487 -149369653 - AluSx SINE Alu -12 300 1 1086 236 40 88 chrX 27604487 27604656 -149369484 - MLT1I LTR MaLR -257 152 10 1528 149 4 25 chrX 27604661 27604902 -149369238 + AluJo SINE Alu 1 236 -76 4164 152 29 3 chrX 27604904 27605597 -149368543 + MER50 LTR ERV1 1 711 -23 416 138 0 0 chrX 27605598 27605663 -149368477 + AluS SINE Alu 233 297 -13 1740 131 28 0 chrX 27606759 27607011 -149367129 + AluJo SINE Alu 40 298 -14 2669 80 19 21 chrX 27607446 27607821 -149366319 - THE1C LTR MaLR -1 374 1 363 121 0 0 chrX 27607859 27607917 -149366223 + (TCCCC)n Simple_repeat Simple_repeat 4 61 0 340 259 54 70 chrX 27608423 27608608 -149365532 - MER112 DNA MER1_type -40 220 39 1866 145 22 4 chrX 27608609 27608905 -149365235 + AluJo SINE Alu 1 301 0 2485 71 0 0 chrX 27608913 27609208 -149364932 + AluSq SINE Alu 7 301 -12 2213 96 6 35 chrX 27609252 27609564 -149364576 + AluSx SINE Alu 1 303 -9 1359 86 17 0 chrX 27609564 27609739 -149364401 + AluSg/x SINE Alu 132 309 -1 439 37 0 0 chrX 27609977 27610031 -149364109 + MADE1 DNA Mariner 1 54 -26 614 250 46 7 chrX 27610449 27610601 -149363539 - MIR SINE MIR -73 189 32 1010 232 60 0 chrX 27610705 27610938 -149363202 + L1M4 LINE L1 3775 4021 -2125 530 45 0 146 chrX 27610942 27610991 -149363149 - MADE1 DNA Mariner -4 76 44 2354 89 3 0 chrX 27610991 27611284 -149362856 + AluSp SINE Alu 1 294 -19 530 45 0 146 chrX 27611284 27611323 -149362817 - MADE1 DNA Mariner -36 44 1 1022 182 5 11 chrX 27611326 27611513 -149362627 + AluJb SINE Alu 126 311 -1 1467 204 6 57 chrX 27611514 27611608 -149362532 + L1M4 LINE L1 4011 4108 -2038 2298 117 0 3 chrX 27611608 27611907 -149362233 - AluSx SINE Alu -14 298 1 1467 204 6 57 chrX 27611907 27612165 -149361975 + L1M4 LINE L1 4108 4345 -1801 579 124 21 10 chrX 27612167 27612264 -149361876 + MER4A LTR ERV1 1 98 -566 1732 100 242 21 chrX 27612264 27612595 -149361545 + MER4A LTR ERV1 261 664 0 1535 216 31 68 chrX 27612595 27612731 -149361409 + L1M4 LINE L1 4344 4484 -1662 2358 111 0 0 chrX 27612731 27613038 -149361102 + AluSg SINE Alu 1 307 -3 1535 216 31 68 chrX 27613038 27613398 -149360742 + L1M4 LINE L1 4484 4819 -1327 1848 160 0 36 chrX 27613398 27613705 -149360435 + AluJo SINE Alu 3 298 -14 1535 216 31 68 chrX 27613705 27613762 -149360378 + L1M4 LINE L1 4819 4877 -1269 * 2698 193 63 20 chrX 27613760 27613920 -149360220 + L1MC/D LINE L1 4725 4877 -1482 2260 105 7 7 chrX 27613920 27614216 -149359924 + AluSx SINE Alu 1 296 -16 2698 193 63 20 chrX 27614216 27614359 -149359781 + L1MC/D LINE L1 4877 5012 -1347 2467 70 0 7 chrX 27614359 27614661 -149359479 + AluY SINE Alu 1 300 -11 2698 193 63 20 chrX 27614661 27615363 -149358777 + L1MC/D LINE L1 5012 5780 -579 2404 112 0 0 chrX 27615363 27615676 -149358464 + AluSq SINE Alu 1 313 0 325 196 119 53 chrX 27615727 27615880 -149358260 - L1MEc LINE L1 -2953 3262 2042 28 29 0 0 chrX 27615905 27615940 -149358200 + AT_rich Low_complexity Low_complexity 1 35 0 468 257 0 0 chrX 27616414 27616519 -149357621 - MLT1J LTR MaLR -1 510 406 1177 150 142 0 chrX 27616519 27616743 -149357397 + L1MA8 LINE L1 5839 6106 -185 2324 102 0 6 chrX 27616743 27617056 -149357084 + AluSp SINE Alu 2 312 -1 1177 150 142 0 chrX 27617056 27617091 -149357049 + L1MA8 LINE L1 6106 6135 -156 1840 130 78 0 chrX 27617091 27617398 -149356742 - AluSx SINE Alu 0 312 1 2148 117 3 26 chrX 27617895 27618202 -149355938 + AluJb SINE Alu 3 302 -10 396 329 70 4 chrX 27618271 27618499 -149355641 - L2 LINE L2 -219 3053 2811 834 328 0 0 chrX 27618503 27618741 -149355399 - MIR SINE MIR -10 252 15 207 133 0 44 chrX 27618790 27618835 -149355305 + (TTTC)n Simple_repeat Simple_repeat 3 45 0 2434 90 3 3 chrX 27618841 27619151 -149354989 - AluSq SINE Alu -3 310 1 1820 159 20 74 chrX 27619157 27619233 -149354907 - L1MB7 LINE L1 -14 6170 6091 1805 147 0 67 chrX 27619233 27619547 -149354593 - AluJo SINE Alu -17 295 3 1820 159 20 74 chrX 27619547 27619828 -149354312 - L1MB7 LINE L1 -93 6091 5839 2561 77 0 0 chrX 27619828 27620139 -149354001 - AluSq SINE Alu -2 311 1 1820 159 20 74 chrX 27620139 27620226 -149353914 - L1MB7 LINE L1 -345 5839 5749 1927 197 2 13 chrX 27620248 27620644 -149353496 - L1PB4 LINE L1 -1 6155 5764 251 306 96 106 chrX 27620646 27620921 -149353219 - L2 LINE L2 -568 2746 2474 2012 102 3 51 chrX 27620921 27621244 -149352896 - AluSx SINE Alu 0 309 1 251 306 96 106 chrX 27621244 27621382 -149352758 - L2 LINE L2 -840 2474 2336 305 334 103 23 chrX 27821884 27822186 -149151954 - L2 LINE L2 -1191 2123 1798 1001 244 56 30 chrX 27822223 27822489 -149151651 + MLT1H1 LTR MaLR 1 273 -282 1033 135 36 26 chrX 27822490 27822682 -149151458 - THE1C LTR MaLR -2 373 180 864 293 95 8 chrX 27825407 27825776 -149148364 + MLT1I LTR MaLR 1 401 -8 385 312 89 49 chrX 27826198 27826726 -149147414 + L1ME4a LINE L1 4416 4961 -1185 336 294 68 25 chrX 27826989 27827152 -149146988 + L1ME4a LINE L1 5303 5472 -2336 392 206 6 120 chrX 27827282 27827457 -149146683 + L1ME4a LINE L1 5967 6121 0 431 326 87 26 chrX 27827946 27828562 -149145578 - L1ME2 LINE L1 -258 5906 5258 2029 247 138 25 chrX 27828956 27829478 -149144662 - MLT1G LTR MaLR 0 590 10 243 61 0 0 chrX 27830086 27830119 -149144021 + (CA)n Simple_repeat Simple_repeat 1 33 0 862 282 194 24 chrX 27830119 27830537 -149143603 + L2 LINE L2 2825 3313 0 297 109 0 0 chrX 27830556 27830602 -149143538 + (TG)n Simple_repeat Simple_repeat 1 46 0 1580 155 15 4 chrX 27830750 27831014 -149143126 - AluJo SINE Alu -3 309 43 320 332 38 38 chrX 27832424 27832606 -149141534 - MIR SINE MIR -50 212 33 818 220 28 0 chrX 27832616 27832798 -149141342 + MER5A DNA MER1_type 1 187 -2 216 214 0 0 chrX 27832969 27833011 -149141129 + A-rich Low_complexity Low_complexity 1 42 0 2353 224 35 26 chrX 27833637 27834359 -149139781 + L1M4 LINE L1 3881 4608 -1538 210 302 0 0 chrX 27834410 27834473 -149139667 + MIR SINE MIR 200 262 0 1548 275 77 44 chrX 27834781 27836055 -149138085 + L1ME LINE L1 51 1333 -4747 14790 161 85 7 chrX 27836064 27840210 -149133930 + L1PBa LINE L1 1 4470 -2392 348 24 0 0 chrX 27840216 27840257 -149133883 + (CA)n Simple_repeat Simple_repeat 2 42 0 2686 92 0 5 chrX 27840257 27840622 -149133518 + L1PB1 LINE L1 5788 6150 -1 280 254 0 0 chrX 27840702 27840769 -149133371 + L1ME LINE L1 1386 1452 -4809 230 261 58 35 chrX 27840798 27841024 -149133116 - L1M4 LINE L1 -820 5326 5096 765 181 112 32 chrX 27841194 27841382 -149132758 + L1MD2 LINE L1 6146 6348 -11 314 286 68 15 chrX 27841408 27841541 -149132599 + MARNA DNA Mariner 370 509 -77 414 257 125 13 chrX 27841639 27841791 -149132349 - MIR SINE MIR -39 223 55 960 201 211 27 chrX 27842275 27842762 -149131378 - Charlie2 DNA MER1_type -4 2858 2282 4797 89 9 12 chrX 27842768 27843433 -149130707 - L1PA10 LINE L1 -116 6052 5390 1311 243 51 9 chrX 27843433 27843861 -149130279 - Charlie2 DNA MER1_type -564 2298 1853 698 233 54 66 chrX 27843849 27844107 -149130033 - Charlie2 DNA MER1_type -2532 330 76 * 723 290 0 11 chrX 27844225 27844408 -149129732 + MIR SINE MIR 41 221 -41 5034 206 31 11 chrX 27844918 27845930 -149128210 - MER45B DNA AcHobo -8 1032 1 503 285 29 0 chrX 27846206 27846343 -149127797 + LTR16A LTR ERVL 96 236 -214 470 146 19 39 chrX 27846376 27846479 -149127661 - MER53 DNA DNA -88 101 1 380 276 16 0 chrX 27846479 27846590 -149127550 + LTR16A LTR ERVL 242 354 -96 239 221 12 0 chrX 27846868 27846954 -149127186 + (TA)n Simple_repeat Simple_repeat 2 88 0 621 323 26 18 chrX 27847154 27847383 -149126757 + MIR SINE MIR 2 232 -30 28 29 0 0 chrX 27847383 27847418 -149126722 + AT_rich Low_complexity Low_complexity 1 35 0 209 293 4 21 chrX 27848278 27848358 -149125782 - MER5A DNA MER1_type -98 91 2 183 80 0 0 chrX 27848680 27848705 -149125435 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 235 357 0 0 chrX 27848707 27848763 -149125377 - L2 LINE L2 -12 3260 3205 528 287 89 25 chrX 27849366 27849568 -149124572 - MIR SINE MIR 0 262 48 395 270 66 66 chrX 27850627 27850764 -149123376 + L2 LINE L2 3136 3272 0 1402 298 95 4 chrX 27850991 27851465 -149122675 + MER69 DNA AcHobo 2 518 -708 * 1431 206 64 0 chrX 27851460 27851804 -149122336 + MER69 DNA AcHobo 2161 2526 0 2700 39 0 0 chrX 27852120 27852430 -149121710 - AluY SINE Alu -1 310 1 1478 272 79 10 chrX 27852869 27853350 -149120790 + LTR33 LTR ERVL 1 514 -7 411 254 65 53 chrX 27854245 27854414 -149119726 + HAL1 LINE L1 1014 1184 -1323 5927 175 26 2 chrX 27854473 27856509 -149117631 - L1PA16 LINE L1 -9 6157 4074 279 0 0 0 chrX 27856550 27856581 -149117559 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 44041 36 6 1 chrX 27856584 27862710 -149111430 - L1PA3 LINE L1 -3 6152 1 2958 218 51 19 chrX 27862707 27863458 -149110682 - L1PA16 LINE L1 -2058 4088 3314 * 258 375 25 17 chrX 27863844 27863964 -149110176 - L2 LINE L2 0 3272 3152 375 105 0 0 chrX 27864325 27864382 -149109758 + (TC)n Simple_repeat Simple_repeat 2 58 0 261 0 0 0 chrX 27864382 27864411 -149109729 + (CA)n Simple_repeat Simple_repeat 1 29 0 2053 215 40 7 chrX 27865736 27866331 -149107809 - L1MD2 LINE L1 -1 6358 5695 4760 209 114 30 chrX 27866341 27867654 -149106486 - L1MDa LINE L1 -4666 1874 117 2461 89 0 3 chrX 27867654 27867968 -149106172 - AluSq SINE Alu 0 313 1 4760 209 114 30 chrX 27867968 27868076 -149106064 - L1MDa LINE L1 -6423 117 19 192 77 0 0 chrX 27868756 27868782 -149105358 + (A)n Simple_repeat Simple_repeat 1 26 0 659 243 45 28 chrX 27868884 27869061 -149105079 - MER5A DNA MER1_type -1 188 9 264 111 0 0 chrX 27870905 27870950 -149103190 + (GA)n Simple_repeat Simple_repeat 1 45 0 2036 235 123 5 chrX 27871390 27871977 -149102163 + L1ME3 LINE L1 5507 6162 0 182 37 37 0 chrX 27872235 27872262 -149101878 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 28 29 0 0 chrX 27872311 27872346 -149101794 + AT_rich Low_complexity Low_complexity 1 35 0 278 302 19 38 chrX 27873442 27873548 -149100592 - L2 LINE L2 -914 2400 2297 4789 215 54 27 chrX 27873591 27874850 -149099290 + L1MB7 LINE L1 1 1293 -5249 285 258 0 0 chrX 27874952 27875018 -149099122 - MLT1-int LTR MaLR -635 736 671 * 9753 219 28 17 chrX 27874993 27877807 -149096333 + L1MB7 LINE L1 2713 5558 -1086 2070 191 28 74 chrX 27877809 27878390 -149095750 - MLT2B3 LTR ERVL 0 554 1 4902 100 8 5 chrX 27878390 27879340 -149094800 - HERVL-B3 LTR ERVL 0 5654 4666 4364 165 12 48 chrX 27879362 27880468 -149093672 + L1MB7 LINE L1 5588 6663 -19 335 324 89 19 chrX 27880502 27880817 -149093323 - L2 LINE L2 -1152 2162 1826 315 306 67 22 chrX 27881112 27881246 -149092894 + MER5A DNA MER1_type 1 140 -49 943 179 6 0 chrX 27881330 27881486 -149092654 - MER5A DNA MER1_type -32 157 1 187 317 170 15 chrX 27881649 27881990 -149092150 - L2 LINE L2 -2295 1019 626 197 364 8 25 chrX 27882008 27882126 -149092014 - MIR SINE MIR -138 124 9 977 311 13 19 chrX 27882447 27882917 -149091223 + L1ME LINE L1 5355 5821 -349 5833 116 5 20 chrX 27883201 27884287 -149089853 + L1PA15 LINE L1 5080 6159 -6 799 285 66 31 chrX 27885448 27885767 -149088373 - MLT1I LTR MaLR 0 409 80 205 272 85 66 chrX 27886112 27886293 -149087847 - MIR3 SINE MIR -7 201 12 323 164 60 15 chrX 27886685 27886752 -149087388 + LTR67 LTR ERVL 484 553 -4 228 35 0 0 chrX 27887307 27887336 -149086804 - L1P LINE L1 -1055 5091 5063 2375 11 0 0 chrX 27887338 27887608 -149086532 + L1PA2 LINE L1 5885 6154 -1 31 68 0 0 chrX 27888139 27888198 -149085942 + AT_rich Low_complexity Low_complexity 1 59 0 181 348 169 0 chrX 27888459 27888548 -149085592 - MIR SINE MIR -81 127 24 348 24 0 0 chrX 27889369 27889410 -149084730 + (TTA)n Simple_repeat Simple_repeat 2 42 0 475 224 0 0 chrX 27889412 27889497 -149084643 - FRAM SINE Alu -30 146 62 262 288 72 9 chrX 27889497 27889608 -149084532 - MIR SINE MIR -61 201 84 4345 296 70 25 chrX 27889695 27891207 -149082933 + L2 LINE L2 793 2372 -942 761 291 104 13 chrX 27891258 27891574 -149082566 + MLT1I LTR MaLR 63 407 -2 507 96 0 0 chrX 27892040 27892113 -149082027 + L1PB4 LINE L1 6077 6149 -7 278 211 0 0 chrX 27892143 27892200 -149081940 + MLT1I LTR MaLR 346 402 -7 724 258 47 9 chrX 27892207 27892420 -149081720 + L2 LINE L2 2370 2590 -724 1079 249 23 34 chrX 27892426 27892780 -149081360 + MLT1E2 LTR MaLR 1 350 -276 773 86 43 0 chrX 27893201 27893318 -149080822 - L1PA12 LINE L1 0 6168 6047 9465 171 17 13 chrX 27893595 27895534 -149078606 - L1P LINE L1 -1413 4733 2787 7562 96 7 0 chrX 27895681 27896803 -149077337 + L1PA7 LINE L1 1641 2770 -3376 11980 92 19 15 chrX 27896803 27898614 -149075526 + L1PA7 LINE L1 3663 5486 -668 1984 116 0 0 chrX 27898614 27898882 -149075258 + AluSg1 SINE Alu 35 302 -7 11980 92 19 15 chrX 27898882 27899548 -149074592 + L1PA7 LINE L1 5486 6148 -6 594 134 0 0 chrX 27899591 27899673 -149074467 - AluS SINE Alu -228 84 3 794 303 67 0 chrX 27899780 27900018 -149074122 + MIR SINE MIR 9 262 0 198 0 0 0 chrX 27901093 27901115 -149073025 + (CA)n Simple_repeat Simple_repeat 1 22 0 2317 154 29 12 chrX 27902212 27902633 -149071507 + MSTA LTR MaLR 1 428 0 9819 157 11 11 chrX 27902633 27902774 -149071366 + MSTA-int LTR MaLR 1 140 -1511 2034 80 0 45 chrX 27902774 27903060 -149071080 - AluY SINE Alu -4 307 35 9819 157 11 11 chrX 27903060 27904568 -149069572 + MSTA-int LTR MaLR 140 1651 0 2424 157 34 2 chrX 27904568 27904983 -149069157 + MSTA LTR MaLR 1 428 0 187 338 75 38 chrX 27905090 27905170 -149068970 - L2 LINE L2 -39 3274 3192 456 304 29 108 chrX 27905206 27905446 -149068694 + L2 LINE L2 3034 3254 -18 240 374 112 5 chrX 27905465 27905652 -149068488 - L3b LINE CR1 -245 1338 1132 229 299 11 46 chrX 27905749 27905836 -149068304 + MIR SINE MIR 119 202 -60 22 0 0 0 chrX 27905923 27905945 -149068195 + AT_rich Low_complexity Low_complexity 1 22 0 1749 60 38 17 chrX 27906601 27906836 -149067304 - L1PA8A LINE L1 0 6131 5892 541 303 51 127 chrX 27907078 27908142 -149065998 - L2 LINE L2 -5 3267 2290 9178 175 27 11 chrX 27908147 27909836 -149064304 - L1M1 LINE L1 -5836 1729 13 208 292 26 131 chrX 27911262 27911529 -149062611 + L2 LINE L2 3072 3310 -3 267 316 59 52 chrX 27912935 27913071 -149061069 - MER5A DNA MER1_type -52 137 1 923 189 44 0 chrX 27913094 27913274 -149060866 - MER5A DNA MER1_type 0 189 2 679 275 58 47 chrX 27914476 27914574 -149059566 - L1MC4a LINE L1 -1945 5863 5768 1436 183 90 17 chrX 27914574 27914864 -149059276 - AluJo SINE Alu -1 311 1 679 275 58 47 chrX 27914864 27915018 -149059122 - L1MC4a LINE L1 -2040 5768 5603 1292 264 149 7 chrX 27915018 27915473 -149058667 + LTR33 LTR ERVL 1 520 -1 679 275 58 47 chrX 27915473 27915561 -149058579 - L1MC4a LINE L1 -2205 5603 5518 2187 110 0 7 chrX 27916069 27916369 -149057771 + AluSx SINE Alu 1 298 -14 677 262 74 15 chrX 27917318 27917520 -149056620 - MIR SINE MIR 0 262 49 628 289 28 41 chrX 27917522 27917636 -149056504 - LTR16A1 LTR ERVL 0 457 343 2950 191 4 11 chrX 27917636 27918180 -149055960 - MLT1F LTR MaLR -2 540 1 628 289 28 41 chrX 27918180 27918356 -149055784 - LTR16A1 LTR ERVL -114 343 171 248 168 50 12 chrX 27918738 27918899 -149055241 + (TA)n Simple_repeat Simple_repeat 2 168 0 442 223 23 0 chrX 27919135 27919265 -149054875 + (TATATG)n Simple_repeat Simple_repeat 3 135 0 210 71 0 0 chrX 27919389 27919417 -149054723 + (CA)n Simple_repeat Simple_repeat 2 29 0 4333 125 47 26 chrX 27919696 27920471 -149053669 + L1PA16 LINE L1 5370 6160 -6 322 248 73 37 chrX 27921229 27921338 -149052802 - MER5A DNA MER1_type 0 189 77 555 306 62 47 chrX 27921939 27922325 -149051815 - LTR16C LTR ERVL -17 474 83 305 329 82 29 chrX 27923328 27923498 -149050642 - L2 LINE L2 -2946 368 190 283 323 24 40 chrX 27923669 27923920 -149050220 + HAL1 LINE L1 1464 1710 -797 1131 261 45 39 chrX 27924948 27925525 -149048615 - L1MDa LINE L1 -4711 1369 833 2688 79 6 6 chrX 27925525 27925879 -149048261 - THE1A LTR MaLR 0 355 2 1131 261 45 39 chrX 27925879 27926197 -149047943 - L1MDa LINE L1 -5247 833 518 680 302 72 26 chrX 27926399 27926786 -149047354 - L1MDa LINE L1 -5652 418 14 1119 120 150 0 chrX 27926818 27927018 -149047122 - MER30 DNA MER1_type 0 230 1 1726 150 82 28 chrX 27927051 27927405 -149046735 - THE1C LTR MaLR 0 375 3 471 280 89 6 chrX 27927725 27927882 -149046258 + MIR SINE MIR 83 252 -10 494 117 26 0 chrX 27927885 27927962 -149046178 - Tigger7 DNA MER2_type -1 2486 2408 1153 236 81 9 chrX 27927964 27928286 -149045854 - MER2 DNA MER2_type 0 345 1 527 108 98 0 chrX 27928286 27928385 -149045755 - Tigger7 DNA MER2_type -81 2410 2302 1752 151 43 3 chrX 27928381 27928685 -149045455 - Tigger7 DNA MER2_type -415 318 3 455 321 22 27 chrX 27928790 27928974 -149045166 + MER5A DNA MER1_type 7 189 0 210 343 0 15 chrX 27929631 27929698 -149044442 + L2 LINE L2 3207 3272 0 1462 232 39 37 chrX 27930850 27931312 -149042828 + MLT1C LTR MaLR 1 463 -4 1109 256 53 64 chrX 27931319 27931772 -149042368 + LTR16C LTR ERVL 44 491 0 23 0 0 0 chrX 27932758 27932781 -149041359 + AT_rich Low_complexity Low_complexity 1 23 0 7403 79 6 5 chrX 27932781 27933907 -149040233 - L1MA2 LINE L1 0 6304 5177 1492 151 52 73 chrX 27936314 27936738 -149037402 - LTR37B LTR ERV1 -2 466 52 788 227 44 39 chrX 27937869 27938072 -149036068 + MER63A DNA MER1_type 7 210 0 498 304 18 0 chrX 27939100 27939212 -149034928 - MER91A DNA MER1_type -11 185 72 3325 195 69 7 chrX 27939467 27940386 -149033754 - Charlie2 DNA MER1_type -31 2831 1856 1086 186 69 75 chrX 27940376 27940709 -149033431 - Charlie2 DNA MER1_type -2451 331 1 * 826 164 5 62 chrX 27940723 27940918 -149033222 + MER53 DNA DNA 2 185 -4 226 167 0 0 chrX 27941102 27941138 -149033002 + L2 LINE L2 3269 3304 -9 485 249 301 41 chrX 27941331 27941650 -149032490 + L2 LINE L2 2706 3088 -225 228 143 0 0 chrX 27941741 27941776 -149032364 - MLT1J LTR MaLR -378 133 99 258 279 94 65 chrX 27942043 27942383 -149031757 - L2 LINE L2 -1723 1591 1242 208 135 0 0 chrX 27942391 27942428 -149031712 + (A)n Simple_repeat Simple_repeat 1 37 0 825 271 104 0 chrX 27942635 27942856 -149031284 + MIR SINE MIR 19 262 0 1302 303 39 7 chrX 27943143 27943556 -149030584 - LTR16A LTR ERVL 0 450 25 201 238 0 0 chrX 27943779 27943821 -149030319 + (TG)n Simple_repeat Simple_repeat 2 43 0 336 102 0 0 chrX 27944618 27944667 -149029473 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 223 283 33 33 chrX 27944785 27944877 -149029263 - L2 LINE L2 -12 3301 3210 853 248 182 24 chrX 27945007 27945342 -149028798 + LTR16C LTR ERVL 102 489 -2 1733 143 65 17 chrX 27946297 27946591 -149027549 + AluSx SINE Alu 1 308 -4 1097 148 24 29 chrX 27948228 27948438 -149025702 + MER3 DNA MER1_type 1 209 0 377 277 62 0 chrX 27950353 27950483 -149023657 + L2 LINE L2 1915 2052 -1262 385 342 50 46 chrX 27950660 27950920 -149023220 + L2 LINE L2 2158 2418 -896 1269 282 92 13 chrX 27950930 27951377 -149022763 - LTR16C LTR ERVL -9 482 1 425 338 24 24 chrX 27951378 27951588 -149022552 + L2 LINE L2 2422 2631 -683 4269 156 12 1 chrX 27952061 27952806 -149021334 + L1MB1 LINE L1 5409 6161 -7 472 340 29 66 chrX 27952874 27953330 -149020810 + L2 LINE L2 2825 3263 -9 180 263 0 0 chrX 27953615 27953653 -149020487 - L2 LINE L2 -398 2915 2878 1330 213 50 25 chrX 27953653 27954242 -149019898 + L1MDa LINE L1 2381 2973 -3567 752 251 12 25 chrX 27954242 27954270 -149019870 + L1MDa LINE L1 3722 3749 -2791 2198 172 48 78 chrX 27954270 27954322 -149019818 - MLT2B1 LTR ERVL 0 520 468 525 16 0 0 chrX 27954322 27954384 -149019756 + (TG)n Simple_repeat Simple_repeat 1 62 0 2198 172 48 78 chrX 27954384 27954867 -149019273 - MLT2B1 LTR ERVL -52 468 1 752 251 12 25 chrX 27954867 27955081 -149019059 + L1MDa LINE L1 3749 3961 -2579 378 183 37 0 chrX 27955104 27955186 -149018954 + MLT1G1 LTR MaLR 511 595 0 222 158 26 0 chrX 27955601 27955639 -149018501 - MIR SINE MIR -8 254 216 678 225 48 89 chrX 27955663 27955934 -149018206 - L1MDa LINE L1 -6263 277 18 525 223 202 41 chrX 27955935 27956364 -149017776 - MLT1G1 LTR MaLR -61 534 1 822 283 32 8 chrX 27956479 27956726 -149017414 + MIR SINE MIR 7 259 -3 33 0 0 0 chrX 27956776 27956809 -149017331 + AT_rich Low_complexity Low_complexity 1 33 0 1087 263 91 8 chrX 27958016 27958388 -149015752 - LTR16C LTR ERVL -18 473 71 196 238 48 32 chrX 27958945 27959008 -149015132 + MER5A DNA MER1_type 126 189 0 1842 193 18 20 chrX 27959063 27959457 -149014683 + MLT2C1 LTR ERVL 1 393 -4 180 327 85 45 chrX 27959497 27959827 -149014313 - L2 LINE L2 -737 2577 2235 21 57 0 0 chrX 27960256 27960291 -149013849 + AT_rich Low_complexity Low_complexity 1 35 0 1606 274 96 6 chrX 27960317 27960795 -149013345 + LTR33 LTR ERVL 1 521 0 722 303 51 4 chrX 27960929 27961163 -149012977 + MIR SINE MIR 17 261 -1 323 189 14 14 chrX 27961758 27961832 -149012308 - MLT1K LTR MaLR -4 584 511 257 221 39 79 chrX 27961832 27961885 -149012255 - LTR67 LTR ERVL -4 553 432 3998 140 31 16 chrX 27962737 27963437 -149010703 + MER50 LTR ERV1 1 711 -23 293 250 0 0 chrX 27964538 27964602 -149009538 - L2 LINE L2 0 3313 3250 1401 293 30 5 chrX 27964997 27965431 -149008709 + LTR16A LTR ERVL 1 445 -5 3231 121 73 32 chrX 27966103 27966690 -149007450 - LTR9 LTR ERV1 -1 611 1 392 269 0 37 chrX 27966716 27966824 -149007316 + L2 LINE L2 3169 3272 0 634 293 110 26 chrX 27967822 27968095 -149006045 + HAL1 LINE L1 855 1150 -1357 229 220 0 0 chrX 27968095 27968145 -149005995 - MLT2F LTR ERVL 0 663 614 2172 107 0 14 chrX 27968181 27968651 -149005489 + AluSp SINE Alu 1 466 0 1473 183 20 58 chrX 27968661 27969006 -149005134 - MLT2C1 LTR ERVL -65 332 1 1045 253 152 46 chrX 27969019 27969675 -149004465 + HAL1 LINE L1 1178 1903 -604 21162 171 12 10 chrX 27969783 27974507 -148999633 - L1PA11 LINE L1 -2 7610 2085 3000 61 13 0 chrX 27974507 27974898 -148999242 - L1PA7 LINE L1 -1 6153 5758 21162 171 12 10 chrX 27974898 27976986 -148997154 - L1PA11 LINE L1 -5527 2085 2 332 102 0 0 chrX 27976988 27977037 -148997103 + LTR24B LTR ERV1 521 569 -7 750 282 14 29 chrX 27977037 27977314 -148996826 + LTR24B-int LTR ERV1 2 274 -4849 1779 146 8 36 chrX 27977370 27977726 -148996414 + L1MB8 LINE L1 5833 6178 0 227 250 0 26 chrX 27978146 27978221 -148995919 + L3 LINE CR1 1464 1536 -41 452 177 203 57 chrX 27978221 27978379 -148995761 - MER5A DNA MER1_type 0 189 9 186 275 88 12 chrX 27978350 27978430 -148995710 + MIR3 SINE MIR 110 195 -13 * 29 28 0 0 chrX 27978910 27978946 -148995194 + AT_rich Low_complexity Low_complexity 1 36 0 328 272 33 33 chrX 27979013 27979197 -148994943 - HAL1 LINE L1 -102 2405 2222 312 211 40 13 chrX 27979496 27979572 -148994568 - HAL1 LINE L1 -355 2152 2075 1214 158 83 37 chrX 27979722 27980064 -148994076 - MSTD LTR MaLR 0 396 1 664 224 101 13 chrX 27980267 27980495 -148993645 - MER112 DNA MER1_type -4 256 9 457 240 131 26 chrX 27980760 27980989 -148993151 - MER97c DNA MER1_type? -2 1088 836 2067 236 60 33 chrX 27981082 27981634 -148992506 - MER97a DNA MER1_type? -324 570 4 338 246 116 65 chrX 27983202 27983417 -148990723 + L1ME4a LINE L1 5398 5623 -498 * 355 258 8 58 chrX 27983410 27983530 -148990610 + L1ME3A LINE L1 5558 5671 -499 2633 129 28 56 chrX 27983530 27983623 -148990517 - LTR47A LTR ERVL 0 452 358 5813 123 8 10 chrX 27983623 27985006 -148989134 + L1PA13 LINE L1 4775 6159 -4 2633 129 28 56 chrX 27985006 27985377 -148988763 - LTR47A LTR ERVL -94 358 1 1833 219 53 31 chrX 27985377 27985866 -148988274 + L1ME3A LINE L1 5667 6166 -4 681 299 58 13 chrX 27985877 27986188 -148987952 + L1ME4a LINE L1 5610 5934 -187 42734 34 22 2 chrX 27986954 27992984 -148981156 - L1PA2 LINE L1 -2 6153 3 22 35 0 0 chrX 27993264 27993293 -148980847 + AT_rich Low_complexity Low_complexity 1 29 0 1596 218 50 40 chrX 27993758 27994258 -148979882 - MLT1D LTR MaLR 0 505 1 188 42 0 0 chrX 27994260 27994284 -148979856 + L2 LINE L2 3243 3266 -6 26 0 0 0 chrX 27994598 27994624 -148979516 + AT_rich Low_complexity Low_complexity 1 26 0 335 236 22 11 chrX 27995505 27995594 -148978546 + MER5B DNA MER1_type 31 120 -58 258 234 13 13 chrX 27995612 27995689 -148978451 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 429 215 89 45 chrX 27995855 27996102 -148978038 - L1MC5 LINE L1 -226 7735 7478 718 256 60 12 chrX 27996122 27996372 -148977768 - L1MC5 LINE L1 -1958 5850 5589 16126 197 31 23 chrX 27996994 27997385 -148976755 + L1PA15 LINE L1 1171 1557 -5259 2332 101 48 22 chrX 27997385 27997740 -148976400 + THE1B LTR MaLR 1 364 0 16126 197 31 23 chrX 27997740 28000267 -148973873 + L1PA15 LINE L1 1557 4061 -2755 189 0 0 0 chrX 28000267 28000288 -148973852 + (TAA)n Simple_repeat Simple_repeat 1 21 0 16126 197 31 23 chrX 28000288 28002968 -148971172 + L1PA15 LINE L1 4061 6816 0 2380 214 34 6 chrX 28003520 28004025 -148970115 + LTR53 LTR ERVL 1 519 0 200 211 96 19 chrX 28004026 28004078 -148970062 + MIR SINE MIR 160 215 -47 264 232 43 0 chrX 28004265 28004334 -148969806 + MIR SINE MIR 183 254 -8 427 333 42 11 chrX 28004925 28005114 -148969026 + MIR3 SINE MIR 3 197 -11 206 330 85 9 chrX 28005125 28005231 -148968909 + MIR SINE MIR 21 134 -128 1384 282 116 19 chrX 28005283 28005985 -148968155 + L2 LINE L2 2495 3313 0 452 225 18 9 chrX 28006103 28006214 -148967926 + L1MCa LINE L1 163 274 -6290 375 187 13 0 chrX 28006220 28006295 -148967845 - L1MCb LINE L1 -5400 645 570 4107 210 137 38 chrX 28006324 28007788 -148966352 + L1MCa LINE L1 109 1862 -4702 3124 107 2 7 chrX 28007788 28008246 -148965894 + L1PB1 LINE L1 5695 6150 -1 4107 210 137 38 chrX 28008246 28008930 -148965210 + L1MCa LINE L1 1862 2477 -4087 35 0 0 0 chrX 28008960 28008995 -148965145 + AT_rich Low_complexity Low_complexity 1 35 0 7637 28 0 0 chrX 28008995 28009894 -148964246 - L1PA3 LINE L1 -3 6152 5254 6233 103 3 56 chrX 28009898 28011131 -148963009 + L1MC/D LINE L1 4465 5630 -743 1190 190 0 22 chrX 28011127 28011353 -148962787 + L1MC3 LINE L1 5487 5707 -637 * 496 203 78 8 chrX 28011352 28011480 -148962660 + L1M1 LINE L1 5 141 -7424 * 7317 160 17 22 chrX 28011469 28013745 -148960395 + L1M1 LINE L1 2929 5192 -2373 2349 109 44 0 chrX 28013745 28014125 -148960015 + L1MA2 LINE L1 5904 6304 0 6967 165 35 30 chrX 28014144 28015561 -148958579 + L1MC3 LINE L1 5693 7116 -669 1766 158 11 45 chrX 28015562 28015942 -148958198 + L1MA7 LINE L1 5915 6281 -10 927 129 12 18 chrX 28015965 28016128 -148958012 + L1MC3 LINE L1 7617 7778 -7 1876 201 38 40 chrX 28016820 28017317 -148956823 - L1ME3A LINE L1 -29 6141 5646 642 299 46 11 chrX 28017364 28017591 -148956549 + MIR SINE MIR 30 261 -1 1675 233 119 53 chrX 28018141 28018819 -148955321 + MER50 LTR ERV1 10 732 -2 206 250 0 15 chrX 28019090 28019158 -148954982 + CT-rich Low_complexity Low_complexity 2 68 0 996 285 88 21 chrX 28019173 28019783 -148954357 - L1ME4a LINE L1 -206 5915 5265 4457 71 5 2 chrX 28020331 28020923 -148953217 - L1PB2 LINE L1 -1 6150 5557 215 259 12 82 chrX 28020923 28021008 -148953132 - L2 LINE L2 -12 3260 3182 415 343 36 0 chrX 28021259 28021396 -148952744 + MIR SINE MIR 10 151 -111 2296 108 0 6 chrX 28021396 28021710 -148952430 + AluSx SINE Alu 1 312 0 390 304 89 15 chrX 28022621 28022756 -148951384 - MIR SINE MIR -113 149 5 24 32 0 0 chrX 28023677 28023708 -148950432 + AT_rich Low_complexity Low_complexity 1 31 0 457 304 77 5 chrX 28024988 28025182 -148948958 - L2 LINE L2 0 3313 3106 180 0 0 0 chrX 28025392 28025412 -148948728 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 268 190 26 27 chrX 28026062 28026139 -148948001 + L1MC4 LINE L1 1991 6989 -1333 2791 164 66 77 chrX 28026168 28026741 -148947399 - MLT1F1 LTR MaLR 0 567 1 29 0 0 0 chrX 28026854 28026883 -148947257 + AT_rich Low_complexity Low_complexity 1 29 0 455 276 12 77 chrX 28026993 28027163 -148946977 - MIR SINE MIR -92 170 12 306 358 64 32 chrX 28027260 28027447 -148946693 - L2 LINE L2 -217 3055 2863 288 0 0 0 chrX 28028490 28028522 -148945618 + (CA)n Simple_repeat Simple_repeat 2 33 0 232 253 61 40 chrX 28029528 28029627 -148944513 - MLT1I LTR MaLR -20 389 289 756 252 67 10 chrX 28030251 28030472 -148943668 - MIR SINE MIR -6 256 25 2844 91 65 19 chrX 28030702 28031130 -148943010 + LTR7 LTR ERV1 1 448 -2 1038 240 32 0 chrX 28031242 28031362 -148942778 - MER58A DNA MER1_type -2196 224 92 459 0 0 0 chrX 28031362 28031413 -148942727 + (CAATA)n Simple_repeat Simple_repeat 1 51 0 1038 240 32 0 chrX 28031413 28031509 -148942631 - MER58A DNA MER1_type -2328 92 1 627 317 242 9 chrX 28031606 28032073 -148942067 - L2 LINE L2 -1 3312 2745 991 233 46 13 chrX 28032862 28033208 -148940932 + LTR16A LTR ERVL 25 450 0 241 171 271 0 chrX 28033767 28033837 -148940303 + MIR SINE MIR 168 256 -6 26 50 0 0 chrX 28034658 28034698 -148939442 + AT_rich Low_complexity Low_complexity 1 40 0 1223 140 34 194 chrX 28035305 28035497 -148938643 - LTR48B LTR ERV1 0 644 563 10228 30 7 156 chrX 28035497 28037127 -148937013 - SVA Other Other 0 1386 1 1223 140 34 194 chrX 28037127 28037390 -148936750 - LTR48B LTR ERV1 -81 563 260 259 96 77 58 chrX 28037405 28037457 -148936683 - LTR48B LTR ERV1 -556 88 36 390 314 140 29 chrX 28037485 28037870 -148936270 + L1ME4a LINE L1 4607 5034 -1112 194 54 0 54 chrX 28037883 28037920 -148936220 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 860 213 0 0 chrX 28037988 28038143 -148935997 + MER58B DNA MER1_type 187 341 0 313 294 41 64 chrX 28038176 28038394 -148935746 + L1ME4a LINE L1 5173 5385 -761 2286 149 18 12 chrX 28038436 28038771 -148935369 + MER1B DNA MER1_type 1 337 0 523 291 69 51 chrX 28038787 28038915 -148935225 + L1ME4a LINE L1 5477 5601 -520 2444 67 3 0 chrX 28038915 28039212 -148934928 - AluY SINE Alu -13 298 1 523 291 69 51 chrX 28039212 28039433 -148934707 + L1ME4a LINE L1 5601 5832 -289 23 0 0 0 chrX 28039436 28039459 -148934681 + AT_rich Low_complexity Low_complexity 1 23 0 1475 158 26 84 chrX 28041498 28041808 -148932332 + AluJo SINE Alu 1 292 -20 323 299 96 69 chrX 28041817 28042121 -148932019 + L1ME4a LINE L1 5410 5733 -388 2816 105 17 7 chrX 28042121 28042530 -148931610 + L1MA2 LINE L1 5892 6304 0 323 299 96 69 chrX 28042530 28042717 -148931423 + L1ME4a LINE L1 5733 5914 -207 653 202 8 0 chrX 28043026 28043150 -148930990 - L1MA10 LINE L1 -7 6327 6203 289 162 108 0 chrX 28043231 28043305 -148930835 + L1ME4a LINE L1 6037 6118 -3 198 0 0 0 chrX 28044043 28044065 -148930075 + (TG)n Simple_repeat Simple_repeat 2 23 0 261 214 0 18 chrX 28045122 28045178 -148928962 + MIR SINE MIR 97 151 -111 1911 269 26 2 chrX 28046174 28046635 -148927505 + LTR16C LTR ERVL 2 473 -18 222 208 0 0 chrX 28046860 28046913 -148927227 + GA-rich Low_complexity Low_complexity 1 53 0 616 148 70 0 chrX 28047957 28048072 -148926068 - L2 LINE L2 0 3313 3191 658 301 78 10 chrX 28048436 28048845 -148925295 + L1M4 LINE L1 4013 4449 -1697 192 40 0 0 chrX 28048912 28048937 -148925203 + (TG)n Simple_repeat Simple_repeat 2 26 0 341 219 0 24 chrX 28049046 28049128 -148925012 + L1MC4 LINE L1 6624 6703 -1339 390 173 0 0 chrX 28050623 28050698 -148923442 + CT-rich Low_complexity Low_complexity 4 78 0 579 264 72 0 chrX 28051996 28052163 -148921977 + MIR SINE MIR 53 231 -31 1022 275 196 0 chrX 28052253 28052595 -148921545 - MLT1I LTR MaLR 0 409 1 200 348 29 0 chrX 28052718 28052787 -148921353 + L2 LINE L2 2996 3066 -206 200 234 0 0 chrX 28053603 28053650 -148920490 - L2 LINE L2 -5 3308 3262 265 368 71 64 chrX 28053701 28053997 -148920143 + L2 LINE L2 2932 3229 -43 248 329 37 0 chrX 28054209 28054291 -148919849 + MIR SINE MIR 66 150 -58 2169 239 57 10 chrX 28054368 28054861 -148919279 + MLT1G1 LTR MaLR 75 590 -5 903 251 60 32 chrX 28055599 28055807 -148918333 + MIR SINE MIR 5 223 -39 2641 148 52 2 chrX 28055807 28056213 -148917927 + MSTB LTR MaLR 1 426 0 903 251 60 32 chrX 28056213 28056255 -148917885 + MIR SINE MIR 223 262 0 949 285 69 26 chrX 28056653 28057074 -148917066 - LTR16A LTR ERVL -5 445 7 580 254 133 0 chrX 28057422 28057595 -148916545 - MIR SINE MIR -18 244 49 1191 260 62 18 chrX 28058813 28059201 -148914939 + LTR33 LTR ERVL 90 494 -27 387 296 17 9 chrX 28059203 28059318 -148914822 - MER94 DNA DNA 0 134 19 642 279 72 71 chrX 28060656 28061153 -148912987 + MLT1G3 LTR MaLR 1 588 -7 417 341 98 0 chrX 28061168 28061414 -148912726 + L3b LINE CR1 1112 1381 -202 2057 142 42 12 chrX 28061926 28062258 -148911882 - MER2 DNA MER2_type -1 343 2 275 269 120 37 chrX 28063412 28063442 -148910698 + MIR SINE MIR 119 145 -117 216 97 0 0 chrX 28063442 28063473 -148910667 + (TAA)n Simple_repeat Simple_repeat 2 32 0 275 269 120 37 chrX 28063473 28063550 -148910590 + MIR SINE MIR 145 235 -27 321 276 47 24 chrX 28063700 28063827 -148910313 + MIR SINE MIR 133 262 0 1175 296 53 42 chrX 28063935 28064391 -148909749 - LTR16B LTR ERVL 0 464 4 427 262 123 48 chrX 28064937 28065394 -148908746 - LTR48 LTR ERV1 0 739 142 23 0 0 0 chrX 28066085 28066108 -148908032 + AT_rich Low_complexity Low_complexity 1 23 0 355 308 77 6 chrX 28066328 28066497 -148907643 + L1MC4a LINE L1 5682 5862 -1946 4533 83 76 12 chrX 28066969 28067574 -148906566 - LTR9B LTR ERV1 0 644 1 180 179 0 0 chrX 28068072 28068111 -148906029 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chrX 28068157 28068179 -148905961 + AT_rich Low_complexity Low_complexity 1 22 0 341 311 84 44 chrX 28068508 28068781 -148905359 + L1MEd LINE L1 599 882 -5237 31390 112 14 59 chrX 28068827 28075298 -148898842 + L1PA7 LINE L1 12 6183 0 443 305 84 30 chrX 28075266 28075856 -148898284 + L1MEd LINE L1 936 1580 -4747 * 1363 200 56 7 chrX 28075858 28076143 -148897997 - MLT1E LTR MaLR 0 593 295 387 273 19 7 chrX 28076334 28076488 -148897652 + L1MEd LINE L1 3286 3441 -2688 672 248 96 39 chrX 28076532 28077057 -148897083 - MER34B LTR ERV1 0 585 5 1548 259 30 24 chrX 28077074 28077700 -148896440 + L1MEd LINE L1 3508 4137 -1992 1744 157 3 65 chrX 28079095 28079419 -148894721 - AluJb SINE Alu -8 304 1 235 195 0 134 chrX 28079495 28079577 -148894563 + MER91B DNA MER1_type 9 79 -111 441 0 0 0 chrX 28079908 28079957 -148894183 + (TG)n Simple_repeat Simple_repeat 2 50 0 509 199 35 115 chrX 28080121 28080347 -148893793 + MLT1D LTR MaLR 1 208 -297 3037 193 40 19 chrX 28080422 28081003 -148893137 - MLT1E LTR MaLR 0 593 1 1848 113 30 0 chrX 28081025 28081170 -148892970 + L1MA9 LINE L1 6002 6141 -171 342 0 0 0 chrX 28081170 28081208 -148892932 + (CA)n Simple_repeat Simple_repeat 1 38 0 1848 113 30 0 chrX 28081208 28081362 -148892778 + L1MA9 LINE L1 6141 6310 -2 262 355 0 0 chrX 28081369 28081431 -148892709 + MER91B DNA MER1_type 128 189 -1 294 304 39 10 chrX 28082144 28082246 -148891894 + L2 LINE L2 2911 3015 -257 232 286 11 0 chrX 28082401 28082492 -148891648 - L1MC4 LINE L1 -11 8031 7940 412 317 60 26 chrX 28082586 28082968 -148891172 - L1MC5 LINE L1 -197 7764 7370 394 233 62 27 chrX 28083004 28083150 -148890990 - L1MC4 LINE L1 -787 8066 7916 1453 257 94 15 chrX 28083309 28083764 -148890376 - LTR16C LTR ERVL 0 491 1 892 257 239 19 chrX 28083766 28084643 -148889497 - L1MC4 LINE L1 -900 7719 6843 246 281 38 50 chrX 28084643 28084773 -148889367 - L1PA8A LINE L1 -305 5826 5697 321 26 0 0 chrX 28084773 28084811 -148889329 + (TG)n Simple_repeat Simple_repeat 1 38 0 246 281 38 50 chrX 28084811 28084840 -148889300 - L1PA8A LINE L1 -434 5697 5669 348 278 110 43 chrX 28084920 28085312 -148888828 - L1MC4 LINE L1 -1945 5012 4595 * 1564 261 68 38 chrX 28085311 28085843 -148888297 + L1M4b LINE L1 29 576 -6283 2080 235 83 42 chrX 28085843 28086502 -148887638 - L1MC4 LINE L1 -5321 1538 853 278 194 16 16 chrX 28086513 28086575 -148887565 + MLT1H1 LTR MaLR 69 130 -425 622 238 108 30 chrX 28086592 28086867 -148887273 + MLT1H1 LTR MaLR 244 553 -2 1682 151 0 74 chrX 28087033 28087357 -148886783 + AluJb SINE Alu 1 300 -12 364 358 85 24 chrX 28087771 28088101 -148886039 - L1M4 LINE L1 -1220 5628 5279 309 308 62 0 chrX 28088112 28088320 -148885820 - L1M4 LINE L1 -1700 5148 4928 277 300 25 0 chrX 28088375 28088495 -148885645 - L1M3 LINE L1 -707 5476 5354 21 0 0 0 chrX 28088589 28088610 -148885530 + AT_rich Low_complexity Low_complexity 1 21 0 237 128 0 0 chrX 28088674 28088713 -148885427 + MLT1B LTR MaLR 58 96 -294 329 269 68 10 chrX 28088716 28089024 -148885116 - L1M3 LINE L1 -2929 3217 2892 420 287 34 72 chrX 28089540 28090189 -148883951 - L1M3 LINE L1 -3328 2818 2195 721 214 28 7 chrX 28091084 28091229 -148882911 - MIR SINE MIR -109 153 6 1561 201 124 45 chrX 28092363 28092831 -148881309 + MLT1D LTR MaLR 1 505 0 1810 162 43 0 chrX 28093682 28093821 -148880319 + MER46B DNA MER2_type 1 40 -2691 1858 104 0 4 chrX 28093821 28094072 -148880068 + AluSx SINE Alu 48 297 -15 1810 162 43 0 chrX 28094072 28094277 -148879863 + MER46B DNA MER2_type 40 235 -1 915 156 61 28 chrX 28094642 28094863 -148879277 - AluSg/x SINE Alu 0 351 125 319 248 8 53 chrX 28095013 28095146 -148878994 - L1M4 LINE L1 -2798 4050 3924 1996 137 7 0 chrX 28095151 28095435 -148878705 - AluSx SINE Alu -7 305 20 572 259 58 42 chrX 28097166 28097355 -148876785 - MIR SINE MIR 0 262 71 188 295 82 0 chrX 28097546 28097607 -148876533 - L2 LINE L2 -4 3268 3203 2368 84 0 19 chrX 28097673 28097982 -148876158 + AluSg SINE Alu 1 303 -7 2253 146 8 11 chrX 28098012 28098375 -148875765 + MLT1A1 LTR MaLR 4 365 0 2123 69 20 56 chrX 28098734 28099037 -148875103 - AluSc SINE Alu -10 299 8 309 263 85 8 chrX 28099077 28099195 -148874945 - L1MC5 LINE L1 -61 7900 7774 1630 234 41 31 chrX 28099216 28099755 -148874385 - L1ME2 LINE L1 -12 6152 5609 1856 123 7 18 chrX 28099891 28100176 -148873964 + AluSx SINE Alu 30 311 -1 884 235 0 14 chrX 28100401 28100618 -148873522 + L1PB4 LINE L1 5941 6154 -2 310 341 39 39 chrX 28100995 28101174 -148872966 - MER5A DNA MER1_type -7 182 4 2092 101 4 4 chrX 28102295 28102613 -148871527 + AluSc SINE Alu 6 323 0 463 279 0 48 chrX 28102784 28102931 -148871209 - MER5A DNA MER1_type -1 188 49 622 291 24 47 chrX 28102971 28103311 -148870829 + L1MDa LINE L1 2 333 -6207 2234 243 48 48 chrX 28103855 28105052 -148869088 + L1MDa LINE L1 909 2107 -4433 7986 190 18 28 chrX 28105062 28105499 -148868641 - L1M4 LINE L1 -2973 3875 3435 1908 43 0 0 chrX 28105499 28105734 -148868406 - L1PA4 LINE L1 -2 6153 5919 7986 190 18 28 chrX 28105734 28107285 -148866855 - L1M4 LINE L1 -3413 3435 1919 1956 106 4 0 chrX 28107285 28107541 -148866599 + AluSp SINE Alu 39 295 -18 7986 190 18 28 chrX 28107541 28108290 -148865850 - L1M4 LINE L1 -4929 1919 1164 383 303 28 0 chrX 28108494 28108603 -148865537 + MIR SINE MIR 127 238 -24 450 292 48 20 chrX 28109219 28109469 -148864671 - L1MC4a LINE L1 -1907 5901 5645 623 254 33 81 chrX 28109979 28110217 -148863923 - MIR SINE MIR -32 230 2 570 203 45 15 chrX 28110506 28110639 -148863501 + MIR SINE MIR 31 167 -95 2772 13 0 10 chrX 28111514 28111824 -148862316 - AluYb8 SINE Alu -11 307 1 749 230 35 11 chrX 28112536 28112659 -148861481 + MER5B DNA MER1_type 1 131 -47 279 0 0 0 chrX 28112659 28112690 -148861450 + (TG)n Simple_repeat Simple_repeat 2 32 0 749 230 35 11 chrX 28112690 28112740 -148861400 + MER5B DNA MER1_type 131 178 0 500 309 44 0 chrX 28112870 28113033 -148861107 + MIR SINE MIR 36 204 -58 533 306 105 31 chrX 28113113 28113436 -148860704 + L3 LINE CR1 665 1011 -566 1090 258 98 44 chrX 28113508 28113915 -148860225 - L2 LINE L2 0 3313 2885 724 160 37 86 chrX 28114550 28114666 -148859474 + MLT1H LTR MaLR 3 108 -441 2571 24 7 0 chrX 28114666 28114958 -148859182 - AluY SINE Alu -17 294 1 724 160 37 86 chrX 28114958 28115028 -148859112 + MLT1H LTR MaLR 108 180 -369 433 245 185 43 chrX 28115846 28116030 -148858110 - MIR SINE MIR -6 256 47 207 308 0 0 chrX 28118670 28118722 -148855418 - MIR3 SINE MIR -34 174 123 1041 131 107 94 chrX 28118885 28118935 -148855205 - L1ME1 LINE L1 -249 5917 5869 776 184 0 0 chrX 28118935 28119060 -148855080 - FLAM_A SINE Alu -8 125 1 1041 131 107 94 chrX 28119060 28119307 -148854833 - L1ME1 LINE L1 -297 5869 5616 515 263 25 0 chrX 28119307 28119425 -148854715 + MIR3 SINE MIR 43 163 -45 181 238 0 24 chrX 28119616 28119658 -148854482 + L3 LINE CR1 1523 1563 -14 2220 227 59 9 chrX 28119840 28120365 -148853775 + L1MDb LINE L1 7 557 -5852 5184 140 39 47 chrX 28120408 28121465 -148852675 + L1MD2 LINE L1 5302 6350 -9 436 220 108 65 chrX 28122281 28122513 -148851627 + LTR16A1 LTR ERVL 216 457 0 433 313 79 55 chrX 28122523 28122993 -148851147 - LTR16C LTR ERVL -9 482 2 855 234 11 6 chrX 28123428 28123603 -148850537 + MER5A DNA MER1_type 8 183 -6 783 278 70 82 chrX 28123879 28123984 -148850156 - L2 LINE L2 -11 3302 3197 351 0 0 0 chrX 28123984 28124023 -148850117 + (TG)n Simple_repeat Simple_repeat 1 39 0 783 278 70 82 chrX 28124023 28124317 -148849823 - L2 LINE L2 -116 3197 2908 22 0 0 0 chrX 28126477 28126499 -148847641 + AT_rich Low_complexity Low_complexity 1 22 0 437 214 69 0 chrX 28127027 28127158 -148846982 - MER103 DNA DNA -20 146 7 430 235 141 7 chrX 28127885 28128034 -148846106 - LTR33 LTR ERVL -6 515 347 1511 342 89 41 chrX 28128896 28129768 -148844372 + L2 LINE L2 482 1311 -2003 1422 198 86 18 chrX 28129768 28130046 -148844094 - AluJo SINE Alu -15 297 1 1511 342 89 41 chrX 28130046 28130338 -148843802 + L2 LINE L2 1311 1715 -1599 264 111 0 0 chrX 28130338 28130383 -148843757 + (CA)n Simple_repeat Simple_repeat 1 45 0 1511 342 89 41 chrX 28130383 28130502 -148843638 + L2 LINE L2 1715 1827 -1487 270 320 33 0 chrX 28130745 28130867 -148843273 + MLT1I LTR MaLR 284 409 0 707 333 66 56 chrX 28130867 28131620 -148842520 + L2 LINE L2 1830 3313 0 218 32 32 0 chrX 28132134 28132165 -148841975 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4572 176 30 19 chrX 28132373 28134529 -148839611 + L1MB7 LINE L1 3886 6173 -11 1027 161 10 0 chrX 28134558 28134751 -148839389 + L1PB1 LINE L1 6 200 -6663 9832 127 49 9 chrX 28134751 28136768 -148837372 + L1PB1 LINE L1 634 2935 -3927 438 110 96 0 chrX 28136768 28136841 -148837299 + MADE1 DNA Mariner 1 80 0 9832 127 49 9 chrX 28136841 28137720 -148836420 + L1PB1 LINE L1 2935 3777 -3085 5910 132 15 10 chrX 28137722 28138279 -148835861 + L1PB1 LINE L1 5542 6095 -772 2430 111 40 0 chrX 28138279 28138629 -148835511 + THE1B LTR MaLR 1 364 0 5910 132 15 10 chrX 28138629 28139387 -148834753 + L1PB1 LINE L1 6095 6866 -1 448 229 149 37 chrX 28139640 28139828 -148834312 + MIR SINE MIR 40 248 -14 184 162 0 54 chrX 28139795 28139832 -148834308 + L2 LINE L2 3261 3295 -18 * 22 0 0 0 chrX 28140511 28140533 -148833607 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 28140597 28140619 -148833521 + AT_rich Low_complexity Low_complexity 1 22 0 1014 212 36 40 chrX 28140872 28141146 -148832994 + MLT1D LTR MaLR 147 419 -86 3028 138 10 14 chrX 28141152 28141660 -148832480 - MLT2B2 LTR ERVL -8 507 2 525 157 0 0 chrX 28141661 28141750 -148832390 + MLT1D LTR MaLR 538 626 0 204 40 0 0 chrX 28142469 28142494 -148831646 + (CAAAG)n Simple_repeat Simple_repeat 2 26 0 264 327 140 9 chrX 28142891 28142998 -148831142 - L2 LINE L2 -11 3261 3141 292 197 41 62 chrX 28143055 28143170 -148830970 - MLT1F LTR MaLR 0 549 439 496 239 9 0 chrX 28143703 28143816 -148830324 - MLT1L LTR MaLR -384 231 118 1391 317 168 19 chrX 28143861 28144945 -148829195 - L2 LINE L2 -508 2806 1561 1979 160 0 0 chrX 28145084 28145378 -148828762 - AluJb SINE Alu -18 294 1 398 247 41 10 chrX 28145404 28145501 -148828639 - MLT1L LTR MaLR -365 250 151 344 248 41 41 chrX 28145659 28145804 -148828336 - L1ME4a LINE L1 -3 6118 5974 255 31 0 0 chrX 28145860 28145892 -148828248 + (TG)n Simple_repeat Simple_repeat 1 32 0 300 282 104 50 chrX 28146182 28146384 -148827756 - L1ME4a LINE L1 -823 5323 5111 304 303 55 28 chrX 28146387 28146641 -148827499 + MIR SINE MIR 2 262 0 38 39 0 0 chrX 28146646 28146698 -148827442 + AT_rich Low_complexity Low_complexity 1 52 0 255 250 0 0 chrX 28147212 28147272 -148826868 + (TA)n Simple_repeat Simple_repeat 2 61 0 1016 279 16 0 chrX 28147420 28147667 -148826473 + MIR SINE MIR 2 252 -10 1322 165 8 0 chrX 28148516 28148752 -148825388 - L1MB4 LINE L1 -57 6123 5886 191 246 92 0 chrX 28150009 28150074 -148824066 + L3b LINE CR1 1319 1389 -194 268 261 90 27 chrX 28150857 28150968 -148823172 + MLT1L LTR MaLR 375 492 -123 1788 120 89 17 chrX 28151491 28151782 -148822358 - AluSx SINE Alu 0 312 1 421 237 89 30 chrX 28152083 28152218 -148821922 - MLT1L LTR MaLR -375 240 98 381 285 56 32 chrX 28152687 28152855 -148821285 + MLT1H1 LTR MaLR 33 247 -302 531 205 54 3 chrX 28152935 28153114 -148821026 + MLT1H1 LTR MaLR 322 555 0 231 224 0 0 chrX 28153114 28153162 -148820978 + MER103 DNA DNA 45 92 -74 1181 243 8 46 chrX 28153790 28154009 -148820131 + LTR16A LTR ERVL 89 290 -160 1444 190 68 55 chrX 28154009 28154394 -148819746 - MLT1B LTR MaLR 0 390 1 1181 243 8 46 chrX 28154394 28154545 -148819595 + LTR16A LTR ERVL 290 445 -5 294 297 23 62 chrX 28155144 28155272 -148818868 - L2 LINE L2 -6 3307 3185 584 281 143 29 chrX 28155308 28155518 -148818622 + MIR SINE MIR 16 249 -13 329 239 0 46 chrX 28155715 28155824 -148818316 + MLT1H LTR MaLR 59 162 -387 1652 187 137 17 chrX 28155840 28155993 -148818147 + MLT1C LTR MaLR 1 134 -333 450 0 0 0 chrX 28155993 28156043 -148818097 + (CA)n Simple_repeat Simple_repeat 2 51 0 1652 187 137 17 chrX 28156043 28156306 -148817834 + MLT1C LTR MaLR 134 467 0 317 229 62 78 chrX 28157758 28158002 -148816138 - L1ME4a LINE L1 -1 6120 5881 190 348 11 22 chrX 28158531 28158620 -148815520 - L2 LINE L2 -334 2938 2851 1328 251 75 70 chrX 28159160 28160750 -148813390 + L1MC5 LINE L1 5522 7114 -847 808 223 41 38 chrX 28160790 28161081 -148813059 + L1MC5 LINE L1 7106 7397 -564 1221 251 21 6 chrX 28161084 28161406 -148812734 + MSTD LTR MaLR 1 327 -69 1193 194 97 19 chrX 28161406 28161726 -148812414 + MER2 DNA MER2_type 1 345 0 354 197 0 0 chrX 28161726 28161797 -148812343 + MSTD LTR MaLR 326 396 0 726 231 155 39 chrX 28161798 28162210 -148811930 + L1MC5 LINE L1 7398 7857 -104 811 227 19 34 chrX 28163676 28163710 -148810430 - MLT1E1 LTR MaLR -46 608 575 2181 153 19 6 chrX 28163710 28164069 -148810071 + MLT1A1 LTR MaLR 2 365 0 811 227 19 34 chrX 28164069 28164241 -148809899 - MLT1E1 LTR MaLR -79 575 405 400 188 136 3 chrX 28164296 28164458 -148809682 - MLT1E1 LTR MaLR -391 263 32 1601 216 27 2 chrX 28164473 28164876 -148809264 + L1M4 LINE L1 4448 4860 -1286 275 0 0 28 chrX 28164951 28164987 -148809153 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7170 57 7 19 chrX 28164987 28166605 -148807535 - SVA Other Other -756 1367 1 404 132 123 38 chrX 28166616 28166722 -148807418 - L1MCa LINE L1 -4504 1922 1808 1220 222 170 6 chrX 28166723 28167228 -148806912 - L1MDa LINE L1 -2952 3128 2541 820 239 0 11 chrX 28167233 28167421 -148806719 - MLT1A2 LTR MaLR 0 374 189 241 176 74 0 chrX 28167426 28167482 -148806658 - MLT1A2 LTR MaLR -322 52 1 2606 244 68 45 chrX 28167498 28168287 -148805853 - L1MDa LINE L1 -3563 2517 1748 2034 115 58 33 chrX 28168287 28168651 -148805489 - THE1C LTR MaLR 0 375 3 2606 244 68 45 chrX 28168651 28169787 -148804353 - L1MDa LINE L1 -4332 1748 548 264 100 0 0 chrX 28169805 28169845 -148804295 + (TC)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chrX 28169848 28169876 -148804264 + (TG)n Simple_repeat Simple_repeat 1 28 0 343 312 7 65 chrX 28169884 28170022 -148804118 - L1MDa LINE L1 -5557 513 384 371 285 57 44 chrX 28170119 28170277 -148803863 - L1MDa LINE L1 -5590 480 321 289 226 49 20 chrX 28170457 28170559 -148803581 - L1MDa LINE L1 -5902 168 64 1441 266 12 12 chrX 28171098 28171501 -148802639 + MLT1I LTR MaLR 7 409 0 945 242 40 8 chrX 28172187 28172439 -148801701 - MIR SINE MIR -1 261 2 784 272 10 0 chrX 28172467 28172662 -148801478 + MER58A DNA MER1_type 1 197 -27 419 63 0 101 chrX 28172948 28172964 -148801176 - L1MA2 LINE L1 0 6304 6288 2321 110 128 16 chrX 28172964 28173347 -148800793 + MSTA LTR MaLR 1 426 -2 419 63 0 101 chrX 28173347 28173409 -148800731 - L1MA2 LINE L1 -16 6288 6234 1162 153 10 5 chrX 28174284 28174486 -148799654 - L1PA13 LINE L1 -11 6152 5950 5320 137 19 14 chrX 28174861 28176238 -148797902 - L1PA13 LINE L1 -4 6159 4771 1458 88 0 9 chrX 28176268 28176484 -148797656 - L1MA4A LINE L1 0 6303 6090 243 146 0 0 chrX 28176484 28176525 -148797615 + (TA)n Simple_repeat Simple_repeat 2 42 0 1579 191 10 26 chrX 28176583 28176887 -148797253 + AluJo SINE Alu 1 299 -13 1290 260 54 38 chrX 28176992 28177419 -148796721 - MLT1C LTR MaLR 0 467 34 285 270 152 13 chrX 28177647 28178108 -148796032 + L1ME LINE L1 5107 5641 -529 226 342 44 0 chrX 28178133 28178291 -148795849 + L1ME LINE L1 5747 5911 -255 223 333 45 9 chrX 28178523 28178626 -148795514 + L3b LINE CR1 1265 1371 -212 325 368 51 0 chrX 28178626 28178743 -148795397 + MIR3 SINE MIR 3 125 -83 308 230 58 0 chrX 28178744 28178831 -148795309 - MER69 DNA AcHobo -2336 190 99 555 156 10 10 chrX 28179362 28179458 -148794682 + MER69 DNA AcHobo 547 642 -584 * 1694 185 52 29 chrX 28179456 28179860 -148794280 + MER69 DNA AcHobo 2038 2456 -70 1739 116 0 4 chrX 28179860 28180118 -148794022 - L1PA15 LINE L1 0 6165 5909 1694 185 52 29 chrX 28180118 28180189 -148793951 + MER69 DNA AcHobo 2456 2524 -2 289 259 36 45 chrX 28180429 28180541 -148793599 - MIR SINE MIR 0 262 152 1021 196 95 86 chrX 28180761 28181317 -148792823 + MLT2F LTR ERVL 1 663 0 1421 243 64 106 chrX 28181608 28182204 -148791936 + MLT1G1 LTR MaLR 1 571 -24 2301 251 54 0 chrX 28182239 28182601 -148791539 - MLT1F1 LTR MaLR 0 567 165 180 0 0 0 chrX 28182601 28182621 -148791519 + (GA)n Simple_repeat Simple_repeat 1 20 0 2301 251 54 0 chrX 28182621 28182796 -148791344 - MLT1F1 LTR MaLR -402 165 1 1275 165 29 0 chrX 28183551 28183793 -148790347 - L1MB5 LINE L1 0 6174 5926 607 130 43 65 chrX 28183793 28183931 -148790209 + L1MB5 LINE L1 5794 5928 -246 * 4215 228 115 32 chrX 28183930 28184896 -148789244 - L1M4 LINE L1 -2161 4483 3599 2018 142 7 0 chrX 28184896 28185191 -148788949 - AluSx SINE Alu -15 297 1 4215 228 115 32 chrX 28185191 28185901 -148788239 - L1M4 LINE L1 -3045 3599 2661 915 98 0 0 chrX 28185910 28186043 -148788097 - L1MA1 LINE L1 0 6302 6170 296 47 23 0 chrX 28186046 28186089 -148788051 - MER57B LTR ERV1 0 434 391 8169 144 23 41 chrX 28186089 28187729 -148786411 + L1PA8A LINE L1 3 1622 -4738 22591 111 8 19 chrX 28187733 28191318 -148782822 + L1PA8A LINE L1 2141 5683 -763 2296 109 0 0 chrX 28191318 28191621 -148782519 + AluSg SINE Alu 3 305 -5 22591 111 8 19 chrX 28191621 28192377 -148781763 + L1PA8A LINE L1 5683 6445 -1 348 43 0 0 chrX 28192386 28192432 -148781708 + (CA)n Simple_repeat Simple_repeat 1 46 0 2892 104 7 0 chrX 28192433 28192836 -148781304 - MER57B LTR ERV1 -26 408 3 5025 84 6 3 chrX 28192838 28193532 -148780608 - L1MA2 LINE L1 -132 6172 5477 4010 244 58 32 chrX 28193527 28195007 -148779133 - L1M4 LINE L1 -3967 2678 765 * 2094 126 134 11 chrX 28195007 28195388 -148778752 - MSTA LTR MaLR 0 428 1 4010 244 58 32 chrX 28195388 28196174 -148777966 - L1M4 LINE L1 -5880 765 1 526 299 107 34 chrX 28196199 28196433 -148777707 - MIR SINE MIR -8 254 4 828 279 21 13 chrX 28196842 28197083 -148777057 + MIR SINE MIR 15 260 -2 1839 159 35 0 chrX 28197784 28198098 -148776042 - L1MC1 LINE L1 0 6333 6009 182 176 274 0 chrX 28198274 28198325 -148775815 - MIR SINE MIR -62 146 82 295 352 50 60 chrX 28198363 28198644 -148775496 - L2 LINE L2 -2 3270 2993 2010 181 20 50 chrX 28199281 28199722 -148774418 - MSTB1 LTR MaLR -4 428 1 310 309 53 73 chrX 28199749 28199995 -148774145 + MLT1H LTR MaLR 84 324 -225 649 292 50 92 chrX 28200818 28201321 -148772819 + MLT1K LTR MaLR 99 580 -8 686 272 83 23 chrX 28201561 28201778 -148772362 + MIR SINE MIR 10 239 -23 312 274 90 9 chrX 28201998 28202120 -148772020 - MIR SINE MIR -70 138 19 188 268 0 0 chrX 28202126 28202167 -148771973 + L2 LINE L2 3148 3188 -84 267 31 0 0 chrX 28202196 28202228 -148771912 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 856 282 104 27 chrX 28202245 28202728 -148771412 - MLT1G LTR MaLR -2 593 19 264 310 52 39 chrX 28205487 28205642 -148768498 + L2 LINE L2 2244 2400 -914 3286 162 2 0 chrX 28205695 28206270 -148767870 - L1P LINE L1 -1662 4484 3909 3829 98 7 0 chrX 28206270 28206820 -148767320 + L1PA13 LINE L1 5609 6163 0 276 316 0 0 chrX 28206842 28206918 -148767222 + L2 LINE L2 2708 2783 -531 1122 94 0 20 chrX 28206936 28207085 -148767055 + AluSq/x SINE Alu 1 146 -167 407 59 8 4 chrX 28207122 28207194 -148766946 - MLT2A1 LTR ERVL 0 444 393 23 0 0 0 chrX 28207194 28207217 -148766923 + AT_rich Low_complexity Low_complexity 1 23 0 9872 154 36 0 chrX 28207217 28209840 -148764300 + L1PA12 LINE L1 3523 6168 0 349 250 78 26 chrX 28209899 28210015 -148764125 - MIR SINE MIR -16 246 125 1464 155 48 3 chrX 28210968 28211277 -148762863 + MER33 DNA MER1_type 1 323 -1 24 0 0 0 chrX 28212228 28212252 -148761888 + AT_rich Low_complexity Low_complexity 1 24 0 7520 224 65 21 chrX 28212296 28215244 -148758896 - L1ME1 LINE L1 -17 6149 3072 5518 91 0 44 chrX 28215258 28215625 -148758515 - L1PA8A LINE L1 -13 6118 5737 2541 58 0 6 chrX 28215625 28215938 -148758202 - AluY SINE Alu 0 311 1 5518 91 0 44 chrX 28215938 28216393 -148757747 - L1PA8A LINE L1 -394 5737 5332 14797 97 4 1 chrX 28216393 28219298 -148754842 - L1PA7 LINE L1 -1 6153 3240 22873 127 12 83 chrX 28219298 28223773 -148750367 - L1PA8A LINE L1 -1989 4157 1 635 123 35 0 chrX 28223788 28223902 -148750238 - L1P LINE L1 -803 5343 5226 3433 121 2 0 chrX 28223906 28224434 -148749706 + L1P LINE L1 4675 5203 -943 215 149 0 21 chrX 28224493 28224540 -148749600 + (TA)n Simple_repeat Simple_repeat 1 46 0 310 208 0 0 chrX 28224546 28224618 -148749522 - L1ME1 LINE L1 -3143 3003 2932 * 6963 239 54 32 chrX 28224615 28227242 -148746898 - L1MEc LINE L1 -1688 4527 1864 809 179 56 6 chrX 28227270 28227449 -148746691 - MER4A-int LTR ERV1 -5656 1102 915 4126 103 7 14 chrX 28227474 28228094 -148746046 - MER4A-int LTR ERV1 -5946 812 198 1118 242 94 11 chrX 28228108 28228459 -148745681 - MER4A-int LTR ERV1 -4107 2224 1845 2580 103 146 14 chrX 28228584 28229133 -148745007 - MER4A-int LTR ERV1 -5912 686 1 1722 110 6 88 chrX 28229136 28229455 -148744685 - MER4A LTR ERV1 0 664 372 591 96 43 11 chrX 28229483 28229577 -148744563 - MER4A LTR ERV1 -567 97 1 1286 213 89 3 chrX 28229843 28229921 -148744219 - MER2 DNA MER2_type 0 345 275 3584 167 22 48 chrX 28229921 28230663 -148743477 + MER72 LTR ERV1 1 722 0 1286 213 89 3 chrX 28230663 28230898 -148743242 - MER2 DNA MER2_type -70 275 5 296 270 61 26 chrX 28231433 28231548 -148742592 + MIR SINE MIR 14 132 -130 2400 153 35 31 chrX 28231550 28232032 -148742108 + MER110 LTR ERV1 1 484 -7 225 261 14 14 chrX 28232032 28232101 -148742039 + MIR3 SINE MIR 132 200 -8 669 98 27 0 chrX 28232282 28232394 -148741746 + L1MB3 LINE L1 6062 6176 -7 5553 174 21 28 chrX 28233630 28234677 -148739463 - MER45B DNA AcHobo 0 1040 1 483 293 48 7 chrX 28235341 28235488 -148738652 - MIR SINE MIR -87 175 23 560 229 114 44 chrX 28236549 28236916 -148737224 + LTR16C LTR ERVL 62 491 0 809 147 0 0 chrX 28237037 28237180 -148736960 - L1P LINE L1 -1080 5066 4924 6697 75 6 3 chrX 28237195 28238258 -148735882 + L1PA10 LINE L1 5104 6168 0 433 344 6 18 chrX 28241241 28241404 -148732736 - L2 LINE L2 -188 3084 2924 544 244 16 0 chrX 28241504 28241627 -148732513 - L2 LINE L2 0 3313 3189 328 313 0 55 chrX 28241632 28241760 -148732380 - L2 LINE L2 -508 2806 2686 289 277 36 0 chrX 28242556 28242639 -148731501 + MLT1I LTR MaLR 63 148 -261 435 198 11 0 chrX 28242753 28242844 -148731296 + MLT1I LTR MaLR 318 409 0 231 218 23 11 chrX 28243818 28243905 -148730235 + (TA)n Simple_repeat Simple_repeat 1 88 0 495 0 0 0 chrX 28244424 28244479 -148729661 + (TC)n Simple_repeat Simple_repeat 1 55 0 342 0 0 0 chrX 28244478 28244516 -148729624 + (CA)n Simple_repeat Simple_repeat 1 38 0 * 319 354 29 34 chrX 28244625 28244834 -148729306 - MLT1K LTR MaLR -207 381 174 185 312 101 9 chrX 28245179 28245288 -148728852 + MIR SINE MIR 97 215 -47 853 99 19 62 chrX 28245465 28245627 -148728513 - THE1C LTR MaLR 0 375 221 348 367 79 0 chrX 28245661 28245890 -148728250 + L3 LINE CR1 338 584 -993 2629 46 15 3 chrX 28246098 28246427 -148727713 - L1PA7 LINE L1 0 6154 5822 986 164 56 23 chrX 28246441 28246655 -148727485 - THE1C LTR MaLR -154 221 1 10264 116 8 22 chrX 28246655 28248254 -148725886 - THE1C-int LTR MaLR 0 1580 4 1961 126 40 37 chrX 28248257 28248631 -148725509 - THE1C LTR MaLR 0 375 1 964 261 74 37 chrX 28249142 28249548 -148724592 - LTR16A LTR ERVL -13 437 17 1898 188 9 47 chrX 28249785 28249884 -148724256 - MER96B DNA MER1_type? 0 417 316 2183 154 32 14 chrX 28249884 28250318 -148723822 + L1MA4 LINE L1 5859 6300 0 1898 188 9 47 chrX 28250318 28250644 -148723496 - MER96B DNA MER1_type? -101 316 8 388 259 38 30 chrX 28250718 28250849 -148723291 + L2 LINE L2 2501 2632 -682 415 175 24 63 chrX 28250888 28251014 -148723126 - L1M4 LINE L1 -1048 5098 4978 481 305 85 26 chrX 28251188 28251780 -148722360 - L1ME LINE L1 -416 5754 5112 2190 96 20 0 chrX 28251780 28252073 -148722067 - AluSq SINE Alu -14 299 1 481 305 85 26 chrX 28252073 28252162 -148721978 - L1ME LINE L1 -1058 5112 5030 28 48 0 0 chrX 28252236 28252278 -148721862 + AT_rich Low_complexity Low_complexity 1 42 0 623 261 130 10 chrX 28252580 28252787 -148721353 + MIR SINE MIR 31 262 0 226 188 12 47 chrX 28253270 28253355 -148720785 + (TATAA)n Simple_repeat Simple_repeat 1 82 0 633 245 155 7 chrX 28253552 28253707 -148720433 + MER5A DNA MER1_type 6 183 -6 1162 158 0 5 chrX 28254295 28254479 -148719661 + MER5A DNA MER1_type 7 189 0 565 308 22 22 chrX 28254513 28254695 -148719445 + MIR3 SINE MIR 8 189 -19 244 323 0 42 chrX 28255228 28255324 -148718816 + L2 LINE L2 2873 2964 -349 1976 199 115 35 chrX 28256502 28257076 -148717064 + MLT1E3 LTR MaLR 5 624 0 394 299 118 68 chrX 28257611 28257624 -148716516 - L2 LINE L2 -688 2626 2615 1129 211 42 5 chrX 28257624 28257837 -148716303 - MER58A DNA MER1_type 0 224 4 394 299 118 68 chrX 28257837 28258061 -148716079 - L2 LINE L2 -699 2615 2404 267 31 0 0 chrX 28258061 28258093 -148716047 + (TG)n Simple_repeat Simple_repeat 2 33 0 394 299 118 68 chrX 28258093 28258204 -148715936 - L2 LINE L2 -910 2404 2300 183 42 0 0 chrX 28258204 28258228 -148715912 + (GA)n Simple_repeat Simple_repeat 1 24 0 394 299 118 68 chrX 28258228 28258318 -148715822 - L2 LINE L2 -1014 2300 2164 2095 266 11 21 chrX 28258914 28259134 -148715006 - MLT1H1 LTR MaLR 0 555 334 2034 177 0 5 chrX 28259134 28259501 -148714639 - MLT1A1 LTR MaLR 0 365 1 2095 266 11 21 chrX 28259501 28259841 -148714299 - MLT1H1 LTR MaLR -221 334 1 578 327 45 36 chrX 28259972 28260308 -148713832 - LTR16C LTR ERVL -10 481 143 1313 159 30 4 chrX 28260321 28260554 -148713586 - L1PA16 LINE L1 -16 6150 5912 388 246 148 113 chrX 28261760 28262346 -148711794 - MLT1L LTR MaLR -6 609 3 423 347 24 18 chrX 28262354 28262521 -148711619 + MIR3 SINE MIR 37 204 -4 242 292 0 0 chrX 28263014 28263079 -148711061 + L2 LINE L2 3208 3272 0 1377 275 71 43 chrX 28263278 28264242 -148709898 - L2 LINE L2 -5 3308 2315 331 77 19 0 chrX 28265355 28265407 -148708733 + MADE1 DNA Mariner 28 80 0 287 209 164 9 chrX 28265412 28265522 -148708618 - MER112 DNA MER1_type -83 177 51 451 363 60 12 chrX 28265550 28265798 -148708342 + MIR SINE MIR 2 261 -1 4084 220 30 16 chrX 28266354 28268306 -148705834 - L1MB7 LINE L1 0 6184 4201 4844 224 42 25 chrX 28268317 28269578 -148704562 + L1M4 LINE L1 13 1295 -5247 1033 120 0 6 chrX 28269578 28269736 -148704404 + Tigger1 DNA MER2_type 1 157 -2261 * 1276 115 29 5 chrX 28269728 28269936 -148704204 + Tigger1 DNA MER2_type 2205 2417 -1 1473 149 122 0 chrX 28269939 28270275 -148703865 + L1M4 LINE L1 1291 1667 -4979 6666 234 38 10 chrX 28270280 28271708 -148702432 - L1MB7 LINE L1 -1933 4213 2713 1728 180 127 29 chrX 28271708 28272124 -148702016 - MSTB2 LTR MaLR 0 457 1 6666 234 38 10 chrX 28272124 28272706 -148701434 - L1MB7 LINE L1 -3433 2713 2148 1890 221 15 17 chrX 28272703 28272909 -148701231 - L1MD2 LINE L1 -3 6356 6151 * 222 62 0 0 chrX 28272909 28272941 -148701199 + (TG)n Simple_repeat Simple_repeat 1 32 0 1890 221 15 17 chrX 28272941 28273213 -148700927 - L1MD2 LINE L1 -208 6151 5879 596 176 10 0 chrX 28273225 28273327 -148700813 - U6 snRNA snRNA -4 103 1 2606 241 55 54 chrX 28273328 28273748 -148700392 - L1M4c LINE L1 -4127 2698 2280 2353 81 3 0 chrX 28273748 28274046 -148700094 - AluSx SINE Alu -13 299 1 2606 241 55 54 chrX 28274046 28274944 -148699196 - L1M4c LINE L1 -4545 2280 1248 783 121 60 0 chrX 28274944 28275093 -148699047 - L1MA4 LINE L1 -6 6294 6137 2606 241 55 54 chrX 28275093 28275410 -148698730 - L1M4c LINE L1 -5577 1248 933 560 275 96 28 chrX 28275546 28275797 -148698343 - L1M4c LINE L1 -5667 875 608 335 388 61 0 chrX 28275919 28276066 -148698074 - L1M4c LINE L1 -6021 525 370 452 253 28 6 chrX 28276114 28276296 -148697844 - L1M4c LINE L1 -6341 201 16 240 278 111 0 chrX 28278320 28278410 -148695730 + MIR SINE MIR 53 152 -110 204 286 16 0 chrX 28278680 28278743 -148695397 + (CA)n Simple_repeat Simple_repeat 1 64 0 507 189 67 67 chrX 28279223 28279387 -148694753 + MER112 DNA MER1_type 2 165 -95 1039 261 91 39 chrX 28279419 28279631 -148694509 + MLT1J2 LTR MaLR 21 221 -229 1720 196 25 11 chrX 28279631 28279988 -148694152 + MLT1A1 LTR MaLR 4 365 0 1039 261 91 39 chrX 28279988 28280181 -148693959 + MLT1J2 LTR MaLR 221 447 -3 476 273 31 0 chrX 28280333 28280461 -148693679 + MER94 DNA DNA 1 132 -2 242 233 116 23 chrX 28280498 28280584 -148693556 + MER5C DNA MER1_type 227 320 -4 311 106 0 0 chrX 28281588 28281635 -148692505 + MER5B DNA MER1_type 130 176 -2 449 219 168 13 chrX 28281658 28281813 -148692327 - MER5A DNA MER1_type -2 187 9 1510 177 17 128 chrX 28282054 28282461 -148691679 - MLT1A1 LTR MaLR -1 364 3 1744 214 73 12 chrX 28282705 28283130 -148691010 - LTR37B LTR ERV1 0 468 18 21 36 0 0 chrX 28283394 28283422 -148690718 + AT_rich Low_complexity Low_complexity 1 28 0 343 197 45 0 chrX 28284554 28284620 -148689520 - U3 snRNA snRNA -145 72 4 225 135 0 0 chrX 28284617 28284654 -148689486 + Tigger7 DNA MER2_type 2 38 -512 * 256 143 95 16 chrX 28284630 28284693 -148689447 + Tigger7 DNA MER2_type 2520 2587 0 400 305 30 36 chrX 28284913 28285080 -148689060 + MIR3 SINE MIR 5 170 -38 1731 215 84 42 chrX 28285107 28285632 -148688508 + MLT1G LTR MaLR 27 573 -17 185 237 0 0 chrX 28287408 28287446 -148686694 - L2 LINE L2 -21 3292 3255 209 149 0 170 chrX 28288320 28288435 -148685705 + MIR SINE MIR 113 202 -60 195 42 0 0 chrX 28288640 28288664 -148685476 + (CATA)n Simple_repeat Simple_repeat 1 24 0 2446 82 3 0 chrX 28288686 28288991 -148685149 + AluSp SINE Alu 1 306 -7 1456 199 76 8 chrX 28289132 28289514 -148684626 - L1ME1 LINE L1 -4 6162 5755 1043 267 92 69 chrX 28289551 28289941 -148684199 + MER115 DNA AcHobo 2 400 -293 607 308 11 5 chrX 28290106 28290291 -148683849 - MIR3 SINE MIR -3 205 20 972 204 38 12 chrX 28290305 28290545 -148683595 - Charlie2 DNA MER1_type 0 2862 2617 19452 168 5 12 chrX 28290552 28295139 -148679001 - L1PA13 LINE L1 -19 6795 2239 6919 120 27 15 chrX 28295139 28296197 -148677943 - MER11C LTR ERVK 0 1071 1 8138 54 8 14 chrX 28296197 28297200 -148676940 - HERVK11 LTR ERVK 0 7953 6957 * 9550 49 8 1 chrX 28297185 28298367 -148675773 - HERVK11 LTR ERVK -1186 6767 5525 1912 47 0 4 chrX 28298365 28298599 -148675541 - HERVK11 LTR ERVK -3352 4601 4369 * 14287 150 20 6 chrX 28298599 28300782 -148673358 - L1PA13 LINE L1 -4573 2214 1 493 241 69 6 chrX 28300789 28300963 -148673177 - Charlie2 DNA MER1_type -230 2632 2448 211 219 0 0 chrX 28300990 28301031 -148673109 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 1040 242 76 70 chrX 28301066 28301748 -148672392 - L2 LINE L2 0 3313 2628 2253 165 23 29 chrX 28301752 28302147 -148671993 + MLT2B1 LTR ERVL 1 375 -39 309 109 0 0 chrX 28302147 28302193 -148671947 + (TG)n Simple_repeat Simple_repeat 2 47 0 2253 165 23 29 chrX 28302193 28302231 -148671909 + MLT2B1 LTR ERVL 375 412 -2 1574 251 58 36 chrX 28302267 28302734 -148671406 + LTR33 LTR ERVL 39 515 -6 1446 231 164 24 chrX 28302739 28303159 -148670981 - MLT1G1 LTR MaLR -8 587 109 570 189 98 33 chrX 28303206 28303293 -148670847 - L2 LINE L2 -685 2629 2549 2701 131 14 32 chrX 28303293 28303735 -148670405 - Tigger2a DNA MER2_type 0 434 1 570 189 98 33 chrX 28303735 28303800 -148670340 - L2 LINE L2 -765 2549 2467 1154 330 55 9 chrX 28303800 28304237 -148669903 - LTR16B LTR ERVL 0 464 8 862 275 5 0 chrX 28304244 28304455 -148669685 - L2 LINE L2 -843 2471 2260 1284 174 112 114 chrX 28304482 28304893 -148669247 - Charlie2 DNA MER1_type -462 2400 1989 1825 171 3 14 chrX 28304893 28305185 -148668955 - AluJb SINE Alu -23 289 1 1284 174 112 114 chrX 28305185 28305263 -148668877 - Charlie2 DNA MER1_type -873 1989 1912 670 260 108 28 chrX 28305307 28305557 -148668583 - Charlie2 DNA MER1_type -2474 308 39 224 289 95 16 chrX 28306150 28306284 -148667856 + MIR SINE MIR 20 165 -61 7225 50 2 0 chrX 28306779 28308075 -148666065 - L1PA7 LINE L1 0 6154 4862 881 65 0 0 chrX 28308075 28308182 -148665958 - U6 snRNA snRNA 0 107 1 302 311 33 50 chrX 28308194 28308374 -148665766 - L1ME LINE L1 -392 5729 5553 371 307 50 0 chrX 28308539 28308679 -148665461 + MIR SINE MIR 2 148 -114 403 241 57 51 chrX 28309484 28309516 -148664624 - MIR SINE MIR -27 235 205 2494 139 27 27 chrX 28309516 28309925 -148664215 + LTR57 LTR ERVL 3 411 0 403 241 57 51 chrX 28309925 28310050 -148664090 - MIR SINE MIR -57 205 77 201 154 0 51 chrX 28311118 28311157 -148662983 + L2 LINE L2 3243 3279 -34 356 237 180 71 chrX 28311193 28311476 -148662664 - MLT1J LTR MaLR -143 368 55 2362 167 58 16 chrX 28311489 28311937 -148662203 - MLT1C LTR MaLR 0 467 1 1384 253 90 43 chrX 28311959 28312468 -148661672 + MLT1H1 LTR MaLR 23 555 0 591 239 15 8 chrX 28313429 28313559 -148660581 + MIR SINE MIR 14 144 -118 1067 228 57 111 chrX 28313559 28313894 -148660246 + MLT1G LTR MaLR 1 312 -283 3428 196 8 39 chrX 28313906 28314573 -148659567 - MER82 DNA MER2_type -6 647 2 282 238 40 50 chrX 28314641 28314742 -148659398 + MLT1G LTR MaLR 367 466 -76 330 340 58 13 chrX 28315014 28315170 -148658970 - MIR3 SINE MIR -3 205 43 2786 119 16 23 chrX 28316841 28317276 -148656864 - MSTB1 LTR MaLR 0 432 1 432 0 0 0 chrX 28317582 28317630 -148656510 + (TG)n Simple_repeat Simple_repeat 1 48 0 461 186 20 10 chrX 28317710 28317812 -148656328 + MER5A DNA MER1_type 86 188 -1 1966 159 25 22 chrX 28318388 28318752 -148655388 + MLT1A1 LTR MaLR 1 365 0 1722 250 129 28 chrX 28319871 28320452 -148653688 - MLT2F LTR ERVL 0 663 24 408 287 67 13 chrX 28321268 28321418 -148652722 - MIR3 SINE MIR -2 206 49 1127 144 16 5 chrX 28323499 28323686 -148650454 + MER5A DNA MER1_type 1 189 0 188 258 65 0 chrX 28323771 28323833 -148650307 + L2 LINE L2 2912 2977 -336 2245 54 0 25 chrX 28323878 28324155 -148649985 + AluY SINE Alu 41 310 -1 201 293 0 43 chrX 28324159 28324275 -148649865 + L2 LINE L2 3127 3237 -76 1488 237 94 82 chrX 28324660 28325189 -148648951 - L2 LINE L2 -18 3295 2774 2338 96 3 0 chrX 28325189 28325482 -148648658 - AluSp SINE Alu -11 302 9 1488 237 94 82 chrX 28325482 28325628 -148648512 - L2 LINE L2 -539 2774 2631 226 226 0 48 chrX 28325628 28325690 -148648450 - L1M2b LINE L1 -6040 1169 1111 1488 237 94 82 chrX 28325690 28325946 -148648194 - L2 LINE L2 -682 2631 2285 182 171 24 0 chrX 28326626 28326667 -148647473 + (TA)n Simple_repeat Simple_repeat 2 43 0 2389 157 80 9 chrX 28326699 28327125 -148647015 + MLT1D LTR MaLR 48 503 -2 563 301 8 37 chrX 28327127 28327373 -148646767 - MIR SINE MIR -21 241 3 201 195 24 0 chrX 28327507 28327548 -148646592 + L2 LINE L2 3265 3306 -7 1995 119 34 91 chrX 28328414 28328800 -148645340 - THE1B LTR MaLR 0 364 1 755 298 70 32 chrX 28329161 28329634 -148644506 - LTR16C LTR ERVL 0 491 1 188 179 51 0 chrX 28330704 28330743 -148643397 - L2 LINE L2 0 3313 3273 226 286 155 0 chrX 28331361 28331445 -148642695 - MIR SINE MIR -164 98 2 5041 138 31 10 chrX 28331690 28332475 -148641665 - L1MA7 LINE L1 0 6291 5483 2329 94 0 0 chrX 28332475 28332772 -148641368 - AluSg SINE Alu -13 297 1 5041 138 31 10 chrX 28332772 28332900 -148641240 - L1MA7 LINE L1 -808 5483 5359 1610 134 123 0 chrX 28334752 28335013 -148639127 - AluSx SINE Alu -19 293 1 307 286 54 9 chrX 28335083 28335195 -148638945 - L1MC4 LINE L1 -2 8040 7924 888 138 26 20 chrX 28335784 28335936 -148638204 + L1PB4 LINE L1 5998 6150 -6 40733 34 23 1 chrX 28335960 28341980 -148632160 - L1PA3 LINE L1 0 6155 2 295 164 55 0 chrX 28343158 28343213 -148630927 + L2 LINE L2 3210 3267 -5 952 266 94 80 chrX 28343976 28344161 -148629979 + LTR16C LTR ERVL 37 218 -273 2563 55 3 3 chrX 28344161 28344472 -148629668 - AluY SINE Alu 0 311 1 952 266 94 80 chrX 28344472 28344710 -148629430 + LTR16C LTR ERVL 218 466 -25 297 0 0 0 chrX 28344752 28344785 -148629355 + (CA)n Simple_repeat Simple_repeat 2 34 0 543 252 8 0 chrX 28344785 28344904 -148629236 + Tigger3(Golem) DNA MER2_type 3 122 -2907 * 3909 124 57 19 chrX 28344881 28345605 -148628535 + Tigger3(Golem) DNA MER2_type 2277 3027 -2 403 255 19 19 chrX 28346370 28346476 -148627664 - MIR3 SINE MIR -25 183 78 1146 188 40 29 chrX 28346844 28347116 -148627024 - ORSL DNA AcHobo 0 275 1 1924 158 7 77 chrX 28347150 28347567 -148626573 - MLT1B LTR MaLR -2 388 1 275 344 58 13 chrX 28349020 28349174 -148624966 - MER5A DNA MER1_type -28 161 1 509 72 0 0 chrX 28349853 28349922 -148624218 - Alu SINE Alu -7 305 237 221 261 0 46 chrX 28350170 28350235 -148623905 - L2 LINE L2 -18 3254 3193 359 292 10 109 chrX 28350369 28350571 -148623569 - L3b LINE CR1 -256 1327 1146 554 267 55 9 chrX 28350679 28350879 -148623261 + MIR SINE MIR 4 210 -52 307 312 54 6 chrX 28351236 28351386 -148622754 + MER5A DNA MER1_type 2 162 -16 559 248 106 0 chrX 28351407 28351568 -148622572 - MER5A DNA MER1_type -11 178 1 2004 127 6 32 chrX 28352109 28352455 -148621685 - L1MC1 LINE L1 0 6333 5997 1457 243 86 41 chrX 28353734 28354220 -148619920 - MLT1J LTR MaLR -3 508 1 1217 188 104 33 chrX 28354429 28354822 -148619318 + LTR37A LTR ERV1 6 426 0 525 274 102 28 chrX 28354970 28355185 -148618955 - MIR SINE MIR 0 262 32 311 203 72 0 chrX 28355450 28355519 -148618621 + MIR SINE MIR 17 90 -118 228 147 40 53 chrX 28355545 28355602 -148618538 - MIR SINE MIR -63 145 96 231 308 177 15 chrX 28355705 28355835 -148618305 + MIR3 SINE MIR 37 187 -21 10912 158 14 14 chrX 28355851 28356276 -148617864 - L1MA4A LINE L1 -27 6276 5852 288 0 0 0 chrX 28356276 28356308 -148617832 + (TA)n Simple_repeat Simple_repeat 2 33 0 10912 158 14 14 chrX 28356308 28358917 -148615223 - L1MA4A LINE L1 -451 5852 3182 467 86 49 0 chrX 28358917 28358998 -148615142 + MER4B-int LTR ERV1 1101 1185 -5573 4225 74 47 11 chrX 28359011 28359717 -148614423 + MER4B-int LTR ERV1 1764 2494 -4104 1236 168 71 0 chrX 28359717 28359955 -148614185 - LTR8 LTR ERV1 -433 258 4 3595 119 101 53 chrX 28359958 28360858 -148613282 + MER4-int LTR ERV1 2737 3679 -2919 3504 103 56 22 chrX 28360862 28361465 -148612675 + MER4-int LTR ERV1 3840 4463 -2135 350 152 0 15 chrX 28361465 28361531 -148612609 - AluS SINE Alu -10 290 226 200 108 0 54 chrX 28362032 28362069 -148612071 + L2 LINE L2 3278 3312 -1 1598 177 107 0 chrX 28362450 28362777 -148611363 + L1MB5 LINE L1 5679 6040 -134 312 27 0 0 chrX 28362992 28363029 -148611111 + (CTA)n Simple_repeat Simple_repeat 2 38 0 3482 124 30 82 chrX 28363029 28363757 -148610383 - LTR8 LTR ERV1 -1 690 1 388 222 33 11 chrX 28363986 28364076 -148610064 + MIR3 SINE MIR 76 167 -41 980 280 25 6 chrX 28364234 28364548 -148609592 - MER102b DNA MER1_type -21 320 1 1943 348 53 28 chrX 28364674 28366250 -148607890 - L2 LINE L2 0 3313 1699 231 356 138 31 chrX 28366504 28366889 -148607251 + L2 LINE L2 2552 2977 -337 291 250 78 62 chrX 28367121 28367249 -148606891 + L2 LINE L2 3143 3272 0 2300 110 0 3 chrX 28367354 28367664 -148606476 + AluSx SINE Alu 1 309 -3 2809 189 73 22 chrX 28368103 28368785 -148605355 + L1ME3 LINE L1 5445 6161 -1 2277 92 10 0 chrX 28368903 28369207 -148604933 - AluY SINE Alu -4 307 1 306 146 0 0 chrX 28369833 28369881 -148604259 - HAL1 LINE L1 -17 2490 2443 942 198 107 4 chrX 28369936 28370178 -148603962 + LTR16C LTR ERVL 224 490 -1 445 297 23 36 chrX 28371090 28371309 -148602831 - MLT1J LTR MaLR -8 503 288 566 227 87 12 chrX 28371361 28371533 -148602607 - MLT1J LTR MaLR -317 194 10 285 75 0 0 chrX 28371826 28371866 -148602274 + (CA)n Simple_repeat Simple_repeat 1 40 0 536 318 80 49 chrX 28371893 28372258 -148601882 - L2 LINE L2 -67 3246 2871 2345 105 0 0 chrX 28372376 28372671 -148601469 - AluSg SINE Alu -15 295 1 310 217 0 0 chrX 28372971 28373040 -148601100 + MLT1H1 LTR MaLR 1 69 -486 1174 225 0 4 chrX 28373043 28373287 -148600853 + MLT1H1 LTR MaLR 304 546 -9 6965 177 27 29 chrX 28373479 28373677 -148600463 + MST-int LTR MaLR 1 198 -1453 2198 144 0 0 chrX 28373677 28373989 -148600151 + AluSx SINE Alu 1 312 0 6965 177 27 29 chrX 28373989 28375160 -148598980 + MST-int LTR MaLR 198 1368 -283 1287 190 4 8 chrX 28375160 28375397 -148598743 + MSTB LTR MaLR 191 426 0 744 172 0 23 chrX 28376060 28376188 -148597952 - FLAM_C SINE Alu -8 125 1 279 289 78 56 chrX 28376193 28376340 -148597800 + MIR SINE MIR 59 210 -52 277 333 0 0 chrX 28376455 28376527 -148597613 - MIR3 SINE MIR -40 168 97 482 328 116 18 chrX 28376699 28377028 -148597112 + L2 LINE L2 2487 2847 -467 392 294 102 32 chrX 28377295 28377482 -148596658 + L2 LINE L2 3109 3308 -5 481 298 120 31 chrX 28377933 28378158 -148595982 - MIR SINE MIR -8 254 10 1894 151 21 18 chrX 28378206 28378544 -148595596 + MER44D DNA MER2_type 1 609 0 272 264 128 80 chrX 28378724 28378849 -148595291 + L2 LINE L2 3142 3272 0 1314 185 50 7 chrX 28379592 28379894 -148594246 + LTR16C LTR ERVL 168 482 -9 1791 190 14 19 chrX 28379896 28380260 -148593880 - MLT1A1 LTR MaLR 0 365 4 304 275 81 47 chrX 28382587 28382736 -148591404 + MIR SINE MIR 96 249 -13 3567 90 2 0 chrX 28382807 28383298 -148590842 - L1PA13 LINE L1 -4 6159 5668 26 50 0 0 chrX 28383321 28383361 -148590779 + AT_rich Low_complexity Low_complexity 1 40 0 5432 129 14 4 chrX 28383367 28384685 -148589455 - L1PA13 LINE L1 -489 5679 4347 387 97 125 0 chrX 28384893 28384965 -148589175 - MER53 DNA DNA -108 81 1 501 286 65 69 chrX 28385311 28385797 -148588343 - LTR67 LTR ERVL -3 554 6 240 35 0 0 chrX 28386390 28386419 -148587721 + (CA)n Simple_repeat Simple_repeat 2 30 0 323 190 13 0 chrX 28386695 28386774 -148587366 - MER33 DNA MER1_type -3 360 281 2810 227 26 5 chrX 28386779 28387560 -148586580 + L1MC1 LINE L1 4536 5332 -814 10251 224 13 42 chrX 28387560 28390170 -148583970 + L1PA16 LINE L1 1881 4436 -1710 309 0 0 0 chrX 28390170 28390214 -148583926 + AluY SINE Alu 258 301 0 10251 224 13 42 chrX 28390214 28390603 -148583537 + L1PA16 LINE L1 4436 4835 -1311 5868 115 6 7 chrX 28390610 28391642 -148582498 + L1PA16 LINE L1 5144 6157 -9 5940 137 13 14 chrX 28392071 28392914 -148581226 + L1MC1 LINE L1 5302 6148 -185 2667 116 81 0 chrX 28392914 28393310 -148580830 + MSTA LTR MaLR 1 428 0 5940 137 13 14 chrX 28393310 28393494 -148580646 + L1MC1 LINE L1 6148 6331 -2 1121 197 32 0 chrX 28393498 28393747 -148580393 - MER33 DNA MER1_type -67 257 1 268 320 50 0 chrX 28393807 28393907 -148580233 - MER5C DNA MER1_type -218 106 2 21 36 0 0 chrX 28394214 28394242 -148579898 + AT_rich Low_complexity Low_complexity 1 28 0 1366 154 136 84 chrX 28394889 28395061 -148579079 + MLT1B LTR MaLR 1 163 -227 2367 72 3 0 chrX 28395061 28395354 -148578786 + AluY SINE Alu 1 294 -17 1366 154 136 84 chrX 28395354 28395550 -148578590 + MLT1B LTR MaLR 163 388 -2 201 333 0 0 chrX 28396148 28396175 -148577965 - MIR3 SINE MIR -6 202 176 2196 154 70 7 chrX 28396175 28396578 -148577562 + MSTA LTR MaLR 1 428 0 201 333 0 0 chrX 28396578 28396616 -148577524 - MIR3 SINE MIR -31 177 137 411 347 21 34 chrX 28396740 28396979 -148577161 - MIR SINE MIR -6 256 21 785 297 42 25 chrX 28397090 28397444 -148576696 + LTR16A LTR ERVL 25 384 -66 431 301 48 14 chrX 28398353 28398569 -148575571 + L1ME LINE L1 5552 5729 -392 235 203 31 0 chrX 28398575 28398639 -148575501 + L1ME LINE L1 5817 5882 -239 2294 84 7 3 chrX 28398813 28399111 -148575029 - AluY SINE Alu -12 299 1 1867 157 32 35 chrX 28399922 28400323 -148573817 + L1MA4 LINE L1 5898 6297 -3 402 167 2 0 chrX 28400459 28400532 -148573608 + MLT1H LTR MaLR 17 133 -416 488 226 188 6 chrX 28400538 28400719 -148573421 + MLT1H1 LTR MaLR 335 548 -7 284 174 0 29 chrX 28400744 28400813 -148573327 + GA-rich Low_complexity Low_complexity 2 68 0 329 373 102 13 chrX 28400851 28401165 -148572975 - L2 LINE L2 -337 2977 2636 468 216 36 58 chrX 28401267 28401406 -148572734 - MLT1G LTR MaLR -44 546 411 463 272 79 22 chrX 28401625 28401853 -148572287 - MLT1G1 LTR MaLR -238 352 112 569 206 14 21 chrX 28401896 28402037 -148572103 + MLT1H LTR MaLR 151 290 -259 549 218 32 0 chrX 28402089 28402232 -148571908 - MLT1G1 LTR MaLR -442 144 7 1441 142 161 0 chrX 28402378 28402632 -148571508 + AluJo SINE Alu 1 295 -17 1947 149 3 3 chrX 28402781 28403077 -148571063 + AluJb SINE Alu 1 296 -16 422 254 145 7 chrX 28403285 28403423 -148570717 - MIR SINE MIR -1 261 105 221 263 38 38 chrX 28403513 28403593 -148570547 - MIR SINE MIR -171 91 12 353 283 21 35 chrX 28403726 28403871 -148570269 - L2 LINE L2 -850 2464 2322 518 248 8 8 chrX 28403990 28404107 -148570033 - MIR3 SINE MIR -5 203 87 709 268 79 48 chrX 28405547 28405887 -148568253 + MLT1J2 LTR MaLR 53 403 -47 813 162 71 30 chrX 28405887 28406084 -148568056 - LTR52 LTR ERVL -3 418 214 4536 219 49 20 chrX 28406090 28407162 -148566978 - LTR52-int LTR ERVL -202 3354 2251 2493 199 35 0 chrX 28407293 28407801 -148566339 - LTR52-int LTR ERVL -3589 2096 1571 563 226 26 89 chrX 28408885 28409068 -148565072 + MIR SINE MIR 11 182 -55 997 133 6 24 chrX 28409884 28410050 -148564090 + AluSg/x SINE Alu 124 286 -26 1456 210 35 46 chrX 28410140 28410534 -148563606 + MLT1B LTR MaLR 1 395 -1 2059 125 46 55 chrX 28410587 28410954 -148563186 - THE1B LTR MaLR 0 364 1 22 0 0 0 chrX 28411594 28411616 -148562524 + AT_rich Low_complexity Low_complexity 1 22 0 752 156 9 120 chrX 28411639 28411864 -148562276 + MER58C DNA MER1_type 9 208 -7 3236 107 0 0 chrX 28412250 28412717 -148561423 + L1PA14 LINE L1 5695 6161 0 435 324 66 90 chrX 28413069 28413693 -148560447 + L1MC4a LINE L1 5305 5913 -1895 2223 120 0 19 chrX 28413718 28414034 -148560106 + AluSx SINE Alu 1 310 -2 2408 69 0 7 chrX 28414523 28414829 -148559311 - AluY SINE Alu -7 304 1 2560 48 7 0 chrX 28415033 28415342 -148558798 + AluY SINE Alu 1 311 0 1687 237 24 19 chrX 28416234 28416699 -148557441 + MLT1C LTR MaLR 1 467 0 4939 258 58 23 chrX 28418507 28420624 -148553516 + L1M4b LINE L1 2 2415 -4544 315 331 48 36 chrX 28420781 28421085 -148553055 + L1M4b LINE L1 2410 2719 -4240 1878 234 36 19 chrX 28421097 28421818 -148552322 + L1M4b LINE L1 2775 3506 -3451 * 3501 123 7 26 chrX 28421815 28422606 -148551534 + L1PA12 LINE L1 5271 6019 -149 2146 143 3 11 chrX 28422374 28422745 -148551395 + L1PB1 LINE L1 5783 6150 -1 * 183 80 0 0 chrX 28422817 28422842 -148551298 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 745 243 27 57 chrX 28422908 28423171 -148550969 - LTR16A1 LTR ERVL -3 454 200 316 271 0 0 chrX 28423374 28423444 -148550696 - L2 LINE L2 0 3272 3203 478 273 44 66 chrX 28423546 28423729 -148550411 + MIR SINE MIR 69 247 -15 239 182 0 0 chrX 28424032 28424076 -148550064 + LTR67 LTR ERVL 129 172 -385 243 270 153 9 chrX 28424217 28424328 -148549812 + MIR SINE MIR 126 252 -10 228 86 0 0 chrX 28425488 28425523 -148548617 + (CACAT)n Simple_repeat Simple_repeat 1 35 0 187 327 96 65 chrX 28425686 28425885 -148548255 - L2 LINE L2 -375 2939 2735 2244 109 0 3 chrX 28425913 28426215 -148547925 + AluSx SINE Alu 1 301 -11 188 288 68 0 chrX 28426369 28426428 -148547712 + L2 LINE L2 3210 3272 0 239 215 47 103 chrX 28427888 28427995 -148546145 + MLT1J LTR MaLR 84 184 -327 2390 152 23 23 chrX 28428019 28428448 -148545692 + MSTB1 LTR MaLR 1 429 -3 2530 65 0 3 chrX 28429264 28429571 -148544569 + AluY SINE Alu 4 309 -2 356 178 14 14 chrX 28430343 28430416 -148543724 + MER21B LTR ERV1 667 739 -124 874 134 0 0 chrX 28430487 28430614 -148543526 + FLAM_C SINE Alu 1 127 -16 2034 203 88 103 chrX 28430641 28431390 -148542750 + MER21B LTR ERV1 2 739 -124 1678 161 15 7 chrX 28431461 28431735 -148542405 + AluSx SINE Alu 1 276 -36 459 248 85 0 chrX 28431904 28432033 -148542107 - MLT1J2 LTR MaLR -310 140 1 289 271 75 53 chrX 28432193 28432326 -148541814 - L2 LINE L2 -1 3271 3136 2203 86 31 0 chrX 28433275 28433566 -148540574 + AluSg SINE Alu 1 300 -10 24 0 0 0 chrX 28434416 28434440 -148539700 + AT_rich Low_complexity Low_complexity 1 24 0 302 190 32 11 chrX 28434704 28434799 -148539341 + L1ME1 LINE L1 5860 5959 -207 618 290 42 28 chrX 28434825 28435282 -148538858 - L1ME3A LINE L1 -274 5896 5437 * 1043 224 107 13 chrX 28435281 28435580 -148538560 + L1ME2 LINE L1 5828 6154 -10 2171 96 0 17 chrX 28435617 28435919 -148538221 - AluSc SINE Alu -12 297 1 925 276 66 19 chrX 28435934 28435983 -148538157 - L1ME3A LINE L1 -728 5442 5397 1353 202 99 72 chrX 28435983 28436428 -148537712 + LTR16A1 LTR ERVL 1 457 0 925 276 66 19 chrX 28436428 28436987 -148537153 - L1ME3A LINE L1 -773 5397 4805 555 245 148 14 chrX 28436967 28437183 -148536957 - L1ME3A LINE L1 -2314 3832 3588 * 680 280 135 5 chrX 28437784 28437991 -148536149 + MLT1I LTR MaLR 114 347 -62 339 314 62 21 chrX 28438300 28438494 -148535646 + L2 LINE L2 3112 3313 0 410 302 125 16 chrX 28439509 28439701 -148534439 - L2 LINE L2 -593 2721 2509 5806 110 11 38 chrX 28440234 28441060 -148533080 - L1PA16 LINE L1 -4 6162 5360 6882 29 0 1 chrX 28441060 28441867 -148532273 + L1PA5 LINE L1 5344 6149 -5 5806 110 11 38 chrX 28441867 28442048 -148532092 - L1PA16 LINE L1 -806 5360 5176 203 0 0 36 chrX 28442048 28442076 -148532064 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 42552 38 21 1 chrX 28442076 28448093 -148526047 - L1PA3 LINE L1 -13 6142 1 4715 195 4 3 chrX 28448099 28449052 -148525088 - L1PA16 LINE L1 -961 5185 4232 180 200 0 50 chrX 28449052 28449092 -148525048 + L2 LINE L2 3022 3059 -254 2092 117 0 17 chrX 28449146 28449446 -148524694 - AluSc SINE Alu -14 295 1 237 65 0 0 chrX 28449446 28449477 -148524663 + (T)n Simple_repeat Simple_repeat 1 31 0 32 0 0 0 chrX 28449513 28449545 -148524595 + AT_rich Low_complexity Low_complexity 1 32 0 2893 128 47 2 chrX 28449740 28450234 -148523906 + L1MA9 LINE L1 5797 6312 0 1586 166 8 8 chrX 28450576 28450835 -148523305 + AluJo SINE Alu 1 259 -53 597 261 116 5 chrX 28451973 28452180 -148521960 + LTR16C LTR ERVL 262 491 0 296 180 33 131 chrX 28452308 28452368 -148521772 - MER103 DNA DNA -47 119 75 2202 120 0 3 chrX 28452368 28452668 -148521472 + AluSp SINE Alu 2 300 -13 296 180 33 131 chrX 28452668 28452729 -148521411 - MER103 DNA DNA -91 75 10 356 316 39 64 chrX 28453721 28454003 -148520137 + L1MC/D LINE L1 736 1010 -6112 248 233 41 0 chrX 28454563 28454657 -148519483 + L1MC/D LINE L1 1367 1468 -4955 21 57 0 0 chrX 28454718 28454753 -148519387 + AT_rich Low_complexity Low_complexity 1 35 0 606 293 153 20 chrX 28454768 28455468 -148518672 + L1MC/D LINE L1 1721 2513 -4428 1838 156 40 0 chrX 28455588 28455864 -148518276 + AluJo SINE Alu 3 289 -23 4099 188 59 11 chrX 28455976 28456845 -148517295 - L1MB8 LINE L1 0 6989 6080 1221 178 99 8 chrX 28456845 28457087 -148517053 + Tigger7 DNA MER2_type 1 264 -469 605 176 0 0 chrX 28457092 28457183 -148516957 + Tigger7 DNA MER2_type 2390 2480 -7 1225 215 155 3 chrX 28457191 28457558 -148516582 - L1MB8 LINE L1 -874 6083 5661 3620 227 25 7 chrX 28457572 28458584 -148515556 - L1MB8 LINE L1 -2965 3992 2963 4854 234 127 17 chrX 28458589 28460134 -148514006 - L1MB8 LINE L1 -5028 1827 121 318 233 128 11 chrX 28460213 28460393 -148513747 + L1MC/D LINE L1 2819 3019 -4103 315 217 19 9 chrX 28460405 28460465 -148513675 - L1M LINE L1 -816 5362 5303 6332 137 19 4 chrX 28460465 28461877 -148512263 - L1MA4 LINE L1 -1 6299 4866 5534 137 17 2 chrX 28461906 28462805 -148511335 + L1MA5 LINE L1 5387 6298 -2 2669 255 74 17 chrX 28462830 28463954 -148510186 + L1MC/D LINE L1 3010 4159 -2782 327 257 127 87 chrX 28463952 28464205 -148509935 + L1MC/D LINE L1 6358 6620 -1983 * 5763 138 34 14 chrX 28464291 28465451 -148508689 - L1MA8 LINE L1 -4 6287 5106 207 0 0 0 chrX 28465451 28465474 -148508666 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2345 75 0 0 chrX 28465476 28465756 -148508384 - AluSg SINE Alu -30 280 1 4543 123 25 0 chrX 28465756 28466487 -148507653 - L1MA8 LINE L1 -1430 4716 3968 378 0 0 0 chrX 28466518 28466560 -148507580 + (TG)n Simple_repeat Simple_repeat 1 42 0 555 50 0 12 chrX 28466675 28466755 -148507385 + L1MA1 LINE L1 6222 6300 -2 27 0 0 0 chrX 28466756 28466783 -148507357 + AT_rich Low_complexity Low_complexity 1 27 0 448 189 44 0 chrX 28467877 28467967 -148506173 + L2 LINE L2 2434 2527 -787 3244 209 24 16 chrX 28467967 28468672 -148505468 + L1ME1 LINE L1 5389 6099 -67 1081 286 117 3 chrX 28468672 28468800 -148505340 + L2 LINE L2 2574 2686 -627 180 0 0 0 chrX 28468800 28468820 -148505320 + (CATAT)n Simple_repeat Simple_repeat 5 24 0 1081 286 117 3 chrX 28468820 28469078 -148505062 + L2 LINE L2 2686 3005 -308 243 378 30 7 chrX 28469064 28469199 -148504941 + L2 LINE L2 2722 2859 -455 * 308 238 4 0 chrX 28469358 28469425 -148504715 + MER5A DNA MER1_type 110 189 0 296 229 0 0 chrX 28469498 28469559 -148504581 + L2 LINE L2 3203 3263 -9 1561 250 65 26 chrX 28471076 28471568 -148502572 + MLT1J LTR MaLR 1 511 0 1782 248 82 90 chrX 28472007 28472198 -148501942 + L1MC4 LINE L1 6971 7162 -880 2164 161 77 17 chrX 28472198 28472601 -148501539 + MSTA LTR MaLR 1 427 -1 1782 248 82 90 chrX 28472601 28472709 -148501431 + L1MC4 LINE L1 7162 7269 -773 1327 59 0 0 chrX 28472709 28472878 -148501262 - L1PA8 LINE L1 -3 6169 6001 1782 248 82 90 chrX 28472878 28473625 -148500515 + L1MC4 LINE L1 7269 8010 -32 1560 346 44 20 chrX 28474611 28475354 -148498786 + L2 LINE L2 2151 2911 -403 514 273 0 9 chrX 28475404 28475514 -148498626 + L2 LINE L2 3121 3229 -43 25 31 0 0 chrX 28475621 28475653 -148498487 + AT_rich Low_complexity Low_complexity 1 32 0 301 265 39 34 chrX 28475812 28476054 -148498086 - L1MEc LINE L1 -3756 2402 2141 609 319 115 35 chrX 28476428 28476908 -148497232 - HAL1b LINE L1 -740 608 91 4653 88 0 3 chrX 28477175 28477812 -148496328 - L1PA13 LINE L1 0 6163 5529 768 296 47 19 chrX 28478835 28479152 -148494988 + MARNA DNA Mariner 248 573 -13 2373 213 104 26 chrX 28479298 28479922 -148494218 + LTR50 LTR ERVL 1 673 -122 2241 161 77 23 chrX 28479928 28480369 -148493771 + MLT1C LTR MaLR 3 467 0 241 89 67 0 chrX 28480393 28480438 -148493702 + LTR50 LTR ERVL 712 759 -36 714 129 0 2 chrX 28480438 28480672 -148493468 + AluSx SINE Alu 1 283 -27 292 109 65 0 chrX 28480679 28480725 -148493415 + LTR50 LTR ERVL 746 794 -1 * 372 156 0 16 chrX 28480725 28480786 -148493354 - LTR16C LTR ERVL -8 483 424 595 113 72 0 chrX 28480786 28480883 -148493257 - L1PBa LINE L1 -6157 706 603 2919 179 30 9 chrX 28480886 28481445 -148492695 - L1PBa LINE L1 -6292 571 1 1247 254 121 0 chrX 28481488 28481803 -148492337 - LTR16C LTR ERVL -54 437 85 350 200 92 85 chrX 28481810 28481940 -148492200 + LTR50 LTR ERVL 360 490 -305 2382 83 0 7 chrX 28482128 28482428 -148491712 + AluSg SINE Alu 1 298 -12 2079 201 67 62 chrX 28484454 28484490 -148489650 - MLT1G LTR MaLR 0 590 556 2259 188 140 19 chrX 28484490 28484914 -148489226 + MLT2B1 LTR ERVL 1 487 -33 195 42 0 0 chrX 28484914 28484938 -148489202 + (CA)n Simple_repeat Simple_repeat 1 24 0 2259 188 140 19 chrX 28484938 28484977 -148489163 + MLT2B1 LTR ERVL 487 520 0 2079 201 67 62 chrX 28484977 28485565 -148488575 - MLT1G LTR MaLR -34 556 1 2012 206 73 55 chrX 28485699 28486258 -148487882 - MLT1E2 LTR MaLR -57 569 1 4730 164 55 19 chrX 28486298 28487202 -148486938 - L1MB4 LINE L1 -1 6179 5211 1531 230 18 44 chrX 28487202 28487268 -148486872 - MLT1A2 LTR MaLR -1 373 307 1848 146 28 7 chrX 28487268 28487556 -148486584 + AluJb SINE Alu 1 294 -18 1531 230 18 44 chrX 28487556 28487872 -148486268 - MLT1A2 LTR MaLR -67 307 1 4730 164 55 19 chrX 28487872 28488253 -148485887 - L1MB4 LINE L1 -969 5211 4845 306 234 16 0 chrX 28488672 28488736 -148485404 - L2 LINE L2 0 3313 3249 268 267 80 0 chrX 28489054 28489129 -148485011 - L2 LINE L2 -40 3273 3193 443 301 23 8 chrX 28489159 28489292 -148484848 - MIR3 SINE MIR -71 137 3 2547 37 7 0 chrX 28489526 28489824 -148484316 + AluY SINE Alu 1 300 -11 229 381 51 8 chrX 28489961 28490079 -148484061 + MIR3 SINE MIR 37 159 -49 2226 113 0 0 chrX 28490092 28490393 -148483747 + AluSx SINE Alu 1 301 -11 598 277 20 29 chrX 28490825 28491005 -148483135 - MIR SINE MIR -11 251 74 250 301 94 62 chrX 28491089 28491345 -148482795 + MLT1H LTR MaLR 144 407 -142 240 298 35 0 chrX 28492096 28492153 -148481987 - L2 LINE L2 -1 3271 3213 202 188 0 94 chrX 28492573 28492637 -148481503 + MIR SINE MIR 84 141 -67 234 311 115 22 chrX 28492639 28492825 -148481315 + L1P3 LINE L1 5724 5925 -243 490 270 103 25 chrX 28492834 28493038 -148481102 - MIR SINE MIR -11 251 32 1378 207 78 81 chrX 28493142 28493664 -148480476 - MER113 DNA MER1_type? 0 521 1 198 256 0 0 chrX 28493877 28493920 -148480220 - MIR SINE MIR -1 261 219 742 170 254 0 chrX 28494017 28494182 -148479958 - MIR SINE MIR -54 208 2 359 297 34 5 chrX 28495956 28496160 -148477980 + LTR16A LTR ERVL 1 204 -260 1888 216 75 24 chrX 28496162 28496670 -148477470 - L2 LINE L2 -496 2818 2285 397 319 64 38 chrX 28496795 28497061 -148477079 + L2 LINE L2 2357 2629 -685 2595 87 22 33 chrX 28497381 28497749 -148476391 + THE1B LTR MaLR 1 364 0 548 317 103 24 chrX 28497871 28498212 -148475928 + L2 LINE L2 2946 3313 0 313 214 13 138 chrX 28498931 28499090 -148475050 - MIR SINE MIR -62 200 62 29 70 0 0 chrX 28500758 28500815 -148473325 + AT_rich Low_complexity Low_complexity 1 57 0 1977 194 138 79 chrX 28501625 28502243 -148471897 - MLT1E1 LTR MaLR 0 654 1 412 382 44 0 chrX 28502353 28502581 -148471559 - MIR SINE MIR -6 256 19 2190 101 0 36 chrX 28502831 28503139 -148471001 - AluSp SINE Alu -16 297 1 272 139 0 0 chrX 28503207 28503250 -148470890 + MLT1E3 LTR MaLR 582 624 0 947 261 33 45 chrX 28503369 28503459 -148470681 + L1MC4a LINE L1 5648 5738 -2070 2212 123 0 7 chrX 28503459 28503767 -148470373 + AluSx SINE Alu 1 306 -6 947 261 33 45 chrX 28503767 28504009 -148470131 + L1MC4a LINE L1 5738 5976 -1832 276 30 0 0 chrX 28504059 28504092 -148470048 + (CA)n Simple_repeat Simple_repeat 2 34 0 1232 299 48 8 chrX 28506319 28506693 -148467447 - LTR16C LTR ERVL -1 490 102 1130 289 25 33 chrX 28507049 28507533 -148466607 + L1MC4a LINE L1 5506 5985 -1823 1012 309 91 9 chrX 28507784 28508134 -148466006 + LTR16C LTR ERVL 89 467 -24 281 327 0 42 chrX 28508146 28508244 -148465896 - MIR SINE MIR -36 172 81 367 231 13 0 chrX 28508244 28508322 -148465818 - MER116 DNA Mariner -1 79 1 281 327 0 42 chrX 28508322 28508356 -148465784 - MIR SINE MIR -127 81 47 499 276 167 19 chrX 28508456 28508666 -148465474 + MIR SINE MIR 9 249 -13 1121 78 0 46 chrX 28508719 28508872 -148465268 - L1PA10 LINE L1 -1 6167 6022 481 225 94 31 chrX 28508872 28509032 -148465108 - MLT1K LTR MaLR -19 569 400 2237 123 80 3 chrX 28509357 28509730 -148464410 - L1MC2 LINE L1 0 6344 5943 749 264 143 18 chrX 28510797 28511126 -148463014 - LTR16A LTR ERVL -80 370 1 2502 60 3 0 chrX 28511260 28511559 -148462581 + AluY SINE Alu 1 300 -11 2316 103 0 0 chrX 28512013 28512324 -148461816 - AluY SINE Alu 0 311 1 916 211 60 0 chrX 28512556 28512722 -148461418 + MER45A DNA AcHobo 1 176 -2 764 214 48 7 chrX 28513102 28513247 -148460893 + FRAM SINE Alu 1 146 -30 216 260 20 0 chrX 28513411 28513461 -148460679 + L2 LINE L2 3186 3236 -36 1998 160 72 62 chrX 28513597 28514097 -148460043 + MLT1D LTR MaLR 1 505 0 222 327 47 0 chrX 28514148 28514255 -148459885 + L3b LINE CR1 1247 1358 -225 1305 264 109 17 chrX 28514923 28515400 -148458740 - LTR33 LTR ERVL 0 521 1 620 336 143 22 chrX 28515443 28515998 -148458142 + L2 LINE L2 2627 3252 -20 2071 121 16 3 chrX 28516729 28517035 -148457105 - AluSx SINE Alu -2 310 1 2338 79 30 3 chrX 28517713 28518016 -148456124 - AluSq SINE Alu 0 313 3 431 337 45 6 chrX 28518646 28518824 -148455316 + MIR SINE MIR 12 196 -66 24 32 0 0 chrX 28518827 28518858 -148455282 + AT_rich Low_complexity Low_complexity 1 31 0 350 82 82 154 chrX 28518859 28518909 -148455231 - L1MB2 LINE L1 -3 6168 6129 1895 183 0 3 chrX 28518909 28519221 -148454919 - AluJo SINE Alu -1 311 1 350 82 82 154 chrX 28519221 28519280 -148454860 - L1MB2 LINE L1 -42 6129 6067 * 3946 150 54 39 chrX 28519274 28520422 -148453718 - L1MB2 LINE L1 -192 5979 4826 422 336 98 0 chrX 28520426 28520548 -148453592 + L2 LINE L2 3133 3266 -6 195 309 0 48 chrX 28520539 28520623 -148453517 + MIR SINE MIR 183 262 0 * 690 274 35 20 chrX 28520779 28520976 -148453164 + MIR SINE MIR 51 250 -12 261 286 48 0 chrX 28522055 28522139 -148452001 - L2 LINE L2 0 3313 3226 308 264 0 42 chrX 28522199 28522271 -148451869 - L2 LINE L2 0 3313 3245 754 287 107 87 chrX 28522549 28523099 -148451041 + MLT1K LTR MaLR 21 581 -7 2108 143 64 20 chrX 28523192 28523550 -148450590 - L1PB4 LINE L1 -2 6154 5781 231 300 17 0 chrX 28523764 28523824 -148450316 - MER5A DNA MER1_type 0 189 129 1033 71 0 0 chrX 28523826 28523953 -148450187 + AluSp/q SINE Alu 173 299 -14 373 248 0 80 chrX 28523954 28524067 -148450073 - MER5A DNA MER1_type -55 134 31 783 228 100 52 chrX 28524087 28524390 -148449750 - LTR16A1 LTR ERVL 0 457 157 218 403 67 49 chrX 28524772 28525177 -148448963 + L2 LINE L2 2812 3223 -49 2049 93 0 0 chrX 28525768 28526026 -148448114 + AluSq SINE Alu 1 258 -55 494 263 104 109 chrX 28526102 28526505 -148447635 + MLT1L LTR MaLR 111 615 0 24 32 0 0 chrX 28527642 28527673 -148446467 + AT_rich Low_complexity Low_complexity 1 31 0 54 40 0 0 chrX 28529149 28529224 -148444916 + GC_rich Low_complexity Low_complexity 1 75 0 207 0 0 0 chrX 28530589 28530612 -148443528 + (T)n Simple_repeat Simple_repeat 1 23 0 1964 113 36 36 chrX 28530938 28531328 -148442812 - MER3 DNA MER1_type 0 2624 2235 622 133 0 0 chrX 28531337 28531435 -148442705 - MER3 DNA MER1_type -87 122 72 231 250 0 0 chrX 28532388 28532436 -148441704 + (CCCA)n Simple_repeat Simple_repeat 2 49 0 411 225 112 0 chrX 28533137 28533226 -148440914 + U6 snRNA snRNA 7 105 -2 222 375 125 0 chrX 28533255 28533391 -148440749 + L2 LINE L2 3116 3268 -4 608 292 6 11 chrX 28533486 28533664 -148440476 + MER5B DNA MER1_type 2 178 0 324 191 43 61 chrX 28535171 28535264 -148438876 - MIR SINE MIR -32 176 81 2095 101 27 20 chrX 28536288 28536456 -148437684 - AluSx SINE Alu -13 299 134 294 29 0 0 chrX 28536456 28536491 -148437649 + (TG)n Simple_repeat Simple_repeat 2 36 0 1839 80 42 49 chrX 28536491 28536777 -148437363 - AluY SINE Alu -27 284 1 2095 101 27 20 chrX 28536777 28536904 -148437236 - AluSx SINE Alu -177 135 1 613 241 28 0 chrX 28538942 28539083 -148435057 + MIR SINE MIR 71 215 -47 1023 24 0 0 chrX 28539127 28539250 -148434890 - L1PA4 LINE L1 -3 6152 6030 240 236 73 0 chrX 28539500 28539555 -148434585 + MIR SINE MIR 90 148 -60 230 73 24 0 chrX 28539654 28539695 -148434445 + (TA)n Simple_repeat Simple_repeat 1 42 0 719 164 0 0 chrX 28539715 28539831 -148434309 - FLAM_C SINE Alu -27 116 1 2189 137 0 0 chrX 28539878 28540191 -148433949 + AluSq SINE Alu 1 313 0 371 145 81 0 chrX 28540209 28540271 -148433869 + AluJ/FRAM SINE Alu 223 289 -13 886 29 0 0 chrX 28540289 28540393 -148433747 - L1PA7 LINE L1 -205 5949 5846 1689 51 0 14 chrX 28540393 28540607 -148433533 + L1PA7 LINE L1 5941 6154 0 26 0 0 0 chrX 28541341 28541367 -148432773 + AT_rich Low_complexity Low_complexity 1 26 0 268 241 0 81 chrX 28542106 28542193 -148431947 + MIR SINE MIR 118 197 -65 2247 113 0 0 chrX 28542252 28542543 -148431597 - AluSx SINE Alu -19 293 3 1994 120 27 7 chrX 28542827 28543128 -148431012 + AluSx SINE Alu 1 307 -5 960 178 32 11 chrX 28543501 28543686 -148430454 + MER5A DNA MER1_type 1 189 0 985 223 37 0 chrX 28543702 28543917 -148430223 + MER58A DNA MER1_type 1 223 -1 198 0 0 0 chrX 28544338 28544360 -148429780 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1759 94 23 43 chrX 28544360 28544616 -148429524 - AluSx SINE Alu -33 279 29 2260 121 0 29 chrX 28544636 28544983 -148429157 + MER1B DNA MER1_type 1 337 0 408 298 29 0 chrX 28546435 28546539 -148427601 + L2 LINE L2 3199 3305 -8 254 318 64 9 chrX 28546870 28546980 -148427160 + MIR SINE MIR 100 215 -47 333 95 143 0 chrX 28547121 28547184 -148426956 - MER3 DNA MER1_type -12 197 126 2754 157 25 0 chrX 28547185 28547655 -148426485 + L1MB7 LINE L1 5336 5817 -361 2763 137 67 2 chrX 28547664 28548125 -148426015 + L1PA15 LINE L1 5675 6165 0 1153 211 93 6 chrX 28548129 28548494 -148425646 - L1M4 LINE L1 -1570 4576 4180 1866 172 11 16 chrX 28548494 28548871 -148425269 + L1MB7 LINE L1 5810 6184 0 807 171 8 0 chrX 28548871 28549000 -148425140 - MER3 DNA MER1_type -79 130 1 226 247 43 54 chrX 28549131 28549224 -148424916 - MIR SINE MIR -42 220 129 494 215 39 23 chrX 28549989 28550072 -148424068 - HAL1 LINE L1 -775 1732 1645 2205 148 132 20 chrX 28550072 28550526 -148423614 + MLT1D LTR MaLR 1 505 0 494 215 39 23 chrX 28550526 28550572 -148423568 - HAL1 LINE L1 -862 1645 1601 6484 235 66 41 chrX 28550596 28551218 -148422922 + L1M3e LINE L1 1242 1847 -5259 1766 135 45 58 chrX 28551218 28551530 -148422610 - AluJb SINE Alu -4 308 1 6484 235 66 41 chrX 28551530 28551685 -148422455 + L1M3e LINE L1 1847 1997 -5109 2279 116 0 0 chrX 28551685 28551986 -148422154 + AluSx SINE Alu 1 301 -11 6484 235 66 41 chrX 28551986 28554890 -148419250 + L1M3e LINE L1 1997 4738 -2368 409 276 16 24 chrX 28554997 28555124 -148419016 + MIR3 SINE MIR 82 207 -1 2747 159 60 35 chrX 28555253 28555784 -148418356 + L1M3e LINE L1 4735 5284 -1822 1945 93 45 0 chrX 28555784 28556071 -148418069 + L1MA3 LINE L1 6003 6305 0 2747 159 60 35 chrX 28556071 28556143 -148417997 + L1M3e LINE L1 5284 5353 -1753 1005 261 122 88 chrX 28556159 28557198 -148416942 - HAL1 LINE L1 -1432 1075 2 276 350 100 17 chrX 28557235 28557355 -148416785 + L2 LINE L2 3125 3254 -18 207 0 0 0 chrX 28558107 28558130 -148416010 + (T)n Simple_repeat Simple_repeat 1 23 0 282 289 135 10 chrX 28558167 28558271 -148415869 + L2 LINE L2 3197 3313 0 2197 206 48 11 chrX 28558362 28558921 -148415219 - L1M4 LINE L1 -5083 1459 880 1170 269 52 42 chrX 28558988 28559446 -148414694 - L1M4 LINE L1 -5675 867 405 255 305 73 0 chrX 28559790 28559872 -148414268 + L2 LINE L2 3137 3224 -48 528 260 33 28 chrX 28559899 28560080 -148414060 - L1ME LINE L1 -389 5732 5551 2076 126 7 7 chrX 28560093 28560394 -148413746 + AluSx SINE Alu 1 301 -11 21 0 0 0 chrX 28560486 28560507 -148413633 + AT_rich Low_complexity Low_complexity 1 21 0 1988 139 3 13 chrX 28560519 28560820 -148413320 - AluJb SINE Alu -14 298 1 23 0 0 0 chrX 28560995 28561018 -148413122 + AT_rich Low_complexity Low_complexity 1 23 0 2026 140 7 7 chrX 28561538 28561838 -148412302 + AluSx SINE Alu 1 300 -12 339 85 0 0 chrX 28562473 28562520 -148411620 + (CA)n Simple_repeat Simple_repeat 2 48 0 2141 76 16 6 chrX 28563222 28563537 -148410603 + L1P5 LINE L1 5299 5616 -535 1518 53 11 7 chrX 28563675 28563884 -148410256 + L1M1 LINE L1 5595 5793 -370 327 319 0 0 chrX 28563913 28564004 -148410136 + L1MC4 LINE L1 6614 6704 -1338 * 369 281 0 0 chrX 28563935 28564024 -148410116 - L1MC4 LINE L1 -1339 6703 6615 205 176 0 0 chrX 28564024 28564058 -148410082 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 2138 69 34 0 chrX 28564058 28564069 -148410071 + L1PB1 LINE L1 5782 5791 -360 231 114 0 0 chrX 28564069 28564104 -148410036 + (TA)n Simple_repeat Simple_repeat 2 36 0 2138 69 34 0 chrX 28564104 28564383 -148409757 + L1PB1 LINE L1 5791 6082 -69 468 0 0 0 chrX 28565383 28565435 -148408705 + (TG)n Simple_repeat Simple_repeat 1 52 0 197 356 19 19 chrX 28567205 28567309 -148406831 - MIR SINE MIR -82 180 77 747 264 100 55 chrX 28567732 28568221 -148405919 - MLT1J LTR MaLR 0 511 1 982 254 73 0 chrX 28568621 28568853 -148405287 + ERVL LTR ERVL 1375 1623 -4141 842 285 27 19 chrX 28570624 28570880 -148403260 - MIR SINE MIR 0 262 5 502 284 32 21 chrX 28571128 28571318 -148402822 - L2 LINE L2 -3 3310 3119 295 281 142 85 chrX 28571507 28571767 -148402373 - L2 LINE L2 -173 3099 2825 724 193 67 13 chrX 28572351 28572501 -148401639 - L1ME3A LINE L1 -5 6165 6008 1667 151 45 39 chrX 28573148 28573485 -148400655 + MER44D DNA MER2_type 1 609 0 438 114 23 34 chrX 28573923 28574011 -148400129 - L1PB1 LINE L1 -107 6044 5958 21 0 0 0 chrX 28574241 28574262 -148399878 + AT_rich Low_complexity Low_complexity 1 21 0 1766 122 52 18 chrX 28574263 28574549 -148399591 + MER65A LTR ERV1 117 412 -33 647 135 9 0 chrX 28574763 28574874 -148399266 - L1MB4 LINE L1 -2 6178 6067 394 264 74 20 chrX 28575620 28575768 -148398372 - MIR3 SINE MIR -15 193 38 896 253 37 17 chrX 28576309 28576550 -148397590 + MIR SINE MIR 6 251 -11 2705 81 60 0 chrX 28578168 28578551 -148395589 + L1PA10 LINE L1 5763 6168 0 499 62 0 167 chrX 28578581 28578637 -148395503 - MADE1 DNA Mariner 0 80 45 2210 102 3 7 chrX 28578637 28578942 -148395198 + AluSx SINE Alu 1 304 -8 499 62 0 167 chrX 28578942 28578981 -148395159 - MADE1 DNA Mariner -35 45 1 207 0 0 0 chrX 28579420 28579443 -148394697 + (T)n Simple_repeat Simple_repeat 1 23 0 2120 108 9 9 chrX 28579854 28580196 -148393944 + L1MC3 LINE L1 7443 7784 -1 1216 179 13 18 chrX 28580499 28580723 -148393417 - MER58A DNA MER1_type -1 223 1 701 274 114 20 chrX 28581100 28581494 -148392646 - MER113 DNA MER1_type? -1 520 90 * 1597 194 137 27 chrX 28581463 28581864 -148392276 + MLT1E3 LTR MaLR 180 624 0 575 250 126 57 chrX 28582205 28582891 -148391249 - L1MDa LINE L1 -4516 2024 1334 2071 150 0 0 chrX 28582891 28583197 -148390943 - AluSx SINE Alu -6 306 1 382 251 108 64 chrX 28583922 28584125 -148390015 - MIR SINE MIR -30 232 21 269 345 76 34 chrX 28585407 28585526 -148388614 - L2 LINE L2 0 3272 3149 189 0 0 0 chrX 28585747 28585768 -148388372 + (TGAG)n Simple_repeat Simple_repeat 4 24 0 1018 230 39 57 chrX 28586106 28586437 -148387703 + L1MDa LINE L1 17 341 -6199 1918 221 32 35 chrX 28586814 28587306 -148386834 + L1MDa LINE L1 793 1283 -5260 436 229 57 41 chrX 28587306 28587428 -148386712 - L2 LINE L2 -790 2524 2401 29 28 0 0 chrX 28588540 28588576 -148385564 + AT_rich Low_complexity Low_complexity 1 36 0 458 317 72 24 chrX 28589430 28589638 -148384502 + MIR SINE MIR 8 225 -37 2350 110 0 0 chrX 28590161 28590469 -148383671 - AluSx SINE Alu -4 308 1 201 293 51 83 chrX 28590473 28590630 -148383510 + L2 LINE L2 2900 3051 -221 682 109 41 23 chrX 28590707 28591010 -148383130 + (TA)n Simple_repeat Simple_repeat 1 308 0 285 128 0 0 chrX 28591449 28591496 -148382644 + (CA)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chrX 28592305 28592326 -148381814 + AT_rich Low_complexity Low_complexity 1 21 0 221 222 0 0 chrX 28592605 28592650 -148381490 - L2 LINE L2 -6 3307 3263 259 274 34 20 chrX 28592659 28592762 -148381378 + (TA)n Simple_repeat Simple_repeat 1 108 -40 3602 187 8 5 chrX 28592762 28593413 -148380727 + MER82 DNA MER2_type 1 653 0 259 274 34 20 chrX 28593413 28593455 -148380685 + (TA)n Simple_repeat Simple_repeat 108 148 0 23 54 0 0 chrX 28593711 28593748 -148380392 + AT_rich Low_complexity Low_complexity 1 37 0 1854 234 119 34 chrX 28594474 28595346 -148378794 - HAL1 LINE L1 -630 1877 777 1189 163 4 44 chrX 28595346 28595573 -148378567 + MER20 DNA MER1_type 1 218 -1 1854 234 119 34 chrX 28595573 28595905 -148378235 - HAL1 LINE L1 -1730 777 475 1436 64 0 0 chrX 28595914 28596087 -148378053 - AluY SINE Alu -12 299 127 1345 261 79 30 chrX 28596088 28596529 -148377611 - HAL1 LINE L1 -2023 484 22 441 0 0 0 chrX 28598454 28598503 -148375637 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chrX 28598503 28598524 -148375616 + GC_rich Low_complexity Low_complexity 1 21 0 287 185 60 26 chrX 28598747 28598886 -148375254 - L1 LINE L1 -788 5358 5211 242 275 28 49 chrX 28598981 28599123 -148375017 - L2 LINE L2 -733 2581 2443 21 0 0 0 chrX 28600721 28600742 -148373398 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chrX 28601026 28601054 -148373086 + AT_rich Low_complexity Low_complexity 1 28 0 23 86 0 0 chrX 28601842 28601900 -148372240 + AT_rich Low_complexity Low_complexity 1 58 0 204 135 58 39 chrX 28602200 28602252 -148371888 + T-rich Low_complexity Low_complexity 2 54 0 1895 148 7 7 chrX 28602542 28602832 -148371308 - AluJb SINE Alu -22 290 1 4641 215 62 31 chrX 28603665 28604061 -148370079 + L1MB7 LINE L1 922 1304 -6263 2615 139 21 2 chrX 28604061 28604485 -148369655 - MSTB1 LTR MaLR 0 432 1 4641 215 62 31 chrX 28604485 28605969 -148368171 + L1MB7 LINE L1 1304 2939 -4628 3272 106 29 47 chrX 28605984 28606542 -148367598 - L1MA2 LINE L1 0 6304 5757 3313 91 0 0 chrX 28606642 28607084 -148367056 - L1MA3 LINE L1 -405 5900 5459 11804 221 30 21 chrX 28607117 28608861 -148365279 + L1MB7 LINE L1 3419 5146 -2457 2728 186 41 9 chrX 28608861 28609443 -148364697 + L1MB8 LINE L1 5567 6167 -11 11804 221 30 21 chrX 28609443 28610387 -148363753 + L1MB7 LINE L1 5146 6080 -1523 1988 122 30 7 chrX 28610387 28610683 -148363457 - AluSq SINE Alu -10 303 1 11804 221 30 21 chrX 28610683 28611151 -148362989 + L1MB7 LINE L1 6080 6542 -1061 1924 139 6 43 chrX 28611151 28611474 -148362666 + AluSx SINE Alu 1 311 -1 11804 221 30 21 chrX 28611474 28612100 -148362040 + L1MB7 LINE L1 6542 7245 -358 3752 243 22 17 chrX 28612101 28613212 -148360928 + L1ME3A LINE L1 3814 4971 -1175 3290 252 24 23 chrX 28613238 28614203 -148359937 + L1MD2 LINE L1 4058 5026 -1120 2228 81 3 17 chrX 28614203 28614499 -148359641 - AluSx SINE Alu -20 292 1 3290 252 24 23 chrX 28614499 28614590 -148359550 + L1MD2 LINE L1 5026 5115 -1031 4337 194 28 46 chrX 28614616 28614820 -148359320 + L1MD2 LINE L1 5283 5489 -870 802 159 0 0 chrX 28614820 28614946 -148359194 + FLAM_C SINE Alu 1 126 -7 4337 194 28 46 chrX 28614946 28615825 -148358315 + L1MD2 LINE L1 5489 6346 -13 27 49 0 0 chrX 28616329 28616370 -148357770 + AT_rich Low_complexity Low_complexity 1 41 0 1028 94 0 0 chrX 28617632 28617759 -148356381 + AluSq/x SINE Alu 1 127 -185 850 156 46 110 chrX 28618218 28618436 -148355704 - MER92B LTR ERV1 0 636 433 882 237 32 77 chrX 28618483 28618821 -148355319 + Charlie2 DNA MER1_type 8 330 -2532 * 1162 162 81 65 chrX 28618812 28618945 -148355195 + Charlie2 DNA MER1_type 1856 1985 -877 1977 124 0 11 chrX 28618945 28619227 -148354913 + AluJb SINE Alu 12 290 -22 1162 162 81 65 chrX 28619227 28619319 -148354821 + Charlie2 DNA MER1_type 1985 2074 -788 2831 165 51 7 chrX 28619319 28619789 -148354351 - L1MB7 LINE L1 0 6184 5685 2874 219 35 9 chrX 28619789 28620425 -148353715 - MER82 DNA MER2_type -1 652 1 2831 165 51 7 chrX 28620425 28620505 -148353635 - L1MB7 LINE L1 -499 5685 5610 1162 162 81 65 chrX 28620505 28620599 -148353541 + Charlie2 DNA MER1_type 2074 2181 -681 2260 88 0 7 chrX 28620995 28621307 -148352833 - AluSx SINE Alu 0 310 1 369 301 121 34 chrX 28621491 28621697 -148352443 - MIR SINE MIR -2 260 37 304 224 75 93 chrX 28621821 28621928 -148352212 + L2 LINE L2 3208 3312 -1 2565 49 7 0 chrX 28622139 28622445 -148351695 - AluY SINE Alu -3 308 1 2801 202 63 57 chrX 28622654 28622684 -148351456 + L1ME3A LINE L1 5322 5350 -820 2095 140 3 0 chrX 28622684 28622984 -148351156 + AluJb SINE Alu 1 301 -11 2801 202 63 57 chrX 28622984 28623227 -148350913 + L1ME3A LINE L1 5350 5590 -580 540 0 0 0 chrX 28623227 28623287 -148350853 + (TA)n Simple_repeat Simple_repeat 2 61 0 2801 202 63 57 chrX 28623287 28623815 -148350325 + L1ME3A LINE L1 5590 6129 -41 460 304 113 10 chrX 28624802 28624996 -148349144 + MIR SINE MIR 34 247 -15 1965 171 48 11 chrX 28625358 28625710 -148348430 + MLT1A1 LTR MaLR 1 365 0 1913 132 3 17 chrX 28626207 28626518 -148347622 + AluSx SINE Alu 1 307 0 279 197 0 61 chrX 28626575 28626641 -148347499 + MLT1A1 LTR MaLR 147 208 -157 568 285 14 7 chrX 28626692 28626836 -148347304 - MLT1H1 LTR MaLR -410 145 1 256 128 82 0 chrX 28627686 28627735 -148346405 - LTR41 LTR ERVL 0 795 726 1496 123 0 0 chrX 28627758 28627994 -148346146 - L1MA2 LINE L1 -4 6300 6065 1245 262 135 52 chrX 28628003 28628678 -148345462 - LTR41 LTR ERVL -40 733 3 184 370 115 37 chrX 28628832 28629075 -148345065 - L2 LINE L2 -842 2472 2211 405 348 108 10 chrX 28629169 28629474 -148344666 - L2 LINE L2 -1158 2156 1822 284 339 24 24 chrX 28630225 28630349 -148343791 + MIR SINE MIR 6 129 -133 2381 87 3 3 chrX 28630358 28630670 -148343470 - AluSx SINE Alu 0 312 1 675 235 220 14 chrX 28630862 28631171 -148342969 - MLT1G3 LTR MaLR 0 590 153 3666 225 95 62 chrX 28631176 28633715 -148340425 - L1ME2 LINE L1 -282 5951 3327 280 186 0 0 chrX 28633737 28633796 -148340344 - L1M4 LINE L1 -960 5186 5128 1300 345 17 49 chrX 28633894 28634449 -148339691 - L1M4 LINE L1 -991 5155 4619 441 0 0 0 chrX 28634449 28634498 -148339642 + (CA)n Simple_repeat Simple_repeat 2 50 0 1300 345 17 49 chrX 28634498 28634536 -148339604 - L1M4 LINE L1 -1527 4619 4581 505 280 48 20 chrX 28634671 28634964 -148339176 - L1M4 LINE L1 -1564 4582 4282 432 194 86 0 chrX 28634975 28635068 -148339072 + Tigger4(Zombi) DNA MER2_type 5 105 -2626 375 125 0 0 chrX 28635070 28635126 -148339014 + Tigger4(Zombi) DNA MER2_type 2676 2731 0 1447 199 52 52 chrX 28635126 28635584 -148338556 - L1M4 LINE L1 -1874 4272 3815 1494 244 64 13 chrX 28635594 28636218 -148337922 - L1M4 LINE L1 -2437 3709 3054 539 235 154 5 chrX 28636212 28636433 -148337707 - L1M4 LINE L1 -3507 2639 2386 * 1754 163 32 0 chrX 28636492 28636774 -148337366 + AluJb SINE Alu 1 291 -21 277 284 35 22 chrX 28636775 28637320 -148336820 - L1ME2 LINE L1 -4947 1449 828 398 331 23 12 chrX 28637538 28637795 -148336345 - L1ME2 LINE L1 -6030 366 107 40642 53 2 4 chrX 28637891 28644056 -148330084 - L1PA5 LINE L1 -1 6153 1 546 279 77 40 chrX 28644159 28644396 -148329744 - MIR SINE MIR -6 256 8 1457 201 70 39 chrX 28644396 28644487 -148329653 + MSTD LTR MaLR 1 88 -308 2199 106 3 0 chrX 28644487 28644800 -148329340 + AluSq SINE Alu 1 314 0 1457 201 70 39 chrX 28644800 28645091 -148329049 + MSTD LTR MaLR 88 396 0 207 0 0 0 chrX 28645399 28645422 -148328718 + (TTG)n Simple_repeat Simple_repeat 2 24 0 502 291 96 17 chrX 28645645 28646051 -148328089 - L1MC4a LINE L1 -1631 6177 5740 187 347 63 32 chrX 28646054 28646149 -148327991 - L2 LINE L2 -20 3252 3155 2119 124 0 0 chrX 28648285 28648576 -148325564 - AluSx SINE Alu -21 291 1 399 238 138 63 chrX 28648646 28649031 -148325109 - HAL1 LINE L1 0 2507 2152 2124 116 7 13 chrX 28649031 28649334 -148324806 - AluSg SINE Alu -9 301 1 399 238 138 63 chrX 28649334 28649749 -148324391 - HAL1 LINE L1 -355 2152 1579 724 259 61 9 chrX 28649765 28649977 -148324163 + MIR SINE MIR 5 227 -35 932 256 68 38 chrX 28649979 28650479 -148323661 - HAL1 LINE L1 -1046 1461 947 314 253 89 89 chrX 28650731 28650877 -148323263 - HAL1 LINE L1 -1870 637 492 233 258 11 34 chrX 28650953 28651042 -148323098 - HAL1 LINE L1 -2155 352 266 894 262 63 19 chrX 28651122 28651439 -148322701 - LTR16B LTR ERVL -7 457 127 680 168 198 38 chrX 28651439 28651677 -148322463 - L1M4b LINE L1 -5347 1512 1237 554 196 0 0 chrX 28651728 28651830 -148322310 - L1M4b LINE L1 -5781 1078 977 2465 42 3 3 chrX 28651830 28652136 -148322004 + L1PA4 LINE L1 5846 6151 -4 503 248 8 0 chrX 28652208 28652337 -148321803 + L1M3d LINE L1 1042 1171 -4720 368 315 78 103 chrX 28652494 28652903 -148321237 - L1M4b LINE L1 -6165 694 296 622 244 57 21 chrX 28653125 28653318 -148320822 - L1M4b LINE L1 -6649 210 11 2195 102 0 17 chrX 28653348 28653643 -148320497 - AluSx SINE Alu -22 290 1 204 147 88 29 chrX 28653702 28653770 -148320370 + (AATTG)n Simple_repeat Simple_repeat 4 75 0 621 206 65 144 chrX 28653930 28654048 -148320092 + MIR SINE MIR 2 128 -134 2218 117 7 0 chrX 28654048 28654348 -148319792 - AluSx SINE Alu -10 302 1 621 206 65 144 chrX 28654348 28654506 -148319634 + MIR SINE MIR 128 256 -6 26 30 0 0 chrX 28654842 28654875 -148319265 + AT_rich Low_complexity Low_complexity 1 33 0 484 255 41 66 chrX 28655110 28655306 -148318834 + MIR3 SINE MIR 16 206 -2 312 317 43 43 chrX 28655488 28655649 -148318491 - L2 LINE L2 -191 3081 2921 267 334 123 39 chrX 28655864 28656196 -148317944 - L2 LINE L2 -505 2809 2450 381 291 143 37 chrX 28656570 28656759 -148317381 - MIR SINE MIR -52 210 2 493 160 8 145 chrX 28656813 28656944 -148317196 + MER81 DNA DNA 1 113 -1 188 83 0 28 chrX 28657198 28657234 -148316906 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1843 147 0 11 chrX 28657236 28657515 -148316625 - AluJb SINE Alu -31 281 6 294 221 74 0 chrX 28658158 28658253 -148315887 - L1ME1 LINE L1 -4 6162 6061 334 283 85 9 chrX 28659545 28659651 -148314489 + MIR SINE MIR 37 150 -58 237 132 0 0 chrX 28659651 28659689 -148314451 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 229 297 127 25 chrX 28659758 28659876 -148314264 + L3b LINE CR1 1357 1486 -97 1344 180 43 7 chrX 28659990 28660295 -148313845 + MER33 DNA MER1_type 9 324 0 2027 157 3 0 chrX 28660311 28660611 -148313529 + AluJo SINE Alu 1 301 -11 21 0 0 0 chrX 28661040 28661061 -148313079 + AT_rich Low_complexity Low_complexity 1 21 0 2234 85 31 37 chrX 28661085 28661155 -148312985 + L1PB1 LINE L1 5800 5869 -282 2384 95 0 7 chrX 28661155 28661460 -148312680 - AluSx SINE Alu -9 303 1 2234 85 31 37 chrX 28661460 28661741 -148312399 + L1PB1 LINE L1 5869 6149 -2 885 121 0 0 chrX 28662534 28662650 -148311490 + AluSx SINE Alu 1 116 -197 1319 130 0 5 chrX 28662781 28662966 -148311174 + AluSx SINE Alu 112 295 -17 435 268 174 16 chrX 28663831 28664021 -148310119 + MIR SINE MIR 2 221 -41 2333 98 0 7 chrX 28664721 28665027 -148309113 - AluSq SINE Alu -9 304 1 683 308 87 52 chrX 28666080 28666366 -148307774 + L3 LINE CR1 339 642 -935 734 147 0 70 chrX 28666366 28666509 -148307631 + FLAM_C SINE Alu 1 133 0 683 308 87 52 chrX 28666509 28666589 -148307551 + L3 LINE CR1 642 718 -859 1608 268 59 26 chrX 28666590 28667164 -148306976 - MLT1E LTR MaLR 0 593 1 537 283 242 21 chrX 28667165 28667550 -148306590 + L3 LINE CR1 716 1185 -392 350 182 9 82 chrX 28667551 28667594 -148306546 - Charlie2 DNA MER1_type -5 2857 2812 2167 143 0 0 chrX 28667594 28667901 -148306239 + AluJb SINE Alu 1 307 -5 350 182 9 82 chrX 28667901 28667967 -148306173 - Charlie2 DNA MER1_type -50 2812 2756 2338 77 7 3 chrX 28668006 28668305 -148305835 - AluSg SINE Alu -10 300 1 864 170 0 32 chrX 28668305 28668493 -148305647 - Charlie2a DNA MER1_type -1207 1655 1474 298 268 94 31 chrX 28668528 28668655 -148305485 - Charlie2b DNA MER1_type -2090 692 558 469 270 0 0 chrX 28668807 28668922 -148305218 - Charlie2b DNA MER1_type -2747 115 1 700 333 116 16 chrX 28669010 28669328 -148304812 + L3 LINE CR1 1221 1570 -7 2216 83 55 0 chrX 28669328 28669618 -148304522 - AluSx SINE Alu -6 306 1 1987 130 13 0 chrX 28669730 28670038 -148304102 - AluSx SINE Alu 0 312 1 427 270 51 22 chrX 28670150 28670287 -148303853 + MIR SINE MIR 1 141 -121 624 198 130 36 chrX 28670612 28670865 -148303275 - L1MC5 LINE L1 -48 7913 7637 1711 180 21 7 chrX 28671664 28671947 -148302193 + AluJb SINE Alu 1 287 -25 2216 119 0 0 chrX 28671952 28672245 -148301895 + AluSx SINE Alu 1 293 -19 47 73 0 0 chrX 28672890 28672986 -148301154 + AT_rich Low_complexity Low_complexity 1 96 0 23 0 0 0 chrX 28673032 28673055 -148301085 + AT_rich Low_complexity Low_complexity 1 23 0 2985 140 85 23 chrX 28673377 28673906 -148300234 - MER68 LTR ERV1 0 562 1 2458 77 0 0 chrX 28674370 28674667 -148299473 + AluSq SINE Alu 1 297 -16 503 251 70 45 chrX 28674821 28675064 -148299076 - L1ME4a LINE L1 -262 5859 5611 240 272 52 58 chrX 28675133 28675306 -148298834 - L1ME3A LINE L1 -35 6118 5947 2296 94 10 0 chrX 28675394 28675691 -148298449 - AluSx SINE Alu -12 300 1 449 207 209 6 chrX 28675697 28675884 -148298256 - L1ME3A LINE L1 -232 5913 5690 693 234 126 59 chrX 28675933 28676540 -148297600 - L1ME3A LINE L1 -1483 4646 3891 3363 175 132 53 chrX 28676543 28676852 -148297288 + Tigger3b DNA MER2_type 1 284 -2744 7695 27 1 1 chrX 28676852 28678509 -148295631 - L1PA3 LINE L1 0 6155 4499 3363 175 132 53 chrX 28678509 28679339 -148294801 + Tigger3b DNA MER2_type 284 1230 -1 1723 163 44 10 chrX 28679497 28679791 -148294349 - AluJb SINE Alu -1 311 8 761 225 127 62 chrX 28679796 28679898 -148294242 - L1ME3A LINE L1 -2476 3653 3559 2097 112 0 7 chrX 28679898 28680183 -148293957 - AluSx SINE Alu -29 283 1 761 225 127 62 chrX 28680183 28680526 -148293614 - L1ME3A LINE L1 -2570 3559 3162 2410 92 16 0 chrX 28680526 28680832 -148293308 - AluSx SINE Alu -1 311 1 761 225 127 62 chrX 28680832 28680945 -148293195 - L1ME3A LINE L1 -2967 3162 3058 575 279 121 34 chrX 28680927 28682169 -148291971 - L1MEd LINE L1 -3997 2313 919 * 2003 71 90 11 chrX 28682212 28682480 -148291660 + AluSq SINE Alu 1 289 -24 289 77 0 0 chrX 28682499 28682538 -148291602 + AluSp/q SINE Alu 251 289 -14 707 127 8 0 chrX 28682540 28682658 -148291482 + (TAGA)n Simple_repeat Simple_repeat 3 121 0 321 369 92 10 chrX 28682738 28682933 -148291207 - L1MEd LINE L1 -5295 824 614 1689 170 18 4 chrX 28682933 28683234 -148290906 - AluJo SINE Alu 0 305 1 1537 170 4 0 chrX 28683470 28683717 -148290423 + AluJo SINE Alu 65 312 0 824 135 7 21 chrX 28684073 28684214 -148289926 - FLAM_C SINE Alu -3 140 2 2890 201 147 84 chrX 28684340 28684926 -148289214 + L1MC3 LINE L1 6477 7025 -760 355 169 0 31 chrX 28684926 28684991 -148289149 + MLT1F1 LTR MaLR 63 125 -442 2890 201 147 84 chrX 28684991 28685507 -148288633 + L1MC3 LINE L1 7025 7725 -60 1316 202 13 8 chrX 28685507 28685745 -148288395 + MER8 DNA MER2_type 1 239 0 2890 201 147 84 chrX 28685745 28685799 -148288341 + L1MC3 LINE L1 7725 7774 -11 515 190 67 123 chrX 28685899 28686001 -148288139 + L1MC5 LINE L1 7644 7750 -211 2080 129 0 0 chrX 28686001 28686296 -148287844 - AluJb SINE Alu -17 295 1 515 190 67 123 chrX 28686296 28686461 -148287679 + L1MC5 LINE L1 7750 7896 -65 204 59 0 59 chrX 28686780 28686814 -148287326 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 631 182 109 18 chrX 28686820 28686985 -148287155 - L1MD2 LINE L1 -16 6343 6164 * 640 261 111 36 chrX 28686981 28687549 -148286591 - L1MC4a LINE L1 -1595 6213 5521 908 327 157 18 chrX 28687959 28688703 -148285437 - L2 LINE L2 -474 2840 1993 202 239 119 15 chrX 28689093 28689160 -148284980 - L2 LINE L2 -214 3058 2985 1958 138 3 3 chrX 28689230 28689520 -148284620 - AluJb SINE Alu -21 291 2 421 266 29 53 chrX 28690157 28690364 -148283776 + L1MEd LINE L1 1025 1226 -4893 268 377 52 7 chrX 28690371 28690525 -148283615 - L2 LINE L2 -933 2381 2221 958 218 65 20 chrX 28690683 28690931 -148283209 + MIR SINE MIR 2 260 -2 366 292 50 3 chrX 28692249 28692368 -148281772 + MIR SINE MIR 1 128 -80 276 250 57 34 chrX 28692937 28693025 -148281115 - MIR3 SINE MIR -31 177 88 270 263 0 13 chrX 28693059 28693135 -148281005 + LTR67 LTR ERVL 4 78 -479 2457 97 0 0 chrX 28694219 28694530 -148279610 - AluSq SINE Alu -2 311 1 1461 161 128 4 chrX 28694884 28695127 -148279013 + AluJo SINE Alu 2 274 -38 1071 198 8 44 chrX 28695820 28696068 -148278072 + MIR SINE MIR 24 262 0 796 236 101 19 chrX 28696092 28696359 -148277781 - L1ME3A LINE L1 -229 5941 5653 * 2028 251 186 42 chrX 28696344 28697506 -148276634 - L1ME3A LINE L1 -1228 4918 3924 2421 84 0 0 chrX 28697506 28697804 -148276336 + AluSc SINE Alu 1 298 -11 2028 251 186 42 chrX 28697804 28698270 -148275870 - L1ME3A LINE L1 -2222 3924 3526 1767 152 14 24 chrX 28698270 28698567 -148275573 - AluJb SINE Alu -18 294 1 2028 251 186 42 chrX 28698567 28698759 -148275381 - L1ME3A LINE L1 -2620 3526 2835 1844 189 0 0 chrX 28698777 28699079 -148275061 - AluJo SINE Alu -10 302 1 227 189 164 8 chrX 28699079 28699201 -148274939 - L1M4 LINE L1 -2921 3225 3085 725 255 119 7 chrX 28699565 28699867 -148274273 - L1ME4a LINE L1 -255 5866 5531 416 206 36 41 chrX 28700044 28700093 -148274047 - L1M4 LINE L1 -3175 2971 2923 1974 152 3 3 chrX 28700093 28700389 -148273751 + AluSx SINE Alu 2 297 -15 416 206 36 41 chrX 28700389 28700533 -148273607 - L1M4 LINE L1 -3223 2923 2779 1867 154 0 35 chrX 28700605 28700924 -148273216 - AluJo SINE Alu -4 308 1 1739 157 0 48 chrX 28701289 28701602 -148272538 + AluJo SINE Alu 1 298 -14 430 173 0 0 chrX 28701732 28701807 -148272333 + MER5C DNA MER1_type 50 124 -200 370 154 0 0 chrX 28701835 28701906 -148272234 - MER34C LTR ERV1 -471 101 1 306 309 41 0 chrX 28701982 28702079 -148272061 - L1ME4a LINE L1 -4 6117 6017 23 86 0 0 chrX 28702519 28702577 -148271563 + AT_rich Low_complexity Low_complexity 1 58 0 535 289 109 8 chrX 28702711 28702977 -148271163 + L1ME LINE L1 4378 4670 -1476 2138 122 0 3 chrX 28702996 28703291 -148270849 + AluSx SINE Alu 1 294 -18 1111 109 0 0 chrX 28703391 28703538 -148270602 + AluSg/x SINE Alu 162 308 -2 2086 108 17 14 chrX 28703614 28703911 -148270229 - AluSx SINE Alu -14 298 1 608 249 83 38 chrX 28704967 28705173 -148268967 + L1ME LINE L1 5381 5605 -516 2436 41 3 10 chrX 28705173 28705466 -148268674 + AluY SINE Alu 1 291 -20 608 249 83 38 chrX 28705466 28705548 -148268592 + L1ME LINE L1 5605 5682 -439 207 0 0 0 chrX 28706244 28706267 -148267873 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chrX 28706834 28706858 -148267282 + AT_rich Low_complexity Low_complexity 1 24 0 2241 114 7 0 chrX 28707598 28707906 -148266234 + AluSq SINE Alu 1 310 -3 2566 37 3 0 chrX 28708270 28708569 -148265571 + AluY SINE Alu 1 300 -11 2041 109 4 11 chrX 28708804 28709078 -148265062 - AluSx SINE Alu -30 282 11 290 297 157 42 chrX 28709988 28710224 -148263916 + L3 LINE CR1 1310 1572 -5 2331 109 0 0 chrX 28711730 28712041 -148262099 + AluSq SINE Alu 1 311 -2 189 0 0 0 chrX 28712240 28712261 -148261879 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2410 73 0 0 chrX 28714638 28714926 -148259214 + AluSx SINE Alu 1 288 -24 239 254 51 0 chrX 28715368 28715427 -148258713 - L2 LINE L2 0 3313 3252 400 274 113 81 chrX 28715466 28715985 -148258155 - MLT1G1 LTR MaLR -1 587 16 395 274 97 0 chrX 28716035 28716159 -148257981 - L2 LINE L2 -215 3057 2922 2091 97 0 17 chrX 28716362 28716698 -148257442 - AluJb SINE Alu 0 333 3 1751 260 15 23 chrX 28716812 28717289 -148256851 - L2 LINE L2 -3 3310 2838 405 226 0 104 chrX 28717296 28717402 -148256738 - L2 LINE L2 -722 2592 2498 895 129 81 21 chrX 28718090 28718276 -148255864 - MER20 DNA MER1_type -22 197 1 544 112 34 0 chrX 28718409 28718498 -148255642 + AluSp/q SINE Alu 213 304 -9 772 152 8 23 chrX 28718519 28718651 -148255489 - FLAM_C SINE Alu -3 130 1 1203 219 0 5 chrX 28720162 28720386 -148253754 + MER58A DNA MER1_type 1 223 -1 413 316 13 20 chrX 28720439 28720591 -148253549 + MIR3 SINE MIR 55 205 -3 744 174 0 43 chrX 28720683 28720821 -148253319 + FLAM_C SINE Alu 1 132 -1 2158 110 0 3 chrX 28721357 28721647 -148252493 + AluJb SINE Alu 1 289 -23 2355 60 0 3 chrX 28722699 28723023 -148251117 - AluY SINE Alu 0 323 1 227 125 0 0 chrX 28723256 28723288 -148250852 + FLAM_C SINE Alu 127 158 0 1837 91 4 42 chrX 28723296 28723560 -148250580 - AluSg SINE Alu -12 298 45 1280 160 10 5 chrX 28723561 28723755 -148250385 + AluJb SINE Alu 102 296 -16 1884 139 7 37 chrX 28724416 28724711 -148249429 + AluJo SINE Alu 3 288 -24 21 0 0 0 chrX 28725013 28725034 -148249106 + AT_rich Low_complexity Low_complexity 1 21 0 2068 149 0 10 chrX 28725043 28725352 -148248788 - AluJb SINE Alu -6 306 1 1409 189 0 23 chrX 28725487 28725751 -148248389 + AluJb SINE Alu 3 260 -52 201 154 0 0 chrX 28726109 28726148 -148247992 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 294 95 0 0 chrX 28726671 28726713 -148247427 + (TA)n Simple_repeat Simple_repeat 2 43 0 1857 108 26 99 chrX 28726831 28727174 -148246966 - AluYb8 SINE Alu 0 318 1 292 233 192 8 chrX 28727176 28727296 -148246844 + MIR SINE MIR 118 259 -3 473 306 27 14 chrX 28727340 28727487 -148246653 - MIR SINE MIR -108 154 6 2506 81 0 3 chrX 28727839 28728149 -148245991 - AluSc SINE Alu 0 309 1 491 277 6 78 chrX 28728180 28728346 -148245794 - L2 LINE L2 -631 2683 2530 654 227 18 0 chrX 28728353 28728372 -148245768 - L1MA10 LINE L1 0 6334 6316 3961 171 41 18 chrX 28728372 28728985 -148245155 - L1ME1 LINE L1 -10 6156 5516 2254 109 0 0 chrX 28728985 28729279 -148244861 - AluSg SINE Alu -16 294 1 3961 171 41 18 chrX 28729279 28729537 -148244603 - L1ME1 LINE L1 -650 5516 5265 21 0 0 0 chrX 28729655 28729676 -148244464 + AT_rich Low_complexity Low_complexity 1 21 0 1689 108 0 0 chrX 28729755 28729978 -148244162 - AluSq SINE Alu -5 308 86 27 49 0 0 chrX 28730477 28730518 -148243622 + AT_rich Low_complexity Low_complexity 1 41 0 11791 40 1 17 chrX 28730528 28733001 -148241139 - L1PA5 LINE L1 -5 6149 3705 7149 74 2 1 chrX 28733001 28733935 -148240205 + MER11C LTR ERVK 1 935 -136 10670 82 5 1 chrX 28733949 28735421 -148238719 + HERVK11 LTR ERVK 5287 6765 -1188 7536 67 5 3 chrX 28735405 28736403 -148237737 + HERVK11 LTR ERVK 6954 7953 0 * 8648 50 10 8 chrX 28736403 28737472 -148236668 + MER11C LTR ERVK 1 1071 0 12645 38 6 4 chrX 28737472 28739163 -148234977 - L1P LINE L1 -2436 3710 2017 358 127 0 0 chrX 28739317 28739380 -148234760 - Alu SINE Alu 0 302 240 1914 144 28 0 chrX 28740270 28740555 -148233585 - AluJo SINE Alu -19 293 1 323 290 19 56 chrX 28740618 28740725 -148233415 - L3 LINE CR1 -508 1069 967 577 240 145 11 chrX 28740896 28741075 -148233065 - MIR SINE MIR -58 204 2 1178 228 37 97 chrX 28741622 28742395 -148231745 + L1ME3A LINE L1 5174 5938 -232 2473 85 0 0 chrX 28743008 28743315 -148230825 - AluSc SINE Alu -1 308 2 2467 76 3 0 chrX 28743421 28743725 -148230415 - AluSp SINE Alu -7 306 2 280 244 126 17 chrX 28743927 28744046 -148230094 + MIR SINE MIR 125 256 -6 243 132 0 0 chrX 28744973 28745011 -148229129 - Alu SINE Alu -34 265 228 2308 98 0 3 chrX 28745013 28745310 -148228830 + AluSx SINE Alu 5 300 -12 2303 84 7 0 chrX 28746665 28746951 -148227189 + AluSx SINE Alu 1 288 -24 283 345 73 0 chrX 28747400 28747510 -148226630 - L2 LINE L2 -6 3266 3149 2357 74 3 3 chrX 28747790 28748086 -148226054 + AluSq SINE Alu 3 298 -15 614 270 64 35 chrX 28748095 28748440 -148225700 - L1ME3A LINE L1 -222 5948 5594 1061 172 0 21 chrX 28750409 28750595 -148223545 + AluJo SINE Alu 121 302 -10 331 196 9 24 chrX 28751617 28751744 -148222396 + MIR SINE MIR 76 256 -6 2448 90 0 0 chrX 28752264 28752574 -148221566 - AluSq SINE Alu -3 310 1 209 412 0 12 chrX 28752833 28752918 -148221222 + L2 LINE L2 3141 3224 -48 727 303 242 19 chrX 28752928 28753515 -148220625 + L3 LINE CR1 787 1504 -73 808 241 6 12 chrX 28753517 28753687 -148220453 - MER5B DNA MER1_type 0 178 10 427 256 33 133 chrX 28753713 28753847 -148220293 - MIR SINE MIR -5 257 111 724 145 0 65 chrX 28753847 28753985 -148220155 + FLAM_C SINE Alu 1 129 -4 427 256 33 133 chrX 28753985 28754041 -148220099 - MIR SINE MIR -151 111 99 2216 87 56 0 chrX 28754041 28754329 -148219811 - AluSg SINE Alu -5 305 2 427 256 33 133 chrX 28754329 28754407 -148219733 - MIR SINE MIR -163 99 15 2131 145 3 0 chrX 28754934 28755244 -148218896 + AluJb SINE Alu 1 311 -1 1965 118 0 46 chrX 28755246 28755551 -148218589 + AluSx SINE Alu 1 291 -21 203 200 0 0 chrX 28756974 28757009 -148217131 + T-rich Low_complexity Low_complexity 1 35 0 2294 176 34 22 chrX 28757871 28757919 -148216221 - L1MB2 LINE L1 0 6171 6125 2294 103 3 22 chrX 28757919 28758230 -148215910 - AluSq SINE Alu -8 305 1 2294 176 34 22 chrX 28758230 28758680 -148215460 - L1MB2 LINE L1 -46 6125 5667 844 220 11 26 chrX 28759113 28759293 -148214847 + L2 LINE L2 1110 1286 -2028 560 199 126 136 chrX 28759293 28759370 -148214770 + MER5A DNA MER1_type 1 77 -112 891 165 0 0 chrX 28759370 28759503 -148214637 + FLAM_A SINE Alu 1 133 0 560 199 126 136 chrX 28759503 28759516 -148214624 + MER5A DNA MER1_type 77 89 -100 2444 82 0 3 chrX 28759516 28759819 -148214321 + AluSx SINE Alu 1 302 -10 560 199 126 136 chrX 28759819 28759918 -148214222 + MER5A DNA MER1_type 89 189 0 572 264 40 0 chrX 28759918 28760066 -148214074 + L2 LINE L2 1280 1433 -1881 1912 152 7 7 chrX 28760124 28760426 -148213714 + AluJb SINE Alu 1 302 -10 319 194 257 27 chrX 28760538 28760760 -148213380 + L1MC4a LINE L1 5988 6260 -1548 398 205 33 25 chrX 28760806 28760928 -148213212 - L1MC4 LINE L1 -1 8041 7919 2357 196 142 17 chrX 28760949 28761111 -148213029 - L1MC4 LINE L1 -207 7835 7695 2103 115 0 3 chrX 28761111 28761397 -148212743 + AluSx SINE Alu 3 287 -25 2357 196 142 17 chrX 28761397 28761938 -148212202 - L1MC4 LINE L1 -347 7695 7044 847 113 152 0 chrX 28762153 28762304 -148211836 - Tigger2 DNA MER2_type -10 2708 2535 428 159 0 0 chrX 28762324 28762393 -148211747 - AluJ/FLAM SINE Alu -243 69 1 1384 129 7 91 chrX 28762393 28762440 -148211700 + Tigger2 DNA MER2_type 1030 1079 -1639 1904 153 10 10 chrX 28762440 28762748 -148211392 + 7SLRNA srpRNA srpRNA 1 308 -12 1384 129 7 91 chrX 28762748 28762987 -148211153 + Tigger2 DNA MER2_type 1079 1292 -1426 382 115 16 0 chrX 28762987 28763048 -148211092 - Tigger2 DNA MER2_type -1379 1339 1278 1464 131 12 37 chrX 28763052 28763296 -148210844 + AluJo SINE Alu 61 298 -14 5111 134 48 60 chrX 28763297 28763350 -148210790 - Tigger2 DNA MER2_type -1679 1039 987 1720 161 91 0 chrX 28763350 28763636 -148210504 - AluSx SINE Alu 0 312 1 5111 134 48 60 chrX 28763636 28763943 -148210197 - Tigger2 DNA MER2_type -1731 987 678 1982 103 0 4 chrX 28763943 28764204 -148209936 - AluSq SINE Alu -13 300 41 5111 134 48 60 chrX 28764204 28764893 -148209247 - Tigger2 DNA MER2_type -2040 678 2 2365 80 13 0 chrX 28764967 28765269 -148208871 - AluSp SINE Alu -6 307 2 927 209 13 94 chrX 28765300 28765396 -148208744 + L1MC5 LINE L1 6703 6805 -1212 2361 104 0 0 chrX 28765396 28765705 -148208435 - AluSc SINE Alu 0 309 1 1879 121 96 0 chrX 28765707 28765979 -148208161 - AluSx SINE Alu -14 298 1 927 209 13 94 chrX 28765979 28766334 -148207806 + L1MC5 LINE L1 6806 7076 -941 1501 186 77 45 chrX 28766338 28766780 -148207360 + L1ME2 LINE L1 5699 6154 -10 765 188 24 72 chrX 28766787 28766995 -148207145 - AluJ SINE Alu -3 309 112 813 205 40 63 chrX 28767383 28767685 -148206455 + L1MC5 LINE L1 7271 7565 -396 302 240 133 36 chrX 28767784 28767980 -148206160 + L1MC5 LINE L1 7609 7823 -138 302 207 0 0 chrX 28768098 28768156 -148205984 + L1MC5 LINE L1 7836 7893 -68 3162 258 95 17 chrX 28768177 28768738 -148205402 + L2 LINE L2 1721 2237 -1077 885 105 0 70 chrX 28768738 28768881 -148205259 - AluJ SINE Alu -169 133 1 3162 258 95 17 chrX 28768881 28769325 -148204815 + L2 LINE L2 2237 2805 -509 284 268 216 0 chrX 28771341 28771438 -148202702 + L2 LINE L2 3180 3297 -16 221 225 0 0 chrX 28771404 28771444 -148202696 + MIR SINE MIR 219 258 -4 * 207 0 0 0 chrX 28771451 28771474 -148202666 + (A)n Simple_repeat Simple_repeat 1 23 0 794 271 72 40 chrX 28771477 28771868 -148202272 + L2 LINE L2 2776 3184 -129 792 134 0 17 chrX 28771884 28772003 -148202137 + FLAM_C SINE Alu 1 117 -16 191 311 0 0 chrX 28772622 28772683 -148201457 - L3 LINE CR1 -824 753 693 197 65 32 0 chrX 28773584 28773615 -148200525 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1821 169 0 26 chrX 28774382 28774689 -148199451 - AluJb SINE Alu -13 299 1 1424 284 135 30 chrX 28774916 28775577 -148198563 - L3 LINE CR1 -5 1572 843 1822 130 60 3 chrX 28776128 28776413 -148197727 + AluJb SINE Alu 1 301 -11 384 348 39 17 chrX 28776767 28776948 -148197192 + L2 LINE L2 2934 3118 -154 180 311 0 0 chrX 28777028 28777073 -148197067 + L2 LINE L2 3223 3267 -5 689 130 30 46 chrX 28777432 28777563 -148196577 + FLAM_C SINE Alu 5 133 0 25 51 0 0 chrX 28777651 28777690 -148196450 + AT_rich Low_complexity Low_complexity 1 39 0 269 157 301 0 chrX 28781537 28781620 -148192520 - L1MC5 LINE L1 -49 7912 7805 1581 164 0 12 chrX 28781661 28781905 -148192235 + AluJb SINE Alu 58 298 -14 2207 95 0 10 chrX 28781940 28782234 -148191906 - AluSx SINE Alu -21 291 1 324 68 23 0 chrX 28782922 28782966 -148191174 - Alu SINE Alu -256 46 2 27 73 0 0 chrX 28783787 28783842 -148190298 + AT_rich Low_complexity Low_complexity 1 55 0 190 304 0 0 chrX 28784316 28784362 -148189778 - L3 LINE CR1 -95 1482 1437 973 196 6 0 chrX 28784726 28784905 -148189235 - AluJb SINE Alu -14 298 119 970 115 7 7 chrX 28785017 28785156 -148188984 - AluJb SINE Alu -173 139 1 263 202 26 149 chrX 28785286 28785347 -148188793 - MIR SINE MIR -115 147 105 2257 111 0 0 chrX 28785347 28785645 -148188495 + AluSg SINE Alu 1 298 -12 263 202 26 149 chrX 28785645 28785697 -148188443 - MIR SINE MIR -157 105 48 1728 235 78 25 chrX 28785706 28786297 -148187843 + L2 LINE L2 1543 2164 -1150 4335 157 87 13 chrX 28786338 28787097 -148187043 - MER21B LTR ERV1 -44 819 5 1688 99 0 0 chrX 28787141 28787362 -148186778 + AluSq SINE Alu 92 312 -1 13992 172 35 27 chrX 28787393 28790172 -148183968 - MER21B-int LTR ERV1 -42 4972 2779 2307 99 0 6 chrX 28790172 28790484 -148183656 - AluSx SINE Alu -2 310 1 13992 172 35 27 chrX 28790484 28791626 -148182514 - MER21B-int LTR ERV1 -2235 2779 1647 2759 170 135 26 chrX 28791695 28792308 -148181832 - MER21B LTR ERV1 0 863 184 4347 43 10 0 chrX 28792409 28792924 -148181216 + LTR10C LTR ERV1 71 590 -1 1490 138 36 28 chrX 28793001 28793254 -148180886 - MER21B-int LTR ERV1 -3932 259 5 2259 114 133 4 chrX 28793254 28793733 -148180407 + LTR35 LTR ERV1 1 618 0 5059 147 41 13 chrX 28793769 28794599 -148179541 - MER21B LTR ERV1 -7 856 4 6233 136 35 42 chrX 28794666 28795068 -148179072 - MER21B-int LTR ERV1 -42 4149 3746 2146 220 28 28 chrX 28795068 28795573 -148178567 - LTR10B LTR ERV1 0 505 1 6233 136 35 42 chrX 28795573 28796275 -148177865 - MER21B-int LTR ERV1 -445 3746 3053 * 7909 153 76 45 chrX 28796266 28796487 -148177653 - LTR8A-int LTR ERV1 -985 3206 2993 186 191 0 43 chrX 28796487 28796534 -148177606 + MER5A DNA MER1_type 16 60 -129 7909 153 76 45 chrX 28796534 28796784 -148177356 - LTR8A-int LTR ERV1 -1198 2993 2752 2234 113 0 7 chrX 28796784 28797086 -148177054 - AluSq SINE Alu -13 300 1 7909 153 76 45 chrX 28797086 28798079 -148176061 - LTR8A-int LTR ERV1 -1439 2752 1648 1331 214 36 52 chrX 28798122 28798509 -148175631 - LTR8A-int LTR ERV1 -2401 1790 1410 3167 204 58 57 chrX 28798624 28799502 -148174638 - LTR8A-int LTR ERV1 -2252 4506 3628 2732 155 66 29 chrX 28799503 28799595 -148174545 - LTR8A-int LTR ERV1 -3656 535 448 2871 166 109 51 chrX 28799595 28800282 -148173858 - LTR8A LTR ERV1 0 727 1 2732 155 66 29 chrX 28800282 28800625 -148173515 - LTR8A-int LTR ERV1 -3743 448 76 2804 190 28 49 chrX 28800625 28801273 -148172867 - LTR27 LTR ERV1 -1 635 2 2732 155 66 29 chrX 28801273 28801352 -148172788 - LTR8A-int LTR ERV1 -4115 76 1 4872 158 68 15 chrX 28801365 28802182 -148171958 - MER21B LTR ERV1 -2 861 1 459 0 0 0 chrX 28802614 28802665 -148171475 + (CA)n Simple_repeat Simple_repeat 2 52 0 528 329 69 0 chrX 28803041 28803257 -148170883 - MIR SINE MIR -27 235 5 464 249 60 38 chrX 28803397 28803582 -148170558 - L1MC4a LINE L1 -539 7269 7081 231 268 0 0 chrX 28804389 28804460 -148169680 - HAL1 LINE L1 -2 2505 2435 2203 75 0 0 chrX 28804607 28804874 -148169266 - AluSc SINE Alu -8 301 35 219 88 0 0 chrX 28805026 28805060 -148169080 + (TC)n Simple_repeat Simple_repeat 1 34 0 1307 203 112 61 chrX 28805183 28805666 -148168474 - MLT1H LTR MaLR 0 549 1 1012 173 0 0 chrX 28805929 28806085 -148168055 + FRAM SINE Alu 1 155 -21 1041 156 12 6 chrX 28806626 28806799 -148167341 - AluSq SINE Alu -139 174 1 24 0 0 0 chrX 28808284 28808308 -148165832 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chrX 28808604 28808627 -148165513 + AT_rich Low_complexity Low_complexity 1 23 0 831 173 0 8 chrX 28809011 28809144 -148164996 + AluJo/FLAM SINE Alu 2 133 -169 1575 157 149 0 chrX 28809147 28809409 -148164731 + AluJo SINE Alu 1 301 -1 24 67 0 0 chrX 28809957 28810002 -148164138 + AT_rich Low_complexity Low_complexity 1 45 0 289 258 11 32 chrX 28811498 28811591 -148162549 - MIR3 SINE MIR -6 202 112 26 0 0 0 chrX 28811815 28811841 -148162299 + AT_rich Low_complexity Low_complexity 1 26 0 278 203 14 40 chrX 28811976 28812050 -148162090 - MIR3 SINE MIR -134 74 3 13545 36 1 0 chrX 28812711 28815022 -148159118 - L1PA4 LINE L1 -3 6152 3841 28 29 0 0 chrX 28815149 28815184 -148158956 + AT_rich Low_complexity Low_complexity 1 35 0 290 143 0 0 chrX 28815937 28815986 -148158154 + Alu SINE Alu 252 300 -2 847 215 0 13 chrX 28816000 28816158 -148157982 - AluJb SINE Alu -21 291 136 660 83 0 10 chrX 28816154 28816250 -148157890 + AluJ/FRAM SINE Alu 218 312 0 * 1888 128 24 7 chrX 28816377 28816666 -148157474 + AluJo SINE Alu 1 294 -18 2551 87 0 0 chrX 28817434 28817744 -148156396 + AluSq SINE Alu 1 310 -3 228 135 0 0 chrX 28817905 28817942 -148156198 + (A)n Simple_repeat Simple_repeat 1 37 0 1201 162 5 25 chrX 28818387 28818591 -148155549 - MER3 DNA MER1_type -8 201 2 2054 144 3 10 chrX 28819569 28819881 -148154259 + AluJb SINE Alu 1 310 -2 22 0 0 0 chrX 28820012 28820034 -148154106 + AT_rich Low_complexity Low_complexity 1 22 0 2260 88 20 3 chrX 28820572 28820866 -148153274 - AluSx SINE Alu -13 299 1 987 192 10 30 chrX 28820988 28821191 -148152949 - MER3 DNA MER1_type 0 209 11 228 284 95 95 chrX 28821622 28821711 -148152429 - MIR SINE MIR -22 240 149 2481 73 0 3 chrX 28821711 28822014 -148152126 - AluSp SINE Alu -11 302 1 228 284 95 95 chrX 28822014 28822072 -148152068 - MIR SINE MIR -112 150 93 1742 139 12 0 chrX 28822072 28822323 -148151817 + L1PB3 LINE L1 5900 6153 -1 574 195 195 37 chrX 28822503 28822775 -148151365 - L1ME4a LINE L1 -13 6108 5794 24 53 0 0 chrX 28822949 28822987 -148151153 + AT_rich Low_complexity Low_complexity 1 38 0 2048 89 6 80 chrX 28823631 28823955 -148150185 + AluSx SINE Alu 1 300 -12 786 184 11 87 chrX 28824079 28824247 -148149893 + FRAM SINE Alu 1 24 -152 2506 59 0 3 chrX 28824247 28824550 -148149590 + AluY SINE Alu 1 302 -9 786 184 11 87 chrX 28824550 28824566 -148149574 + FRAM SINE Alu 24 40 0 353 39 0 20 chrX 28824752 28824803 -148149337 + AluSc SINE Alu 248 297 -2 724 97 133 0 chrX 28825327 28825440 -148148700 + L1MA3 LINE L1 6173 6300 -5 1734 182 3 7 chrX 28825973 28826269 -148147871 + AluJo SINE Alu 1 295 -17 2145 97 44 7 chrX 28826271 28826569 -148147571 + AluSx SINE Alu 1 309 -3 2060 125 0 42 chrX 28826789 28827102 -148147038 + AluSx SINE Alu 1 300 -12 1385 132 14 0 chrX 28828040 28828253 -148145887 + L1MD2 LINE L1 6143 6358 -1 1479 193 178 54 chrX 28828375 28828886 -148145254 - MLT1F1 LTR MaLR 0 567 2 271 257 0 14 chrX 28829408 28829482 -148144658 + L1ME1 LINE L1 5976 6048 -118 408 139 15 0 chrX 28830006 28830080 -148144060 + L1ME2 LINE L1 6089 6166 0 323 276 91 55 chrX 28830098 28830297 -148143843 + L1MC4 LINE L1 7836 8041 -1 804 154 31 23 chrX 28830645 28830775 -148143365 + FLAM_C SINE Alu 1 131 -2 2352 65 0 14 chrX 28830964 28831256 -148142884 + AluY SINE Alu 17 304 -7 354 284 93 54 chrX 28831333 28831474 -148142666 + MIR SINE MIR 1 154 -108 1813 144 10 23 chrX 28831474 28831773 -148142367 + AluJo SINE Alu 1 295 -17 354 284 93 54 chrX 28831773 28831835 -148142305 + MIR SINE MIR 154 212 -50 1754 190 24 0 chrX 29033889 29034221 -147939919 - MER58B DNA MER1_type -1 340 1 783 293 98 0 chrX 29034473 29034719 -147939421 + L2 LINE L2 2510 2779 -535 1478 270 23 3 chrX 29034758 29035147 -147938993 - LTR16A LTR ERVL -38 412 16 1343 265 58 44 chrX 29035162 29035324 -147938816 + L2 LINE L2 2828 2986 -327 2562 70 0 0 chrX 29035324 29035626 -147938514 - AluY SINE Alu -9 302 1 1343 265 58 44 chrX 29035626 29035942 -147938198 + L2 LINE L2 2986 3313 0 289 193 0 18 chrX 29037197 29037254 -147936886 - LTR67 LTR ERVL -400 157 102 226 298 106 0 chrX 29037431 29037525 -147936615 - L2 LINE L2 0 3272 3169 218 365 0 0 chrX 29038138 29038223 -147935917 - MIR SINE MIR -92 170 86 286 292 28 0 chrX 29038521 29038593 -147935547 + (CATG)n Simple_repeat Simple_repeat 1 74 0 2896 143 0 19 chrX 29038780 29039261 -147934879 - L1PA16 LINE L1 -6 6160 5689 21 0 0 0 chrX 29039582 29039603 -147934537 + AT_rich Low_complexity Low_complexity 1 21 0 208 340 0 0 chrX 29039928 29039975 -147934165 + L2 LINE L2 3138 3184 -88 425 253 65 85 chrX 29040986 29041437 -147932703 - MLT1H LTR MaLR 0 595 114 256 273 20 50 chrX 29041684 29041783 -147932357 + MIR SINE MIR 83 178 -84 23 33 0 0 chrX 29042799 29042829 -147931311 + AT_rich Low_complexity Low_complexity 1 30 0 492 48 0 0 chrX 29042850 29042913 -147931227 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 332 293 75 10 chrX 29043167 29043295 -147930845 - MIR SINE MIR -45 163 25 380 333 97 0 chrX 29043983 29044148 -147929992 + MIR SINE MIR 46 226 -36 2681 98 25 3 chrX 29046481 29046848 -147927292 - THE1C LTR MaLR 0 375 1 3984 90 7 7 chrX 29046851 29047419 -147926721 - THE1C-int LTR MaLR -3 1577 1010 11358 196 13 4 chrX 29047427 29050574 -147923566 - L1P5 LINE L1 -382 6485 3309 * 40859 47 7 0 chrX 29050564 29056679 -147917461 - L1PA4 LINE L1 -1 6154 1 5448 168 58 19 chrX 29056683 29058132 -147916008 - L1P5 LINE L1 -3543 3319 1813 3618 222 204 8 chrX 29058116 29059440 -147914700 - L1P5 LINE L1 -5275 1588 6 * 2031 93 25 140 chrX 29059462 29059911 -147914229 - THE1C-int LTR MaLR -1183 397 1 2218 87 34 48 chrX 29059912 29060291 -147913849 - THE1C LTR MaLR -1 374 1 351 0 0 0 chrX 29060629 29060668 -147913472 + (CA)n Simple_repeat Simple_repeat 2 40 0 552 254 134 17 chrX 29062264 29062496 -147911644 + L1MC4a LINE L1 5574 5832 -1976 1404 280 72 18 chrX 29063139 29063596 -147910544 + LTR16C LTR ERVL 8 489 -2 316 111 16 32 chrX 29063694 29063757 -147910383 - LTR33A LTR ERVL -20 503 442 905 211 6 0 chrX 29063766 29063937 -147910203 - MLT1D LTR MaLR 0 505 334 2920 269 57 48 chrX 29063948 29065299 -147908841 - L1M4 LINE L1 -5179 1363 1 2376 297 46 57 chrX 29065583 29066880 -147907260 - ERVL LTR ERVL -385 5379 4097 1882 169 3 0 chrX 29067096 29067392 -147906748 + AluJb SINE Alu 1 297 -15 425 226 70 26 chrX 29067456 29067571 -147906569 - MIR SINE MIR -11 251 132 2338 132 34 50 chrX 29067781 29068219 -147905921 - Tigger2a DNA MER2_type 0 434 4 432 352 97 5 chrX 29068265 29068481 -147905659 + MIR SINE MIR 20 255 -7 712 98 0 0 chrX 29069702 29069804 -147904336 + FRAM SINE Alu 74 175 -1 1195 171 60 32 chrX 29070600 29070881 -147903259 - MLT1B LTR MaLR -101 289 1 358 226 0 43 chrX 29070893 29070986 -147903154 - MIR SINE MIR -55 207 119 2214 216 40 12 chrX 29071600 29072221 -147901919 - L1MD2 LINE L1 0 6242 5620 685 289 44 4 chrX 29072222 29072668 -147901472 - L1MDb LINE L1 -5860 549 7 255 322 84 42 chrX 29073343 29073486 -147900654 - MIR SINE MIR -94 168 20 222 400 35 9 chrX 29073492 29073607 -147900533 - L2 LINE L2 -19 3253 3136 362 292 10 10 chrX 29074185 29074281 -147899859 + MIR SINE MIR 38 133 -75 1176 216 100 43 chrX 29074293 29074498 -147899642 - MLT1D LTR MaLR -113 392 200 2431 80 3 0 chrX 29074498 29074797 -147899343 + AluSp SINE Alu 1 300 -13 1176 216 100 43 chrX 29074797 29074962 -147899178 - MLT1D LTR MaLR -305 200 1 703 273 115 18 chrX 29074962 29075240 -147898900 + MER69 DNA AcHobo 278 582 -1944 * 1399 198 136 9 chrX 29075225 29075675 -147898465 + MER69 DNA AcHobo 2010 2516 -10 2589 118 12 16 chrX 29077416 29077840 -147896300 - MER39 LTR ERV1 0 707 286 792 164 22 20 chrX 29077841 29078104 -147896036 - LTR32 LTR ERVL 0 471 152 277 195 115 23 chrX 29078813 29078900 -147895240 - MIR SINE MIR -19 243 149 987 243 67 80 chrX 29079143 29079669 -147894471 - LTR33 LTR ERVL 0 521 3 342 189 31 1 chrX 29079930 29080018 -147894122 - MLT1H LTR MaLR -11 531 453 583 262 73 31 chrX 29080094 29080362 -147893778 - MLT1H LTR MaLR -216 333 14 270 0 0 0 chrX 29080790 29080820 -147893320 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 291 28 0 0 chrX 29080819 29080855 -147893285 + (TA)n Simple_repeat Simple_repeat 1 36 0 194 250 0 91 chrX 29081872 29081960 -147892180 - L2 LINE L2 -5 3308 3229 * 214 331 45 11 chrX 29081941 29082057 -147892083 - MIR SINE MIR -71 137 10 299 256 42 3 chrX 29082098 29082210 -147891930 - MIR SINE MIR -63 145 37 279 93 0 0 chrX 29082536 29082579 -147891561 + (GA)n Simple_repeat Simple_repeat 1 43 0 284 254 109 45 chrX 29083236 29083346 -147890794 + MLT1J LTR MaLR 256 372 -139 207 0 0 0 chrX 29083946 29083969 -147890171 + (A)n Simple_repeat Simple_repeat 1 23 0 393 326 34 0 chrX 29084070 29084217 -147889923 - L3 LINE CR1 -10 1567 1416 308 186 114 0 chrX 29084670 29084740 -147889400 + L2 LINE L2 3236 3313 0 505 256 169 5 chrX 29084863 29085166 -147888974 - LTR33 LTR ERVL -12 509 110 1226 334 55 28 chrX 29085247 29085864 -147888276 - L3 LINE CR1 -344 1233 600 342 226 21 21 chrX 29085963 29086056 -147888084 + MER103 DNA DNA 1 93 -73 601 275 65 44 chrX 29086198 29086427 -147887713 + MIR SINE MIR 29 262 0 313 291 27 18 chrX 29086614 29086724 -147887416 + L1ME LINE L1 5276 5386 -760 545 303 6 12 chrX 29086840 29087002 -147887138 - MIR SINE MIR -1 261 101 313 235 15 0 chrX 29087016 29087084 -147887056 + L1ME LINE L1 5557 5625 -496 1306 277 73 15 chrX 29087100 29087511 -147886629 + LTR16A LTR ERVL 16 450 0 238 241 37 0 chrX 29087579 29087633 -147886507 + MLT1J2 LTR MaLR 254 309 -141 639 263 67 50 chrX 29087654 29088012 -147886128 + L1MCc LINE L1 21 384 -6039 1726 243 60 19 chrX 29088137 29089085 -147885055 + L1MCc LINE L1 814 1910 -4851 832 261 70 7 chrX 29089098 29089385 -147884755 - MLT1D LTR MaLR -2 503 199 1214 256 46 46 chrX 29089394 29089925 -147884215 + L1MCc LINE L1 2658 3188 -3753 2378 92 0 13 chrX 29089925 29090240 -147883900 + AluSq SINE Alu 1 311 -2 1214 256 46 46 chrX 29090240 29090313 -147883827 + L1MCc LINE L1 3188 3260 -3681 1996 172 42 3 chrX 29090313 29090668 -147883472 + MER93b LTR ERV1 5 373 0 1214 256 46 46 chrX 29090668 29090778 -147883362 + L1MCc LINE L1 3260 3336 -3605 541 250 73 0 chrX 29090951 29091115 -147883025 + L1MD3 LINE L1 7009 7184 -811 603 240 0 0 chrX 29091130 29091255 -147882885 + MLT1F1 LTR MaLR 1 125 -442 3076 173 39 2 chrX 29091256 29091817 -147882323 + L1MD3 LINE L1 7400 7981 -14 2072 93 23 33 chrX 29091819 29092119 -147882021 - AluY SINE Alu -14 297 1 315 250 42 10 chrX 29092157 29092253 -147881887 + MLT1J2 LTR MaLR 344 442 -8 27 49 0 0 chrX 29092435 29092476 -147881664 + AT_rich Low_complexity Low_complexity 1 41 0 255 259 9 103 chrX 29092579 29092695 -147881445 - MER102a DNA MER1_type -6 324 220 22 0 0 0 chrX 29093121 29093143 -147880997 + AT_rich Low_complexity Low_complexity 1 22 0 272 289 58 10 chrX 29093190 29093294 -147880846 - MIR SINE MIR -141 121 13 21 0 0 0 chrX 29093484 29093505 -147880635 + AT_rich Low_complexity Low_complexity 1 21 0 505 291 111 49 chrX 29093558 29093802 -147880338 - MIR SINE MIR -2 260 2 909 252 29 0 chrX 29094678 29094888 -147879252 + MIR SINE MIR 43 258 -4 1885 146 7 3 chrX 29095161 29095449 -147878691 + AluJb SINE Alu 1 289 -23 231 308 0 26 chrX 29095526 29095604 -147878536 - L2 LINE L2 -61 3252 3177 549 268 252 4 chrX 29095612 29095866 -147878274 + L2 LINE L2 2827 3143 -170 3624 259 40 14 chrX 29095893 29096862 -147877278 - L2 LINE L2 -508 2806 1813 1151 281 97 21 chrX 29096862 29097297 -147876843 - L2 LINE L2 -2846 468 1 787 167 0 8 chrX 29097657 29097783 -147876357 - FLAM_A SINE Alu -8 125 1 186 133 0 0 chrX 29098509 29098539 -147875601 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1334 235 55 48 chrX 29098830 29099264 -147874876 - MLT1J1 LTR MaLR -2 444 8 233 155 17 0 chrX 29100595 29100653 -147873487 + GA-rich Low_complexity Low_complexity 2 60 0 252 0 0 0 chrX 29101999 29102027 -147872113 + (T)n Simple_repeat Simple_repeat 1 28 0 1304 306 47 10 chrX 29102707 29103112 -147871028 + LTR16C LTR ERVL 71 490 -1 615 252 96 28 chrX 29103503 29103798 -147870342 + LTR33 LTR ERVL 173 521 0 372 277 6 77 chrX 29103798 29103976 -147870164 + MIR SINE MIR 25 189 -73 1205 176 0 0 chrX 29104391 29104579 -147869561 + MER5A DNA MER1_type 2 189 0 1312 228 42 9 chrX 29104751 29105189 -147868951 - MLT1E LTR MaLR 0 593 46 1319 227 50 34 chrX 29105351 29105786 -147868354 - MLT1-int LTR MaLR -766 605 37 402 355 35 12 chrX 29106304 29106476 -147867664 + MER5B DNA MER1_type 1 176 -2 320 152 15 0 chrX 29106678 29106744 -147867396 + CT-rich Low_complexity Low_complexity 3 69 0 1852 200 42 97 chrX 29107511 29108115 -147866025 - L1ME1 LINE L1 -7 6159 5592 4868 104 5 36 chrX 29108115 29108868 -147865272 + L1PB3 LINE L1 5420 6149 -5 1852 200 42 97 chrX 29108868 29108924 -147865216 - L1ME1 LINE L1 -574 5592 5535 346 273 34 0 chrX 29108927 29109015 -147865125 + L1MC4 LINE L1 6612 6702 -1340 293 0 27 0 chrX 29109035 29109072 -147865068 + (GA)n Simple_repeat Simple_repeat 2 39 0 1644 156 0 56 chrX 29109098 29109386 -147864754 - AluJo SINE Alu -40 272 1 393 193 31 76 chrX 29109388 29109549 -147864591 - L1ME1 LINE L1 -682 5484 5336 * 993 197 76 90 chrX 29109528 29109974 -147864166 - L1ME1 LINE L1 -2539 3607 3168 267 329 24 0 chrX 29110102 29110184 -147863956 + LTR16C LTR ERVL 408 491 0 240 318 111 40 chrX 29110311 29110437 -147863703 + L2 LINE L2 3138 3272 0 1255 172 152 0 chrX 29110554 29110832 -147863308 + AluJb SINE Alu 3 317 0 833 136 0 0 chrX 29111046 29111164 -147862976 + FLAM_C SINE Alu 1 118 -15 24 32 0 0 chrX 29111164 29111195 -147862945 + AT_rich Low_complexity Low_complexity 1 31 0 745 261 40 13 chrX 29111479 29111705 -147862435 + MIR SINE MIR 3 234 -28 1425 162 99 51 chrX 29112178 29112533 -147861607 - MLT1A1 LTR MaLR 0 396 1 231 114 0 0 chrX 29114072 29114107 -147860033 + (TG)n Simple_repeat Simple_repeat 2 36 0 411 310 37 21 chrX 29114109 29114296 -147859844 + MIR SINE MIR 11 200 -62 706 340 49 4 chrX 29114296 29114543 -147859597 - MIR SINE MIR -3 259 2 998 186 5 26 chrX 29114929 29115122 -147859018 - MER5A DNA MER1_type 0 189 1 715 214 77 6 chrX 29115132 29115300 -147858840 - MER58A DNA MER1_type -1 223 44 327 333 108 22 chrX 29115357 29115672 -147858468 - L2 LINE L2 -1175 2139 1798 1001 244 56 30 chrX 29115709 29115975 -147858165 + MLT1H1 LTR MaLR 1 273 -282 1033 135 36 26 chrX 29115976 29116168 -147857972 - THE1C LTR MaLR -2 373 180 864 293 95 8 chrX 29118893 29119262 -147854878 + MLT1I LTR MaLR 1 401 -8 385 312 89 49 chrX 29119684 29120212 -147853928 + L1ME4a LINE L1 4416 4961 -1185 336 294 68 25 chrX 29120475 29120638 -147853502 + L1ME4a LINE L1 5303 5472 -2336 392 206 6 120 chrX 29120768 29120943 -147853197 + L1ME4a LINE L1 5967 6121 0 431 326 87 26 chrX 29121432 29122048 -147852092 - L1ME2 LINE L1 -258 5975 5327 2029 247 138 25 chrX 29122442 29122964 -147851176 - MLT1G LTR MaLR 0 590 10 1816 248 48 13 chrX 29123680 29124221 -147849919 - L1ME2 LINE L1 -2332 3883 3324 6928 245 37 39 chrX 29124224 29124648 -147849492 - L1ME2 LINE L1 -2944 3271 2848 2812 10 0 0 chrX 29124648 29124954 -147849186 - AluYa5 SINE Alu -5 306 1 6928 245 37 39 chrX 29124954 29125261 -147848879 - L1ME2 LINE L1 -3367 2848 2542 2101 112 0 14 chrX 29125261 29125576 -147848564 + AluSx SINE Alu 1 311 0 6928 245 37 39 chrX 29125576 29127397 -147846743 - L1ME2 LINE L1 -3673 2542 768 2871 70 8 3 chrX 29127397 29127780 -147846360 - L1PA13 LINE L1 -11 6152 5768 6928 245 37 39 chrX 29127780 29128511 -147845629 - L1ME2 LINE L1 -5447 768 37 1657 184 93 37 chrX 29128946 29129321 -147844819 - MSTD LTR MaLR 0 396 1 22 88 0 0 chrX 29130357 29130414 -147843726 + AT_rich Low_complexity Low_complexity 1 57 0 647 292 74 20 chrX 29130504 29130894 -147843246 - L1ME4a LINE L1 -175 5946 5536 17585 44 1 0 chrX 29131820 29134758 -147839382 + L1PA5 LINE L1 3210 6150 -4 956 261 109 40 chrX 29134758 29135087 -147839053 + MLT1H LTR MaLR 91 442 -107 21 36 0 0 chrX 29136262 29136290 -147837850 + AT_rich Low_complexity Low_complexity 1 28 0 450 113 56 0 chrX 29136349 29136420 -147837720 - Charlie3 DNA MER1_type -9 2701 2627 734 291 205 25 chrX 29136522 29136917 -147837223 + L2 LINE L2 2848 3313 0 297 109 0 0 chrX 29136936 29136982 -147837158 + (TG)n Simple_repeat Simple_repeat 1 46 0 1580 155 15 4 chrX 29137130 29137394 -147836746 - AluJo SINE Alu -3 309 43 320 332 38 38 chrX 29138804 29138986 -147835154 - MIR SINE MIR -50 212 33 818 220 28 0 chrX 29138996 29139178 -147834962 + MER5A DNA MER1_type 1 187 -2 216 214 0 0 chrX 29139349 29139391 -147834749 + A-rich Low_complexity Low_complexity 1 42 0 2353 224 35 26 chrX 29140017 29140739 -147833401 + L1M4 LINE L1 3881 4608 -1538 210 302 0 0 chrX 29140790 29140853 -147833287 + MIR SINE MIR 200 262 0 1486 275 80 43 chrX 29141161 29142426 -147831714 + L1ME LINE L1 51 1333 -4747 14790 161 85 7 chrX 29142435 29146581 -147827559 + L1PBa LINE L1 1 4470 -2392 348 24 0 0 chrX 29146587 29146628 -147827512 + (CA)n Simple_repeat Simple_repeat 2 42 0 2686 92 0 5 chrX 29146628 29146993 -147827147 + L1PB1 LINE L1 5788 6150 -1 280 254 0 0 chrX 29147073 29147140 -147827000 + L1ME LINE L1 1386 1452 -4809 230 261 58 35 chrX 29147169 29147395 -147826745 - L1M4 LINE L1 -820 5326 5096 765 181 112 32 chrX 29147565 29147753 -147826387 + L1MD2 LINE L1 6146 6348 -11 314 286 68 15 chrX 29147779 29147912 -147826228 + MARNA DNA Mariner 370 509 -77 414 257 125 13 chrX 29148010 29148162 -147825978 - MIR SINE MIR -39 223 55 960 201 211 27 chrX 29148646 29149133 -147825007 - Charlie2 DNA MER1_type -4 2858 2282 4797 89 9 12 chrX 29149139 29149804 -147824336 - L1PA10 LINE L1 -116 6052 5390 1311 243 51 9 chrX 29149804 29150232 -147823908 - Charlie2 DNA MER1_type -564 2298 1853 698 233 54 66 chrX 29150220 29150478 -147823662 - Charlie2 DNA MER1_type -2452 330 76 * 723 290 0 11 chrX 29150596 29150779 -147823361 + MIR SINE MIR 41 221 -41 5034 206 31 11 chrX 29151289 29152301 -147821839 - MER45B DNA AcHobo -8 1032 1 503 285 29 0 chrX 29152577 29152714 -147821426 + LTR16A LTR ERVL 96 236 -214 470 146 19 39 chrX 29152747 29152850 -147821290 - MER53 DNA DNA -88 101 1 380 276 16 0 chrX 29152850 29152961 -147821179 + LTR16A LTR ERVL 242 354 -96 239 221 12 0 chrX 29153239 29153325 -147820815 + (TA)n Simple_repeat Simple_repeat 2 88 0 621 323 26 18 chrX 29153525 29153754 -147820386 + MIR SINE MIR 2 232 -30 28 29 0 0 chrX 29153754 29153789 -147820351 + AT_rich Low_complexity Low_complexity 1 35 0 209 293 4 21 chrX 29154649 29154729 -147819411 - MER5A DNA MER1_type -98 91 2 183 80 0 0 chrX 29155051 29155076 -147819064 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 235 357 0 0 chrX 29155078 29155134 -147819006 - L2 LINE L2 -12 3260 3205 528 287 89 25 chrX 29155737 29155939 -147818201 - MIR SINE MIR 0 262 48 395 270 66 66 chrX 29156998 29157135 -147817005 + L2 LINE L2 3136 3272 0 1402 298 95 4 chrX 29157362 29157836 -147816304 + MER69 DNA AcHobo 2 518 -708 * 1431 206 64 0 chrX 29157831 29158175 -147815965 + MER69 DNA AcHobo 2161 2526 0 2700 39 0 0 chrX 29158491 29158801 -147815339 - AluY SINE Alu -1 310 1 1478 272 79 10 chrX 29159240 29159721 -147814419 + LTR33 LTR ERVL 1 514 -7 411 254 65 53 chrX 29160616 29160785 -147813355 + HAL1 LINE L1 1014 1184 -1323 5927 175 26 2 chrX 29160844 29162880 -147811260 - L1PA16 LINE L1 -9 6157 4074 279 0 0 0 chrX 29162921 29162952 -147811188 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 43179 47 6 6 chrX 29162955 29169112 -147805028 - L1PA3 LINE L1 -3 6152 1 2958 218 51 19 chrX 29169109 29169860 -147804280 - L1PA16 LINE L1 -2058 4088 3314 * 243 358 24 41 chrX 29170241 29170364 -147803776 - L2 LINE L2 0 3272 3152 375 105 0 0 chrX 29170725 29170782 -147803358 + (TC)n Simple_repeat Simple_repeat 2 58 0 261 0 0 0 chrX 29170782 29170811 -147803329 + (CA)n Simple_repeat Simple_repeat 1 29 0 2053 215 40 7 chrX 29172136 29172731 -147801409 - L1MD2 LINE L1 -1 6358 5695 4760 209 114 30 chrX 29172741 29174054 -147800086 - L1MDa LINE L1 -4666 1874 117 2461 89 0 3 chrX 29174054 29174368 -147799772 - AluSq SINE Alu 0 313 1 4760 209 114 30 chrX 29174368 29174476 -147799664 - L1MDa LINE L1 -6423 117 19 192 77 0 0 chrX 29175156 29175182 -147798958 + (A)n Simple_repeat Simple_repeat 1 26 0 659 243 45 28 chrX 29175284 29175461 -147798679 - MER5A DNA MER1_type -1 188 9 264 111 0 0 chrX 29177305 29177350 -147796790 + (GA)n Simple_repeat Simple_repeat 1 45 0 2011 235 122 7 chrX 29177790 29178378 -147795762 + L1ME3 LINE L1 5507 6162 0 182 37 37 0 chrX 29178636 29178663 -147795477 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 28 29 0 0 chrX 29178712 29178747 -147795393 + AT_rich Low_complexity Low_complexity 1 35 0 281 302 19 38 chrX 29179843 29179949 -147794191 - L2 LINE L2 -914 2400 2297 5168 215 54 27 chrX 29179992 29181251 -147792889 + L1M4 LINE L1 1 1293 -5249 306 258 0 0 chrX 29181353 29181419 -147792721 - MLT1-int LTR MaLR -635 736 671 * 7368 228 30 9 chrX 29181394 29183416 -147790724 + L1M4 LINE L1 2713 4776 -1868 2472 70 3 0 chrX 29383791 29384091 -147590049 + AluSp SINE Alu 1 301 -12 315 299 47 47 chrX 29384425 29384639 -147589501 - L2 LINE L2 -1 3312 3099 384 331 174 32 chrX 29384696 29385104 -147589036 - L2 LINE L2 -342 2972 2507 416 312 29 6 chrX 29385120 29385290 -147588850 - L2 LINE L2 -944 2370 2197 258 224 35 0 chrX 29385412 29385470 -147588670 + MIR SINE MIR 82 141 -121 1675 224 86 24 chrX 29385490 29385898 -147588242 - LTR33 LTR ERVL 0 521 77 3217 140 88 2 chrX 29385898 29386412 -147587728 + LTR64 LTR ERVK 1 558 0 1675 224 86 24 chrX 29386412 29386494 -147587646 - LTR33 LTR ERVL -444 77 1 257 320 13 0 chrX 29386500 29386575 -147587565 + MIR SINE MIR 177 252 -10 216 0 0 0 chrX 29386616 29386640 -147587500 + (TA)n Simple_repeat Simple_repeat 2 25 0 1019 315 26 22 chrX 29386662 29387116 -147587024 - L1ME LINE L1 -338 5783 5328 8019 27 2 0 chrX 29387259 29388241 -147585899 + L1PA4 LINE L1 5188 6171 0 2313 110 0 0 chrX 29388374 29388674 -147585466 - AluSx SINE Alu -12 300 1 330 306 90 90 chrX 29388679 29389146 -147584994 - L1ME LINE L1 -1120 5026 4560 363 283 35 112 chrX 29389200 29389486 -147584654 - HAL1b LINE L1 -985 363 100 1446 216 101 78 chrX 29389774 29390149 -147583991 + L1MC4a LINE L1 5518 5914 -1894 2372 81 3 0 chrX 29390149 29390445 -147583695 + AluSp SINE Alu 1 297 -16 1446 216 101 78 chrX 29390445 29390661 -147583479 + L1MC4a LINE L1 5914 6123 -1685 2288 255 72 43 chrX 29391161 29391621 -147582519 + L1MC4 LINE L1 6971 7416 -626 2481 71 3 0 chrX 29391621 29391918 -147582222 + AluSp SINE Alu 1 298 -15 2288 255 72 43 chrX 29391918 29392272 -147581868 + L1MC4 LINE L1 7416 7758 -284 1305 393 3 13 chrX 29392272 29392572 -147581568 - AluSx SINE Alu -15 297 1 2288 255 72 43 chrX 29392572 29392672 -147581468 + L1MC4 LINE L1 7758 7854 -188 2239 118 0 3 chrX 29392672 29392977 -147581163 + AluSp SINE Alu 1 304 -9 2288 255 72 43 chrX 29392977 29393087 -147581053 + L1MC4 LINE L1 7854 8027 -15 270 307 35 9 chrX 29393117 29393231 -147580909 + HAL1 LINE L1 1557 1673 -834 248 350 86 0 chrX 29393473 29393590 -147580550 - LTR16A LTR ERVL -323 127 1 1019 193 78 46 chrX 29393595 29393813 -147580327 + MER45B DNA AcHobo 1 225 -815 750 177 0 31 chrX 29393839 29393969 -147580171 - FLAM_A SINE Alu -7 126 1 405 182 0 0 chrX 29393980 29394046 -147580094 + MER45B DNA AcHobo 975 1040 0 923 216 131 5 chrX 29394322 29394544 -147579596 + MLT1J LTR MaLR 1 250 -261 393 185 65 0 chrX 29394615 29394707 -147579433 + MLT1J LTR MaLR 414 511 0 1301 256 82 54 chrX 29396134 29396637 -147577503 + LTR33 LTR ERVL 2 518 -3 2312 79 0 30 chrX 29396747 29397052 -147577088 + AluSx SINE Alu 1 296 -16 881 194 59 11 chrX 29397728 29397914 -147576226 + Charlie4 DNA MER1_type 1 195 -1766 * 2149 105 0 41 chrX 29397912 29398127 -147576013 + MER84 LTR ERVI 206 405 -102 2148 124 0 0 chrX 29398127 29398426 -147575714 + AluSx SINE Alu 5 303 -9 2149 105 0 41 chrX 29398426 29398525 -147575615 + MER84 LTR ERVI 405 507 0 16972 87 24 8 chrX 29398525 29400768 -147573372 + MER84-int LTR ERV1 1 2280 -2674 10562 106 26 8 chrX 29400764 29402242 -147571898 + MER84-int LTR ERV1 3451 4954 0 * 3859 107 4 4 chrX 29402242 29402749 -147571391 + MER84 LTR ERV1 1 507 0 2588 148 138 16 chrX 29402751 29403251 -147570889 - LTR48 LTR ERV1 -226 561 1 982 221 147 81 chrX 29403268 29403798 -147570342 + MER34B LTR ERV1 1 565 0 385 156 0 0 chrX 29404014 29404078 -147570062 + L1MC4a LINE L1 7626 7689 -119 2320 100 3 0 chrX 29405130 29405430 -147568710 - AluSq SINE Alu -12 301 1 3848 122 61 42 chrX 29405504 29406145 -147567995 + MER39B LTR ERV1 1 653 0 2179 92 55 0 chrX 29406341 29406633 -147567507 - AluSg SINE Alu -2 308 1 2638 218 10 58 chrX 29406651 29407132 -147567008 - L1ME1 LINE L1 -5 6161 5722 2267 107 3 0 chrX 29407132 29407431 -147566709 + AluSx SINE Alu 1 300 -12 2638 218 10 58 chrX 29407431 29407645 -147566495 - L1ME1 LINE L1 -444 5722 5499 549 297 97 35 chrX 29408901 29409365 -147564775 - L1ME4a LINE L1 -236 5885 5393 718 284 70 87 chrX 29409794 29410239 -147563901 - LTR16A LTR ERVL -13 437 1 811 220 104 33 chrX 29411546 29411787 -147562353 - L1ME3A LINE L1 -2 6168 5911 480 285 106 0 chrX 29411905 29412028 -147562112 - L2 LINE L2 -1 3271 3136 614 141 0 10 chrX 29412041 29412140 -147562000 + MER4A LTR ERV1 1 98 -566 1352 102 194 98 chrX 29412140 29412455 -147561685 + MER4A LTR ERV1 261 605 -59 201 340 0 0 chrX 29412619 29412722 -147561418 + (CCCCAG)n Simple_repeat Simple_repeat 4 106 0 516 269 65 32 chrX 29414157 29414343 -147559797 - MIR SINE MIR -7 255 64 321 26 0 0 chrX 29414601 29414639 -147559501 + (TG)n Simple_repeat Simple_repeat 1 38 0 351 199 0 37 chrX 29414648 29414809 -147559331 + (TA)n Simple_repeat Simple_repeat 2 156 0 216 67 0 0 chrX 29415493 29415523 -147558617 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 592 198 8 24 chrX 29415931 29416057 -147558083 + MER69 DNA AcHobo 2400 2523 -3 1559 131 67 29 chrX 29417032 29417455 -147556685 + LTR48-int LTR ERV1 150 686 -5912 189 0 0 0 chrX 29417536 29417557 -147556583 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1474 226 39 7 chrX 29417605 29417910 -147556230 + LTR48-int LTR ERV1 1854 2168 -4163 6032 106 72 23 chrX 29417971 29418307 -147555833 + LTR48-int LTR ERV1 198 516 -6242 2506 63 7 0 chrX 29418307 29418608 -147555532 + AluY SINE Alu 1 303 -8 6032 106 72 23 chrX 29418608 29418716 -147555424 + LTR48-int LTR ERV1 516 617 -6141 2512 112 77 26 chrX 29418716 29419144 -147554996 - LTR7 LTR ERV1 0 450 1 6032 106 72 23 chrX 29419144 29419614 -147554526 + LTR48-int LTR ERV1 617 1158 -5600 4564 86 53 9 chrX 29419636 29420337 -147553803 + LTR48-int LTR ERV1 1764 2495 -4103 1420 146 75 0 chrX 29420337 29420576 -147553564 - LTR8 LTR ERV1 -434 257 1 3975 127 119 39 chrX 29420576 29420799 -147553341 + LTR48-int LTR ERV1 2737 2941 -3657 2462 39 0 0 chrX 29420799 29421142 -147552998 - AluY SINE Alu 0 343 1 3975 127 119 39 chrX 29421142 29421791 -147552349 + LTR48-int LTR ERV1 2941 3681 -2917 * 7164 94 43 32 chrX 29421790 29422918 -147551222 + LTR48-int LTR ERV1 3837 4977 -1621 1736 90 35 4 chrX 29422896 29423151 -147550989 + LTR48-int LTR ERV1 4502 4764 -251 * 718 155 11 33 chrX 29423161 29423342 -147550798 + GA-rich Low_complexity Low_complexity 3 179 0 3241 188 85 3 chrX 29423344 29424005 -147550135 + LTR48 LTR ERV1 62 776 -11 1013 128 0 6 chrX 29424116 29424272 -147549868 + MER41A LTR ERV1 400 554 0 2565 47 0 0 chrX 29424348 29424644 -147549496 - AluY SINE Alu -15 296 1 419 327 165 26 chrX 29425077 29425658 -147548482 + L2 LINE L2 1710 2371 -943 3114 137 74 2 chrX 29425658 29426171 -147547969 + MER34B LTR ERV1 16 565 0 502 264 7 14 chrX 29426387 29426535 -147547605 + L2 LINE L2 3167 3313 0 17470 158 26 22 chrX 29426918 29429113 -147545027 + L1M1 LINE L1 25 2238 -5327 2438 85 0 0 chrX 29429113 29429418 -147544722 + AluSg SINE Alu 1 305 -5 17470 158 26 22 chrX 29429418 29430179 -147543961 + L1M1 LINE L1 2238 2994 -4571 261 143 143 0 chrX 29430308 29430357 -147543783 - MER58 DNA MER1_type -284 57 2 186 321 104 52 chrX 29430481 29430615 -147543525 - MIR SINE MIR -102 160 20 194 265 44 73 chrX 29430654 29430722 -147543418 - MIR SINE MIR -76 132 67 261 281 83 0 chrX 29431067 29431163 -147542977 + MLT1H1 LTR MaLR 439 542 -13 4457 182 76 55 chrX 29431268 29432267 -147541873 + LTR28 LTR ERV1 1 1020 0 1758 190 23 0 chrX 29434992 29435297 -147538843 + AluJo SINE Alu 1 312 0 1973 133 39 0 chrX 29435337 29435616 -147538524 + AluSx SINE Alu 1 290 -22 232 194 14 56 chrX 29436530 29436602 -147537538 + L1ME4a LINE L1 5959 6027 -94 821 278 44 7 chrX 29436624 29436897 -147537243 + LTR16C LTR ERVL 1 283 -208 508 260 158 15 chrX 29436897 29437093 -147537047 - MER58A DNA MER1_type 0 224 1 * 584 282 47 33 chrX 29437093 29437304 -147536836 + LTR16C LTR ERVL 276 489 -2 2439 72 3 34 chrX 29437859 29438180 -147535960 - AluSp SINE Alu -2 311 1 501 228 25 56 chrX 29438239 29438436 -147535704 + L1ME3A LINE L1 5965 6155 -15 582 277 38 107 chrX 29438476 29439036 -147535104 - MER34 LTR ERV1 0 542 22 1396 73 5 55 chrX 29439607 29439755 -147534385 - L1MA2 LINE L1 -9 6295 6160 2073 107 45 3 chrX 29439755 29440045 -147534095 - AluSx SINE Alu -10 302 1 1396 73 5 55 chrX 29440045 29440116 -147534024 - L1MA2 LINE L1 -144 6160 6087 310 275 36 28 chrX 29440670 29440874 -147533266 - HERV3 LTR ERV1 -2935 5112 4451 1160 98 6 0 chrX 29442872 29443045 -147531095 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 2422 205 85 74 chrX 29444347 29445302 -147528838 - HERV3 LTR ERV1 -5185 1146 321 701 267 29 125 chrX 29445645 29446229 -147527911 - MER34 LTR ERV1 -1 541 14 276 376 16 11 chrX 29446451 29446640 -147527500 + LTR16B LTR ERVL 125 314 -150 277 172 0 0 chrX 29446666 29446724 -147527416 + LTR1B LTR ERV1 1 58 -768 324 216 12 81 chrX 29446730 29446896 -147527244 + LTR1B LTR ERV1 675 1020 0 1030 167 69 0 chrX 29447082 29447197 -147526943 + AluJo SINE Alu 1 133 -179 567 43 0 0 chrX 29447197 29447267 -147526873 + (CA)n Simple_repeat Simple_repeat 2 71 0 1030 167 69 0 chrX 29447267 29447325 -147526815 + AluJo SINE Alu 133 186 -126 2609 112 27 66 chrX 29447325 29447875 -147526265 - LTR10A LTR ERV1 -17 616 47 670 190 126 44 chrX 29447895 29448207 -147525933 + MER31B LTR ERV1 8 466 0 1767 120 7 11 chrX 29448479 29448754 -147525386 + LTR10A LTR ERV1 204 477 -132 21 0 0 0 chrX 29448919 29448940 -147525200 + AT_rich Low_complexity Low_complexity 1 21 0 637 284 52 52 chrX 29449667 29449995 -147524145 + Charlie2 DNA MER1_type 14 341 -2521 1993 193 42 14 chrX 29449996 29450586 -147523554 + Charlie2 DNA MER1_type 2221 2827 -35 237 239 15 0 chrX 29450587 29450654 -147523486 - L1MD3 LINE L1 -20 7975 7908 2348 173 32 19 chrX 29450697 29451171 -147522969 + MER89 LTR ERV1 71 550 -9 4145 214 54 32 chrX 29451181 29451522 -147522618 - L1MC3 LINE L1 -793 6992 6660 207 88 0 0 chrX 29451522 29451556 -147522584 + (CA)n Simple_repeat Simple_repeat 2 35 0 4145 214 54 32 chrX 29451556 29452490 -147521650 - L1MC3 LINE L1 -1125 6660 5689 297 0 0 0 chrX 29452497 29452530 -147521610 + (TCTA)n Simple_repeat Simple_repeat 3 35 0 307 254 87 48 chrX 29452534 29452660 -147521480 - MLT2C1 LTR ERVL -55 342 212 231 189 27 14 chrX 29452660 29452734 -147521406 + CT-rich Low_complexity Low_complexity 1 75 0 469 261 79 6 chrX 29452743 29452908 -147521232 - MLT2C1 LTR ERVL -203 194 18 1163 142 32 28 chrX 29452913 29453131 -147521009 - THE1C LTR MaLR -156 219 1 2068 262 22 18 chrX 29453134 29453867 -147520273 - L1M4 LINE L1 -1774 4372 3637 279 258 0 32 chrX 29453895 29453988 -147520152 + Charlie2 DNA MER1_type 2773 2862 0 489 352 12 47 chrX 29454222 29454543 -147519597 + LTR16A1 LTR ERVL 148 457 0 335 345 106 29 chrX 29454718 29454964 -147519176 + L2 LINE L2 3008 3272 0 3830 191 53 16 chrX 29455149 29456149 -147517991 + L1PA12 LINE L1 2 1317 -6264 2401 94 3 0 chrX 29456170 29456477 -147517663 - AluSp SINE Alu -5 308 1 849 226 35 9 chrX 29456492 29456722 -147517418 - L1MC4 LINE L1 -1040 7002 6767 1190 87 7 0 chrX 29456722 29456872 -147517268 - AluSp SINE Alu -162 151 1 2985 234 11 15 chrX 29456872 29457526 -147516614 + L1PA12 LINE L1 1035 1685 -5896 * 3534 171 9 6 chrX 29457523 29458236 -147515904 + L1PA12 LINE L1 2433 3151 -4433 5030 218 21 3 chrX 29458242 29459468 -147514672 + L1PA12 LINE L1 3452 4702 -2882 2326 29 0 11 chrX 29459468 29459746 -147514394 + L1PA3 LINE L1 5878 6155 0 598 231 24 0 chrX 29460109 29460278 -147513862 + L1PA12 LINE L1 4690 4862 -2722 403 91 45 0 chrX 29460281 29460347 -147513793 + MSTB LTR MaLR 358 426 0 306 277 11 36 chrX 29461195 29461331 -147512809 - MIR SINE MIR -59 203 73 261 0 0 0 chrX 29461558 29461587 -147512553 + (A)n Simple_repeat Simple_repeat 1 29 0 4099 61 0 32 chrX 29461820 29462209 -147511931 - L1PA7 LINE L1 0 6154 5787 2507 77 0 0 chrX 29462209 29462520 -147511620 - AluY SINE Alu 0 311 1 4099 61 0 32 chrX 29462520 29462691 -147511449 - L1PA7 LINE L1 -367 5787 5612 273 335 89 25 chrX 29462772 29462930 -147511210 + MER91A DNA MER1_type 4 171 -25 5484 151 10 19 chrX 29465453 29466465 -147507675 - L1MA10 LINE L1 0 6334 5332 1410 146 232 6 chrX 29466465 29466788 -147507352 + MSTD LTR MaLR 1 396 0 2654 188 4 2 chrX 29466790 29467337 -147506803 - L1MA10 LINE L1 -812 5334 4787 * 5133 179 36 33 chrX 29467334 29468502 -147505638 + L1MC3 LINE L1 6614 7784 -1 1574 211 22 14 chrX 29468520 29468875 -147505265 + L1MD2 LINE L1 26 383 -6157 1052 209 38 14 chrX 29468885 29469172 -147504968 + L1MD2 LINE L1 4156 4449 -2091 * 1080 219 184 16 chrX 29469157 29469531 -147504609 + L1MD2 LINE L1 5874 6310 -49 654 113 0 0 chrX 29469536 29469633 -147504507 + AluSg/x SINE Alu 211 307 -3 2281 232 17 69 chrX 29469689 29470587 -147503553 + L1MD2 LINE L1 4448 5298 -1242 332 100 0 0 chrX 29470588 29470638 -147503502 - L1P LINE L1 -1412 4734 4685 * 3332 167 24 6 chrX 29470636 29471296 -147502844 + L1P LINE L1 4710 5381 -765 2063 189 65 0 chrX 29471294 29471755 -147502385 + L1MD2 LINE L1 6037 6527 -226 * 393 282 80 11 chrX 29471771 29471959 -147502181 - MER69 DNA AcHobo -2086 440 240 281 292 52 10 chrX 29472172 29472268 -147501872 - MER5A DNA MER1_type 0 189 90 220 296 93 9 chrX 29473165 29473273 -147500867 - MIR SINE MIR 0 262 146 244 244 70 70 chrX 29473277 29473433 -147500707 - LTR16C LTR ERVL -10 481 326 468 288 42 24 chrX 29473813 29474025 -147500115 - LTR16B LTR ERVL -13 451 236 260 298 58 19 chrX 29474550 29474654 -147499486 + LTR67 LTR ERVL 408 515 -42 182 65 65 0 chrX 29474711 29474742 -147499398 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 365 186 0 14 chrX 29474753 29474823 -147499317 - AluY SINE Alu -108 193 125 256 271 0 0 chrX 29475088 29475158 -147498982 - MER63 DNA MER1_type 0 1062 993 1492 270 87 15 chrX 29475440 29475970 -147498170 - MLT1G LTR MaLR -12 578 11 2533 54 0 22 chrX 29476138 29476455 -147497685 - AluY SINE Alu -1 310 1 426 343 113 59 chrX 29476735 29477868 -147496272 - L2 LINE L2 -44 3228 2035 250 270 30 0 chrX 29478376 29478476 -147495664 - L1ME LINE L1 -299 5822 5720 982 220 15 104 chrX 29478679 29478960 -147495180 - Charlie7 DNA MER1_type -1952 660 424 282 116 0 0 chrX 29478960 29479003 -147495137 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 982 220 15 104 chrX 29479003 29479126 -147495014 - Charlie7 DNA MER1_type -2188 424 292 249 250 53 66 chrX 29479203 29479281 -147494859 - Charlie7 DNA MER1_type -2462 150 73 2555 113 14 3 chrX 29479281 29479652 -147494488 + THE1C LTR MaLR 1 375 0 249 250 53 66 chrX 29479652 29479725 -147494415 - Charlie7 DNA MER1_type -2539 73 1 386 220 40 40 chrX 29480174 29480274 -147493866 - MIR SINE MIR 0 262 163 561 317 0 15 chrX 29480285 29480484 -147493656 - HERVL LTR ERVL -2453 3201 3006 2399 192 33 48 chrX 29480742 29481372 -147492768 + L1MC4a LINE L1 7187 7807 -1 344 291 201 8 chrX 29481413 29481547 -147492593 + MIR3 SINE MIR 49 208 0 213 360 59 73 chrX 29481563 29481849 -147492291 - L2 LINE L2 0 3272 2991 2725 230 22 19 chrX 29482147 29482820 -147491320 - L1ME3A LINE L1 -8 6162 5488 8624 107 9 33 chrX 29482870 29483476 -147490664 + HSMAR2 DNA Mariner 2 621 -681 1437 167 48 87 chrX 29483476 29483787 -147490353 - AluJb SINE Alu -13 299 1 8624 107 9 33 chrX 29483787 29484513 -147489627 + HSMAR2 DNA Mariner 621 1302 0 281 185 19 25 chrX 29484517 29484610 -147489530 - L1ME3A LINE L1 -775 5393 5298 1585 204 49 33 chrX 29484640 29485008 -147489132 - MLT1A2 LTR MaLR 0 374 1 1788 153 24 10 chrX 29485137 29485432 -147488708 - AluJo SINE Alu -13 299 1 356 222 94 17 chrX 29485542 29485659 -147488481 - MIR SINE MIR -52 210 85 348 303 90 21 chrX 29485955 29486143 -147487997 + L1MC3 LINE L1 4 204 -6222 1513 184 37 105 chrX 29486155 29486556 -147487584 - MLT1A2 LTR MaLR 0 374 1 8440 237 41 40 chrX 29486556 29490107 -147484033 + L1MC3 LINE L1 2405 5950 -476 1586 193 20 10 chrX 29490107 29490403 -147483737 + AluJb SINE Alu 1 299 -13 8440 237 41 40 chrX 29490403 29490547 -147483593 + L1MC3 LINE L1 5950 5261 -1165 877 176 0 29 chrX 29490547 29490717 -147483423 + FRAM SINE Alu 2 166 0 8440 237 41 40 chrX 29490717 29491142 -147482998 + L1MC3 LINE L1 5260 5683 -743 6698 165 74 66 chrX 29492848 29493718 -147480422 + L1MC3 LINE L1 6483 7456 -609 280 256 12 23 chrX 29493718 29493804 -147480336 + MLT1F1 LTR MaLR 24 108 -459 6698 165 74 66 chrX 29493804 29494419 -147479721 + L1MC3 LINE L1 7456 8065 0 1649 251 124 26 chrX 29494883 29494936 -147479204 + L2 LINE L2 2257 2303 -1010 1069 292 100 12 chrX 29494936 29495415 -147478725 + LTR33 LTR ERVL 1 521 0 1649 251 124 26 chrX 29495415 29496318 -147477822 + L2 LINE L2 2303 3313 0 300 254 0 53 chrX 29497783 29497897 -147476243 + L1MC4 LINE L1 7934 8041 -1 3613 117 0 4 chrX 29498328 29498841 -147475299 - MER9 LTR ERVK 0 511 1 182 200 18 55 chrX 29499130 29499185 -147474955 - L2 LINE L2 -8 3305 3253 3052 204 25 37 chrX 29499225 29500161 -147473979 - L1M1 LINE L1 -6296 1269 12 874 193 72 5 chrX 29500167 29500374 -147473766 - L1M4 LINE L1 -1393 4753 4533 26 0 0 0 chrX 29500374 29500400 -147473740 + AT_rich Low_complexity Low_complexity 1 26 0 302 225 144 6 chrX 29500410 29500570 -147473570 + Charlie2 DNA MER1_type 2241 2422 -440 2076 187 42 47 chrX 29500572 29500995 -147473145 - L1M4 LINE L1 -1601 4545 4124 2327 86 10 10 chrX 29500995 29501308 -147472832 + AluSp SINE Alu 1 313 0 2076 187 42 47 chrX 29501308 29501435 -147472705 - L1M4 LINE L1 -2022 4124 3998 484 227 43 39 chrX 29501524 29501731 -147472409 - L1MEc LINE L1 -3584 3060 2853 940 279 132 42 chrX 29501732 29503207 -147470933 - L1MEc LINE L1 -4001 2824 1218 1832 137 102 38 chrX 29503436 29503778 -147470362 + THE1B LTR MaLR 1 364 0 12060 84 3 2 chrX 29503778 29505357 -147468783 + THE1B-int LTR MaLR 1 1580 0 2179 125 73 14 chrX 29505357 29505701 -147468439 + THE1B LTR MaLR 1 364 0 3107 174 100 23 chrX 29507557 29508288 -147465852 - LTR48 LTR ERV1 0 787 1 1922 119 20 25 chrX 29510619 29511153 -147462987 + MER4A LTR ERV1 1 664 0 706 230 46 65 chrX 29511153 29511370 -147462770 + MLT1F1 LTR MaLR 45 257 -285 1328 103 41 0 chrX 29511371 29511565 -147462575 - MSTA LTR MaLR 0 428 227 2548 188 140 25 chrX 29511571 29512221 -147461919 + MER50 LTR ERV1 10 734 0 1305 157 31 0 chrX 29512221 29512444 -147461696 - MSTA LTR MaLR -198 230 1 1104 203 228 0 chrX 29512444 29512690 -147461450 + MLT1F1 LTR MaLR 266 567 0 2037 189 46 66 chrX 29513008 29513568 -147460572 + MER34B LTR ERV1 17 565 0 253 219 62 0 chrX 29513950 29514014 -147460126 - L2 LINE L2 -1 3312 3245 1618 200 45 97 chrX 29514026 29514602 -147459538 - MER34C LTR ERV1 -3 582 37 504 319 82 65 chrX 29514602 29514969 -147459171 - L2 LINE L2 -73 3199 2827 2206 142 23 3 chrX 29515070 29515422 -147458718 - MLT1A1 LTR MaLR -6 359 1 1219 253 76 83 chrX 29515657 29515984 -147458156 - L1MEc LINE L1 -5837 705 377 2269 113 0 0 chrX 29515984 29516285 -147457855 - AluSx SINE Alu -11 301 1 1219 253 76 83 chrX 29516285 29516652 -147457488 - L1MEc LINE L1 -6165 377 16 4180 92 2 3 chrX 29516691 29517062 -147457078 - L1PB1 LINE L1 -4 6147 5776 336 102 0 0 chrX 29517062 29517111 -147457029 + (CA)n Simple_repeat Simple_repeat 2 50 0 4180 92 2 3 chrX 29517111 29517324 -147456816 - L1PB1 LINE L1 -375 5776 5564 6761 84 39 8 chrX 29517345 29518402 -147455738 - L1PBa LINE L1 -4115 2748 1660 5361 153 64 29 chrX 29518399 29519634 -147454506 - L1PBa LINE L1 -5438 1425 3 * 189 107 0 0 chrX 29519839 29519867 -147454273 + (TA)n Simple_repeat Simple_repeat 2 29 0 26 30 0 0 chrX 29520016 29520049 -147454091 + AT_rich Low_complexity Low_complexity 1 33 0 1362 109 28 0 chrX 29520264 29520475 -147453665 + L1PA13 LINE L1 5942 6158 -5 246 128 0 0 chrX 29520727 29520766 -147453374 + (TCCCC)n Simple_repeat Simple_repeat 2 40 0 1564 183 33 7 chrX 29520779 29521052 -147453088 - AluJo SINE Alu -32 280 1 2225 92 3 41 chrX 29521106 29521422 -147452718 - AluSc SINE Alu -5 304 1 267 289 113 0 chrX 29521771 29521868 -147452272 + MIR SINE MIR 52 159 -103 345 347 31 0 chrX 29521994 29522092 -147452048 + MER91A DNA MER1_type 95 195 -1 673 313 113 27 chrX 29522483 29522895 -147451245 + LTR16A LTR ERVL 1 445 -5 2243 90 0 0 chrX 29522929 29523240 -147450900 + AluSc SINE Alu 1 311 0 513 259 29 35 chrX 29523264 29523438 -147450702 + MLT1J LTR MaLR 8 180 -331 377 269 48 14 chrX 29523821 29523966 -147450174 + MIR SINE MIR 86 235 -27 1410 298 17 5 chrX 29524209 29524625 -147449515 - LTR16A LTR ERVL -2 448 28 209 122 49 0 chrX 29525443 29525484 -147448656 + (TATG)n Simple_repeat Simple_repeat 3 45 0 211 368 103 17 chrX 29525489 29525606 -147448534 - MIR3 SINE MIR -67 141 15 534 238 11 43 chrX 29525899 29526084 -147448056 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 624 247 100 0 chrX 29526456 29526606 -147447534 + MER58C DNA MER1_type 1 165 -50 1495 251 17 47 chrX 29526703 29527169 -147446971 - LTR16A1 LTR ERVL -2 455 4 535 159 63 32 chrX 29527713 29527839 -147446301 - L1MC3 LINE L1 0 7785 7656 2605 188 33 9 chrX 29527843 29528392 -147445748 - L1MC3 LINE L1 -1167 6618 6057 420 208 21 10 chrX 29528393 29528489 -147445651 + L1MC2 LINE L1 5928 6024 -320 3574 248 43 35 chrX 29528489 29529929 -147444211 - L1MCb LINE L1 -2500 4064 2638 2084 134 16 3 chrX 29529929 29530235 -147443905 - AluSx SINE Alu -2 310 1 3574 248 43 35 chrX 29530235 29532621 -147441519 - L1MCb LINE L1 -3926 2638 61 2414 75 0 3 chrX 29532621 29532914 -147441226 - AluSg SINE Alu -18 292 1 3574 248 43 35 chrX 29532914 29532976 -147441164 - L1MCb LINE L1 -6503 61 1 231 277 108 78 chrX 29533535 29533633 -147440507 - MLT1L LTR MaLR -80 535 429 2386 87 0 16 chrX 29533633 29533943 -147440197 + AluSx SINE Alu 1 305 -7 231 277 108 78 chrX 29533943 29534010 -147440130 - MLT1L LTR MaLR -186 429 365 430 345 15 13 chrX 29534452 29534794 -147439346 - LTR16B LTR ERVL 0 464 51 896 307 70 34 chrX 29534989 29535490 -147438650 + LTR33 LTR ERVL 3 521 0 386 323 93 71 chrX 29535648 29535958 -147438182 - L2 LINE L2 0 3272 2956 247 350 76 59 chrX 29536029 29536266 -147437874 - L2 LINE L2 -520 2794 2554 25 0 0 0 chrX 29537127 29537152 -147436988 + AT_rich Low_complexity Low_complexity 1 25 0 428 289 58 35 chrX 29537162 29537508 -147436632 + L1ME LINE L1 5378 5731 -390 183 80 0 0 chrX 29537607 29537632 -147436508 + (TA)n Simple_repeat Simple_repeat 1 25 0 236 268 14 14 chrX 29537860 29537931 -147436209 - LTR33 LTR ERVL -306 215 145 830 290 105 29 chrX 29538264 29539015 -147435125 - ERVL LTR ERVL -387 5377 4511 387 0 0 0 chrX 29539015 29539058 -147435082 + (TA)n Simple_repeat Simple_repeat 1 43 0 830 290 105 29 chrX 29539058 29539127 -147435013 - ERVL LTR ERVL -1253 4511 4449 298 319 17 0 chrX 29539168 29539284 -147434856 - ERVL LTR ERVL -756 5008 4891 6435 158 34 33 chrX 29539420 29540803 -147433337 - L1MC3 LINE L1 0 7785 6402 1318 193 81 62 chrX 29540803 29541161 -147432979 + MLT1A1 LTR MaLR 1 365 0 7489 211 36 38 chrX 29541205 29542921 -147431219 + MLT1A1-int LTR MaLR 23 1735 0 1527 188 73 48 chrX 29542921 29543277 -147430863 + MLT1A1 LTR MaLR 1 365 0 1972 191 68 11 chrX 29543281 29543753 -147430387 - L1MC3 LINE L1 -1383 6402 5904 1891 244 42 36 chrX 29543755 29544284 -147429856 + MLT2B3 LTR ERVL 3 534 -20 198 103 0 0 chrX 29544284 29544313 -147429827 + (TCTCCC)n Simple_repeat Simple_repeat 5 33 0 246 111 0 0 chrX 29544329 29544365 -147429775 + MLT2C2 LTR ERVL 429 464 0 7827 196 30 13 chrX 29544365 29545580 -147428560 + ERVL-C2 LTR ERVL 1 1193 -4571 2158 106 0 20 chrX 29545580 29545873 -147428267 + AluSp SINE Alu 1 287 -26 387 0 0 0 chrX 29545873 29545916 -147428224 + (CA)n Simple_repeat Simple_repeat 2 44 0 7827 196 30 13 chrX 29545916 29546257 -147427883 + ERVL-C2 LTR ERVL 1192 1585 -4179 1497 263 40 23 chrX 29546257 29546351 -147427789 - L2 LINE L2 -1009 2305 2214 1919 188 121 38 chrX 29546351 29546393 -147427747 - MLT2B1 LTR ERVL 0 520 483 351 0 0 0 chrX 29546393 29546432 -147427708 + (CA)n Simple_repeat Simple_repeat 2 40 0 1919 188 121 38 chrX 29546432 29546869 -147427271 - MLT2B1 LTR ERVL -37 483 1 1497 263 40 23 chrX 29546869 29547204 -147426936 - L2 LINE L2 -1100 2214 1869 231 250 18 18 chrX 29547358 29547414 -147426726 + MIR SINE MIR 95 150 -58 2541 157 14 4 chrX 29547977 29548462 -147425678 + L1MA2 LINE L1 3944 4433 -1713 * 6703 96 5 29 chrX 29548459 29548560 -147425580 + L1MA2 LINE L1 5231 5333 -971 2189 126 10 0 chrX 29548560 29548870 -147425270 + AluSq SINE Alu 1 313 0 6703 96 5 29 chrX 29548870 29549866 -147424274 + L1MA2 LINE L1 5333 6304 0 200 125 0 25 chrX 29549869 29549909 -147424231 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 40 59 0 0 chrX 29550380 29550448 -147423692 + AT_rich Low_complexity Low_complexity 1 68 0 1713 214 32 21 chrX 29551014 29551392 -147422748 - MLT1E LTR MaLR -2 591 210 561 225 10 50 chrX 29551432 29551632 -147422508 - HAL1 LINE L1 -1349 1158 967 423 38 0 0 chrX 29551683 29551736 -147422404 + (TG)n Simple_repeat Simple_repeat 2 54 0 1026 233 127 1 chrX 29551737 29552173 -147421967 - MLT2F LTR ERVL -126 537 1 2278 91 0 10 chrX 29552186 29552484 -147421656 - AluY SINE Alu -15 296 2 4819 174 46 15 chrX 29552581 29552935 -147421205 + MER49 LTR ERV1 5 346 -577 2182 124 0 3 chrX 29552935 29553233 -147420907 - AluSx SINE Alu -15 297 1 4819 174 46 15 chrX 29553233 29553769 -147420371 + MER49 LTR ERV1 346 923 0 261 237 55 190 chrX 29553899 29554023 -147420117 + L2 LINE L2 7 76 -3238 4241 93 22 0 chrX 29554023 29554617 -147419523 + L1PA14 LINE L1 5542 6148 -13 261 237 55 190 chrX 29554617 29554766 -147419374 + L2 LINE L2 76 243 -3071 * 681 287 35 13 chrX 29554735 29554965 -147419175 + L2 LINE L2 3074 3308 -5 2203 117 0 0 chrX 29555186 29555484 -147418656 - AluSp SINE Alu -15 298 1 325 298 0 53 chrX 29555905 29556056 -147418084 + MLT1J2 LTR MaLR 1 143 -307 261 202 60 83 chrX 29556084 29556226 -147417914 + MLT1J2 LTR MaLR 225 422 -28 955 319 98 0 chrX 29556978 29557386 -147416754 + LTR16A LTR ERVL 1 448 -2 195 42 0 0 chrX 29558358 29558382 -147415758 + (GA)n Simple_repeat Simple_repeat 1 24 0 2016 219 118 10 chrX 29558778 29559286 -147414854 + MLT1F1 LTR MaLR 5 567 0 2421 85 0 0 chrX 29559495 29559802 -147414338 - AluSx SINE Alu -5 307 1 313 362 31 52 chrX 29560371 29560506 -147413634 + MIR SINE MIR 18 148 -64 2441 101 0 0 chrX 29561067 29561373 -147412767 - AluSx SINE Alu -6 306 1 373 236 102 47 chrX 29561426 29561553 -147412587 - MER5A DNA MER1_type 0 189 56 296 343 34 63 chrX 29561428 29561603 -147412537 + MER5A DNA MER1_type 17 186 -3 * 1058 310 109 25 chrX 29561706 29562467 -147411673 + L2 LINE L2 2429 3255 -58 966 176 10 5 chrX 29563533 29563737 -147410403 - L1MD3 LINE L1 -6 7989 7785 2259 100 3 0 chrX 29563801 29564090 -147410050 + AluSq SINE Alu 1 290 -23 363 23 0 0 chrX 29564120 29564164 -147409976 + (CA)n Simple_repeat Simple_repeat 1 44 0 2704 26 0 3 chrX 29564613 29564924 -147409216 - AluY SINE Alu -1 310 1 2223 91 0 0 chrX 29565006 29565314 -147408826 + AluSx SINE Alu 1 308 0 191 286 79 0 chrX 29565862 29565925 -147408215 - MIR SINE MIR -137 125 58 898 165 81 17 chrX 29566603 29566839 -147407301 + LTR65 LTR ERV1 3 253 -416 22 0 0 0 chrX 29566958 29566980 -147407160 + AT_rich Low_complexity Low_complexity 1 22 0 2138 8 0 0 chrX 29566981 29567233 -147406907 - L1HS LINE L1 0 6155 5904 * 5305 17 0 0 chrX 29567219 29567863 -147406277 + L1HS LINE L1 5263 5906 -249 1383 207 118 11 chrX 29567863 29568245 -147405895 + LTR65 LTR ERV1 245 667 -2 2343 94 0 3 chrX 29568434 29568732 -147405408 + AluSx SINE Alu 1 297 -15 3222 161 54 5 chrX 29570314 29570890 -147403250 + MER6A DNA MER2_type 1 604 -1 2399 165 115 6 chrX 29571353 29571892 -147402248 + L1MB7 LINE L1 5566 6163 -21 411 229 41 24 chrX 29571902 29572072 -147402068 - Charlie4 DNA MER1_type -528 1433 1261 2424 84 0 0 chrX 29572602 29572899 -147401241 + AluSx SINE Alu 1 297 -15 856 208 67 28 chrX 29573047 29573331 -147400809 - Charlie4 DNA MER1_type -1665 296 2 562 200 37 0 chrX 29573512 29573647 -147400493 - L1MD2 LINE L1 -22 6337 6198 441 225 0 0 chrX 29575413 29575493 -147398647 + FRAM/FAM SINE Alu 1 79 -97 2323 103 0 3 chrX 29575661 29575962 -147398178 + AluSx SINE Alu 2 301 -11 754 287 147 14 chrX 29576567 29577009 -147397131 + LTR33A LTR ERVL 23 523 0 1636 210 63 18 chrX 29577431 29577874 -147396266 + MLT1C LTR MaLR 1 463 -4 3024 230 100 15 chrX 29577919 29579100 -147395040 - L1M4 LINE L1 -2466 3680 2400 10955 25 0 2 chrX 29579667 29581648 -147392492 + L1PA4 LINE L1 4177 6155 0 2495 93 0 0 chrX 29582922 29583234 -147390906 + AluSx SINE Alu 1 312 0 1224 124 0 0 chrX 29583456 29583625 -147390515 - AluSg/x SINE Alu -10 302 134 2284 91 0 10 chrX 29583625 29583933 -147390207 - AluY SINE Alu -6 305 1 404 340 95 66 chrX 29585126 29585623 -147388517 + HAL1 LINE L1 108 618 -1889 507 130 98 0 chrX 29585861 29585953 -147388187 - L1MA7 LINE L1 0 6291 6191 249 282 64 39 chrX 29586297 29586375 -147387765 + L2 LINE L2 3170 3249 -23 3387 136 53 5 chrX 29586503 29587086 -147387054 - L1MA4 LINE L1 -23 6277 5667 288 152 106 0 chrX 29587063 29587129 -147387011 - L1MA7 LINE L1 -62 6229 6157 * 4584 145 27 24 chrX 29587133 29588120 -147386020 - L1MA7 LINE L1 -221 6070 5086 23 0 0 0 chrX 29588120 29588143 -147385997 + AT_rich Low_complexity Low_complexity 1 23 0 264 264 128 14 chrX 29589801 29589949 -147384191 + HAL1 LINE L1 2020 2184 -323 2377 92 0 0 chrX 29591670 29591973 -147382167 + AluSg SINE Alu 1 303 -7 466 302 154 0 chrX 29592254 29592403 -147381737 + MER5A DNA MER1_type 12 183 -6 2068 196 42 27 chrX 29592903 29593311 -147380829 - MLT2D LTR ERVL 0 414 1 1676 161 71 107 chrX 29594055 29594369 -147379771 - MSTD LTR MaLR 0 396 99 2223 106 0 3 chrX 29594369 29594661 -147379479 - AluSp SINE Alu -22 291 1 1676 161 71 107 chrX 29594661 29594757 -147379383 - MSTD LTR MaLR -297 99 1 1708 60 18 9 chrX 29594895 29595113 -147379027 + L1PA12 LINE L1 5949 6168 0 660 264 163 50 chrX 29595523 29595988 -147378152 - LTR33 LTR ERVL 0 521 4 204 40 0 0 chrX 29596657 29596682 -147377458 + (A)n Simple_repeat Simple_repeat 1 25 0 2588 123 15 15 chrX 29596817 29597217 -147376923 - L1MB4 LINE L1 0 6180 5781 22 0 0 0 chrX 29597410 29597432 -147376708 + AT_rich Low_complexity Low_complexity 1 22 0 767 288 56 72 chrX 29597460 29598051 -147376089 - L1ME3 LINE L1 -296 5866 5354 639 320 44 24 chrX 29598513 29598763 -147375377 - MIR SINE MIR -6 256 2 2010 157 0 25 chrX 29600340 29600659 -147373481 - AluJb SINE Alu -1 311 1 2678 164 70 19 chrX 29600867 29601393 -147372747 - LTR49 LTR ERV1 -42 553 1 822 301 154 3 chrX 29602236 29602535 -147371605 + MLT1I LTR MaLR 1 344 -65 463 323 47 43 chrX 29602630 29602909 -147371231 + LTR16B LTR ERVL 40 319 -145 435 275 7 40 chrX 29602951 29603100 -147371040 + LTR16B LTR ERVL 320 463 -1 845 321 56 14 chrX 29604186 29604541 -147369599 - LTR16B LTR ERVL 0 464 95 298 282 137 43 chrX 29604836 29604953 -147369187 + MIR SINE MIR 64 191 -71 304 205 102 84 chrX 29605182 29605348 -147368792 - MLT1K LTR MaLR -57 531 363 1982 117 59 0 chrX 29605722 29605995 -147368145 - AluSx SINE Alu -23 289 1 817 316 122 11 chrX 29606104 29606481 -147367659 - LTR16C LTR ERVL 0 491 73 2682 199 52 15 chrX 29606512 29607054 -147367086 - MLT1F1 LTR MaLR -5 562 1 351 0 0 0 chrX 29607189 29607228 -147366912 + (TTTC)n Simple_repeat Simple_repeat 1 39 0 1332 6 0 33 chrX 29607229 29607412 -147366728 + (TTC)n Simple_repeat Simple_repeat 1 177 0 252 86 0 0 chrX 29607413 29607448 -147366692 + (TTCTCC)n Simple_repeat Simple_repeat 4 38 0 1809 151 26 35 chrX 29607448 29607759 -147366381 - AluSq SINE Alu -1 312 5 447 305 45 11 chrX 29608312 29608489 -147365651 - LTR16C LTR ERVL -32 459 277 8852 112 5 29 chrX 29608631 29609732 -147364408 + HSMAR2 DNA Mariner 9 1073 -229 1888 142 33 0 chrX 29609732 29610007 -147364133 + AluJb SINE Alu 7 290 -22 8852 112 5 29 chrX 29610007 29610232 -147363908 + HSMAR2 DNA Mariner 1073 1302 0 3829 110 54 17 chrX 29610892 29611466 -147362674 + LTR49 LTR ERV1 1 595 0 4097 146 27 17 chrX 29611694 29612398 -147361742 + MER50 LTR ERV1 1 711 -23 2155 144 101 93 chrX 29612572 29613128 -147361012 - LTR49 LTR ERV1 -33 562 3 2241 81 7 7 chrX 29613609 29613904 -147360236 - AluSq SINE Alu -18 295 1 1007 181 62 6 chrX 29614128 29614305 -147359835 + MER5A DNA MER1_type 3 189 0 369 203 13 0 chrX 29614628 29614707 -147359433 - MER5A DNA MER1_type -83 106 27 2992 116 51 28 chrX 29614728 29615387 -147358753 + LTR8A LTR ERV1 1 727 0 403 326 11 17 chrX 29616096 29616274 -147357866 + CT-rich Low_complexity Low_complexity 4 180 0 295 268 150 39 chrX 29618173 29618300 -147355840 + MIR SINE MIR 5 145 -117 326 118 132 29 chrX 29618307 29618375 -147355765 - MER34 LTR ERV1 0 542 468 845 173 70 193 chrX 29618429 29618762 -147355378 - MER34B LTR ERV1 -161 404 140 2357 39 0 21 chrX 29618762 29619044 -147355096 + AluY SINE Alu 2 277 -34 845 173 70 193 chrX 29619044 29619166 -147354974 - MER34B LTR ERV1 -425 140 5 2412 87 0 0 chrX 29619693 29619992 -147354148 + AluSg SINE Alu 1 299 -11 3126 168 22 13 chrX 29620973 29621527 -147352613 - MER89 LTR ERV1 0 559 1 1464 248 58 22 chrX 29621660 29622075 -147352065 + LTR16A LTR ERVL 21 450 0 344 146 0 18 chrX 29622086 29622141 -147351999 + LTR33 LTR ERVL 468 521 0 285 75 0 0 chrX 29622334 29622374 -147351766 + (CA)n Simple_repeat Simple_repeat 2 41 0 1100 231 4 21 chrX 29622818 29623056 -147351084 + MIR SINE MIR 5 238 -24 2297 120 3 0 chrX 29623313 29623621 -147350519 + AluSx SINE Alu 1 309 -3 490 257 60 9 chrX 29623656 29623887 -147350253 + L1ME LINE L1 5241 5482 -680 338 211 26 13 chrX 29624358 29624434 -147349706 + MLT1K LTR MaLR 512 588 0 385 334 77 67 chrX 29624557 29624946 -147349194 - L2 LINE L2 -339 2975 2583 706 274 5 39 chrX 29625698 29625902 -147348238 + LTR16A LTR ERVL 97 293 -157 2595 168 20 58 chrX 29625902 29626443 -147347697 - MLT1D LTR MaLR 0 505 3 784 211 19 6 chrX 29626444 29626605 -147347535 + LTR16A LTR ERVL 288 450 0 1406 226 7 10 chrX 29626899 29627195 -147346945 - LTR16A LTR ERVL 0 450 156 1436 204 35 45 chrX 29627196 29627594 -147346546 - L1ME LINE L1 -578 5588 5195 409 271 7 21 chrX 29628232 29628376 -147345764 - LTR16A1 LTR ERVL -4 453 312 944 259 47 22 chrX 29628574 29628843 -147345297 + LTR16A1 LTR ERVL 168 488 -3 720 180 0 0 chrX 29629472 29629600 -147344540 - MLT1B LTR MaLR 0 390 263 1602 209 67 64 chrX 29629602 29630303 -147343837 + MER49 LTR ERV1 1 901 -22 2303 96 3 3 chrX 29630303 29630606 -147343534 - AluSq SINE Alu -10 303 1 1602 209 67 64 chrX 29630606 29630630 -147343510 + MER49 LTR ERV1 901 923 0 1125 171 38 49 chrX 29630634 29630897 -147343243 - MLT1B LTR MaLR -130 260 1 1720 260 74 42 chrX 29630898 29631645 -147342495 + Charlie2b DNA MER1_type 60 830 -1952 1022 199 117 35 chrX 29631645 29631986 -147342154 + Charlie2a DNA MER1_type 1625 1993 -869 782 215 0 13 chrX 29631987 29632145 -147341995 + FRAM SINE Alu 1 155 -21 397 219 126 0 chrX 29632167 29632286 -147341854 + Charlie2a DNA MER1_type 2004 2137 -725 341 348 27 27 chrX 29634447 29634703 -147339437 + ERVL LTR ERVL 798 1053 -4711 346 188 25 38 chrX 29634875 29634955 -147339185 + Tigger5 DNA MER2_type 1 79 -2244 422 171 13 0 chrX 29634956 29635032 -147339108 - Tigger5 DNA MER2_type -5 2318 2242 314 115 0 19 chrX 29635022 29635074 -147339066 + Tigger5 DNA MER2_type 2242 2292 -31 * 1291 193 107 45 chrX 29635181 29635769 -147338371 - LTR48B LTR ERV1 -3 641 1 435 353 30 30 chrX 29635901 29636053 -147338087 + ERVL LTR ERVL 1302 1456 -3540 2321 103 132 8 chrX 29636053 29636433 -147337707 + MSTA LTR MaLR 1 427 -1 435 353 30 30 chrX 29636433 29636549 -147337591 + ERVL LTR ERVL 1455 1570 -3426 607 284 36 21 chrX 29636566 29636915 -147337225 - LTR16A LTR ERVL -14 436 24 771 319 24 11 chrX 29636943 29637344 -147336796 + ERVL LTR ERVL 1680 2043 -2953 1113 301 34 10 chrX 29637360 29637769 -147336371 + ERVL LTR ERVL 2144 2562 -3202 390 204 239 0 chrX 29637883 29637996 -147336144 - LTR16A LTR ERVL 0 450 311 456 35 0 0 chrX 29638471 29638529 -147335611 + (GA)n Simple_repeat Simple_repeat 1 58 0 308 234 64 11 chrX 29639736 29639830 -147334310 - L1ME LINE L1 -482 5639 5541 1133 243 106 58 chrX 29640018 29640495 -147333645 - L1MC4 LINE L1 -20 8022 7509 976 193 18 55 chrX 29640495 29640713 -147333427 + MER63A DNA MER1_type 1 210 0 1133 243 106 58 chrX 29640713 29640837 -147333303 - L1MC4 LINE L1 -533 7509 7392 402 21 0 0 chrX 29640869 29640916 -147333224 + (TG)n Simple_repeat Simple_repeat 2 48 0 970 292 69 6 chrX 29641339 29641699 -147332441 - LTR16C LTR ERVL 0 491 109 283 285 146 7 chrX 29642592 29642743 -147331397 - LTR16C LTR ERVL -26 465 294 2359 87 7 0 chrX 29643685 29643984 -147330156 - AluSg SINE Alu -9 301 1 192 318 32 0 chrX 29644000 29644063 -147330077 - L2 LINE L2 -2848 466 402 21 0 0 0 chrX 29644535 29644556 -147329584 + AT_rich Low_complexity Low_complexity 1 21 0 26 23 0 23 chrX 29645099 29645124 -147329016 + AT_rich Low_complexity Low_complexity 1 26 -17 1999 128 0 10 chrX 29645124 29645413 -147328727 + AluSc SINE Alu 1 286 -23 26 23 0 23 chrX 29645413 29645431 -147328709 + AT_rich Low_complexity Low_complexity 26 43 0 1030 156 0 17 chrX 29645962 29646135 -147328005 - FRAM SINE Alu -14 162 1 961 320 83 29 chrX 29647282 29647773 -147326367 - LTR33 LTR ERVL 0 521 4 216 133 22 22 chrX 29648106 29648151 -147325989 + CT-rich Low_complexity Low_complexity 1 45 0 225 0 0 0 chrX 29649088 29649113 -147325027 + (TG)n Simple_repeat Simple_repeat 2 26 0 201 337 21 32 chrX 29649448 29649543 -147324597 - MER5A DNA MER1_type -6 183 90 1863 177 98 36 chrX 29649548 29649988 -147324152 - MLT1C LTR MaLR 0 467 1 375 338 75 39 chrX 29650346 29650654 -147323486 + LTR16C LTR ERVL 167 485 -6 235 234 0 0 chrX 29650654 29650701 -147323439 - MER5A DNA MER1_type -136 53 7 2040 151 0 16 chrX 29650868 29651185 -147322955 + AluJo SINE Alu 1 312 0 315 0 0 0 chrX 29651855 29651890 -147322250 + (TG)n Simple_repeat Simple_repeat 2 36 0 440 266 272 0 chrX 29652104 29652288 -147321852 + MIR SINE MIR 28 261 -1 319 208 132 9 chrX 29652507 29652613 -147321527 - HAL1 LINE L1 -1411 1096 978 1240 279 139 37 chrX 29652677 29653387 -147320753 - HAL1 LINE L1 -1639 868 86 387 0 0 0 chrX 29653873 29653916 -147320224 + (TG)n Simple_repeat Simple_repeat 2 44 0 207 191 0 0 chrX 29654202 29654249 -147319891 + A-rich Low_complexity Low_complexity 1 47 0 260 281 110 12 chrX 29654460 29654542 -147319598 + MIR3 SINE MIR 100 189 -19 495 295 126 6 chrX 29655109 29655292 -147318848 + MIR3 SINE MIR 1 205 -3 25 0 0 0 chrX 29655333 29655358 -147318782 + AT_rich Low_complexity Low_complexity 1 25 0 205 284 90 0 chrX 29655457 29655524 -147318616 - MIR SINE MIR -142 120 48 282 262 136 10 chrX 29655605 29655708 -147318432 + MIR SINE MIR 24 139 -69 2212 121 3 7 chrX 29656621 29656926 -147317214 + AluSx SINE Alu 1 304 -8 1235 196 100 102 chrX 29657018 29657488 -147316652 + MLT2B1 LTR ERVL 1 471 -49 631 0 25 0 chrX 29657488 29657567 -147316573 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 1235 196 100 102 chrX 29657567 29657617 -147316523 + MLT2B1 LTR ERVL 471 520 0 2619 158 9 2 chrX 29657680 29658124 -147316016 + MLT1C LTR MaLR 21 467 0 535 267 49 78 chrX 29658288 29658575 -147315565 + L1ME4a LINE L1 5687 5963 -158 2414 108 25 14 chrX 29658575 29658935 -147315205 - THE1B LTR MaLR 0 364 1 535 267 49 78 chrX 29658935 29659086 -147315054 + L1ME4a LINE L1 5963 6117 -4 2976 203 66 37 chrX 29659571 29659821 -147314319 - L1ME1 LINE L1 -5 6230 5989 363 126 0 158 chrX 29659821 29659916 -147314224 + MADE1 DNA Mariner 1 80 0 2976 203 66 37 chrX 29659916 29660774 -147313366 - L1ME1 LINE L1 -246 5989 5086 2182 242 75 35 chrX 29660771 29661477 -147312663 - L1ME1 LINE L1 -1828 4387 3632 * 1945 166 0 3 chrX 29661477 29661773 -147312367 + AluJo SINE Alu 1 295 -17 2182 242 75 35 chrX 29661773 29662009 -147312131 - L1ME1 LINE L1 -2583 3632 3407 2050 255 16 18 chrX 29662011 29662579 -147311561 + MLT1F1 LTR MaLR 1 567 0 271 277 29 15 chrX 29662580 29662717 -147311423 + MLT1F1-int LTR MaLR 2 140 -1231 523 160 11 0 chrX 29662718 29662812 -147311328 + MLT1F1 LTR MaLR 469 563 -4 21 0 0 0 chrX 29662815 29662836 -147311304 + AT_rich Low_complexity Low_complexity 1 21 0 17396 190 32 15 chrX 29662840 29664332 -147309808 - L1PA15 LINE L1 -9 6807 5341 2492 84 0 0 chrX 29664332 29664640 -147309500 + AluY SINE Alu 1 308 -3 17396 190 32 15 chrX 29664640 29665288 -147308852 - L1PA15 LINE L1 -1475 5341 4705 2383 97 7 3 chrX 29665288 29665598 -147308542 - AluSq SINE Alu 0 313 3 17396 190 32 15 chrX 29665598 29670074 -147304066 - L1PA15 LINE L1 -2111 4705 1 5109 223 102 71 chrX 29670098 29672297 -147301843 - L1ME1 LINE L1 -2804 3411 959 685 200 0 8 chrX 29672297 29672422 -147301718 - FLAM_C SINE Alu -19 124 1 5109 223 102 71 chrX 29672422 29673376 -147300764 - L1ME1 LINE L1 -5256 959 35 917 234 24 0 chrX 29675005 29675210 -147298930 + MIR SINE MIR 4 213 -49 379 347 40 0 chrX 29675661 29675834 -147298306 - MIR SINE MIR 0 262 83 445 236 9 45 chrX 29676383 29676493 -147297647 + MIR SINE MIR 2 107 -155 * 718 150 0 0 chrX 29676489 29676602 -147297538 - MIR SINE MIR -66 196 84 407 277 40 89 chrX 29676663 29676887 -147297253 - L1MC4 LINE L1 -1 8041 7829 719 202 62 70 chrX 29676930 29677202 -147296938 - L1ME2 LINE L1 -20 6144 5875 2328 81 37 0 chrX 29677333 29677451 -147296689 + AluSc SINE Alu 1 113 -196 207 0 0 0 chrX 29677451 29677474 -147296666 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2328 81 37 0 chrX 29677474 29677653 -147296487 + AluSc SINE Alu 113 309 0 337 158 24 0 chrX 29677741 29677823 -147296317 + (TA)n Simple_repeat Simple_repeat 2 85 0 261 224 151 83 chrX 29679029 29679133 -147295007 - MER5A DNA MER1_type -4 185 62 968 120 6 12 chrX 29679133 29679300 -147294840 - L1MA4A LINE L1 -2 6301 6136 261 224 151 83 chrX 29679300 29679364 -147294776 - MER5A DNA MER1_type -127 62 4 260 168 126 59 chrX 29679873 29679992 -147294148 - L1MC4 LINE L1 -821 7221 7095 1105 256 92 53 chrX 29680042 29680106 -147294034 - L1MC4 LINE L1 -818 7075 7015 2504 66 3 0 chrX 29680106 29680408 -147293732 - AluSp SINE Alu -10 303 1 1105 256 92 53 chrX 29680408 29681353 -147292787 - L1MC4 LINE L1 -878 7015 5916 450 295 8 8 chrX 29681495 29681624 -147292516 + L2 LINE L2 3184 3312 -1 413 276 17 77 chrX 29681816 29681997 -147292143 + MER5A DNA MER1_type 2 171 -18 224 306 14 14 chrX 29682004 29682076 -147292064 + L3 LINE CR1 1399 1470 -107 202 200 55 18 chrX 29682145 29682200 -147291940 + L2 LINE L2 3216 3272 0 2515 76 10 90 chrX 29683231 29683641 -147290499 + MER51B LTR ERV1 1 377 0 1168 238 77 24 chrX 29683641 29683977 -147290163 + MLT1C LTR MaLR 66 419 -48 706 310 130 23 chrX 29684028 29684172 -147289968 - L1M4 LINE L1 -1567 4579 4452 1574 173 0 76 chrX 29684172 29684502 -147289638 - AluJo SINE Alu -7 305 1 706 310 130 23 chrX 29684502 29685420 -147288720 - L1M4 LINE L1 -1694 4452 3403 2559 138 50 5 chrX 29685496 29685937 -147288203 - MER65C LTR ERV1 0 461 1 279 283 85 28 chrX 29686342 29686448 -147287692 + MLT1I LTR MaLR 98 209 -200 1060 141 89 42 chrX 29686514 29686727 -147287413 - MER58A DNA MER1_type 0 224 2 4400 104 55 3 chrX 29738027 29738717 -147235423 + Tigger3(Golem) DNA MER2_type 2291 3016 -13 391 270 95 30 chrX 29738953 29739153 -147234987 + L2 LINE L2 3100 3312 -1 264 308 0 0 chrX 29740659 29740724 -147233416 + MIR3 SINE MIR 135 199 -9 213 383 83 11 chrX 29740722 29740902 -147233238 + L2 LINE L2 2832 3024 -248 * 191 237 220 25 chrX 29741378 29741496 -147232644 - L2 LINE L2 -9 3304 3164 201 356 58 29 chrX 29741625 29741799 -147232341 - L2 LINE L2 -338 2976 2798 5029 212 39 51 chrX 29742010 29743438 -147230702 - L1MD2 LINE L1 -1 6358 4978 180 0 0 0 chrX 29743438 29743458 -147230682 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5029 212 39 51 chrX 29743458 29744713 -147229427 - L1MD2 LINE L1 -1381 4978 3708 233 355 18 9 chrX 29745588 29745698 -147228442 - MIR SINE MIR -65 143 33 183 288 175 12 chrX 29746354 29746434 -147227706 + L2 LINE L2 3176 3268 -4 553 283 28 23 chrX 29746610 29746787 -147227353 + MIR SINE MIR 74 251 -11 229 280 60 0 chrX 29746826 29746876 -147227264 - L2 LINE L2 -18 3254 3202 478 248 41 0 chrX 29746876 29746997 -147227143 - MER119 DNA MER1_type -3 580 455 486 262 0 10 chrX 29747012 29747115 -147227025 - MER119 DNA MER1_type -481 102 1 1009 290 34 53 chrX 29747483 29747956 -147226184 + LTR16B LTR ERVL 1 464 0 2025 317 81 10 chrX 29748496 29749295 -147224845 + L2 LINE L2 1193 2048 -1266 569 259 29 29 chrX 29749357 29749527 -147224613 + L2 LINE L2 3140 3309 -4 313 233 35 35 chrX 29750118 29750204 -147223936 + MIR SINE MIR 172 257 -5 943 206 0 6 chrX 29750927 29751092 -147223048 - FAM SINE Alu -11 164 1 923 216 6 0 chrX 29751174 29751341 -147222799 + MER5A DNA MER1_type 4 171 -18 359 270 10 20 chrX 29751614 29751714 -147222426 - LTR16A LTR ERVL -9 441 343 243 306 28 89 chrX 29751732 29751912 -147222228 - LTR16A LTR ERVL -281 169 1 671 153 6 34 chrX 29752651 29752827 -147221313 + CT-rich Low_complexity Low_complexity 2 172 0 27 29 0 0 chrX 29752941 29752975 -147221165 + AT_rich Low_complexity Low_complexity 1 34 0 453 318 80 29 chrX 29753001 29753439 -147220701 + HAL1 LINE L1 17 512 -1995 948 56 6 37 chrX 29753557 29753719 -147220421 + (GAAA)n Simple_repeat Simple_repeat 2 158 0 591 224 109 102 chrX 29753724 29753910 -147220230 + HAL1 LINE L1 2044 2227 -280 3014 125 41 30 chrX 29753910 29754370 -147219770 + MER34B LTR ERV1 1 470 -95 1898 173 0 0 chrX 29754370 29754676 -147219464 - AluJb SINE Alu -6 306 1 3014 125 41 30 chrX 29754676 29754774 -147219366 + MER34B LTR ERV1 470 565 0 591 224 109 102 chrX 29754774 29755028 -147219112 + HAL1 LINE L1 2227 2487 -20 2699 93 5 11 chrX 29756009 29756386 -147217754 + THE1C LTR MaLR 1 375 0 197 268 18 18 chrX 29757039 29757095 -147217045 + MIR SINE MIR 20 75 -187 328 247 58 45 chrX 29757298 29757452 -147216688 + MIR SINE MIR 107 262 0 194 234 78 78 chrX 29758274 29758351 -147215789 - L2 LINE L2 -1 3312 3236 631 242 91 35 chrX 29759152 29759292 -147214848 - LTR16C LTR ERVL 0 491 360 1416 209 62 36 chrX 29759292 29759633 -147214507 + MLT2C1 LTR ERVL 1 332 -65 1164 34 34 0 chrX 29759633 29759842 -147214298 + (TCTA)n Simple_repeat Simple_repeat 1 216 0 216 0 0 0 chrX 29759844 29759868 -147214272 + (TCCA)n Simple_repeat Simple_repeat 3 26 0 1416 209 62 36 chrX 29759868 29759908 -147214232 + MLT2C1 LTR ERVL 332 397 0 631 242 91 35 chrX 29759908 29759965 -147214175 - LTR16C LTR ERVL -131 360 283 225 267 0 0 chrX 29759970 29760015 -147214125 - LTR16C LTR ERVL -295 196 152 1902 150 4 0 chrX 29760218 29760498 -147213642 + AluSx SINE Alu 3 283 -29 620 271 157 0 chrX 29760881 29761091 -147213049 + MIR SINE MIR 18 260 -2 597 309 28 60 chrX 29761534 29761697 -147212443 + MIR SINE MIR 20 174 -88 765 243 114 5 chrX 29761697 29761899 -147212241 + MER58A DNA MER1_type 1 224 0 597 309 28 60 chrX 29761899 29761984 -147212156 + MIR SINE MIR 174 260 -2 506 256 40 0 chrX 29763041 29763166 -147210974 - MIR3 SINE MIR -23 185 56 971 213 10 0 chrX 29763266 29763463 -147210677 - MER115 DNA AcHobo -1 692 494 711 67 0 0 chrX 29764428 29764557 -147209583 + AluY SINE Alu 196 324 0 546 57 0 0 chrX 29765238 29765308 -147208832 + (TG)n Simple_repeat Simple_repeat 2 71 0 494 289 106 34 chrX 29766102 29766686 -147207454 + HAL1 LINE L1 1093 1718 -789 284 377 42 45 chrX 29766782 29766922 -147207218 + L2 LINE L2 2545 2684 -630 2478 73 0 9 chrX 29766922 29767238 -147206902 - AluSp SINE Alu 0 313 1 284 377 42 45 chrX 29767238 29767431 -147206709 + L2 LINE L2 2684 2877 -437 2364 235 38 26 chrX 29767934 29768518 -147205622 - MLT1E LTR MaLR 0 593 3 246 293 49 0 chrX 29769232 29769324 -147204816 - MIR SINE MIR -62 146 45 705 214 61 86 chrX 29769707 29770034 -147204106 + L1MC4 LINE L1 7723 8041 -1 379 277 9 18 chrX 29770041 29770153 -147203987 - MIR SINE MIR -86 176 66 2213 78 0 3 chrX 29770806 29771113 -147203027 + AluY SINE Alu 1 306 0 378 0 0 0 chrX 29773091 29773133 -147201007 + (TA)n Simple_repeat Simple_repeat 1 42 0 369 0 0 0 chrX 29773132 29773173 -147200967 + (GA)n Simple_repeat Simple_repeat 2 42 0 * 216 182 23 0 chrX 29774028 29774072 -147200068 - L2 LINE L2 -1 3312 3268 269 285 52 81 chrX 29774966 29775252 -147198888 - LTR16A1 LTR ERVL 0 457 159 665 306 112 32 chrX 29776807 29778365 -147195775 - L1 LINE L1 -2325 3821 2147 248 288 96 22 chrX 29778579 29778808 -147195332 - L1M4 LINE L1 -2895 3251 3006 212 234 78 13 chrX 29779296 29779373 -147194767 + L2 LINE L2 2271 2352 -962 1478 213 12 82 chrX 29780008 29780408 -147193732 - MLT1A2 LTR MaLR -2 372 1 2171 282 18 12 chrX 29780932 29781605 -147192535 + L1ME3A LINE L1 35 711 -5685 * 2597 236 39 17 chrX 29781588 29782401 -147191739 + L1ME3A LINE L1 2725 3555 -2660 247 148 0 0 chrX 29782403 29782457 -147191683 + L1MD3 LINE L1 7942 7995 0 844 280 38 40 chrX 29782946 29783368 -147190772 + L1ME3A LINE L1 5542 5962 -277 207 0 0 0 chrX 29783569 29783592 -147190548 + (T)n Simple_repeat Simple_repeat 1 23 0 429 20 0 0 chrX 29784109 29784159 -147189981 + (TG)n Simple_repeat Simple_repeat 2 51 0 200 333 86 0 chrX 29784975 29785068 -147189072 - MIR3 SINE MIR -97 111 11 521 255 101 29 chrX 29785916 29786124 -147188016 - MIR SINE MIR -4 258 36 3080 78 49 5 chrX 29786397 29786785 -147187355 + MLT2A1 LTR ERVL 1 411 -33 258 32 0 0 chrX 29786785 29786816 -147187324 + (CA)n Simple_repeat Simple_repeat 1 31 0 3080 78 49 5 chrX 29786816 29786852 -147187288 + MLT2A1 LTR ERVL 411 444 0 4124 139 108 123 chrX 29787139 29787188 -147186952 + L1MC3 LINE L1 6711 6759 -1026 2225 125 0 0 chrX 29787188 29787500 -147186640 + AluSx SINE Alu 1 312 0 4124 139 108 123 chrX 29787500 29787851 -147186289 + L1MC3 LINE L1 6759 7114 -671 402 265 20 0 chrX 29787851 29787949 -147186191 + MLT1F1 LTR MaLR 35 134 -433 4124 139 108 123 chrX 29787949 29788531 -147185609 + L1MC3 LINE L1 7114 7775 -10 462 261 8 15 chrX 29789529 29789663 -147184477 - MER94 DNA DNA 0 134 2 308 279 13 0 chrX 29791213 29791292 -147182848 + MIR3 SINE MIR 104 183 -25 297 0 0 0 chrX 29792696 29792729 -147181411 + (CA)n Simple_repeat Simple_repeat 2 34 0 284 246 14 0 chrX 29793253 29793322 -147180818 - LTR16A LTR ERVL 0 450 381 644 238 85 40 chrX 29793323 29793546 -147180594 - LTR16A LTR ERVL -189 261 29 319 297 73 18 chrX 29793608 29793773 -147180367 - HAL1b LINE L1 -865 483 310 223 234 0 0 chrX 29794661 29794708 -147179432 + (TG)n Simple_repeat Simple_repeat 2 48 0 844 279 92 49 chrX 29795120 29795611 -147178529 + LTR33A LTR ERVL 1 512 -11 2313 245 37 37 chrX 29796131 29796771 -147177369 - MER77 LTR ERV1 -3 602 54 225 188 0 0 chrX 29797416 29797464 -147176676 + (TA)n Simple_repeat Simple_repeat 2 49 0 264 154 0 0 chrX 29797816 29797868 -147176272 + (CA)n Simple_repeat Simple_repeat 2 53 0 843 275 97 37 chrX 29798308 29798712 -147175428 - MLT1J2 LTR MaLR -2 448 21 992 270 124 39 chrX 29799529 29800043 -147174097 + MLT1F1 LTR MaLR 2 559 -8 318 321 65 24 chrX 29800466 29800634 -147173506 + MIR SINE MIR 78 252 -10 363 251 139 12 chrX 29800778 29800943 -147173197 + MIR SINE MIR 18 202 -60 2369 99 0 10 chrX 29801077 29801390 -147172750 + AluSx SINE Alu 1 310 -2 30 45 0 0 chrX 29802855 29802899 -147171241 + AT_rich Low_complexity Low_complexity 1 44 0 1026 289 89 42 chrX 29803130 29803722 -147170418 - L1ME3A LINE L1 -217 5936 5317 1495 273 75 20 chrX 29803727 29804141 -147169999 + LTR48B LTR ERV1 107 556 -88 1838 122 0 0 chrX 29804141 29804396 -147169744 + AluSg SINE Alu 37 291 -19 1495 273 75 20 chrX 29804396 29804491 -147169649 + LTR48B LTR ERV1 556 644 0 330 297 73 29 chrX 29804496 29804769 -147169371 - L1ME3A LINE L1 -3139 2990 2706 596 311 80 46 chrX 29804913 29805155 -147168985 - L1MEd LINE L1 -5070 1059 827 2213 101 0 13 chrX 29805155 29805453 -147168687 + AluSq SINE Alu 1 294 -19 596 311 80 46 chrX 29805453 29805679 -147168461 - L1MEd LINE L1 -5302 827 592 1418 102 0 5 chrX 29805686 29805872 -147168268 - AluSx SINE Alu -125 187 3 2402 198 0 4 chrX 29805872 29806346 -147167794 + L1PB4 LINE L1 5684 6155 -1 903 309 108 15 chrX 29806396 29806926 -147167214 - L1ME3 LINE L1 -255 5907 5329 32 26 0 0 chrX 29807010 29807049 -147167091 + AT_rich Low_complexity Low_complexity 1 39 0 611 278 0 0 chrX 29807354 29807516 -147166624 - HAL1 LINE L1 -870 1637 1476 707 248 21 16 chrX 29807565 29807807 -147166333 - HAL1 LINE L1 -1133 1374 1132 1426 141 25 0 chrX 29807895 29808137 -147166003 - L1MA6 LINE L1 -1288 4858 4611 2853 144 47 34 chrX 29808138 29809421 -147164719 + L1MA6 LINE L1 4869 6251 -49 1694 169 3 36 chrX 29809421 29809729 -147164411 + AluJo SINE Alu 1 298 -14 2853 144 47 34 chrX 29809729 29809780 -147164360 + L1MA6 LINE L1 6251 6300 0 199 254 48 16 chrX 29809880 29809943 -147164197 - MIR SINE MIR -98 164 100 182 204 41 0 chrX 29810134 29810183 -147163957 + MIR3 SINE MIR 156 206 -2 25 51 0 0 chrX 29810530 29810569 -147163571 + AT_rich Low_complexity Low_complexity 1 39 0 1864 151 17 86 chrX 29810699 29811116 -147163024 - MLT1B LTR MaLR -2 388 1 743 277 21 51 chrX 29811175 29811309 -147162831 - L1ME3A LINE L1 -213 5957 5821 1460 102 0 0 chrX 29811309 29811525 -147162615 - L1MA5A LINE L1 -4 6293 6078 743 277 21 51 chrX 29811525 29811765 -147162375 - L1ME3A LINE L1 -349 5821 5594 920 267 133 18 chrX 29811813 29812266 -147161874 + MLT1J LTR MaLR 3 507 -4 1436 129 21 135 chrX 29812383 29812723 -147161417 - AluYb8 SINE Alu -17 301 1 1059 298 37 32 chrX 29813204 29813509 -147160631 - MLT1J2 LTR MaLR -37 413 104 947 308 28 36 chrX 29813509 29813977 -147160163 + LTR16B LTR ERVL 1 464 0 1059 298 37 32 chrX 29813977 29814080 -147160060 - MLT1J2 LTR MaLR -346 104 3 334 250 4 25 chrX 29814085 29814245 -147159895 - L1ME LINE L1 -333 5829 5683 * 711 180 0 19 chrX 29814240 29814401 -147159739 + L1 LINE L1 4226 4383 -1763 21459 174 18 10 chrX 29814405 29816922 -147157218 + L1MA2 LINE L1 20 2515 -5050 2380 100 3 0 chrX 29816922 29817232 -147156908 + AluSp SINE Alu 1 311 -2 21459 174 18 10 chrX 29817232 29820701 -147153439 + L1MA2 LINE L1 2515 6056 -1509 5363 100 5 0 chrX 29820698 29821461 -147152679 + L1PA13 LINE L1 5397 6163 0 * 7083 124 41 9 chrX 29821450 29823077 -147151063 + L1MA2 LINE L1 6042 7720 -3 1341 179 13 80 chrX 29823108 29823482 -147150658 + L1 LINE L1 4377 4725 -1421 * 5436 157 12 7 chrX 29823480 29824721 -147149419 + L1PA16 LINE L1 4901 6145 -21 575 307 18 35 chrX 29824728 29824977 -147149163 - L1MC/D LINE L1 -496 5674 5439 245 321 27 9 chrX 29825396 29825508 -147148632 + (CATATA)n Simple_repeat Simple_repeat 4 117 0 219 204 0 0 chrX 29825510 29825559 -147148581 + (TG)n Simple_repeat Simple_repeat 2 50 0 275 244 0 67 chrX 29826526 29826616 -147147524 - L2 LINE L2 -1 3271 3188 1493 187 30 50 chrX 29827710 29827760 -147146380 - MLT1A2 LTR MaLR -17 357 308 2287 107 0 22 chrX 29827760 29828077 -147146063 - AluSx SINE Alu -2 310 1 1493 187 30 50 chrX 29828077 29828390 -147145750 - MLT1A2 LTR MaLR -66 308 1 721 307 8 12 chrX 29828644 29828898 -147145242 + MER90 LTR ERV1 1 253 -361 671 222 0 7 chrX 29828895 29829039 -147145101 + MER90 LTR ERV1 362 504 -110 * 2336 161 60 2 chrX 29830032 29830435 -147143705 + MSTB LTR MaLR 1 426 0 8941 165 47 4 chrX 29830435 29832018 -147142122 + MSTB-int LTR MaLR 1 1651 0 2420 165 54 2 chrX 29832018 29832423 -147141717 + MSTB LTR MaLR 1 426 0 773 239 103 4 chrX 29832454 29832688 -147141452 + MIR SINE MIR 3 259 -3 29 0 0 0 chrX 29832809 29832838 -147141302 + AT_rich Low_complexity Low_complexity 1 29 0 3863 158 59 1 chrX 29833027 29833743 -147140397 - MSTA-int LTR MaLR -894 757 1 2179 120 141 5 chrX 29833744 29834120 -147140020 - MSTA LTR MaLR -1 427 1 1159 265 65 22 chrX 29834127 29834497 -147139643 + MLT1I LTR MaLR 24 409 0 673 235 13 13 chrX 29835229 29835382 -147138758 - MER5B DNA MER1_type -6 172 20 1062 257 23 13 chrX 29835384 29835684 -147138456 - LTR16A LTR ERVL -7 443 141 2320 99 0 0 chrX 29835718 29836020 -147138120 - AluSg SINE Alu -8 302 1 22 35 0 0 chrX 29836101 29836130 -147138010 + AT_rich Low_complexity Low_complexity 1 29 0 730 256 62 50 chrX 29836148 29836406 -147137734 + MIR SINE MIR 2 262 0 2283 122 0 0 chrX 29836577 29836889 -147137251 + AluSx SINE Alu 1 312 0 1982 124 6 44 chrX 29836978 29837293 -147136847 + AluJb SINE Alu 3 305 -7 201 300 111 0 chrX 29837303 29837393 -147136747 - L2 LINE L2 -349 2923 2824 2106 221 76 73 chrX 29837407 29838199 -147135941 + MER21B LTR ERV1 12 805 -58 1389 262 11 47 chrX 29838348 29838791 -147135349 + LTR16A LTR ERVL 22 448 -2 2476 62 3 0 chrX 29839063 29839355 -147134785 + AluSc SINE Alu 1 293 -16 692 324 26 16 chrX 29839491 29839874 -147134266 - L1M4 LINE L1 -2685 3461 3075 258 32 0 0 chrX 29839931 29839962 -147134178 + (TG)n Simple_repeat Simple_repeat 2 32 0 455 300 69 46 chrX 29840091 29840484 -147133656 + L1MC/D LINE L1 4151 4552 -1594 198 118 0 0 chrX 29840500 29840534 -147133606 + (TG)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chrX 29840535 29840563 -147133577 + AT_rich Low_complexity Low_complexity 1 28 0 508 284 73 51 chrX 29840569 29841133 -147133007 + L1MC/D LINE L1 4630 5205 -941 252 295 45 9 chrX 29841736 29841848 -147132292 - HERV16 LTR ERVL -1202 3794 3679 2876 328 29 11 chrX 29841880 29842628 -147131512 - HERV16 LTR ERVL -3583 1413 631 2289 71 44 0 chrX 29842628 29842922 -147131218 + AluY SINE Alu 1 307 -4 2876 328 29 11 chrX 29842922 29843454 -147130686 - HERV16 LTR ERVL -4365 631 110 1074 243 60 13 chrX 29843558 29843875 -147130265 - LTR16B LTR ERVL -4 460 129 353 259 28 19 chrX 29844045 29844153 -147129987 - LTR67 LTR ERVL 0 557 449 630 195 0 8 chrX 29844392 29844510 -147129630 - LTR28 LTR ERV1 -903 117 1 294 295 98 9 chrX 29844584 29844696 -147129444 - LTR67 LTR ERVL -400 157 36 247 353 25 5 chrX 29844760 29844964 -147129176 + L1MC/D LINE L1 5699 5906 -1902 2630 225 78 27 chrX 29845411 29846114 -147128026 + MER21B LTR ERV1 1 739 -124 2287 98 0 3 chrX 29846626 29846922 -147127218 - AluSq SINE Alu -17 296 2 640 333 51 41 chrX 29847137 29847549 -147126591 + LTR16C LTR ERVL 76 491 0 2563 248 48 20 chrX 29850237 29851004 -147123136 - L1ME1 LINE L1 -55 6111 5323 843 163 0 0 chrX 29851013 29851166 -147122974 - L1MD1 LINE L1 -8 6234 6082 22 0 0 0 chrX 29851186 29851208 -147122932 + AT_rich Low_complexity Low_complexity 1 22 0 6026 231 45 12 chrX 29851225 29853863 -147120277 - L1MD1 LINE L1 -454 5905 3177 229 111 0 0 chrX 29854231 29854267 -147119873 + MLT1B LTR MaLR 1 36 -354 988 174 31 10 chrX 29854766 29854961 -147119179 - MER3 DNA MER1_type -10 199 1 357 221 75 79 chrX 29855200 29855454 -147118686 - L1ME4a LINE L1 -216 5905 5653 2383 178 26 5 chrX 29856073 29856490 -147117650 - MSTB LTR MaLR 0 426 1 917 157 35 12 chrX 29857093 29857265 -147116875 + MER3 DNA MER1_type 24 199 -10 755 263 59 24 chrX 29859331 29859586 -147114554 - LTR16A LTR ERVL 0 450 187 2253 85 0 3 chrX 29860562 29860866 -147113274 - AluSx SINE Alu 0 303 1 24 32 0 0 chrX 29861148 29861179 -147112961 + AT_rich Low_complexity Low_complexity 1 31 0 653 219 0 0 chrX 29861587 29861715 -147112425 - MER2 DNA MER2_type -190 155 28 845 246 127 29 chrX 29861751 29862097 -147112043 + L1M4 LINE L1 155 534 -5862 692 200 0 21 chrX 29862124 29862264 -147111876 + AluJo SINE Alu 1 137 -175 211 194 0 0 chrX 29862264 29862300 -147111840 + (TAAG)n Simple_repeat Simple_repeat 1 36 0 966 217 22 11 chrX 29862300 29862572 -147111568 + L1M4 LINE L1 570 844 -5552 3476 202 46 11 chrX 29862584 29863675 -147110465 + L1M4 LINE L1 4451 5579 -674 666 225 46 18 chrX 29863671 29863889 -147110251 + L1MEc LINE L1 1749 1972 -4424 * 688 244 93 65 chrX 29863889 29863959 -147110181 + L1MDa LINE L1 121 188 -6352 234 0 0 0 chrX 29863959 29863985 -147110155 + (TG)n Simple_repeat Simple_repeat 2 27 0 688 244 93 65 chrX 29863985 29864060 -147110080 + L1MDa LINE L1 188 259 -6281 180 0 0 0 chrX 29864060 29864080 -147110060 + (CAA)n Simple_repeat Simple_repeat 2 21 0 688 244 93 65 chrX 29864080 29864257 -147109883 + L1MDa LINE L1 259 453 -6087 596 246 87 0 chrX 29864509 29864704 -147109436 + L1MC4a LINE L1 6247 6458 -1350 471 203 48 52 chrX 29864716 29864963 -147109177 + MER58 DNA MER1_type 2 2419 -1 785 224 87 9 chrX 29864963 29865182 -147108958 + L1MC3 LINE L1 6437 6672 -1113 15275 205 12 13 chrX 29865472 29870953 -147103187 - L1PA15 LINE L1 0 6816 1328 252 0 0 0 chrX 29871036 29871064 -147103076 + (TG)n Simple_repeat Simple_repeat 1 28 0 2124 304 28 19 chrX 29871191 29871976 -147102164 - L1PA15 LINE L1 -5995 792 1 277 167 0 19 chrX 29873035 29873089 -147101051 - Tigger5 DNA MER2_type 0 2323 2271 324 171 0 110 chrX 29873102 29873184 -147100956 - Tigger5 DNA MER2_type -2248 75 3 2041 131 133 16 chrX 29873454 29873837 -147100303 - MSTA LTR MaLR 0 428 1 8295 146 10 64 chrX 29873837 29875506 -147098634 - MSTA-int LTR MaLR 0 1580 3 1473 151 96 14 chrX 29875508 29875785 -147098355 - MSTA LTR MaLR 0 428 128 1652 131 4 4 chrX 29875785 29876044 -147098096 - THE1C LTR MaLR 0 375 117 315 173 5 10 chrX 29876041 29876141 -147097999 - LTR29 LTR ERV1 -90 617 452 * 31 0 0 0 chrX 29876141 29876172 -147097968 + AT_rich Low_complexity Low_complexity 1 31 0 384 287 23 8 chrX 29876210 29876339 -147097801 - MLT1I LTR MaLR -270 139 9 314 306 63 75 chrX 29876345 29876518 -147097622 + L1 LINE L1 3422 3596 -2550 6095 90 21 3 chrX 29876518 29877740 -147096400 + L1PA13 LINE L1 4924 6161 -2 314 306 63 75 chrX 29877740 29878403 -147095737 + L1 LINE L1 3596 4248 -1898 21414 180 20 21 chrX 29878406 29879683 -147094457 + L1PA11 LINE L1 20 1296 -6316 200 35 35 0 chrX 29879683 29879712 -147094428 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 21414 180 20 21 chrX 29879712 29884322 -147089818 + L1PA11 LINE L1 1296 6983 -629 2342 81 10 0 chrX 29884322 29884618 -147089522 - AluY SINE Alu -12 299 1 21414 180 20 21 chrX 29884618 29885246 -147088894 + L1PA11 LINE L1 6983 7610 -2 464 257 116 18 chrX 29885352 29885714 -147088426 - MER34 LTR ERV1 0 585 159 2225 106 0 13 chrX 29885740 29886043 -147088097 - AluSc SINE Alu -10 299 1 2343 122 42 4 chrX 29886043 29886494 -147087646 - MER34B LTR ERV1 -32 533 1 297 282 0 0 chrX 29886562 29886640 -147087500 - MER34 LTR ERV1 -458 84 7 1064 208 14 58 chrX 29886681 29886795 -147087345 + L1ME2 LINE L1 5789 5906 -258 1826 216 92 33 chrX 29886795 29887305 -147086835 - MLT1F LTR MaLR -2 540 1 1064 208 14 58 chrX 29887305 29887537 -147086603 + L1ME2 LINE L1 5906 6120 -44 2271 105 0 0 chrX 29887557 29887853 -147086287 - AluSx SINE Alu -16 296 1 1870 131 47 7 chrX 29888004 29888279 -147085861 + AluJb SINE Alu 1 286 -26 716 268 168 18 chrX 29888335 29888823 -147085317 + L1ME3A LINE L1 5397 5957 -205 270 267 158 0 chrX 29889640 29889805 -147084335 + L1ME3A LINE L1 5731 5921 -249 611 245 6 6 chrX 29890933 29891096 -147083044 + LTR16A1 LTR ERVL 282 444 -13 1278 188 95 35 chrX 29892216 29892583 -147081557 - MLT1C LTR MaLR 0 467 79 350 318 71 47 chrX 29892620 29892916 -147081224 - LTR16A1 LTR ERVL -8 449 147 2375 104 0 0 chrX 29893052 29893350 -147080790 + AluSx SINE Alu 1 298 -14 1834 137 68 41 chrX 29893395 29893760 -147080380 + THE1C LTR MaLR 1 375 0 1341 243 93 12 chrX 29893991 29894430 -147079710 - MER66A LTR ERV1 -1 477 97 429 267 31 56 chrX 29895406 29895567 -147078573 - MIR SINE MIR -22 240 84 608 245 21 0 chrX 29895606 29895749 -147078391 - MER105 DNA DNA -42 162 17 398 248 7 41 chrX 29896228 29896373 -147077767 + Charlie7 DNA MER1_type 513 652 -1960 1406 210 92 0 chrX 29896405 29896719 -147077421 - MER2 DNA MER2_type -2 343 1 1879 161 39 6 chrX 29896735 29897071 -147077069 + MER7A DNA MER2_type 1 345 -1 226 268 21 21 chrX 29897190 29897332 -147076808 + (TA)n Simple_repeat Simple_repeat 1 142 0 719 241 86 0 chrX 29898117 29898291 -147075849 + MIR SINE MIR 47 235 -27 3277 128 48 77 chrX 29898395 29898579 -147075561 - LTR29 LTR ERV1 0 622 434 1629 175 28 7 chrX 29898579 29898865 -147075275 - AluJo SINE Alu -20 292 1 3277 128 48 77 chrX 29898865 29899197 -147074943 - LTR29 LTR ERV1 -188 434 125 2405 72 3 0 chrX 29899197 29899490 -147074650 - AluSp SINE Alu -18 295 2 3277 128 48 77 chrX 29899490 29899612 -147074528 - LTR29 LTR ERV1 -497 125 1 3430 113 11 9 chrX 29899780 29900328 -147073812 - MER34C LTR ERV1 0 585 37 367 198 42 172 chrX 29900756 29900948 -147073192 + MIR SINE MIR 96 262 0 487 279 14 27 chrX 29901427 29901574 -147072566 + MIR SINE MIR 74 218 -44 21 57 0 0 chrX 29901582 29901617 -147072523 + AT_rich Low_complexity Low_complexity 1 35 0 869 165 51 0 chrX 29901617 29901793 -147072347 - MER31A LTR ERV1 0 485 301 6863 208 4 6 chrX 29901794 29903375 -147070765 + L1 LINE L1 2285 3862 -2284 4979 148 46 114 chrX 29903384 29904686 -147069454 - MER61C-int LTR ERV1 -3577 1640 458 1968 177 11 0 chrX 29904686 29905037 -147069103 - THE1A LTR MaLR 0 355 1 4979 148 46 114 chrX 29905037 29905278 -147068862 - MER61C-int LTR ERV1 -4759 458 202 571 222 49 21 chrX 29905407 29905551 -147068589 - MER61C-int LTR ERV1 -5068 149 2 2449 125 47 21 chrX 29905551 29905974 -147068166 - MER61C LTR ERV1 0 434 1 544 271 101 23 chrX 29906069 29906160 -147067980 + MIR SINE MIR 11 93 -169 1611 189 16 45 chrX 29906160 29906536 -147067604 + MLT1A1 LTR MaLR 1 365 0 544 271 101 23 chrX 29906536 29906662 -147067478 + MIR SINE MIR 93 245 -17 873 246 101 43 chrX 29906704 29907049 -147067091 + MLT1A1 LTR MaLR 1 365 0 316 304 164 0 chrX 29907282 29907453 -147066687 + MER110 LTR ERV1 165 363 -128 2183 143 0 0 chrX 29907456 29907763 -147066377 - AluSx SINE Alu -5 307 1 1040 288 132 22 chrX 29907774 29908222 -147065918 + L2 LINE L2 2809 3305 -8 2805 77 5 11 chrX 29908268 29908643 -147065497 + THE1C LTR MaLR 3 375 0 194 214 48 0 chrX 29908825 29908867 -147065273 + L2 LINE L2 2715 2758 -556 1106 210 9 31 chrX 29908871 29909100 -147065040 + MER58A DNA MER1_type 1 224 0 2421 119 12 20 chrX 29909198 29909600 -147064540 - MER39B LTR ERV1 0 653 255 7293 48 0 0 chrX 29909607 29910887 -147063253 - L1PA5 LINE L1 0 6154 4873 616 43 0 0 chrX 29910887 29910980 -147063160 + L1P LINE L1 3211 3303 -2843 1220 133 80 49 chrX 29910980 29911243 -147062897 - MER39B LTR ERV1 -378 275 5 562 273 91 0 chrX 29911247 29911423 -147062717 + MIR SINE MIR 52 243 -19 224 274 157 20 chrX 29912162 29912315 -147061825 + MIR SINE MIR 67 240 -22 1200 254 44 24 chrX 29912663 29913174 -147060966 - MLT1E LTR MaLR -16 561 1 528 246 0 17 chrX 29913263 29913381 -147060759 + L2 LINE L2 3198 3313 0 511 227 52 34 chrX 29963898 29964061 -147010079 - L1ME LINE L1 -580 5586 5422 1829 126 36 27 chrX 29964061 29964362 -147009778 - AluJo SINE Alu -8 304 1 511 227 52 34 chrX 29964362 29964405 -147009735 - L1ME LINE L1 -744 5422 5381 717 295 11 0 chrX 29964433 29964701 -147009439 - L1ME LINE L1 -3126 3020 2750 427 308 124 49 chrX 29964865 29965251 -147008889 + L1M4 LINE L1 2779 3193 -2953 407 241 47 99 chrX 29965264 29965455 -147008685 - MLT1J2 LTR MaLR 0 450 270 355 350 6 17 chrX 29965691 29965871 -147008269 + L1M4 LINE L1 3251 3428 -2718 912 196 105 40 chrX 29965886 29966182 -147007958 - MER39 LTR ERV1 0 707 393 660 170 21 50 chrX 29966199 29966340 -147007800 + MER34C LTR ERV1 323 459 -126 1252 222 48 4 chrX 29966340 29966610 -147007530 - MER4D LTR ERV1 0 903 622 22 35 0 0 chrX 29966757 29966786 -147007354 + AT_rich Low_complexity Low_complexity 1 29 0 379 132 0 0 chrX 29966795 29966848 -147007292 + LTR23-int LTR ERV1 3732 3784 -1433 451 125 0 12 chrX 29966929 29967009 -147007131 + LTR23-int LTR ERV1 1500 1578 -3545 811 204 2 37 chrX 29967016 29967218 -147006922 + MER61E LTR ERV1 347 779 0 2858 227 54 36 chrX 29967387 29968436 -147005704 + LTR23-int LTR ERV1 756 2646 -3685 487 254 148 6 chrX 29968438 29968607 -147005533 + MER34C LTR ERV1 160 352 -233 1639 179 103 92 chrX 29968608 29968765 -147005375 + LTR23-int LTR ERV1 1169 1323 -3800 1787 161 20 17 chrX 29968765 29969063 -147005077 + AluSx SINE Alu 1 299 -13 1639 179 103 92 chrX 29969063 29969142 -147004998 + LTR23-int LTR ERV1 1323 1400 -3723 2219 111 3 0 chrX 29969142 29969439 -147004701 + AluSc SINE Alu 1 298 -11 1639 179 103 92 chrX 29969439 29969775 -147004365 + LTR23-int LTR ERV1 1400 1748 -3375 706 62 0 21 chrX 29969875 29969971 -147004169 + MER11D LTR ERVK 804 897 0 1574 180 50 0 chrX 29970013 29970169 -147003971 - AluJo SINE Alu -20 292 114 213 65 0 0 chrX 29970169 29970200 -147003940 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1574 180 50 0 chrX 29970200 29970321 -147003819 - AluJo SINE Alu -198 114 1 1740 83 0 0 chrX 29970657 29970873 -147003267 + AluSc SINE Alu 84 299 -10 594 220 15 8 chrX 29971772 29971904 -147002236 + MER94 DNA DNA 1 133 -1 8535 104 16 37 chrX 29972792 29973207 -147000933 + HSMAR2 DNA Mariner 1 423 -879 1965 111 117 27 chrX 29973207 29973541 -147000599 + THE1B LTR MaLR 1 364 0 12149 76 8 1 chrX 29973541 29975110 -146999030 + THE1B-int LTR MaLR 1 1580 0 2372 127 8 24 chrX 29975110 29975480 -146998660 + THE1B LTR MaLR 1 364 0 8535 104 16 37 chrX 29975480 29976142 -146997998 + HSMAR2 DNA Mariner 421 1095 -207 1672 174 7 14 chrX 29976142 29976423 -146997717 + AluJo SINE Alu 4 282 -30 207 0 0 0 chrX 29976426 29976449 -146997691 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8535 104 16 37 chrX 29976449 29976693 -146997447 + HSMAR2 DNA Mariner 1097 1301 -1 1890 202 8 11 chrX 29977348 29977714 -146996426 - MLT1A1 LTR MaLR 0 365 1 293 305 36 24 chrX 29977888 29978076 -146996064 - MLT1I LTR MaLR 0 422 267 2023 233 89 43 chrX 29979707 29980313 -146993827 + MER21B LTR ERV1 19 652 -211 316 241 49 28 chrX 29980604 29980712 -146993428 + MER5A DNA MER1_type 70 189 0 361 219 79 72 chrX 29981703 29981968 -146992172 + HAL1 LINE L1 848 1114 -1393 1841 94 11 11 chrX 29982263 29982528 -146991612 - L1PA11 LINE L1 0 6174 5910 1031 211 68 48 chrX 29982580 29982935 -146991205 + L1M1 LINE L1 3251 3612 -3953 * 2618 29 0 0 chrX 29982927 29983240 -146990900 - L1HS LINE L1 -1081 5065 4753 7810 9 3 2 chrX 29983240 29984316 -146989824 + L1HS LINE L1 5063 6139 -16 266 98 20 0 chrX 29984316 29984367 -146989773 + (TAAAA)n Simple_repeat Simple_repeat 4 55 0 225 0 0 0 chrX 29984504 29984529 -146989611 + (A)n Simple_repeat Simple_repeat 1 25 0 12346 186 33 22 chrX 29984529 29986028 -146988112 + L1MDa LINE L1 2570 4051 -2489 186 71 0 0 chrX 29986028 29986056 -146988084 + (CAA)n Simple_repeat Simple_repeat 3 30 0 12346 186 33 22 chrX 29986056 29986139 -146988001 + L1MDa LINE L1 4051 4132 -2408 1886 141 61 3 chrX 29986139 29986465 -146987675 + L1PB3 LINE L1 5803 6147 -7 12346 186 33 22 chrX 29986465 29987695 -146986445 + L1MDa LINE L1 4132 5411 -1129 4463 49 0 0 chrX 29987694 29988246 -146985894 - L1P LINE L1 -1191 4955 4404 * 486 254 124 64 chrX 29988799 29989255 -146984885 - L1MC5 LINE L1 -58 7903 7397 2008 143 42 66 chrX 29989255 29989681 -146984459 + MER47B DNA MER2_type 3 418 0 486 254 124 64 chrX 29989681 29989853 -146984287 - L1MC5 LINE L1 -564 7397 7237 351 0 0 0 chrX 29990640 29990679 -146983461 + (CA)n Simple_repeat Simple_repeat 1 39 0 2043 165 32 54 chrX 29991319 29991761 -146982379 + MSTB1 LTR MaLR 1 432 0 644 74 11 0 chrX 29992177 29992272 -146981868 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1968 121 50 0 chrX 29992328 29992609 -146981531 + AluSq SINE Alu 1 295 -18 794 215 83 68 chrX 29992798 29993245 -146980895 - L1MC5 LINE L1 -34 7927 7471 2049 123 10 0 chrX 29993245 29993547 -146980593 - AluSx SINE Alu -7 305 1 794 215 83 68 chrX 29993547 29993568 -146980572 - L1MC5 LINE L1 -490 7471 7452 22 56 0 0 chrX 29993693 29993729 -146980411 + AT_rich Low_complexity Low_complexity 1 36 0 416 192 0 0 chrX 29993788 29993861 -146980279 + MER116 DNA Mariner 3 75 -5 792 254 0 0 chrX 29993900 29994085 -146980055 + L1MC5 LINE L1 6643 6827 -1134 26 0 0 0 chrX 29994738 29994764 -146979376 + AT_rich Low_complexity Low_complexity 1 26 0 301 217 80 94 chrX 29995223 29995361 -146978779 - HAL1 LINE L1 -1229 1278 1143 1803 181 47 49 chrX 29995473 29995779 -146978361 + MER31B LTR ERV1 38 344 -122 2066 152 6 3 chrX 29995779 29996134 -146978006 - MER46B DNA MER2_type -1 235 5 1803 181 47 49 chrX 29996134 29996257 -146977883 + MER31B LTR ERV1 344 466 0 199 204 23 0 chrX 29997660 29997704 -146976436 - MIR SINE MIR -121 141 97 5938 155 21 35 chrX 29997862 29999999 -146974141 + L1MA8 LINE L1 5068 6678 -7 313 113 0 0 chrX 30000101 30000154 -146973986 + L1MA8 LINE L1 6236 6288 -3 15485 171 44 9 chrX 30000163 30004564 -146969576 + L1PBa LINE L1 1 4555 -2307 2621 59 0 12 chrX 30004664 30005002 -146969138 + L1PA8A LINE L1 5798 6131 0 2275 109 42 25 chrX 30007509 30007867 -146966273 - THE1B LTR MaLR 0 364 1 796 211 67 39 chrX 30008441 30008649 -146965491 + MIR SINE MIR 49 262 0 180 0 0 0 chrX 30009006 30009026 -146965114 + (TG)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chrX 30010278 30010298 -146963842 + (CAA)n Simple_repeat Simple_repeat 2 21 0 468 329 20 0 chrX 30010579 30010731 -146963409 + MLT1F LTR MaLR 388 542 0 388 298 116 6 chrX 30010731 30010912 -146963228 + MLT1F1-int LTR MaLR 1 201 -1170 1011 167 17 103 chrX 30010952 30011120 -146963020 - AluJo SINE Alu -15 297 153 221 0 0 33 chrX 30011120 30011150 -146962990 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1011 167 17 103 chrX 30011150 30011214 -146962926 - AluJo SINE Alu -159 153 85 787 258 40 20 chrX 30011214 30011466 -146962674 + MLT1F1-int LTR MaLR 345 601 -770 983 309 78 67 chrX 30011711 30012367 -146961773 + MLT1F1-int LTR MaLR 704 1366 -5 1791 253 58 17 chrX 30012372 30012906 -146961234 + MLT1F1 LTR MaLR 1 559 -8 1759 213 229 26 chrX 30012915 30013492 -146960648 + MER39 LTR ERV1 12 705 -2 25 0 0 0 chrX 30013510 30013535 -146960605 + AT_rich Low_complexity Low_complexity 1 25 0 663 306 102 44 chrX 30013545 30014253 -146959887 + L1M4 LINE L1 2211 2877 -3269 2818 73 92 5 chrX 30014253 30014665 -146959475 + LTR7 LTR ERV1 1 448 -2 663 306 102 44 chrX 30014665 30015537 -146958603 + L1M4 LINE L1 2877 3933 -2213 25 51 0 0 chrX 30015611 30015650 -146958490 + AT_rich Low_complexity Low_complexity 1 39 0 687 276 110 33 chrX 30016714 30017051 -146957089 + MER34C LTR ERV1 1 363 -222 383 280 116 94 chrX 30017340 30017712 -146956428 + MLT1H LTR MaLR 168 547 -2 2077 147 0 0 chrX 30017732 30018044 -146956096 + AluJo SINE Alu 1 312 0 463 286 14 29 chrX 30018405 30018545 -146955595 - L2 LINE L2 -272 3041 2904 2394 90 0 0 chrX 30019337 30019637 -146954503 + AluSc SINE Alu 1 300 -9 24 0 0 0 chrX 30019666 30019690 -146954450 + AT_rich Low_complexity Low_complexity 1 24 0 2281 75 0 26 chrX 30020076 30020384 -146953756 + AluY SINE Alu 12 311 0 25 51 0 0 chrX 30020531 30020570 -146953570 + AT_rich Low_complexity Low_complexity 1 39 0 1682 162 10 27 chrX 30022395 30022692 -146951448 - AluJo SINE Alu -20 292 1 457 230 191 51 chrX 30022795 30023052 -146951088 - L1MC4 LINE L1 -272 7770 7478 2147 136 0 7 chrX 30023126 30023435 -146950705 - AluSq SINE Alu -6 307 1 3241 205 18 29 chrX 30023458 30024230 -146949910 + MER97a DNA MER1_type? 118 881 -13 1919 162 46 14 chrX 30024276 30024627 -146949513 - LOR1b LTR ERV1 0 461 100 1370 268 55 81 chrX 30024692 30025511 -146948629 - L2 LINE L2 0 3313 2516 1450 251 79 24 chrX 30025834 30026340 -146947800 - L1ME3A LINE L1 -3 6167 5634 1826 117 37 0 chrX 30026468 30026741 -146947399 - MER49 LTR ERV1 -640 283 1 754 112 48 8 chrX 30026741 30026866 -146947274 + MER34C LTR ERV1 456 585 0 357 369 60 4 chrX 30026920 30027188 -146946952 - L1ME3A LINE L1 -224 6015 5733 353 248 87 31 chrX 30027198 30027359 -146946781 + LTR68 LTR ERV1 8 177 -563 539 296 65 30 chrX 30027782 30028446 -146945694 - L1ME3A LINE L1 -517 5716 5033 315 0 0 0 chrX 30028707 30028742 -146945398 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 324 0 0 0 chrX 30028741 30028777 -146945363 + (GA)n Simple_repeat Simple_repeat 1 36 0 470 288 106 49 chrX 30029093 30029642 -146944498 - L1ME3A LINE L1 -1216 4999 4420 826 350 68 14 chrX 30029642 30030082 -146944058 + LTR16B LTR ERVL 1 464 0 2411 329 26 13 chrX 30030516 30030701 -146943439 + HERV16 LTR ERVL 469 650 -4346 937 55 86 0 chrX 30030701 30030829 -146943311 + MER85 DNA T2_type 1 139 0 2411 329 26 13 chrX 30030829 30031558 -146942582 + HERV16 LTR ERVL 650 1395 -3601 408 313 72 19 chrX 30032140 30032432 -146941708 - L1ME3A LINE L1 -1038 1538 1237 2730 186 141 19 chrX 30032770 30033467 -146940673 + LTR48 LTR ERV1 1 782 -5 3324 156 10 21 chrX 30033618 30034210 -146939930 + MER34C LTR ERV1 1 585 0 412 240 39 78 chrX 30034435 30034520 -146939620 - L1ME3A LINE L1 -177 5993 5906 2809 174 131 13 chrX 30034520 30035152 -146938988 - MER39 LTR ERV1 0 707 1 412 240 39 78 chrX 30035152 30035169 -146938971 - L1ME3A LINE L1 -264 5906 5890 1163 210 114 50 chrX 30035169 30035512 -146938628 - MLT1A1 LTR MaLR 0 365 1 412 240 39 78 chrX 30035512 30035612 -146938528 - L1ME3A LINE L1 -280 5890 5798 1478 187 28 3 chrX 30035612 30035895 -146938245 + MLT1A1 LTR MaLR 1 290 -75 419 284 24 0 chrX 30035895 30036022 -146938118 - L1ME3A LINE L1 -544 5626 5497 * 754 281 15 0 chrX 30036018 30036221 -146937919 - L1ME LINE L1 -534 5636 5431 3209 216 33 31 chrX 30036229 30036752 -146937388 - L1ME1 LINE L1 -50 6185 5665 1771 110 103 15 chrX 30036752 30037025 -146937115 + AluSg SINE Alu 1 297 -13 3209 216 33 31 chrX 30037025 30037503 -146936637 - L1ME1 LINE L1 -570 5665 5186 3139 44 65 30 chrX 30037503 30037932 -146936208 - MLT2A1 LTR ERVL 0 444 1 3209 216 33 31 chrX 30037932 30038064 -146936076 - L1ME1 LINE L1 -1049 5186 5056 2571 231 30 52 chrX 30038071 30038876 -146935264 - L1ME1 LINE L1 -5576 820 34 229 239 53 18 chrX 30038870 30038983 -146935157 - L1ME LINE L1 -2378 5430 5314 * 434 276 108 84 chrX 30040062 30040276 -146933864 - MLT1H LTR MaLR -16 533 315 656 215 67 77 chrX 30040288 30040497 -146933643 - LTR48B LTR ERV1 0 644 438 2311 124 41 41 chrX 30040504 30040793 -146933347 + LTR23 LTR ERV1 1 292 -145 1853 134 4 0 chrX 30040793 30041062 -146933078 + AluSq SINE Alu 44 313 0 2311 124 41 41 chrX 30041062 30041209 -146932931 + LTR23 LTR ERV1 291 437 0 3340 128 23 15 chrX 30041927 30042449 -146931691 + MER61E LTR ERV1 1 526 -43 6064 229 81 72 chrX 30042482 30045225 -146928915 + HUERS-P3b LTR ERV1 37 870 -4347 4081 175 1 13 chrX 30045235 30045925 -146928215 - LTR8 LTR ERV1 -9 682 1 7620 150 29 36 chrX 30045925 30048947 -146925193 + HUERS-P3b LTR ERV1 868 5175 -450 907 206 38 5 chrX 30048950 30049134 -146925006 + HUERS-P3 LTR ERV1 8730 8919 0 2387 106 52 3 chrX 30049134 30049483 -146924657 + MER61E LTR ERV1 1 366 -203 2000 124 3 24 chrX 30049485 30049776 -146924364 + AluSx SINE Alu 1 285 -27 518 194 106 17 chrX 30049901 30050081 -146924059 + LTR23-int LTR ERV1 1726 1921 -3202 1019 197 98 26 chrX 30050121 30050355 -146923785 - MSTA LTR MaLR -177 251 1 8698 164 67 28 chrX 30050355 30050611 -146923529 + LTR23-int LTR ERV1 2157 2402 -3929 2661 94 8 3 chrX 30050611 30050972 -146923168 + THE1B LTR MaLR 1 363 -1 8698 164 67 28 chrX 30050972 30051370 -146922770 + LTR23-int LTR ERV1 2402 2783 -3548 2213 93 37 0 chrX 30051370 30051670 -146922470 - AluSq SINE Alu 0 313 3 8698 164 67 28 chrX 30051670 30053240 -146920900 + LTR23-int LTR ERV1 2783 5669 -662 629 195 0 8 chrX 30053253 30053376 -146920764 + LTR23-int LTR ERV1 4784 4905 -218 2233 148 38 23 chrX 30053490 30053917 -146920223 + LTR23 LTR ERV1 4 436 -1 634 214 60 38 chrX 30053918 30054249 -146919891 - LTR48B LTR ERV1 -214 573 1 375 290 14 14 chrX 30054379 30054517 -146919623 - MLT1H LTR MaLR -389 160 23 3237 148 22 55 chrX 30054521 30055143 -146918997 - LTR29 LTR ERV1 -20 602 1 2870 170 33 95 chrX 30055329 30056066 -146918074 + LTR8 LTR ERV1 1 691 0 2173 124 0 3 chrX 30056311 30056617 -146917523 + AluSg SINE Alu 1 305 -5 21 36 0 0 chrX 30056634 30056662 -146917478 + AT_rich Low_complexity Low_complexity 1 28 0 257 284 0 87 chrX 30057578 30057705 -146916435 - HAL1b LINE L1 -869 479 364 845 295 136 30 chrX 30057856 30058320 -146915820 - LTR33 LTR ERVL 0 521 9 1911 190 31 39 chrX 30059181 30059500 -146914640 + MLT2D LTR ERVL 2 322 -92 1832 170 28 25 chrX 30059500 30059864 -146914276 + MLT1A1 LTR MaLR 1 365 0 1911 190 31 39 chrX 30059864 30059921 -146914219 + MLT2D LTR ERVL 322 377 -37 279 79 0 0 chrX 30059921 30059959 -146914181 + (CA)n Simple_repeat Simple_repeat 2 39 0 1911 190 31 39 chrX 30059959 30059997 -146914143 + MLT2D LTR ERVL 377 414 0 431 263 36 7 chrX 30060524 30060661 -146913479 - LTR16C LTR ERVL 0 491 351 1623 207 66 35 chrX 30060664 30061151 -146912989 - MLT1D LTR MaLR 0 505 4 420 193 45 0 chrX 30061216 30061304 -146912836 - MLT2F LTR ERVL -571 92 1 823 193 84 92 chrX 30061304 30061697 -146912443 - ERVL-F LTR ERVL -8 5756 5367 1859 197 22 17 chrX 30061709 30062069 -146912071 + LTR49-int LTR ERV1 484 845 -5486 2179 116 10 54 chrX 30062102 30062370 -146911770 + LTR49-int LTR ERV1 842 1089 -5242 2456 85 3 0 chrX 30062370 30062677 -146911463 + AluSx SINE Alu 1 308 -4 2179 116 10 54 chrX 30062677 30062797 -146911343 + LTR49-int LTR ERV1 1089 1213 -5118 384 261 0 0 chrX 30062797 30062866 -146911274 + tRNA-Glu-GAG tRNA tRNA 7 75 0 484 137 0 11 chrX 30062919 30063014 -146911126 + LTR48B-int LTR ERV1 1290 1383 -4948 969 118 13 7 chrX 30063127 30063279 -146910861 + LTR48B-int LTR ERV1 1377 1529 -4802 511 112 22 0 chrX 30063279 30063368 -146910772 + G-rich Low_complexity Low_complexity 4 94 0 659 20 40 20 chrX 30063372 30063473 -146910667 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 9223 131 21 35 chrX 30063475 30065062 -146909078 + LTR48B-int LTR ERV1 1528 3091 -3240 476 115 11 0 chrX 30065053 30065140 -146909000 + LTR48B-int LTR ERV1 4296 4383 -1948 * 7518 164 20 13 chrX 30065149 30066748 -146907392 + LTR48B-int LTR ERV1 4510 6164 -167 1098 217 9 5 chrX 30066845 30067057 -146907083 + LTR48B LTR ERV1 1 213 -431 226 146 73 0 chrX 30068476 30068517 -146905623 + MLT1J LTR MaLR 109 152 -359 1123 211 136 19 chrX 30068521 30068881 -146905259 - LTR48B LTR ERV1 0 644 243 1371 250 91 62 chrX 30069578 30070413 -146903727 + L2 LINE L2 2464 3307 -6 2012 256 136 6 chrX 30070999 30071537 -146902603 + MLT2F LTR ERVL 1 608 -55 1002 128 47 90 chrX 30071599 30071810 -146902330 + MER20 DNA MER1_type 1 202 -17 5985 266 60 33 chrX 30071893 30072082 -146902058 + ERVL-F LTR ERVL 2 184 -5580 715 195 158 62 chrX 30072082 30072482 -146901658 + LTR21B LTR ERV1 1 438 0 5985 266 60 33 chrX 30072482 30073257 -146900883 + ERVL-F LTR ERVL 184 936 -4828 1485 162 71 81 chrX 30073257 30073651 -146900489 - MLT1B LTR MaLR 0 390 1 5985 266 60 33 chrX 30073651 30074088 -146900052 + ERVL-F LTR ERVL 936 1360 -4404 2429 182 24 4 chrX 30074088 30074544 -146899596 + MLT1C LTR MaLR 3 467 0 5985 266 60 33 chrX 30074544 30075359 -146898781 + ERVL-F LTR ERVL 1360 2351 -3413 348 225 0 0 chrX 30075365 30075436 -146898704 + MLT1E LTR MaLR 75 145 -448 1571 217 108 35 chrX 30075450 30075856 -146898284 + MLT1E LTR MaLR 114 549 -44 722 303 64 47 chrX 30076359 30076660 -146897480 + L1MEd LINE L1 844 1138 -5258 2370 42 3 17 chrX 30076660 30076972 -146897168 + AluY SINE Alu 1 308 0 722 303 64 47 chrX 30076972 30077399 -146896741 + L1MEd LINE L1 1138 1645 -4751 1403 167 9 123 chrX 30077399 30077740 -146896400 + AluJo SINE Alu 1 302 0 722 303 64 47 chrX 30077740 30077861 -146896279 + L1MEd LINE L1 1645 1762 -4634 22 0 0 0 chrX 30077916 30077938 -146896202 + AT_rich Low_complexity Low_complexity 1 22 0 541 335 34 44 chrX 30078049 30078345 -146895795 - MLT1I LTR MaLR -19 390 98 1075 259 79 10 chrX 30078649 30079147 -146894993 + L1MEd LINE L1 2113 2599 -3616 216 0 0 0 chrX 30079251 30079275 -146894865 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1781 177 3 0 chrX 30079285 30079573 -146894567 - AluJb SINE Alu -23 289 1 26 50 0 0 chrX 30080230 30080270 -146893870 + AT_rich Low_complexity Low_complexity 1 40 0 260 246 8 51 chrX 30080546 30080664 -146893476 + HAL1b LINE L1 318 430 -918 21 0 0 0 chrX 30080978 30080999 -146893141 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chrX 30082991 30083035 -146891105 + AT_rich Low_complexity Low_complexity 1 44 0 260 70 23 0 chrX 30083186 30083229 -146890911 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1910 112 106 124 chrX 30084235 30084671 -146889469 + MSTA LTR MaLR 1 428 0 881 281 63 1 chrX 30084685 30085060 -146889080 + MLT1H LTR MaLR 129 547 -2 345 62 0 0 chrX 30086631 30086679 -146887461 + (TG)n Simple_repeat Simple_repeat 2 49 0 860 344 65 34 chrX 30087066 30087832 -146886308 - L2 LINE L2 -4 3309 2521 23829 143 16 15 chrX 30087856 30092673 -146881467 - L1MA3 LINE L1 -6 7718 2878 186 43 0 0 chrX 30092673 30092696 -146881444 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 23829 143 16 15 chrX 30092696 30095567 -146878573 - L1MA3 LINE L1 -4846 2878 13 372 305 93 61 chrX 30095569 30095815 -146878325 - L2 LINE L2 -814 2500 2247 1003 274 121 40 chrX 30096114 30096570 -146877570 + L2 LINE L2 125 617 -2697 276 288 90 0 chrX 30096583 30096694 -146877446 + L2 LINE L2 837 957 -2357 199 345 14 42 chrX 30096697 30096839 -146877301 + L2 LINE L2 1239 1376 -1938 1090 280 61 53 chrX 30097024 30097670 -146876470 + L2 LINE L2 2661 3313 0 274 388 33 0 chrX 30097725 30097877 -146876263 - L2 LINE L2 -926 2388 2232 2231 186 60 25 chrX 30097887 30098371 -146875769 - MLT1D LTR MaLR -2 503 3 209 321 45 70 chrX 30098415 30098658 -146875482 - L2 LINE L2 -1232 2082 1846 480 200 0 0 chrX 30099399 30099484 -146874656 + MIR SINE MIR 71 155 -107 590 246 128 11 chrX 30099548 30099727 -146874413 - MIR SINE MIR 0 262 63 1411 143 0 74 chrX 30099936 30100131 -146874009 + MSTB LTR MaLR 1 176 -250 2421 81 0 3 chrX 30100131 30100438 -146873702 + AluY SINE Alu 1 306 -5 1411 143 0 74 chrX 30100438 30100486 -146873654 + MSTB LTR MaLR 176 226 -200 1268 155 15 19 chrX 30100487 30100693 -146873447 - AluJo SINE Alu -13 299 95 248 310 14 0 chrX 30100722 30100793 -146873347 + LTR33 LTR ERVL 150 221 -300 591 259 44 34 chrX 30100825 30101030 -146873110 + LTR33 LTR ERVL 307 513 -8 234 307 130 61 chrX 30101727 30101958 -146872182 + MIR SINE MIR 16 262 0 2714 7 3 10 chrX 30102881 30103186 -146870954 - AluYa5 SINE Alu -8 303 1 782 255 50 13 chrX 30103293 30103557 -146870583 + LTR16A1 LTR ERVL 195 451 -6 217 402 21 0 chrX 30103620 30103717 -146870423 - L2 LINE L2 -223 3049 2951 272 291 96 10 chrX 30103743 30103858 -146870282 + MIR SINE MIR 8 130 -78 4893 129 18 0 chrX 30103871 30104655 -146869485 - L1MA4 LINE L1 -12 7707 6910 491 72 63 0 chrX 30104657 30104768 -146869372 + (TA)n Simple_repeat Simple_repeat 2 119 0 1809 148 3 44 chrX 30104769 30105261 -146868879 - L1MA4 LINE L1 -743 6822 6427 7518 30 5 0 chrX 30105261 30106455 -146867685 - L1PA5 LINE L1 -5 6149 4955 8655 49 2 0 chrX 30106455 30107525 -146866615 + L1PA5 LINE L1 3884 4955 -1191 * 12557 189 35 24 chrX 30107524 30108757 -146865383 - L1MA4 LINE L1 -1129 6436 5217 1886 141 61 3 chrX 30108757 30109083 -146865057 - L1PB3 LINE L1 -7 6147 5803 12557 189 35 24 chrX 30109083 30109166 -146864974 - L1MA4 LINE L1 -2348 5217 5136 186 71 0 0 chrX 30109166 30109194 -146864946 + (TTG)n Simple_repeat Simple_repeat 3 30 0 12557 189 35 24 chrX 30109194 30111028 -146863112 - L1MA4 LINE L1 -2429 5136 3251 1834 103 11 15 chrX 30111072 30111345 -146862795 + L1PA11 LINE L1 5903 6174 0 361 219 79 72 chrX 30111640 30111905 -146862235 - HAL1 LINE L1 -1393 1114 848 371 270 48 40 chrX 30112896 30113022 -146861118 - MER5A DNA MER1_type 0 189 63 781 206 26 5 chrX 30113028 30113222 -146860918 - L1MC2 LINE L1 -11 6333 6136 2033 148 88 3 chrX 30113222 30113580 -146860560 - L1MC3 LINE L1 -193 7592 7204 295 225 45 22 chrX 30113580 30113669 -146860471 - MLT1F1 LTR MaLR -434 133 43 279 170 38 0 chrX 30113789 30113842 -146860298 + MER5B DNA MER1_type 123 177 -1 206 231 0 0 chrX 30115784 30115823 -146858317 + (CA)n Simple_repeat Simple_repeat 1 39 0 327 331 115 0 chrX 30116816 30116955 -146857185 - LTR67 LTR ERVL -367 190 36 2065 129 13 10 chrX 30117008 30117317 -146856823 + AluSx SINE Alu 1 310 -2 268 281 67 52 chrX 30117879 30118014 -146856126 - L2 LINE L2 -4 3268 3132 508 176 69 0 chrX 30118184 30118286 -146855854 + L1MC4 LINE L1 7925 8033 -9 25 0 0 0 chrX 30118752 30118777 -146855363 + AT_rich Low_complexity Low_complexity 1 25 0 189 74 0 0 chrX 30119552 30119579 -146854561 + (T)n Simple_repeat Simple_repeat 1 27 0 962 146 61 0 chrX 30119822 30119987 -146854153 + MER20 DNA MER1_type 45 219 0 1699 161 20 10 chrX 30120083 30120375 -146853765 - AluJb SINE Alu -17 295 1 1143 177 149 46 chrX 30120815 30121143 -146852997 + MLT1A1 LTR MaLR 4 365 0 22 0 0 0 chrX 30121638 30121660 -146852480 + AT_rich Low_complexity Low_complexity 1 22 0 42810 30 23 1 chrX 30121666 30127667 -146846473 - L1PA2 LINE L1 -2 6153 22 1599 303 82 42 chrX 30129239 30130132 -146844008 + L2 LINE L2 2147 3080 -233 451 301 114 88 chrX 30130445 30130709 -146843431 - MLT1J LTR MaLR 0 511 228 5439 136 21 9 chrX 30130709 30131938 -146842202 + L1PA16 LINE L1 4932 6166 0 451 301 114 88 chrX 30131938 30132148 -146841992 - MLT1J LTR MaLR -283 228 25 418 347 33 50 chrX 30132238 30132480 -146841660 + L2 LINE L2 2853 3090 -182 450 247 73 0 chrX 30132617 30132741 -146841399 - MIR SINE MIR -61 147 63 210 71 0 0 chrX 30132792 30132820 -146841320 + (T)n Simple_repeat Simple_repeat 1 28 0 1016 196 5 11 chrX 30132849 30133038 -146841102 + MER58A DNA MER1_type 37 224 0 299 268 72 31 chrX 30133269 30133366 -146840774 + MIR SINE MIR 151 251 -11 970 266 18 4 chrX 30135685 30135914 -146838226 + MIR SINE MIR 2 233 -29 1768 181 42 13 chrX 30136215 30136596 -146837544 - L1ME1 LINE L1 -5 6161 5770 217 103 0 0 chrX 30137138 30137167 -146836973 - L3 LINE CR1 -1281 296 268 1851 174 0 3 chrX 30138362 30138656 -146835484 - AluJb SINE Alu -19 293 1 2512 273 40 9 chrX 30138882 30140089 -146834051 + L1ME1 LINE L1 41 1333 -5063 2042 197 37 17 chrX 30140127 30140664 -146833476 + L1ME1 LINE L1 1919 2466 -3930 1677 238 4 84 chrX 30140646 30140770 -146833370 + L1ME1 LINE L1 5712 5844 -391 * 19301 34 1 11 chrX 30140770 30143896 -146830244 + L1PA4 LINE L1 3024 6152 -3 1677 238 4 84 chrX 30143896 30144333 -146829807 + L1ME1 LINE L1 5844 6228 -7 438 20 0 0 chrX 30144493 30144544 -146829596 + (CA)n Simple_repeat Simple_repeat 2 52 0 385 270 17 9 chrX 30146763 30146878 -146827262 + MIR SINE MIR 39 154 -108 840 227 25 0 chrX 30147063 30147226 -146826914 + MER5A DNA MER1_type 14 180 -9 1047 336 32 14 chrX 30149207 30149647 -146824493 - HERV16 LTR ERVL -4502 494 47 748 327 33 20 chrX 30149675 30150101 -146824039 - LTR16A LTR ERVL 0 450 1 290 227 67 8 chrX 30150130 30150297 -146823843 + L1M3 LINE L1 5313 5456 -712 2194 127 0 0 chrX 30150306 30150606 -146823534 + AluSx SINE Alu 1 300 -12 23 0 0 0 chrX 30150612 30150635 -146823505 + AT_rich Low_complexity Low_complexity 1 23 0 1008 254 41 43 chrX 30150761 30151226 -146822914 + L1ME LINE L1 4563 5026 -1120 839 173 101 12 chrX 30151242 30151410 -146822730 + MER3 DNA MER1_type 2 184 -25 338 297 8 23 chrX 30151482 30151610 -146822530 + MLT2F LTR ERVL 16 141 -522 548 140 0 5 chrX 30151619 30151733 -146822407 + MLT1E3 LTR MaLR 51 209 -445 281 254 0 0 chrX 30151741 30151796 -146822344 + Tigger5 DNA MER2_type 1 55 -2268 423 193 45 0 chrX 30151801 30151889 -146822251 + Tigger5 DNA MER2_type 2231 2322 -1 818 233 109 77 chrX 30152200 30152657 -146821483 + L1ME LINE L1 5102 5574 -596 453 19 0 0 chrX 30152668 30152722 -146821418 + (TG)n Simple_repeat Simple_repeat 2 55 0 839 237 14 40 chrX 30152722 30153000 -146821140 - L1M4 LINE L1 -1007 5139 4869 2971 103 9 14 chrX 30154564 30155000 -146819140 - MER57B LTR ERV1 0 434 1 182 299 47 47 chrX 30155175 30155282 -146818858 - MIR SINE MIR -10 252 146 286 277 10 0 chrX 30155480 30155581 -146818559 + L1 LINE L1 3876 3977 -2169 553 256 41 32 chrX 30155696 30155910 -146818230 - MIR SINE MIR -12 250 39 305 309 36 12 chrX 30155933 30156101 -146818039 + L1 LINE L1 4024 4195 -1951 1975 216 45 11 chrX 30156253 30156720 -146817420 - MER90 LTR ERV1 0 575 93 1719 227 139 13 chrX 30156726 30157202 -146816938 - MER34 LTR ERV1 -6 536 1 333 88 275 75 chrX 30157202 30157282 -146816858 - MER90 LTR ERV1 -479 96 1 442 317 31 0 chrX 30157350 30157511 -146816629 + L1ME3A LINE L1 5989 6154 -16 44 20 0 0 chrX 30157513 30157564 -146816576 + AT_rich Low_complexity Low_complexity 1 51 0 588 305 58 74 chrX 30157651 30157802 -146816338 - L2 LINE L2 -1145 2169 2017 2298 214 20 18 chrX 30157802 30158306 -146815834 + MLT1D LTR MaLR 1 505 0 588 305 58 74 chrX 30158306 30158329 -146815811 - L2 LINE L2 -1297 2017 1995 2086 129 7 0 chrX 30158329 30158632 -146815508 - AluSx SINE Alu -2 310 6 588 305 58 74 chrX 30158632 30158820 -146815320 - L2 LINE L2 -1319 1995 1812 195 379 15 0 chrX 30160721 30160787 -146813353 - L2 LINE L2 -5 3308 3242 249 313 84 67 chrX 30160827 30161006 -146813134 + L2 LINE L2 3083 3264 -8 22 0 0 0 chrX 30161033 30161055 -146813085 + AT_rich Low_complexity Low_complexity 1 22 0 2080 109 10 23 chrX 30163892 30164195 -146809945 - AluSg SINE Alu -11 299 1 1306 266 80 39 chrX 30164208 30164696 -146809444 - LTR33 LTR ERVL -13 508 1 331 263 44 9 chrX 30164898 30165012 -146809128 - L1M4 LINE L1 -3792 2852 2735 282 89 44 0 chrX 30165624 30165669 -146808471 + L1P2 LINE L1 5395 5441 -713 386 189 0 0 chrX 30166060 30166134 -146808006 - L1M4 LINE L1 -4590 2056 1983 4239 184 16 8 chrX 30166137 30166960 -146807180 - L1MB8 LINE L1 0 6178 5350 * 6714 217 32 27 chrX 30166957 30167453 -146806687 - L1M4 LINE L1 -4645 2001 1509 1918 181 0 0 chrX 30167453 30167763 -146806377 - AluJb SINE Alu -2 310 1 6714 217 32 27 chrX 30167763 30168393 -146805747 - L1M4 LINE L1 -5137 1509 883 2256 110 3 0 chrX 30168393 30168692 -146805448 + AluSx SINE Alu 1 300 -12 6714 217 32 27 chrX 30168692 30169535 -146804605 - L1M4 LINE L1 -5763 883 10 1111 278 33 36 chrX 30169841 30170079 -146804061 - LTR16C LTR ERVL 0 491 253 1995 121 68 6 chrX 30170079 30170402 -146803738 + MER61A LTR ERV1 1 343 0 1111 278 33 36 chrX 30170402 30170497 -146803643 - LTR16C LTR ERVL -238 253 159 382 297 104 15 chrX 30170639 30170908 -146803232 - HAL1b LINE L1 -570 778 486 1625 194 88 51 chrX 30170982 30171416 -146802724 + MLT1C LTR MaLR 18 467 0 1226 267 5 38 chrX 30172164 30172531 -146801609 + L1MB7 LINE L1 24 378 -6164 8439 231 39 31 chrX 30172540 30175132 -146799008 + L1MB7 LINE L1 3112 5724 -920 5807 111 9 3 chrX 30175133 30176007 -146798133 - Tigger3b DNA MER2_type -7 1224 346 2567 134 47 5 chrX 30176007 30176429 -146797711 + MSTB1 LTR MaLR 1 432 0 1991 160 8 47 chrX 30176430 30176793 -146797347 - Tigger3b DNA MER2_type -882 349 1 3789 184 30 45 chrX 30176815 30177751 -146796389 + L1MB7 LINE L1 5752 6673 -9 212 216 20 0 chrX 30178222 30178273 -146795867 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2433 89 0 0 chrX 30178940 30179253 -146794887 - AluSq SINE Alu 0 313 1 29 28 0 0 chrX 30179771 30179807 -146794333 + AT_rich Low_complexity Low_complexity 1 36 0 2154 114 3 0 chrX 30181265 30181554 -146792586 - AluSx SINE Alu -22 290 1 583 262 138 39 chrX 30181568 30181908 -146792232 + MLT1H LTR MaLR 118 521 -34 4927 41 3 3 chrX 30181908 30182499 -146791641 - LTR10C LTR ERV1 0 591 1 583 262 138 39 chrX 30182499 30182538 -146791602 + MLT1H LTR MaLR 521 555 0 2033 132 0 26 chrX 30183083 30183393 -146790747 - AluSx SINE Alu -10 302 1 541 247 60 27 chrX 30183474 30183624 -146790516 + MIR SINE MIR 26 180 -82 480 262 163 0 chrX 30183705 30183846 -146790294 + MIR3 SINE MIR 42 205 -3 430 109 16 0 chrX 30184550 30184614 -146789526 + MER31B LTR ERV1 3 67 -399 213 94 0 0 chrX 30184640 30184672 -146789468 + (A)n Simple_repeat Simple_repeat 1 32 0 255 170 0 0 chrX 30184675 30184722 -146789418 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1741 158 20 20 chrX 30185666 30185970 -146788170 - AluJo SINE Alu -8 304 1 327 93 0 0 chrX 30185990 30186033 -146788107 - MLT2B1 LTR ERVL 0 553 511 1543 207 43 62 chrX 30186111 30186587 -146787553 - MLT2B1 LTR ERVL -43 472 8 363 316 78 17 chrX 30186615 30186963 -146787177 + HAL1 LINE L1 820 1188 -1319 1702 171 14 10 chrX 30187090 30187383 -146786757 + AluJo SINE Alu 9 302 -10 252 271 39 98 chrX 30187660 30187897 -146786243 - L1ME LINE L1 -239 5882 5657 196 342 0 0 chrX 30188606 30188682 -146785458 - MIR SINE MIR -125 137 62 1507 220 85 11 chrX 30188724 30189087 -146785053 + MLT1B LTR MaLR 1 390 0 205 381 34 8 chrX 30189092 30189210 -146784930 + MIR3 SINE MIR 46 166 -42 25 0 0 0 chrX 30189327 30189352 -146784788 + AT_rich Low_complexity Low_complexity 1 25 0 2014 203 59 25 chrX 30189525 30189998 -146784142 + MLT1D LTR MaLR 1 489 -16 219 381 39 7 chrX 30190381 30190536 -146783604 - L2 LINE L2 -383 2931 2772 1074 241 80 62 chrX 30190823 30191308 -146782832 + PABL_B LTR ERV1 174 667 0 729 249 68 110 chrX 30191314 30191815 -146782325 - L2 LINE L2 -564 2750 2271 217 159 23 0 chrX 30191985 30192029 -146782111 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 322 294 85 55 chrX 30192835 30193054 -146781086 - MIR SINE MIR 0 262 21 396 0 0 0 chrX 30193543 30193587 -146780553 + (TG)n Simple_repeat Simple_repeat 1 44 0 4072 117 19 51 chrX 30193587 30194270 -146779870 + LTR8 LTR ERV1 31 691 0 1540 162 23 118 chrX 30194364 30194845 -146779295 - LTR49 LTR ERV1 -160 435 1 2191 112 0 3 chrX 30194897 30195200 -146778940 + AluSx SINE Alu 1 302 -10 438 252 37 44 chrX 30195529 30195664 -146778476 - L2 LINE L2 0 3313 3180 4321 155 100 53 chrX 30196763 30197671 -146776469 + LTR28 LTR ERV1 1 951 -69 379 274 73 31 chrX 30197843 30198102 -146776038 - L1M4 LINE L1 -1487 4659 4390 25 31 0 0 chrX 30198307 30198339 -146775801 + AT_rich Low_complexity Low_complexity 1 32 0 357 246 85 23 chrX 30198507 30198637 -146775503 + L1ME2 LINE L1 5304 5441 -2367 25 75 0 0 chrX 30198637 30198690 -146775450 + AT_rich Low_complexity Low_complexity 1 53 0 1336 158 187 45 chrX 30198693 30199067 -146775073 + LTR49 LTR ERV1 9 435 -160 36082 89 11 29 chrX 30199081 30205292 -146768848 + L1PA6 LINE L1 11 6150 -4 2355 90 0 0 chrX 30205317 30205616 -146768524 - AluY SINE Alu -12 299 1 666 175 50 19 chrX 30205616 30205776 -146768364 + LTR48 LTR ERV1 623 787 0 5074 186 94 128 chrX 30205778 30206913 -146767227 + LTR48-int LTR ERV1 1 1173 -3763 354 219 14 14 chrX 30206913 30206986 -146767154 + tRNA-Glu-GAG tRNA tRNA 3 75 0 5074 186 94 128 chrX 30206986 30207570 -146766570 + LTR48-int LTR ERV1 1173 357 -4579 2004 157 0 0 chrX 30207570 30207882 -146766258 - AluSx SINE Alu 0 312 1 5074 186 94 128 chrX 30207882 30208126 -146766014 + LTR48-int LTR ERV1 356 607 -4329 6667 163 20 6 chrX 30208267 30210519 -146763621 + L1PB1 LINE L1 3868 6151 0 1179 170 37 0 chrX 30210542 30210783 -146763357 + L1ME2 LINE L1 5691 5940 -224 396 236 193 19 chrX 30210879 30211015 -146763125 + L1ME2 LINE L1 5937 6106 -58 2258 105 3 0 chrX 30211015 30211311 -146762829 + AluSp SINE Alu 1 297 -16 396 236 193 19 chrX 30211311 30211335 -146762805 + L1ME2 LINE L1 6106 6125 -39 336 24 0 0 chrX 30211335 30211376 -146762764 + (TG)n Simple_repeat Simple_repeat 1 41 0 2867 94 29 0 chrX 30211398 30211811 -146762329 + L1PA13 LINE L1 5719 6143 -20 475 170 228 18 chrX 30211856 30212027 -146762113 - Charlie1 DNA MER1_type -112 2649 2443 22 35 0 0 chrX 30212405 30212434 -146761706 + AT_rich Low_complexity Low_complexity 1 29 0 711 248 0 7 chrX 30213244 30213397 -146760743 - FRAM SINE Alu -23 153 2 206 340 32 21 chrX 30213707 30213801 -146760339 + MIR SINE MIR 168 262 0 227 325 0 0 chrX 30213826 30213906 -146760234 - MIR SINE MIR -108 154 75 261 201 291 15 chrX 30214192 30214326 -146759814 - MIR3 SINE MIR -10 198 28 29 47 0 0 chrX 30214434 30214477 -146759663 + AT_rich Low_complexity Low_complexity 1 43 0 446 325 121 51 chrX 30214518 30214902 -146759238 - L1MD2 LINE L1 -296 5825 5527 1399 164 174 0 chrX 30214902 30215195 -146758945 + MER2 DNA MER2_type 1 344 0 446 325 121 51 chrX 30215195 30215486 -146758654 - L1MD2 LINE L1 -594 5527 5258 229 128 35 23 chrX 30215784 30215870 -146758270 + (TA)n Simple_repeat Simple_repeat 2 88 0 26 50 0 0 chrX 30216115 30216155 -146757985 + AT_rich Low_complexity Low_complexity 1 40 0 192 254 0 0 chrX 30216542 30216601 -146757539 + (TATG)n Simple_repeat Simple_repeat 2 60 0 388 327 115 10 chrX 30216727 30217118 -146757022 + L1ME LINE L1 5379 5810 -311 239 242 0 0 chrX 30217131 30217197 -146756943 + (TA)n Simple_repeat Simple_repeat 1 66 0 3940 196 56 81 chrX 30217361 30218483 -146755657 + L1MB7 LINE L1 3 1096 -5446 633 299 49 7 chrX 30218490 30218798 -146755342 + L1MB7 LINE L1 3600 3920 -2724 1373 234 113 85 chrX 30218800 30219316 -146754824 - MER39 LTR ERV1 0 707 7 6247 196 52 44 chrX 30219321 30220973 -146753167 + L1MB7 LINE L1 3918 5582 -1062 1880 189 35 27 chrX 30220973 30221375 -146752765 - MLT1B LTR MaLR 0 426 1 2245 189 48 22 chrX 30221464 30221961 -146752179 + L1MB7 LINE L1 6160 6669 -13 21 0 0 0 chrX 30222156 30222177 -146751963 + AT_rich Low_complexity Low_complexity 1 21 0 1191 208 11 30 chrX 30222296 30222561 -146751579 - MLT2B1 LTR ERVL 0 520 261 414 341 58 13 chrX 30222805 30223113 -146751027 - L1MD2 LINE L1 -1100 5046 4725 2198 108 0 3 chrX 30223194 30223489 -146750651 - AluSq SINE Alu -19 294 1 729 197 0 0 chrX 30223595 30223717 -146750423 + FLAM_A SINE Alu 1 122 -11 22 0 0 0 chrX 30223822 30223844 -146750296 + AT_rich Low_complexity Low_complexity 1 22 0 7226 39 0 4 chrX 30224015 30225001 -146749139 - L1PA5 LINE L1 -9 6145 5158 26 0 0 0 chrX 30225050 30225076 -146749064 + AT_rich Low_complexity Low_complexity 1 26 0 359 265 68 74 chrX 30225233 30225644 -146748496 + HAL1b LINE L1 1193 1326 -22 23 0 0 0 chrX 30225841 30225864 -146748276 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 30225883 30225904 -146748236 + AT_rich Low_complexity Low_complexity 1 21 0 1169 140 0 0 chrX 30276016 30276187 -146697953 + AluSg/x SINE Alu 131 301 -11 2174 104 13 7 chrX 30276191 30276489 -146697651 + AluSp SINE Alu 1 300 -13 772 246 88 126 chrX 30276759 30276881 -146697259 - MLT1J LTR MaLR 0 511 386 2474 64 7 0 chrX 30276881 30277177 -146696963 + AluY SINE Alu 1 298 -13 772 246 88 126 chrX 30277177 30277579 -146696561 - MLT1J LTR MaLR -125 386 7 351 210 57 89 chrX 30277777 30277934 -146696206 - MIR SINE MIR -41 221 70 1066 165 21 16 chrX 30278620 30278808 -146695332 + MER5A DNA MER1_type 1 189 0 412 321 6 30 chrX 30279899 30280067 -146694073 + MIR3 SINE MIR 15 178 -30 250 286 32 63 chrX 30280109 30280235 -146693905 + LTR16C LTR ERVL 188 309 -182 180 97 0 0 chrX 30280357 30280388 -146693752 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2208 102 0 0 chrX 30280390 30280673 -146693467 - AluSx SINE Alu -29 283 1 1106 242 25 43 chrX 30281018 30281340 -146692800 + LTR16C LTR ERVL 161 476 -15 1450 166 22 27 chrX 30282030 30282335 -146691805 + MER61B LTR ERV1 1 396 -28 3268 128 29 37 chrX 30282344 30282702 -146691438 + MER61B-int LTR ERV1 1 360 -4857 2170 130 0 3 chrX 30282702 30283001 -146691139 - AluSx SINE Alu -14 298 1 3268 128 29 37 chrX 30283001 30283406 -146690734 + MER61B-int LTR ERV1 360 840 -4377 28832 81 13 7 chrX 30283406 30283484 -146690656 + MER61B-int LTR ERV1 958 1034 -4183 2424 86 0 0 chrX 30283484 30283785 -146690355 - AluY SINE Alu -10 301 1 28832 81 13 7 chrX 30283785 30287899 -146686241 + MER61B-int LTR ERV1 1034 5217 0 1493 158 28 12 chrX 30287899 30288198 -146685942 + MER61B LTR ERV1 1 396 -28 2604 83 26 9 chrX 30288240 30288589 -146685551 + THE1A LTR MaLR 1 355 0 278 212 10 131 chrX 30289986 30290085 -146684055 - L2 LINE L2 -2 3311 3225 1743 216 41 51 chrX 30290092 30290462 -146683678 - MER31A LTR ERV1 0 485 120 5385 78 5 6 chrX 30290462 30291130 -146683010 + PABL_B LTR ERV1 1 667 0 1743 216 41 51 chrX 30291130 30291249 -146682891 - MER31A LTR ERV1 -365 120 1 27101 108 47 53 chrX 30291283 30292152 -146681988 - MER31A-int LTR ERV1 -151 4785 3912 2486 182 57 51 chrX 30292152 30292616 -146681524 + MLT2B2 LTR ERVL 3 472 -43 369 0 0 0 chrX 30292616 30292657 -146681483 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 2486 182 57 51 chrX 30292657 30292702 -146681438 + MLT2B2 LTR ERVL 472 515 0 27101 108 47 53 chrX 30292702 30295625 -146678515 - MER31A-int LTR ERV1 -1024 3912 1022 1135 87 0 7 chrX 30295625 30295774 -146678366 + L1PA10 LINE L1 6019 6166 -2 27101 108 47 53 chrX 30295774 30296592 -146677548 - MER31A-int LTR ERV1 -3914 1022 201 372 173 0 53 chrX 30296651 30296726 -146677414 - MER31A-int LTR ERV1 -4669 267 197 436 145 0 0 chrX 30296733 30296802 -146677338 - Alu SINE Alu 0 312 244 1361 39 0 0 chrX 30296864 30297020 -146677120 - MER31A-int LTR ERV1 -4763 173 18 1626 190 138 41 chrX 30297073 30297515 -146676625 - MER31A LTR ERV1 0 485 1 198 0 0 0 chrX 30297720 30297742 -146676398 + (A)n Simple_repeat Simple_repeat 1 22 0 214 342 136 41 chrX 30297742 30298251 -146675889 - L2 LINE L2 -375 2939 2383 317 259 129 0 chrX 30298355 30298471 -146675669 + MER112 DNA MER1_type 3 133 -127 417 396 0 0 chrX 30298538 30298697 -146675443 + (CGG)n Simple_repeat Simple_repeat 2 160 0 210 139 0 0 chrX 30301078 30301114 -146673026 + (TG)n Simple_repeat Simple_repeat 1 36 0 28 0 0 0 chrX 30301826 30301854 -146672286 + AT_rich Low_complexity Low_complexity 1 28 0 279 274 48 65 chrX 30302212 30302336 -146671804 - L2 LINE L2 -556 2758 2637 818 203 0 59 chrX 30302448 30302610 -146671530 + MER5A DNA MER1_type 14 165 -24 2314 103 0 0 chrX 30302610 30302911 -146671229 - AluSx SINE Alu -11 301 1 818 203 0 59 chrX 30302911 30302935 -146671205 + MER5A DNA MER1_type 165 189 0 321 26 0 0 chrX 30302996 30303034 -146671106 + (TG)n Simple_repeat Simple_repeat 1 38 0 574 316 68 24 chrX 30303425 30303675 -146670465 + MIR SINE MIR 2 262 0 222 316 133 20 chrX 30303745 30303843 -146670297 + L2 LINE L2 3137 3245 -27 296 286 0 13 chrX 30304363 30304440 -146669700 - MIR3 SINE MIR -5 203 128 512 246 56 7 chrX 30304870 30305012 -146669128 + MIR SINE MIR 110 258 -4 5359 70 17 6 chrX 30305166 30305823 -146668317 + PABL_B LTR ERV1 4 667 0 3316 113 36 2 chrX 30305928 30306398 -146667742 - LTR19A LTR ERV1 0 486 1 59953 73 6 10 chrX 30306398 30313845 -146660295 - HERVFH19I LTR ERV1 0 7719 304 252 0 0 0 chrX 30313845 30313873 -146660267 + (GA)n Simple_repeat Simple_repeat 1 28 0 59953 73 6 10 chrX 30313873 30314176 -146659964 - HERVFH19I LTR ERV1 -7415 304 1 3487 96 36 2 chrX 30314176 30314646 -146659494 - LTR19A LTR ERV1 0 486 1 1580 234 22 25 chrX 30314646 30315052 -146659088 + LTR16A LTR ERVL 28 444 -6 24 0 0 0 chrX 30316089 30316113 -146658027 + AT_rich Low_complexity Low_complexity 1 24 0 203 345 74 34 chrX 30316810 30316958 -146657182 + MIR SINE MIR 1 154 -108 434 262 133 52 chrX 30316978 30317211 -146656929 - MIR SINE MIR 0 262 11 722 303 123 24 chrX 30318401 30319163 -146654977 + HAL1 LINE L1 971 1808 -699 201 39 0 0 chrX 30319823 30319849 -146654291 + (CA)n Simple_repeat Simple_repeat 2 27 0 257 192 55 0 chrX 30321922 30321995 -146652145 + LTR16A1 LTR ERVL 49 125 -332 803 268 0 0 chrX 30322030 30322220 -146651920 - MER58A DNA MER1_type -16 208 19 868 275 27 45 chrX 30322229 30322560 -146651580 + LTR16A LTR ERVL 120 444 -6 224 146 0 21 chrX 30322931 30322979 -146651161 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 1514 261 29 11 chrX 30323971 30324420 -146649720 - LTR16C LTR ERVL -34 457 1 2313 96 3 0 chrX 30324466 30324758 -146649382 - AluSx SINE Alu -19 293 1 1110 237 137 34 chrX 30324809 30325319 -146648821 + MLT1F1 LTR MaLR 1 564 -3 1689 54 19 0 chrX 30325414 30325619 -146648521 + AluY SINE Alu 83 291 -20 1075 239 61 18 chrX 30326018 30326275 -146647865 + MER2 DNA MER2_type 1 277 -68 5225 91 9 4 chrX 30326275 30327046 -146647094 - L1MA2 LINE L1 0 6304 5530 1075 239 61 18 chrX 30327046 30327118 -146647022 + MER2 DNA MER2_type 277 344 -1 2563 145 34 2 chrX 30328438 30328851 -146645289 - MSTB LTR MaLR 0 426 1 1159 259 58 48 chrX 30329037 30329434 -146644706 - L2 LINE L2 -1 3312 2912 1717 156 0 79 chrX 30330586 30330914 -146643226 - AluSq SINE Alu -11 302 1 902 241 71 5 chrX 30331369 30331593 -146642547 + MIR SINE MIR 3 241 -21 1187 309 16 14 chrX 30332064 30332498 -146641642 + LTR16A LTR ERVL 16 450 0 569 228 82 16 chrX 30334062 30334262 -146639878 + MLT1H1 LTR MaLR 304 555 0 568 274 116 0 chrX 30334334 30334498 -146639642 + MIR SINE MIR 29 211 -51 425 313 28 0 chrX 30334652 30334796 -146639344 + MIR SINE MIR 106 253 -9 489 326 4 19 chrX 30336009 30336273 -146637867 - MIR SINE MIR -1 261 2 1987 143 0 3 chrX 30336554 30336847 -146637293 - AluSp SINE Alu -8 305 14 1497 188 133 86 chrX 30336879 30337411 -146636729 + MLT1F1 LTR MaLR 12 567 0 21 36 0 0 chrX 30338386 30338414 -146635726 + AT_rich Low_complexity Low_complexity 1 28 0 5871 98 16 0 chrX 30338414 30339338 -146634802 - L1PA15 LINE L1 0 6165 5213 417 256 65 36 chrX 30339349 30339517 -146634623 - MER5A DNA MER1_type -6 183 11 233 313 0 0 chrX 30339752 30339819 -146634321 + L2 LINE L2 3204 3270 -2 467 217 174 0 chrX 30341200 30341245 -146632895 - L1MA10 LINE L1 -3 6331 6287 3512 218 69 21 chrX 30341245 30342950 -146631190 - L1ME1 LINE L1 -44 6191 4407 1582 191 188 0 chrX 30342950 30343301 -146630839 - MER47B DNA MER2_type 0 418 2 1082 247 6 18 chrX 30343302 30343634 -146630506 - L1ME1 LINE L1 -1807 4408 4081 1743 196 7 0 chrX 30343701 30344002 -146630138 + AluJo SINE Alu 1 303 -9 1342 224 105 63 chrX 30344016 30344467 -146629673 - MLT1E LTR MaLR -24 551 91 2128 110 40 0 chrX 30344467 30344767 -146629373 + AluSx SINE Alu 1 312 0 1342 224 105 63 chrX 30344767 30344862 -146629278 - MLT1E LTR MaLR -484 91 1 6289 244 49 44 chrX 30344862 30346070 -146628070 - L1ME1 LINE L1 -2139 4076 2875 2853 10 0 0 chrX 30346070 30346381 -146627759 - AluYa5 SINE Alu 0 311 1 6289 244 49 44 chrX 30346381 30346688 -146627452 - L1ME1 LINE L1 -3340 2875 2571 2112 112 0 14 chrX 30346688 30347003 -146627137 + AluSx SINE Alu 1 311 0 6289 244 49 44 chrX 30347003 30348824 -146625316 - L1ME1 LINE L1 -3644 2571 763 2871 70 8 3 chrX 30348824 30349207 -146624933 - L1PA13 LINE L1 -11 6152 5768 6289 244 49 44 chrX 30349207 30349938 -146624202 - L1ME1 LINE L1 -5452 763 37 1654 184 93 37 chrX 30350373 30350748 -146623392 - MSTD LTR MaLR 0 396 1 22 88 0 0 chrX 30351784 30351841 -146622299 + AT_rich Low_complexity Low_complexity 1 57 0 553 292 74 20 chrX 30351931 30352321 -146621819 - L1ME4a LINE L1 -175 5946 5536 882 259 131 40 chrX 30353170 30353247 -146620893 + MLT1H LTR MaLR 1 70 -479 17510 44 2 0 chrX 30353247 30356187 -146617953 + L1PA5 LINE L1 3210 6152 -2 882 259 131 40 chrX 30356187 30356514 -146617626 + MLT1H LTR MaLR 70 442 -107 21 36 0 0 chrX 30357689 30357717 -146616423 + AT_rich Low_complexity Low_complexity 1 28 0 1615 142 98 41 chrX 30357776 30358094 -146616046 - MER1B DNA MER1_type -1 336 1 184 320 0 0 chrX 30358269 30358319 -146615821 + L2 LINE L2 3208 3257 -15 207 0 0 0 chrX 30359145 30359168 -146614972 + (TC)n Simple_repeat Simple_repeat 2 24 0 219 36 0 0 chrX 30359170 30359198 -146614942 + (CA)n Simple_repeat Simple_repeat 1 28 0 288 339 149 33 chrX 30360209 30360451 -146613689 - L2 LINE L2 -2 3270 3001 207 0 0 0 chrX 30361992 30362015 -146612125 + (A)n Simple_repeat Simple_repeat 1 23 0 407 347 20 7 chrX 30362116 30362266 -146611874 - L3 LINE CR1 -10 1567 1416 193 313 75 68 chrX 30362328 30362593 -146611547 + L2 LINE L2 2709 2975 -339 308 186 114 0 chrX 30362719 30362789 -146611351 + L2 LINE L2 3236 3313 0 446 256 169 5 chrX 30362912 30363215 -146610925 - LTR33 LTR ERVL -12 509 110 1229 334 55 28 chrX 30363296 30363913 -146610227 - L3 LINE CR1 -344 1233 600 315 226 21 21 chrX 30364012 30364105 -146610035 + MER103 DNA DNA 1 93 -73 588 275 65 44 chrX 30364247 30364476 -146609664 + MIR SINE MIR 29 262 0 308 300 27 18 chrX 30364663 30364773 -146609367 + L1ME LINE L1 5276 5386 -856 535 303 6 12 chrX 30364889 30365051 -146609089 - MIR SINE MIR -1 261 101 296 235 15 0 chrX 30365065 30365133 -146609007 + L1ME LINE L1 5557 5625 -496 1171 277 73 15 chrX 30365149 30365560 -146608580 + LTR16A LTR ERVL 16 450 0 544 263 67 50 chrX 30365703 30366061 -146608079 + L1MCc LINE L1 21 384 -6039 1578 243 57 21 chrX 30366186 30367134 -146607006 + L1MCc LINE L1 814 1910 -4851 745 261 70 7 chrX 30367147 30367434 -146606706 - MLT1D LTR MaLR -2 503 199 1083 256 46 46 chrX 30367443 30367974 -146606166 + L1MCc LINE L1 2658 3188 -3753 2404 92 0 13 chrX 30367974 30368289 -146605851 + AluSq SINE Alu 1 311 -2 1083 256 46 46 chrX 30368289 30368362 -146605778 + L1MCc LINE L1 3188 3260 -3681 1977 172 42 3 chrX 30368362 30368717 -146605423 + MER93b LTR ERV1 5 373 0 1083 256 46 46 chrX 30368717 30368827 -146605313 + L1MCc LINE L1 3260 3336 -3605 998 205 80 86 chrX 30368832 30369218 -146604922 + L1MD3 LINE L1 6801 7184 -811 566 240 0 0 chrX 30369233 30369358 -146604782 + MLT1F1 LTR MaLR 1 125 -442 2899 173 39 2 chrX 30369359 30369920 -146604220 + L1MD3 LINE L1 7400 7981 -14 2082 93 23 33 chrX 30369922 30370222 -146603918 - AluY SINE Alu -14 297 1 283 250 42 10 chrX 30370260 30370356 -146603784 + MLT1J2 LTR MaLR 344 442 -8 27 49 0 0 chrX 30370538 30370579 -146603561 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrX 30371224 30371246 -146602894 + AT_rich Low_complexity Low_complexity 1 22 0 275 289 58 10 chrX 30371293 30371397 -146602743 - MIR SINE MIR -141 121 13 21 0 0 0 chrX 30371587 30371608 -146602532 + AT_rich Low_complexity Low_complexity 1 21 0 567 289 102 49 chrX 30371661 30371907 -146602233 - MIR SINE MIR -2 260 2 904 252 29 0 chrX 30372783 30372993 -146601147 + MIR SINE MIR 43 258 -4 1893 146 7 3 chrX 30373266 30373554 -146600586 + AluJb SINE Alu 1 289 -23 225 308 0 26 chrX 30373631 30373709 -146600431 - L2 LINE L2 -61 3252 3177 555 268 252 4 chrX 30373717 30373971 -146600169 + L2 LINE L2 2827 3143 -170 3630 259 40 14 chrX 30373998 30374967 -146599173 - L2 LINE L2 -508 2806 1813 1178 281 97 21 chrX 30374967 30375402 -146598738 - L2 LINE L2 -2846 468 1 797 167 0 8 chrX 30375762 30375888 -146598252 - FLAM_A SINE Alu -8 125 1 186 133 0 0 chrX 30376589 30376619 -146597521 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1199 235 55 48 chrX 30376910 30377344 -146596796 - MLT1J1 LTR MaLR -2 444 8 233 155 17 0 chrX 30378675 30378733 -146595407 + GA-rich Low_complexity Low_complexity 2 60 0 252 0 0 0 chrX 30380079 30380107 -146594033 + (T)n Simple_repeat Simple_repeat 1 28 0 1179 306 47 10 chrX 30380787 30381192 -146592948 + LTR16C LTR ERVL 71 490 -1 537 252 96 28 chrX 30381584 30381879 -146592261 + LTR33 LTR ERVL 173 521 0 369 277 6 77 chrX 30381879 30382057 -146592083 + MIR SINE MIR 25 189 -73 1207 176 0 0 chrX 30382472 30382660 -146591480 + MER5A DNA MER1_type 2 189 0 1219 228 42 9 chrX 30382832 30383266 -146590874 - MLT1E LTR MaLR 0 593 50 1211 222 51 28 chrX 30383432 30383888 -146590252 - MLT1E-int LTR MaLR -766 605 15 979 251 70 0 chrX 30383922 30384165 -146589975 - MLT1E LTR MaLR 0 593 334 926 259 56 0 chrX 30384173 30384389 -146589751 - MLT1E LTR MaLR -365 228 1 406 355 35 12 chrX 30384802 30384974 -146589166 + MER5B DNA MER1_type 1 176 -2 320 152 15 0 chrX 30385176 30385242 -146588898 + CT-rich Low_complexity Low_complexity 3 69 0 1673 203 42 97 chrX 30386009 30386613 -146587527 - L1ME1 LINE L1 -7 6228 5661 4843 104 5 36 chrX 30386613 30387366 -146586774 + L1PB3 LINE L1 5420 6149 -5 1673 203 42 97 chrX 30387366 30387422 -146586718 - L1ME1 LINE L1 -574 5661 5604 346 273 34 0 chrX 30387425 30387513 -146586627 + L1MC4 LINE L1 6612 6702 -1340 293 0 27 0 chrX 30387533 30387570 -146586570 + (GA)n Simple_repeat Simple_repeat 2 39 0 1667 156 0 56 chrX 30387596 30387884 -146586256 - AluJo SINE Alu -40 272 1 370 176 8 131 chrX 30387886 30388026 -146586114 - L1ME1 LINE L1 -682 5553 5437 1260 204 70 77 chrX 30388026 30388599 -146585541 - L1ME1 LINE L1 -2539 3676 3108 1024 262 0 7 chrX 30388598 30388873 -146585267 - L1ME1 LINE L1 -6086 310 38 * 408 245 86 36 chrX 30389184 30389323 -146584817 - MLT1J LTR MaLR -110 401 256 312 70 0 0 chrX 30389978 30390021 -146584119 + (TC)n Simple_repeat Simple_repeat 1 43 0 299 256 42 3 chrX 30390347 30390459 -146583681 + MIR SINE MIR 37 157 -63 214 331 45 11 chrX 30390500 30390616 -146583524 + MIR SINE MIR 10 137 -71 194 250 0 91 chrX 30390597 30390685 -146583455 + L2 LINE L2 3229 3308 -5 * 309 26 0 0 chrX 30391702 30391740 -146582400 + (TA)n Simple_repeat Simple_repeat 1 38 0 252 0 0 0 chrX 30391739 30391767 -146582373 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 583 262 73 31 chrX 30392195 30392463 -146581677 + MLT1H LTR MaLR 14 333 -216 342 189 31 1 chrX 30392539 30392627 -146581513 + MLT1F LTR MaLR 453 531 -11 987 243 67 80 chrX 30392888 30393414 -146580726 + LTR33 LTR ERVL 3 521 0 277 195 115 23 chrX 30393657 30393744 -146580396 + MIR SINE MIR 149 243 -19 592 133 0 0 chrX 30394611 30394701 -146579439 + MER39 LTR ERV1 1 90 -617 1378 155 34 21 chrX 30394732 30395128 -146579012 + LTR32 LTR ERVL 14 471 0 2589 118 12 16 chrX 30395129 30395553 -146578587 + MER39 LTR ERV1 286 707 0 1399 198 136 9 chrX 30397293 30397743 -146576397 - MER69 DNA AcHobo -10 2516 2010 703 273 115 18 chrX 30397728 30398006 -146576134 - MER69 DNA AcHobo -1944 582 278 * 1176 216 100 43 chrX 30398006 30398171 -146575969 + MLT1D LTR MaLR 1 155 -350 2431 80 3 0 chrX 30398171 30398470 -146575670 - AluSp SINE Alu -13 300 1 1176 216 100 43 chrX 30398470 30398675 -146575465 + MLT1D LTR MaLR 155 392 -113 362 292 10 10 chrX 30398687 30398783 -146575357 - MIR SINE MIR -75 133 38 222 400 35 9 chrX 30399361 30399476 -146574664 + L2 LINE L2 3136 3253 -19 255 322 84 42 chrX 30399482 30399625 -146574515 + MIR SINE MIR 20 168 -94 833 289 44 4 chrX 30400300 30400746 -146573394 + L1MDb LINE L1 7 549 -5860 2214 216 40 12 chrX 30400747 30401368 -146572772 + L1MD2 LINE L1 5620 6242 0 404 266 0 71 chrX 30401982 30402087 -146572053 + MIR SINE MIR 119 211 -51 1883 163 47 24 chrX 30402087 30402468 -146571672 + MLT1B LTR MaLR 1 390 0 404 266 0 71 chrX 30402468 30402516 -146571624 + MIR SINE MIR 211 261 -1 1784 192 21 0 chrX 30403390 30403723 -146570417 - MER58B DNA MER1_type -1 340 1 783 293 98 0 chrX 30403975 30404221 -146569919 + L2 LINE L2 2510 2779 -535 1478 270 23 3 chrX 30404260 30404649 -146569491 - LTR16A LTR ERVL -38 412 16 1343 265 58 44 chrX 30404664 30404826 -146569314 + L2 LINE L2 2828 2986 -327 2562 70 0 0 chrX 30404826 30405128 -146569012 - AluY SINE Alu -9 302 1 1343 265 58 44 chrX 30405128 30405444 -146568696 + L2 LINE L2 2986 3313 0 289 193 0 18 chrX 30406699 30406756 -146567384 - LTR67 LTR ERVL -400 157 102 226 298 106 0 chrX 30406933 30407027 -146567113 - L2 LINE L2 0 3272 3169 218 365 0 0 chrX 30407640 30407725 -146566415 - MIR SINE MIR -92 170 86 286 292 28 0 chrX 30408023 30408095 -146566045 + (CATG)n Simple_repeat Simple_repeat 1 74 0 2896 143 0 19 chrX 30408282 30408763 -146565377 - L1PA16 LINE L1 -6 6160 5689 21 0 0 0 chrX 30409084 30409105 -146565035 + AT_rich Low_complexity Low_complexity 1 21 0 208 340 0 0 chrX 30409430 30409477 -146564663 + L2 LINE L2 3138 3184 -88 425 253 65 85 chrX 30410487 30410938 -146563202 - MLT1H LTR MaLR 0 595 114 256 273 20 50 chrX 30411185 30411284 -146562856 + MIR SINE MIR 83 178 -84 31 0 0 0 chrX 30612470 30612501 -146361639 + AT_rich Low_complexity Low_complexity 1 31 0 1851 133 29 48 chrX 30612860 30613236 -146360904 + THE1C LTR MaLR 7 375 0 2193 131 78 0 chrX 30613595 30613955 -146360185 - MLT1B LTR MaLR 0 390 3 358 200 15 0 chrX 30614022 30614087 -146360053 + L2 LINE L2 3248 3313 0 371 214 62 35 chrX 30614607 30614752 -146359388 - L1ME4a LINE L1 -5 6116 5968 6378 36 0 1 chrX 30614911 30615669 -146358471 + L1PA5 LINE L1 5392 6148 -6 493 282 81 35 chrX 30615757 30616126 -146358014 - L1ME4a LINE L1 -345 5776 5391 21 0 0 0 chrX 30616194 30616215 -146357925 + AT_rich Low_complexity Low_complexity 1 21 0 2453 78 0 3 chrX 30616388 30616696 -146357444 - AluY SINE Alu -4 307 1 1314 181 26 26 chrX 30616726 30616992 -146357148 + MSTD LTR MaLR 3 268 -128 933 215 188 27 chrX 30616988 30617286 -146356854 - MLT1G3 LTR MaLR -15 515 170 * 225 0 0 0 chrX 30617296 30617321 -146356819 + (GA)n Simple_repeat Simple_repeat 1 25 0 2854 179 42 31 chrX 30617737 30618231 -146355909 + MLT2B3 LTR ERVL 2 504 -50 231 36 0 0 chrX 30618231 30618259 -146355881 + (TC)n Simple_repeat Simple_repeat 2 29 0 2854 179 42 31 chrX 30618259 30618311 -146355829 + MLT2B3 LTR ERVL 504 554 0 523 286 33 24 chrX 30618446 30618659 -146355481 + LTR16A1 LTR ERVL 157 371 -86 806 169 114 45 chrX 30618660 30618861 -146355279 - AluJb SINE Alu -11 301 87 289 288 68 46 chrX 30619258 30619609 -146354531 + L1M4 LINE L1 3595 3953 -2193 657 320 76 25 chrX 30619935 30620369 -146353771 + L1M4 LINE L1 4378 4833 -1313 22 0 0 0 chrX 30620417 30620439 -146353701 + AT_rich Low_complexity Low_complexity 1 22 0 1001 162 22 68 chrX 30620548 30620604 -146353536 - MLT2B3 LTR ERVL 0 554 497 216 0 0 0 chrX 30620604 30620628 -146353512 + (GA)n Simple_repeat Simple_repeat 2 25 0 1001 162 22 68 chrX 30620628 30620793 -146353347 - MLT2B3 LTR ERVL -57 497 343 1777 152 4 0 chrX 30620953 30621216 -146352924 + AluSx SINE Alu 1 264 -48 278 171 0 0 chrX 30621216 30621257 -146352883 + AluJ/FLAM SINE Alu 17 57 -245 249 294 265 10 chrX 30621536 30621638 -146352502 - MIR3 SINE MIR -51 157 30 185 259 154 86 chrX 30621692 30621854 -146352286 - L3b LINE CR1 -163 1420 1248 978 95 0 14 chrX 30623013 30623160 -146350980 - L1PA16 LINE L1 -1 6165 6021 400 218 98 30 chrX 30623376 30623509 -146350631 - MIR SINE MIR -77 185 44 * 430 311 20 20 chrX 30623508 30623656 -146350484 + MIR SINE MIR 63 210 -52 * 565 330 165 17 chrX 30623634 30624040 -146350100 - L3 LINE CR1 -935 642 177 2059 144 0 3 chrX 30624115 30624427 -146349713 + AluSx SINE Alu 1 311 -1 2603 145 21 5 chrX 30624476 30624897 -146349243 + MSTA LTR MaLR 1 428 0 336 290 109 7 chrX 30624974 30625112 -146349028 - MIR SINE MIR -1 261 110 195 114 0 0 chrX 30625136 30625171 -146348969 + (A)n Simple_repeat Simple_repeat 1 35 0 25 90 0 0 chrX 30625660 30625727 -146348413 + AT_rich Low_complexity Low_complexity 1 67 0 32 0 0 0 chrX 30625900 30625932 -146348208 + AT_rich Low_complexity Low_complexity 1 32 0 2329 127 0 6 chrX 30625958 30626319 -146347821 - L1PA13 LINE L1 0 6163 5805 1986 134 3 27 chrX 30627890 30628189 -146345951 - AluSx SINE Alu -20 292 1 562 125 29 29 chrX 30628283 30628387 -146345753 + MLT1D LTR MaLR 402 505 0 380 273 34 34 chrX 30628944 30629182 -146344958 - L1MEc LINE L1 -4833 1709 1472 728 152 179 0 chrX 30629186 30629329 -146344811 - MER7A DNA MER2_type -3 334 166 1293 129 51 14 chrX 30629329 30629546 -146344594 - MER30B DNA MER1_type 0 230 6 295 48 24 0 chrX 30629557 30629599 -146344541 - MER30B DNA MER1_type -135 55 13 * 1190 110 0 0 chrX 30629597 30629770 -146344370 - MER7A DNA MER2_type -173 173 3 3015 260 67 9 chrX 30629772 30630784 -146343356 - L1MEc LINE L1 -5219 1606 536 21 0 0 0 chrX 30631339 30631360 -146342780 + AT_rich Low_complexity Low_complexity 1 21 0 566 287 146 25 chrX 30631435 30632100 -146342040 + L1ME4a LINE L1 5373 6119 -2 235 342 56 82 chrX 30633038 30633234 -146340906 - MIR3 SINE MIR -1 207 17 195 162 0 0 chrX 30633250 30633287 -146340853 + GA-rich Low_complexity Low_complexity 3 39 0 2145 178 0 5 chrX 30633386 30633768 -146340372 + MLT1B LTR MaLR 1 380 -10 24 0 0 0 chrX 30634681 30634705 -146339435 + AT_rich Low_complexity Low_complexity 1 24 0 204 190 17 17 chrX 30634743 30634801 -146339339 + (TTA)n Simple_repeat Simple_repeat 1 58 0 376 160 7 43 chrX 30634815 30635105 -146339035 + (TA)n Simple_repeat Simple_repeat 1 279 0 28600 94 26 10 chrX 30635128 30640716 -146333424 - L1PA7 LINE L1 -15 6454 742 760 177 0 34 chrX 30640863 30641010 -146333130 - FLAM_C SINE Alu 0 143 2 1235 241 138 0 chrX 30641883 30642231 -146331909 - MSTD LTR MaLR 0 396 1 243 171 186 57 chrX 30642704 30642774 -146331366 + MSTD LTR MaLR 174 252 -144 * 342 276 39 31 chrX 30642772 30642899 -146331241 - MLT1H LTR MaLR -29 520 393 1045 165 6 6 chrX 30642904 30643086 -146331054 - MER58A DNA MER1_type -1 223 42 231 233 0 0 chrX 30643135 30643178 -146330962 - MLT1H LTR MaLR -195 354 312 306 260 13 0 chrX 30643223 30643300 -146330840 - MLT1H LTR MaLR -392 157 80 20087 163 26 18 chrX 30643779 30645429 -146328711 - L1 LINE L1 -2363 5202 3567 318 87 0 0 chrX 30645429 30645475 -146328665 + (TG)n Simple_repeat Simple_repeat 1 46 0 20087 163 26 18 chrX 30645475 30645997 -146328143 - L1 LINE L1 -3998 3567 3051 2510 61 0 0 chrX 30645997 30646293 -146327847 - AluY SINE Alu -15 296 1 20087 163 26 18 chrX 30646293 30647053 -146327087 - L1 LINE L1 -4514 3051 2299 2428 85 0 0 chrX 30647053 30647358 -146326782 - AluSg SINE Alu -5 305 1 20087 163 26 18 chrX 30647358 30649553 -146324587 - L1 LINE L1 -5266 2299 25 522 264 7 14 chrX 30649936 30650084 -146324056 - L2 LINE L2 0 3313 3167 2856 135 74 2 chrX 30650300 30650811 -146323329 - MER34B LTR ERV1 0 565 18 434 327 165 26 chrX 30650813 30651394 -146322746 - L2 LINE L2 -943 2371 1710 2528 51 0 0 chrX 30651827 30652123 -146322017 + AluY SINE Alu 1 296 -15 3879 97 2 5 chrX 30652199 30652755 -146321385 - MER41A LTR ERV1 0 554 1 2356 79 10 0 chrX 30652787 30653092 -146321048 + AluY SINE Alu 1 308 -3 273 219 26 97 chrX 30653134 30653248 -146320892 + L2 LINE L2 2391 2496 -818 747 308 74 27 chrX 30653285 30653584 -146320556 + L2 LINE L2 2484 2796 -518 3020 190 80 3 chrX 30653585 30654259 -146319881 - LTR48 LTR ERV1 0 787 62 718 155 11 33 chrX 30654261 30654442 -146319698 + CT-rich Low_complexity Low_complexity 3 179 0 1595 90 35 4 chrX 30654452 30654707 -146319433 - LTR48-int LTR ERV1 -251 4764 4502 * 6556 89 42 32 chrX 30654703 30655813 -146318327 - MER4A-int LTR ERV1 -1641 4957 3837 3521 129 119 39 chrX 30655812 30656461 -146317679 - MER4A-int LTR ERV1 -2917 3681 2941 * 2425 39 0 0 chrX 30656461 30656796 -146317344 + AluY SINE Alu 1 335 0 3521 129 119 39 chrX 30656796 30657019 -146317121 - MER4A-int LTR ERV1 -3657 2941 2737 1302 146 75 0 chrX 30657019 30657258 -146316882 + LTR8 LTR ERV1 1 257 -434 4171 86 53 9 chrX 30657258 30657959 -146316181 - MER4A-int LTR ERV1 -4103 2495 1764 5576 106 72 23 chrX 30657981 30658451 -146315689 - MER4A-int LTR ERV1 -5600 1158 713 2311 112 77 26 chrX 30658451 30658879 -146315261 + LTR7 LTR ERV1 1 450 0 5576 106 72 23 chrX 30658879 30658987 -146315153 - MER4A-int LTR ERV1 -6045 713 612 2492 63 7 0 chrX 30658987 30659288 -146314852 - AluY SINE Alu -8 303 1 5576 106 72 23 chrX 30659288 30659624 -146314516 - MER4A-int LTR ERV1 -6146 612 198 1350 226 39 7 chrX 30659685 30659990 -146314150 - MER4A-int LTR ERV1 -4163 2168 1854 189 0 0 0 chrX 30660038 30660059 -146314081 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2608 81 149 14 chrX 30660140 30660688 -146313452 - MER4A-int LTR ERV1 -5912 686 1 1715 93 160 83 chrX 30660691 30661066 -146313074 - MER4A LTR ERV1 0 664 261 568 141 0 10 chrX 30661066 30661165 -146312975 - MER4A LTR ERV1 -566 98 1 488 285 106 0 chrX 30661178 30661301 -146312839 + L2 LINE L2 3136 3271 -1 725 207 110 35 chrX 30661433 30661660 -146312480 + L1ME3A LINE L1 5925 6168 -2 186 313 100 56 chrX 30661904 30662064 -146312076 - MIR SINE MIR -63 199 33 718 284 70 87 chrX 30662967 30663412 -146310728 + LTR16A LTR ERVL 1 437 -13 549 297 97 35 chrX 30663841 30664305 -146309835 + L1ME4a LINE L1 5393 5885 -236 2638 218 10 58 chrX 30665561 30665775 -146308365 + L1ME1 LINE L1 5499 5722 -444 2267 107 3 0 chrX 30665775 30666074 -146308066 - AluSx SINE Alu -12 300 1 2638 218 10 58 chrX 30666074 30666555 -146307585 + L1ME1 LINE L1 5722 6161 -5 2179 92 55 0 chrX 30666573 30666865 -146307275 + AluSg SINE Alu 1 308 -2 3848 122 61 42 chrX 30667061 30667702 -146306438 - MER39B LTR ERV1 0 653 1 2320 100 3 0 chrX 30667776 30668076 -146306064 + AluSq SINE Alu 1 301 -12 385 156 0 0 chrX 30669128 30669192 -146304948 - L1MC4a LINE L1 -119 7689 7626 982 221 147 81 chrX 30669408 30669938 -146304202 - MER34B LTR ERV1 0 565 1 2588 148 138 16 chrX 30669955 30670455 -146303685 + LTR48 LTR ERV1 1 561 -226 3859 107 4 4 chrX 30670457 30670964 -146303176 - MER84 LTR ERV1 0 507 1 10562 106 26 8 chrX 30670964 30672442 -146301698 - MER84-int LTR ERV1 0 4954 3451 * 16972 87 24 8 chrX 30672438 30674681 -146299459 - MER84-int LTR ERV1 -2674 2280 1 2149 105 0 41 chrX 30674681 30674780 -146299360 - MER84 LTR ERVI 0 507 405 2148 124 0 0 chrX 30674780 30675079 -146299061 - AluSx SINE Alu -9 303 5 2149 105 0 41 chrX 30675079 30675294 -146298846 - MER84 LTR ERVI -102 405 206 881 194 59 11 chrX 30675292 30675478 -146298662 - Charlie4 DNA MER1_type -1766 195 1 * 2312 79 0 30 chrX 30676154 30676459 -146297681 - AluSx SINE Alu -16 296 1 1301 256 82 54 chrX 30676569 30677072 -146297068 - LTR33 LTR ERVL -3 518 2 393 185 65 0 chrX 30678499 30678591 -146295549 - MLT1J LTR MaLR 0 511 414 923 216 131 5 chrX 30678662 30678884 -146295256 - MLT1J LTR MaLR -261 250 1 405 182 0 0 chrX 30679160 30679226 -146294914 - MER45B DNA AcHobo 0 1040 975 750 177 0 31 chrX 30679237 30679367 -146294773 + FLAM_A SINE Alu 1 126 -7 1019 193 78 46 chrX 30679393 30679611 -146294529 - MER45B DNA AcHobo -815 225 1 248 350 86 0 chrX 30679616 30679733 -146294407 + LTR16A LTR ERVL 1 127 -323 270 307 35 9 chrX 30679975 30680089 -146294051 - HAL1 LINE L1 -834 1673 1557 2288 255 72 43 chrX 30680119 30680229 -146293911 - L1MC4 LINE L1 -15 8027 7922 2239 118 0 3 chrX 30680229 30680534 -146293606 - AluSp SINE Alu -9 304 1 2288 255 72 43 chrX 30680534 30680634 -146293506 - L1MC4 LINE L1 -120 7922 7826 2264 101 0 7 chrX 30680634 30680931 -146293209 + AluSg SINE Alu 1 295 -15 2288 255 72 43 chrX 30680931 30681285 -146292855 - L1MC4 LINE L1 -216 7826 7484 2481 71 3 0 chrX 30681285 30681582 -146292558 - AluSp SINE Alu -15 298 1 2288 255 72 43 chrX 30681582 30682042 -146292098 - L1MC4 LINE L1 -558 7484 6971 1445 214 103 79 chrX 30682542 30682758 -146291382 - L1MC4a LINE L1 -1685 6123 5914 2372 81 3 0 chrX 30682758 30683054 -146291086 - AluSp SINE Alu -16 297 1 1445 214 103 79 chrX 30683054 30683429 -146290711 - L1MC4a LINE L1 -1894 5914 5518 363 283 35 112 chrX 30683717 30684003 -146290137 + HAL1b LINE L1 100 363 -985 330 306 90 90 chrX 30684057 30684524 -146289616 + L1ME LINE L1 4560 5026 -1120 2313 110 0 0 chrX 30684529 30684829 -146289311 + AluSx SINE Alu 1 300 -12 252 0 0 0 chrX 30684962 30684990 -146289150 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 8041 26 5 0 chrX 30684990 30685944 -146288196 - L1PA4 LINE L1 -12 6143 5188 1019 315 26 22 chrX 30686087 30686541 -146287599 + L1ME LINE L1 5328 5783 -338 216 0 0 0 chrX 30686563 30686587 -146287553 + (TA)n Simple_repeat Simple_repeat 2 25 0 257 320 13 0 chrX 30686628 30686703 -146287437 - MIR SINE MIR -10 252 177 1675 224 86 24 chrX 30686709 30686791 -146287349 + LTR33 LTR ERVL 1 77 -444 3217 140 88 2 chrX 30686791 30687305 -146286835 - LTR64 LTR ERVK 0 558 1 1675 224 86 24 chrX 30687305 30687713 -146286427 + LTR33 LTR ERVL 77 521 0 258 224 35 0 chrX 30687733 30687791 -146286349 - MIR SINE MIR -121 141 82 416 312 29 6 chrX 30687913 30688083 -146286057 + L2 LINE L2 2197 2370 -944 384 331 174 32 chrX 30688099 30688507 -146285633 + L2 LINE L2 2507 2972 -342 315 299 47 47 chrX 30688564 30688778 -146285362 + L2 LINE L2 3099 3312 -1 2463 70 3 0 chrX 30689112 30689411 -146284729 - AluSp SINE Alu -13 300 1 783 121 0 0 chrX 30689773 30689913 -146284227 + (CCCCG)n Simple_repeat Simple_repeat 4 143 0 229 310 23 8 chrX 30690413 30690542 -146283598 + (CCCCAG)n Simple_repeat Simple_repeat 6 136 0 516 269 65 32 chrX 30691977 30692163 -146281977 - MIR SINE MIR -7 255 64 339 25 0 0 chrX 30692421 30692461 -146281679 + (TG)n Simple_repeat Simple_repeat 1 40 0 380 201 0 38 chrX 30692470 30692654 -146281486 + (TA)n Simple_repeat Simple_repeat 2 178 0 216 67 0 0 chrX 30693338 30693368 -146280772 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 592 198 8 24 chrX 30693776 30693902 -146280238 + MER69 DNA AcHobo 2400 2523 -3 2030 151 6 6 chrX 30695265 30695582 -146278558 - L1PB4 LINE L1 -6 6150 5834 256 375 34 40 chrX 30696318 30696494 -146277646 - L3 LINE CR1 -12 1565 1391 24 32 0 0 chrX 30697594 30697625 -146276515 + AT_rich Low_complexity Low_complexity 1 31 0 211 318 8 48 chrX 30698824 30698950 -146275190 - MIR3 SINE MIR -80 128 8 195 211 0 105 chrX 30699813 30699889 -146274251 - L2 LINE L2 -185 3087 3020 391 255 53 0 chrX 30700605 30700699 -146273441 + MER103 DNA DNA 44 142 -24 428 0 0 19 chrX 30701141 30701194 -146272946 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 1592 267 111 64 chrX 30701580 30702249 -146271891 + L2 LINE L2 2324 3034 -279 1956 59 13 4 chrX 30702249 30702486 -146271654 + L1PA5 LINE L1 5912 6150 -4 1592 267 111 64 chrX 30702486 30702780 -146271360 + L2 LINE L2 3034 3313 0 770 277 110 25 chrX 30703279 30703752 -146270388 - L1ME LINE L1 -449 5721 5204 263 311 80 46 chrX 30704022 30704324 -146269816 - L1ME LINE L1 -1347 4799 4488 25 23 0 23 chrX 30704441 30704466 -146269674 + AT_rich Low_complexity Low_complexity 1 26 -16 2012 122 3 30 chrX 30704466 30704762 -146269378 + AluSg SINE Alu 1 288 -22 25 23 0 23 chrX 30704762 30704779 -146269361 + AT_rich Low_complexity Low_complexity 26 42 0 246 284 90 26 chrX 30704890 30705045 -146269095 - L1ME LINE L1 -1955 4191 4027 208 281 0 0 chrX 30705305 30705362 -146268778 - L2 LINE L2 -1370 1944 1888 377 327 111 13 chrX 30705376 30705602 -146268538 - MIR SINE MIR -1 261 14 45503 35 3 2 chrX 30705783 30711933 -146262207 - L1PA3 LINE L1 0 6155 2 544 265 135 20 chrX 30711978 30712106 -146262034 - L2 LINE L2 -9 3304 3143 261 0 0 0 chrX 30712106 30712135 -146262005 + (TG)n Simple_repeat Simple_repeat 2 30 0 544 265 135 20 chrX 30712135 30712206 -146261934 - L2 LINE L2 -170 3143 3082 376 260 10 0 chrX 30715143 30715247 -146258893 + L1ME LINE L1 5595 5699 -422 330 242 10 20 chrX 30715611 30715710 -146258430 - LTR16B LTR ERVL -12 452 355 423 236 130 0 chrX 30715735 30715858 -146258282 - L1MC5 LINE L1 -521 7440 7302 200 122 24 0 chrX 30715870 30715911 -146258229 + C-rich Low_complexity Low_complexity 5 46 0 2087 206 44 63 chrX 30715918 30716757 -146257383 - L1MC5 LINE L1 -658 7303 6476 3406 161 39 23 chrX 30717171 30717217 -146256923 + L1MC3 LINE L1 6601 6645 -1140 2537 63 0 0 chrX 30717217 30717517 -146256623 - AluY SINE Alu -11 300 1 3406 161 39 23 chrX 30717517 30718171 -146255969 + L1MC3 LINE L1 6645 7312 -473 255 31 0 0 chrX 30719286 30719318 -146254822 + (CA)n Simple_repeat Simple_repeat 2 33 0 342 0 0 0 chrX 30719873 30719911 -146254229 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2207 108 6 13 chrX 30720201 30720516 -146253624 - AluSq SINE Alu 0 313 1 379 289 43 52 chrX 30720517 30720749 -146253391 - MLT1J LTR MaLR -172 339 110 455 242 186 0 chrX 30720986 30721110 -146253030 + MER5A DNA MER1_type 11 157 -32 205 266 210 40 chrX 30721010 30721134 -146253006 - MER5A DNA MER1_type -23 166 22 * 424 308 57 19 chrX 30721223 30721382 -146252758 + MIR3 SINE MIR 30 194 -14 1968 151 0 19 chrX 30721853 30722164 -146251976 + AluSp SINE Alu 1 305 -8 1968 269 90 12 chrX 30723009 30723599 -146250541 + L2 LINE L2 2304 2939 -375 1503 130 0 0 chrX 30723618 30723834 -146250306 - AluSg/x SINE Alu -13 297 82 320 263 105 40 chrX 30723856 30724008 -146250132 - L1M4 LINE L1 -3309 2837 2676 780 202 11 0 chrX 30724021 30724199 -146249941 + L1MD3 LINE L1 7806 7985 -10 2274 199 69 19 chrX 30724309 30724877 -146249263 + L1ME2 LINE L1 5513 6108 -56 1612 117 8 0 chrX 30724908 30725173 -146248967 + L1MA8 LINE L1 6003 6269 -22 1633 166 87 6 chrX 30725290 30725622 -146248518 + MLT2D LTR ERVL 2 360 -54 243 133 0 0 chrX 30725631 30725676 -146248464 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 261 167 0 19 chrX 30725720 30725740 -146248400 + MLT2D LTR ERVL 462 481 -39 231 36 0 0 chrX 30725740 30725768 -146248372 + (TC)n Simple_repeat Simple_repeat 1 28 0 261 167 0 19 chrX 30725768 30725801 -146248339 + MLT2D LTR ERVL 481 514 -6 247 188 141 16 chrX 30726990 30727054 -146247086 + L2 LINE L2 3242 3313 0 2251 60 0 0 chrX 30727264 30727545 -146246595 - L1PA8 LINE L1 -5 6167 5887 740 11 0 0 chrX 30729000 30729090 -146245050 + L1PA2 LINE L1 6066 6155 0 188 217 14 0 chrX 30729090 30729150 -146244990 + GA-rich Low_complexity Low_complexity 8 71 0 275 256 87 35 chrX 30729182 30729354 -146244786 + L1ME4a LINE L1 5739 5919 -202 275 254 30 67 chrX 30729472 30729637 -146244503 - L1ME LINE L1 -276 5845 5687 30 89 0 0 chrX 30729782 30729861 -146244279 + AT_rich Low_complexity Low_complexity 1 79 0 272 286 43 14 chrX 30730347 30730487 -146243653 + L1ME4a LINE L1 5975 6118 -3 236 313 112 8 chrX 30731300 30731434 -146242706 + MIR SINE MIR 103 250 -12 477 315 37 59 chrX 30731906 30732230 -146241910 - L2 LINE L2 -1 3312 2996 * 856 292 82 72 chrX 30732206 30732709 -146241431 - L2 LINE L2 -448 2866 2359 315 256 0 26 chrX 30733479 30733557 -146240583 - L2 LINE L2 0 3272 3197 391 182 0 30 chrX 30733594 30733693 -146240447 + CT-rich Low_complexity Low_complexity 2 97 0 4442 151 52 13 chrX 30734485 30735304 -146238836 + MER21B LTR ERV1 1 851 -12 1597 259 38 45 chrX 30735607 30736044 -146238096 - L2 LINE L2 -4 3309 2873 2238 101 0 3 chrX 30736044 30736340 -146237800 + AluSc SINE Alu 1 295 -14 1597 259 38 45 chrX 30736340 30736587 -146237553 - L2 LINE L2 -440 2873 2626 5841 112 17 3 chrX 30736879 30737913 -146236227 - L1PA16 LINE L1 -11 6155 5105 606 157 22 135 chrX 30738322 30738449 -146235691 + MER3 DNA MER1_type 21 77 -85 2191 93 0 0 chrX 30738449 30738728 -146235412 - AluY SINE Alu -17 294 16 606 157 22 135 chrX 30738728 30738778 -146235362 + MER3 DNA MER1_type 77 131 -31 254 200 15 31 chrX 30739312 30739377 -146234763 - L2 LINE L2 -1 3271 3208 786 150 50 62 chrX 30739473 30739633 -146234507 + FRAM SINE Alu 1 158 -18 306 266 159 18 chrX 30739707 30739820 -146234320 - L2 LINE L2 -23 3249 3121 197 222 0 22 chrX 30740090 30740135 -146234005 + L2 LINE L2 3206 3249 -23 575 209 39 0 chrX 30740329 30740458 -146233682 - L1MA9 LINE L1 -37 6275 6142 1987 140 46 17 chrX 30740952 30741303 -146232837 + MER46B DNA MER2_type 1 236 0 48 43 0 0 chrX 30741373 30741442 -146232698 + AT_rich Low_complexity Low_complexity 1 69 0 485 287 36 36 chrX 30741485 30741764 -146232376 - L1MC4a LINE L1 -1915 5893 5615 2524 145 16 21 chrX 30741824 30742258 -146231882 + MSTB1 LTR MaLR 1 432 0 22 0 0 0 chrX 30742263 30742285 -146231855 + AT_rich Low_complexity Low_complexity 1 22 0 277 319 0 15 chrX 30743145 30743280 -146230860 - HAL1 LINE L1 -1602 905 773 15531 115 20 17 chrX 30744099 30745049 -146229091 + Tigger1 DNA MER2_type 1 946 -1472 2074 114 0 0 chrX 30745049 30745353 -146228787 - AluSx SINE Alu 0 304 1 15531 115 20 17 chrX 30745353 30746811 -146227329 + Tigger1 DNA MER2_type 946 2418 0 8652 78 3 5 chrX 30746983 30748233 -146225907 - L1P LINE L1 -1913 4233 2986 192 282 0 0 chrX 30749895 30749973 -146224167 + CT-rich Low_complexity Low_complexity 4 81 0 184 325 25 50 chrX 30750117 30750197 -146223943 - L2 LINE L2 -8 3305 3228 355 244 13 13 chrX 30750549 30750627 -146223513 + L2 LINE L2 3186 3263 -50 252 229 96 60 chrX 30750802 30750968 -146223172 - L1 LINE L1 -1100 5046 4875 235 220 20 0 chrX 30751084 30751134 -146223006 + GA-rich Low_complexity Low_complexity 2 52 0 21 0 0 0 chrX 30751201 30751222 -146222918 + AT_rich Low_complexity Low_complexity 1 21 0 1237 20 0 0 chrX 30752989 30753135 -146221005 - L1PA4 LINE L1 -483 5672 5527 4069 23 2 0 chrX 30753135 30753605 -146220535 + L1PA4 LINE L1 5677 6151 -4 21 36 0 0 chrX 30755135 30755163 -146218977 + AT_rich Low_complexity Low_complexity 1 28 0 706 86 9 0 chrX 30755314 30755419 -146218721 + L1MA2 LINE L1 6199 6304 0 395 353 0 9 chrX 30755556 30755672 -146218468 + MIR SINE MIR 16 130 -78 505 152 19 29 chrX 30755791 30755896 -146218244 - L1MB8 LINE L1 0 6178 6075 2272 128 19 25 chrX 30756292 30756658 -146217482 - THE1B LTR MaLR 0 364 1 205 297 139 10 chrX 30756688 30756789 -146217351 - L2 LINE L2 -5 3267 3154 2204 165 61 10 chrX 30757154 30757561 -146216579 - MSTA LTR MaLR 0 428 1 1973 147 9 9 chrX 30758721 30759068 -146215072 - MER47A DNA MER2_type 0 366 20 567 286 16 31 chrX 30759449 30759641 -146214499 + MIR SINE MIR 19 207 -55 763 247 12 0 chrX 30759647 30759754 -146214386 + MIR SINE MIR 3 114 -148 1716 251 22 16 chrX 30759754 30760201 -146213939 - LTR16A LTR ERVL 0 450 1 763 247 12 0 chrX 30760201 30760255 -146213885 + MIR SINE MIR 114 166 -96 267 333 56 28 chrX 30760303 30760447 -146213693 - MIR3 SINE MIR 0 208 61 25 31 0 0 chrX 30761962 30761994 -146212146 + AT_rich Low_complexity Low_complexity 1 32 0 231 378 199 20 chrX 30762214 30762566 -146211574 - L2 LINE L2 0 3272 2858 456 258 39 26 chrX 30763156 30763311 -146210829 - MIR3 SINE MIR -6 202 46 2118 186 47 23 chrX 30764263 30764650 -146209490 - MSTD LTR MaLR 0 396 1 1903 125 56 0 chrX 30764817 30765105 -146209035 + AluSx SINE Alu 1 304 -8 225 94 0 0 chrX 30765607 30765639 -146208501 + (TA)n Simple_repeat Simple_repeat 1 32 0 2512 21 0 7 chrX 30765639 30765918 -146208222 - L1PA5 LINE L1 -7 6147 5871 186 296 19 0 chrX 30766925 30766979 -146207161 + MER5B DNA MER1_type 4 58 -120 2094 136 0 0 chrX 30767255 30767541 -146206599 + AluSx SINE Alu 1 286 -26 219 36 0 0 chrX 30767541 30767569 -146206571 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 410 310 76 16 chrX 30767668 30767852 -146206288 - LTR16C LTR ERVL 0 491 297 201 162 0 0 chrX 30768110 30768147 -146205993 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 673 254 109 109 chrX 30770247 30770833 -146203307 + MLT1L LTR MaLR 22 607 -8 24 0 0 0 chrX 30770900 30770924 -146203216 + AT_rich Low_complexity Low_complexity 1 24 0 309 260 96 41 chrX 30770990 30771136 -146203004 - MIR SINE MIR -106 156 3 1213 274 65 26 chrX 30771341 30771466 -146202674 - L2 LINE L2 -8 3305 3186 212 0 36 0 chrX 30771466 30771494 -146202646 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1213 274 65 26 chrX 30771494 30771956 -146202184 - L2 LINE L2 -127 3186 2689 873 288 41 2 chrX 30771956 30772337 -146201803 + LTR16A LTR ERVL 1 445 -5 264 284 28 55 chrX 30772352 30772461 -146201679 - L2 LINE L2 -635 2679 2574 302 256 12 0 chrX 30772491 30772577 -146201563 - L2 LINE L2 -997 2317 2231 208 356 19 29 chrX 30773754 30773858 -146200282 + L2 LINE L2 2943 3045 -227 393 69 17 0 chrX 30775642 30775700 -146198440 - L1P LINE L1 -749 5405 5347 1857 126 0 4 chrX 30775700 30775964 -146198176 + L1PB1 LINE L1 5876 6143 -8 304 350 122 21 chrX 30776025 30776429 -146197711 - L2 LINE L2 -259 3054 2624 199 220 17 51 chrX 30776627 30776686 -146197454 - MIR SINE MIR -198 64 8 2043 214 37 0 chrX 30776808 30777237 -146196903 + MER110 LTR ERV1 47 491 0 2404 171 106 11 chrX 30777692 30778153 -146195987 + MLT1D LTR MaLR 1 505 0 255 61 0 0 chrX 30778824 30778857 -146195283 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 2468 60 30 0 chrX 30778902 30779201 -146194939 + L1PA8 LINE L1 5864 6171 -1 359 155 146 39 chrX 30780048 30780151 -146193989 + L2 LINE L2 3197 3310 -3 33 0 0 0 chrX 30781489 30781522 -146192618 + AT_rich Low_complexity Low_complexity 1 33 0 2539 68 0 3 chrX 30781522 30781832 -146192308 - AluSc SINE Alu 0 309 1 2244 114 0 0 chrX 30781832 30782122 -146192018 - AluSq SINE Alu -19 294 5 231 297 78 0 chrX 30782343 30782407 -146191733 + L3 LINE CR1 1492 1560 -17 521 287 126 17 chrX 30782708 30782938 -146191202 + LTR16A LTR ERVL 196 450 0 400 277 78 21 chrX 30783047 30783188 -146190952 - MIR3 SINE MIR -28 180 32 414 309 16 11 chrX 30791056 30791193 -146182947 - MIR3 SINE MIR -50 158 22 221 97 0 0 chrX 30791176 30791207 -146182933 + L2 LINE L2 3271 3301 -12 * 1735 171 7 7 chrX 30791393 30791680 -146182460 - AluJb SINE Alu -25 287 1 398 318 52 23 chrX 30792041 30792214 -146181926 + MER5B DNA MER1_type 1 178 0 1032 210 55 143 chrX 30792437 30792871 -146181269 + MSTD LTR MaLR 1 396 0 207 182 0 0 chrX 30793421 30793454 -146180686 + polypurine Low_complexity Low_complexity 2 34 0 326 294 96 55 chrX 30794138 30794284 -146179856 + L2 LINE L2 3121 3272 0 456 148 20 69 chrX 30794537 30794638 -146179502 + LTR16A LTR ERVL 235 330 -120 21 0 0 0 chrX 30795949 30795970 -146178170 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chrX 30796067 30796090 -146178050 + (A)n Simple_repeat Simple_repeat 1 23 0 268 174 101 0 chrX 30797943 30798012 -146176128 - MIR SINE MIR -70 192 117 1555 73 0 0 chrX 30799540 30799731 -146174409 + AluSg/x SINE Alu 114 304 -8 2287 118 0 0 chrX 30800002 30800307 -146173833 - AluSq SINE Alu -8 305 1 817 159 0 28 chrX 30800441 30800586 -146173554 + FLAM_C SINE Alu 1 141 -2 8930 110 17 34 chrX 30802270 30804110 -146170030 + L1P3 LINE L1 12 1713 -4433 1857 164 7 3 chrX 30805120 30805295 -146168845 - AluJo SINE Alu -13 299 121 261 0 0 0 chrX 30805295 30805324 -146168816 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1857 164 7 3 chrX 30805324 30805446 -146168694 - AluJo SINE Alu -191 121 1 968 169 11 6 chrX 30805697 30805874 -146168266 - L1MB8 LINE L1 -3 6175 5998 8651 181 36 19 chrX 30805884 30808024 -146166116 - L1MB8 LINE L1 -588 5596 3416 465 267 53 7 chrX 30808100 30808250 -146165890 + MER103 DNA DNA 3 159 -7 727 133 7 44 chrX 30810397 30810532 -146163608 + L1MB3 LINE L1 6042 6171 -12 28 0 0 0 chrX 30812792 30812820 -146161320 + AT_rich Low_complexity Low_complexity 1 28 0 831 129 0 16 chrX 30812820 30812944 -146161196 - FLAM_C SINE Alu -11 132 11 262 62 0 0 chrX 30812988 30813020 -146161120 + U2 snRNA snRNA 4 35 -153 449 260 20 41 chrX 30813275 30813421 -146160719 + L2 LINE L2 3158 3300 -13 420 286 167 11 chrX 30814736 30814952 -146159188 + MIR SINE MIR 16 262 0 2441 79 0 22 chrX 30815183 30815501 -146158639 - AluY SINE Alu 0 311 1 2100 149 0 3 chrX 30816191 30816500 -146157640 - AluJb SINE Alu -4 308 1 507 248 30 8 chrX 30816864 30816997 -146157143 + MIR SINE MIR 79 214 -48 249 33 0 0 chrX 30818138 30818168 -146155972 + (TG)n Simple_repeat Simple_repeat 2 31 0 211 205 0 0 chrX 30818354 30818393 -146155747 + A-rich Low_complexity Low_complexity 2 40 0 23 0 0 0 chrX 30819318 30819341 -146154799 + AT_rich Low_complexity Low_complexity 1 23 0 253 269 15 0 chrX 30819453 30819520 -146154620 - L1MEd LINE L1 -5453 666 599 399 41 0 0 chrX 30819898 30819947 -146154193 + (TG)n Simple_repeat Simple_repeat 2 50 0 596 284 73 41 chrX 30820074 30820549 -146153591 - L1 LINE L1 -2378 3768 3244 1754 179 37 3 chrX 30820549 30820846 -146153294 - AluJo SINE Alu -5 307 1 596 284 73 41 chrX 30820846 30821181 -146152959 - L1 LINE L1 -2902 3244 2921 452 272 87 42 chrX 30821320 30821769 -146152371 + L1MEd LINE L1 729 1197 -5008 518 286 95 67 chrX 30821776 30822059 -146152081 + HAL1 LINE L1 1279 1569 -938 302 320 35 51 chrX 30822485 30822682 -146151458 + L1MEd LINE L1 2093 2286 -4110 1230 112 6 0 chrX 30822682 30822874 -146151266 + AluSg/x SINE Alu 114 306 0 3762 187 200 10 chrX 30823085 30824149 -146149991 - L1MD3 LINE L1 -10 7985 6720 951 216 69 0 chrX 30824589 30824807 -146149333 + MIR SINE MIR 20 252 -10 279 54 0 0 chrX 30825757 30825794 -146148346 + (CA)n Simple_repeat Simple_repeat 2 38 0 1983 103 49 0 chrX 30825794 30826057 -146148083 - AluSx SINE Alu -36 276 1 304 315 14 62 chrX 30826871 30827017 -146147123 - MIR SINE MIR -57 205 67 2858 10 0 0 chrX 30827027 30827338 -146146802 + AluY SINE Alu 1 311 0 711 172 77 50 chrX 30827381 30827642 -146146498 + Charlie1 DNA MER1_type 2453 2720 -41 360 303 63 7 chrX 30827757 30827899 -146146241 + MIR SINE MIR 51 200 -62 6719 87 19 10 chrX 30828763 30829775 -146144365 - L1MA2 LINE L1 -4 6300 5280 881 225 92 29 chrX 30830011 30830251 -146143889 - MIR SINE MIR 0 262 8 563 294 81 9 chrX 30830278 30830489 -146143651 - MIR SINE MIR -17 245 20 268 160 0 0 chrX 30830491 30830541 -146143599 - L1MA10 LINE L1 -2 6332 6283 216 0 0 0 chrX 30830769 30830793 -146143347 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 1048 222 54 84 chrX 30830793 30831221 -146142919 - L2 LINE L2 -13 3300 2886 371 156 0 22 chrX 30831761 30831851 -146142289 + (TGGA)n Simple_repeat Simple_repeat 2 89 0 1486 245 81 37 chrX 30832774 30833427 -146140713 + L1ME3A LINE L1 5485 6166 -4 444 103 13 13 chrX 30833435 30833513 -146140627 + L1MB8 LINE L1 6092 6169 -9 410 196 10 0 chrX 30834106 30834203 -146139937 + CT-rich Low_complexity Low_complexity 2 99 0 1349 282 183 8 chrX 30834375 30835095 -146139045 + L2 LINE L2 2454 3313 0 1337 133 12 8 chrX 30835165 30835405 -146138735 - L1MB7 LINE L1 -256 5928 5688 280 241 136 34 chrX 30835409 30835536 -146138604 - MIR SINE MIR -63 145 19 1426 266 25 18 chrX 30836230 30836677 -146137463 + LTR16A LTR ERVL 1 450 0 205 321 45 37 chrX 30837772 30837906 -146136234 + MIR SINE MIR 127 261 -1 517 213 102 0 chrX 30837997 30838124 -146136016 + MIR SINE MIR 77 216 -46 317 281 89 60 chrX 30838907 30839099 -146135041 - MIR SINE MIR -34 174 17 417 189 0 0 chrX 30839880 30839970 -146134170 + (CAT)n Simple_repeat Simple_repeat 2 91 0 804 277 29 25 chrX 30839970 30840212 -146133928 - MIR SINE MIR -1 261 19 2523 81 0 0 chrX 30840231 30840538 -146133602 - AluSx SINE Alu -5 307 1 2262 114 3 0 chrX 30841467 30841764 -146132376 + AluSx SINE Alu 1 298 -14 288 200 0 0 chrX 30841878 30841938 -146132202 + (CA)n Simple_repeat Simple_repeat 1 60 0 653 252 13 0 chrX 30841964 30842119 -146132021 + L2 LINE L2 2687 2843 -471 464 269 81 0 chrX 30842123 30842272 -146131868 - MER63A DNA MER1_type -6 204 44 566 248 66 129 chrX 30842312 30842630 -146131510 + L2 LINE L2 2853 3150 -163 422 212 40 10 chrX 30843112 30843211 -146130929 + L2 LINE L2 3151 3252 -61 820 273 144 73 chrX 30843472 30843576 -146130564 - L2 LINE L2 -2 3311 3216 1764 174 22 68 chrX 30843576 30843991 -146130149 - MSTD LTR MaLR 0 396 1 820 273 144 73 chrX 30843991 30844229 -146129911 - L2 LINE L2 -97 3216 2925 1301 224 96 76 chrX 30844229 30844769 -146129371 - MLT1H1 LTR MaLR 0 555 5 820 273 144 73 chrX 30844769 30844890 -146129250 - L2 LINE L2 -388 2925 2814 626 332 32 22 chrX 30845768 30846019 -146128121 + MIR SINE MIR 12 262 0 1469 142 76 7 chrX 30846931 30847234 -146126906 + MER33 DNA MER1_type 1 324 0 375 23 0 0 chrX 30848059 30848103 -146126037 + (TG)n Simple_repeat Simple_repeat 2 45 0 374 258 12 43 chrX 30848407 30848570 -146125570 - HAL1b LINE L1 -19 1329 1172 220 196 0 22 chrX 30848571 30848617 -146125523 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 191 170 21 0 chrX 30848625 30848672 -146125468 + GA-rich Low_complexity Low_complexity 4 51 0 497 217 92 20 chrX 30848698 30848850 -146125290 - HAL1b LINE L1 -200 1148 986 431 267 95 35 chrX 30848861 30849146 -146124994 - HAL1b LINE L1 -413 935 634 2229 139 78 24 chrX 30849446 30849856 -146124284 + Tigger2a DNA MER2_type 3 434 0 218 213 21 0 chrX 30850211 30850258 -146123882 + MIR SINE MIR 104 151 -111 1068 61 0 0 chrX 30854430 30854562 -146119578 - AluSq/x SINE Alu -180 132 1 25 51 0 0 chrX 30856085 30856124 -146118016 + AT_rich Low_complexity Low_complexity 1 39 0 566 287 146 25 chrX 30857422 30858087 -146116053 - L1ME4a LINE L1 -2 6119 5373 21 0 0 0 chrX 30858162 30858183 -146115957 + AT_rich Low_complexity Low_complexity 1 21 0 3028 259 67 9 chrX 30858738 30859750 -146114390 + L1MEc LINE L1 536 1606 -5219 1190 110 0 0 chrX 30859752 30859925 -146114215 + MER7A DNA MER2_type 3 173 -173 295 48 24 0 chrX 30859923 30859965 -146114175 + MER30B DNA MER1_type 13 55 -135 * 1293 129 51 14 chrX 30859976 30860193 -146113947 + MER30B DNA MER1_type 6 230 0 728 152 179 0 chrX 30860193 30860336 -146113804 + MER7A DNA MER2_type 165 333 -3 380 273 34 34 chrX 30860340 30860578 -146113562 + L1MEc LINE L1 1472 1709 -4833 562 125 29 29 chrX 30861135 30861239 -146112901 - MLT1D LTR MaLR 0 505 402 1986 134 3 27 chrX 30861333 30861632 -146112508 + AluSx SINE Alu 1 292 -20 2329 127 0 6 chrX 30863203 30863564 -146110576 + L1PA13 LINE L1 5805 6163 0 32 0 0 0 chrX 30863590 30863622 -146110518 + AT_rich Low_complexity Low_complexity 1 32 0 25 90 0 0 chrX 30863795 30863862 -146110278 + AT_rich Low_complexity Low_complexity 1 67 0 195 114 0 0 chrX 30864351 30864386 -146109754 + (T)n Simple_repeat Simple_repeat 1 35 0 336 290 109 7 chrX 30864410 30864548 -146109592 + MIR SINE MIR 110 261 -1 2603 145 21 5 chrX 30864625 30865046 -146109094 - MSTA LTR MaLR 0 428 1 2059 144 0 3 chrX 30865095 30865407 -146108733 - AluSx SINE Alu -1 311 1 565 330 165 17 chrX 30865482 30865888 -146108252 + L3 LINE CR1 177 642 -935 430 311 20 20 chrX 30865866 30866014 -146108126 - MIR SINE MIR -52 210 63 * 400 218 98 30 chrX 30866013 30866146 -146107994 + MIR SINE MIR 44 185 -77 * 978 95 0 14 chrX 30866362 30866509 -146107631 + L1PA16 LINE L1 6021 6165 -1 185 259 154 86 chrX 30867668 30867830 -146106310 + L3b LINE CR1 1248 1420 -163 249 294 265 10 chrX 30867884 30867986 -146106154 + MIR3 SINE MIR 30 157 -51 278 171 0 0 chrX 30868265 30868306 -146105834 - AluJ/FLAM SINE Alu -245 57 17 1766 147 4 0 chrX 30868306 30868565 -146105575 - AluSx SINE Alu -48 264 5 1985 168 7 0 chrX 30868578 30868888 -146105252 - AluJb SINE Alu 0 312 1 305 323 135 65 chrX 30869260 30869467 -146104673 - L2 LINE L2 -99 3173 2931 627 200 49 27 chrX 30869467 30869652 -146104488 - MER53 DNA DNA 0 189 1 305 323 135 65 chrX 30869652 30869785 -146104355 - L2 LINE L2 -341 2931 2809 2178 100 0 0 chrX 30870318 30870626 -146103514 - AluSc SINE Alu 0 308 1 1755 170 31 10 chrX 30871471 30871489 -146102651 - AluJb SINE Alu -17 295 279 489 17 0 0 chrX 30871489 30871547 -146102593 + (TG)n Simple_repeat Simple_repeat 1 58 0 1755 170 31 10 chrX 30871547 30871817 -146102323 - AluJb SINE Alu -33 279 1 289 320 173 33 chrX 30871842 30871992 -146102148 + L2 LINE L2 3102 3272 0 251 324 0 18 chrX 30872415 30872526 -146101614 + MLT1I LTR MaLR 1 109 -300 238 161 25 99 chrX 30872563 30872644 -146101496 + CT-rich Low_complexity Low_complexity 3 77 0 267 293 0 40 chrX 30875339 30875438 -146098702 + LTR67 LTR ERVL 435 529 -28 189 0 0 0 chrX 30876140 30876161 -146097979 + (A)n Simple_repeat Simple_repeat 1 21 0 455 300 152 19 chrX 30876339 30876662 -146097478 + LTR16C LTR ERVL 123 488 -3 252 0 0 0 chrX 30876799 30876827 -146097313 + (TG)n Simple_repeat Simple_repeat 2 29 0 241 351 96 29 chrX 30878294 30878639 -146095501 - L1MEd LINE L1 -5664 455 88 21 36 0 0 chrX 30878642 30878670 -146095470 + AT_rich Low_complexity Low_complexity 1 28 0 1379 169 14 21 chrX 30878727 30879006 -146095134 - L1MB5 LINE L1 0 6174 5898 26 0 0 0 chrX 30879191 30879217 -146094923 + AT_rich Low_complexity Low_complexity 1 26 0 2108 112 0 3 chrX 30879227 30879514 -146094626 - AluSx SINE Alu -26 286 1 1063 148 14 56 chrX 30880304 30880417 -146093723 + MER20 DNA MER1_type 1 102 -117 1214 223 37 72 chrX 30880417 30880793 -146093347 - MLT1A1 LTR MaLR 0 365 3 1063 148 14 56 chrX 30880793 30880895 -146093245 + MER20 DNA MER1_type 102 207 -12 1921 128 32 4 chrX 30881053 30881334 -146092806 + AluSx SINE Alu 7 295 -17 212 341 87 48 chrX 30881821 30881947 -146092193 - L2 LINE L2 0 3272 3142 826 144 32 27 chrX 30882086 30882274 -146091866 - MER53 DNA DNA 0 189 1 2190 131 0 0 chrX 30882483 30882796 -146091344 - AluSq SINE Alu 0 313 1 349 93 0 0 chrX 30882802 30882856 -146091284 + MADE1 DNA Mariner 27 80 0 230 0 0 32 chrX 30882988 30883019 -146091121 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 737 263 59 27 chrX 30884066 30884439 -146089701 - L1MC5 LINE L1 -48 7913 7529 893 120 0 54 chrX 30884621 30884805 -146089335 - L1MA7 LINE L1 -2 6289 6116 24 0 0 0 chrX 30885273 30885297 -146088843 + AT_rich Low_complexity Low_complexity 1 24 0 667 199 14 0 chrX 30885354 30885500 -146088640 - MLT1A2 LTR MaLR -8 366 219 301 325 0 0 chrX 30885786 30885906 -146088234 - L1P LINE L1 -1126 5020 4901 2430 210 33 18 chrX 30885931 30886720 -146087420 + L1MC4 LINE L1 6941 7893 -149 266 146 18 0 chrX 30886732 30886787 -146087353 + L1MC4 LINE L1 7986 8041 -1 4013 154 33 29 chrX 30886969 30887527 -146086613 + L1MA9 LINE L1 4509 5064 -1248 216 0 0 0 chrX 30887527 30887551 -146086589 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4013 154 33 29 chrX 30887551 30888510 -146085630 + L1MA9 LINE L1 5064 6041 -271 802 175 0 0 chrX 30889315 30889441 -146084699 - FLAM_C SINE Alu -7 126 1 290 299 0 23 chrX 30890772 30890859 -146083281 + L2 LINE L2 3188 3272 0 695 353 90 21 chrX 30891045 30891422 -146082718 + L2 LINE L2 2869 3271 -1 448 186 12 23 chrX 30891524 30891610 -146082530 + MER5A DNA MER1_type 10 94 -95 1230 197 182 3 chrX 30892075 30892410 -146081730 - MSTD LTR MaLR -1 395 1 285 29 0 0 chrX 30893388 30893422 -146080718 + (TTTTC)n Simple_repeat Simple_repeat 3 36 0 293 248 248 16 chrX 30893446 30893571 -146080569 + MIR SINE MIR 109 262 0 221 171 0 0 chrX 30893919 30893960 -146080180 + (CAGG)n Simple_repeat Simple_repeat 4 44 0 188 35 35 0 chrX 30896083 30896112 -146078028 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 421 331 104 19 chrX 30896292 30896637 -146077503 - L2 LINE L2 -190 3082 2718 1210 192 77 0 chrX 30897800 30897878 -146076262 + AluJo SINE Alu 39 110 -202 342 0 0 0 chrX 30897878 30897916 -146076224 + (CA)n Simple_repeat Simple_repeat 1 38 0 1210 192 77 0 chrX 30897916 30898071 -146076069 + AluJo SINE Alu 110 290 -22 433 305 68 16 chrX 30898083 30898273 -146075867 + MIR SINE MIR 22 221 -41 37 23 0 0 chrX 30898731 30898775 -146075365 + AT_rich Low_complexity Low_complexity 1 44 0 971 230 102 17 chrX 30899106 30899341 -146074799 + MIR SINE MIR 8 262 0 218 296 114 0 chrX 30899700 30899788 -146074352 + MIR3 SINE MIR 2 99 -109 348 248 92 18 chrX 30899798 30899907 -146074233 + L1ME4a LINE L1 5993 6109 -12 2070 120 0 3 chrX 30900065 30900378 -146073762 + AluSx SINE Alu 1 312 0 2302 83 0 0 chrX 30902350 30902652 -146071488 + AluSc SINE Alu 1 302 -7 262 222 60 34 chrX 30903390 30903507 -146070633 - L1ME4a LINE L1 -9 6112 5993 558 275 150 4 chrX 30903587 30903867 -146070273 - L1ME4a LINE L1 -254 5867 5547 325 238 48 12 chrX 30904635 30904719 -146069421 - L2 LINE L2 0 3313 3227 642 275 76 9 chrX 30905063 30905362 -146068778 + LTR16A LTR ERVL 66 439 -11 2411 86 0 0 chrX 30905500 30905803 -146068337 - AluY SINE Alu 0 311 9 256 309 55 50 chrX 30906285 30906505 -146067635 - L2 LINE L2 -2239 1075 855 228 208 104 0 chrX 30907362 30907410 -146066730 - L2 LINE L2 -6 3266 3214 261 57 0 0 chrX 30907434 30907469 -146066671 + (CA)n Simple_repeat Simple_repeat 2 36 0 708 230 106 18 chrX 30909232 30909458 -146064682 + LTR16C LTR ERVL 91 336 -155 2091 124 9 0 chrX 30909577 30909908 -146064232 - L1MB3 LINE L1 -1 6182 5849 321 372 99 21 chrX 30910128 30910370 -146063770 + L2 LINE L2 2688 2948 -366 3159 162 12 18 chrX 30910730 30911330 -146062810 - L1MB7 LINE L1 -1 6183 5588 241 177 32 16 chrX 30911992 30912054 -146062086 + (TA)n Simple_repeat Simple_repeat 2 64 0 211 264 14 14 chrX 30912096 30912168 -146061972 + (TA)n Simple_repeat Simple_repeat 2 73 0 401 296 72 56 chrX 30912782 30913265 -146060875 - L1ME4a LINE L1 -97 6024 5534 270 0 0 0 chrX 30914438 30914468 -146059672 + (CA)n Simple_repeat Simple_repeat 2 31 0 3099 289 143 35 chrX 30915102 30916911 -146057229 - L2 LINE L2 -11 3302 1289 220 320 127 23 chrX 30917694 30917953 -146056187 - L2 LINE L2 -180 3092 2807 2146 101 4 0 chrX 30918845 30919122 -146055018 + AluSp SINE Alu 1 278 -35 702 35 0 0 chrX 30919123 30919208 -146054932 + (TC)n Simple_repeat Simple_repeat 2 86 0 297 0 0 0 chrX 30919207 30919240 -146054900 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 2628 136 21 23 chrX 30919413 30919847 -146054293 + Tigger2a DNA MER2_type 1 433 -1 2278 108 0 0 chrX 30919941 30920237 -146053903 + AluSx SINE Alu 1 296 -16 25 31 0 0 chrX 30920275 30920307 -146053833 + AT_rich Low_complexity Low_complexity 1 32 0 291 54 0 0 chrX 30920888 30920925 -146053215 + (CA)n Simple_repeat Simple_repeat 1 37 0 3284 68 5 0 chrX 30921642 30922068 -146052072 - L1PA8 LINE L1 -9 6163 5736 2497 156 26 13 chrX 30922362 30922823 -146051317 - MLT1C LTR MaLR 0 467 1 1732 60 0 9 chrX 30923027 30923245 -146050895 - AluY SINE Alu 0 311 96 463 49 0 0 chrX 30923245 30923306 -146050834 - AluY SINE Alu -249 61 1 404 256 15 118 chrX 30923748 30923951 -146050189 - L1MC4 LINE L1 -40 8002 7821 280 299 0 0 chrX 30924182 30924259 -146049881 - MIR SINE MIR -117 145 69 834 122 0 0 chrX 30924862 30924985 -146049155 + L1MA3 LINE L1 6183 6305 0 21 82 0 0 chrX 30925102 30925151 -146048989 + AT_rich Low_complexity Low_complexity 1 49 0 427 296 143 25 chrX 30926143 30926346 -146047794 + MIR SINE MIR 36 262 0 225 159 91 0 chrX 30926558 30926602 -146047538 - L2 LINE L2 -4 3268 3221 427 237 17 172 chrX 30926663 30926895 -146047245 + MER91A DNA MER1_type 1 196 0 832 204 168 5 chrX 30926979 30927175 -146046965 + MIR SINE MIR 32 259 -3 2052 111 0 3 chrX 30927494 30927817 -146046323 + AluSx SINE Alu 24 312 0 539 260 141 6 chrX 30928726 30928903 -146045237 + MIR SINE MIR 12 212 -50 2230 94 0 3 chrX 30928957 30929263 -146044877 - AluSx SINE Alu 0 305 1 571 285 172 5 chrX 30930712 30930898 -146043242 + MIR SINE MIR 1 217 -45 2298 188 54 51 chrX 30931313 30931865 -146042275 - MLT2B3 LTR ERVL 0 554 1 489 47 0 0 chrX 30932903 30932967 -146041173 + (TG)n Simple_repeat Simple_repeat 1 64 0 22 0 0 0 chrX 30933099 30933121 -146041019 + AT_rich Low_complexity Low_complexity 1 22 0 5374 139 34 30 chrX 30933121 30934907 -146039233 - L1MA7 LINE L1 0 6291 4498 263 297 30 0 chrX 30935167 30935268 -146038872 - Tigger8 DNA MER2_type -100 566 463 264 26 26 0 chrX 30935268 30935307 -146038833 - L1PA7 LINE L1 -5 6149 6110 * 3718 94 4 20 chrX 30935290 30935833 -146038307 - L1P3 LINE L1 -5924 537 4 240 209 0 0 chrX 30935885 30935928 -146038212 - L2 LINE L2 -10 3303 3261 235 342 56 82 chrX 30936905 30937101 -146037039 - MIR3 SINE MIR -1 207 17 195 162 0 0 chrX 30937117 30937154 -146036986 + GA-rich Low_complexity Low_complexity 3 39 0 2145 178 0 5 chrX 30937253 30937635 -146036505 + MLT1B LTR MaLR 1 380 -10 24 0 0 0 chrX 30938548 30938572 -146035568 + AT_rich Low_complexity Low_complexity 1 24 0 204 190 17 17 chrX 30938610 30938668 -146035472 + (TTA)n Simple_repeat Simple_repeat 1 58 0 376 160 7 43 chrX 30938682 30938972 -146035168 + (TA)n Simple_repeat Simple_repeat 1 279 0 28600 94 26 10 chrX 30938995 30944583 -146029557 - L1PA7 LINE L1 -15 6454 742 760 177 0 34 chrX 30944730 30944877 -146029263 - FLAM_C SINE Alu 0 143 2 1235 241 138 0 chrX 30945750 30946098 -146028042 - MSTD LTR MaLR 0 396 1 243 171 186 57 chrX 30946571 30946641 -146027499 + MSTD LTR MaLR 174 252 -144 * 342 276 39 31 chrX 30946639 30946766 -146027374 - MLT1H LTR MaLR -29 520 393 1045 165 6 6 chrX 30946771 30946953 -146027187 - MER58A DNA MER1_type -1 223 42 231 233 0 0 chrX 30947002 30947045 -146027095 - MLT1H LTR MaLR -195 354 312 306 260 13 0 chrX 30947090 30947167 -146026973 - MLT1H LTR MaLR -392 157 80 608 309 15 10 chrX 30947957 30948161 -146025979 - MIR SINE MIR -17 245 41 1810 144 11 107 chrX 30948710 30949092 -146025048 + Tigger3(Golem) DNA MER2_type 1 3025 -4 289 267 233 0 chrX 30949301 30949391 -146024749 + MIR SINE MIR 20 130 -132 1195 171 6 124 chrX 30949493 30949849 -146024291 + MLT1D LTR MaLR 1 314 -191 1003 175 6 129 chrX 30949847 30950173 -146023967 - MLT1D LTR MaLR -148 357 72 * 298 266 7 58 chrX 30950340 30950494 -146023646 - L2 LINE L2 -158 3155 3010 586 186 86 43 chrX 30950913 30951053 -146023087 + L2 LINE L2 3168 3313 0 1381 215 95 44 chrX 30951419 30951829 -146022311 + MER74A LTR ERVL 1 431 -127 2965 132 36 7 chrX 30952244 30952830 -146021310 + L1M2 LINE L1 5199 5801 -511 2574 193 2 4 chrX 30952814 30953359 -146020781 + L1P LINE L1 4397 4940 -1206 * 1320 129 0 30 chrX 30953361 30953563 -146020577 + AluSg/x SINE Alu 100 295 -17 1015 138 144 0 chrX 30953579 30953746 -146020394 - AluSx SINE Alu -87 225 35 565 147 0 0 chrX 30953746 30953841 -146020299 - L1P LINE L1 -1161 4985 4891 237 289 87 0 chrX 30953986 30954090 -146020050 + L2 LINE L2 2972 3084 -188 716 247 50 0 chrX 30954507 30954726 -146019414 + L1M4 LINE L1 4896 5125 -1021 424 228 9 18 chrX 30954968 30955082 -146019058 + L1MC4 LINE L1 7777 7889 -153 253 224 26 13 chrX 30955083 30955159 -146018981 + (TA)n Simple_repeat Simple_repeat 2 78 0 455 241 54 24 chrX 30955199 30955365 -146018775 + L1MC4 LINE L1 7853 8023 -19 210 363 32 38 chrX 30955403 30955560 -146018580 - L3 LINE CR1 -210 1367 1212 184 280 243 9 chrX 30956846 30956953 -146017187 + MIR3 SINE MIR 59 190 -18 361 324 0 0 chrX 30957421 30957523 -146016617 + MIR SINE MIR 48 149 -113 1680 160 15 0 chrX 30957543 30957812 -146016328 + AluJo SINE Alu 9 281 -31 193 423 21 10 chrX 30958868 30958965 -146015175 - MIR SINE MIR -78 130 33 1080 179 19 19 chrX 30959159 30959422 -146014718 + MER33 DNA MER1_type 62 324 0 2289 117 3 0 chrX 30960111 30960418 -146013722 - AluSx SINE Alu -4 308 1 897 232 11 76 chrX 30960676 30960939 -146013201 - MIR SINE MIR 0 262 17 211 292 0 0 chrX 30961133 30961181 -146012959 + MIR3 SINE MIR 133 180 -28 294 265 69 0 chrX 30961669 30961771 -146012369 + MIR SINE MIR 130 238 -24 359 83 17 0 chrX 30961802 30961862 -146012278 + (TTTTG)n Simple_repeat Simple_repeat 1 61 0 535 165 82 0 chrX 30961865 30961962 -146012178 - FLAM_A SINE Alu -37 105 1 229 371 76 0 chrX 30962488 30962593 -146011547 + L2 LINE L2 3133 3245 -27 597 289 61 2 chrX 30962743 30963020 -146011120 - LTR16A LTR ERVL 0 450 92 306 374 49 0 chrX 30964460 30964623 -146009517 + MIR3 SINE MIR 36 206 -2 504 308 8 0 chrX 30967238 30967358 -146006782 + MER5B DNA MER1_type 58 178 0 195 42 0 0 chrX 30967523 30967547 -146006593 + (A)n Simple_repeat Simple_repeat 1 24 0 1760 158 7 11 chrX 30968196 30968504 -146005636 + AluJo SINE Alu 1 307 0 443 369 45 29 chrX 30968608 30968917 -146005223 + L3 LINE CR1 64 377 -1200 1195 168 0 0 chrX 30969047 30969220 -146004920 - FAM SINE Alu -2 173 1 312 316 28 42 chrX 30969866 30970081 -146004059 + L2 LINE L2 2764 2975 -339 288 0 0 0 chrX 30970192 30970224 -146003916 + (CA)n Simple_repeat Simple_repeat 2 33 0 506 255 153 0 chrX 30970413 30970570 -146003570 - MER5A DNA MER1_type 0 189 9 642 251 29 29 chrX 30970658 30970865 -146003275 - MIR SINE MIR -49 213 7 354 241 9 71 chrX 30971525 30971637 -146002503 + L2 LINE L2 3197 3301 -12 435 317 96 29 chrX 30972349 30972557 -146001583 - MIR SINE MIR -14 248 27 351 268 140 30 chrX 30973095 30973259 -146000881 + MIR SINE MIR 63 244 -18 546 324 0 28 chrX 30977242 30977421 -145996719 + MIR3 SINE MIR 17 190 -18 849 242 88 48 chrX 30978094 30978552 -145995588 + L1MC4a LINE L1 5351 5813 -308 30 27 0 0 chrX 30978826 30978863 -145995277 + AT_rich Low_complexity Low_complexity 1 37 0 226 301 54 21 chrX 30980256 30980349 -145993791 - L2 LINE L2 -9 3304 3209 22 35 0 0 chrX 30980549 30980578 -145993562 + AT_rich Low_complexity Low_complexity 1 29 0 540 254 28 7 chrX 30981775 30981917 -145992223 + MIR3 SINE MIR 58 202 -6 1738 181 0 13 chrX 30982197 30982528 -145991612 + AluJb SINE Alu 1 327 0 232 45 0 68 chrX 30985871 30985915 -145988225 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 307 302 78 35 chrX 30988214 30988330 -145985810 + L2 LINE L2 3151 3271 -1 25 31 0 0 chrX 30988750 30988782 -145985358 + AT_rich Low_complexity Low_complexity 1 32 0 447 68 0 0 chrX 30990526 30990585 -145983555 + (GA)n Simple_repeat Simple_repeat 2 60 0 455 181 7 138 chrX 30993191 30993329 -145980811 + LTR67 LTR ERVL 431 550 -7 715 285 39 27 chrX 30993656 30993912 -145980228 - MIR SINE MIR -2 260 2 283 309 10 10 chrX 30994554 30994651 -145979489 - L2 LINE L2 -12 3301 3205 571 234 140 38 chrX 30994707 30994972 -145979168 - MLT1L LTR MaLR -50 565 274 921 295 182 33 chrX 30994973 30995556 -145978584 - L2 LINE L2 -620 2694 2025 429 248 20 10 chrX 30995671 30995772 -145978368 + MER5B DNA MER1_type 38 139 -39 7077 135 8 22 chrX 30995774 30997026 -145977114 + L1MC1 LINE L1 5097 6331 -2 186 43 0 0 chrX 30997026 30997049 -145977091 + (CA)n Simple_repeat Simple_repeat 2 24 0 2924 9 0 9 chrX 30997272 30997593 -145976547 - AluYb8 SINE Alu 0 318 1 199 324 44 0 chrX 30998185 30998253 -145975887 + L2 LINE L2 1953 2023 -1291 259 333 39 8 chrX 30998547 30998676 -145975464 + MIR SINE MIR 60 192 -70 5649 121 45 26 chrX 30999432 30999797 -145974343 + L1PA16 LINE L1 5111 5468 -698 2302 82 0 26 chrX 30999797 31000100 -145974040 + AluSp SINE Alu 1 295 -18 5649 121 45 26 chrX 31000100 31000764 -145973376 + L1PA16 LINE L1 5468 6157 -9 1456 156 33 16 chrX 31000799 31001043 -145973097 + AluJo SINE Alu 40 287 -25 1186 267 220 29 chrX 31002000 31002837 -145971303 - L2 LINE L2 -3 3310 2339 1077 272 96 20 chrX 31003483 31003888 -145970252 - L2 LINE L2 -725 2589 2154 22 0 0 0 chrX 31004248 31004270 -145969870 + AT_rich Low_complexity Low_complexity 1 22 0 5720 42 8 0 chrX 31004788 31005438 -145968702 + L1PA5 LINE L1 5495 6149 -5 21 36 0 0 chrX 31005444 31005472 -145968668 + AT_rich Low_complexity Low_complexity 1 28 0 403 280 156 46 chrX 31005609 31005955 -145968185 + MLT1J2 LTR MaLR 67 450 0 1091 234 174 24 chrX 31006092 31006425 -145967715 - MLT1G3 LTR MaLR -4 526 144 3115 177 42 31 chrX 31006846 31007340 -145966800 + MLT2B3 LTR ERVL 2 504 -50 213 39 0 0 chrX 31007340 31007366 -145966774 + (TC)n Simple_repeat Simple_repeat 2 27 0 3115 177 42 31 chrX 31007366 31007418 -145966722 + MLT2B3 LTR ERVL 504 554 0 594 272 42 33 chrX 31007553 31007766 -145966374 + LTR16A1 LTR ERVL 157 371 -86 894 169 114 45 chrX 31007767 31007968 -145966172 - AluJb SINE Alu -11 301 87 400 288 68 52 chrX 31008365 31008765 -145965375 + L1ME4a LINE L1 3595 4000 -2146 288 312 83 32 chrX 31009061 31009471 -145964669 + L1ME4a LINE L1 4397 4827 -1319 22 0 0 0 chrX 31009524 31009546 -145964594 + AT_rich Low_complexity Low_complexity 1 22 0 3115 177 42 31 chrX 31009655 31009707 -145964433 - MLT2B3 LTR ERVL 0 554 504 231 36 0 0 chrX 31009707 31009735 -145964405 + (GA)n Simple_repeat Simple_repeat 2 29 0 3115 177 42 31 chrX 31009735 31010229 -145963911 - MLT2B3 LTR ERVL -50 504 2 225 0 0 0 chrX 31010645 31010670 -145963470 + (TC)n Simple_repeat Simple_repeat 1 25 0 1050 215 188 27 chrX 31010680 31010978 -145963162 + MLT1G3 LTR MaLR 170 515 -15 * 1427 181 26 26 chrX 31010974 31011240 -145962900 - MSTD LTR MaLR -128 268 3 2463 78 0 3 chrX 31011270 31011578 -145962562 + AluY SINE Alu 1 307 -4 21 0 0 0 chrX 31011751 31011772 -145962368 + AT_rich Low_complexity Low_complexity 1 21 0 631 268 89 43 chrX 31011840 31012209 -145961931 + L1ME4a LINE L1 5391 5776 -345 6519 36 0 1 chrX 31012297 31013055 -145961085 - L1PA5 LINE L1 -6 6148 5392 449 223 165 33 chrX 31013086 31013359 -145960781 + L1ME4a LINE L1 5808 6116 -5 354 200 15 0 chrX 31013879 31013944 -145960196 - L2 LINE L2 0 3313 3248 2375 131 78 0 chrX 31014011 31014371 -145959769 + MLT1B LTR MaLR 3 390 0 2017 135 29 48 chrX 31014730 31015108 -145959032 - THE1C LTR MaLR 0 375 5 31 0 0 0 chrX 31015465 31015496 -145958644 + AT_rich Low_complexity Low_complexity 1 31 0 256 336 44 0 chrX 31016579 31016692 -145957448 + L2 LINE L2 1918 2035 -1279 2327 72 3 0 chrX 31017676 31017969 -145956171 - AluY SINE Alu -17 294 1 1045 123 0 0 chrX 31019047 31019201 -145954939 + L1MC1 LINE L1 6180 6333 0 1275 165 27 0 chrX 31019242 31019466 -145954674 + L1MB5 LINE L1 5945 6174 0 2085 161 129 19 chrX 31019644 31020072 -145954068 + MLT2B1 LTR ERVL 1 485 -35 315 0 0 0 chrX 31020072 31020107 -145954033 + (TG)n Simple_repeat Simple_repeat 2 36 0 2085 161 129 19 chrX 31020107 31020143 -145953997 + MLT2B1 LTR ERVL 485 516 -4 237 33 0 0 chrX 31021519 31021549 -145952591 + (CA)n Simple_repeat Simple_repeat 1 30 0 1064 212 135 50 chrX 31022210 31022611 -145951529 - MLT1D LTR MaLR -2 503 100 1392 194 83 17 chrX 31022611 31022971 -145951169 - MER45B DNA AcHobo 0 1040 657 371 167 15 0 chrX 31022970 31023036 -145951104 - MLT1D LTR MaLR -427 78 12 * 232 296 0 28 chrX 31023109 31023180 -145950960 - MLT1H1 LTR MaLR -299 256 188 231 214 36 48 chrX 31023279 31023363 -145950777 - MLT1H1 LTR MaLR -459 83 1 5535 160 19 35 chrX 31023468 31024619 -145949521 + L1MA7 LINE L1 4195 5363 -928 1907 159 91 3 chrX 31024619 31024983 -145949157 + MSTD LTR MaLR 1 396 0 5535 160 19 35 chrX 31024983 31025816 -145948324 + L1MA7 LINE L1 5363 6159 -132 424 70 12 58 chrX 31025816 31025890 -145948250 + L1PB2 LINE L1 6065 6146 -5 5535 160 19 35 chrX 31025890 31025902 -145948238 + L1MA7 LINE L1 6159 6170 -121 2255 102 0 16 chrX 31025907 31026222 -145947918 + AluSg SINE Alu 1 310 0 735 112 0 16 chrX 31026383 31026508 -145947632 + L1MA7 LINE L1 6165 6287 -4 6139 95 49 2 chrX 31026538 31027701 -145946439 - L1PA13 LINE L1 0 6163 4980 489 258 213 13 chrX 31027778 31028003 -145946137 - MLT1J LTR MaLR -241 270 1 1906 179 21 74 chrX 31028461 31028986 -145945154 - MLT1D LTR MaLR -8 497 1 696 144 0 0 chrX 31030977 31031102 -145943038 + L1P LINE L1 4728 4852 -1294 1686 147 68 49 chrX 31031124 31031492 -145942648 + THE1C LTR MaLR 1 375 0 344 343 66 15 chrX 31031678 31031815 -145942325 - L2 LINE L2 -610 2704 2561 503 291 124 12 chrX 31032184 31032442 -145941698 + LTR16A1 LTR ERVL 171 457 0 363 298 146 22 chrX 31032662 31032840 -145941300 + MIR SINE MIR 63 262 0 2529 50 3 3 chrX 31032859 31033159 -145940981 + AluY SINE Alu 1 300 -11 5310 188 27 4 chrX 31035500 31036513 -145937627 - MER45B DNA AcHobo -4 1036 1 3234 105 58 12 chrX 31037001 31037517 -145936623 - L1MB2 LINE L1 -3 6168 5629 504 319 12 24 chrX 31038042 31038208 -145935932 - MIR3 SINE MIR 0 208 45 651 290 40 10 chrX 31039778 31039978 -145934162 - MIR SINE MIR -40 222 17 562 264 162 8 chrX 31041357 31041554 -145932586 + MIR SINE MIR 37 262 0 33 25 0 0 chrX 31042322 31042362 -145931778 + AT_rich Low_complexity Low_complexity 1 40 0 416 316 50 62 chrX 31042521 31042879 -145931261 + MLT1K LTR MaLR 25 378 -210 384 326 57 21 chrX 31043386 31043579 -145930561 + MIR SINE MIR 51 250 -12 273 57 0 0 chrX 31043583 31043618 -145930522 + (CAT)n Simple_repeat Simple_repeat 1 35 0 2225 60 0 0 chrX 31043800 31044067 -145930073 - AluY SINE Alu -1 310 44 2098 175 37 3 chrX 31044166 31044543 -145929597 + MLT1B LTR MaLR 1 390 0 2320 85 0 25 chrX 31045872 31046190 -145927950 - AluSg SINE Alu 0 310 1 217 225 0 0 chrX 31046298 31046338 -145927802 + (CAG)n Simple_repeat Simple_repeat 3 42 0 285 29 0 0 chrX 31048857 31048891 -145925249 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1015 137 69 0 chrX 31049129 31049304 -145924836 + MER5A DNA MER1_type 3 189 0 200 370 0 19 chrX 31050462 31050516 -145923624 + L2 LINE L2 3129 3181 -91 965 216 127 94 chrX 31050885 31051459 -145922681 - MLT1G1 LTR MaLR 0 595 3 207 0 0 0 chrX 31052181 31052204 -145921936 + (A)n Simple_repeat Simple_repeat 1 23 0 1693 189 14 30 chrX 31053937 31054307 -145919833 + MLT1A1 LTR MaLR 2 365 0 333 0 0 0 chrX 31055240 31055277 -145918863 + (CA)n Simple_repeat Simple_repeat 2 38 0 735 299 93 29 chrX 31056610 31057095 -145917045 + LTR33 LTR ERVL 6 521 0 223 343 91 21 chrX 31058192 31058335 -145915805 + MIR3 SINE MIR 31 183 -25 296 227 11 45 chrX 31058423 31058511 -145915629 - MLT1H LTR MaLR -32 517 433 624 272 28 70 chrX 31058524 31058811 -145915329 - MLT1H LTR MaLR -223 326 52 1720 244 53 41 chrX 31060655 31061168 -145912972 - MLT1E LTR MaLR 0 593 75 515 291 153 15 chrX 31061269 31061602 -145912538 - MARNA DNA Mariner -44 542 164 3325 72 5 0 chrX 31062348 31062793 -145911347 + MER41A LTR ERV1 1 447 -107 6061 130 4 5 chrX 31062805 31064229 -145909911 - L1PB1 LINE L1 -3 6148 4726 670 75 0 0 chrX 31064229 31064322 -145909818 + MER41B LTR ERV1 543 635 0 259 207 139 48 chrX 31064913 31065017 -145909123 + MLT1H LTR MaLR 436 590 0 1060 243 127 26 chrX 31065393 31065850 -145908290 + LTR33 LTR ERVL 3 505 -16 1716 153 21 28 chrX 31066032 31066314 -145907826 + AluJb SINE Alu 1 280 -32 450 154 0 0 chrX 31067216 31067294 -145906846 + GA-rich Low_complexity Low_complexity 3 80 0 2050 100 0 4 chrX 31067488 31067768 -145906372 - AluY SINE Alu -6 305 27 22 0 0 0 chrX 31067844 31067866 -145906274 + AT_rich Low_complexity Low_complexity 1 22 0 15381 81 21 14 chrX 31068145 31070872 -145903268 - L1PA7 LINE L1 -233 5921 3173 1839 64 0 0 chrX 31070872 31071089 -145903051 + L1PA7 LINE L1 5931 6150 -4 1111 158 23 56 chrX 31071135 31071350 -145902790 + AluJo SINE Alu 85 292 -20 884 218 32 11 chrX 31072652 31072840 -145901300 + MER63A DNA MER1_type 1 192 -18 591 324 107 28 chrX 31072940 31073258 -145900882 + L2 LINE L2 2925 3267 -5 476 373 22 4 chrX 31073453 31073681 -145900459 + MIR SINE MIR 29 260 -2 202 299 10 31 chrX 31073981 31074078 -145900062 + CT-rich Low_complexity Low_complexity 3 97 0 745 299 37 0 chrX 31075327 31075514 -145898626 + MER91A DNA MER1_type 2 195 -1 2768 99 23 3 chrX 31075557 31075941 -145898199 + L1PA11 LINE L1 5783 6174 0 22 0 0 0 chrX 31077047 31077069 -145897071 + AT_rich Low_complexity Low_complexity 1 22 0 3533 175 12 3 chrX 31077070 31077671 -145896469 - L1MB2 LINE L1 -9 6162 5557 1994 113 11 11 chrX 31077698 31077982 -145896158 - AluSx SINE Alu -28 284 1 255 291 92 7 chrX 31078094 31078235 -145895905 - L1MC5 LINE L1 -37 7924 7772 26 0 0 0 chrX 31078284 31078310 -145895830 + AT_rich Low_complexity Low_complexity 1 26 0 35 54 0 0 chrX 31082395 31082451 -145891689 + AT_rich Low_complexity Low_complexity 1 56 0 5449 50 2 2 chrX 31082503 31083126 -145891014 - L1PA6 LINE L1 -5 6149 5527 235 250 95 69 chrX 31083464 31083580 -145890560 + L2 LINE L2 3194 3312 -1 323 222 0 93 chrX 31083617 31083725 -145890415 + MIR SINE MIR 139 236 -26 544 314 49 12 chrX 31083920 31084125 -145890015 + MIR SINE MIR 5 222 -40 2477 174 40 26 chrX 31084125 31084366 -145889774 - MSTB LTR MaLR 0 426 174 2377 74 0 0 chrX 31084366 31084691 -145889449 + AluY SINE Alu 1 325 0 2477 174 40 26 chrX 31084691 31084868 -145889272 - MSTB LTR MaLR -252 174 1 544 314 49 12 chrX 31084868 31084907 -145889233 + MIR SINE MIR 222 258 -4 253 304 64 16 chrX 31085296 31085421 -145888719 - MLT1H LTR MaLR -396 153 23 441 257 54 124 chrX 31085426 31085667 -145888473 + L2 LINE L2 3037 3260 -12 623 165 0 0 chrX 31087058 31087159 -145886981 - MER5A DNA MER1_type -84 105 5 2564 131 116 0 chrX 31087542 31087946 -145886194 - LTR47A LTR ERVL -1 451 1 26 0 0 0 chrX 31088245 31088271 -145885869 + AT_rich Low_complexity Low_complexity 1 26 0 221 129 0 81 chrX 31089169 31089231 -145884909 + (TGGGGG)n Simple_repeat Simple_repeat 4 60 0 284 336 44 0 chrX 31089725 31089838 -145884302 - L2 LINE L2 -1 3271 3154 830 193 122 54 chrX 31090741 31090763 -145883377 + Charlie7 DNA MER1_type 1597 1616 -996 1072 99 17 0 chrX 31090763 31090935 -145883205 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 2258 53 0 18 chrX 31090937 31091219 -145882921 - AluSc SINE Alu -32 277 1 830 193 122 54 chrX 31091219 31091488 -145882652 + Charlie7 DNA MER1_type 1616 1911 -701 3053 103 14 21 chrX 31091488 31091923 -145882217 + L1PA16 LINE L1 5735 6166 0 1161 220 129 46 chrX 31092809 31092994 -145881146 + Charlie7 DNA MER1_type 1898 2066 -546 2283 152 103 77 chrX 31092994 31093501 -145880639 + MLT2B1 LTR ERVL 1 520 0 1161 220 129 46 chrX 31093501 31093811 -145880329 + Charlie7 DNA MER1_type 2066 2434 -178 6915 182 13 11 chrX 31093820 31096302 -145877838 + L1MC1 LINE L1 3831 6316 -17 355 201 121 27 chrX 31096452 31096584 -145877556 + Charlie7 DNA MER1_type 2384 2533 -79 363 44 0 0 chrX 31096584 31096629 -145877511 + (TG)n Simple_repeat Simple_repeat 2 46 0 355 201 121 27 chrX 31096629 31096645 -145877495 + Charlie7 DNA MER1_type 2533 2546 -66 2243 94 0 0 chrX 31096650 31096936 -145877204 - AluSx SINE Alu -26 286 1 570 345 48 33 chrX 31097011 31097344 -145876796 - LTR16C LTR ERVL -9 482 145 2639 27 0 0 chrX 31097639 31097935 -145876205 - AluY SINE Alu -15 296 1 2173 92 17 3 chrX 31097935 31098229 -145875911 - L1PA15 LINE L1 0 6165 5868 421 265 73 64 chrX 31098246 31098470 -145875670 + MIR SINE MIR 29 249 -13 2543 200 80 29 chrX 31098806 31099535 -145874605 - L1MC5 LINE L1 -36 7925 7160 1706 166 8 0 chrX 31100303 31100562 -145873578 + Tigger7 DNA MER2_type 4 264 -2223 628 152 0 10 chrX 31100568 31100667 -145873473 + Tigger7 DNA MER2_type 2394 2491 0 723 211 103 16 chrX 31101003 31101197 -145872943 - MIR SINE MIR -44 218 8 196 270 48 0 chrX 31102045 31102108 -145872032 - L3b LINE CR1 -166 1417 1352 1579 182 44 32 chrX 31102678 31102710 -145871430 - MLT2B1 LTR ERVL -6 514 484 602 88 0 11 chrX 31102710 31102801 -145871339 + (TG)n Simple_repeat Simple_repeat 2 91 0 1579 182 44 32 chrX 31102801 31103230 -145870910 - MLT2B1 LTR ERVL -36 484 1 1362 226 26 26 chrX 31103676 31104016 -145870124 + L1ME2 LINE L1 5824 6163 -1 255 322 0 11 chrX 31104029 31104119 -145870021 + MIR SINE MIR 169 257 -5 5279 43 0 2 chrX 31104701 31105301 -145868839 - L1PA5 LINE L1 -2 6152 5554 497 219 0 31 chrX 31105414 31105510 -145868630 - MER5A DNA MER1_type -83 106 14 225 154 0 0 chrX 31105640 31105679 -145868461 + (CA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chrX 31106187 31106212 -145867928 + (GGA)n Simple_repeat Simple_repeat 1 25 0 394 306 43 48 chrX 31106397 31106583 -145867557 + MIR SINE MIR 7 191 -71 1492 147 0 14 chrX 31107505 31107723 -145866417 - AluJb SINE Alu -17 295 81 1183 221 32 98 chrX 31107724 31108195 -145865945 - HAL1 LINE L1 -1330 1177 738 536 178 11 0 chrX 31108461 31108551 -145865589 - MER5A DNA MER1_type -2 187 97 186 71 0 0 chrX 31108751 31108779 -145865361 + (CTTG)n Simple_repeat Simple_repeat 2 29 0 1960 101 0 89 chrX 31108779 31109095 -145865045 - AluSq SINE Alu -25 288 1 1025 158 44 6 chrX 31109161 31109344 -145864796 - L1PA16 LINE L1 -14 6152 5963 915 239 41 21 chrX 31109388 31109729 -145864411 + MLT1G LTR MaLR 45 437 -93 281 343 19 9 chrX 31109835 31109943 -145864197 + L2 LINE L2 3180 3288 -25 840 276 46 13 chrX 31110068 31110307 -145863833 + MIR SINE MIR 13 259 -3 344 229 138 28 chrX 31110584 31110693 -145863447 + MER5A DNA MER1_type 35 155 -34 211 195 24 0 chrX 31111332 31111373 -145862767 + CT-rich Low_complexity Low_complexity 4 45 0 191 36 36 0 chrX 31111373 31111401 -145862739 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 246 289 26 0 chrX 31111402 31111478 -145862662 - L2 LINE L2 -2 3270 3193 1174 115 0 0 chrX 31111834 31111990 -145862150 - AluSg/x SINE Alu -10 300 145 1039 173 20 25 chrX 31112273 31112470 -145861670 - MER20 DNA MER1_type -1 218 23 379 267 7 52 chrX 31112494 31112629 -145861511 - MER5B DNA MER1_type -14 164 36 2170 246 35 9 chrX 31113227 31113771 -145860369 + L1ME3A LINE L1 5610 6167 -3 27 0 0 0 chrX 31114893 31114920 -145859220 + AT_rich Low_complexity Low_complexity 1 27 0 181 352 84 0 chrX 31114920 31114991 -145859149 - L2 LINE L2 -50 3222 3146 234 158 0 0 chrX 31114995 31115033 -145859107 - MLT1G1 LTR MaLR -7 583 546 1721 183 45 66 chrX 31115064 31115442 -145858698 - MLT1A2 LTR MaLR -1 373 4 2337 128 12 52 chrX 31115455 31115860 -145858280 - MLT1B LTR MaLR -1 389 1 601 194 19 0 chrX 31115861 31115964 -145858176 + MER81 DNA DNA 10 114 0 978 276 60 82 chrX 31115971 31116492 -145857648 - MLT1G1 LTR MaLR -66 529 21 2506 126 34 3 chrX 31116499 31116880 -145857260 - L1MB2 LINE L1 -3 6168 5776 199 250 47 31 chrX 31117064 31117128 -145857012 - L2 LINE L2 -346 2967 2903 278 348 71 0 chrX 31117136 31117248 -145856892 - MER91C DNA MER1_type -20 120 1 613 285 128 25 chrX 31117625 31118075 -145856065 - L2 LINE L2 -104 3209 2720 243 203 51 0 chrX 31118512 31118571 -145855569 + LTR16C LTR ERVL 328 389 -102 890 313 50 18 chrX 31118666 31119005 -145855135 - L2 LINE L2 -591 2723 2374 186 234 0 21 chrX 31119008 31119055 -145855085 - L2 LINE L2 0 3313 3268 370 248 9 28 chrX 31119064 31119173 -145854967 + MER34 LTR ERV1 25 131 -411 402 261 86 46 chrX 31119333 31119418 -145854722 + MER34 LTR ERV1 353 433 -109 2343 82 10 0 chrX 31119418 31119711 -145854429 + AluSc SINE Alu 1 296 -13 402 261 86 46 chrX 31119711 31119892 -145854248 + MER34 LTR ERV1 433 542 0 180 324 155 28 chrX 31120042 31120184 -145853956 - L2 LINE L2 -215 3057 2898 226 325 55 59 chrX 31120325 31120596 -145853544 + L2 LINE L2 2896 3165 -107 209 108 40 122 chrX 31121366 31121440 -145852700 + A-rich Low_complexity Low_complexity 3 70 0 300 231 0 0 chrX 31121502 31121580 -145852560 + (TA)n Simple_repeat Simple_repeat 1 78 0 384 299 133 29 chrX 31122437 31122678 -145851462 + L3b LINE CR1 1165 1430 -153 250 243 252 0 chrX 31122847 31122954 -145851186 + MIR SINE MIR 17 150 -112 * 421 243 53 120 chrX 31122949 31123290 -145850850 - L2 LINE L2 -13 3300 2983 1594 187 59 41 chrX 31123291 31123750 -145850390 + MLT1C LTR MaLR 1 467 0 444 235 34 17 chrX 31123756 31123875 -145850265 - L2 LINE L2 -333 2980 2860 277 320 0 0 chrX 31123877 31123955 -145850185 - LTR16A LTR ERVL -313 137 60 1843 148 120 18 chrX 31123988 31124372 -145849768 + MSTA LTR MaLR 6 428 0 1189 279 91 8 chrX 31124407 31124790 -145849350 - L2 LINE L2 -668 2646 2232 2989 210 61 15 chrX 31124844 31125054 -145849086 - L1MC4 LINE L1 -743 5403 5204 2765 90 0 6 chrX 31125054 31125420 -145848720 - THE1B LTR MaLR 0 364 1 2989 210 61 15 chrX 31125420 31126354 -145847786 - L1MC4 LINE L1 -942 5204 4932 1901 136 43 54 chrX 31126354 31126723 -145847417 - MLT1A1 LTR MaLR 0 365 1 2989 210 61 15 chrX 31126723 31126755 -145847385 - L1MC4 LINE L1 -1214 4932 4903 1361 232 42 32 chrX 31126774 31127333 -145846807 - L1ME LINE L1 -4676 1785 945 317 277 42 35 chrX 31127414 31127624 -145846516 - L1ME LINE L1 -5585 945 730 276 367 25 10 chrX 31128048 31128244 -145845896 - L1ME LINE L1 -6308 232 34 867 224 142 12 chrX 31128348 31128594 -145845546 - L2 LINE L2 -1118 2196 1919 738 269 46 34 chrX 31128875 31129086 -145845054 + MIR SINE MIR 4 214 -42 282 299 16 118 chrX 31129591 31129778 -145844362 + MIR3 SINE MIR 17 184 -24 281 319 8 42 chrX 31129785 31129904 -145844236 - L2 LINE L2 -3 3269 3155 24 0 0 0 chrX 31130059 31130083 -145844057 + AT_rich Low_complexity Low_complexity 1 24 0 286 263 140 9 chrX 31131998 31132112 -145842028 + MIR3 SINE MIR 48 176 -32 955 182 16 5 chrX 31134074 31134261 -145839879 - MER5A DNA MER1_type 0 189 1 1411 259 71 17 chrX 31134442 31134905 -145839235 - LTR16C LTR ERVL -3 488 1 834 158 0 8 chrX 31136868 31136995 -145837145 + FLAM_A SINE Alu 2 127 -6 21 0 0 0 chrX 31136995 31137016 -145837124 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 31137048 31137070 -145837070 + AT_rich Low_complexity Low_complexity 1 22 0 973 167 15 61 chrX 31137634 31137832 -145836308 + MER5A DNA MER1_type 1 189 0 196 259 0 37 chrX 31138125 31138179 -145835961 + L2 LINE L2 3209 3260 -12 1609 180 0 30 chrX 31138241 31138566 -145835574 + AluJo SINE Alu 1 316 0 521 265 144 0 chrX 31138649 31138806 -145835334 - MER5A DNA MER1_type -3 186 4 241 244 343 50 chrX 31138814 31139015 -145835125 + L3 LINE CR1 1140 1399 -178 707 271 67 56 chrX 31139245 31139796 -145834344 - L1ME4a LINE L1 -70 6051 5497 2032 136 0 13 chrX 31140179 31140489 -145833651 - AluJb SINE Alu -6 306 1 815 205 19 0 chrX 31140630 31140791 -145833349 - FRAM SINE Alu -12 164 1 394 104 56 132 chrX 31140810 31140885 -145833255 - Charlie7 DNA MER1_type -191 2421 2361 1364 31 0 0 chrX 31140885 31141046 -145833094 - L1PA3 LINE L1 0 6155 5995 394 104 56 132 chrX 31141046 31141114 -145833026 - Charlie7 DNA MER1_type -251 2361 2289 1014 247 112 50 chrX 31141173 31141772 -145832368 - L1MC4 LINE L1 -1 8041 7406 2456 93 0 0 chrX 31141794 31142107 -145832033 + AluSp SINE Alu 1 313 0 3271 206 69 10 chrX 31142114 31143087 -145831053 - L1ME1 LINE L1 -4 6231 5195 363 173 316 0 chrX 31143092 31143225 -145830915 - L1ME1 LINE L1 -5269 1127 953 242 317 126 6 chrX 31143597 31143947 -145830193 - L1 LINE L1 -2034 4181 3790 524 273 62 8 chrX 31144043 31144171 -145829969 + MIR SINE MIR 7 141 -121 21 57 0 0 chrX 31144267 31144302 -145829838 + AT_rich Low_complexity Low_complexity 1 35 0 2303 85 3 19 chrX 31144345 31144661 -145829479 - AluSq SINE Alu -2 311 1 1932 207 131 9 chrX 31144863 31145413 -145828727 - L1ME1 LINE L1 -197 5969 5353 1232 224 88 5 chrX 31145409 31145784 -145828356 - L1ME1 LINE L1 -2017 4129 3724 * 557 169 45 11 chrX 31146117 31146274 -145827866 + L1MC4 LINE L1 7892 7995 0 2405 109 0 0 chrX 31146299 31146610 -145827530 + AluSx SINE Alu 1 311 -1 911 204 0 0 chrX 31146611 31146812 -145827328 - L1ME1 LINE L1 -2415 3731 3531 503 172 35 0 chrX 31146818 31146934 -145827206 - L1M4 LINE L1 -1471 4675 4556 2651 162 52 16 chrX 31147000 31147544 -145826596 - L1MD1 LINE L1 0 6311 5749 2383 205 94 9 chrX 31147545 31148600 -145825540 - L1MD1 LINE L1 -598 5713 4593 2113 171 51 2 chrX 31148615 31149029 -145825111 - L1MB5 LINE L1 -9 6165 5732 3885 258 59 31 chrX 31149066 31149162 -145824978 - L1MD1 LINE L1 -4754 1642 1550 2611 27 10 0 chrX 31149162 31149455 -145824685 - AluY SINE Alu -13 298 3 3885 258 59 31 chrX 31149455 31150922 -145823218 - L1MD1 LINE L1 -4846 1550 35 376 345 52 40 chrX 31151338 31151666 -145822474 + LTR16C LTR ERVL 150 481 -10 278 270 0 32 chrX 31151831 31151894 -145822246 - L2 LINE L2 -10 3262 3202 639 170 30 44 chrX 31152035 31152170 -145821970 - FLAM_C SINE Alu 0 133 1 428 245 108 22 chrX 31152184 31152323 -145821817 - MLT1E1 LTR MaLR -503 151 1 4330 249 59 15 chrX 31152323 31152929 -145821211 + L1ME LINE L1 534 1112 -5284 414 0 0 0 chrX 31152929 31152975 -145821165 + (CA)n Simple_repeat Simple_repeat 1 46 0 4330 249 59 15 chrX 31152975 31153092 -145821048 + L1ME LINE L1 1112 1222 -5174 2449 88 3 0 chrX 31153092 31153398 -145820742 + AluSq SINE Alu 1 307 -6 4330 249 59 15 chrX 31153398 31154168 -145819972 + L1ME LINE L1 1222 2094 -4302 242 216 0 0 chrX 31154180 31154231 -145819909 + MER34 LTR ERV1 25 75 -467 1272 225 3 39 chrX 31154318 31154652 -145819488 + L1ME LINE L1 3595 3916 -2299 4373 162 31 5 chrX 31154661 31155502 -145818638 + L1MB5 LINE L1 5312 6174 0 * 4640 204 37 41 chrX 31155501 31156879 -145817261 + L1ME LINE L1 3901 5272 -943 2116 22 15 0 chrX 31156878 31157150 -145816990 - L1PA4 LINE L1 -790 5356 5081 * 7163 19 0 0 chrX 31157150 31157976 -145816164 + L1PA4 LINE L1 5326 6153 -2 376 153 0 24 chrX 31157979 31158064 -145816076 + L1MDb LINE L1 1314 1396 -5013 279 226 5 21 chrX 31158069 31158203 -145815937 + L1ME LINE L1 5257 5392 -843 1763 170 39 12 chrX 31158203 31158538 -145815602 + MER2 DNA MER2_type 1 344 0 279 226 5 21 chrX 31158538 31158592 -145815548 + L1ME LINE L1 5392 5562 -673 2133 159 87 7 chrX 31158592 31159167 -145814973 - MER39 LTR ERV1 0 707 13 2372 134 14 21 chrX 31159167 31159481 -145814659 - MER41B LTR ERV1 0 635 323 1961 128 67 28 chrX 31159481 31159840 -145814300 - THE1C LTR MaLR -2 373 1 2372 134 14 21 chrX 31159840 31159943 -145814197 - MER41B LTR ERV1 -312 323 221 2321 59 0 0 chrX 31159943 31160232 -145813908 - L1PA5 LINE L1 -2 6152 5864 1509 113 4 0 chrX 31160251 31160482 -145813658 - MER41B LTR ERV1 -403 232 1 465 130 122 26 chrX 31160575 31160690 -145813450 + L1MA10 LINE L1 6207 6332 -2 1048 312 133 20 chrX 31160724 31161377 -145812763 + L2 LINE L2 2157 2883 -431 294 95 0 0 chrX 31165283 31165325 -145808815 + (TG)n Simple_repeat Simple_repeat 2 43 0 1858 157 10 16 chrX 31166573 31166878 -145807262 - AluSx SINE Alu -1 311 9 222 258 15 15 chrX 31167020 31167086 -145807054 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 451 339 108 34 chrX 31167243 31167849 -145806291 - L2 LINE L2 -156 3116 2465 2473 146 29 54 chrX 31167849 31168328 -145805812 + MLT1C LTR MaLR 1 467 0 451 339 108 34 chrX 31168328 31168363 -145805777 - L2 LINE L2 -807 2465 2434 2268 174 67 14 chrX 31168380 31168816 -145805324 - MLT1C LTR MaLR -2 465 7 245 365 45 36 chrX 31168863 31169085 -145805055 - L2 LINE L2 -922 2392 2169 827 280 4 25 chrX 31169208 31169451 -145804689 - MIR SINE MIR -3 259 22 279 0 0 0 chrX 31169794 31169825 -145804315 + (CA)n Simple_repeat Simple_repeat 2 32 0 1345 264 59 70 chrX 31171175 31171488 -145802652 + LTR16C LTR ERVL 1 316 -175 1642 174 3 11 chrX 31171488 31171770 -145802370 + AluJo SINE Alu 1 280 -32 234 0 0 0 chrX 31171771 31171797 -145802343 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 1345 264 59 70 chrX 31171797 31171969 -145802171 + LTR16C LTR ERVL 315 483 -8 266 253 89 13 chrX 31173467 31173546 -145800594 + MIR SINE MIR 106 190 -72 1227 245 103 56 chrX 31174433 31174919 -145799221 + LTR33 LTR ERVL 1 509 -12 1016 248 38 0 chrX 31176099 31176337 -145797803 + LTR16A LTR ERVL 204 450 0 624 274 76 5 chrX 31176949 31177157 -145796983 - MIR SINE MIR 0 262 41 307 231 31 0 chrX 31177316 31177381 -145796759 - MER112 DNA MER1_type -21 239 173 409 211 62 43 chrX 31177423 31177584 -145796556 - MER112 DNA MER1_type -83 177 14 2180 116 0 7 chrX 31177708 31178002 -145796138 + AluSg SINE Alu 1 292 -18 21 0 0 0 chrX 31178005 31178026 -145796114 + AT_rich Low_complexity Low_complexity 1 21 0 1154 254 126 24 chrX 31178286 31178738 -145795402 - LTR33 LTR ERVL 0 521 24 433 275 99 0 chrX 31179048 31179179 -145794961 + MIR SINE MIR 118 261 -1 2182 117 0 0 chrX 31179209 31179491 -145794649 + AluSx SINE Alu 1 282 -30 184 301 130 88 chrX 31179623 31180008 -145794132 + L2 LINE L2 2829 3229 -43 370 209 6 69 chrX 31180062 31180174 -145793966 - MIR SINE MIR -93 115 5 23 33 0 0 chrX 31180893 31180923 -145793217 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chrX 31181099 31181124 -145793016 + AT_rich Low_complexity Low_complexity 1 25 0 464 260 49 16 chrX 31181233 31181356 -145792784 + L2 LINE L2 3176 3302 -11 384 264 176 7 chrX 31181580 31181853 -145792287 + L1ME4a LINE L1 5800 6118 -3 1824 233 119 41 chrX 31182691 31182799 -145791341 - L2 LINE L2 -465 2849 2751 2099 153 19 41 chrX 31182799 31183166 -145790974 + MLT1A1 LTR MaLR 5 363 -2 1824 233 119 41 chrX 31183166 31183689 -145790451 - L2 LINE L2 -563 2751 2169 1447 274 42 35 chrX 31183848 31184329 -145789811 + L2 LINE L2 2482 2965 -349 693 270 75 98 chrX 31184965 31185321 -145788819 + HAL1 LINE L1 39 382 -2125 2649 46 0 0 chrX 31185321 31185623 -145788517 + AluY SINE Alu 3 304 -7 693 270 75 98 chrX 31185623 31185758 -145788382 + HAL1 LINE L1 382 519 -1988 887 253 129 46 chrX 31185851 31186332 -145787808 + HAL1 LINE L1 626 1066 -1441 1914 144 16 16 chrX 31186332 31186644 -145787496 - AluJo SINE Alu 0 312 1 887 253 129 46 chrX 31186644 31186785 -145787355 + HAL1 LINE L1 1066 1194 -1313 282 56 0 0 chrX 31186785 31186821 -145787319 + (CA)n Simple_repeat Simple_repeat 2 37 0 887 253 129 46 chrX 31186821 31186903 -145787237 + HAL1 LINE L1 1194 1465 -1042 469 279 64 75 chrX 31186921 31187186 -145786954 + HAL1 LINE L1 2246 2507 0 800 279 88 30 chrX 31187700 31188062 -145786078 + MARNA DNA Mariner 191 573 -13 187 188 14 14 chrX 31188894 31188963 -145785177 + GA-rich Low_complexity Low_complexity 2 70 0 220 292 18 71 chrX 31189475 31189588 -145784552 - MIR SINE MIR -136 126 20 629 259 38 0 chrX 31191201 31191359 -145782781 - MIR SINE MIR -29 233 70 204 163 0 41 chrX 31191906 31191955 -145782185 + A-rich Low_complexity Low_complexity 3 49 0 276 354 54 40 chrX 31192215 31192438 -145781702 - L2 LINE L2 -536 2778 2553 549 353 4 13 chrX 31192506 31192741 -145781399 + MIR SINE MIR 1 233 -29 1406 98 0 44 chrX 31194987 31195190 -145778950 + AluSg/x SINE Alu 80 273 -39 360 0 0 0 chrX 31195198 31195238 -145778902 + (CA)n Simple_repeat Simple_repeat 1 40 0 722 214 195 14 chrX 31196968 31197183 -145776957 - MIR SINE MIR -3 259 6 1976 134 14 0 chrX 31197528 31197841 -145776299 + AluSx SINE Alu 1 312 0 1287 150 11 115 chrX 31197890 31198176 -145775964 + AluJo SINE Alu 40 295 -17 265 267 95 9 chrX 31198228 31198344 -145775796 + L1ME4a LINE L1 5901 6026 -95 2646 173 57 49 chrX 31199002 31199597 -145774543 - L1MB5 LINE L1 -8 6166 5567 301 370 8 24 chrX 31200952 31201079 -145773061 + MIR SINE MIR 20 144 -118 1241 242 57 84 chrX 31201103 31201509 -145772631 + L2 LINE L2 2667 3043 -270 2463 92 0 0 chrX 31201509 31201813 -145772327 + AluSq SINE Alu 1 304 -9 1241 242 57 84 chrX 31201813 31202076 -145772064 + L2 LINE L2 3043 3312 -1 209 293 37 0 chrX 31202079 31202161 -145771979 + MIR SINE MIR 178 262 0 1876 139 24 11 chrX 31202611 31202898 -145771242 - AluJo SINE Alu -19 293 3 1566 217 0 3 chrX 31203906 31204201 -145769939 + AluJo SINE Alu 3 296 -16 487 242 13 20 chrX 31204233 31204386 -145769754 - L1ME4a LINE L1 -11 6110 5959 437 315 24 18 chrX 31204490 31204655 -145769485 - L1ME4a LINE L1 -353 5768 5603 1348 159 0 13 chrX 31204655 31204881 -145769259 + AluJo SINE Alu 83 305 -7 1632 147 13 45 chrX 31205039 31205351 -145768789 - AluJo SINE Alu -10 302 1 2245 110 0 16 chrX 31205904 31206212 -145767928 + AluSx SINE Alu 1 303 -9 663 243 52 43 chrX 31206260 31206470 -145767670 - MIR SINE MIR 0 262 51 219 316 29 52 chrX 31206516 31206652 -145767488 - L2 LINE L2 -465 2849 2717 5141 156 58 1 chrX 31207712 31208300 -145765840 + MER6 DNA MER2_type 2 650 -215 2368 92 0 10 chrX 31208300 31208605 -145765535 - AluSq SINE Alu -11 302 1 5141 156 58 1 chrX 31208605 31208832 -145765308 + MER6 DNA MER2_type 650 863 -2 306 0 0 0 chrX 31209130 31209164 -145764976 + (TG)n Simple_repeat Simple_repeat 2 35 0 3740 107 42 29 chrX 31209947 31210544 -145763596 + MER4B LTR ERV1 6 610 0 214 139 56 0 chrX 31211052 31211088 -145763052 - MER91B DNA MER1_type -135 55 18 871 256 47 54 chrX 31212130 31212447 -145761693 + MLT1H LTR MaLR 40 354 -195 1844 175 0 6 chrX 31212971 31213285 -145760855 - AluJb SINE Alu 0 312 1 291 303 119 9 chrX 31213850 31213959 -145760181 - MIR SINE MIR -48 214 94 1059 215 22 18 chrX 31214003 31214226 -145759914 + MIR SINE MIR 38 261 -1 303 93 0 0 chrX 31214354 31214397 -145759743 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 232 385 0 0 chrX 31214675 31214758 -145759382 + L2 LINE L2 3189 3271 -1 21 71 0 0 chrX 31215205 31215247 -145758893 + AT_rich Low_complexity Low_complexity 1 42 0 285 326 51 60 chrX 31215803 31216018 -145758122 + L1MEd LINE L1 495 707 -5665 2611 155 29 7 chrX 31216107 31216520 -145757620 + MSTB LTR MaLR 1 422 -4 3090 208 78 4 chrX 31216616 31217285 -145756855 + L1MC4a LINE L1 6199 7274 0 361 255 91 83 chrX 31217342 31217745 -145756395 + L1MEd LINE L1 947 1439 -1304 327 278 121 5 chrX 31217745 31218066 -145756074 + L1MEd LINE L1 1263 1874 -869 534 274 123 34 chrX 31218095 31218566 -145755574 + L1MEd LINE L1 2974 3486 -2896 435 295 100 29 chrX 31218612 31218971 -145755169 + L1MEd LINE L1 3605 3983 -2399 402 234 177 42 chrX 31218974 31219254 -145754886 + L1MEd LINE L1 4240 4587 -1795 1755 110 12 0 chrX 31219254 31219508 -145754632 + AluSg1 SINE Alu 53 309 0 402 234 177 42 chrX 31219508 31219611 -145754529 + L1MEd LINE L1 4587 4675 -1707 1685 203 3 14 chrX 31220662 31220958 -145753182 - AluJo SINE Alu -19 293 1 5499 215 34 26 chrX 31221089 31223324 -145750816 + L1PA16 LINE L1 773 3082 -3121 5465 169 41 19 chrX 31223334 31224298 -145749842 + L1PA16 LINE L1 4103 5045 -1178 2153 130 3 0 chrX 31224298 31224598 -145749542 + AluSx SINE Alu 1 301 -11 5465 169 41 19 chrX 31224598 31224861 -145749279 + L1PA16 LINE L1 5045 5301 -922 234 0 0 0 chrX 31224861 31224887 -145749253 + (CAA)n Simple_repeat Simple_repeat 1 26 0 5465 169 41 19 chrX 31224887 31225710 -145748430 + L1PA16 LINE L1 5301 6203 -20 376 300 90 37 chrX 31225728 31226088 -145748052 + L1MEd LINE L1 4798 5215 -1167 603 0 0 0 chrX 31226088 31226155 -145747985 + (TG)n Simple_repeat Simple_repeat 2 68 0 376 300 90 37 chrX 31226155 31226375 -145747765 + L1MEd LINE L1 5215 5422 -960 * 4228 217 51 16 chrX 31226368 31226718 -145747422 + L1ME1 LINE L1 4115 4451 -1715 3329 115 36 31 chrX 31226718 31227241 -145746899 + MER1A DNA MER1_type 2 527 0 4228 217 51 16 chrX 31227241 31228315 -145745825 + L1ME1 LINE L1 4451 5582 -584 2273 112 3 0 chrX 31228315 31228610 -145745530 + AluSx SINE Alu 1 296 -16 2236 73 16 35 chrX 31228648 31228961 -145745179 + AluY SINE Alu 1 307 -4 2975 144 50 179 chrX 31228961 31229194 -145744946 + L1MCa LINE L1 100 362 -6064 665 189 0 0 chrX 31229194 31229305 -145744835 + FLAM_A SINE Alu 24 134 -8 2975 144 50 179 chrX 31229305 31229769 -145744371 + L1MCa LINE L1 362 728 -5698 2173 118 0 16 chrX 31229769 31230083 -145744057 - AluSx SINE Alu -3 309 1 2975 144 50 179 chrX 31230083 31230379 -145743761 + L1MCa LINE L1 728 1061 -5365 2774 133 37 55 chrX 31230380 31230998 -145743142 - MER4B LTR ERV1 0 779 1 3241 114 85 11 chrX 31230998 31231332 -145742808 + L1MCa LINE L1 1059 1367 -5059 200 57 0 29 chrX 31231332 31231367 -145742773 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3241 114 85 11 chrX 31231367 31231982 -145742158 + L1MCa LINE L1 1367 2183 -4243 1890 157 136 16 chrX 31231982 31232364 -145741776 + MSTA LTR MaLR 1 428 0 3241 114 85 11 chrX 31232364 31232416 -145741724 + L1MCa LINE L1 2183 2230 -4196 417 163 0 12 chrX 31232505 31232585 -145741555 + L1ME1 LINE L1 5578 5656 -510 389 237 64 4 chrX 31232602 31232767 -145741373 + L1ME1 LINE L1 5988 6184 0 1213 232 182 32 chrX 31233209 31233671 -145740469 - MLT1G LTR MaLR 0 590 60 6458 108 35 10 chrX 31233671 31235057 -145739083 + L1MA2 LINE L1 4879 6299 -5 548 242 16 0 chrX 31235077 31235201 -145738939 - MLT1G1 LTR MaLR -469 126 1 612 276 25 5 chrX 31235605 31235804 -145738336 + L1ME2 LINE L1 4945 5147 -999 * 2294 187 31 78 chrX 31235803 31236446 -145737694 + L1ME2 LINE L1 5542 6154 -10 23 54 0 0 chrX 31237076 31237113 -145737027 + AT_rich Low_complexity Low_complexity 1 37 0 792 283 129 27 chrX 31237323 31237694 -145736446 + MLT1I LTR MaLR 1 409 0 541 282 76 54 chrX 31237732 31238209 -145735931 - L1ME LINE L1 -302 5819 5317 238 306 36 22 chrX 31238878 31239100 -145735040 - L1ME LINE L1 -1705 4441 4217 461 286 75 0 chrX 31239327 31239488 -145734652 - Charlie8 DNA MER1_type -2153 264 92 1401 122 50 29 chrX 31239818 31240096 -145734044 - L1MA9 LINE L1 -5 6307 6024 895 269 57 73 chrX 31240107 31240638 -145733502 + LTR67 LTR ERVL 36 557 0 417 311 124 43 chrX 31241351 31241560 -145732580 - MIR SINE MIR -12 250 25 195 331 84 32 chrX 31241740 31241894 -145732246 - L2 LINE L2 -20 3252 3091 216 0 0 0 chrX 31241979 31242003 -145732137 + (CTG)n Simple_repeat Simple_repeat 3 26 0 27 0 0 0 chrX 31242306 31242333 -145731807 + AT_rich Low_complexity Low_complexity 1 27 0 287 220 193 18 chrX 31242771 31242880 -145731260 - MIR3 SINE MIR -19 189 62 262 268 0 0 chrX 31243102 31243158 -145730982 + MIR SINE MIR 201 256 -6 228 356 92 49 chrX 31243229 31243758 -145730382 - L2 LINE L2 -568 2746 2189 1648 69 0 0 chrX 31243758 31243975 -145730165 + L1PA7 LINE L1 5938 6154 0 228 356 92 49 chrX 31243975 31244018 -145730122 - L2 LINE L2 -1125 2189 2149 492 266 8 0 chrX 31244116 31244240 -145729900 - L2 LINE L2 -7 3306 3182 255 103 0 0 chrX 31244248 31244287 -145729853 + (CA)n Simple_repeat Simple_repeat 2 40 0 621 298 70 77 chrX 31244604 31245216 -145728924 - L2 LINE L2 -18 3295 2686 24 0 0 0 chrX 31247469 31247493 -145726647 + AT_rich Low_complexity Low_complexity 1 24 0 669 289 50 21 chrX 31247874 31248116 -145726024 - MIR SINE MIR -1 261 13 1221 251 7 46 chrX 31248266 31248701 -145725439 + LTR16B LTR ERVL 45 462 -2 706 199 0 0 chrX 31249956 31250087 -145724053 + FLAM_A SINE Alu 1 131 -2 348 329 112 54 chrX 31250257 31250649 -145723491 - L3 LINE CR1 -214 1363 949 373 245 80 53 chrX 31250670 31250785 -145723355 + MIR SINE MIR 31 155 -71 1826 258 26 2 chrX 31250785 31251238 -145722902 + LTR16B LTR ERVL 1 464 0 373 245 80 53 chrX 31251238 31251280 -145722860 + MIR SINE MIR 155 194 -32 360 305 76 52 chrX 31251304 31251515 -145722625 - L3 LINE CR1 -638 939 720 618 187 116 56 chrX 31251515 31251713 -145722427 - MER63A DNA MER1_type 0 210 1 360 305 76 52 chrX 31251713 31251750 -145722390 - L3 LINE CR1 -857 720 685 184 350 138 0 chrX 31253148 31253228 -145720912 + L2 LINE L2 3173 3263 -9 392 255 42 62 chrX 31254160 31254352 -145719788 - MER5A DNA MER1_type -1 188 1 4261 241 60 35 chrX 31254603 31256092 -145718048 + L2 LINE L2 1785 3313 0 191 290 47 37 chrX 31256498 31256605 -145717535 - L2 LINE L2 -93 3220 3113 643 236 128 10 chrX 31256610 31256813 -145717327 + MIR SINE MIR 35 261 -1 614 220 0 35 chrX 31257756 31257897 -145716243 - MER5A DNA MER1_type 0 189 54 1734 195 21 0 chrX 31258560 31258893 -145715247 + MER58B DNA MER1_type 1 340 -1 261 0 0 0 chrX 31260568 31260597 -145713543 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 650 256 6 6 chrX 31261825 31262001 -145712139 - MER69A DNA AcHobo -1 176 1 188 325 13 26 chrX 31262050 31262127 -145712013 - MIR3 SINE MIR -8 200 125 218 305 0 0 chrX 31264759 31264818 -145709322 + L2 LINE L2 3236 3294 -19 497 276 177 5 chrX 31265054 31265246 -145708894 + MIR SINE MIR 37 261 -1 27 0 0 0 chrX 31265295 31265322 -145708818 + AT_rich Low_complexity Low_complexity 1 27 0 22 88 0 0 chrX 31265558 31265615 -145708525 + AT_rich Low_complexity Low_complexity 1 57 0 315 250 155 0 chrX 31266016 31266100 -145708040 + L2 LINE L2 3217 3313 0 495 192 50 0 chrX 31266539 31266638 -145707502 - MIR SINE MIR -120 142 39 234 338 0 0 chrX 31266815 31266886 -145707254 + (TG)n Simple_repeat Simple_repeat 2 72 0 1894 184 0 0 chrX 31267611 31267921 -145706219 + AluJb SINE Alu 1 310 -2 2649 48 0 3 chrX 31268025 31268337 -145705803 + AluY SINE Alu 1 311 0 1936 122 64 10 chrX 31268400 31268696 -145705444 + AluSx SINE Alu 1 349 0 226 108 0 0 chrX 31268696 31268733 -145705407 + (A)n Simple_repeat Simple_repeat 1 180 0 975 246 0 0 chrX 31268793 31269013 -145705127 + L1ME2 LINE L1 5935 6154 -10 31016 96 12 59 chrX 31269896 31275678 -145698462 + L1PA7 LINE L1 1 5436 -718 1819 114 0 23 chrX 31275678 31275940 -145698200 + AluSg1 SINE Alu 40 295 -14 31016 96 12 59 chrX 31275940 31276615 -145697525 + L1PA7 LINE L1 5436 6141 -13 868 215 14 23 chrX 31277136 31277355 -145696785 + L1ME2 LINE L1 5939 6155 -9 207 0 0 0 chrX 31278823 31278846 -145695294 + (A)n Simple_repeat Simple_repeat 1 23 0 1967 143 0 55 chrX 31279281 31279609 -145694531 + AluJb SINE Alu 1 310 -2 2172 187 15 73 chrX 31279646 31280182 -145693958 - LTR40a LTR ERVL -14 505 1 246 237 34 0 chrX 31280402 31280461 -145693679 - L2 LINE L2 -2 3270 3210 24 32 0 0 chrX 31280563 31280594 -145693546 + AT_rich Low_complexity Low_complexity 1 31 0 487 306 22 38 chrX 31281058 31281241 -145692899 - MIR SINE MIR -49 213 34 1776 151 14 4 chrX 31282330 31282635 -145691505 - AluJo SINE Alu 0 310 3 931 138 32 37 chrX 31283337 31283409 -145690731 + MER53 DNA DNA 1 72 -117 1918 136 41 10 chrX 31283409 31283703 -145690437 - AluSx SINE Alu -9 303 1 931 138 32 37 chrX 31283703 31283819 -145690321 + MER53 DNA DNA 72 188 -1 2384 156 22 0 chrX 31286450 31286860 -145687280 + MSTB LTR MaLR 2 420 -6 318 250 94 0 chrX 31286860 31286956 -145687184 + MIR SINE MIR 93 197 -65 223 390 53 11 chrX 31286985 31287175 -145686965 + L2 LINE L2 2472 2669 -645 326 185 65 102 chrX 31287190 31287298 -145686842 + L2 LINE L2 3203 3306 -7 586 262 53 44 chrX 31288276 31288501 -145685639 - L2 LINE L2 -621 2693 2467 586 274 218 24 chrX 31288795 31289207 -145684933 - L3 LINE CR1 -149 1428 937 839 158 0 44 chrX 31291450 31291608 -145682532 + L1MB5 LINE L1 6024 6174 0 269 90 16 84 chrX 31291617 31291687 -145682453 + L1MB7 LINE L1 6109 6174 0 1651 128 0 24 chrX 31291717 31291967 -145682173 + AluJo SINE Alu 44 287 -25 2404 100 0 0 chrX 31292700 31293009 -145681131 + AluSx SINE Alu 1 309 -3 1352 201 45 48 chrX 31293204 31293517 -145680623 + AluJo SINE Alu 1 312 0 455 250 33 22 chrX 31293867 31294047 -145680093 + HsTC2 DNA Tc2 480 661 -1237 2446 63 3 0 chrX 31294047 31294350 -145679790 + AluY SINE Alu 1 304 -7 349 255 90 90 chrX 31294758 31295068 -145679072 + L1ME4a LINE L1 2725 3034 -3112 387 296 53 23 chrX 31295099 31295161 -145678979 + MER5B DNA MER1_type 1 60 -118 2051 129 10 7 chrX 31295161 31295464 -145678676 + AluSq SINE Alu 1 304 -9 387 296 53 23 chrX 31295464 31295533 -145678607 + MER5B DNA MER1_type 60 136 -42 289 194 126 29 chrX 31295535 31295638 -145678502 + MER39 LTR ERV1 1 113 -429 1226 191 109 30 chrX 31295673 31296056 -145678084 + MER39 LTR ERV1 92 584 -1 223 250 0 0 chrX 31296057 31296101 -145678039 - MER5B DNA MER1_type -134 44 1 2242 91 7 7 chrX 31296128 31296426 -145677714 + AluSx SINE Alu 1 298 -14 765 98 9 181 chrX 31296975 31297096 -145677044 + MER5B DNA MER1_type 1 71 -107 339 25 0 0 chrX 31297096 31297136 -145677004 + (CA)n Simple_repeat Simple_repeat 1 40 0 765 98 9 181 chrX 31297136 31297229 -145676911 + MER5B DNA MER1_type 71 178 0 350 298 103 62 chrX 31297434 31297676 -145676464 + L1ME4a LINE L1 3972 4223 -1923 2364 82 0 0 chrX 31297997 31298288 -145675852 - AluSx SINE Alu -21 291 1 25 31 0 0 chrX 31298828 31298860 -145675280 + AT_rich Low_complexity Low_complexity 1 32 0 384 287 52 68 chrX 31299020 31299386 -145674754 + L1ME4a LINE L1 5530 5889 -232 2053 92 0 41 chrX 31299390 31299684 -145674456 + AluSx SINE Alu 1 282 -30 264 137 0 0 chrX 31299684 31299735 -145674405 + (G)n Simple_repeat Simple_repeat 1 51 0 194 62 31 0 chrX 31299735 31299767 -145674373 + (CAAAAA)n Simple_repeat Simple_repeat 6 38 0 2412 65 0 0 chrX 31300256 31300550 -145673590 - AluY SINE Alu -17 294 1 180 0 0 0 chrX 31300744 31300764 -145673376 + (T)n Simple_repeat Simple_repeat 1 20 0 183 162 0 0 chrX 31302208 31302245 -145671895 + (CAG)n Simple_repeat Simple_repeat 2 38 0 22 17 0 68 chrX 31303778 31303800 -145670340 + AT_rich Low_complexity Low_complexity 1 23 -32 2079 118 3 40 chrX 31303800 31304123 -145670017 + AluJo SINE Alu 1 311 -1 22 17 0 68 chrX 31304123 31304141 -145669999 + AT_rich Low_complexity Low_complexity 23 38 -17 968 111 0 0 chrX 31304141 31304267 -145669873 + FLAM_C SINE Alu 1 126 -7 22 17 0 68 chrX 31304267 31304284 -145669856 + AT_rich Low_complexity Low_complexity 38 55 0 26 50 0 0 chrX 31304339 31304379 -145669761 + AT_rich Low_complexity Low_complexity 1 40 0 648 285 101 21 chrX 31306304 31306722 -145667418 - HAL1b LINE L1 -646 702 252 2469 77 0 3 chrX 31306738 31307049 -145667091 - AluSg SINE Alu 0 310 1 208 312 16 16 chrX 31309193 31309318 -145664822 + (TA)n Simple_repeat Simple_repeat 2 126 0 2301 96 28 0 chrX 31309318 31309673 -145664467 - Tigger4(Zombi) DNA MER2_type -1 2730 2366 2127 104 124 3 chrX 31309675 31310031 -145664109 + MSTA LTR MaLR 1 399 -29 1323 98 5 16 chrX 31310031 31310215 -145663925 - AluSg/x SINE Alu 0 312 131 1969 101 77 3 chrX 31310216 31310542 -145663598 - Tigger4(Zombi) DNA MER2_type -555 2176 1827 376 77 0 0 chrX 31310543 31310595 -145663545 - MADE1 DNA Mariner -1 79 28 4388 119 39 7 chrX 31310606 31311306 -145662834 - Tigger4(Zombi) DNA MER2_type -1962 769 48 414 0 0 0 chrX 31311318 31311364 -145662776 + (TG)n Simple_repeat Simple_repeat 2 47 0 247 397 84 0 chrX 31311695 31311826 -145662314 - L2 LINE L2 -23 3249 3108 266 324 0 14 chrX 31311913 31311984 -145662156 - L2 LINE L2 -21 3251 3182 * 758 289 59 8 chrX 31311976 31312215 -145661925 - MIR SINE MIR -3 259 9 434 310 189 28 chrX 31312338 31312826 -145661314 - L2 LINE L2 -224 3048 2485 21 0 0 0 chrX 31313741 31313762 -145660378 + AT_rich Low_complexity Low_complexity 1 21 0 662 276 61 0 chrX 31314139 31314335 -145659805 - MIR SINE MIR -48 214 7 2302 102 0 16 chrX 31314512 31314815 -145659325 + AluSg SINE Alu 1 298 -12 186 133 0 0 chrX 31314817 31314847 -145659293 + (ATG)n Simple_repeat Simple_repeat 2 31 0 249 57 0 0 chrX 31315031 31315066 -145659074 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 754 223 49 61 chrX 31315432 31315649 -145658491 + L1ME2 LINE L1 5906 6282 -52 2400 92 0 0 chrX 31315649 31315954 -145658186 + AluSg SINE Alu 1 305 -5 754 223 49 61 chrX 31315954 31316005 -145658135 + L1ME2 LINE L1 6282 6332 -2 362 248 8 33 chrX 31316066 31316187 -145657953 + L1MD2 LINE L1 6067 6184 -175 * 647 131 15 200 chrX 31316161 31316216 -145657924 + L1MD3 LINE L1 7784 7847 -148 4506 78 3 11 chrX 31316216 31316831 -145657309 + MER4B LTR ERV1 1 610 0 647 131 15 200 chrX 31316831 31317035 -145657105 + L1MD3 LINE L1 7847 7995 0 25 31 0 0 chrX 31317144 31317176 -145656964 + AT_rich Low_complexity Low_complexity 1 32 0 1024 127 17 29 chrX 31317391 31317540 -145656600 + MLT1B LTR MaLR 218 366 -24 3759 136 9 79 chrX 31317540 31317899 -145656241 + LTR8 LTR ERV1 1 283 -408 2227 112 0 7 chrX 31317899 31318203 -145655937 + AluSc SINE Alu 3 304 -5 3759 136 9 79 chrX 31318203 31318586 -145655554 + LTR8 LTR ERV1 283 691 0 1024 127 17 29 chrX 31318586 31318609 -145655531 + MLT1B LTR MaLR 366 388 -2 2851 200 61 10 chrX 31318611 31319297 -145654843 - L1ME1 LINE L1 -9 6157 5437 22 56 0 0 chrX 31319966 31320002 -145654138 + AT_rich Low_complexity Low_complexity 1 36 0 3212 164 25 5 chrX 31320140 31320701 -145653439 + MER90 LTR ERV1 1 572 -42 31 0 0 0 chrX 31320739 31320770 -145653370 + AT_rich Low_complexity Low_complexity 1 31 0 647 254 38 22 chrX 31321344 31321529 -145652611 - MIR3 SINE MIR -6 202 15 473 102 45 57 chrX 31321644 31321732 -145652408 - MER90 LTR ERV1 -361 253 167 1385 117 20 159 chrX 31322025 31322048 -145652092 + MER96B DNA MER1_type? 110 135 -282 2467 87 0 0 chrX 31322048 31322357 -145651783 + AluSx SINE Alu 1 309 -3 1385 117 20 159 chrX 31322357 31322691 -145651449 + MER96B DNA MER1_type? 135 417 0 253 207 17 17 chrX 31322691 31322749 -145651391 - MER20B DNA MER1_type -695 88 31 307 311 66 19 chrX 31322774 31322880 -145651260 - MLT1J LTR MaLR -77 434 324 2937 143 33 19 chrX 31322915 31323396 -145650744 + LTR45B LTR ERV1 2 489 0 323 272 65 30 chrX 31323513 31323682 -145650458 - MLT1J LTR MaLR -336 175 1 1637 204 32 60 chrX 31323819 31324289 -145649851 - LTR16A1 LTR ERVL 0 457 1 2202 107 0 0 chrX 31324736 31325017 -145649123 + AluSx SINE Alu 17 297 -15 183 80 0 0 chrX 31325483 31325508 -145648632 + (A)n Simple_repeat Simple_repeat 1 25 0 180 111 0 0 chrX 31328726 31328753 -145645387 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 1619 118 57 0 chrX 31329189 31329451 -145644689 + L1MA8 LINE L1 6013 6289 -2 240 111 0 0 chrX 31330164 31330200 -145643940 + (A)n Simple_repeat Simple_repeat 1 36 0 504 289 100 30 chrX 31330392 31330739 -145643401 + L1ME2 LINE L1 5477 5858 -306 2410 89 0 3 chrX 31330740 31331044 -145643096 + AluSq SINE Alu 1 303 -10 192 40 0 0 chrX 31331663 31331688 -145642452 + (TC)n Simple_repeat Simple_repeat 1 25 0 207 171 0 0 chrX 31331688 31331723 -145642417 + (CA)n Simple_repeat Simple_repeat 2 36 0 221 358 41 32 chrX 31331873 31331996 -145642144 - L2 LINE L2 -11 3302 3179 2966 139 12 7 chrX 31332013 31332437 -145641703 + MSTB LTR MaLR 1 426 0 576 285 52 23 chrX 31332457 31332682 -145641458 - MIR SINE MIR -4 258 30 196 298 64 32 chrX 31333021 31333115 -145641025 - L2 LINE L2 -16 3256 3160 231 320 62 10 chrX 31333380 31333477 -145640663 - L2 LINE L2 -2 3270 3169 956 192 68 57 chrX 31333480 31333643 -145640497 + L1MB5 LINE L1 5050 5219 -927 671 202 8 23 chrX 31333643 31333772 -145640368 + FLAM_C SINE Alu 5 131 -2 956 192 68 57 chrX 31333772 31333889 -145640251 + L1MB5 LINE L1 5219 5333 -813 621 90 0 0 chrX 31333889 31333967 -145640173 - LTR3b LTR ERVK 0 500 423 299 56 0 0 chrX 31333968 31334004 -145640136 - LTR3b LTR ERVK -42 458 423 3701 83 11 0 chrX 31334010 31334479 -145639661 - LTR3b LTR ERVK -10 490 17 4577 150 19 49 chrX 31334479 31334572 -145639568 + L1MB5 LINE L1 5348 5442 -732 1787 159 14 27 chrX 31334572 31334867 -145639273 + AluJb SINE Alu 1 291 -21 4577 150 19 49 chrX 31334867 31335626 -145638514 + L1MB5 LINE L1 5442 6174 0 2181 127 3 0 chrX 31336071 31336370 -145637770 - AluSq SINE Alu -12 301 2 1018 214 122 13 chrX 31336586 31336890 -145637250 - MER113 DNA MER1_type? -132 389 53 21 0 0 0 chrX 31336978 31336999 -145637141 + AT_rich Low_complexity Low_complexity 1 21 0 2353 115 0 0 chrX 31336999 31337311 -145636829 - AluSx SINE Alu 0 312 1 2827 246 37 39 chrX 31338090 31338870 -145635270 - L2 LINE L2 -687 2627 1849 265 224 0 0 chrX 31339388 31339437 -145634703 + L2 LINE L2 3261 3309 -4 362 326 65 11 chrX 31339577 31339761 -145634379 + MIR SINE MIR 10 203 -59 1800 82 0 0 chrX 31339871 31340090 -145634050 + AluSg/x SINE Alu 73 291 -21 3593 173 36 40 chrX 31340884 31341578 -145632562 + LTR8 LTR ERV1 1 691 0 197 174 0 43 chrX 31342933 31342965 -145631175 - MIR SINE MIR -40 222 191 2224 121 0 3 chrX 31342965 31343262 -145630878 - AluJb SINE Alu -16 296 1 197 174 0 43 chrX 31343262 31343275 -145630865 - MIR SINE MIR -71 191 179 1723 137 42 0 chrX 31343289 31343574 -145630566 + L1MA5 LINE L1 5977 6273 -27 383 242 8 23 chrX 31343575 31343707 -145630433 + L1MC4a LINE L1 5295 5424 -2384 438 204 20 120 chrX 31343709 31343786 -145630354 - MIR SINE MIR -66 196 144 2439 97 3 0 chrX 31343786 31344096 -145630044 - AluJb SINE Alu -1 311 1 438 204 20 120 chrX 31344096 31344196 -145629944 - MIR SINE MIR -118 144 36 21 36 0 0 chrX 31344643 31344671 -145629469 + AT_rich Low_complexity Low_complexity 1 28 0 286 260 141 38 chrX 31345355 31345501 -145628639 + MLT1L LTR MaLR 234 364 -251 4515 87 25 40 chrX 31345501 31346145 -145627995 + MER51A LTR ERV1 1 634 0 286 260 141 38 chrX 31346145 31346250 -145627890 + MLT1L LTR MaLR 364 615 0 2263 221 12 45 chrX 31346353 31346676 -145627464 + L1MD2 LINE L1 4682 5014 -1132 1648 175 7 17 chrX 31346676 31346973 -145627167 - AluJo SINE Alu -17 295 2 2263 221 12 45 chrX 31346973 31347035 -145627105 + L1MD2 LINE L1 5014 5076 -1070 1727 168 3 27 chrX 31347035 31347332 -145626808 + AluJb SINE Alu 1 290 -22 2263 221 12 45 chrX 31347332 31347587 -145626553 + L1MD2 LINE L1 5076 5302 -844 1008 158 0 0 chrX 31347592 31347759 -145626381 + AluSg/x SINE Alu 137 303 0 5379 166 33 24 chrX 31347762 31348703 -145625437 + L1MD2 LINE L1 5293 6247 -112 1856 171 0 22 chrX 31348703 31349019 -145625121 + AluJo SINE Alu 1 309 -3 5379 166 33 24 chrX 31349019 31349134 -145625006 + L1MD2 LINE L1 6247 6359 0 1136 270 79 29 chrX 31350799 31351219 -145622921 + MLT1L LTR MaLR 70 613 -2 2344 85 7 10 chrX 31351536 31351841 -145622299 - AluSp SINE Alu -9 304 1 714 182 7 7 chrX 31351841 31351984 -145622156 - L1M4 LINE L1 -838 5308 5166 925 235 58 72 chrX 31351987 31352473 -145621667 + L1MC4a LINE L1 5691 6169 -1639 28 29 0 0 chrX 31352650 31352685 -145621455 + AT_rich Low_complexity Low_complexity 1 35 0 1441 142 62 113 chrX 31352874 31353172 -145620968 + L1MB5 LINE L1 5186 5454 -909 2315 88 10 3 chrX 31353172 31353479 -145620661 + AluSx SINE Alu 1 309 -3 1441 142 62 113 chrX 31353479 31353638 -145620502 + L1MB5 LINE L1 5454 5620 -743 3875 187 74 45 chrX 31353641 31354685 -145619455 + Charlie6 DNA MER1_type 2309 3382 -118 392 191 0 0 chrX 31354683 31354746 -145619394 + Charlie6 DNA MER1_type 2443 2505 -995 * 961 181 156 0 chrX 31354783 31354988 -145619152 - L1MC/D LINE L1 -2369 5626 5390 650 211 30 0 chrX 31354988 31355121 -145619019 + Charlie6 DNA MER1_type 3357 3493 -7 795 113 0 93 chrX 31355121 31355271 -145618869 + L1MB5 LINE L1 6038 6173 -1 1064 179 0 67 chrX 31355366 31355590 -145618550 + AluJb SINE Alu 85 293 -19 253 241 42 94 chrX 31355609 31355800 -145618340 + MER112 DNA MER1_type 2 182 -78 228 320 32 80 chrX 31355961 31355976 -145618164 + L3 LINE CR1 1402 1416 -161 2361 85 0 0 chrX 31355976 31356270 -145617870 + AluSx SINE Alu 1 294 -18 228 320 32 80 chrX 31356270 31356379 -145617761 + L3 LINE CR1 1416 1520 -57 183 156 0 0 chrX 31357083 31357115 -145617025 + (CA)n Simple_repeat Simple_repeat 2 33 0 300 223 64 53 chrX 31357162 31357256 -145616884 + L1ME3A LINE L1 4818 4912 -1234 234 263 13 0 chrX 31357310 31357386 -145616754 + L1ME3A LINE L1 5258 5334 -812 2355 70 0 24 chrX 31357437 31357735 -145616405 + AluSx SINE Alu 1 291 -21 1133 233 51 19 chrX 31357755 31358345 -145615795 + L1ME3A LINE L1 5362 6011 -159 425 169 65 5 chrX 31358355 31358478 -145615662 - MER53 DNA DNA 0 189 1 2198 125 0 3 chrX 31358513 31358817 -145615323 - AluJb SINE Alu -9 303 1 2459 57 7 0 chrX 31359663 31359960 -145614180 + AluSx SINE Alu 1 299 -13 454 273 168 23 chrX 31360150 31360370 -145613770 + MIR SINE MIR 11 262 0 913 104 15 22 chrX 31361267 31361280 -145612860 - AluJo SINE Alu -178 134 122 189 0 0 0 chrX 31361280 31361301 -145612839 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 913 104 15 22 chrX 31361301 31361422 -145612718 - AluJo SINE Alu -190 122 1 248 304 50 39 chrX 31361856 31362037 -145612103 + L2 LINE L2 2833 3015 -257 1820 109 87 0 chrX 31362332 31362607 -145611533 + AluSg SINE Alu 1 299 -11 555 286 121 42 chrX 31362610 31363167 -145610973 - L1ME2 LINE L1 -298 5866 5257 2273 128 0 0 chrX 31363296 31363608 -145610532 - AluSx SINE Alu 0 312 1 2874 181 25 88 chrX 31363709 31363989 -145610151 - L1MC4 LINE L1 0 8042 7746 1514 153 12 24 chrX 31363989 31364244 -145609896 - AluJo SINE Alu -17 295 44 2874 181 25 88 chrX 31364244 31364306 -145609834 - L1MC4 LINE L1 -296 7746 7682 1750 142 52 7 chrX 31364306 31364594 -145609546 - AluJb SINE Alu -11 301 1 2874 181 25 88 chrX 31364594 31364783 -145609357 - L1MC4 LINE L1 -360 7682 7568 2372 100 3 0 chrX 31364783 31365094 -145609046 + AluSx SINE Alu 1 312 0 2874 181 25 88 chrX 31365094 31365313 -145608827 - L1MC4 LINE L1 -474 7568 7337 520 276 14 0 chrX 31365339 31365497 -145608643 - L1MC4 LINE L1 -1188 6620 6461 416 153 0 0 chrX 31365497 31365556 -145608584 + Tigger2 DNA MER2_type 2 60 -2658 345 122 0 0 chrX 31365571 31365620 -145608520 + MER83B LTR ERV1 226 274 -104 935 201 6 0 chrX 31365625 31365784 -145608356 - MER8 DNA MER2_type -79 160 1 867 242 47 23 chrX 31365784 31366040 -145608100 - L1MC4a LINE L1 -1345 6463 6202 2415 84 0 0 chrX 31366049 31366347 -145607793 - AluSc SINE Alu -11 298 1 904 294 63 60 chrX 31366396 31366589 -145607551 - L1MEd LINE L1 -2892 3237 3046 3076 122 15 34 chrX 31366589 31367038 -145607102 + LTR24 LTR ERV1 1 457 -10 186 43 0 0 chrX 31367038 31367061 -145607079 + (TC)n Simple_repeat Simple_repeat 2 24 0 2412 106 0 0 chrX 31367061 31367372 -145606768 - AluSx SINE Alu -1 311 1 3076 122 15 34 chrX 31367372 31367397 -145606743 + LTR24 LTR ERV1 455 467 0 904 294 63 60 chrX 31367397 31367711 -145606429 - L1MEd LINE L1 -3083 3046 2735 2334 105 0 9 chrX 31367711 31368026 -145606114 - AluSx SINE Alu 0 312 1 904 294 63 60 chrX 31368026 31368620 -145605520 - L1MEd LINE L1 -3394 2735 2131 350 244 36 76 chrX 31368902 31369152 -145604988 - L1MEd LINE L1 -5171 948 709 340 235 12 35 chrX 31369588 31369673 -145604467 - L2 LINE L2 -6 3307 3225 4389 189 23 34 chrX 31370331 31371311 -145602829 + L1MB7 LINE L1 3560 4528 -1618 1987 140 0 3 chrX 31371311 31371597 -145602543 - AluSx SINE Alu -27 285 1 4389 189 23 34 chrX 31371597 31371732 -145602408 + L1MB7 LINE L1 4528 4663 -1483 723 193 129 0 chrX 31371764 31371935 -145602205 + AluSp SINE Alu 117 309 -4 4147 169 31 48 chrX 31371935 31372795 -145601345 + L1MB7 LINE L1 4678 5512 -672 2028 107 7 4 chrX 31372795 31373101 -145601039 + AluSx SINE Alu 11 312 0 4147 169 31 48 chrX 31373101 31373753 -145600387 + L1MB7 LINE L1 5512 6173 -11 2248 85 0 0 chrX 31373771 31374078 -145600062 - AluSc SINE Alu 0 307 1 722 215 6 19 chrX 31374089 31374247 -145599893 - MER3 DNA MER1_type -53 156 1 722 194 44 103 chrX 31374271 31374501 -145599639 + L1MC5 LINE L1 7510 7717 -244 2306 105 0 0 chrX 31374501 31374819 -145599321 + AluSx SINE Alu 1 318 0 722 194 44 103 chrX 31374819 31374927 -145599213 + L1MC5 LINE L1 7717 7830 -131 5569 125 27 49 chrX 31374929 31375365 -145598775 + L1MA8 LINE L1 5163 5607 -684 2252 91 0 0 chrX 31375365 31375677 -145598463 + AluSq SINE Alu 1 312 0 5569 125 27 49 chrX 31375677 31375844 -145598296 + L1MA8 LINE L1 5607 5776 -515 195 42 0 0 chrX 31375844 31375868 -145598272 + (TA)n Simple_repeat Simple_repeat 1 24 0 5569 125 27 49 chrX 31375868 31376413 -145597727 + L1MA8 LINE L1 5776 6291 0 1760 178 7 13 chrX 31376432 31376736 -145597404 + AluJo SINE Alu 1 302 -10 262 280 0 21 chrX 31376737 31376830 -145597310 + L1MC5 LINE L1 7822 7912 -49 447 19 0 0 chrX 31376838 31376890 -145597250 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 21 0 0 0 chrX 31377191 31377212 -145596928 + AT_rich Low_complexity Low_complexity 1 21 0 541 265 41 8 chrX 31377525 31377770 -145596370 + L1ME3A LINE L1 4316 4568 -1578 309 221 10 39 chrX 31377796 31377900 -145596240 + L1ME3A LINE L1 5862 5962 -208 2205 104 27 0 chrX 31378131 31378430 -145595710 - AluSx SINE Alu -5 307 1 601 71 0 0 chrX 31378442 31378527 -145595613 - L1PA6 LINE L1 -1 6153 6069 371 343 36 7 chrX 31379242 31379379 -145594761 - MIR SINE MIR -113 149 9 193 156 0 143 chrX 31379432 31379509 -145594631 - L2 LINE L2 -1039 2275 2210 1674 205 40 30 chrX 31379590 31379995 -145594145 + LTR2 LTR ERV1 41 449 0 275 114 0 0 chrX 31380010 31380043 -145594097 - L1PA5 LINE L1 -278 5876 5841 2381 35 3 0 chrX 31380043 31380331 -145593809 + L1PA5 LINE L1 5864 6152 -2 658 246 161 5 chrX 31380454 31380653 -145593487 + MIR SINE MIR 20 249 -13 350 141 141 0 chrX 31381056 31381127 -145593013 - L1PB4 LINE L1 -11 6145 6065 600 281 50 63 chrX 31381224 31381700 -145592440 + L1MEd LINE L1 788 1257 -4862 2266 229 19 28 chrX 31381824 31382457 -145591683 + L1ME1 LINE L1 5516 6142 -24 323 72 0 175 chrX 31382461 31382516 -145591624 - L1MB8 LINE L1 -1 6177 6145 2129 75 0 4 chrX 31382516 31382781 -145591359 - AluSq SINE Alu -20 293 30 323 72 0 175 chrX 31382781 31382822 -145591318 - L1MB8 LINE L1 -33 6145 6098 1683 91 40 33 chrX 31382823 31383099 -145591041 - L1MA8 LINE L1 0 6291 6014 236 250 13 0 chrX 31383407 31383483 -145590657 + L1 LINE L1 3686 3762 -2384 2188 128 0 0 chrX 31383485 31383782 -145590358 + AluSx SINE Alu 1 297 -15 519 308 50 33 chrX 31383993 31384292 -145589848 + L1MEd LINE L1 5 308 -5811 4511 92 18 191 chrX 31384361 31385096 -145589044 + Tigger3b DNA MER2_type 1 861 -2168 2337 104 3 0 chrX 31385096 31385403 -145588737 + AluSq SINE Alu 1 308 -5 4511 92 18 191 chrX 31385403 31385505 -145588635 + Tigger3b DNA MER2_type 861 979 -2050 1188 150 62 5 chrX 31385505 31385698 -145588442 - AluJb SINE Alu -108 204 1 4511 92 18 191 chrX 31385698 31386148 -145587992 + Tigger3b DNA MER2_type 979 1232 0 270 328 133 52 chrX 31386251 31386325 -145587815 + L2 LINE L2 1866 1933 -1381 2126 127 0 0 chrX 31386325 31386617 -145587523 - AluSx SINE Alu -20 292 1 270 328 133 52 chrX 31386617 31386926 -145587214 + L2 LINE L2 1933 2280 -1034 1540 246 91 26 chrX 31386930 31387434 -145586706 + MER34 LTR ERV1 6 542 0 505 349 105 31 chrX 31387443 31387984 -145586156 + L2 LINE L2 2285 2865 -449 230 160 85 5 chrX 31388006 31388111 -145586029 + AluJo SINE Alu 115 287 -15 334 333 212 19 chrX 31388141 31388462 -145585678 + L2 LINE L2 2890 3272 0 375 228 19 25 chrX 31388662 31388820 -145585320 - HAL1b LINE L1 -194 1154 998 254 303 115 66 chrX 31389461 31389705 -145584435 + L2 LINE L2 3016 3271 -1 279 157 0 0 chrX 31389709 31389760 -145584380 + GA-rich Low_complexity Low_complexity 2 52 0 187 338 23 45 chrX 31389761 31389777 -145584363 - L2 LINE L2 -214 3058 3043 198 103 0 0 chrX 31389777 31389806 -145584334 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 187 338 23 45 chrX 31389806 31389922 -145584218 - L2 LINE L2 -229 3043 2929 1756 102 0 147 chrX 31389946 31390300 -145583840 + AluSx SINE Alu 1 302 0 740 232 79 6 chrX 31390943 31391120 -145583020 + MIR SINE MIR 13 202 -60 311 285 126 29 chrX 31391147 31391424 -145582716 - L2 LINE L2 -1132 2182 1879 421 229 0 10 chrX 31391845 31391941 -145582199 + MER34 LTR ERV1 1 95 -447 734 217 29 6 chrX 31391944 31392119 -145582021 + MER34 LTR ERV1 362 540 -2 216 0 0 0 chrX 31392220 31392244 -145581896 + (GA)n Simple_repeat Simple_repeat 1 24 0 3812 183 6 25 chrX 31392357 31392568 -145581572 - L1P LINE L1 -910 5236 5023 2112 137 16 0 chrX 31392568 31392874 -145581266 - AluJb SINE Alu -1 311 1 3812 183 6 25 chrX 31392874 31393514 -145580626 - L1P LINE L1 -1123 5023 4401 * 5651 108 17 7 chrX 31393512 31394400 -145579740 + L1PA16 LINE L1 5260 6156 -10 2604 139 29 5 chrX 31394460 31394876 -145579264 + MSTB LTR MaLR 1 426 0 3004 165 37 15 chrX 31395279 31395825 -145578315 - MER68 LTR ERV1 -3 559 2 225 0 0 0 chrX 31395954 31395979 -145578161 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 267 31 0 0 chrX 31395978 31396010 -145578130 + (GA)n Simple_repeat Simple_repeat 1 32 0 2080 105 0 21 chrX 31396024 31396310 -145577830 + AluSx SINE Alu 24 303 -9 311 304 101 13 chrX 31397002 31397138 -145577002 - L2 LINE L2 0 3313 3160 2250 108 0 6 chrX 31397138 31397452 -145576688 + AluSx SINE Alu 1 312 0 311 304 101 13 chrX 31397452 31397473 -145576667 - L2 LINE L2 -153 3160 3142 327 399 91 10 chrX 31397650 31397958 -145576182 - L2 LINE L2 -400 2914 2582 1662 192 11 21 chrX 31398024 31398311 -145575829 + AluJb SINE Alu 1 284 -28 1994 156 10 0 chrX 31398496 31398803 -145575337 - AluJo SINE Alu -2 310 1 343 283 9 0 chrX 31399017 31399123 -145575017 - L1MC4a LINE L1 -1874 5934 5828 312 91 0 0 chrX 31399130 31399174 -145574966 + U6 snRNA snRNA 2 45 -62 2361 106 0 3 chrX 31399190 31399501 -145574639 - AluSx SINE Alu -2 310 1 237 271 35 0 chrX 31399503 31399588 -145574552 - L1MC4a LINE L1 -1983 5825 5738 195 100 0 0 chrX 31399588 31399618 -145574522 + (TTA)n Simple_repeat Simple_repeat 1 30 0 237 337 53 98 chrX 31400546 31400831 -145573309 + L3b LINE CR1 1172 1443 -140 441 0 0 0 chrX 31401369 31401418 -145572722 + (TG)n Simple_repeat Simple_repeat 1 49 0 2216 86 4 0 chrX 31401418 31401697 -145572443 - AluSp SINE Alu -33 280 1 231 333 69 13 chrX 31401975 31402134 -145572006 - L3 LINE CR1 -565 1012 845 2997 129 29 76 chrX 31402208 31402663 -145571477 + MER41A LTR ERV1 1 425 -129 2260 113 0 0 chrX 31402663 31402973 -145571167 - AluY SINE Alu -1 310 1 2997 129 29 76 chrX 31402973 31403097 -145571043 + MER41A LTR ERV1 425 553 -1 2384 104 0 0 chrX 31403284 31403583 -145570557 + AluSg SINE Alu 1 299 -11 611 147 0 0 chrX 31403634 31403736 -145570404 - MER2 DNA MER2_type -135 210 109 277 252 93 22 chrX 31403742 31403881 -145570259 - MLT1L LTR MaLR -1 614 466 745 219 39 11 chrX 31404146 31404324 -145569816 + MIR SINE MIR 69 251 -11 318 268 97 8 chrX 31404327 31404532 -145569608 + L1MC4 LINE L1 5707 5816 -305 2529 149 14 65 chrX 31405739 31406118 -145568022 + L1MA9 LINE L1 5230 5627 -685 2460 62 0 3 chrX 31406118 31406422 -145567718 + AluY SINE Alu 1 303 -8 2324 97 0 3 chrX 31406432 31406743 -145567397 + AluSp SINE Alu 2 311 -2 2529 149 14 65 chrX 31406743 31406935 -145567205 + L1MA9 LINE L1 5636 5782 -530 336 238 71 0 chrX 31406945 31407029 -145567111 + L1MC4 LINE L1 6614 6703 -1339 * 340 296 0 0 chrX 31406954 31407042 -145567098 - L1MC4 LINE L1 -1340 6702 6615 213 94 0 0 chrX 31407042 31407074 -145567066 + (CA)n Simple_repeat Simple_repeat 1 32 0 1436 130 16 49 chrX 31407100 31407347 -145566793 + AluJb SINE Alu 55 293 -19 1104 187 32 166 chrX 31407347 31407883 -145566257 + L1MA9 LINE L1 5824 6287 -25 1479 170 87 8 chrX 31407883 31408148 -145565992 - AluJb SINE Alu -26 286 1 22 35 0 0 chrX 31408148 31408177 -145565963 + AT_rich Low_complexity Low_complexity 1 29 0 551 284 83 27 chrX 31408253 31408463 -145565677 + MIR SINE MIR 1 218 -44 1549 123 0 5 chrX 31408575 31408787 -145565353 + AluSg/x SINE Alu 85 295 -17 288 0 0 0 chrX 31409984 31410016 -145564124 + (CA)n Simple_repeat Simple_repeat 1 32 0 180 77 0 0 chrX 31410457 31410483 -145563657 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1707 209 56 13 chrX 31410704 31411154 -145562986 + L1ME2 LINE L1 5694 6162 -2 1931 150 0 0 chrX 31411175 31411462 -145562678 + AluJo SINE Alu 1 287 -25 2279 103 3 0 chrX 31411710 31412036 -145562104 - AluSx SINE Alu 0 312 1 2290 119 0 0 chrX 31412844 31413156 -145560984 - AluSx SINE Alu 0 312 1 15820 106 15 35 chrX 31413299 31415763 -145558377 + Tigger1 DNA MER2_type 4 2418 0 1680 143 115 3 chrX 31415877 31416199 -145557941 - MER46B DNA MER2_type 0 236 4 266 235 0 0 chrX 31416498 31416549 -145557591 - L2 LINE L2 0 3313 3263 22 0 0 0 chrX 31417993 31418015 -145556125 + AT_rich Low_complexity Low_complexity 1 22 0 1913 218 59 50 chrX 31418069 31418225 -145555915 - MER97a DNA MER1_type? 0 894 741 2211 162 6 3 chrX 31418225 31418589 -145555551 + MLT1A1 LTR MaLR 1 365 0 1913 218 59 50 chrX 31418589 31418669 -145555471 - MER97a DNA MER1_type? -153 741 663 726 91 0 0 chrX 31418669 31418768 -145555372 + HY3 scRNA scRNA 1 99 -2 1913 218 59 50 chrX 31418768 31419222 -145554918 - MER97a DNA MER1_type? -231 663 197 1292 177 41 4 chrX 31419222 31419488 -145554652 + MER33 DNA MER1_type 1 276 -48 16552 166 15 43 chrX 31419501 31419981 -145554159 - L1MA4 LINE L1 -5 7714 7222 1860 161 7 0 chrX 31419981 31420279 -145553861 + AluJb SINE Alu 1 300 -12 16552 166 15 43 chrX 31420279 31420512 -145553628 - L1MA4 LINE L1 -497 7222 6984 2134 129 3 0 chrX 31420512 31420822 -145553318 - AluSx SINE Alu -1 311 1 16552 166 15 43 chrX 31420822 31421838 -145552302 - L1MA4 LINE L1 -735 6984 5940 2207 89 11 0 chrX 31421838 31422147 -145551993 + AluSx SINE Alu 1 312 0 16552 166 15 43 chrX 31422147 31424817 -145549323 - L1MA4 LINE L1 -1779 5940 3195 2213 129 3 0 chrX 31424817 31425126 -145549014 - AluSg SINE Alu 0 310 1 16552 166 15 43 chrX 31425126 31425282 -145548858 - L1MA4 LINE L1 -4524 3195 3283 1708 152 3 33 chrX 31425282 31425585 -145548555 + AluJo SINE Alu 14 307 -5 16552 166 15 43 chrX 31425585 31425623 -145548517 - L1MA4 LINE L1 -4435 3284 3246 325 132 19 132 chrX 31425627 31425733 -145548407 + MER33 DNA MER1_type 231 324 0 1057 173 52 5 chrX 31425736 31425927 -145548213 - MER97a DNA MER1_type? -693 201 2 198 0 0 0 chrX 31426430 31426452 -145547688 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 521 291 48 15 chrX 31426471 31426677 -145547463 - MLT1J LTR MaLR -8 503 291 1924 201 19 5 chrX 31426684 31427111 -145547029 + L1M4 LINE L1 4387 4819 -1327 * 2845 196 39 11 chrX 31427087 31427730 -145546410 + L1MDa LINE L1 1737 2397 -4143 796 125 100 0 chrX 31427747 31427867 -145546273 + MER20 DNA MER1_type 88 219 0 875 155 14 20 chrX 31428099 31428247 -145545893 + AluJo SINE Alu 4 150 -162 22101 161 50 16 chrX 31428247 31429533 -145544607 - L1 LINE L1 -1193 6372 5131 1922 140 49 7 chrX 31429533 31429819 -145544321 - AluJb SINE Alu -14 298 1 22101 161 50 16 chrX 31429819 31431764 -145542376 - L1 LINE L1 -2434 5131 3253 2181 131 0 3 chrX 31431764 31432077 -145542063 - AluSq SINE Alu -1 312 1 22101 161 50 16 chrX 31432077 31434828 -145539312 - L1 LINE L1 -4312 3253 32 812 167 35 14 chrX 31434835 31434979 -145539161 - AluJo SINE Alu -165 147 1 1485 231 44 41 chrX 31434980 31435439 -145538701 + L1M4 LINE L1 3483 3942 -2204 1238 213 37 4 chrX 31435450 31435694 -145538446 + L1M4 LINE L1 5 256 -6286 2833 144 16 94 chrX 31435816 31436425 -145537715 + L1MB5 LINE L1 5577 6138 -36 1228 249 32 41 chrX 31436476 31436515 -145537625 + L1M4 LINE L1 4428 4466 -2178 2214 99 3 0 chrX 31436515 31436828 -145537312 + AluSx SINE Alu 1 314 0 1228 249 32 41 chrX 31436828 31437129 -145537011 + L1M4 LINE L1 4466 4766 -1878 348 270 59 13 chrX 31437107 31437259 -145536881 + L1PA14 LINE L1 6165 6323 -336 * 1975 177 35 11 chrX 31437149 31437517 -145536623 + L1MD2 LINE L1 6214 6590 -267 224 303 189 51 chrX 31437617 31437792 -145536348 + L2 LINE L2 3114 3312 -1 21 0 0 0 chrX 31437903 31437924 -145536216 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chrX 31438411 31438451 -145535689 + AT_rich Low_complexity Low_complexity 1 40 0 644 236 80 34 chrX 31438551 31438788 -145535352 - L1MC4 LINE L1 0 8042 7795 2254 94 0 3 chrX 31438848 31439145 -145534995 - AluSg SINE Alu -14 296 1 988 139 0 45 chrX 31439151 31439379 -145534761 - AluJb SINE Alu 0 312 1 1859 138 34 10 chrX 31439425 31439722 -145534418 - AluJo SINE Alu -8 304 1 1529 156 86 0 chrX 31439806 31440062 -145534078 + AluJb SINE Alu 2 279 -33 461 245 64 64 chrX 31440082 31440270 -145533870 - L1MC4 LINE L1 -384 7658 7471 1583 168 118 1 chrX 31440675 31441005 -145533135 - L1MB4 LINE L1 -1 6179 5813 2384 100 0 3 chrX 31441720 31442030 -145532110 - AluSx SINE Alu -3 309 1 2439 63 0 32 chrX 31442888 31443203 -145530937 - AluY SINE Alu -6 305 1 185 339 0 0 chrX 31443834 31443890 -145530250 + MIR SINE MIR 198 253 -9 2068 107 11 0 chrX 31444119 31444430 -145529710 + AluSx SINE Alu 1 314 0 1138 47 0 0 chrX 31444633 31444762 -145529378 - AluY SINE Alu -182 129 1 27 0 0 0 chrX 31445016 31445043 -145529097 + AT_rich Low_complexity Low_complexity 1 27 0 691 116 0 147 chrX 31445046 31445175 -145528965 + FLAM_C SINE Alu 2 111 -32 52 30 0 0 chrX 31445194 31445260 -145528880 + AT_rich Low_complexity Low_complexity 1 66 0 251 287 58 0 chrX 31445359 31445493 -145528647 - HAL1b LINE L1 -136 2371 840 1185 167 0 0 chrX 31445555 31445723 -145528417 - FAM SINE Alu -7 168 1 357 277 62 0 chrX 31445850 31445980 -145528160 + L1ME4a LINE L1 5984 6121 0 2294 93 3 10 chrX 31446124 31446424 -145527716 + AluSx SINE Alu 1 298 -14 2131 107 0 32 chrX 31446682 31446992 -145527148 - AluSx SINE Alu -11 301 2 299 258 0 0 chrX 31447019 31447085 -145527055 - LTR16A1 LTR ERVL -139 318 253 1787 204 68 19 chrX 31447085 31447511 -145526629 + MLT1D LTR MaLR 1 447 -58 25 0 0 0 chrX 31447519 31447544 -145526596 + AT_rich Low_complexity Low_complexity 1 25 0 884 208 115 67 chrX 31447544 31447813 -145526327 - AluJo SINE Alu -30 282 1 337 129 0 86 chrX 31447817 31447887 -145526253 + MLT1D LTR MaLR 440 503 -2 384 249 95 83 chrX 31447890 31447929 -145526211 - LTR16A1 LTR ERVL -201 256 219 2072 83 49 3 chrX 31447929 31448217 -145525923 - AluSg SINE Alu -8 302 2 384 249 95 83 chrX 31448217 31448430 -145525710 - LTR16A1 LTR ERVL -238 219 1 340 326 0 0 chrX 31448691 31448789 -145525351 + L1MDa LINE L1 2444 2541 -3999 2161 95 0 38 chrX 31448945 31449122 -145525018 - AluSx SINE Alu -7 305 144 2257 102 7 7 chrX 31449122 31449426 -145524714 - AluSx SINE Alu -8 304 1 2161 95 0 38 chrX 31449426 31449565 -145524575 - AluSx SINE Alu -168 144 1 1408 123 0 0 chrX 31449638 31449833 -145524307 - AluSg/x SINE Alu -8 302 108 354 107 4 0 chrX 31449835 31449891 -145524249 - Alu SINE Alu -256 44 1 517 264 68 26 chrX 31449891 31450207 -145523933 - HAL1 LINE L1 -756 1751 1391 2308 86 30 0 chrX 31450333 31450637 -145523503 + AluSp SINE Alu 1 313 0 2149 102 24 0 chrX 31451169 31451463 -145522677 - AluSx SINE Alu -11 301 1 2316 93 0 10 chrX 31451539 31451840 -145522300 - AluSc SINE Alu -11 298 1 248 222 39 33 chrX 31451840 31452595 -145521545 - L1MC4 LINE L1 -6 8036 7261 1637 174 0 83 chrX 31452665 31453004 -145521136 - AluJo SINE Alu -1 311 1 916 133 0 0 chrX 31453108 31453228 -145520912 - FLAM_C SINE Alu -12 121 2 310 250 0 0 chrX 31453266 31453334 -145520806 - L1MC5 LINE L1 -843 7118 7051 2468 78 3 0 chrX 31453435 31453744 -145520396 - AluSg SINE Alu 0 310 1 1303 253 26 10 chrX 31453744 31454026 -145520114 + L1M4 LINE L1 3455 3746 -2400 2503 84 3 0 chrX 31454026 31454337 -145519803 + AluSx SINE Alu 1 312 0 1303 253 26 10 chrX 31454337 31454445 -145519695 + L1M4 LINE L1 3746 3851 -2295 1870 189 3 6 chrX 31454445 31454757 -145519383 + AluJo SINE Alu 1 311 -1 2817 210 66 40 chrX 31454768 31455043 -145519097 + L1MA9 LINE L1 5509 5776 -536 180 77 0 0 chrX 31455043 31455069 -145519071 + (TA)n Simple_repeat Simple_repeat 1 26 0 2817 210 66 40 chrX 31455069 31455536 -145518604 + L1MA9 LINE L1 5776 6270 -42 1124 215 83 3 chrX 31455534 31455822 -145518318 + L1M4 LINE L1 3831 4141 -2005 * 968 271 74 17 chrX 31455819 31456442 -145517698 - L1MC/D LINE L1 -750 5396 4820 * 4292 135 39 17 chrX 31456595 31457291 -145516849 + MER50 LTR ERV1 1 711 -23 755 137 36 65 chrX 31457500 31457668 -145516472 - L1MB4 LINE L1 0 6180 6018 4025 182 84 30 chrX 31457679 31458489 -145515651 - MER21B LTR ERV1 0 904 3 1060 166 34 53 chrX 31458492 31458757 -145515383 - L1MB4 LINE L1 -158 6022 5763 306 73 0 0 chrX 31458791 31458832 -145515308 + (TA)n Simple_repeat Simple_repeat 2 42 0 2067 129 0 7 chrX 31458832 31459127 -145515013 - AluSx SINE Alu -19 293 1 2280 118 0 6 chrX 31459212 31459525 -145514615 + AluSq SINE Alu 1 311 -2 2426 68 0 0 chrX 31459691 31459985 -145514155 + AluY SINE Alu 1 294 -17 1654 121 83 7 chrX 31460098 31460387 -145513753 + AluSq SINE Alu 1 311 -2 2276 100 3 3 chrX 31460559 31460868 -145513272 - AluSc SINE Alu 0 309 1 325 132 0 19 chrX 31461041 31461094 -145513046 - Alu SINE Alu -7 293 242 2122 205 47 82 chrX 31461170 31461804 -145512336 + LTR9 LTR ERV1 1 612 0 1514 148 0 35 chrX 31461804 31462034 -145512106 - AluSx SINE Alu -90 222 1 2035 104 0 98 chrX 31462496 31462832 -145511308 + AluSx SINE Alu 3 305 -7 822 158 79 24 chrX 31462897 31463061 -145511079 + AluJo SINE Alu 127 299 -13 2399 75 0 7 chrX 31463295 31463601 -145510539 + AluY SINE Alu 7 310 -1 1846 132 14 7 chrX 31463616 31463925 -145510215 + AluSx SINE Alu 1 311 0 202 271 68 0 chrX 31464131 31464190 -145509950 + MIR3 SINE MIR 145 207 -1 1750 234 52 25 chrX 31464350 31464554 -145509586 - L1ME1 LINE L1 -289 5877 5680 2384 91 3 0 chrX 31464554 31464863 -145509277 - AluSx SINE Alu -2 310 1 1750 234 52 25 chrX 31464863 31465140 -145509000 - L1ME1 LINE L1 -486 5680 5383 2434 78 7 0 chrX 31465175 31465482 -145508658 + AluSg SINE Alu 1 309 -1 23 33 0 0 chrX 31465819 31465849 -145508291 + AT_rich Low_complexity Low_complexity 1 30 0 1845 169 0 22 chrX 31465931 31466250 -145507890 + AluJo SINE Alu 1 312 0 2228 93 3 3 chrX 31466317 31466606 -145507534 - AluSq SINE Alu -24 289 1 2274 85 3 57 chrX 31466750 31467081 -145507059 - AluSp SINE Alu 0 313 1 1912 143 14 4 chrX 31467100 31467405 -145506735 - AluSx SINE Alu 0 310 3 410 229 29 81 chrX 31467521 31467731 -145506409 - L1MC4 LINE L1 -1 8041 7843 2389 89 16 0 chrX 31467824 31468128 -145506012 + AluSx SINE Alu 1 309 -3 4629 149 15 42 chrX 31468129 31468978 -145505162 + L1PB4 LINE L1 4624 5494 -662 2576 68 0 3 chrX 31468978 31469288 -145504852 - AluSc SINE Alu 0 309 1 4629 149 15 42 chrX 31469288 31469634 -145504506 + L1PB4 LINE L1 5494 5789 -367 1804 154 0 55 chrX 31469634 31469959 -145504181 + AluJo SINE Alu 1 307 -5 4629 149 15 42 chrX 31469959 31470224 -145503916 + L1PB4 LINE L1 5789 6060 -96 1861 114 114 0 chrX 31470245 31470518 -145503622 + AluSx SINE Alu 1 304 -8 216 292 14 0 chrX 31470889 31470961 -145503179 + T-rich Low_complexity Low_complexity 3 180 0 2554 68 0 6 chrX 31470961 31471273 -145502867 - AluY SINE Alu 0 382 1 2387 91 0 7 chrX 31471274 31471583 -145502557 - AluSx SINE Alu -5 307 1 574 83 31 31 chrX 31471871 31471967 -145502173 + AluSp/q SINE Alu 212 307 -6 576 200 33 33 chrX 31472349 31472499 -145501641 - L1ME3 LINE L1 -1 6161 6012 2442 89 0 0 chrX 31472594 31472896 -145501244 + AluSx SINE Alu 1 302 -10 975 247 69 0 chrX 31473575 31473806 -145500334 - MER69 DNA AcHobo -979 247 1 1100 172 0 0 chrX 31473997 31474166 -145499974 - FRAM SINE Alu -3 173 5 1841 127 3 103 chrX 31474265 31474402 -145499738 + AluSp SINE Alu 1 150 -163 2274 98 0 7 chrX 31474402 31474697 -145499443 + AluSq SINE Alu 1 293 -20 1841 127 3 103 chrX 31474697 31474898 -145499242 + AluSp SINE Alu 150 305 -8 1357 178 4 13 chrX 31475504 31475729 -145498411 + MER58A DNA MER1_type 2 224 0 2221 100 10 0 chrX 31476003 31476292 -145497848 - AluSp SINE Alu -21 292 1 2067 118 3 3 chrX 31476400 31476689 -145497451 - AluSx SINE Alu -23 289 1 200 239 0 0 chrX 31476966 31477012 -145497128 - MER5B DNA MER1_type 0 178 133 466 205 43 5 chrX 31477014 31477039 -145497101 + CT-rich Low_complexity Low_complexity 1 24 -506 2349 98 0 3 chrX 31477039 31477336 -145496804 - AluSg1 SINE Alu -13 296 1 466 205 43 5 chrX 31477336 31477525 -145496615 + CT-rich Low_complexity Low_complexity 24 530 0 1062 114 6 12 chrX 31477525 31477691 -145496449 - L1MB7 LINE L1 -16 6168 6004 700 200 14 7 chrX 31477691 31477831 -145496309 - MER5B DNA MER1_type -37 141 1 1322 106 0 41 chrX 31478226 31478444 -145495696 - L1MA5A LINE L1 0 6297 6089 2228 123 0 0 chrX 31478565 31478865 -145495275 - AluSx SINE Alu -12 300 1 372 71 0 0 chrX 31478998 31479054 -145495086 + (GA)n Simple_repeat Simple_repeat 1 56 0 25 0 0 28 chrX 31479200 31479215 -145494925 + AT_rich Low_complexity Low_complexity 1 15 -20 324 0 0 0 chrX 31479215 31479251 -145494889 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 0 0 28 chrX 31479251 31479271 -145494869 + AT_rich Low_complexity Low_complexity 15 35 0 1624 111 0 5 chrX 31479271 31479487 -145494653 - AluSq SINE Alu -98 215 1 507 101 0 13 chrX 31479488 31479567 -145494573 - LTR49 LTR ERV1 -517 78 1 4317 124 11 0 chrX 31479576 31480195 -145493945 + MER41B LTR ERV1 10 635 0 245 56 83 0 chrX 31480195 31480231 -145493909 + LTR40a LTR ERVL 479 517 -2 5035 87 11 31 chrX 31481126 31481668 -145492472 + LTR8 LTR ERV1 1 527 -164 2346 92 3 10 chrX 31481668 31481972 -145492168 + AluSx SINE Alu 2 303 -9 5035 87 11 31 chrX 31481972 31482134 -145492006 + LTR8 LTR ERV1 527 691 0 783 260 72 3 chrX 31482624 31482929 -145491211 + L2 LINE L2 2755 3074 -239 2118 85 38 72 chrX 31482929 31483051 -145491089 + AluSp SINE Alu 1 126 -187 3388 44 7 0 chrX 31483051 31483464 -145490676 + L1PA6 LINE L1 5739 6154 0 2118 85 38 72 chrX 31483464 31483659 -145490481 + AluSp SINE Alu 126 307 -6 742 267 39 17 chrX 31483673 31483905 -145490235 + L2 LINE L2 3077 3313 0 398 248 93 0 chrX 31484108 31484237 -145489903 + MIR3 SINE MIR 30 170 -38 1314 232 80 32 chrX 31484361 31484762 -145489378 + LTR38 LTR ERV1 137 556 0 1936 82 96 28 chrX 31486396 31486678 -145487462 - AluSq SINE Alu -12 301 1 1132 287 47 13 chrX 31487184 31487817 -145486323 - L1MC/D LINE L1 -413 5757 5086 2468 97 3 0 chrX 31488342 31488652 -145485488 - AluSp SINE Alu -2 311 1 183 80 0 0 chrX 31489323 31489348 -145484792 + (A)n Simple_repeat Simple_repeat 1 25 0 3038 210 9 25 chrX 31489444 31490078 -145484062 - MLT1E3 LTR MaLR 0 624 1 421 254 89 52 chrX 31490133 31490346 -145483794 - L1MC5 LINE L1 -45 7916 7696 1082 235 82 132 chrX 31490346 31491029 -145483111 - MER77 LTR ERV1 -6 599 21 639 233 68 23 chrX 31491063 31491329 -145482811 - L1MC5 LINE L1 -273 7688 7411 2121 126 0 3 chrX 31491610 31491912 -145482228 - AluY SINE Alu -10 301 1 25 0 0 50 chrX 31492914 31492936 -145481204 + AT_rich Low_complexity Low_complexity 1 23 -15 270 0 0 0 chrX 31492936 31492966 -145481174 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2166 126 0 0 chrX 31492966 31493251 -145480889 - AluSx SINE Alu -27 285 1 25 0 0 50 chrX 31493251 31493267 -145480873 + AT_rich Low_complexity Low_complexity 21 38 0 1934 133 22 35 chrX 31493277 31493623 -145480517 - AluJb SINE Alu 0 342 1 2089 153 72 25 chrX 31494460 31494865 -145479275 + MSTA LTR MaLR 5 428 0 1144 169 14 10 chrX 31494869 31495076 -145479064 - MLT1A1 LTR MaLR -2 363 156 1004 105 12 0 chrX 31495083 31495183 -145478957 + (TTCC)n Simple_repeat Simple_repeat 4 108 -59 2031 130 0 52 chrX 31495183 31495507 -145478633 - AluSx SINE Alu -1 311 5 1004 105 12 0 chrX 31495507 31495568 -145478572 + (TTCC)n Simple_repeat Simple_repeat 108 167 0 183 156 0 0 chrX 31495566 31495598 -145478542 + CT-rich Low_complexity Low_complexity 2 33 0 * 781 188 0 0 chrX 31495608 31495741 -145478399 - FLAM_A SINE Alu 0 133 1 1101 101 0 36 chrX 31495741 31495900 -145478240 - MLT1A1 LTR MaLR -210 155 1 1695 97 9 0 chrX 31495922 31496149 -145477991 + MER30 DNA MER1_type 2 230 0 2059 139 0 16 chrX 31497836 31498139 -145476001 - AluJo SINE Alu -14 298 1 1011 161 0 0 chrX 31498356 31498536 -145475604 + (TA)n Simple_repeat Simple_repeat 1 180 0 5898 138 44 5 chrX 31498948 31499922 -145474218 + L1MC1 LINE L1 5316 6327 -6 1960 146 3 13 chrX 31499929 31500230 -145473910 - AluJo SINE Alu -14 298 1 1985 85 0 120 chrX 31500565 31500906 -145473234 - AluSg SINE Alu 0 300 1 3727 93 16 84 chrX 31500914 31501346 -145472794 - L1PA16 LINE L1 0 6166 5791 2100 125 7 3 chrX 31501346 31501649 -145472491 - AluSx SINE Alu -8 304 1 3727 93 16 84 chrX 31501649 31501862 -145472278 - L1PA16 LINE L1 -375 5791 5565 248 273 93 29 chrX 31502956 31503095 -145471045 - MLT2E LTR ERVL -6 622 475 240 290 0 14 chrX 31503435 31503504 -145470636 + MIR3 SINE MIR 138 205 -3 2410 86 0 3 chrX 31503636 31503938 -145470202 - AluSx SINE Alu -11 301 1 2193 90 0 21 chrX 31504611 31504925 -145469215 + AluSx SINE Alu 1 308 0 1554 143 101 8 chrX 31505043 31505301 -145468839 + AluJb SINE Alu 1 282 -30 1133 266 119 29 chrX 31505837 31506258 -145467882 + MLT1H1 LTR MaLR 1 459 -96 335 184 133 20 chrX 31506266 31506364 -145467776 - MER103 DNA DNA -13 153 45 392 118 15 0 chrX 31506808 31506876 -145467264 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1579 170 30 104 chrX 31506914 31507308 -145466832 + MLT1A1 LTR MaLR 1 365 0 329 42 0 21 chrX 31507441 31507450 -145466690 + (TG)n Simple_repeat Simple_repeat 1 55 0 329 42 0 21 chrX 31507450 31507498 -145466642 + (TG)n Simple_repeat Simple_repeat 2 48 0 1022 242 99 68 chrX 31507560 31507639 -145466501 - L1MC4a LINE L1 -1893 5915 5840 1846 137 10 40 chrX 31507639 31507938 -145466202 - AluJo SINE Alu -10 302 13 1022 242 99 68 chrX 31507938 31508136 -145466004 - L1MC4a LINE L1 -1968 5840 5620 1614 254 33 35 chrX 31508136 31508592 -145465548 + LTR16A1 LTR ERVL 3 457 0 1022 242 99 68 chrX 31508592 31508697 -145465443 - L1MC4a LINE L1 -2188 5620 5520 673 242 67 6 chrX 31508745 31508910 -145465230 + FAM SINE Alu 1 175 0 420 252 133 26 chrX 31509361 31509512 -145464628 + MIR SINE MIR 28 194 -68 2317 114 3 0 chrX 31509848 31510154 -145463986 + AluSx SINE Alu 1 307 -5 250 286 41 0 chrX 31510261 31510359 -145463781 + L3b LINE CR1 1282 1383 -200 210 329 71 0 chrX 31511045 31511115 -145463025 - MER91C DNA MER1_type -35 105 31 565 278 54 10 chrX 31511629 31511834 -145462306 - MIR SINE MIR -3 259 46 193 289 78 70 chrX 31512039 31512181 -145461959 - L2 LINE L2 -11 3302 3160 1178 208 78 20 chrX 31512336 31512832 -145461308 - MLT1G1 LTR MaLR -12 543 1 364 281 62 8 chrX 31513071 31513199 -145460941 + MIR SINE MIR 16 150 -112 1330 241 74 43 chrX 31513672 31514091 -145460049 - LTR16A1 LTR ERVL -17 440 9 299 96 19 0 chrX 31514350 31514402 -145459738 + (GA)n Simple_repeat Simple_repeat 1 53 0 361 100 83 0 chrX 31515374 31515434 -145458706 - MLT1A1 LTR MaLR -11 354 290 2547 54 0 0 chrX 31515572 31515869 -145458271 - AluY SINE Alu -14 297 1 1456 187 17 27 chrX 31515904 31516204 -145457936 - MLT1A1 LTR MaLR -68 297 1 1469 191 169 27 chrX 31516684 31517093 -145457047 + MLT1C LTR MaLR 1 467 0 216 97 0 0 chrX 31517406 31517437 -145456703 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 828 167 0 0 chrX 31517485 31517623 -145456517 + FRAM SINE Alu 38 175 -1 184 286 82 51 chrX 31518142 31518240 -145455900 - MIR SINE MIR -47 215 115 246 286 46 81 chrX 31518265 31518422 -145455718 + MIR SINE MIR 31 181 -62 2261 92 0 0 chrX 31518442 31518754 -145455386 - AluSg SINE Alu 0 312 1 1499 177 0 78 chrX 31518809 31519142 -145454998 - AluJb SINE Alu -5 307 1 2919 10 0 0 chrX 31519303 31519614 -145454526 + AluY SINE Alu 1 311 0 187 296 0 57 chrX 31519641 31519729 -145454411 - MIR SINE MIR -160 102 20 373 308 0 0 chrX 31520395 31520486 -145453654 + MLT1K LTR MaLR 140 230 -358 180 0 0 0 chrX 31520490 31520510 -145453630 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2705 43 0 0 chrX 31520602 31520904 -145453236 - AluY SINE Alu -9 302 1 2404 90 0 6 chrX 31521451 31521762 -145452378 - AluSg SINE Alu -1 309 1 1503 181 0 75 chrX 31521817 31522149 -145451991 - AluJb SINE Alu -5 307 1 212 296 0 57 chrX 31522322 31522410 -145451730 - MIR SINE MIR -160 102 20 369 308 0 0 chrX 31523076 31523167 -145450973 + MLT1K LTR MaLR 140 230 -358 180 0 0 0 chrX 31523171 31523191 -145450949 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2704 40 0 0 chrX 31523283 31523586 -145450554 - AluY SINE Alu -8 303 1 2407 93 0 6 chrX 31524133 31524446 -145449694 - AluSx SINE Alu -1 311 1 898 101 13 13 chrX 31525214 31525363 -145448777 + (TTTC)n Simple_repeat Simple_repeat 1 149 0 270 116 0 0 chrX 31525363 31525406 -145448734 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 * 407 104 0 15 chrX 31525400 31525467 -145448673 + (TTTC)n Simple_repeat Simple_repeat 4 69 0 396 250 44 0 chrX 31525682 31525796 -145448344 - L1MC4a LINE L1 -181 5940 5820 208 69 0 0 chrX 31525797 31525826 -145448314 - L2 LINE L2 -3 3310 3282 417 263 39 36 chrX 31525845 31526040 -145448100 + MLT1H LTR MaLR 20 244 -241 258 223 22 54 chrX 31526100 31526231 -145447909 + MLT1H LTR MaLR 416 533 -16 317 260 195 0 chrX 31526258 31526335 -145447805 - L2 LINE L2 -27 3286 3195 2476 129 26 11 chrX 31526336 31526715 -145447425 - MSTB LTR MaLR 0 426 42 2330 119 19 28 chrX 31526746 31527106 -145447034 - THE1B LTR MaLR 0 364 8 1976 119 4 4 chrX 31527106 31527384 -145446756 - AluJb SINE Alu -33 279 2 369 60 40 0 chrX 31527385 31527435 -145446705 - MSTB LTR MaLR -374 52 1 760 284 136 30 chrX 31527898 31528236 -145445904 + LTR16A LTR ERVL 16 389 -61 2201 108 3 3 chrX 31528351 31528647 -145445493 - AluSp SINE Alu -17 296 1 2399 101 7 0 chrX 31528658 31528966 -145445174 - AluSg SINE Alu 0 310 1 451 242 242 6 chrX 31529026 31529208 -145444932 + MIR SINE MIR 20 244 -18 191 324 88 59 chrX 31529237 31529349 -145444791 + L2 LINE L2 3089 3209 -63 6330 112 35 0 chrX 31529349 31530610 -145443530 - L1PA13 LINE L1 -11 6152 4865 191 324 88 59 chrX 31530610 31530667 -145443473 + L2 LINE L2 3209 3263 -9 1299 117 8 76 chrX 31530669 31530753 -145443387 + L1MA5 LINE L1 6064 6152 -148 2091 128 0 22 chrX 31530753 31531066 -145443074 - AluSx SINE Alu -6 306 1 1299 117 8 76 chrX 31531066 31531230 -145442910 + L1MA5 LINE L1 6152 6295 -5 2380 98 0 6 chrX 31531634 31531949 -145442191 + AluSq SINE Alu 1 313 0 29 0 0 0 chrX 31532300 31532329 -145441811 + AT_rich Low_complexity Low_complexity 1 29 0 838 165 0 0 chrX 31532330 31532457 -145441683 - FLAM_C SINE Alu -16 127 1 1568 295 44 0 chrX 31532488 31532919 -145441221 - LTR16A LTR ERVL 0 450 1 293 348 143 38 chrX 31532935 31532990 -145441150 + L2 LINE L2 2829 2877 -395 2533 70 3 0 chrX 31532990 31533292 -145440848 - AluSp SINE Alu -10 303 1 2205 120 0 0 chrX 31533292 31533591 -145440549 - AluSx SINE Alu -13 299 1 293 348 143 38 chrX 31533591 31533934 -145440206 + L2 LINE L2 2876 3270 -2 337 252 0 63 chrX 31534654 31534765 -145439375 - MLT1K LTR MaLR -15 573 470 1460 237 76 48 chrX 31534913 31535117 -145439023 - L2 LINE L2 -4 3309 3112 2219 124 0 6 chrX 31535117 31535431 -145438709 + AluJb SINE Alu 1 312 0 1460 237 76 48 chrX 31535431 31535961 -145438179 - L2 LINE L2 -201 3112 2568 2200 96 3 0 chrX 31537357 31537649 -145436491 - AluSp SINE Alu -6 307 15 693 265 30 6 chrX 31537751 31537917 -145436223 - MER97c DNA MER1_type? -911 179 10 568 219 0 16 chrX 31537954 31538077 -145436063 + L2 LINE L2 3193 3313 0 238 277 24 0 chrX 31538558 31538641 -145435499 - L1ME3A LINE L1 -233 5937 5853 475 252 36 0 chrX 31538656 31538767 -145435373 - MER91C DNA MER1_type -15 125 11 960 284 88 18 chrX 31538772 31539266 -145434874 + MLT1H1 LTR MaLR 1 492 -63 526 218 200 53 chrX 31539264 31539434 -145434706 - LTR16A LTR ERVL -187 263 69 * 1384 144 0 9 chrX 31539434 31539656 -145434484 - L1 LINE L1 -1894 4252 4033 236 197 82 0 chrX 31539635 31539696 -145434444 - L1ME3A LINE L1 -361 5803 5738 * 12354 51 3 0 chrX 31539720 31541265 -145432875 + L1P LINE L1 1904 3453 -2693 387 291 60 42 chrX 31541372 31541657 -145432483 - L1M4 LINE L1 -1262 4884 4595 1680 224 113 13 chrX 31541749 31542208 -145431932 + MLT1D LTR MaLR 1 505 0 2245 263 51 10 chrX 31542671 31543371 -145430769 - HAL1 LINE L1 -625 1882 1154 1065 304 89 23 chrX 31543388 31544218 -145429922 - L1M4 LINE L1 -1979 4167 3140 1603 185 34 14 chrX 31544218 31544515 -145429625 - AluJo SINE Alu -9 303 1 1065 304 89 23 chrX 31544515 31544616 -145429524 - L1M4 LINE L1 -3006 3140 3047 2166 182 32 11 chrX 31544641 31545211 -145428929 - L1MD2 LINE L1 -13 6346 5716 348 270 59 13 chrX 31545101 31545253 -145428887 - L1PA14 LINE L1 -336 5825 5667 * 1228 249 32 41 chrX 31545231 31545532 -145428608 - L1M4 LINE L1 -1878 4766 4466 2213 99 3 0 chrX 31545532 31545845 -145428295 - AluSx SINE Alu 0 314 1 1228 249 32 41 chrX 31545845 31545884 -145428256 - L1M4 LINE L1 -2178 4466 4428 2833 144 16 94 chrX 31545935 31546544 -145427596 - L1MB5 LINE L1 -36 6138 5577 1238 213 37 4 chrX 31546666 31546910 -145427230 - L1M4 LINE L1 -6286 256 5 1485 231 44 41 chrX 31546921 31547380 -145426760 - L1M4 LINE L1 -2204 4440 3981 812 167 35 14 chrX 31547381 31547525 -145426615 + AluJo SINE Alu 1 147 -165 22101 183 74 17 chrX 31547532 31550283 -145423857 + L1M1 LINE L1 32 2624 -4941 2181 131 0 3 chrX 31550283 31550596 -145423544 + AluSq SINE Alu 1 312 -1 22101 183 74 17 chrX 31550596 31552541 -145421599 + L1M1 LINE L1 2624 4456 -3109 1922 140 49 7 chrX 31552541 31552827 -145421313 + AluJb SINE Alu 1 298 -14 22101 183 74 17 chrX 31552827 31554113 -145420027 + L1M1 LINE L1 4456 6372 -1193 875 155 14 20 chrX 31554113 31554261 -145419879 - AluJo SINE Alu -162 150 4 796 125 100 0 chrX 31554493 31554613 -145419527 - MER20 DNA MER1_type 0 219 88 2845 196 39 11 chrX 31554630 31555273 -145418867 - L1MDa LINE L1 -4143 2397 1737 1286 222 10 7 chrX 31555249 31555546 -145418594 - L1M4 LINE L1 -1327 5213 4916 * 251 291 35 0 chrX 31605601 31605687 -145368453 + HAL1b LINE L1 840 928 -420 52 30 0 0 chrX 31605834 31605900 -145368240 + AT_rich Low_complexity Low_complexity 1 66 0 691 116 0 147 chrX 31605919 31606048 -145368092 - FLAM_C SINE Alu -32 111 2 27 0 0 0 chrX 31606051 31606078 -145368062 + AT_rich Low_complexity Low_complexity 1 27 0 1076 62 0 0 chrX 31606332 31606461 -145367679 + AluY SINE Alu 1 129 -182 2078 106 11 0 chrX 31606661 31606973 -145367167 - AluSx SINE Alu 0 315 1 185 339 0 0 chrX 31607202 31607258 -145366882 - MIR SINE MIR -9 253 198 2437 58 0 32 chrX 31607888 31608200 -145365940 + AluY SINE Alu 1 302 -9 2390 97 0 3 chrX 31609058 31609367 -145364773 + AluSx SINE Alu 1 308 -4 1583 168 118 1 chrX 31610082 31610412 -145363728 + L1MB4 LINE L1 5813 6179 -1 461 245 64 64 chrX 31610817 31611005 -145363135 + L1MC4 LINE L1 7471 7658 -384 1559 152 86 0 chrX 31611025 31611281 -145362859 - AluJo SINE Alu -33 279 2 1859 138 34 10 chrX 31611365 31611662 -145362478 + AluJo SINE Alu 1 304 -8 961 144 0 45 chrX 31611708 31611936 -145362204 + AluJb SINE Alu 1 312 0 2254 94 0 3 chrX 31611941 31612238 -145361902 + AluSg SINE Alu 1 296 -14 644 236 80 34 chrX 31612298 31612535 -145361605 + L1MC4 LINE L1 7795 8042 0 26 50 0 0 chrX 31612635 31612675 -145361465 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chrX 31613162 31613183 -145360957 + AT_rich Low_complexity Low_complexity 1 21 0 224 303 189 51 chrX 31613294 31613469 -145360671 - L2 LINE L2 -1 3312 3114 22 70 0 0 chrX 31613566 31613609 -145360531 + AT_rich Low_complexity Low_complexity 1 43 0 2522 53 3 0 chrX 31614486 31614786 -145359354 - AluY SINE Alu -9 302 2 802 133 26 0 chrX 31615654 31615767 -145358373 - FLAM_C SINE Alu -16 117 2 30 0 0 0 chrX 31616083 31616113 -145358027 + AT_rich Low_complexity Low_complexity 1 30 0 2123 122 0 0 chrX 31616116 31616402 -145357738 + AluSx SINE Alu 1 286 -26 1636 139 14 48 chrX 31616426 31616742 -145357398 + AluSx SINE Alu 1 306 0 1855 156 7 3 chrX 31616752 31617041 -145357099 + AluJo SINE Alu 1 290 -22 535 114 0 49 chrX 31617041 31617164 -145356976 + (CA)n Simple_repeat Simple_repeat 1 117 0 602 238 7 66 chrX 31617193 31617344 -145356796 - HAL1 LINE L1 -1708 799 658 669 185 39 135 chrX 31617347 31617558 -145356582 + HAL1 LINE L1 772 955 -1552 351 0 0 0 chrX 31617558 31617597 -145356543 + (CA)n Simple_repeat Simple_repeat 2 40 0 669 185 39 135 chrX 31617597 31617644 -145356496 + HAL1 LINE L1 955 1005 -1502 970 110 144 0 chrX 31617644 31617817 -145356323 + L1MC3 LINE L1 6901 7098 -687 337 217 33 11 chrX 31617818 31617905 -145356235 + MLT1F1 LTR MaLR 37 126 -437 2071 130 7 3 chrX 31617905 31618206 -145355934 + AluSx SINE Alu 1 302 -10 209 176 0 20 chrX 31618313 31618350 -145355790 + (TA)n Simple_repeat Simple_repeat 2 39 -12 2301 92 3 0 chrX 31618350 31618644 -145355496 - AluSq SINE Alu -18 295 1 209 176 0 20 chrX 31618644 31618657 -145355483 + (TA)n Simple_repeat Simple_repeat 39 51 0 2561 68 3 0 chrX 31619140 31619450 -145354690 + AluY SINE Alu 1 311 0 2064 123 6 25 chrX 31619574 31619892 -145354248 + AluJb SINE Alu 1 312 0 286 180 33 0 chrX 31619898 31619959 -145354181 + HAL1 LINE L1 1120 1182 -1325 734 132 116 47 chrX 31620007 31620136 -145354004 + AluJo SINE Alu 2 139 -173 2018 227 144 79 chrX 31620142 31620657 -145353483 + HAL1 LINE L1 1167 1647 -860 1884 139 17 3 chrX 31620657 31620958 -145353182 + AluJo SINE Alu 1 305 -7 2018 227 144 79 chrX 31620958 31621178 -145352962 + HAL1 LINE L1 1647 1851 -656 2367 89 0 10 chrX 31621178 31621492 -145352648 + AluY SINE Alu 1 311 0 2467 86 0 3 chrX 31621496 31621809 -145352331 + AluSq SINE Alu 1 312 -1 2194 92 0 48 chrX 31621816 31622130 -145352010 + AluSg SINE Alu 1 299 -11 2018 227 144 79 chrX 31622130 31622639 -145351501 + HAL1 LINE L1 1858 2507 0 2093 106 3 11 chrX 31623767 31624074 -145350066 - AluSq SINE Alu 0 307 3 241 236 189 31 chrX 31624523 31624650 -145349490 + L1MC5 LINE L1 7754 7900 -61 1304 154 36 22 chrX 31625087 31625464 -145348676 + MLT1C LTR MaLR 6 380 -48 2186 107 3 0 chrX 31625469 31625759 -145348381 - AluSx SINE Alu -21 291 1 317 24 24 0 chrX 31626198 31626240 -145347900 + (TG)n Simple_repeat Simple_repeat 2 44 0 2009 162 41 62 chrX 31629032 31629416 -145344724 + MER31B LTR ERV1 1 375 -91 1777 157 3 7 chrX 31629416 31629709 -145344431 - AluJo SINE Alu -20 292 1 2009 162 41 62 chrX 31629709 31629792 -145344348 + MER31B LTR ERV1 375 458 -8 2264 91 3 26 chrX 31630100 31630408 -145343732 - AluSx SINE Alu -11 301 1 284 68 45 0 chrX 31630754 31630798 -145343342 + MADE1 DNA Mariner 35 80 0 4759 66 3 0 chrX 31631152 31631741 -145342399 - LTR10C LTR ERV1 0 591 1 2243 92 0 3 chrX 31631823 31632106 -145342034 + AluSp SINE Alu 1 282 -31 180 0 0 0 chrX 31632110 31632130 -145342010 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2184 94 0 17 chrX 31632135 31632445 -145341695 + AluSx SINE Alu 1 305 0 4583 116 35 70 chrX 31632888 31633129 -145341011 - MER4E LTR ERV1 0 779 531 1624 116 0 0 chrX 31633129 31633344 -145340796 + AluSg/x SINE Alu 90 304 -6 4583 116 35 70 chrX 31633344 31633910 -145340230 - MER4E LTR ERV1 -248 531 1 1359 129 174 34 chrX 31633945 31634082 -145340058 + AluJb SINE Alu 2 118 -184 1996 142 0 3 chrX 31634082 31634384 -145339756 + AluSx SINE Alu 1 301 -11 1359 129 174 34 chrX 31634384 31634510 -145339630 + AluJb SINE Alu 118 302 0 213 237 0 17 chrX 31634856 31634915 -145339225 + A-rich Low_complexity Low_complexity 3 60 0 5178 75 7 24 chrX 31634961 31635114 -145339026 + LTR8 LTR ERV1 1 155 -536 2005 110 3 38 chrX 31635114 31635439 -145338701 + AluSx SINE Alu 1 315 0 5178 75 7 24 chrX 31635439 31635821 -145338319 + LTR8 LTR ERV1 155 525 -166 2285 101 7 0 chrX 31635821 31636129 -145338011 + AluSq SINE Alu 1 310 -3 5178 75 7 24 chrX 31636129 31636294 -145337846 + LTR8 LTR ERV1 525 691 0 1844 162 3 3 chrX 31636444 31636741 -145337399 + AluJo SINE Alu 6 302 -10 2154 130 198 7 chrX 31636756 31636963 -145337177 + LTR54 LTR ERV1 6 172 -338 2355 98 7 0 chrX 31636963 31637270 -145336870 - AluSx SINE Alu -1 311 3 2154 130 198 7 chrX 31637270 31637486 -145336654 + LTR54 LTR ERV1 172 510 0 1985 119 7 10 chrX 31637868 31638024 -145336116 - AluSx SINE Alu -19 293 137 2620 44 0 0 chrX 31638024 31638321 -145335819 - AluY SINE Alu -14 297 1 1985 119 7 10 chrX 31638321 31638458 -145335682 - AluSx SINE Alu -175 137 1 683 253 95 5 chrX 31639008 31639198 -145334942 - MER58C DNA MER1_type -8 207 1 393 103 0 0 chrX 31639198 31639256 -145334884 - MER4E LTR ERV1 0 779 722 398 76 136 0 chrX 31639258 31639324 -145334816 - MER4A LTR ERV1 -589 75 1 3949 121 72 32 chrX 31639325 31640005 -145334135 - MER4D LTR ERV1 -196 707 1 1706 158 13 26 chrX 31640218 31640522 -145333618 - AluJb SINE Alu -12 300 1 2292 96 10 0 chrX 31640695 31640987 -145333153 + AluSg SINE Alu 1 295 -15 3902 171 30 10 chrX 31641031 31641310 -145332830 + MER72 LTR ERV1 5 277 -445 2301 110 7 0 chrX 31641310 31641609 -145332531 + AluSq SINE Alu 1 301 -12 3902 171 30 10 chrX 31641609 31642033 -145332107 + MER72 LTR ERV1 277 722 0 312 269 0 32 chrX 31642158 31642251 -145331889 - L2 LINE L2 0 3313 3224 2215 184 23 113 chrX 31642275 31642632 -145331508 - MLT2B3 LTR ERVL 0 554 273 2163 131 0 13 chrX 31642632 31642938 -145331202 + AluSx SINE Alu 1 302 -10 2215 184 23 113 chrX 31642938 31643189 -145330951 - MLT2B3 LTR ERVL -281 273 1 2029 125 3 17 chrX 31643391 31643708 -145330432 - AluSx SINE Alu 0 312 1 2274 106 0 6 chrX 31643723 31644035 -145330105 - AluSg SINE Alu 0 310 1 1151 82 0 0 chrX 31644035 31644170 -145329970 - AluSq/x SINE Alu -177 135 1 1438 190 0 16 chrX 31644196 31644449 -145329691 - MER72 LTR ERV1 -469 253 5 884 136 157 0 chrX 31644493 31644640 -145329500 - AluSg/x SINE Alu -6 304 135 1466 142 59 139 chrX 31644767 31645121 -145329019 + MLT1B LTR MaLR 1 318 -72 1934 131 11 3 chrX 31645121 31645443 -145328697 - AluSx SINE Alu 0 324 1 1466 142 59 139 chrX 31645443 31645511 -145328629 + MLT1B LTR MaLR 318 390 0 2307 92 0 0 chrX 31645914 31646233 -145327907 - AluSx SINE Alu 0 319 1 2143 87 3 14 chrX 31646484 31646797 -145327343 + AluSx SINE Alu 1 310 0 226 344 106 19 chrX 31646803 31646963 -145327177 + L1ME LINE L1 5481 5654 -467 857 137 0 0 chrX 31646965 31647089 -145327051 + FLAM_C SINE Alu 3 126 -7 249 57 0 0 chrX 31647096 31647131 -145327009 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2281 112 3 0 chrX 31647153 31647465 -145326675 + AluSq SINE Alu 1 313 0 919 146 44 0 chrX 31647496 31647654 -145326486 + L1PA16 LINE L1 6000 6164 -2 26 0 0 0 chrX 31647667 31647693 -145326447 + AT_rich Low_complexity Low_complexity 1 26 0 2299 99 3 0 chrX 31647893 31648195 -145325945 + AluSx SINE Alu 1 303 -9 1907 153 0 0 chrX 31648266 31648571 -145325569 - AluJo SINE Alu 0 305 1 398 332 42 53 chrX 31648741 31649102 -145325038 + L1MC4a LINE L1 4675 5031 -1115 2136 103 0 42 chrX 31649103 31649415 -145324725 + AluY SINE Alu 2 300 -11 1398 95 0 0 chrX 31649415 31649587 -145324553 + AluSg/x SINE Alu 134 308 -4 2208 106 30 3 chrX 31649587 31649888 -145324252 + AluSg1 SINE Alu 1 309 0 435 241 117 28 chrX 31649978 31650307 -145323833 + L1MC4a LINE L1 5127 5491 -743 668 218 12 24 chrX 31650339 31650504 -145323636 + L1MC4a LINE L1 5687 5849 -1959 485 122 0 3 chrX 31650559 31650791 -145323349 + AluSx SINE Alu 1 298 -12 22 0 0 0 chrX 31650848 31650870 -145323270 + AT_rich Low_complexity Low_complexity 1 22 0 732 169 39 8 chrX 31650870 31651000 -145323140 - AluSq/x SINE Alu -177 135 2 2502 67 0 7 chrX 31651008 31651306 -145322834 - AluSc SINE Alu -13 296 1 2732 26 3 0 chrX 31651317 31651623 -145322517 - AluY SINE Alu -4 307 1 401 71 95 71 chrX 31651625 31651709 -145322431 - L1MB8 LINE L1 0 6178 6093 2500 146 46 72 chrX 31651728 31652086 -145322054 - L1MB4 LINE L1 -6 6174 5833 1724 128 4 0 chrX 31652086 31652335 -145321805 - AluSx SINE Alu -62 250 1 2500 146 46 72 chrX 31652335 31652502 -145321638 - L1MB4 LINE L1 -347 5833 5663 1852 105 79 0 chrX 31652592 31652858 -145321282 + AluSq SINE Alu 3 289 -24 2626 47 0 0 chrX 31653622 31653921 -145320219 + AluY SINE Alu 1 299 -12 2232 111 3 0 chrX 31654508 31654806 -145319334 + AluSx SINE Alu 1 299 -13 800 159 0 8 chrX 31654840 31654966 -145319174 - FLAM_C SINE Alu -8 125 1 2170 129 0 0 chrX 31655383 31655685 -145318455 + AluSx SINE Alu 1 302 -10 2248 99 13 3 chrX 31655704 31656007 -145318133 + AluSx SINE Alu 1 306 -6 2088 102 21 11 chrX 31657473 31657756 -145316384 + AluSg SINE Alu 5 290 -20 2189 128 0 0 chrX 31657872 31658170 -145315970 + AluSg SINE Alu 1 298 -12 269 130 22 0 chrX 31658196 31658242 -145315898 - MER41A LTR ERV1 0 554 508 1356 206 137 49 chrX 31658262 31658751 -145315389 - LTR10B LTR ERV1 -3 544 13 934 107 43 0 chrX 31658769 31658909 -145315231 - MER41B LTR ERV1 -43 592 447 1165 90 0 0 chrX 31658909 31659064 -145315076 - AluSg/x SINE Alu 0 310 156 2071 101 25 11 chrX 31659068 31659354 -145314786 - AluSx SINE Alu -22 290 1 2091 89 0 24 chrX 31659354 31659647 -145314493 - MER41A LTR ERV1 -185 369 84 627 180 0 9 chrX 31659647 31659758 -145314382 - AluJ SINE Alu -68 244 135 815 87 36 80 chrX 31659758 31659896 -145314244 - AluJ SINE Alu -170 132 1 414 244 272 22 chrX 31659900 31660080 -145314060 + MIR SINE MIR 21 245 -17 2242 109 3 0 chrX 31660083 31660377 -145313763 + AluSx SINE Alu 1 295 -17 2147 125 3 0 chrX 31660900 31661195 -145312945 - AluSx SINE Alu -16 296 1 9245 83 21 101 chrX 31661727 31662012 -145312128 + Tigger1 DNA MER2_type 2 308 -2110 2492 84 0 0 chrX 31662012 31662320 -145311820 - AluSq SINE Alu -5 308 1 9245 83 21 101 chrX 31662320 31662397 -145311743 + Tigger1 DNA MER2_type 308 390 -2028 2103 116 3 31 chrX 31662397 31662717 -145311423 - AluSq SINE Alu -2 311 1 9245 83 21 101 chrX 31662717 31663898 -145310242 + Tigger1 DNA MER2_type 390 1422 -996 2329 116 0 0 chrX 31663907 31664217 -145309923 - AluSg SINE Alu 0 310 1 1866 77 0 0 chrX 31664245 31664467 -145309673 - AluSc SINE Alu -58 251 30 1557 128 4 4 chrX 31664567 31664832 -145309308 + AluSp SINE Alu 63 313 0 2344 101 0 0 chrX 31664841 31665149 -145308991 + AluSg SINE Alu 1 308 -2 914 138 66 30 chrX 31665176 31665343 -145308797 + FAM SINE Alu 1 46 -3 5922 133 20 5 chrX 31665351 31665839 -145308301 + Tigger1 DNA MER2_type 1465 1975 -443 2083 123 0 16 chrX 31665839 31666156 -145307984 - AluSx SINE Alu 0 312 1 5922 133 20 5 chrX 31666156 31666607 -145307533 + Tigger1 DNA MER2_type 1975 2418 0 195 42 0 0 chrX 31666611 31666635 -145307505 + (TATATG)n Simple_repeat Simple_repeat 5 28 0 2089 145 0 13 chrX 31666791 31667102 -145307038 + AluJo SINE Alu 1 307 -5 2259 116 3 0 chrX 31667143 31667437 -145306703 + AluSx SINE Alu 2 296 -16 2249 99 0 0 chrX 31667538 31667843 -145306297 - AluSg SINE Alu 0 305 1 207 0 0 0 chrX 31667850 31667873 -145306267 + (T)n Simple_repeat Simple_repeat 1 23 0 2850 75 13 5 chrX 31667896 31668268 -145305872 + THE1C LTR MaLR 1 375 0 10593 113 33 12 chrX 31668269 31669627 -145304513 + THE1C-int LTR MaLR 2 1398 -182 2232 122 0 3 chrX 31669627 31669930 -145304210 + AluSq SINE Alu 1 302 -11 10593 113 33 12 chrX 31669930 31670117 -145304023 + THE1C-int LTR MaLR 1398 1580 0 2334 91 18 35 chrX 31670132 31670253 -145303887 + THE1C LTR MaLR 41 163 -212 2073 142 7 0 chrX 31670253 31670556 -145303584 - AluSx SINE Alu -7 305 1 2334 91 18 35 chrX 31670556 31670775 -145303365 + THE1C LTR MaLR 163 375 0 1224 233 43 16 chrX 31670952 31671280 -145302860 + MLT1E LTR MaLR 1 439 -154 1636 170 66 10 chrX 31671280 31671568 -145302572 + AluJo SINE Alu 3 306 -6 1224 233 43 16 chrX 31671568 31671722 -145302418 + MLT1E LTR MaLR 439 587 -6 1486 211 43 56 chrX 31671728 31672039 -145302101 + MLT1E-int LTR MaLR 1 315 -1056 2199 134 3 0 chrX 31672039 31672346 -145301794 - AluSx SINE Alu -4 308 1 1486 211 43 56 chrX 31672346 31672560 -145301580 + MLT1E-int LTR MaLR 315 638 -733 1974 117 35 90 chrX 31672612 31672902 -145301238 - MER7A DNA MER2_type -2692 346 42 1468 183 17 31 chrX 31672902 31673191 -145300949 - AluJo SINE Alu -10 302 18 1974 117 35 90 chrX 31673191 31673210 -145300930 - MER7A DNA MER2_type -2996 42 24 2177 114 0 35 chrX 31673210 31673381 -145300759 - AluSx SINE Alu -8 304 147 2411 78 0 7 chrX 31673381 31673677 -145300463 - AluSc SINE Alu -15 294 1 2177 114 0 35 chrX 31673677 31673820 -145300320 - AluSx SINE Alu -165 147 1 1974 117 35 90 chrX 31673820 31673876 -145300264 - MER7A DNA MER2_type -3014 24 2 269 265 59 0 chrX 31674111 31674179 -145299961 + MLT1E-int LTR MaLR 820 891 -480 286 241 0 0 chrX 31674281 31674339 -145299801 + MLT1E-int LTR MaLR 962 1019 -352 2303 103 0 3 chrX 31674369 31674669 -145299471 - AluSx SINE Alu -13 299 1 455 144 9 90 chrX 31674709 31674820 -145299320 + MLT1F LTR MaLR 441 542 0 2155 115 0 26 chrX 31674901 31675214 -145298926 + AluSx SINE Alu 1 305 -7 1375 137 208 8 chrX 31675214 31675455 -145298685 + AluSg1 SINE Alu 1 289 -20 2281 101 7 7 chrX 31675515 31675823 -145298317 - AluSg SINE Alu 0 310 3 282 238 19 19 chrX 31675865 31675996 -145298144 - L1M3 LINE L1 -364 5798 5726 270 0 43 43 chrX 31675996 31676043 -145298097 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 832 216 5 26 chrX 31676045 31676091 -145298049 - AluJb SINE Alu -2 310 265 4873 90 16 42 chrX 31676091 31676626 -145297514 + LTR8 LTR ERV1 1 549 -142 2419 79 0 0 chrX 31676626 31676917 -145297223 + AluSg SINE Alu 1 291 -19 2320 107 3 0 chrX 31676927 31677235 -145296905 + AluSp SINE Alu 1 309 -4 4873 90 16 42 chrX 31677235 31677398 -145296742 + LTR8 LTR ERV1 558 691 0 832 216 5 26 chrX 31677398 31677541 -145296599 - AluJb SINE Alu -47 265 125 968 142 0 0 chrX 31677555 31677696 -145296444 - FLAM_C SINE Alu 0 143 3 2133 121 14 0 chrX 31677753 31678050 -145296090 - AluSx SINE Alu -11 301 1 682 240 47 0 chrX 31678052 31678202 -145295938 - MER63 DNA MER1_type -53 783 1 428 237 92 16 chrX 31678227 31678450 -145295690 - L1M3 LINE L1 -462 5659 5423 * 458 222 27 97 chrX 31678447 31678632 -145295508 - L1MA10 LINE L1 -1 6333 6162 1135 139 25 64 chrX 31678635 31678679 -145295461 - MLT1A1 LTR MaLR 0 365 321 2520 61 0 3 chrX 31678679 31678975 -145295165 + AluY SINE Alu 1 295 -16 1135 139 25 64 chrX 31678975 31679132 -145295008 - MLT1A1 LTR MaLR -44 321 172 832 137 7 52 chrX 31679137 31679290 -145294850 + Ricksha DNA DNA 202 347 -2899 1416 141 0 41 chrX 31679290 31679510 -145294630 + MLT2B2 LTR ERVL 1 211 -304 468 0 0 0 chrX 31679514 31679566 -145294574 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 270 150 0 0 chrX 31679574 31679614 -145294526 + AluS SINE Alu 232 271 -31 677 149 6 0 chrX 31679616 31679791 -145294349 + (TA)n Simple_repeat Simple_repeat 2 177 0 327 25 0 0 chrX 31679793 31679833 -145294307 + (CA)n Simple_repeat Simple_repeat 2 41 0 597 143 10 0 chrX 31679833 31679931 -145294209 - AluJ/FLAM SINE Alu -211 101 3 1894 176 49 42 chrX 31679933 31680360 -145293780 - L1ME1 LINE L1 -340 5826 5397 570 120 9 65 chrX 31680387 31680495 -145293645 - AluJo SINE Alu -91 221 120 1415 165 70 6 chrX 31680495 31680811 -145293329 - L1ME1 LINE L1 -761 5385 5050 1316 203 69 74 chrX 31680849 31680942 -145293198 + L1MEc LINE L1 1543 1635 -4761 2259 70 0 0 chrX 31680942 31681213 -145292927 + AluSg SINE Alu 31 301 -9 1316 203 69 74 chrX 31681213 31681290 -145292850 + L1MEc LINE L1 1635 1711 -4685 1509 153 0 0 chrX 31681290 31681513 -145292627 + AluJb SINE Alu 85 307 -5 1316 203 69 74 chrX 31681513 31681605 -145292535 + L1MEc LINE L1 1711 1802 -4594 1648 216 84 53 chrX 31681605 31681664 -145292476 - MLT1D LTR MaLR 0 505 449 2111 98 7 39 chrX 31681664 31681970 -145292170 - AluSx SINE Alu -16 296 1 1648 216 84 53 chrX 31681970 31682400 -145291740 - MLT1D LTR MaLR -56 449 1 1316 203 69 74 chrX 31682400 31682569 -145291571 + L1MEc LINE L1 1802 1974 -4422 26 30 0 0 chrX 31682581 31682614 -145291526 + AT_rich Low_complexity Low_complexity 1 33 0 270 174 0 0 chrX 31682624 31682670 -145291470 + MSTA LTR MaLR 1 46 -382 1557 138 23 112 chrX 31682675 31683023 -145291117 - AluYb8 SINE Alu -1 317 1 1056 90 0 0 chrX 31683047 31683180 -145290960 - AluSq/x SINE Alu -179 133 1 424 192 0 0 chrX 31683182 31683255 -145290885 + MSTA LTR MaLR 38 110 -318 * 901 97 152 0 chrX 31683250 31683395 -145290745 + MSTA LTR MaLR 250 416 -12 734 160 0 17 chrX 31683395 31683514 -145290626 - FLAM_C SINE Alu -25 118 2 1734 195 0 0 chrX 31683700 31683997 -145290143 + AluJb SINE Alu 1 297 -15 281 289 199 21 chrX 31683998 31684289 -145289851 - L1ME LINE L1 -563 5599 5257 1911 118 0 0 chrX 31684327 31684582 -145289558 + AluSq SINE Alu 1 255 -58 2288 110 3 0 chrX 31684595 31684896 -145289244 + AluSp SINE Alu 1 302 -11 1939 129 18 7 chrX 31684966 31685252 -145288888 - AluJb SINE Alu -13 299 11 280 301 129 32 chrX 31685356 31685635 -145288505 - L1ME1 LINE L1 -1118 5028 4723 227 235 41 41 chrX 31685761 31685839 -145288301 + L2 LINE L2 2752 2829 -485 1968 127 0 33 chrX 31685839 31686001 -145288139 - AluSx SINE Alu -22 290 124 232 47 23 23 chrX 31686001 31686044 -145288096 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2074 119 0 3 chrX 31686044 31686329 -145287811 - AluSx SINE Alu -28 284 1 1968 127 0 33 chrX 31686329 31686465 -145287675 - AluSx SINE Alu -186 126 1 227 235 41 41 chrX 31686465 31686484 -145287656 + L2 LINE L2 2828 2849 -465 238 247 24 24 chrX 31686499 31686584 -145287556 - L1ME1 LINE L1 -1488 4658 4574 212 0 0 35 chrX 31686584 31686613 -145287527 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 * 831 72 0 0 chrX 31686612 31686723 -145287417 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 778 305 24 41 chrX 31687101 31687396 -145286744 + LTR16A1 LTR ERVL 168 457 0 315 284 28 66 chrX 31687504 31687642 -145286498 + L1MC4 LINE L1 5039 5168 -978 1941 151 35 0 chrX 31687642 31687980 -145286160 + L1MA9 LINE L1 5963 6312 0 315 284 28 66 chrX 31687980 31688052 -145286088 + L1MC4 LINE L1 5168 5241 -905 339 273 110 5 chrX 31688088 31688297 -145285843 + L1MC4 LINE L1 5264 5494 -2314 1372 254 82 10 chrX 31688309 31688710 -145285430 + L1MC4 LINE L1 5439 5868 -1940 1527 170 24 19 chrX 31688717 31689152 -145284988 + L1MC4 LINE L1 5527 5809 -345 1097 134 0 17 chrX 31689252 31689424 -145284716 - AluY SINE Alu -38 273 105 270 256 98 0 chrX 31689454 31689536 -145284604 + L1MC4 LINE L1 6614 6703 -1339 270 256 98 0 chrX 31689558 31689640 -145284500 + L1MC4 LINE L1 6614 6703 -1339 206 133 0 44 chrX 31689640 31689685 -145284455 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 258 296 23 0 chrX 31689688 31689776 -145284364 + L1MC4 LINE L1 6614 6703 -1339 838 199 12 18 chrX 31689788 31690129 -145284011 + (TATATG)n Simple_repeat Simple_repeat 1 339 0 229 289 0 0 chrX 31690130 31690182 -145283958 + (TATG)n Simple_repeat Simple_repeat 4 55 0 230 289 0 22 chrX 31690182 31690272 -145283868 + L1MC4 LINE L1 6614 6701 -1341 228 281 22 22 chrX 31690264 31690353 -145283787 - L1MC4 LINE L1 -1339 6703 6615 * 228 237 0 65 chrX 31690387 31690480 -145283660 - L1MC4 LINE L1 -1342 6700 6614 595 209 26 0 chrX 31690485 31690638 -145283502 + (TATATG)n Simple_repeat Simple_repeat 4 160 0 416 224 64 24 chrX 31690728 31690853 -145283287 - Charlie4 DNA MER1_type -1815 146 17 2260 77 0 3 chrX 31691030 31691315 -145282825 - AluSx SINE Alu -19 293 10 2254 99 3 20 chrX 31691476 31691779 -145282361 + AluSp SINE Alu 1 298 -15 2303 97 0 0 chrX 31691811 31692101 -145282039 + AluSx SINE Alu 1 290 -22 243 146 0 0 chrX 31692276 31692317 -145281823 + (TA)n Simple_repeat Simple_repeat 1 41 0 1238 135 0 0 chrX 31692317 31692495 -145281645 - AluSg/x SINE Alu -5 305 128 496 311 91 28 chrX 31692621 31692850 -145281290 - L1M4 LINE L1 -1832 4314 4048 1963 130 13 19 chrX 31692850 31693158 -145280982 + AluSx SINE Alu 1 306 -6 496 311 91 28 chrX 31693158 31693324 -145280816 - L1M4 LINE L1 -2098 4048 3894 868 148 0 0 chrX 31693346 31693468 -145280672 - FLAM_C SINE Alu -21 122 1 335 356 0 5 chrX 31693472 31693666 -145280474 - L1M4 LINE L1 -2265 3881 3689 398 249 76 93 chrX 31693905 31694130 -145280010 - L1M4 LINE L1 -2697 3449 3229 2051 115 0 33 chrX 31694737 31695042 -145279098 + AluSx SINE Alu 1 295 -17 213 284 62 25 chrX 31695100 31695181 -145278959 + L2 LINE L2 3160 3243 -29 261 284 0 0 chrX 31695191 31695258 -145278882 - MIR SINE MIR -2 260 194 946 148 9 83 chrX 31695305 31695451 -145278689 + L1MB2 LINE L1 5957 6081 -90 2309 96 0 0 chrX 31695451 31695742 -145278398 - AluSg SINE Alu -18 292 2 946 148 9 83 chrX 31695742 31695825 -145278315 + L1MB2 LINE L1 6081 6169 -2 1108 167 21 54 chrX 31695849 31695930 -145278210 + L1MB2 LINE L1 5423 5505 -663 2225 86 0 92 chrX 31695930 31696267 -145277873 + AluSq SINE Alu 1 306 -7 1108 167 21 54 chrX 31696267 31696425 -145277715 + L1MB2 LINE L1 5505 5654 -514 239 167 0 0 chrX 31696450 31696486 -145277654 - tRNA-Tyr-TAC tRNA tRNA -39 37 2 432 159 0 0 chrX 31696486 31696563 -145277577 + L1MB2 LINE L1 5655 5731 -437 314 98 0 0 chrX 31696564 31696605 -145277535 - MSTA LTR MaLR 0 428 388 1056 117 0 0 chrX 31696605 31696742 -145277398 + AluSq/x SINE Alu 1 137 -176 2062 133 3 22 chrX 31696743 31697059 -145277081 + AluSq SINE Alu 3 312 -1 1247 172 27 99 chrX 31697069 31697401 -145276739 + AluSq SINE Alu 1 308 -5 1669 119 45 48 chrX 31697403 31697454 -145276686 + L1MB2 LINE L1 5781 5831 -340 2282 123 0 0 chrX 31697454 31697764 -145276376 + AluSx SINE Alu 1 310 -2 1669 119 45 48 chrX 31697764 31697962 -145276178 + L1MB2 LINE L1 5831 6031 -140 2280 92 3 0 chrX 31697962 31698254 -145275886 - AluSq SINE Alu -20 293 1 1669 119 45 48 chrX 31698254 31698313 -145275827 + L1MB2 LINE L1 6031 6089 -82 722 104 0 0 chrX 31698342 31698438 -145275702 - AluS SINE Alu -212 100 5 1102 140 0 17 chrX 31698450 31698628 -145275512 - AluSg/x SINE Alu -2 308 134 947 194 162 35 chrX 31698628 31698943 -145275197 + MLT1D LTR MaLR 147 501 -4 739 189 15 0 chrX 31699206 31699338 -145274802 + AluJo SINE Alu 2 135 -177 730 132 0 0 chrX 31699545 31699651 -145274489 + FLAM_C SINE Alu 21 126 -17 1773 133 0 104 chrX 31699951 31700063 -145274077 + AluJo SINE Alu 1 123 -189 2183 122 6 6 chrX 31700063 31700375 -145273765 - AluSp SINE Alu -1 312 1 1773 133 0 104 chrX 31700375 31700395 -145273745 + AluJo SINE Alu 123 143 -169 2565 75 0 0 chrX 31700395 31700701 -145273439 - AluSg SINE Alu -4 306 1 2204 136 0 0 chrX 31700707 31701017 -145273123 - AluSx SINE Alu -2 310 1 1773 133 0 104 chrX 31701017 31701044 -145273096 + AluJo SINE Alu 148 176 -136 2368 75 17 0 chrX 31701044 31701336 -145272804 + AluSp SINE Alu 1 297 -16 1773 133 0 104 chrX 31701336 31701513 -145272627 + AluJo SINE Alu 176 310 -2 2327 90 0 0 chrX 31701587 31701876 -145272264 - AluSc SINE Alu -20 289 1 1400 116 5 0 chrX 31702331 31702520 -145271620 - AluJo SINE Alu -114 198 9 1981 121 62 0 chrX 31702660 31702950 -145271190 + AluSg SINE Alu 1 308 -2 2183 86 10 7 chrX 31703036 31703327 -145270813 + AluSp SINE Alu 1 292 -21 246 32 0 0 chrX 31703330 31703361 -145270779 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 192 77 0 0 chrX 31703825 31703851 -145270289 + (CAAAG)n Simple_repeat Simple_repeat 2 27 0 530 143 0 12 chrX 31703919 31704003 -145270137 - AluJ/FLAM SINE Alu -228 84 2 1692 141 0 85 chrX 31704039 31704167 -145269973 + AluJo SINE Alu 1 138 -174 2342 86 0 7 chrX 31704167 31704459 -145269681 - AluSx SINE Alu -22 290 1 1692 141 0 85 chrX 31704459 31704649 -145269491 + AluJo SINE Alu 138 292 -20 366 23 0 0 chrX 31704761 31704804 -145269336 + (TG)n Simple_repeat Simple_repeat 2 44 0 1506 143 0 5 chrX 31704837 31705061 -145269079 - AluJo SINE Alu -89 223 1 26 0 0 0 chrX 31705181 31705207 -145268933 + AT_rich Low_complexity Low_complexity 1 26 0 1232 161 83 0 chrX 31705609 31705814 -145268326 + AluJb SINE Alu 1 222 -90 21 0 0 0 chrX 31705838 31705859 -145268281 + AT_rich Low_complexity Low_complexity 1 21 0 476 179 43 79 chrX 31706120 31706227 -145267913 - L1MC/D LINE L1 -2000 5808 5706 1520 132 0 152 chrX 31706227 31706569 -145267571 + AluY SINE Alu 5 294 -17 476 179 43 79 chrX 31706569 31706601 -145267539 - L1MC/D LINE L1 -2102 5706 5674 616 115 0 185 chrX 31706632 31706789 -145267351 - FLAM_C SINE Alu -11 132 5 270 281 0 0 chrX 31706808 31706872 -145267268 - L1MC/D LINE L1 -2166 5642 5579 2125 122 0 3 chrX 31707494 31707789 -145266351 - AluSx SINE Alu -14 298 5 4920 86 6 6 chrX 31707794 31708447 -145265693 + LTR8 LTR ERV1 37 689 -2 1616 118 39 0 chrX 31708447 31708676 -145265464 - AluJo SINE Alu -74 238 1 2299 82 17 0 chrX 31708902 31709196 -145264944 + AluSx SINE Alu 1 299 -13 363 64 0 0 chrX 31709197 31709244 -145264896 - LTR8 LTR ERV1 -643 48 2 428 139 0 0 chrX 31709244 31709316 -145264824 + AluJ/FRAM SINE Alu 232 303 -9 287 252 33 70 chrX 31709411 31709647 -145264493 + LTR16C LTR ERVL 229 457 0 2480 80 0 0 chrX 31709853 31710153 -145263987 + AluSx SINE Alu 1 300 -12 1683 225 62 16 chrX 31710260 31710774 -145263366 + L1PB4 LINE L1 5273 5833 -329 1806 204 9 49 chrX 31710774 31711057 -145263083 - MLT1C LTR MaLR 0 467 174 2339 95 3 3 chrX 31711057 31711362 -145262778 - AluSg SINE Alu -5 305 1 1806 204 9 49 chrX 31711362 31711439 -145262701 - MLT1C LTR MaLR -293 174 124 2325 97 0 10 chrX 31711439 31711750 -145262390 - AluSx SINE Alu -4 308 1 1806 204 9 49 chrX 31711750 31711819 -145262321 - MLT1C LTR MaLR -343 124 54 630 210 105 139 chrX 31711855 31711927 -145262213 + L1MC4a LINE L1 5834 5907 -1901 2156 122 3 0 chrX 31711927 31712231 -145261909 + AluSx SINE Alu 4 308 -4 2253 88 0 3 chrX 31712236 31712546 -145261594 - AluSx SINE Alu 0 309 1 630 210 105 139 chrX 31712546 31712813 -145261327 + L1MC4a LINE L1 5911 6186 -1622 2157 100 4 4 chrX 31712813 31713115 -145261025 - AluSc SINE Alu 0 302 1 630 210 105 139 chrX 31713115 31713127 -145261013 + L1MC4a LINE L1 6186 6197 -1611 1691 188 7 17 chrX 31713127 31713420 -145260720 - AluJo SINE Alu -22 290 1 630 210 105 139 chrX 31713420 31713610 -145260530 + L1MC4a LINE L1 6197 6366 -1442 2278 95 3 0 chrX 31713611 31713905 -145260235 - AluSc SINE Alu -14 295 1 24 67 0 0 chrX 31713933 31713978 -145260162 + AT_rich Low_complexity Low_complexity 1 45 0 231 200 12 62 chrX 31713984 31714064 -145260076 + L1P LINE L1 3178 3253 -2893 2007 137 0 10 chrX 31714148 31714448 -145259692 - AluJb SINE Alu -12 300 4 2234 102 3 3 chrX 31714531 31714825 -145259315 - AluSc SINE Alu -15 294 1 183 204 0 0 chrX 31714835 31714879 -145259261 + T-rich Low_complexity Low_complexity 1 44 0 495 246 8 101 chrX 31714954 31715355 -145258785 + L1MC4 LINE L1 6876 7140 -821 2037 91 95 0 chrX 31715355 31715629 -145258511 + AluSx SINE Alu 1 300 -12 495 246 8 101 chrX 31715629 31715744 -145258396 + L1MC4 LINE L1 7140 7264 -697 1239 185 112 46 chrX 31715885 31716252 -145257888 + LTR37A LTR ERV1 18 408 -18 349 251 35 150 chrX 31716306 31716379 -145257761 + L1MC4 LINE L1 7346 7426 -616 2224 103 7 0 chrX 31716379 31716679 -145257461 + AluSp SINE Alu 1 302 -11 349 251 35 150 chrX 31716679 31716901 -145257239 + L1MC4 LINE L1 7426 7594 -448 1874 86 123 0 chrX 31716901 31717169 -145256971 + AluSq SINE Alu 1 301 -2 349 251 35 150 chrX 31717169 31717239 -145256901 + L1MC4 LINE L1 7594 7670 -372 1996 108 54 4 chrX 31717284 31717562 -145256578 - AluY SINE Alu -19 292 1 1821 179 55 6 chrX 31717701 31718047 -145256093 + MLT1A1 LTR MaLR 1 363 -2 1179 123 0 0 chrX 31718058 31718213 -145255927 - AluSg/x SINE Alu -20 292 138 226 333 0 0 chrX 31718288 31718375 -145255765 + L1MC5 LINE L1 7808 7894 -67 832 143 0 126 chrX 31718383 31718565 -145255575 - FAM SINE Alu -2 47 1 2218 105 3 16 chrX 31718766 31719081 -145255059 + AluSx SINE Alu 1 311 -1 180 265 0 41 chrX 31719442 31719491 -145254649 - MIR SINE MIR -129 79 33 420 269 41 47 chrX 31719505 31719676 -145254464 + MER20B DNA MER1_type 1 170 -613 2263 102 0 3 chrX 31719882 31720177 -145253963 + AluSx SINE Alu 3 296 -16 1682 163 76 7 chrX 31720622 31720910 -145253230 - AluJb SINE Alu -4 308 1 252 195 37 122 chrX 31721072 31721154 -145252986 - L2 LINE L2 0 3272 3198 1660 91 0 0 chrX 31721156 31721376 -145252764 - AluSq SINE Alu 0 313 94 1073 58 0 36 chrX 31721389 31721527 -145252613 + AluSx SINE Alu 1 133 -180 1200 158 0 0 chrX 31724273 31724493 -145249647 + AluSx SINE Alu 121 340 0 180 225 42 42 chrX 31724498 31724569 -145249571 + MIR SINE MIR 2 72 -190 1484 233 77 22 chrX 31724862 31724927 -145249213 - L1ME2 LINE L1 0 6164 6104 2061 137 0 0 chrX 31724927 31725220 -145248920 + AluSx SINE Alu 3 295 -17 1484 233 77 22 chrX 31725220 31725609 -145248531 - L1ME2 LINE L1 -60 6104 5685 2339 105 0 9 chrX 31726607 31726922 -145247218 + AluSx SINE Alu 1 312 0 749 233 90 5 chrX 31727054 31727131 -145247009 - MIR SINE MIR -19 243 174 1483 250 104 51 chrX 31727131 31727756 -145246384 - MLT2F LTR ERVL -1 662 5 749 233 90 5 chrX 31727756 31727901 -145246239 - MIR SINE MIR -88 174 2 2175 120 7 3 chrX 31727934 31728413 -145245727 + AluSx SINE Alu 1 480 0 659 326 13 8 chrX 31728415 31728654 -145245486 + L3 LINE CR1 1336 1575 -2 2371 94 0 0 chrX 31729451 31729748 -145244392 + AluSc SINE Alu 1 297 -12 989 268 105 24 chrX 31729764 31729978 -145244162 + LTR33 LTR ERVL 29 224 -297 270 0 0 0 chrX 31729978 31730008 -145244132 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2291 86 7 0 chrX 31730010 31730290 -145243850 - AluSx SINE Alu -30 282 1 989 268 105 24 chrX 31730290 31730528 -145243612 + LTR33 LTR ERVL 224 521 0 1037 205 12 37 chrX 31730714 31730808 -145243332 + MIR SINE MIR 14 109 -153 1270 145 4 40 chrX 31730808 31731035 -145243105 + MER20 DNA MER1_type 1 219 0 1037 205 12 37 chrX 31731035 31731184 -145242956 + MIR SINE MIR 109 251 -11 192 315 82 14 chrX 31731297 31731370 -145242770 + L2 LINE L2 3200 3277 -36 22 0 0 0 chrX 31731686 31731708 -145242432 + AT_rich Low_complexity Low_complexity 1 22 0 457 238 74 45 chrX 31732424 31732489 -145241651 - MIR SINE MIR -11 251 189 2069 124 10 0 chrX 31732489 31732779 -145241361 + AluSx SINE Alu 1 293 -19 192 77 0 0 chrX 31732779 31732805 -145241335 + (TATATG)n Simple_repeat Simple_repeat 4 29 0 457 238 74 45 chrX 31732805 31732940 -145241200 - MIR SINE MIR -72 190 44 2065 107 40 0 chrX 31733104 31733399 -145240741 - AluSg SINE Alu 0 306 1 207 100 0 0 chrX 31733645 31733675 -145240465 + (GAAA)n Simple_repeat Simple_repeat 4 33 0 758 192 133 10 chrX 31733746 31733949 -145240191 - MIR SINE MIR -33 229 2 1080 212 144 99 chrX 31734154 31734555 -145239585 - MLT1G1 LTR MaLR -12 583 201 5163 74 4 40 chrX 31734555 31734682 -145239458 - LTR8 LTR ERV1 0 691 561 2483 94 0 0 chrX 31734682 31734991 -145239149 - AluSg SINE Alu -1 309 1 5163 74 4 40 chrX 31734991 31735414 -145238726 - LTR8 LTR ERV1 -130 561 170 1966 112 13 49 chrX 31735414 31735740 -145238400 - AluSg1 SINE Alu 0 309 1 5163 74 4 40 chrX 31735740 31735905 -145238235 - LTR8 LTR ERV1 -521 170 1 1080 212 144 99 chrX 31735905 31736060 -145238080 - MLT1G1 LTR MaLR -394 201 2 938 228 16 0 chrX 31736398 31736587 -145237553 + MER58A DNA MER1_type 27 218 -6 1930 151 0 3 chrX 31738021 31738313 -145235827 + AluJo SINE Alu 1 291 -21 1925 142 19 19 chrX 31738321 31738630 -145235510 + AluJo SINE Alu 1 309 -3 518 201 128 13 chrX 31738637 31738786 -145235354 + L1MC4a LINE L1 5600 5765 -2043 482 116 7 0 chrX 31738788 31738861 -145235279 - MER51B LTR ERV1 0 633 314 299 167 0 0 chrX 31738864 31738912 -145235228 - MER58 DNA MER1_type -2189 231 184 2271 107 3 0 chrX 31738958 31739258 -145234882 + AluSx SINE Alu 1 301 -11 435 223 90 18 chrX 31739259 31739425 -145234715 + L1MC4a LINE L1 5818 5995 -1813 1334 247 79 28 chrX 31739445 31739902 -145234238 - LTR33A LTR ERVL -43 480 1 2400 94 0 0 chrX 31740241 31740539 -145233601 + AluSg SINE Alu 1 298 -12 1049 161 6 0 chrX 31740726 31740887 -145233253 - AluJb SINE Alu -22 290 129 2436 78 0 0 chrX 31740908 31741201 -145232939 + AluY SINE Alu 1 293 -18 2129 122 3 0 chrX 31741212 31741507 -145232633 + AluSq SINE Alu 5 300 -13 2646 136 15 31 chrX 31741507 31741554 -145232586 - L1MB2 LINE L1 -5 6166 6120 2281 103 0 3 chrX 31741554 31741854 -145232286 - AluSx SINE Alu -13 299 1 2646 136 15 31 chrX 31741854 31742153 -145231987 - L1MB2 LINE L1 -51 6120 5826 1647 168 12 59 chrX 31742153 31742326 -145231814 - AluJo SINE Alu -5 307 154 2323 104 7 0 chrX 31742326 31742635 -145231505 - AluSx SINE Alu -1 311 1 1647 168 12 59 chrX 31742635 31742783 -145231357 - AluJo SINE Alu -158 154 1 2646 136 15 31 chrX 31742783 31742890 -145231250 - L1MB2 LINE L1 -345 5826 5719 2249 98 19 3 chrX 31742906 31743213 -145230927 + AluSp SINE Alu 1 312 -1 253 303 76 17 chrX 31743452 31743571 -145230569 + MLT1L LTR MaLR 424 549 -66 183 139 0 0 chrX 31743707 31743743 -145230397 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 823 152 0 0 chrX 31743967 31744092 -145230048 - FLAM_C SINE Alu -8 125 1 1466 272 57 83 chrX 31744191 31744580 -145229560 + L1MEd LINE L1 285 683 -5627 2282 101 3 0 chrX 31744580 31744878 -145229262 + AluSx SINE Alu 1 299 -13 1466 272 57 83 chrX 31744878 31745498 -145228642 + L1MEd LINE L1 683 1318 -4992 2122 113 0 0 chrX 31745498 31745803 -145228337 + AluSx SINE Alu 1 305 0 2251 99 0 3 chrX 31745807 31746135 -145228005 + AluSx SINE Alu 1 327 0 1466 272 57 83 chrX 31746135 31746436 -145227704 + L1MEd LINE L1 1321 1614 -4696 2473 192 60 31 chrX 31746453 31747068 -145227072 + L1MEd LINE L1 2353 2985 -3144 966 160 22 22 chrX 31747068 31747249 -145226891 - MLT1A1 LTR MaLR -175 190 10 2623 43 0 10 chrX 31747304 31747605 -145226535 - AluY SINE Alu -13 298 1 238 218 143 38 chrX 31748008 31748141 -145225999 - L1M4 LINE L1 -366 5812 5666 228 252 29 87 chrX 31748248 31748351 -145225789 - L1M4 LINE L1 -2465 5530 5434 2456 84 0 0 chrX 31748358 31748655 -145225485 - AluSx SINE Alu -15 297 1 25 0 0 0 chrX 31748659 31748684 -145225456 + AT_rich Low_complexity Low_complexity 1 25 0 2386 92 10 0 chrX 31748687 31748992 -145225148 + AluSc SINE Alu 1 308 -1 370 82 0 0 chrX 31749001 31749050 -145225090 + AluSc SINE Alu 247 295 -4 429 260 38 30 chrX 31749069 31749284 -145224856 - L1M4 LINE L1 -748 5398 5198 679 157 45 165 chrX 31749326 31749593 -145224547 - L1MC5 LINE L1 -36 7925 7691 22 35 0 0 chrX 31749761 31749790 -145224350 + AT_rich Low_complexity Low_complexity 1 29 0 910 278 82 54 chrX 31749839 31750157 -145223983 - L1M4 LINE L1 -1361 4785 4477 2300 113 0 0 chrX 31750157 31750468 -145223672 + AluSx SINE Alu 1 311 -1 910 278 82 54 chrX 31750468 31750726 -145223414 - L1M4 LINE L1 -1669 4477 4185 2263 84 0 69 chrX 31750726 31751061 -145223079 - AluSx SINE Alu 0 312 1 910 278 82 54 chrX 31751061 31751169 -145222971 - L1M4 LINE L1 -1961 4185 4081 1251 196 87 7 chrX 31751204 31751480 -145222660 - MLT2F LTR ERVL 0 663 366 1335 148 51 0 chrX 31751522 31751739 -145222401 + ERVL LTR ERVL 5247 5474 -290 207 162 0 0 chrX 31752018 31752055 -145222085 + (CATA)n Simple_repeat Simple_repeat 4 40 0 2351 92 3 0 chrX 31752057 31752350 -145221790 - AluSp SINE Alu -19 294 1 298 127 0 18 chrX 31752416 31752471 -145221669 - MLT2F LTR ERVL -2 661 608 1042 241 20 45 chrX 31752514 31752725 -145221415 - MLT2F LTR ERVL -57 606 400 2757 84 17 6 chrX 31752725 31753083 -145221057 - THE1B LTR MaLR -2 362 1 1042 241 20 45 chrX 31753083 31753116 -145221024 - MLT2F LTR ERVL -263 400 368 696 238 10 7 chrX 31753124 31753328 -145220812 - MLT2F LTR ERVL -413 250 1 2300 94 3 0 chrX 31753343 31753642 -145220498 - AluSq SINE Alu -7 306 7 1781 214 80 40 chrX 31753672 31754196 -145219944 - L1ME1 LINE L1 -5 6161 5617 * 2843 226 68 25 chrX 31754193 31754585 -145219555 - L1ME1 LINE L1 -802 5344 4971 2056 133 3 0 chrX 31754585 31754870 -145219270 + AluSx SINE Alu 1 286 -26 2843 226 68 25 chrX 31754870 31754889 -145219251 - L1ME1 LINE L1 -1175 4971 4954 189 0 0 0 chrX 31754889 31754910 -145219230 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 2843 226 68 25 chrX 31754910 31755461 -145218679 - L1ME1 LINE L1 -1192 4954 4339 751 183 12 91 chrX 31755457 31755506 -145218634 - L1ME1 LINE L1 -2992 3154 3103 * 2286 91 0 7 chrX 31755506 31755817 -145218323 - AluSx SINE Alu 0 309 1 751 183 12 91 chrX 31755817 31756007 -145218133 - L1ME1 LINE L1 -3043 3103 2933 597 206 168 0 chrX 31756033 31756188 -145217952 + MLT1B LTR MaLR 210 390 0 204 40 0 0 chrX 31757528 31757553 -145216587 + (TG)n Simple_repeat Simple_repeat 1 25 0 1638 122 157 22 chrX 31758547 31758859 -145215281 + L1MB8 LINE L1 5507 5860 -324 855 164 55 33 chrX 31758864 31759047 -145215093 + L1MB8 LINE L1 5991 6177 -1 2412 82 0 3 chrX 31759055 31759358 -145214782 + AluSg SINE Alu 1 302 -8 2027 144 0 3 chrX 31759557 31759856 -145214284 - AluJb SINE Alu -14 298 1 786 328 52 28 chrX 31760048 31760509 -145213631 - MARNA DNA Mariner -8 578 107 331 340 31 5 chrX 31760509 31760693 -145213447 - MIR SINE MIR -36 226 37 1855 93 12 8 chrX 31760699 31760957 -145213183 + L1PA10 LINE L1 5889 6147 -21 2313 107 7 0 chrX 31760959 31761304 -145212836 - AluSx SINE Alu 0 347 1 34 0 0 0 chrX 31761311 31761345 -145212795 + AT_rich Low_complexity Low_complexity 1 34 0 1706 128 68 0 chrX 31761472 31761721 -145212419 - AluSg SINE Alu -39 271 6 562 257 103 49 chrX 31762347 31762376 -145211764 - MIR SINE MIR 0 262 236 2218 104 27 64 chrX 31762376 31762588 -145211552 - THE1B LTR MaLR 0 364 171 2448 99 0 0 chrX 31762588 31762892 -145211248 + AluSx SINE Alu 1 304 -8 2218 104 27 64 chrX 31762892 31763055 -145211085 - THE1B LTR MaLR -193 171 3 562 257 103 49 chrX 31763055 31763271 -145210869 - MIR SINE MIR -26 236 4 856 231 245 44 chrX 31763526 31763938 -145210202 + MLT1H LTR MaLR 40 534 -15 2045 115 0 27 chrX 31764120 31764416 -145209724 - AluSx SINE Alu -1 311 24 1959 89 46 32 chrX 31764563 31764704 -145209436 + AluSx SINE Alu 1 138 -170 2164 105 3 7 chrX 31764704 31764999 -145209141 + AluSc SINE Alu 1 294 -15 1959 89 46 32 chrX 31764999 31765161 -145208979 + AluSx SINE Alu 138 308 0 25 0 0 0 chrX 31765408 31765433 -145208707 + AT_rich Low_complexity Low_complexity 1 25 0 534 197 40 13 chrX 31765433 31765585 -145208555 - L1MC4 LINE L1 -3 8039 7884 1891 137 0 65 chrX 31765604 31765805 -145208335 - AluJb SINE Alu -9 303 129 2238 94 7 32 chrX 31765805 31766114 -145208026 - AluSq SINE Alu -12 301 1 1891 137 0 65 chrX 31766114 31766234 -145207906 - AluJb SINE Alu -183 129 3 1173 221 18 21 chrX 31766284 31766565 -145207575 - L1MC4 LINE L1 -140 7902 7623 1998 138 10 10 chrX 31766566 31766862 -145207278 - AluJo SINE Alu -13 299 4 351 51 57 0 chrX 31766866 31766919 -145207221 - FLAM SINE Alu -2 131 82 1131 119 18 18 chrX 31766921 31767089 -145207051 - AluJo SINE Alu -98 214 47 1064 160 22 0 chrX 31767091 31767272 -145206868 - L1MC4 LINE L1 -409 7633 7449 191 311 253 11 chrX 31767514 31767704 -145206436 + L3 LINE CR1 1334 1569 -8 1913 240 17 21 chrX 31767808 31768291 -145205849 + L1MC4a LINE L1 5377 5857 -1951 2326 99 3 3 chrX 31768294 31768597 -145205543 + AluSx SINE Alu 1 303 -9 2135 117 0 0 chrX 31768618 31768947 -145205193 + AluSq SINE Alu 1 329 0 2353 103 0 0 chrX 31769164 31769464 -145204676 - AluSx SINE Alu -12 300 1 865 170 0 0 chrX 31769532 31769667 -145204473 + FLAM_C SINE Alu 1 135 -8 2212 108 17 0 chrX 31769809 31770106 -145204034 + AluSx SINE Alu 1 302 -10 931 256 65 40 chrX 31770288 31770676 -145203464 + LTR16A1 LTR ERVL 82 457 0 1899 157 0 48 chrX 31771417 31771564 -145202576 + AluJo SINE Alu 1 127 -185 2176 124 7 0 chrX 31771564 31771870 -145202270 + AluSx SINE Alu 1 308 -4 1899 157 0 48 chrX 31771870 31772035 -145202105 + AluJo SINE Alu 127 298 -14 1416 187 11 89 chrX 31772043 31772092 -145202048 + MER58B DNA MER1_type 2 53 -2367 2413 100 0 0 chrX 31772092 31772401 -145201739 - AluSx SINE Alu -3 309 1 1416 187 11 89 chrX 31772401 31772449 -145201691 + MER58B DNA MER1_type 53 103 -2317 2274 95 0 0 chrX 31772449 31772771 -145201369 - AluSq SINE Alu 0 322 1 1416 187 11 89 chrX 31772771 31772979 -145201161 + MER58B DNA MER1_type 103 278 -2142 2741 173 112 18 chrX 31772979 31773551 -145200589 + MLT1E2 LTR MaLR 1 626 0 1416 187 11 89 chrX 31773551 31773611 -145200529 + MER58B DNA MER1_type 278 341 0 659 210 153 0 chrX 31773627 31773784 -145200356 + MER5A DNA MER1_type 9 189 0 1995 98 0 0 chrX 31773815 31774070 -145200070 - AluSx SINE Alu -57 255 1 645 225 50 12 chrX 31774125 31774285 -145199855 - MER110 LTR ERV1 -105 386 221 297 261 92 21 chrX 31774667 31774809 -145199331 + L2 LINE L2 3149 3300 -13 2119 133 0 3 chrX 31775461 31775763 -145198377 - AluSq SINE Alu -12 301 1 1244 192 76 112 chrX 31776316 31776539 -145197601 + LTR37B LTR ERV1 9 238 -230 2232 59 7 56 chrX 31776539 31776844 -145197296 + AluSx SINE Alu 1 290 -22 2299 81 0 20 chrX 31776853 31777151 -145196989 + AluSc SINE Alu 1 292 -17 1244 192 76 112 chrX 31777151 31777390 -145196750 + LTR37B LTR ERV1 246 464 -4 2223 89 4 0 chrX 31777809 31778117 -145196023 + AluSx SINE Alu 1 309 0 2404 88 0 3 chrX 31778127 31778424 -145195716 + AluSx SINE Alu 1 296 -16 379 83 0 0 chrX 31778832 31778880 -145195260 - MSTD LTR MaLR -1 395 348 2306 82 20 16 chrX 31778885 31779189 -145194951 - AluSc SINE Alu -4 305 1 304 185 46 56 chrX 31779555 31779663 -145194477 - L1ME4a LINE L1 -56 6065 5959 1663 186 58 65 chrX 31779673 31779956 -145194184 - MLT1C LTR MaLR -8 459 179 2254 102 0 0 chrX 31779956 31780241 -145193899 - AluSx SINE Alu -27 285 1 1663 186 58 65 chrX 31780241 31780419 -145193721 - MLT1C LTR MaLR -288 179 1 2172 103 14 3 chrX 31780465 31780755 -145193385 - AluSx SINE Alu -19 293 1 454 303 83 0 chrX 31780782 31780914 -145193226 + LTR33 LTR ERVL 55 197 -324 585 315 17 0 chrX 31780927 31781108 -145193032 + LTR33 LTR ERVL 330 513 -8 1972 178 48 30 chrX 31781149 31781168 -145192972 + LTR37B LTR ERV1 1 18 -450 2455 65 0 3 chrX 31781168 31781462 -145192678 + AluY SINE Alu 1 293 -18 306 0 0 0 chrX 31781462 31781496 -145192644 + (TA)n Simple_repeat Simple_repeat 2 35 0 1972 178 48 30 chrX 31781496 31781935 -145192205 + LTR37B LTR ERV1 17 468 0 326 191 0 0 chrX 31781992 31782055 -145192085 - L1ME4a LINE L1 -2038 5770 5708 1164 142 0 0 chrX 31782294 31782470 -145191670 - AluSg/x SINE Alu 0 312 137 243 296 47 21 chrX 31782548 31782713 -145191427 - MIR SINE MIR -26 236 13 510 188 10 21 chrX 31782921 31783017 -145191123 - MER58C DNA MER1_type 0 215 121 2051 101 3 35 chrX 31783042 31783328 -145190812 + AluSx SINE Alu 12 288 -24 23 0 0 0 chrX 31783328 31783351 -145190789 + AT_rich Low_complexity Low_complexity 1 23 0 2283 95 3 13 chrX 31783354 31783659 -145190481 + AluSg SINE Alu 1 302 -8 1403 150 0 0 chrX 31783668 31783888 -145190252 + AluSg/x SINE Alu 83 302 -8 241 206 0 151 chrX 31783897 31783921 -145190219 - MER58C DNA MER1_type -152 63 37 2387 83 7 0 chrX 31783921 31784221 -145189919 + AluSg SINE Alu 1 302 -8 241 206 0 151 chrX 31784221 31784269 -145189871 - MER58C DNA MER1_type -178 37 2 335 276 10 0 chrX 31784269 31784367 -145189773 - L1MEd LINE L1 -5108 1011 913 1259 199 7 43 chrX 31784367 31784643 -145189497 - AluJb SINE Alu -3 309 44 2776 26 0 0 chrX 31785086 31785393 -145188747 + AluY SINE Alu 1 307 -4 2148 132 3 0 chrX 31786283 31786587 -145187553 - AluSx SINE Alu -7 305 1 2512 74 3 0 chrX 31787090 31787389 -145186751 - AluSp SINE Alu -13 300 1 1454 209 16 12 chrX 31787690 31788011 -145186129 - L1ME1 LINE L1 0 6166 5845 2331 100 7 0 chrX 31788022 31788332 -145185808 - AluSx SINE Alu 0 312 1 1094 89 0 0 chrX 31788332 31788467 -145185673 - AluSq/x SINE Alu -176 137 3 2414 209 12 43 chrX 31788469 31788851 -145185289 - L1ME1 LINE L1 -315 5851 5493 2313 103 0 0 chrX 31788851 31789143 -145184997 - AluSg SINE Alu -18 292 1 2414 209 12 43 chrX 31789143 31789359 -145184781 - L1ME1 LINE L1 -673 5493 5272 2447 153 19 36 chrX 31789364 31789697 -145184443 - L1MB7 LINE L1 -19 6165 5828 2449 76 0 22 chrX 31789697 31790012 -145184128 - AluSg SINE Alu -1 309 2 2447 153 19 36 chrX 31790012 31790050 -145184090 - L1MB7 LINE L1 -356 5828 5791 2281 83 3 7 chrX 31790050 31790339 -145183801 + AluSp SINE Alu 1 288 -25 259 44 44 0 chrX 31790340 31790385 -145183755 + (TA)n Simple_repeat Simple_repeat 1 47 0 2447 153 19 36 chrX 31790385 31790482 -145183658 - L1MB7 LINE L1 -392 5792 5702 669 86 0 0 chrX 31790482 31790574 -145183566 + L1PA8 LINE L1 6080 6172 0 2554 158 31 43 chrX 31790575 31791012 -145183128 - L1MB7 LINE L1 -473 5711 5278 1890 149 3 20 chrX 31791012 31791314 -145182826 + AluJo SINE Alu 6 302 -10 2554 158 31 43 chrX 31791314 31791616 -145182524 - L1MB7 LINE L1 -906 5278 4974 229 220 20 0 chrX 31791596 31791646 -145182494 - L1MB7 LINE L1 -2294 3852 3802 * 919 214 16 21 chrX 31791675 31791862 -145182278 - L1MC4 LINE L1 -1139 6903 6718 323 227 0 30 chrX 31791868 31791934 -145182206 + MER58 DNA MER1_type 1 181 -160 2370 92 3 0 chrX 31791934 31792237 -145181903 - AluSc SINE Alu -5 304 1 420 254 71 53 chrX 31792237 31792575 -145181565 - L1MC4a LINE L1 -1318 6490 6147 329 273 45 32 chrX 31792669 31792809 -145181331 + L1M4 LINE L1 3613 3757 -2389 1957 104 0 102 chrX 31792809 31793144 -145180996 + AluSq SINE Alu 1 301 -2 329 273 45 32 chrX 31793144 31793157 -145180983 + L1M4 LINE L1 3757 3768 -2378 208 163 0 61 chrX 31793178 31793227 -145180913 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 781 268 65 4 chrX 31793234 31793480 -145180660 + MIR SINE MIR 2 262 0 358 137 0 0 chrX 31793608 31793659 -145180481 - 5S rRNA rRNA -70 51 1 1589 220 84 81 chrX 31793720 31794341 -145179799 - MER77 LTR ERV1 -8 597 67 851 266 34 48 chrX 31794422 31794913 -145179227 + MLT1H LTR MaLR 2 565 -2 236 307 92 73 chrX 31794988 31795173 -145178967 - L1ME LINE L1 -378 5743 5552 2149 80 90 7 chrX 31795173 31795461 -145178679 - AluSx SINE Alu 0 312 1 236 307 92 73 chrX 31795461 31795493 -145178647 - L1ME LINE L1 -569 5552 5522 820 210 31 97 chrX 31795692 31795834 -145178306 + MIR SINE MIR 2 121 -141 2257 106 7 0 chrX 31795834 31796136 -145178004 + AluSq SINE Alu 1 304 -9 820 210 31 97 chrX 31796136 31796250 -145177890 + MIR SINE MIR 121 241 -21 2607 72 0 0 chrX 31796389 31796696 -145177444 + AluSx SINE Alu 1 307 -5 2440 88 3 0 chrX 31797450 31797756 -145176384 + AluSp SINE Alu 1 307 -6 432 0 0 0 chrX 31797878 31797926 -145176214 + (TG)n Simple_repeat Simple_repeat 1 48 0 234 0 0 0 chrX 31797925 31797951 -145176189 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2051 108 4 7 chrX 31797952 31798231 -145175909 - AluSq SINE Alu -35 278 1 1320 223 83 85 chrX 31799272 31799331 -145174809 - MLT1G LTR MaLR 0 590 532 2312 111 0 0 chrX 31799331 31799629 -145174511 + AluSx SINE Alu 2 299 -13 1320 223 83 85 chrX 31799629 31800160 -145173980 - MLT1G LTR MaLR -58 532 1 1827 112 98 7 chrX 31800196 31800481 -145173659 - AluSx SINE Alu -1 311 1 1617 90 5 5 chrX 31802648 31802860 -145171280 - AluSq SINE Alu -101 212 1 273 228 0 76 chrX 31803349 31803428 -145170712 + L2 LINE L2 3184 3256 -16 210 118 0 0 chrX 31803430 31803464 -145170676 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1746 110 0 0 chrX 31803699 31803955 -145170185 + AluSx SINE Alu 58 313 0 2300 79 10 13 chrX 31804129 31804298 -145169842 - AluSc SINE Alu -6 303 134 2423 89 0 3 chrX 31804298 31804602 -145169538 - AluSx SINE Alu -9 303 1 2300 79 10 13 chrX 31804602 31804736 -145169404 - AluSc SINE Alu -175 134 1 598 218 16 0 chrX 31804737 31804861 -145169279 - MER105 DNA DNA -16 188 63 1945 173 76 47 chrX 31804867 31805055 -145169085 - LTR54B LTR ERV1 -11 487 306 2267 68 41 3 chrX 31805055 31805347 -145168793 - AluY SINE Alu -7 304 2 1945 173 76 47 chrX 31805347 31805631 -145168509 - LTR54B LTR ERV1 -192 306 1 2790 164 37 41 chrX 31805645 31806013 -145168127 - MLT2B2 LTR ERVL 0 515 148 2188 133 0 0 chrX 31806013 31806315 -145167825 - AluSx SINE Alu -10 302 1 2790 164 37 41 chrX 31806315 31806463 -145167677 - MLT2B2 LTR ERVL -367 148 1 253 329 13 34 chrX 31806648 31806680 -145167460 - L1ME LINE L1 -251 5870 5839 2353 84 0 3 chrX 31806680 31806976 -145167164 - AluSq SINE Alu -18 295 1 253 329 13 34 chrX 31806976 31807092 -145167048 - L1ME LINE L1 -282 5839 5725 1272 187 17 0 chrX 31807390 31807620 -145166520 - L1MC1 LINE L1 0 6333 6100 667 102 0 0 chrX 31807638 31807726 -145166414 + AluSq/x SINE Alu 23 110 -202 4793 116 0 21 chrX 31807756 31808474 -145165666 - L1MC1 LINE L1 -263 6070 5368 2361 99 0 3 chrX 31808480 31808783 -145165357 - AluSx SINE Alu -10 302 1 2198 101 7 13 chrX 31809665 31809963 -145164177 + AluSx SINE Alu 1 296 -16 2443 97 0 0 chrX 31810620 31810929 -145163211 - AluSx SINE Alu -3 309 1 311 349 79 7 chrX 31810979 31811131 -145163009 + MIR3 SINE MIR 4 166 -42 680 284 57 5 chrX 31811645 31811856 -145162284 - MIR SINE MIR -12 250 29 320 152 90 59 chrX 31811880 31811941 -145162199 - L1MD3 LINE L1 -1 8041 7983 2177 119 7 0 chrX 31811941 31812234 -145161906 + AluSx SINE Alu 1 295 -17 320 152 90 59 chrX 31812234 31812320 -145161820 - L1MD3 LINE L1 -59 7983 7880 243 200 18 18 chrX 31812329 31812384 -145161756 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2575 200 32 14 chrX 31812384 31812943 -145161197 - L1MC4 LINE L1 -131 7911 7343 2097 96 50 0 chrX 31814992 31815273 -145158867 + AluSg SINE Alu 1 295 -15 1829 103 48 48 chrX 31815633 31815928 -145158212 + AluSx SINE Alu 16 310 0 2343 94 0 0 chrX 31815928 31816227 -145157913 + AluSg SINE Alu 2 300 -10 2712 288 55 20 chrX 31816476 31817290 -145156850 + L1M4b LINE L1 1 843 -6016 820 76 51 0 chrX 31817308 31817426 -145156714 - MSTA LTR MaLR -304 124 1 551 270 44 26 chrX 31817436 31817689 -145156451 - L1MEc LINE L1 -4416 2031 1753 990 120 126 23 chrX 31817692 31817867 -145156273 + MSTA LTR MaLR 232 424 -4 2214 191 212 41 chrX 31817872 31818267 -145155873 + L1MB8 LINE L1 3650 3976 -2170 2418 92 0 3 chrX 31818267 31818573 -145155567 - AluSx SINE Alu -5 307 3 2214 191 212 41 chrX 31818573 31818926 -145155214 + L1MB8 LINE L1 3976 4526 -1620 4318 165 37 49 chrX 31818928 31820193 -145153947 + L1MB8 LINE L1 4898 6177 -1 2362 104 0 0 chrX 31820205 31820504 -145153636 + AluSx SINE Alu 1 299 -13 737 217 18 6 chrX 31820611 31820895 -145153245 - MLT1A1 LTR MaLR 0 365 1 1600 200 3 29 chrX 31821013 31821323 -145152817 - AluJo SINE Alu -10 302 1 253 169 12 24 chrX 31822743 31822826 -145151314 - L1ME4a LINE L1 -3 6118 6037 2480 90 3 0 chrX 31823085 31823397 -145150743 + AluSq SINE Alu 1 313 0 522 258 13 26 chrX 31823398 31823549 -145150591 + MER5A DNA MER1_type 40 188 -1 3310 172 22 13 chrX 31823617 31824250 -145149890 + L1MB3 LINE L1 5508 6146 -37 2305 108 0 0 chrX 31824251 31824547 -145149593 - AluSx SINE Alu -16 296 1 181 0 0 0 chrX 31824570 31824590 -145149550 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2046 89 18 18 chrX 31824590 31824872 -145149268 - AluSx SINE Alu -1 301 1 288 0 0 0 chrX 31824916 31824948 -145149192 + (CA)n Simple_repeat Simple_repeat 2 33 0 2117 70 13 57 chrX 31825144 31825208 -145148932 + L1PA11 LINE L1 5873 5938 -236 2226 92 3 22 chrX 31825208 31825525 -145148615 + AluSx SINE Alu 1 311 -1 2444 45 0 11 chrX 31825529 31825868 -145148272 + AluY SINE Alu 1 336 0 2117 70 13 57 chrX 31825868 31826112 -145148028 + L1PA11 LINE L1 5941 6173 -1 2236 83 27 7 chrX 31826907 31827208 -145146932 - AluY SINE Alu 0 311 5 4033 130 8 0 chrX 31827213 31827923 -145146217 - L1P LINE L1 -742 5426 4711 1005 168 0 0 chrX 31827923 31828072 -145146068 + AluJb SINE Alu 136 284 -28 2302 95 9 25 chrX 31828123 31828440 -145145700 + AluSq SINE Alu 1 312 -1 523 235 30 12 chrX 31828584 31828750 -145145390 - L1ME4a LINE L1 -2 6119 5951 24 32 0 0 chrX 31829106 31829137 -145145003 + AT_rich Low_complexity Low_complexity 1 31 0 258 33 0 0 chrX 31829294 31829324 -145144816 - LTR6A LTR ERV1 -462 102 73 399 21 0 0 chrX 31830231 31830279 -145143861 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 350 170 0 0 chrX 31830296 31830349 -145143791 + Alu SINE Alu 1 53 -249 885 146 51 0 chrX 31830373 31830510 -145143630 - AluSq/x SINE Alu -169 144 1 24 0 0 0 chrX 31830564 31830588 -145143552 + AT_rich Low_complexity Low_complexity 1 24 0 194 59 39 39 chrX 31830971 31831022 -145143118 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 3013 184 45 33 chrX 31831031 31831633 -145142507 + MLT1E2 LTR MaLR 1 609 -17 2296 100 0 3 chrX 31831747 31832047 -145142093 + AluSg SINE Alu 7 305 -5 2313 104 0 0 chrX 31832271 31832569 -145141571 - AluSx SINE Alu -14 298 1 1252 105 0 6 chrX 31832604 31832775 -145141365 + AluSg/x SINE Alu 135 304 -6 363 136 0 0 chrX 31832775 31832834 -145141306 + (TA)n Simple_repeat Simple_repeat 2 60 0 628 183 78 73 chrX 31833899 31833967 -145140173 + L1MC4 LINE L1 7290 7356 -686 2730 33 0 0 chrX 31833967 31834268 -145139872 - AluY SINE Alu -9 302 2 628 183 78 73 chrX 31834268 31834390 -145139750 + L1MC4 LINE L1 7356 7481 -561 585 231 82 0 chrX 31834395 31834529 -145139611 + FRAM SINE Alu 16 160 -16 1419 204 22 108 chrX 31834532 31834736 -145139404 + L1MC4 LINE L1 7510 7730 -312 2378 99 3 0 chrX 31834736 31835039 -145139101 + AluSp SINE Alu 1 304 -9 1419 204 22 108 chrX 31835039 31835417 -145138723 + L1MC4 LINE L1 7730 8042 0 255 220 64 155 chrX 31836688 31836952 -145137188 - L1MC4 LINE L1 -3 8039 7800 726 231 48 102 chrX 31836996 31837070 -145137070 - L1MC4 LINE L1 -140 7902 7826 2327 88 3 3 chrX 31837070 31837364 -145136776 - AluSp SINE Alu -19 294 1 726 231 48 102 chrX 31837364 31837432 -145136708 - L1MC4 LINE L1 -216 7826 7756 2322 81 10 0 chrX 31837432 31837729 -145136411 - AluSx SINE Alu -12 300 1 726 231 48 102 chrX 31837729 31837919 -145136221 - L1MC4 LINE L1 -286 7756 7587 2133 113 3 0 chrX 31837922 31838249 -145135891 - AluSx SINE Alu 0 328 1 2263 100 3 3 chrX 31838282 31838581 -145135559 - AluSq SINE Alu -14 299 1 274 233 56 11 chrX 31838719 31838809 -145135331 + MIR SINE MIR 78 171 -91 506 279 8 0 chrX 31838818 31838947 -145135193 + L1ME LINE L1 5541 5670 -451 835 87 0 2 chrX 31838950 31839193 -145134947 + AluSx SINE Alu 1 292 -18 1596 94 153 8 chrX 31839406 31839660 -145134480 + AluSx SINE Alu 2 292 -10 1048 175 0 41 chrX 31840100 31840126 -145134014 + AluJb SINE Alu 114 140 -172 1473 157 108 31 chrX 31840126 31840413 -145133727 + AluJo SINE Alu 1 309 -3 2241 97 10 3 chrX 31840413 31840711 -145133429 + AluSp SINE Alu 1 301 -12 1048 175 0 41 chrX 31840711 31840877 -145133263 + AluJb SINE Alu 138 299 -13 1974 135 35 0 chrX 31840939 31841228 -145132912 + AluSx SINE Alu 1 299 -13 2106 125 0 0 chrX 31841242 31841572 -145132568 - AluSx SINE Alu 0 312 1 878 158 0 0 chrX 31841601 31841734 -145132406 - AluSq/x SINE Alu -180 133 1 275 163 65 76 chrX 31841735 31841827 -145132313 - L1MEd LINE L1 -3795 2334 2244 2066 108 16 32 chrX 31841874 31842189 -145131951 - AluSq SINE Alu -3 310 1 254 237 0 0 chrX 31842189 31842248 -145131892 + L1M4c LINE L1 1631 1689 -4695 2489 79 0 0 chrX 31842420 31842723 -145131417 + AluSx SINE Alu 1 303 -9 2179 98 3 17 chrX 31842725 31843020 -145131120 + AluSg SINE Alu 3 293 -17 1035 200 6 0 chrX 31843075 31843255 -145130885 + MLT1A1 LTR MaLR 185 365 0 2177 121 0 0 chrX 31843269 31843558 -145130582 - AluSx SINE Alu -23 289 1 784 263 87 70 chrX 31843561 31844044 -145130096 - L1MEd LINE L1 -5595 524 6 517 265 83 28 chrX 31844053 31844234 -145129906 - MIR SINE MIR -71 191 1 314 368 78 0 chrX 31844741 31844983 -145129157 - L3 LINE CR1 -1130 447 187 2113 87 47 10 chrX 31845101 31845399 -145128741 + AluSg SINE Alu 2 310 0 514 293 58 23 chrX 31845605 31845864 -145128276 - L2 LINE L2 0 3313 3046 651 281 52 0 chrX 31845886 31846078 -145128062 + L2 LINE L2 2020 2221 -1093 1917 229 37 27 chrX 31846160 31846672 -145127468 - LTR40a LTR ERVL -1 518 2 228 67 0 0 chrX 31846724 31846754 -145127386 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2237 69 43 0 chrX 31846757 31847034 -145127106 - AluY SINE Alu -22 289 1 1638 226 91 71 chrX 31847050 31847288 -145126852 + L1MC5 LINE L1 6047 6279 -1529 1730 133 104 0 chrX 31847288 31847407 -145126733 + AluJb SINE Alu 1 106 -206 405 0 0 0 chrX 31847407 31847452 -145126688 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1730 133 104 0 chrX 31847452 31847602 -145126538 + AluJb SINE Alu 106 298 -14 1638 226 91 71 chrX 31847602 31848352 -145125788 + L1MC5 LINE L1 6279 6937 -871 1263 245 30 19 chrX 31848353 31848724 -145125416 + L2 LINE L2 2213 2587 -727 489 177 0 13 chrX 31848806 31848885 -145125255 + AluJ/FLAM SINE Alu 2 79 -233 909 259 12 16 chrX 31849102 31849357 -145124783 + LTR16A LTR ERVL 174 427 -23 2221 116 3 7 chrX 31849399 31849701 -145124439 - AluSx SINE Alu -11 301 1 261 289 70 28 chrX 31849917 31850059 -145124081 + MER89 LTR ERV1 383 530 -29 250 293 93 40 chrX 31850123 31850273 -145123867 + L2 LINE L2 3155 3312 -1 185 311 14 14 chrX 31850273 31850347 -145123793 - L2 LINE L2 -277 3036 2963 1972 110 10 20 chrX 31850982 31851310 -145122830 + AluSx SINE Alu 1 312 0 1261 97 0 0 chrX 31851310 31851499 -145122641 + AluSq SINE Alu 134 322 0 358 243 171 62 chrX 31851508 31851668 -145122472 - HAL1 LINE L1 -6 2501 2360 2228 106 3 0 chrX 31851668 31851983 -145122157 - AluSp SINE Alu 0 316 1 358 243 171 62 chrX 31851983 31852005 -145122135 - HAL1 LINE L1 -147 2360 2342 279 0 0 0 chrX 31852005 31852036 -145122104 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2058 114 0 0 chrX 31852036 31852317 -145121823 - AluSq SINE Alu -32 281 1 358 243 171 62 chrX 31852317 31852435 -145121705 - HAL1 LINE L1 -164 2343 2165 2448 90 0 0 chrX 31852486 31852797 -145121343 + AluSq SINE Alu 1 311 -2 422 247 80 56 chrX 31852813 31852975 -145121165 - HAL1 LINE L1 -1638 869 704 1954 132 3 7 chrX 31853167 31853455 -145120685 + AluSx SINE Alu 1 287 -25 27 29 0 0 chrX 31853455 31853489 -145120651 + AT_rich Low_complexity Low_complexity 1 34 0 206 275 14 14 chrX 31854088 31854157 -145119983 + L2 LINE L2 2465 2533 -781 526 286 61 21 chrX 31854169 31854449 -145119691 + L1MC4a LINE L1 3683 3973 -2173 1918 145 0 24 chrX 31854497 31854793 -145119347 + AluJo SINE Alu 13 301 -11 5188 134 21 37 chrX 31854864 31855279 -145118861 + L1PA16 LINE L1 4631 5051 -1115 2366 97 3 0 chrX 31855279 31855579 -145118561 + AluSp SINE Alu 1 301 -12 5188 134 21 37 chrX 31855579 31856592 -145117548 + L1PA16 LINE L1 5051 6034 -132 2346 117 0 0 chrX 31856592 31856900 -145117240 + AluSq SINE Alu 1 308 -5 5188 134 21 37 chrX 31856900 31857022 -145117118 + L1PA16 LINE L1 6034 6156 -10 1878 118 0 0 chrX 31857073 31857328 -145116812 + AluSq SINE Alu 42 296 -17 829 141 0 0 chrX 31857395 31857523 -145116617 + L1MB3 LINE L1 6045 6172 -11 306 0 0 0 chrX 31857523 31857557 -145116583 + (TG)n Simple_repeat Simple_repeat 1 34 0 510 289 35 59 chrX 31857578 31857990 -145116150 + L1MC4a LINE L1 4029 4411 -1735 2149 106 3 14 chrX 31857990 31858282 -145115858 - AluSx SINE Alu -23 289 1 510 289 35 59 chrX 31858282 31858548 -145115592 + L1MC4a LINE L1 4411 4682 -1464 255 139 0 0 chrX 31858552 31858588 -145115552 + Alu SINE Alu 3 38 -264 40 49 0 0 chrX 31858658 31858719 -145115421 + AT_rich Low_complexity Low_complexity 1 61 0 1945 89 0 4 chrX 31858946 31859193 -145114947 - AluSx SINE Alu -20 292 47 1947 235 105 37 chrX 31859200 31859523 -145114617 + L1MC4a LINE L1 5005 4919 -1227 1951 100 47 27 chrX 31859523 31859824 -145114316 - AluSx SINE Alu -5 307 1 1947 235 105 37 chrX 31859824 31860342 -145113798 + L1MC4a LINE L1 4918 5399 -747 1226 143 19 46 chrX 31860403 31860619 -145113521 - AluSg/x SINE Alu -12 298 89 1185 51 0 0 chrX 31860625 31860762 -145113378 - AluSq/x SINE Alu -176 137 1 1670 157 33 16 chrX 31860959 31861264 -145112876 - 7SLRNA srpRNA srpRNA -6 314 5 2141 101 25 0 chrX 31861499 31861799 -145112341 - AluSx SINE Alu 0 307 1 2426 83 3 6 chrX 31861815 31862127 -145112013 - AluSq SINE Alu -2 311 1 703 101 0 0 chrX 31862259 31862358 -145111782 - AluSx SINE Alu -10 300 202 2558 116 95 48 chrX 31862359 31862819 -145111321 + LTR21A LTR ERV1 3 487 -18 1684 96 0 0 chrX 31862819 31863027 -145111113 - AluSx SINE Alu -103 209 2 2558 116 95 48 chrX 31863027 31863041 -145111099 + LTR21A LTR ERV1 487 499 -6 1185 94 28 6 chrX 31863306 31863487 -145110653 - LTR54 LTR ERV1 0 510 326 824 106 16 16 chrX 31863527 31863650 -145110490 - LTR54 LTR ERV1 -387 123 1 2415 66 3 13 chrX 31863784 31864086 -145110054 - AluSp SINE Alu -14 299 1 192 267 0 0 chrX 31864398 31864458 -145109682 + CT-rich Low_complexity Low_complexity 1 60 0 307 323 11 7 chrX 31864561 31864649 -145109491 + MIR SINE MIR 60 120 -88 2597 50 0 0 chrX 31864649 31864950 -145109190 + AluY SINE Alu 1 301 -10 307 323 11 7 chrX 31864950 31864979 -145109161 + MIR SINE MIR 120 147 -61 373 167 56 0 chrX 31865110 31865182 -145108958 - L1ME2 LINE L1 -228 5936 5861 1496 149 28 93 chrX 31865373 31865488 -145108652 - L1ME2 LINE L1 -363 5801 5680 2450 70 0 7 chrX 31865488 31865789 -145108351 + AluSc SINE Alu 1 299 -10 1496 149 28 93 chrX 31865789 31865886 -145108254 - L1ME2 LINE L1 -484 5680 5615 2187 64 4 25 chrX 31865886 31866166 -145107974 - AluSq SINE Alu -39 274 1 1496 149 28 93 chrX 31866166 31866275 -145107865 - L1ME2 LINE L1 -549 5615 5500 815 155 42 0 chrX 31866332 31866474 -145107666 - AluSx SINE Alu -1 311 164 238 213 0 0 chrX 31866475 31866522 -145107618 + LTR30 LTR ERV1 1 47 -675 936 131 11 165 chrX 31866522 31866789 -145107351 + LTR12 LTR ERV1 48 273 -441 330 239 46 18 chrX 31866793 31866902 -145107238 + LTR30 LTR ERV1 544 655 -67 575 163 0 0 chrX 31866902 31866994 -145107146 + LTR12 LTR ERV1 490 581 -133 1201 79 0 55 chrX 31866994 31867159 -145106981 - AluSx SINE Alu -146 166 11 2126 122 23 0 chrX 31867222 31867526 -145106614 + AluSq SINE Alu 1 311 -2 1227 145 0 0 chrX 31867669 31867848 -145106292 - AluJ SINE Alu -15 297 119 2029 128 17 7 chrX 31867881 31868178 -145105962 - AluSx SINE Alu -12 300 1 841 92 0 92 chrX 31868182 31868313 -145105827 - AluJ SINE Alu -188 124 6 2235 111 0 7 chrX 31868671 31868978 -145105162 - AluSx SINE Alu -2 310 6 1651 169 36 13 chrX 31869134 31869435 -145104705 + AluJo SINE Alu 1 308 -4 2631 32 7 10 chrX 31869530 31869838 -145104302 + AluY SINE Alu 1 307 -4 246 149 35 0 chrX 31870121 31870208 -145103932 + (TA)n Simple_repeat Simple_repeat 1 90 0 2163 123 0 0 chrX 31870209 31870501 -145103639 - AluSq SINE Alu -20 293 2 2299 97 0 0 chrX 31870741 31871030 -145103110 + AluSc SINE Alu 3 291 -18 27 73 0 0 chrX 31871030 31871085 -145103055 + AT_rich Low_complexity Low_complexity 1 55 0 2532 76 0 0 chrX 31871260 31871564 -145102576 - AluSg SINE Alu -6 304 1 1869 93 0 4 chrX 31872259 31872495 -145101645 + AluSp SINE Alu 62 296 -17 180 111 0 0 chrX 31872538 31872565 -145101575 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 252 288 75 0 chrX 31872566 31872646 -145101494 - L2 LINE L2 -25 3288 3203 2181 131 0 3 chrX 31872828 31873141 -145100999 - AluSx SINE Alu 0 312 1 1031 239 88 54 chrX 31873192 31873217 -145100923 + Charlie8 DNA MER1_type 86 109 -2308 261 0 0 0 chrX 31873217 31873246 -145100894 + (CA)n Simple_repeat Simple_repeat 1 29 0 1031 239 88 54 chrX 31873246 31873572 -145100568 + Charlie8 DNA MER1_type 109 449 -1968 2327 109 3 0 chrX 31873621 31873925 -145100215 - AluSx SINE Alu -7 305 1 185 267 13 27 chrX 31873940 31874015 -145100125 - L2 LINE L2 -264 3008 2935 853 137 0 8 chrX 31874302 31874433 -145099707 - AluSg/x SINE Alu -96 214 85 249 273 68 25 chrX 31874611 31874772 -145099368 + L1MC4a LINE L1 6064 6231 -1577 1001 227 22 4 chrX 31874853 31875078 -145099062 + L1M4 LINE L1 16 244 -6298 * 1238 201 7 37 chrX 31875076 31875375 -145098765 + L1M4 LINE L1 3151 3440 -3204 2175 108 57 0 chrX 31875380 31875676 -145098464 + AluSp SINE Alu 1 313 0 1676 153 34 30 chrX 31875721 31876016 -145098124 - AluSx SINE Alu -16 296 1 1807 154 14 10 chrX 31876052 31876345 -145097795 - AluJb SINE Alu -18 294 1 1115 250 32 40 chrX 31876378 31876449 -145097691 + L1MC4 LINE L1 6696 6766 -1276 1761 88 9 0 chrX 31876449 31876675 -145097465 + AluSg/x SINE Alu 72 299 -13 1115 250 32 40 chrX 31876675 31876728 -145097412 + L1MC4 LINE L1 6766 6818 -1224 2296 80 10 3 chrX 31876728 31877029 -145097111 + AluSc SINE Alu 1 303 -6 1115 250 32 40 chrX 31877029 31877275 -145096865 + L1MC4 LINE L1 6818 7064 -978 2352 102 0 0 chrX 31877345 31877649 -145096491 + AluSx SINE Alu 4 307 -5 1644 136 4 0 chrX 31877734 31877984 -145096156 + L1PA16 LINE L1 5907 6157 -9 29 0 0 25 chrX 31878132 31878152 -145095988 + AT_rich Low_complexity Low_complexity 1 20 -19 2295 73 0 27 chrX 31878152 31878453 -145095687 + AluY SINE Alu 1 293 -18 29 0 0 25 chrX 31878453 31878472 -145095668 + AT_rich Low_complexity Low_complexity 20 39 0 2579 57 0 3 chrX 31878476 31878776 -145095364 + AluSp SINE Alu 1 299 -14 2099 124 0 3 chrX 31878869 31879190 -145094950 + AluSx SINE Alu 3 322 0 1803 201 111 65 chrX 31879210 31879461 -145094679 + MLT1E3 LTR MaLR 1 239 -385 2308 97 0 0 chrX 31879461 31879750 -145094390 + AluSx SINE Alu 1 289 -23 1803 201 111 65 chrX 31879750 31880095 -145094045 + MLT1E3 LTR MaLR 239 624 0 320 306 0 0 chrX 31880099 31880184 -145093956 + L1MC5 LINE L1 7034 7118 -843 261 136 114 0 chrX 31880189 31880233 -145093907 - MER41E LTR ERV1 -147 365 317 21 0 0 0 chrX 31880292 31880313 -145093827 + AT_rich Low_complexity Low_complexity 1 21 0 652 163 42 202 chrX 31880313 31880674 -145093466 + L1MC5 LINE L1 7127 7429 -532 258 237 76 23 chrX 31880690 31880821 -145093319 + L1MC5 LINE L1 7508 7645 -316 2038 92 4 0 chrX 31880828 31881089 -145093051 - AluSx SINE Alu -15 297 36 2179 112 13 16 chrX 31881089 31881401 -145092739 + AluSx SINE Alu 2 312 0 499 274 25 0 chrX 31881401 31881558 -145092582 + L1MC5 LINE L1 7701 7861 -100 753 206 7 0 chrX 31881643 31881779 -145092361 - MER4C LTR ERV1 0 465 329 423 107 0 0 chrX 31881779 31881874 -145092266 - Alu SINE Alu 0 321 227 2182 105 3 46 chrX 31881876 31882200 -145091940 - AluSq SINE Alu -3 310 1 248 102 20 0 chrX 31882263 31882312 -145091828 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 2548 76 0 0 chrX 31882513 31882817 -145091323 - AluSq SINE Alu -9 304 1 180 0 0 0 chrX 31882945 31882965 -145091175 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2283 80 0 17 chrX 31883127 31883426 -145090714 + AluSc SINE Alu 16 309 0 1001 149 82 16 chrX 31883433 31883627 -145090513 + L1MB2 LINE L1 5959 6165 -6 765 288 107 6 chrX 31883688 31884144 -145089996 + L1ME3A LINE L1 5317 5951 -219 * 2153 128 53 60 chrX 31884138 31884537 -145089603 + L1MB2 LINE L1 5721 6118 -53 1530 127 60 0 chrX 31884537 31884784 -145089356 + L1MA5A LINE L1 6028 6294 -3 2153 128 53 60 chrX 31884784 31884799 -145089341 + L1MB2 LINE L1 6118 6132 -39 2122 140 0 0 chrX 31884992 31885299 -145088841 - AluSx SINE Alu -5 307 1 659 34 34 0 chrX 31885299 31885387 -145088753 + (TTTTC)n Simple_repeat Simple_repeat 2 92 0 1630 151 3 72 chrX 31885387 31885691 -145088449 - AluJb SINE Alu -29 283 1 2360 93 0 34 chrX 31885762 31885905 -145088235 + AluSx SINE Alu 1 147 -165 2193 109 14 0 chrX 31885905 31886199 -145087941 + AluSx SINE Alu 1 298 -14 2360 93 0 34 chrX 31886199 31886378 -145087762 + AluSx SINE Alu 147 312 0 2344 78 0 0 chrX 31886522 31886833 -145087307 - AluSp SINE Alu 0 311 1 2356 105 0 9 chrX 31886838 31887153 -145086987 - AluSx SINE Alu 0 312 1 1864 163 0 3 chrX 31887176 31887476 -145086664 - AluJo SINE Alu -13 299 1 24 32 0 0 chrX 31887476 31887507 -145086633 + AT_rich Low_complexity Low_complexity 1 31 0 2256 78 3 40 chrX 31887508 31887829 -145086311 + AluY SINE Alu 1 309 -2 504 191 34 27 chrX 31887845 31887992 -145086148 + L1M4 LINE L1 4298 4445 -1701 505 328 48 38 chrX 31888152 31888445 -145085695 - L2 LINE L2 -1930 1384 1089 352 293 5 66 chrX 31888476 31888674 -145085466 - L2 LINE L2 -2737 577 392 1408 142 0 43 chrX 31888674 31888787 -145085353 + AluJo SINE Alu 11 110 -202 2373 81 0 26 chrX 31888787 31889096 -145085044 - AluSg SINE Alu -9 301 1 1408 142 0 43 chrX 31889096 31889215 -145084925 + AluJo SINE Alu 110 233 -79 2352 88 0 0 chrX 31889451 31889758 -145084382 + AluSc SINE Alu 1 307 -2 729 175 0 132 chrX 31889812 31890001 -145084139 - FRAM SINE Alu -12 164 1 789 176 53 74 chrX 31890002 31890069 -145084071 + L1ME3A LINE L1 5700 5767 -403 474 108 0 0 chrX 31890069 31890143 -145083997 + (TA)n Simple_repeat Simple_repeat 2 75 0 2608 64 0 0 chrX 31890147 31890458 -145083682 - AluY SINE Alu 0 311 1 789 176 53 74 chrX 31890458 31890587 -145083553 + L1ME3A LINE L1 5770 5900 -270 2363 82 3 0 chrX 31890587 31890879 -145083261 + AluSg SINE Alu 1 293 -17 789 176 53 74 chrX 31890879 31890910 -145083230 + L1ME3A LINE L1 5900 5930 -240 1009 219 57 0 chrX 31890910 31891120 -145083020 + MER58A DNA MER1_type 2 223 -1 429 240 10 0 chrX 31891147 31891247 -145082893 - L1ME2 LINE L1 -9 6155 6055 384 136 0 0 chrX 31891255 31891314 -145082826 + L1ME3A LINE L1 5920 5978 -192 2194 46 4 39 chrX 31891420 31891700 -145082440 - AluY SINE Alu -14 297 28 2014 114 3 23 chrX 31891749 31892048 -145082092 + AluJb SINE Alu 1 293 -19 2337 88 0 7 chrX 31892173 31892481 -145081659 + AluY SINE Alu 5 310 -1 1277 151 13 53 chrX 31892564 31892789 -145081351 + MER20 DNA MER1_type 3 218 -1 1526 87 0 5 chrX 31892909 31893104 -145081036 + AluSg/x SINE Alu 115 308 -2 549 188 45 0 chrX 31893141 31893253 -145080887 + MER3 DNA MER1_type 50 166 -43 1085 151 0 0 chrX 31893276 31893428 -145080712 - AluJb SINE Alu -27 285 134 2045 138 0 7 chrX 31893428 31893732 -145080408 - AluJo SINE Alu -9 303 2 247 119 191 0 chrX 31893734 31893776 -145080364 + MER3 DNA MER1_type 159 208 -1 230 219 0 0 chrX 31893747 31893788 -145080352 - MER3 DNA MER1_type -132 77 37 * 507 235 12 54 chrX 31893833 31893938 -145080202 + MIR SINE MIR 74 171 -91 2207 101 24 0 chrX 31893938 31894225 -145079915 + AluSx SINE Alu 1 294 -18 507 235 12 54 chrX 31894225 31894285 -145079855 + MIR SINE MIR 171 232 -30 2338 74 3 23 chrX 31894481 31894806 -145079334 - AluSp SINE Alu 0 313 1 2148 129 0 7 chrX 31894869 31895171 -145078969 + AluSx SINE Alu 1 300 -12 249 189 22 56 chrX 31895211 31895301 -145078839 - L1MC5 LINE L1 -33 7928 7842 332 147 105 53 chrX 31895334 31895429 -145078711 - L1MC5 LINE L1 -30 7931 7832 193 29 29 29 chrX 31895557 31895592 -145078548 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1448 122 5 32 chrX 31895596 31895817 -145078323 - AluJo SINE Alu -16 296 82 405 271 98 25 chrX 31895819 31896055 -145078085 - L1M4 LINE L1 -2268 3878 3626 21 0 0 0 chrX 31896055 31896076 -145078064 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chrX 31896091 31896114 -145078026 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3053 25 6 0 chrX 31896117 31896473 -145077667 - L1PA4 LINE L1 -3 6152 5795 534 46 0 0 chrX 31896473 31896538 -145077602 + L1PA4 LINE L1 5744 5808 -347 2185 111 3 0 chrX 31896649 31896937 -145077203 - AluSp SINE Alu -24 289 1 2333 102 0 0 chrX 31897375 31897668 -145076472 - AluSg SINE Alu -17 293 1 2184 103 0 0 chrX 31897847 31898154 -145075986 - AluSg SINE Alu 0 307 1 1782 174 24 10 chrX 31898172 31898466 -145075674 + AluJb SINE Alu 1 298 -14 334 237 153 23 chrX 31898479 31898610 -145075530 - HAL1 LINE L1 -828 1679 1532 2185 108 0 3 chrX 31898736 31899046 -145075094 - AluSx SINE Alu 0 309 1 2382 100 3 3 chrX 31899150 31899459 -145074681 - AluSg SINE Alu -1 309 1 2217 101 27 0 chrX 31899516 31899813 -145074327 - AluSx SINE Alu -7 305 1 858 150 0 0 chrX 31899831 31899958 -145074182 - FLAM_C SINE Alu -16 127 1 1316 71 12 0 chrX 31900084 31900253 -145073887 - AluSx SINE Alu -16 296 126 1919 165 3 7 chrX 31900253 31900562 -145073578 - AluJb SINE Alu -4 308 1 22 80 0 0 chrX 31900571 31900621 -145073519 + AT_rich Low_complexity Low_complexity 1 50 0 290 235 0 12 chrX 31900660 31900745 -145073395 - L1ME4a LINE L1 -77 6044 5961 3428 94 29 12 chrX 31900853 31901365 -145072775 - L1MA5A LINE L1 -4 6293 5773 2211 91 7 26 chrX 31902097 31902406 -145071734 - AluSq SINE Alu -8 305 3 1183 73 0 0 chrX 31902407 31902543 -145071597 - AluSx SINE Alu -177 136 1 265 256 11 44 chrX 31902858 31902948 -145071192 + L2 LINE L2 3174 3260 -12 2271 117 0 0 chrX 31903202 31903509 -145070631 - AluSg SINE Alu -2 308 2 978 109 8 0 chrX 31904198 31904326 -145069814 - FLAM_C SINE Alu -10 133 5 206 242 0 15 chrX 31904529 31904595 -145069545 + MIR SINE MIR 156 220 -42 1901 145 0 0 chrX 31904806 31905075 -145069065 + AluJo SINE Alu 1 269 -43 1008 223 161 56 chrX 31905140 31905588 -145068552 - MLT1G LTR MaLR -7 583 89 2260 129 6 0 chrX 31905602 31905928 -145068212 - MER51B LTR ERV1 0 377 50 386 121 277 12 chrX 31905944 31906027 -145068113 - MER51A LTR ERV1 -529 105 1 743 158 8 0 chrX 31906089 31906209 -145067931 - MLT1G LTR MaLR -472 123 3 2371 108 0 0 chrX 31906309 31906616 -145067524 - AluSq SINE Alu -6 307 1 2248 101 3 19 chrX 31906737 31907044 -145067096 - AluSg SINE Alu -8 302 1 2254 105 3 0 chrX 31907084 31907378 -145066762 + AluSq SINE Alu 3 297 -16 554 174 101 22 chrX 31907419 31907557 -145066583 + MER3 DNA MER1_type 25 126 -83 1987 149 45 0 chrX 31907574 31907949 -145066191 + MER3 DNA MER1_type 2233 2624 0 342 200 108 83 chrX 31908307 31908387 -145065753 - MIR3 SINE MIR -21 187 102 2403 94 0 0 chrX 31908387 31908685 -145065455 + AluSg SINE Alu 1 298 -12 342 200 108 83 chrX 31908685 31908724 -145065416 - MIR3 SINE MIR -106 102 65 2199 113 0 0 chrX 31908937 31909228 -145064912 - AluSx SINE Alu 0 312 22 1344 169 9 17 chrX 31909646 31909960 -145064180 - MLT1A1 LTR MaLR 0 365 1 2726 101 3 11 chrX 31910033 31910411 -145063729 + THE1C LTR MaLR 1 375 0 10322 100 42 39 chrX 31910411 31911986 -145062154 + THE1C-int LTR MaLR 1 1580 0 2066 127 3 22 chrX 31911986 31912302 -145061838 + THE1C LTR MaLR 1 310 -65 2271 105 7 0 chrX 31912302 31912627 -145061513 - AluSg SINE Alu 0 310 1 1048 128 29 0 chrX 31912627 31912799 -145061341 + L1MB4 LINE L1 6004 6180 0 2147 116 10 3 chrX 31912831 31913134 -145061006 + AluSx SINE Alu 1 305 -7 1047 209 45 11 chrX 31913520 31913788 -145060352 + L1MC5 LINE L1 7637 7913 -48 2162 121 0 0 chrX 31913859 31914149 -145059991 + AluSx SINE Alu 1 290 -22 369 329 61 32 chrX 31914205 31914482 -145059658 + L1MC4a LINE L1 5100 5384 -762 1114 196 104 57 chrX 31914516 31914598 -145059542 - MER2 DNA MER2_type -10 335 258 1614 97 0 31 chrX 31914598 31914825 -145059315 + AluY SINE Alu 92 311 0 1114 196 104 57 chrX 31914825 31915059 -145059081 - MER2 DNA MER2_type -87 258 4 2177 99 0 24 chrX 31915079 31915409 -145058731 + AluSx SINE Alu 1 323 0 947 281 73 47 chrX 31915433 31915498 -145058642 + L1MC4a LINE L1 5404 5466 -2342 2002 92 6 74 chrX 31915498 31915824 -145058316 + AluSx SINE Alu 1 304 -8 947 281 73 47 chrX 31915824 31916253 -145057887 + L1MC4a LINE L1 5466 5911 -1897 276 100 0 0 chrX 31916767 31916807 -145057333 + (TG)n Simple_repeat Simple_repeat 1 40 0 1817 119 0 0 chrX 31916943 31917186 -145056954 - AluSx SINE Alu -69 243 1 36 0 0 0 chrX 31917226 31917262 -145056878 + AT_rich Low_complexity Low_complexity 1 36 0 2180 107 4 0 chrX 31917267 31917585 -145056555 + AluSq SINE Alu 4 322 0 1899 126 4 0 chrX 31917674 31917936 -145056204 + AluJb SINE Alu 1 263 -49 180 0 0 0 chrX 31917945 31917965 -145056175 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 994 276 89 20 chrX 31918102 31918494 -145055646 - MLT1L LTR MaLR -22 593 175 268 330 39 35 chrX 31918567 31918770 -145055370 + L2 LINE L2 2326 2529 -785 956 252 96 37 chrX 31918887 31919375 -145054765 - L1ME4a LINE L1 -4 6117 5601 249 242 15 0 chrX 31919432 31919498 -145054642 - L1MC4 LINE L1 -49 7993 7927 699 278 125 34 chrX 31919672 31919889 -145054251 - L1ME3A LINE L1 -208 5962 5766 2144 93 6 47 chrX 31919889 31920211 -145053929 - AluSg SINE Alu -1 309 1 699 278 125 34 chrX 31920211 31920410 -145053730 - L1ME3A LINE L1 -404 5766 5508 1867 118 30 43 chrX 31920532 31920836 -145053304 - AluSx SINE Alu -12 300 1 239 216 24 104 chrX 31920908 31920964 -145053176 - L1ME4a LINE L1 0 6121 6079 2390 94 7 0 chrX 31920964 31921273 -145052867 + AluSp SINE Alu 1 311 -2 239 216 24 104 chrX 31921273 31921341 -145052799 - L1ME4a LINE L1 -42 6079 6007 * 566 161 55 9 chrX 31921340 31921468 -145052672 + L1MA7 LINE L1 6145 6265 -26 2057 73 26 15 chrX 31921475 31921748 -145052392 - AluSq SINE Alu -8 305 30 1003 149 9 113 chrX 31921756 31921919 -145052221 - AluJo SINE Alu -23 289 111 225 0 0 0 chrX 31921919 31921944 -145052196 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2249 85 0 0 chrX 31921945 31922227 -145051913 - AluSp SINE Alu -31 282 1 1003 149 9 113 chrX 31922227 31922283 -145051857 - AluJo SINE Alu -200 112 91 222 271 45 90 chrX 31923173 31923328 -145050812 + L2 LINE L2 2596 2743 -571 1117 82 0 0 chrX 31923336 31923470 -145050670 + AluSg1 SINE Alu 2 135 -174 2268 79 4 0 chrX 31923470 31923789 -145050351 + AluY SINE Alu 1 320 0 208 325 99 42 chrX 31923838 31924029 -145050111 + L2 LINE L2 2815 3016 -256 2143 120 0 3 chrX 31924100 31924391 -145049749 + AluSx SINE Alu 1 290 -22 341 198 66 11 chrX 31924406 31924497 -145049643 + L1MC4 LINE L1 7289 7384 -658 * 2277 159 10 12 chrX 31924466 31924868 -145049272 + L1PB3 LINE L1 3787 4187 -1959 1109 83 0 0 chrX 31924869 31925001 -145049139 + AluSq/x SINE Alu 1 132 -181 2061 117 32 0 chrX 31925001 31925283 -145048857 + AluSx SINE Alu 6 296 -16 5551 164 23 14 chrX 31925283 31925491 -145048649 + L1PB3 LINE L1 4178 4383 -1771 2319 98 0 3 chrX 31925491 31925797 -145048343 + AluSg SINE Alu 1 305 -5 5551 164 23 14 chrX 31925797 31926887 -145047253 + L1PB3 LINE L1 4383 5485 -669 1876 85 101 0 chrX 31926887 31927187 -145046953 + AluSx SINE Alu 1 326 0 1215 114 6 0 chrX 31927187 31927363 -145046777 + AluSq SINE Alu 134 310 -3 4527 107 16 15 chrX 31927368 31927803 -145046337 + L1PB3 LINE L1 5477 5915 -239 2268 88 0 56 chrX 31927803 31928123 -145046017 - AluSx SINE Alu -10 302 1 4527 107 16 15 chrX 31928123 31928363 -145045777 + L1PB3 LINE L1 5915 6153 -1 1960 232 39 76 chrX 31928367 31928543 -145045597 + L1MC4 LINE L1 7372 7553 -489 2603 58 0 3 chrX 31928543 31928852 -145045288 - AluY SINE Alu -3 308 1 1960 232 39 76 chrX 31928852 31929372 -145044768 + L1MC4 LINE L1 7553 8042 0 192 77 0 0 chrX 31930056 31930082 -145044058 + (A)n Simple_repeat Simple_repeat 1 26 0 2446 87 0 3 chrX 31930278 31930590 -145043550 + AluSq SINE Alu 1 311 -2 1718 126 84 0 chrX 31931132 31931394 -145042746 + AluSx SINE Alu 1 284 -28 230 181 340 21 chrX 31933766 31933860 -145040280 + MIR SINE MIR 108 231 -31 1171 99 0 12 chrX 31934053 31934215 -145039925 + AluSc SINE Alu 137 296 -13 203 229 0 0 chrX 31934512 31934547 -145039593 + polypurine Low_complexity Low_complexity 2 36 0 210 71 0 0 chrX 31934850 31934878 -145039262 + (TG)n Simple_repeat Simple_repeat 2 29 0 1246 194 172 58 chrX 31934881 31935083 -145039057 - L1ME1 LINE L1 -3 6163 5985 2363 83 0 3 chrX 31935083 31935385 -145038755 - AluSg SINE Alu -9 301 1 1246 194 172 58 chrX 31935385 31935558 -145038582 - L1ME1 LINE L1 -181 5985 5735 2055 153 30 89 chrX 31935558 31935721 -145038419 - MLT1C LTR MaLR -1 466 295 2544 76 0 0 chrX 31935721 31936024 -145038116 - AluSx SINE Alu -9 303 1 2055 153 30 89 chrX 31936024 31936355 -145037785 - MLT1C LTR MaLR -172 295 1 1246 194 172 58 chrX 31936355 31936391 -145037749 - L1ME1 LINE L1 -431 5735 5704 308 275 108 0 chrX 31936473 31936593 -145037547 - MIR SINE MIR 0 262 130 2300 97 0 0 chrX 31936701 31936999 -145037141 - AluSp SINE Alu -15 298 1 2498 28 0 3 chrX 31937063 31937370 -145036770 - AluY SINE Alu 0 306 1 2138 78 3 21 chrX 31937377 31937616 -145036524 - AluSx SINE Alu 0 372 130 180 0 0 0 chrX 31937616 31937636 -145036504 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2095 97 0 38 chrX 31937636 31937926 -145036214 - AluSg SINE Alu -31 279 1 2138 78 3 21 chrX 31937926 31938027 -145036113 - AluSx SINE Alu -240 132 36 193 0 61 30 chrX 31938111 31938144 -145035996 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2221 89 4 0 chrX 31938146 31938427 -145035713 - AluSp SINE Alu -31 282 1 244 244 76 42 chrX 31938812 31938931 -145035209 - L1MC4 LINE L1 -426 7616 7494 * 405 269 0 0 chrX 31938904 31939012 -145035128 - L1MC5 LINE L1 -543 7418 7311 2015 134 10 3 chrX 31939020 31939312 -145034828 - AluSx SINE Alu -18 294 1 852 218 118 3 chrX 31939312 31939585 -145034555 - L1MC4 LINE L1 -552 7490 7181 362 284 16 8 chrX 31939965 31940092 -145034048 - LTR33A LTR ERVL 0 523 396 2237 103 0 35 chrX 31940300 31940612 -145033528 - AluSx SINE Alu -11 301 1 2368 94 0 3 chrX 31941400 31941697 -145032443 - AluSp SINE Alu -17 296 1 21 0 0 0 chrX 31941706 31941727 -145032413 + AT_rich Low_complexity Low_complexity 1 21 0 439 101 0 0 chrX 31941940 31942009 -145032131 - Alu SINE Alu -1 310 242 1732 255 45 47 chrX 31942019 31942293 -145031847 - L1MC4 LINE L1 -1875 5933 5660 2141 110 3 3 chrX 31942293 31942584 -145031556 + AluSg SINE Alu 1 291 -19 1732 255 45 47 chrX 31942584 31942948 -145031192 - L1MC4 LINE L1 -2148 5660 5296 767 129 0 8 chrX 31943222 31943346 -145030794 - AluJb SINE Alu -188 124 2 2215 110 0 0 chrX 31943358 31943650 -145030490 - AluSg SINE Alu -18 292 1 2259 94 0 0 chrX 31943697 31943984 -145030156 + AluSg SINE Alu 1 287 -23 21 0 0 0 chrX 31944232 31944253 -145029887 + AT_rich Low_complexity Low_complexity 1 21 0 1828 98 0 4 chrX 31944282 31944518 -145029622 - AluSq SINE Alu -78 235 1 2207 160 70 8 chrX 31944573 31944960 -145029180 + MLT2C2 LTR ERVL 1 411 -53 2393 79 3 3 chrX 31944962 31945267 -145028873 - AluSp SINE Alu -8 305 1 2188 88 0 18 chrX 31945604 31945889 -145028251 + AluSx SINE Alu 1 280 -32 317 0 0 65 chrX 31945896 31945942 -145028198 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 2254 105 3 0 chrX 31946121 31946416 -145027724 + AluSq SINE Alu 1 296 -17 2594 53 3 0 chrX 31946419 31946721 -145027419 + AluY SINE Alu 1 303 -8 1147 102 7 0 chrX 31946780 31946927 -145027213 - AluSq/x SINE Alu -165 148 1 2281 97 0 13 chrX 31947110 31947420 -145026720 - AluSc SINE Alu -3 306 1 1497 173 103 0 chrX 31947476 31947747 -145026393 - AluJb SINE Alu -13 299 1 2264 82 3 0 chrX 31947756 31948060 -145026080 - AluSp SINE Alu 0 305 1 238 225 154 50 chrX 31948060 31948242 -145025898 - HAL1b LINE L1 -671 677 477 247 244 65 113 chrX 31948386 31948463 -145025677 - HAL1b LINE L1 -1053 295 216 2237 110 0 13 chrX 31948463 31948772 -145025368 + AluSg SINE Alu 1 305 -5 247 244 65 113 chrX 31948772 31948924 -145025216 - HAL1b LINE L1 -1132 216 77 789 210 34 23 chrX 31949529 31949705 -145024435 - MER45A DNA AcHobo 0 178 1 10977 172 55 41 chrX 31950282 31950644 -145023496 - Cheshire DNA MER1_type -1 2419 2064 2072 103 33 17 chrX 31950644 31950944 -145023196 + AluSx SINE Alu 1 305 -7 10977 172 55 41 chrX 31950944 31951984 -145022156 - Cheshire DNA MER1_type -356 2064 1040 2347 100 0 0 chrX 31951984 31952285 -145021855 - AluSg1 SINE Alu -8 301 1 10977 172 55 41 chrX 31952285 31952577 -145021563 - Cheshire DNA MER1_type -1380 1040 754 2399 88 0 3 chrX 31952577 31952883 -145021257 - AluSc SINE Alu -4 305 1 10977 172 55 41 chrX 31952883 31953169 -145020971 - Cheshire DNA MER1_type -1666 754 474 2092 107 0 7 chrX 31953169 31953479 -145020661 - AluSc SINE Alu 0 308 1 10977 172 55 41 chrX 31953479 31953816 -145020324 - Cheshire DNA MER1_type -1946 474 1 1866 79 26 140 chrX 31954220 31954562 -145019578 - AluSq SINE Alu 0 303 1 1103 149 15 109 chrX 31954738 31954935 -145019205 - L1MDa LINE L1 -4941 1599 1444 2260 115 7 0 chrX 31954935 31955240 -145018900 - AluSx SINE Alu -5 307 1 1103 149 15 109 chrX 31955240 31955371 -145018769 - L1MDa LINE L1 -5096 1444 1302 2009 126 3 11 chrX 31955939 31956248 -145017892 - AluSx SINE Alu 0 307 1 1928 224 90 59 chrX 31956249 31956393 -145017747 - L1MDa LINE L1 -5368 1172 1034 2217 114 7 10 chrX 31956393 31956700 -145017440 - AluSx SINE Alu -6 306 1 1928 224 90 59 chrX 31956700 31957180 -145016960 - L1MDa LINE L1 -5506 1034 529 23 0 0 0 chrX 31957665 31957688 -145016452 + AT_rich Low_complexity Low_complexity 1 23 0 2190 120 0 7 chrX 31957813 31958113 -145016027 - AluSx SINE Alu -14 298 1 415 318 78 12 chrX 31958348 31958545 -145015595 - MIR SINE MIR -52 210 3 271 228 69 13 chrX 31958785 31958870 -145015270 - MIR SINE MIR -88 120 30 2159 41 94 0 chrX 31958955 31959221 -145014919 - AluY SINE Alu -20 291 1 2017 92 44 20 chrX 31959224 31959518 -145014622 - AluSg SINE Alu -9 301 1 291 54 0 0 chrX 31959622 31959659 -145014481 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chrX 31960009 31960030 -145014110 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chrX 31960974 31961003 -145013137 + GC_rich Low_complexity Low_complexity 1 29 0 225 139 0 0 chrX 31961560 31961603 -145012537 + (CCG)n Simple_repeat Simple_repeat 3 45 0 180 111 0 0 chrX 31961776 31961803 -145012337 + (CCG)n Simple_repeat Simple_repeat 3 29 0 30 27 0 0 chrX 31962229 31962266 -145011874 + GC_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chrX 31963790 31963819 -145010321 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 31964625 31964654 -145009486 + AT_rich Low_complexity Low_complexity 1 29 0 234 322 0 0 chrX 31965080 31965170 -145008970 + L1MC4 LINE L1 6614 6703 -1339 281 307 0 0 chrX 31965177 31965265 -145008875 - L1MC4 LINE L1 -1340 6702 6615 261 233 47 23 chrX 31965226 31965312 -145008828 + L1MC4 LINE L1 6614 6701 -1341 * 1465 119 78 0 chrX 31966283 31966502 -145007638 - MER46A DNA MER2_type 0 236 1 1966 139 7 7 chrX 31966921 31967223 -145006917 - AluSx SINE Alu -10 302 1 2484 87 0 0 chrX 31968092 31968392 -145005748 + AluSx SINE Alu 1 300 -12 2243 109 0 3 chrX 31968710 31969013 -145005127 + AluSx SINE Alu 1 302 -10 2324 80 10 7 chrX 31969354 31969656 -145004484 + AluSg SINE Alu 1 303 -7 2111 132 0 0 chrX 31969885 31970189 -145003951 - AluSq SINE Alu -9 304 1 446 216 216 26 chrX 31970449 31970643 -145003497 - L1MC5 LINE L1 -103 7858 7628 182 272 184 0 chrX 31970972 31971075 -145003065 - L2 LINE L2 -15 3257 3136 1761 147 3 30 chrX 31971267 31971566 -145002574 - AluJb SINE Alu -15 297 7 2209 113 0 3 chrX 31971582 31971875 -145002265 - AluSx SINE Alu -20 292 1 2471 78 3 10 chrX 31972021 31972330 -145001810 + AluSp SINE Alu 3 309 -4 448 292 57 26 chrX 31972619 31972811 -145001329 + MIR SINE MIR 49 246 -16 350 297 226 19 chrX 31973042 31973232 -145000908 + L2 LINE L2 2283 2432 -882 1486 190 37 7 chrX 31973232 31973527 -145000613 - AluJb SINE Alu -8 304 1 350 297 226 19 chrX 31973527 31973602 -145000538 + L2 LINE L2 2432 2603 -711 458 115 0 0 chrX 31973706 31973767 -145000373 + U6 snRNA snRNA 1 61 -46 21 0 0 0 chrX 31973767 31973788 -145000352 + AT_rich Low_complexity Low_complexity 1 21 0 2194 93 7 10 chrX 31973790 31974081 -145000059 + AluSg SINE Alu 1 290 -20 2081 110 28 0 chrX 31974267 31974549 -144999591 - AluSg SINE Alu -20 290 1 2380 87 0 3 chrX 31974693 31974992 -144999148 - AluSx SINE Alu -14 298 1 1698 149 64 7 chrX 31975139 31975421 -144998719 - AluSx SINE Alu -14 298 1 1021 193 63 42 chrX 31975984 31976224 -144997916 + AluJo SINE Alu 64 307 -5 2263 88 0 3 chrX 31976226 31976522 -144997618 + AluSg1 SINE Alu 1 295 -14 198 0 0 0 chrX 31977215 31977237 -144996903 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1954 143 4 0 chrX 31977237 31977516 -144996624 - AluSx SINE Alu -32 280 1 24 0 0 0 chrX 31977662 31977686 -144996454 + AT_rich Low_complexity Low_complexity 1 24 0 4176 172 74 19 chrX 31978055 31978844 -144995296 - L1MD1 LINE L1 -12 6624 5745 2253 86 36 0 chrX 31978844 31979145 -144994995 - AluSq SINE Alu -1 312 1 4176 172 74 19 chrX 31979145 31979494 -144994646 - L1MD1 LINE L1 -891 5745 5417 884 249 12 8 chrX 31979503 31979748 -144994392 - L1MD1 LINE L1 -1163 5377 5132 4426 51 7 10 chrX 31979750 31980335 -144993805 - LTR10C LTR ERV1 0 591 9 810 248 113 54 chrX 31980335 31980478 -144993662 - L1MD1 LINE L1 -1406 5134 5001 1894 131 13 29 chrX 31980478 31980608 -144993532 + AluSx SINE Alu 1 132 -180 2362 74 0 13 chrX 31980608 31980920 -144993220 + AluY SINE Alu 1 308 -3 2321 99 3 0 chrX 31980925 31981227 -144992913 + AluSx SINE Alu 3 305 -7 1894 131 13 29 chrX 31981227 31981404 -144992736 + AluSx SINE Alu 136 309 -3 810 248 113 54 chrX 31981404 31981703 -144992437 - L1MD1 LINE L1 -1539 5001 4666 1742 91 0 0 chrX 31981711 31981932 -144992208 - AluY SINE Alu -12 299 79 1437 200 76 125 chrX 31981961 31982802 -144991338 - L1MD1 LINE L1 -2120 4420 3621 198 0 0 0 chrX 31982803 31982825 -144991315 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1136 89 19 0 chrX 31982825 31982982 -144991158 - AluSg/x SINE Alu -18 294 135 2043 92 53 0 chrX 31982983 31983267 -144990873 - AluSq SINE Alu -13 300 2 423 0 0 0 chrX 31983276 31983323 -144990817 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2098 78 0 48 chrX 31983325 31983620 -144990520 - AluY SINE Alu -30 281 1 683 208 84 45 chrX 31983629 31984009 -144990131 - L1MD1 LINE L1 -2931 3609 3215 3615 184 83 70 chrX 31984025 31984277 -144989863 - L1MD1 LINE L1 -4062 2478 2231 2351 66 0 13 chrX 31984277 31984578 -144989562 - AluY SINE Alu -14 297 1 3615 184 83 70 chrX 31984578 31985773 -144988367 - L1MD1 LINE L1 -4309 2231 1013 1423 215 13 30 chrX 31985775 31986073 -144988067 - AluJo SINE Alu -19 293 1 507 303 124 113 chrX 31986531 31987206 -144986934 - L1MD1 LINE L1 -5602 938 393 312 48 0 0 chrX 31987206 31987248 -144986892 + (TG)n Simple_repeat Simple_repeat 2 43 0 507 303 124 113 chrX 31987248 31987328 -144986812 - L1MD1 LINE L1 -6147 393 315 444 37 0 0 chrX 31987412 31987466 -144986674 + (TG)n Simple_repeat Simple_repeat 2 55 0 931 274 15 38 chrX 31987627 31988018 -144986122 - L1MD1 LINE L1 -6142 398 17 1995 104 57 0 chrX 31988818 31989097 -144985043 + AluSg SINE Alu 1 295 -15 1692 188 69 112 chrX 31989144 31989300 -144984840 - L1M4 LINE L1 -3242 3402 3241 1871 98 98 4 chrX 31989300 31989564 -144984576 + AluSx SINE Alu 1 289 -23 1692 188 69 112 chrX 31989564 31990146 -144983994 - L1M4 LINE L1 -3403 3241 2747 2204 108 3 10 chrX 31990146 31990443 -144983697 + AluSx SINE Alu 1 295 -17 1692 188 69 112 chrX 31990443 31990587 -144983553 - L1M4 LINE L1 -3897 2747 2598 2342 86 7 0 chrX 31990598 31990889 -144983251 - AluSx SINE Alu -19 293 1 1471 224 42 20 chrX 31990918 31991275 -144982865 - MLT1A1 LTR MaLR 0 365 1 4310 223 110 49 chrX 31991283 31993218 -144980922 - L1M4 LINE L1 -4571 2075 2 315 321 104 64 chrX 31993239 31993433 -144980707 - L1MC4a LINE L1 -1211 6597 6412 1558 149 133 3 chrX 31993433 31993741 -144980399 + MER7A DNA MER2_type 1 346 0 315 321 104 64 chrX 31993741 31993920 -144980220 - L1MC4a LINE L1 -1396 6412 6209 1663 182 14 10 chrX 31994354 31994651 -144979489 - AluJb SINE Alu -14 298 1 26 74 0 0 chrX 31994766 31994820 -144979320 + AT_rich Low_complexity Low_complexity 1 54 0 198 103 0 0 chrX 31994852 31994881 -144979259 + (TG)n Simple_repeat Simple_repeat 2 30 0 210 37 0 0 chrX 31994885 31994912 -144979228 + (GA)n Simple_repeat Simple_repeat 2 28 0 580 131 50 0 chrX 31994913 31995012 -144979128 - AluSq/x SINE Alu -202 111 8 249 244 204 18 chrX 31995106 31995327 -144978813 - HAL1 LINE L1 -123 2384 2123 240 154 0 0 chrX 31995437 31995476 -144978664 - HAL1 LINE L1 -550 1957 1919 1194 118 0 0 chrX 31995476 31995646 -144978494 - AluSq SINE Alu -11 302 133 216 0 0 0 chrX 31995646 31995670 -144978470 + (TG)n Simple_repeat Simple_repeat 1 24 0 1663 115 130 7 chrX 31995671 31995948 -144978192 - AluSx SINE Alu 0 310 1 237 118 118 0 chrX 31996016 31996067 -144978073 - HAL1 LINE L1 -651 1856 1800 1366 222 187 16 chrX 31996470 31996999 -144977141 - MLT1G LTR MaLR 0 590 13 982 257 41 55 chrX 31997143 31997559 -144976581 - L1ME3A LINE L1 -11 6159 5750 1740 112 4 12 chrX 31998397 31998647 -144975493 - AluSq SINE Alu -23 290 43 10060 45 6 126 chrX 31998704 32000273 -144973867 - SVA Other Other -5 1381 1 2166 111 7 7 chrX 32000282 32000589 -144973551 - AluSp SINE Alu -6 307 1 281 279 15 0 chrX 32001145 32001213 -144972927 + MIR SINE MIR 86 154 -108 1762 137 32 35 chrX 32001213 32001499 -144972641 + Tigger2a DNA MER2_type 1 287 -2421 2306 82 0 16 chrX 32001499 32001803 -144972337 - AluSq SINE Alu -14 299 1 1762 137 32 35 chrX 32001803 32001860 -144972280 + Tigger2a DNA MER2_type 287 343 -91 212 302 0 0 chrX 32001929 32001982 -144972158 + (TA)n Simple_repeat Simple_repeat 1 53 0 1093 246 72 36 chrX 32002002 32002378 -144971762 + LTR10C LTR ERV1 188 590 -43 468 183 0 21 chrX 32002396 32002489 -144971651 + Tigger2a DNA MER2_type 340 430 -4 322 207 92 23 chrX 32002492 32002579 -144971561 + MIR SINE MIR 155 247 -15 217 213 0 43 chrX 32002821 32002868 -144971272 + MIR SINE MIR 58 102 -160 2376 170 64 28 chrX 32003728 32004414 -144969726 + Tigger7 DNA MER2_type 11 2587 0 222 118 0 0 chrX 32004587 32004621 -144969519 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 1883 154 6 28 chrX 32004830 32005149 -144968991 - AluJo SINE Alu 0 312 1 2119 106 7 10 chrX 32005226 32005527 -144968613 - AluSx SINE Alu -12 300 1 412 259 0 69 chrX 32005851 32005982 -144968158 - MIR SINE MIR -94 168 47 26 30 0 0 chrX 32006360 32006393 -144967747 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrX 32006761 32006784 -144967356 + AT_rich Low_complexity Low_complexity 1 23 0 1956 151 109 2 chrX 32007246 32007678 -144966462 - L1MC3 LINE L1 -1 7784 7307 363 169 45 11 chrX 32007680 32007769 -144966371 - L1MC3 LINE L1 -655 7130 7039 1395 238 193 19 chrX 32007770 32007842 -144966298 - L1MEc LINE L1 -3152 3063 3005 1904 93 116 8 chrX 32007842 32008110 -144966030 - AluSg SINE Alu -13 297 1 1395 238 193 19 chrX 32008110 32008627 -144965513 - L1MEc LINE L1 -3210 3005 2331 2462 71 7 0 chrX 32008627 32008936 -144965204 - AluY SINE Alu 0 311 1 1395 238 193 19 chrX 32008936 32009046 -144965094 - L1MEc LINE L1 -3884 2331 2241 2345 99 3 13 chrX 32009064 32009377 -144964763 - AluSg SINE Alu 0 310 1 2022 208 54 88 chrX 32009387 32010235 -144963905 - L1MD2 LINE L1 0 6242 5367 1835 110 21 45 chrX 32010235 32010525 -144963615 - AluSx SINE Alu 0 312 30 2022 208 54 88 chrX 32010525 32010670 -144963470 - L1MD2 LINE L1 -875 5367 5316 2289 100 0 0 chrX 32010670 32010969 -144963171 - AluSx SINE Alu -13 299 1 2022 208 54 88 chrX 32010969 32011029 -144963111 - L1MD2 LINE L1 -926 5316 5255 833 273 53 47 chrX 32011091 32011735 -144962405 - L1MEc LINE L1 -4663 1733 1086 1232 115 0 0 chrX 32011739 32011904 -144962236 - AluSg/x SINE Alu -6 306 142 189 0 0 0 chrX 32011917 32011938 -144962202 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1966 130 0 7 chrX 32011938 32012223 -144961917 - AluSx SINE Alu -29 283 1 1657 246 108 66 chrX 32012223 32012849 -144961291 - L1MEc LINE L1 -5302 1094 495 378 0 0 0 chrX 32012849 32012891 -144961249 + (TG)n Simple_repeat Simple_repeat 2 43 0 1698 196 17 0 chrX 32012898 32013189 -144960951 - AluJo SINE Alu -16 296 1 1657 246 108 66 chrX 32013189 32013210 -144960930 - L1MEc LINE L1 -5906 490 471 525 138 85 23 chrX 32013210 32013340 -144960800 - L1MA3 LINE L1 0 6305 6168 1657 246 108 66 chrX 32013340 32013697 -144960443 - L1MEc LINE L1 -5925 471 39 204 40 0 0 chrX 32014258 32014283 -144959857 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1833 154 0 20 chrX 32014285 32014577 -144959563 - AluSx SINE Alu -26 286 1 485 244 64 26 chrX 32015107 32015263 -144958877 + MIR SINE MIR 100 261 -1 247 250 53 13 chrX 32015371 32015447 -144958693 - HAL1 LINE L1 -8 2499 2421 561 147 0 11 chrX 32015449 32015544 -144958596 + MER2 DNA MER2_type 245 338 -7 489 310 84 46 chrX 32015593 32015986 -144958154 + L1M4 LINE L1 484 891 -5651 420 247 132 17 chrX 32016047 32016221 -144957919 + L1M4 LINE L1 899 1092 -5454 565 260 59 12 chrX 32016225 32016479 -144957661 + L1MC4 LINE L1 7584 7849 -193 371 157 98 10 chrX 32016522 32016624 -144957516 + L1MC4 LINE L1 7932 8042 0 2047 88 0 4 chrX 32017143 32017403 -144956737 - AluSc SINE Alu -23 286 28 2691 178 65 43 chrX 32017531 32018032 -144956108 - L1ME1 LINE L1 -181 5985 5447 964 110 39 0 chrX 32018032 32018186 -144955954 - L1PA12 LINE L1 0 6168 6009 2691 178 65 43 chrX 32018186 32018541 -144955599 - L1ME1 LINE L1 -719 5447 5101 2512 166 21 56 chrX 32019211 32019273 -144954867 + L1MB2 LINE L1 5621 5684 -487 1936 86 43 47 chrX 32019273 32019574 -144954566 - AluSx SINE Alu -12 300 1 2512 166 21 56 chrX 32019574 32020078 -144954062 + L1MB2 LINE L1 5684 6167 -4 2148 117 0 49 chrX 32020285 32020611 -144953529 - AluSx SINE Alu -2 310 1 180 299 42 69 chrX 32020690 32020834 -144953306 + L2 LINE L2 1944 2083 -1231 264 155 41 124 chrX 32021024 32021077 -144953063 - HAL1 LINE L1 -112 2395 2352 2391 87 7 0 chrX 32021077 32021386 -144952754 - AluSq SINE Alu -2 311 1 264 155 41 124 chrX 32021386 32021429 -144952711 - HAL1 LINE L1 -155 2352 2307 2294 87 0 22 chrX 32021461 32021773 -144952367 - AluSg SINE Alu -5 305 1 2090 139 0 0 chrX 32021777 32022078 -144952062 - AluSx SINE Alu -11 301 1 352 217 179 9 chrX 32022509 32022721 -144951419 - HAL1 LINE L1 -876 1631 1384 313 156 0 47 chrX 32023653 32023717 -144950423 - Charlie1 DNA MER1_type -774 1987 1927 513 273 143 13 chrX 32023720 32023874 -144950266 - MIR SINE MIR -63 199 26 657 203 107 38 chrX 32024181 32024525 -144949615 - MLT1D LTR MaLR 0 505 64 1766 125 131 3 chrX 32024790 32025110 -144949030 - MER46B DNA MER2_type 0 236 1 12947 124 34 54 chrX 32025510 32026066 -144948074 + Tigger1 DNA MER2_type 22 588 -1830 338 165 76 38 chrX 32026066 32026145 -144947995 - AluY SINE Alu -11 290 209 12947 124 34 54 chrX 32026145 32026182 -144947958 + Tigger1 DNA MER2_type 588 624 -1794 1607 162 58 11 chrX 32026182 32026460 -144947680 - AluJo SINE Alu -21 291 1 12947 124 34 54 chrX 32026460 32028233 -144945907 + Tigger1 DNA MER2_type 624 2418 0 2110 127 0 3 chrX 32028263 32028554 -144945586 - AluSx SINE Alu -22 290 1 1926 198 135 34 chrX 32028555 32028954 -144945186 - Charlie1 DNA MER1_type -678 2083 1726 2322 93 3 0 chrX 32028954 32029255 -144944885 + AluSp SINE Alu 1 302 -11 1926 198 135 34 chrX 32029255 32029546 -144944594 - Charlie1 DNA MER1_type -1035 1726 1 2335 74 10 7 chrX 32029682 32029978 -144944162 - AluY SINE Alu -13 298 2 927 223 155 76 chrX 32030199 32030239 -144943901 - L1M4 LINE L1 -1205 4941 4906 2330 78 0 7 chrX 32030239 32030533 -144943607 - AluSc SINE Alu -17 292 1 927 223 155 76 chrX 32030533 32031085 -144943055 - L1M4 LINE L1 -1240 4906 4302 616 210 65 28 chrX 32031101 32031315 -144942825 - L1MEc LINE L1 -4331 2065 1844 1094 136 14 38 chrX 32031348 32031561 -144942579 - Tigger1 DNA MER2_type -2 2416 2209 505 107 291 0 chrX 32031593 32031696 -144942444 - Tigger1 DNA MER2_type -2285 133 1 2253 192 21 10 chrX 32031742 32032227 -144941913 - L1ME1 LINE L1 -256 5910 5421 1150 209 66 68 chrX 32032225 32032270 -144941870 - L1ME1 LINE L1 -1383 4763 4719 * 2035 118 4 0 chrX 32032270 32032549 -144941591 + AluSq SINE Alu 1 280 -33 1150 209 66 68 chrX 32032549 32033020 -144941120 - L1ME1 LINE L1 -1427 4719 4248 960 230 30 8 chrX 32033031 32033296 -144940844 - L1MEc LINE L1 -4533 1863 1593 526 231 96 5 chrX 32033441 32033640 -144940500 - L1MEc LINE L1 -6144 252 36 2109 128 21 0 chrX 32034301 32034591 -144939549 - AluSx SINE Alu -16 296 1 464 270 99 12 chrX 32034625 32034947 -144939193 - L1M4 LINE L1 -855 5291 4942 321 252 195 0 chrX 32035137 32035296 -144938844 - L1M4 LINE L1 -3819 2327 2138 2280 60 49 3 chrX 32035593 32035877 -144938263 - AluY SINE Alu -14 297 1 29 28 0 0 chrX 32037254 32037290 -144936850 + AT_rich Low_complexity Low_complexity 1 36 0 1776 143 17 20 chrX 32037310 32037611 -144936529 + AluJb SINE Alu 1 300 -12 2263 74 3 17 chrX 32038222 32038520 -144935620 - AluSg SINE Alu -16 294 1 267 54 0 0 chrX 32038779 32038816 -144935324 + (TG)n Simple_repeat Simple_repeat 1 37 0 3990 54 6 12 chrX 32038954 32039470 -144934670 + LTR10D LTR ERV1 1 513 0 655 227 118 45 chrX 32040003 32040223 -144933917 + MIR SINE MIR 25 260 -2 2203 110 0 3 chrX 32040473 32040774 -144933366 - AluSq SINE Alu -13 300 1 1373 151 83 30 chrX 32040967 32041264 -144932876 - AluJo SINE Alu 0 316 6 189 74 0 0 chrX 32041268 32041295 -144932845 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 427 263 79 0 chrX 32041509 32041676 -144932464 - MLT1J LTR MaLR -290 173 15 1789 132 53 4 chrX 32042006 32042272 -144931868 + AluJb SINE Alu 17 295 -17 550 117 225 8 chrX 32043712 32043832 -144930308 - L1MB2 LINE L1 -14 6157 6012 32 43 0 0 chrX 32043994 32044040 -144930100 + AT_rich Low_complexity Low_complexity 1 46 0 379 326 169 4 chrX 32044265 32044538 -144929602 - L3 LINE CR1 -267 1310 993 229 280 0 0 chrX 32044561 32044611 -144929529 + polypyrimidine Low_complexity Low_complexity 1 50 0 1548 174 7 33 chrX 32044612 32044911 -144929229 - AluJo SINE Alu -21 291 1 228 347 33 8 chrX 32044915 32045036 -144929104 - L3 LINE CR1 -615 962 839 2284 106 0 0 chrX 32045059 32045361 -144928779 + AluSq SINE Alu 11 312 -1 862 166 57 26 chrX 32046085 32046278 -144927862 - MER3 DNA MER1_type 0 209 11 2265 93 0 3 chrX 32046383 32046683 -144927457 - AluY SINE Alu -12 299 1 225 0 0 0 chrX 32046806 32046831 -144927309 + (T)n Simple_repeat Simple_repeat 1 25 0 318 50 0 0 chrX 32046832 32046872 -144927268 - MER4E LTR ERV1 -74 692 653 231 307 23 34 chrX 32050529 32050617 -144923523 + MIR SINE MIR 60 146 -116 21 0 0 0 chrX 32050735 32050756 -144923384 + AT_rich Low_complexity Low_complexity 1 21 0 3319 136 29 7 chrX 32050801 32051381 -144922759 - Tigger1 DNA MER2_type -1 2417 1825 1658 162 51 30 chrX 32051382 32051678 -144922462 + AluJo SINE Alu 1 302 -10 8909 126 14 7 chrX 32051678 32053123 -144921017 - Tigger1 DNA MER2_type -963 1455 1 2100 131 0 10 chrX 32053346 32053652 -144920488 - AluJo SINE Alu -9 303 1 2599 43 0 3 chrX 32054079 32054379 -144919761 - AluY SINE Alu -12 299 1 883 277 106 6 chrX 32055234 32055563 -144918577 - LTR16A LTR ERVL -64 386 25 2325 100 3 0 chrX 32055898 32056199 -144917941 + AluSp SINE Alu 1 302 -11 2605 48 3 0 chrX 32056615 32056925 -144917215 - AluY SINE Alu 0 311 1 27 49 0 0 chrX 32057588 32057629 -144916511 + AT_rich Low_complexity Low_complexity 1 41 0 249 240 0 0 chrX 32057843 32057893 -144916247 - MLT1J LTR MaLR -112 399 350 306 265 130 19 chrX 32057897 32058096 -144916044 - MLT1L LTR MaLR -8 605 352 1862 103 95 129 chrX 32058772 32059275 -144914865 - LTR21A LTR ERV1 -19 486 1 2309 92 3 0 chrX 32059963 32060256 -144913884 + AluSx SINE Alu 1 294 -18 997 246 264 38 chrX 32060470 32061347 -144912793 - HAL1 LINE L1 -657 1850 775 474 125 4 63 chrX 32062581 32062679 -144911461 - L1M3c LINE L1 -5109 1032 933 375 204 0 31 chrX 32062825 32062923 -144911217 - L1MB8 LINE L1 -7 6171 6077 280 175 0 0 chrX 32062923 32062980 -144911160 + LTR28 LTR ERV1 1 57 -963 * 1531 162 65 58 chrX 32062952 32063365 -144910775 + MER61C LTR ERV1 14 429 -5 2199 162 23 36 chrX 32063435 32063634 -144910506 - L1MB8 LINE L1 -190 5994 5794 1370 167 160 17 chrX 32063634 32063934 -144910206 + MER2 DNA MER2_type 2 344 0 2199 162 23 36 chrX 32063934 32064259 -144909881 - L1MB8 LINE L1 -390 5794 5477 548 165 0 66 chrX 32064301 32064422 -144909718 - L1MB8 LINE L1 -981 5165 5053 587 236 120 82 chrX 32064443 32064515 -144909625 - L1MC/D LINE L1 -2076 5732 5664 1887 147 0 33 chrX 32064515 32064814 -144909326 - AluJo SINE Alu -23 289 1 587 236 120 82 chrX 32064814 32065165 -144908975 - L1MC/D LINE L1 -2144 5664 5293 709 344 61 33 chrX 32065185 32065828 -144908312 - L1MC/D LINE L1 -875 5271 4611 2092 209 91 12 chrX 32065908 32066502 -144907638 - L1ME1 LINE L1 -63 6103 5463 227 253 0 45 chrX 32066512 32066666 -144907474 + CT-rich Low_complexity Low_complexity 1 147 0 2054 241 134 44 chrX 32066690 32067236 -144906904 - L1ME1 LINE L1 -845 5301 4806 2287 73 7 7 chrX 32067236 32067536 -144906604 - AluSc SINE Alu -1 308 9 2054 241 134 44 chrX 32067536 32068228 -144905912 - L1ME1 LINE L1 -1340 4806 3951 3332 166 87 10 chrX 32068289 32068977 -144905163 - MER21B LTR ERV1 -20 843 103 310 183 0 28 chrX 32068977 32069048 -144905092 - MER21B LTR ERV1 -708 155 87 1978 93 7 11 chrX 32069050 32069319 -144904821 + AluSx SINE Alu 1 268 -44 307 88 281 0 chrX 32069744 32069801 -144904339 + MADE1 DNA Mariner 1 73 -7 209 372 61 39 chrX 32070390 32070570 -144903570 - MIR3 SINE MIR -9 199 16 189 0 0 0 chrX 32070658 32070679 -144903461 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 41343 42 4 1 chrX 32070679 32076797 -144897343 - L1PA4 LINE L1 -16 6139 3 480 162 30 0 chrX 32077096 32077195 -144896945 - MER58 DNA MER1_type 0 2420 2319 240 200 243 0 chrX 32077201 32077271 -144896869 - MER58 DNA MER1_type -2333 87 1 1984 112 3 37 chrX 32077506 32077839 -144896301 + AluSx SINE Alu 2 324 0 465 325 86 23 chrX 32077847 32078149 -144895991 - L1MC/D LINE L1 -1665 4481 4161 353 149 15 0 chrX 32078549 32078616 -144895524 + CT-rich Low_complexity Low_complexity 1 68 0 335 298 44 85 chrX 32078650 32078898 -144895242 - L1MC5 LINE L1 -385 7576 7339 2161 98 11 17 chrX 32078922 32079237 -144894903 - AluSq SINE Alu 0 313 1 2471 77 6 0 chrX 32079460 32079771 -144894369 - AluSp SINE Alu 0 313 1 2113 114 10 3 chrX 32079805 32080094 -144894046 - AluSc SINE Alu -18 291 1 1141 251 111 23 chrX 32080153 32080596 -144893544 + HsTC2a DNA Tc2 100 581 -163 846 156 0 0 chrX 32080629 32080757 -144893383 - FLAM_C SINE Alu -4 129 2 1917 81 0 0 chrX 32080889 32081124 -144893016 + AluSc SINE Alu 56 290 -19 268 250 73 10 chrX 32081179 32081275 -144892865 - L1MEd LINE L1 -4875 1244 1143 2484 127 37 47 chrX 32081318 32081830 -144892310 - L1MA7 LINE L1 -102 6189 5683 1590 140 71 37 chrX 32081842 32082164 -144891976 - LTR10A LTR ERV1 -61 548 216 503 171 9 0 chrX 32082268 32082373 -144891767 - L1MA7 LINE L1 -605 5686 5581 321 244 140 55 chrX 32082464 32082628 -144891512 - L1MEd LINE L1 -5903 216 39 1744 111 32 25 chrX 32082709 32083016 -144891124 - AluSx SINE Alu 0 309 1 539 226 22 115 chrX 32083151 32083299 -144890841 - MIR SINE MIR -29 233 109 1649 185 13 20 chrX 32083299 32083623 -144890517 - AluJo SINE Alu 0 322 1 539 226 22 115 chrX 32083623 32083698 -144890442 - MIR SINE MIR -153 109 29 216 262 0 0 chrX 32083684 32083726 -144890414 + MIR SINE MIR 47 88 -174 * 182 281 18 18 chrX 32084085 32084142 -144889998 - L2 LINE L2 -94 3219 3163 3385 134 89 48 chrX 32084165 32084919 -144889221 - LTR1 LTR ERV1 0 785 1 244 279 73 110 chrX 32085293 32085648 -144888492 - L2 LINE L2 -570 2744 2403 201 154 0 0 chrX 32085816 32085855 -144888285 + T-rich Low_complexity Low_complexity 2 40 0 477 151 35 12 chrX 32086163 32086248 -144887892 - Tigger7 DNA MER2_type -9 2478 2392 225 114 0 0 chrX 32086248 32086283 -144887857 - MER4E LTR ERV1 0 766 732 893 102 110 0 chrX 32086284 32086411 -144887729 + AluSq/x SINE Alu 1 141 -172 1615 166 195 46 chrX 32086428 32086905 -144887235 - LTR10A LTR ERV1 -61 548 1 11344 113 48 47 chrX 32086932 32091113 -144883027 - Harlequin LTR ERV1 -26 7759 704 8550 202 23 13 chrX 32091247 32093053 -144881087 + HERVI LTR ERV1 606 2429 -5356 219 236 55 0 chrX 32093129 32093184 -144880956 + GA-rich Low_complexity Low_complexity 6 63 0 494 234 68 85 chrX 32093320 32093615 -144880525 - LTR10A-int LTR ERV1 -6359 290 1 1649 141 89 35 chrX 32093624 32093971 -144880169 - LTR10A LTR ERV1 -61 548 183 269 182 55 0 chrX 32094018 32094073 -144880067 - LTR10A LTR ERV1 -551 58 1 1125 126 0 0 chrX 32094073 32094224 -144879916 + AluSc SINE Alu 140 290 -19 3755 99 67 35 chrX 32094224 32094882 -144879258 + HSMAR2 DNA Mariner 624 1302 0 257 258 117 80 chrX 32094908 32095071 -144879069 - L2 LINE L2 -24 3289 3121 * 373 232 104 24 chrX 32095038 32095163 -144878977 + MIR SINE MIR 5 139 -123 1715 58 0 0 chrX 32095482 32095687 -144878453 + AluY SINE Alu 107 311 0 235 291 36 64 chrX 32095893 32096003 -144878137 + L2 LINE L2 3182 3288 -25 27 0 0 0 chrX 32096060 32096087 -144878053 + AT_rich Low_complexity Low_complexity 1 27 0 3408 106 129 3 chrX 32096346 32096910 -144877230 - MER41B LTR ERV1 0 635 1 1104 269 18 0 chrX 32096952 32097235 -144876905 + LTR16C LTR ERVL 195 482 -9 952 118 92 20 chrX 32097473 32097626 -144876514 + FRAM SINE Alu 2 165 -11 26 0 0 0 chrX 32097634 32097660 -144876480 + AT_rich Low_complexity Low_complexity 1 26 0 192 305 146 0 chrX 32098953 32099035 -144875105 + MIR SINE MIR 38 131 -77 1585 167 7 14 chrX 32099040 32099365 -144874775 - AluJo SINE Alu 0 329 7 2433 73 3 7 chrX 32099481 32099784 -144874356 - AluSx SINE Alu -8 304 3 261 354 39 15 chrX 32100336 32100466 -144873674 - MIR3 SINE MIR -9 199 67 1913 143 0 40 chrX 32102374 32102696 -144871444 - AluJb SINE Alu -1 311 3 423 0 0 0 chrX 32103737 32103784 -144870356 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2256 114 0 3 chrX 32103784 32104082 -144870058 - AluSc SINE Alu -10 299 1 408 253 6 56 chrX 32106168 32106330 -144867810 - L1ME3 LINE L1 -9 6153 6000 21 0 0 0 chrX 32107064 32107085 -144867055 + AT_rich Low_complexity Low_complexity 1 21 0 387 287 32 21 chrX 32107205 32107487 -144866653 + L1M4 LINE L1 4765 5049 -1097 328 336 36 15 chrX 32109660 32109797 -144864343 - MIR3 SINE MIR -9 199 60 377 240 0 0 chrX 32109797 32109895 -144864245 - L1ME2 LINE L1 -6 6160 6060 268 292 130 13 chrX 32112695 32112849 -144861291 - MLT1L LTR MaLR 0 615 444 263 305 84 0 chrX 32112981 32113076 -144861064 - MLT1L LTR MaLR -371 244 142 224 340 109 41 chrX 32113418 32113565 -144860575 + MIR SINE MIR 31 187 -75 6462 73 14 8 chrX 32113598 32114709 -144859431 - L1PB1 LINE L1 -3 6148 5029 2263 115 0 0 chrX 32115115 32115410 -144858730 - AluSx SINE Alu -17 295 1 2192 89 10 20 chrX 32116493 32116797 -144857343 + AluSq SINE Alu 1 301 -12 601 143 0 62 chrX 32116967 32117079 -144857061 + AluSq/x SINE Alu 1 105 -208 693 176 0 0 chrX 32117141 32117249 -144856891 + AluSq/x SINE Alu 1 108 -204 313 75 15 60 chrX 32117249 32117316 -144856824 + (CA)n Simple_repeat Simple_repeat 2 65 0 2220 79 3 63 chrX 32117744 32118060 -144856080 - AluSq SINE Alu -16 297 1 2008 124 7 0 chrX 32119100 32119390 -144854750 + AluSq SINE Alu 1 292 -21 1138 134 12 0 chrX 32119401 32119572 -144854568 + AluSg/x SINE Alu 125 297 -15 238 221 103 0 chrX 32119772 32119840 -144854300 - MER5C DNA MER1_type -27 297 223 1790 145 50 20 chrX 32120639 32120942 -144853198 - AluSx SINE Alu 0 312 1 202 143 24 0 chrX 32122470 32122512 -144851628 + T-rich Low_complexity Low_complexity 2 44 0 1266 100 6 0 chrX 32122538 32122698 -144851442 - AluSq SINE Alu -152 161 1 1952 147 17 0 chrX 32123500 32123800 -144850340 - AluSx SINE Alu -7 305 1 2368 72 0 0 chrX 32125633 32125946 -144848194 - AluY SINE Alu 0 313 1 698 188 0 7 chrX 32126054 32126192 -144847948 - FRAM SINE Alu -1 175 39 25 0 0 0 chrX 32127170 32127195 -144846945 + AT_rich Low_complexity Low_complexity 1 25 0 2185 118 0 3 chrX 32127887 32128184 -144845956 + AluSx SINE Alu 1 296 -16 1415 39 0 22 chrX 32128544 32128726 -144845414 + L1PA8 LINE L1 5991 6168 -4 201 333 0 0 chrX 32129027 32129078 -144845062 - MER5B DNA MER1_type -2 176 126 328 298 112 12 chrX 32129257 32129418 -144844722 - L1ME LINE L1 -4751 1675 1499 6217 53 13 29 chrX 32129459 32130284 -144843856 - SVA Other Other 0 1386 575 1886 128 10 14 chrX 32130423 32130712 -144843428 - AluSx SINE Alu -24 288 1 1121 150 12 0 chrX 32130741 32130914 -144843226 + AluSg/x SINE Alu 137 311 -1 662 238 45 85 chrX 32130952 32131528 -144842612 + L1MEc LINE L1 969 1521 -4875 333 190 40 34 chrX 32131528 32131579 -144842561 + L1MEc LINE L1 2192 2241 -3991 318 50 0 0 chrX 32131579 32131619 -144842521 + (CCA)n Simple_repeat Simple_repeat 1 40 0 333 190 40 34 chrX 32131619 32131687 -144842453 + L1MEc LINE L1 2241 2327 -3905 256 250 71 24 chrX 32131738 32131822 -144842318 - L1M4 LINE L1 -1302 4844 4757 896 318 45 14 chrX 32132121 32132628 -144841512 - L1M4 LINE L1 -1985 4161 3639 3069 154 47 21 chrX 32132638 32132979 -144841161 + L1MB3 LINE L1 5570 5934 -249 2297 109 7 0 chrX 32132979 32133282 -144840858 - AluSx SINE Alu -6 306 2 3069 154 47 21 chrX 32133282 32133518 -144840622 + L1MB3 LINE L1 5934 6162 -21 333 264 101 66 chrX 32133785 32134012 -144840128 + L1MC4a LINE L1 5740 5974 -1834 1546 154 32 58 chrX 32134420 32134732 -144839408 - MER7A DNA MER2_type -40 306 5 2014 133 7 3 chrX 32134800 32135094 -144839046 - AluSx SINE Alu -17 295 1 2081 141 0 0 chrX 32135275 32135581 -144838559 - AluJb SINE Alu -6 306 1 414 38 23 114 chrX 32136277 32136408 -144837732 + SVA Other Other 1 119 -1267 328 94 0 0 chrX 32136519 32136572 -144837568 + Alu SINE Alu 249 301 0 1722 259 84 25 chrX 32136578 32137208 -144836932 - L1ME LINE L1 -5342 1074 408 281 309 71 21 chrX 32137305 32137514 -144836626 - L1M3 LINE L1 -361 5810 5582 453 267 59 12 chrX 32137745 32137951 -144836189 - L1M3 LINE L1 -1018 5128 4915 217 309 83 0 chrX 32138247 32138331 -144835809 + L2 LINE L2 3182 3272 0 2375 85 3 3 chrX 32138450 32138755 -144835385 + AluSp SINE Alu 2 306 -7 28 29 0 0 chrX 32139285 32139320 -144834820 + AT_rich Low_complexity Low_complexity 1 35 0 2243 101 0 0 chrX 32139403 32139699 -144834441 - AluSg SINE Alu -14 296 1 1567 153 35 28 chrX 32141099 32141386 -144832754 - AluJo SINE Alu -23 289 1 2241 119 0 0 chrX 32141543 32141845 -144832295 + AluSc SINE Alu 1 302 -7 284 333 36 62 chrX 32143081 32143218 -144830922 + MIR3 SINE MIR 21 153 -55 939 197 18 57 chrX 32143218 32143446 -144830694 + MER20 DNA MER1_type 1 219 0 284 333 36 62 chrX 32143446 32143500 -144830640 + MIR3 SINE MIR 153 207 -1 206 160 0 20 chrX 32143652 32143702 -144830438 + (TTTAA)n Simple_repeat Simple_repeat 1 49 0 324 259 175 56 chrX 32144906 32145049 -144829091 - MIR3 SINE MIR -2 206 47 258 370 29 17 chrX 32145528 32145701 -144828439 + L2 LINE L2 2216 2390 -924 239 266 51 38 chrX 32146606 32146685 -144827455 + L2 LINE L2 3184 3263 -50 23 78 0 0 chrX 32146812 32146863 -144827277 + AT_rich Low_complexity Low_complexity 1 51 0 2201 130 0 0 chrX 32149875 32150183 -144823957 - AluSx SINE Alu -4 308 1 518 277 113 4 chrX 32150485 32150793 -144823347 - L1MC4a LINE L1 -338 5817 5616 236 288 53 53 chrX 32152946 32153078 -144821062 - L1ME LINE L1 -420 5701 5570 1495 250 244 69 chrX 32153255 32154367 -144819773 - L2 LINE L2 0 3313 1869 793 204 129 5 chrX 32154367 32154553 -144819587 + MER58C DNA MER1_type 3 211 -4 1495 250 244 69 chrX 32154553 32154926 -144819214 - L2 LINE L2 -1444 1869 1562 2311 98 3 0 chrX 32156037 32156344 -144817796 - AluSx SINE Alu -4 308 1 27 0 0 0 chrX 32156945 32156972 -144817168 + AT_rich Low_complexity Low_complexity 1 27 0 786 182 7 14 chrX 32156976 32157124 -144817016 - AluJo SINE Alu -30 282 136 482 169 34 0 chrX 32157141 32157259 -144816881 + CT-rich Low_complexity Low_complexity 1 122 0 835 155 0 0 chrX 32157259 32157388 -144816752 - AluJo SINE Alu -173 129 1 24 0 0 0 chrX 32159932 32159956 -144814184 + AT_rich Low_complexity Low_complexity 1 24 0 210 37 0 0 chrX 32160124 32160151 -144813989 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2127 102 10 19 chrX 32160154 32160467 -144813673 - AluSp SINE Alu -3 310 1 21 0 0 0 chrX 32160585 32160606 -144813534 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chrX 32161222 32161259 -144812881 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chrX 32161259 32161284 -144812856 + (TA)n Simple_repeat Simple_repeat 1 25 0 6861 54 2 2 chrX 32161284 32162662 -144811478 - L1PA6 LINE L1 -19 6135 4759 21 82 0 0 chrX 32163864 32163913 -144810227 + AT_rich Low_complexity Low_complexity 1 49 0 2321 108 20 3 chrX 32166172 32166523 -144807617 - L1MB2 LINE L1 -17 6154 5798 279 164 0 0 chrX 32166975 32167036 -144807104 + T-rich Low_complexity Low_complexity 1 61 0 495 48 0 0 chrX 32167884 32167946 -144806194 + (TATG)n Simple_repeat Simple_repeat 4 65 0 2223 88 0 7 chrX 32167949 32168233 -144805907 - AluSx SINE Alu -26 286 5 671 167 6 8 chrX 32168355 32168529 -144805611 - MER20 DNA MER1_type 0 219 1 2295 97 3 0 chrX 32169323 32169623 -144804517 - AluSp SINE Alu -12 301 1 2296 90 3 3 chrX 32170160 32170470 -144803670 - AluY SINE Alu -1 310 1 1782 144 21 7 chrX 32170548 32170832 -144803308 + AluJb SINE Alu 1 288 -24 21 0 0 31 chrX 32171334 32171350 -144802790 + AT_rich Low_complexity Low_complexity 1 16 -15 791 129 0 38 chrX 32171350 32171482 -144802658 - FLAM_C SINE Alu -6 127 1 21 0 0 31 chrX 32171482 32171497 -144802643 + AT_rich Low_complexity Low_complexity 16 31 0 21 0 0 0 chrX 32171557 32171578 -144802562 + AT_rich Low_complexity Low_complexity 1 21 0 332 299 23 0 chrX 32172543 32172630 -144801510 + MIR SINE MIR 56 144 -64 320 267 62 51 chrX 32172968 32173010 -144801130 - MER5B DNA MER1_type 0 178 138 1289 162 151 19 chrX 32173010 32173275 -144800865 - AluJo SINE Alu 0 302 3 320 267 62 51 chrX 32173275 32173408 -144800732 - MER5B DNA MER1_type -40 138 1 286 218 0 0 chrX 32173675 32173730 -144800410 + Tigger5 DNA MER2_type 1 55 -2268 566 112 0 22 chrX 32173740 32173829 -144800311 + Tigger5 DNA MER2_type 2237 2323 0 534 240 135 31 chrX 32173832 32174024 -144800116 - MIR SINE MIR -49 213 2 217 180 40 0 chrX 32175032 32175082 -144799058 + GA-rich Low_complexity Low_complexity 4 55 0 266 307 124 22 chrX 32175441 32175666 -144798474 + MARNA DNA Mariner 173 420 -166 214 305 0 0 chrX 32175789 32175848 -144798292 - MIR SINE MIR -62 146 88 43 20 0 0 chrX 32176689 32176739 -144797401 + AT_rich Low_complexity Low_complexity 1 50 0 1413 195 125 7 chrX 32377261 32377711 -144596429 + MLT1E LTR MaLR 4 593 0 21 0 0 0 chrX 32377846 32377867 -144596273 + AT_rich Low_complexity Low_complexity 1 21 0 2274 41 0 22 chrX 32378923 32379193 -144594947 + L1PA8 LINE L1 5909 6172 0 2228 114 0 3 chrX 32379386 32379684 -144594456 + AluSg SINE Alu 1 297 -13 1287 306 47 44 chrX 32379817 32380367 -144593773 + LTR67 LTR ERVL 3 554 -3 324 277 50 20 chrX 32381010 32381111 -144593029 - L2 LINE L2 0 3313 3210 203 281 16 0 chrX 32381231 32381295 -144592845 - MIR3 SINE MIR -6 202 138 236 297 16 0 chrX 32381357 32381421 -144592719 - MIR SINE MIR -85 123 59 186 71 0 0 chrX 32382103 32382131 -144592009 + (TC)n Simple_repeat Simple_repeat 1 28 0 324 0 0 0 chrX 32382131 32382167 -144591973 + (TG)n Simple_repeat Simple_repeat 2 37 0 420 161 0 0 chrX 32382401 32382463 -144591677 - Tigger5 DNA MER2_type 0 2323 2262 413 228 0 0 chrX 32382457 32382536 -144591604 + Tigger5 DNA MER2_type 2242 2320 -3 * 437 192 13 0 chrX 32382536 32382613 -144591527 - Tigger5 DNA MER2_type -2245 78 1 574 224 116 110 chrX 32382615 32382950 -144591190 - MLT1H1 LTR MaLR -67 488 152 923 288 52 29 chrX 32384789 32385197 -144588943 + MER90 LTR ERV1 138 596 -18 658 256 154 8 chrX 32385546 32385780 -144588360 + LTR16A1 LTR ERVL 188 455 -2 387 310 31 31 chrX 32385782 32385950 -144588190 - MIR SINE MIR -66 142 16 320 251 113 19 chrX 32387810 32387983 -144586157 + MIR SINE MIR 42 228 -34 1027 247 71 0 chrX 32388105 32388344 -144585796 - MIR SINE MIR -6 256 1 422 250 52 0 chrX 32388532 32388648 -144585492 + MIR SINE MIR 113 234 -28 290 341 119 28 chrX 32390515 32390691 -144583449 + MIR SINE MIR 54 245 -17 2640 38 0 29 chrX 32390850 32391165 -144582975 + AluY SINE Alu 1 306 -5 216 257 169 59 chrX 32392123 32392259 -144581881 + MIR SINE MIR 46 196 -66 296 344 16 39 chrX 32392392 32392520 -144581620 + L2 LINE L2 3148 3272 0 216 0 0 0 chrX 32393760 32393784 -144580356 + (TCTCCC)n Simple_repeat Simple_repeat 6 29 0 8495 63 8 178 chrX 32393786 32395456 -144578684 + SVA Other Other 2 1386 0 549 314 51 0 chrX 32395630 32395805 -144578335 - LTR33 LTR ERVL -304 217 34 421 196 188 18 chrX 32397086 32397198 -144576942 + L2 LINE L2 3141 3271 -1 390 269 39 10 chrX 32397362 32397466 -144576674 - L2 LINE L2 -4 3309 3203 1368 82 6 11 chrX 32397591 32397774 -144576366 - THE1A LTR MaLR -173 182 1 689 128 0 0 chrX 32397774 32397876 -144576264 + L1MD3 LINE L1 7884 7985 -10 275 291 206 11 chrX 32397943 32398119 -144576021 + L1M4 LINE L1 4413 4553 -1593 387 0 0 0 chrX 32398119 32398162 -144575978 + (TG)n Simple_repeat Simple_repeat 2 44 0 275 291 206 11 chrX 32398162 32398339 -144575801 + L1M4 LINE L1 4553 4835 -1311 * 422 254 181 18 chrX 32398329 32398672 -144575468 + L1M4 LINE L1 2202 2600 -3546 2352 263 84 10 chrX 32400434 32401406 -144572734 + L1M4 LINE L1 2596 3639 -2507 895 228 101 25 chrX 32401405 32401642 -144572498 - L1MCc LINE L1 -5099 1323 1069 * 512 301 6 6 chrX 32401644 32401810 -144572330 - L1ME1 LINE L1 -2 6164 5999 * 2317 220 79 51 chrX 32401804 32402538 -144571602 - L1MCc LINE L1 -5321 1101 2 862 215 47 19 chrX 32402534 32402790 -144571350 + L1M4 LINE L1 3623 3885 -2261 * 180 0 0 0 chrX 32403619 32403639 -144570501 + (A)n Simple_repeat Simple_repeat 1 20 0 5402 113 12 46 chrX 32403838 32404644 -144569496 + LTR39 LTR ERV1 1 779 -4 787 333 107 24 chrX 32404908 32405377 -144568763 + L2 LINE L2 2120 2627 -687 4954 150 19 18 chrX 32405378 32406259 -144567881 + L1P LINE L1 4439 5320 -826 23 33 0 0 chrX 32406408 32406438 -144567702 + AT_rich Low_complexity Low_complexity 1 30 0 1119 217 237 84 chrX 32406606 32407011 -144567129 - MLT1D LTR MaLR 0 467 1 2239 94 37 0 chrX 32407825 32408124 -144566016 - AluSg SINE Alu 0 310 1 380 277 0 0 chrX 32408189 32408272 -144565868 + LTR16C LTR ERVL 409 491 0 1811 194 27 43 chrX 32408558 32408929 -144565211 - MLT1A1 LTR MaLR 0 365 1 922 231 61 78 chrX 32409308 32409668 -144564472 + MLT1J LTR MaLR 158 511 0 2035 186 16 32 chrX 32409886 32410262 -144563878 + MLT1A2 LTR MaLR 5 374 0 221 309 0 12 chrX 32410301 32410385 -144563755 - MIR3 SINE MIR -2 206 124 246 105 0 0 chrX 32410437 32410475 -144563665 + (TCCCC)n Simple_repeat Simple_repeat 1 38 0 2225 129 0 0 chrX 32410475 32410778 -144563362 - AluSx SINE Alu -9 303 1 24 67 0 0 chrX 32411929 32411974 -144562166 + AT_rich Low_complexity Low_complexity 1 45 0 266 237 0 0 chrX 32412363 32412422 -144561718 + MER103 DNA DNA 69 127 -39 259 264 83 74 chrX 32412453 32412574 -144561566 + MLT1G LTR MaLR 255 376 -214 313 259 185 29 chrX 32413027 32413194 -144560946 + L1M4 LINE L1 3214 3420 -2726 1878 169 127 8 chrX 32413194 32413548 -144560592 - MSTD LTR MaLR 0 396 1 313 259 185 29 chrX 32413548 32413585 -144560555 + L1M4 LINE L1 3420 3450 -2696 942 289 113 23 chrX 32413589 32414364 -144559776 + L1M4 LINE L1 3483 4327 -1819 1356 230 8 38 chrX 32414368 32414727 -144559413 + L1M4 LINE L1 4975 5322 -824 2149 115 3 0 chrX 32414727 32415023 -144559117 + AluSx SINE Alu 1 297 -15 1356 230 8 38 chrX 32415023 32415059 -144559081 + L1M4 LINE L1 5322 5358 -788 3425 179 0 5 chrX 32415161 32415775 -144558365 - L1P LINE L1 -1137 5009 4399 2054 177 75 10 chrX 32415981 32416383 -144557757 + MSTA LTR MaLR 1 428 0 5141 176 20 7 chrX 32416383 32417285 -144556855 + MSTA-int LTR MaLR 1 914 -737 311 154 0 31 chrX 32417275 32417340 -144556800 + L1PA13 LINE L1 3372 3434 -2712 * 8188 168 12 0 chrX 32417345 32419503 -144554637 + L1PA13 LINE L1 3988 6159 -4 2244 97 0 0 chrX 32419515 32419814 -144554326 + AluSg1 SINE Alu 1 299 -10 296 197 0 16 chrX 32419829 32419890 -144554250 + L1ME3A LINE L1 6015 6074 -96 27 0 0 0 chrX 32420057 32420084 -144554056 + AT_rich Low_complexity Low_complexity 1 27 0 581 287 17 11 chrX 32421093 32421274 -144552866 - MIR SINE MIR 0 262 81 195 339 108 38 chrX 32421275 32421591 -144552549 + L2 LINE L2 2637 2974 -340 377 303 35 14 chrX 32421741 32421883 -144552257 + L2 LINE L2 3165 3309 -4 821 238 31 35 chrX 32422950 32423177 -144550963 + MIR SINE MIR 34 259 -3 1044 237 93 35 chrX 32423634 32424158 -144549982 + MLT1G LTR MaLR 1 555 0 267 337 12 0 chrX 32425207 32425293 -144548847 - MIR SINE MIR -150 112 26 1709 188 3 13 chrX 32425453 32425756 -144548384 + AluJo SINE Alu 1 300 -12 1445 146 54 0 chrX 32426471 32426731 -144547409 - L1MB3 LINE L1 -220 5963 5690 5394 120 5 0 chrX 32427362 32428195 -144545945 - L1PA15 LINE L1 -7 6158 5322 963 143 6 56 chrX 32428196 32428357 -144545783 - AluSg/x SINE Alu -15 297 145 1948 156 0 7 chrX 32428365 32428667 -144545473 - AluSx SINE Alu -12 300 1 14254 205 10 24 chrX 32428667 32432222 -144541918 - L1MB3 LINE L1 -823 5323 1829 4482 199 44 43 chrX 32432229 32433327 -144540813 - L1PA13 LINE L1 -4586 2201 1103 3503 240 33 17 chrX 32433465 32434337 -144539803 - L1PA13 LINE L1 -5901 886 1 353 148 0 0 chrX 32434347 32434408 -144539732 - L1MA7 LINE L1 -46 6245 6185 298 143 0 63 chrX 32434623 32434686 -144539454 + MLT1B LTR MaLR 1 59 -331 231 36 0 0 chrX 32434791 32434819 -144539321 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 4748 171 51 24 chrX 32434819 32435607 -144538533 + Charlie1 DNA MER1_type 1650 2476 -285 2253 120 0 0 chrX 32435607 32435907 -144538233 - AluSg SINE Alu -10 300 1 4748 171 51 24 chrX 32435907 32436201 -144537939 + Charlie1 DNA MER1_type 2476 2761 0 200 360 40 20 chrX 32436219 32436319 -144537821 + MER5A DNA MER1_type 3 104 -85 252 299 102 24 chrX 32437942 32438069 -144536071 - MIR SINE MIR -61 201 65 491 333 88 31 chrX 32438358 32438676 -144535464 + MER102b DNA MER1_type 6 341 0 1769 177 34 0 chrX 32438985 32439279 -144534861 - AluJo SINE Alu -8 304 1 664 297 38 9 chrX 32439587 32439799 -144534341 - MIR SINE MIR 0 262 45 4437 105 142 95 chrX 32441667 32443085 -144531055 + pTR5 LTR ERV1 31 714 0 401 307 0 10 chrX 32443387 32443488 -144530652 - MIR SINE MIR -133 129 30 545 179 15 22 chrX 32445124 32445258 -144528882 + L1ME1 LINE L1 1986 2118 -4278 * 2473 250 33 18 chrX 32445254 32446191 -144527949 + L1ME1 LINE L1 3099 4049 -2166 1189 175 53 0 chrX 32446191 32446419 -144527721 - MSTA LTR MaLR 0 428 189 5076 88 0 10 chrX 32446443 32447174 -144526966 - L1PB1 LINE L1 -34 6117 5394 1001 105 66 7 chrX 32447174 32447326 -144526814 - THE1B LTR MaLR 0 364 204 5932 17 1 0 chrX 32447426 32448145 -144525995 - L1PA3 LINE L1 -153 6002 5283 3152 90 0 0 chrX 32448141 32448574 -144525566 - THE1B-int LTR MaLR -1147 433 1 * 848 125 8 0 chrX 32448574 32448702 -144525438 - THE1B LTR MaLR 0 364 236 312 157 0 0 chrX 32448711 32448762 -144525378 + MSTA LTR MaLR 378 428 0 1233 85 111 0 chrX 32448766 32448965 -144525175 + L1MA2 LINE L1 6084 6304 0 1974 203 24 7 chrX 32448981 32449504 -144524636 + L1ME1 LINE L1 5232 5761 -474 531 194 9 0 chrX 32449560 32449668 -144524472 + L1ME1 LINE L1 5734 5842 -393 14010 170 20 2 chrX 32449679 32452410 -144521730 + L1PA13 LINE L1 2246 5026 -1120 3490 100 23 18 chrX 32452411 32452979 -144521161 + L1PA13 LINE L1 5585 6155 -8 783 248 45 41 chrX 32453000 32453383 -144520757 + L1ME1 LINE L1 5863 6403 0 1846 230 81 4 chrX 32453385 32453906 -144520234 + L1ME1 LINE L1 5596 6156 -10 2319 73 17 0 chrX 32454075 32454362 -144519778 - AluY SINE Alu -19 292 1 413 234 156 7 chrX 32454410 32454551 -144519589 + MIR SINE MIR 47 208 -54 3550 209 115 101 chrX 32455823 32456261 -144517879 - L1MD3 LINE L1 -147 7848 7417 504 184 19 10 chrX 32456261 32456364 -144517776 - MLT1F1 LTR MaLR -442 125 22 3550 209 115 101 chrX 32456364 32457346 -144516794 - L1MD3 LINE L1 -578 7417 6302 9268 191 26 14 chrX 32457348 32459699 -144514441 + L1PA16 LINE L1 2951 5343 -823 3384 47 0 2 chrX 32459699 32460108 -144514032 + L1PA6 LINE L1 5736 6143 -11 9268 191 26 14 chrX 32460108 32460932 -144513208 + L1PA16 LINE L1 5343 6156 -10 22 0 0 0 chrX 32460932 32460954 -144513186 + AT_rich Low_complexity Low_complexity 1 22 0 2988 213 23 4 chrX 32461027 32461760 -144512380 - L1ME1 LINE L1 -18 6148 5402 1835 111 62 0 chrX 32461860 32462149 -144511991 - LTR26 LTR ERV1 -296 307 1 907 226 16 3 chrX 32462152 32462468 -144511672 - L1ME1 LINE L1 -718 5444 5127 1015 224 63 72 chrX 32462900 32463254 -144510886 - MER39 LTR ERV1 0 707 144 2820 207 2 53 chrX 32463254 32463838 -144510302 + MLT2B3 LTR ERVL 1 554 0 1015 224 63 72 chrX 32463838 32463981 -144510159 - MER39 LTR ERV1 -563 144 1 210 320 134 52 chrX 32464049 32464221 -144509919 - L2 LINE L2 -510 2804 2619 21 36 0 0 chrX 32464239 32464267 -144509873 + AT_rich Low_complexity Low_complexity 1 28 0 453 332 128 24 chrX 32464580 32464878 -144509262 - L2 LINE L2 -846 2468 2140 786 297 56 54 chrX 32464887 32465705 -144508435 - L1ME1 LINE L1 -1227 4919 4100 7559 198 43 31 chrX 32465707 32469023 -144505117 + L1MC1 LINE L1 886 4149 -2464 969 132 0 0 chrX 32469023 32469175 -144504965 + L1MA2 LINE L1 6153 6304 0 7559 198 43 31 chrX 32469175 32471664 -144502476 + L1MC1 LINE L1 4149 6608 -5 230 0 0 32 chrX 32471942 32471973 -144502167 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 36644 48 1 3 chrX 32471973 32474507 -144499633 - L1PA4 LINE L1 -16 6139 3602 2397 94 0 0 chrX 32474507 32474816 -144499324 - AluY SINE Alu -2 309 1 36644 48 1 3 chrX 32474816 32478381 -144495759 - L1PA4 LINE L1 -2553 3602 41 1958 190 226 4 chrX 32479676 32480207 -144493933 + MLT1E1 LTR MaLR 6 654 0 331 309 147 10 chrX 32480243 32480447 -144493693 - L1M4 LINE L1 -2406 5159 4928 2931 83 6 28 chrX 32480542 32481009 -144493131 - L1PA8 LINE L1 -895 5251 4795 7086 48 15 3 chrX 32481009 32481912 -144492228 + L1PA8 LINE L1 5254 6171 -1 411 205 177 76 chrX 32482026 32482275 -144491865 - L1M4 LINE L1 -2749 4816 4543 1464 248 165 55 chrX 32482314 32482333 -144491807 - HAL1 LINE L1 -1 2506 2490 252 59 0 0 chrX 32482333 32482367 -144491773 + (TG)n Simple_repeat Simple_repeat 1 34 0 1464 248 165 55 chrX 32482367 32483700 -144490440 - HAL1 LINE L1 -17 2490 1006 697 270 28 33 chrX 32483825 32484217 -144489923 - L1M4 LINE L1 -3096 4469 4080 3731 188 67 1 chrX 32484333 32485037 -144489103 - MER21B LTR ERV1 -113 750 1 350 324 128 25 chrX 32485039 32485320 -144488820 - L1M4 LINE L1 -3539 4026 3717 1909 131 20 18 chrX 32485322 32485665 -144488475 - L1MA2 LINE L1 0 6304 5961 5147 91 26 8 chrX 32485677 32486454 -144487686 - L1PA13 LINE L1 -3 6160 5370 949 159 19 0 chrX 32486455 32486612 -144487528 - LTR10D LTR ERV1 0 513 354 2900 249 83 53 chrX 32486617 32486943 -144487197 - L1M4 LINE L1 -6216 1349 1034 2067 149 79 30 chrX 32486943 32487372 -144486768 + LTR7 LTR ERV1 1 450 0 2900 249 83 53 chrX 32487372 32488338 -144485802 - L1M4 LINE L1 -6531 1034 19 22 0 0 0 chrX 32488717 32488739 -144485401 + AT_rich Low_complexity Low_complexity 1 22 0 1166 256 114 77 chrX 32488758 32490714 -144483426 - L1MC5 LINE L1 -673 7288 5265 352 304 77 24 chrX 32490749 32491072 -144483068 - L1MC5 LINE L1 -978 5168 4805 2130 139 0 0 chrX 32491072 32491373 -144482767 - AluSx SINE Alu -11 301 1 352 304 77 24 chrX 32491373 32491582 -144482558 - L1MC5 LINE L1 -1341 4805 4608 562 340 84 15 chrX 32491835 32492167 -144481973 - HAL1 LINE L1 -868 1639 1285 4862 104 22 16 chrX 32492172 32492960 -144481180 - L1PA16 LINE L1 -9 6157 5366 2537 216 10 2 chrX 32492962 32493565 -144480575 + L1 LINE L1 4084 4691 -1455 1594 181 3 20 chrX 32493574 32493867 -144480273 - AluJo SINE Alu -23 289 2 1202 145 0 0 chrX 32494165 32494337 -144479803 - AluJb SINE Alu -14 298 127 36171 85 5 10 chrX 32494486 32500662 -144473478 - L1PA6 LINE L1 0 6154 11 253 353 43 0 chrX 32501426 32501542 -144472598 - LTR67 LTR ERVL -336 221 101 2200 108 3 0 chrX 32502593 32502881 -144471259 - AluSc SINE Alu -20 289 1 1751 162 3 34 chrX 32502888 32503185 -144470955 - AluJo SINE Alu -20 292 5 25 0 0 0 chrX 32503980 32504005 -144470135 + AT_rich Low_complexity Low_complexity 1 25 0 2391 189 79 20 chrX 32504711 32505303 -144468837 - L1MD2 LINE L1 -311 6048 5422 2363 101 41 103 chrX 32505407 32505871 -144468269 - L1MC1 LINE L1 0 6333 5899 3847 150 32 10 chrX 32505871 32506749 -144467391 + L1MC1 LINE L1 5341 6053 -280 31191 101 8 53 chrX 32506760 32513205 -144460935 + L1PA7 LINE L1 12 6154 0 1256 145 27 8 chrX 32513201 32513659 -144460481 + L1MC2 LINE L1 5725 6343 -1 * 1844 208 66 43 chrX 32513659 32514192 -144459948 + L1ME1 LINE L1 5603 6147 -19 439 311 12 0 chrX 32514783 32514944 -144459196 + (CA)n Simple_repeat Simple_repeat 2 164 0 1428 142 0 9 chrX 32515028 32515240 -144458900 + AluJo SINE Alu 86 295 -17 228 164 73 36 chrX 32515276 32515331 -144458809 + L1MB5 LINE L1 5416 5472 -698 2698 159 26 48 chrX 32515332 32515897 -144458243 + L1MB5 LINE L1 5622 6174 0 970 196 58 4 chrX 32515900 32516140 -144458000 - L1MDa LINE L1 -4654 1886 1634 1528 151 72 7 chrX 32516142 32516446 -144457694 - L1MC3 LINE L1 -1 7784 7461 1353 201 115 42 chrX 32516607 32516870 -144457270 - L1MDa LINE L1 -4898 1642 1399 3431 67 11 39 chrX 32516870 32517271 -144456869 + MLT2A2 LTR ERVL 1 389 -64 267 54 0 0 chrX 32517271 32517308 -144456832 + (TG)n Simple_repeat Simple_repeat 2 38 0 3431 67 11 39 chrX 32517308 32517372 -144456768 + MLT2A2 LTR ERVL 389 453 0 1353 201 115 42 chrX 32517372 32517675 -144456465 - L1MDa LINE L1 -5141 1399 1035 622 264 47 99 chrX 32518472 32518896 -144455244 - L1MDa LINE L1 -6083 457 56 2085 229 52 6 chrX 32518929 32519580 -144454560 - L1M4 LINE L1 -3173 2973 2293 6570 77 4 40 chrX 32519581 32521236 -144452904 - L1PA13 LINE L1 -4 6159 4533 456 87 0 14 chrX 32521236 32521296 -144452844 - L1PA10 LINE L1 -6 6162 6095 10774 161 21 4 chrX 32521306 32523793 -144450347 - L1P4 LINE L1 -702 5781 3210 * 29774 49 3 3 chrX 32523792 32529940 -144444200 + L1PA4 LINE L1 1 6150 -5 10220 200 13 50 chrX 32529945 32531618 -144442522 - L1P4 LINE L1 -3241 3220 1492 2301 128 14 8 chrX 32531618 32531971 -144442169 - THE1A LTR MaLR 0 355 1 10220 200 13 50 chrX 32531971 32533407 -144440733 - L1P4 LINE L1 -4969 1492 4 * 16444 172 3 12 chrX 32533396 32536476 -144437664 - L1PA13 LINE L1 -1588 5209 2159 290 100 0 20 chrX 32536482 32536532 -144437608 + MADE1 DNA Mariner 1 49 -31 7395 218 151 7 chrX 32536532 32538201 -144435939 - L1PA13 LINE L1 -4878 1909 1 877 260 50 44 chrX 32538206 32538709 -144435431 - L1MEc LINE L1 -3984 3154 2649 1856 198 59 3 chrX 32538712 32539085 -144435055 + MER93a LTR ERV1 1 394 -8 619 248 14 38 chrX 32539157 32539367 -144434773 - L1MEc LINE L1 -5443 1416 1212 21 36 0 0 chrX 32539381 32539409 -144434731 + AT_rich Low_complexity Low_complexity 1 28 0 748 280 48 53 chrX 32539452 32539845 -144434295 - L1MEc LINE L1 -5668 1187 797 491 257 187 14 chrX 32539936 32540150 -144433990 - L1MEc LINE L1 -6598 261 11 356 304 146 13 chrX 32541170 32541328 -144432812 + MER5A DNA MER1_type 11 189 0 3094 173 53 53 chrX 32541495 32542235 -144431905 - L1MB7 LINE L1 -16 6666 5927 868 150 0 0 chrX 32542235 32542362 -144431778 - AluJb SINE Alu -185 127 1 2933 203 58 3 chrX 32542362 32542993 -144431147 - L1MB7 LINE L1 -735 5937 5261 724 80 18 0 chrX 32542993 32543106 -144431034 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 2933 203 58 3 chrX 32543106 32543249 -144430891 - L1MB7 LINE L1 -1411 5261 5127 * 3507 233 10 33 chrX 32543248 32544214 -144429926 - L1MB7 LINE L1 -1916 4728 3785 5996 225 50 41 chrX 32544250 32545940 -144428200 - L1MB7 LINE L1 -4833 1709 5 2120 106 3 0 chrX 32546821 32547141 -144426999 - AluSp SINE Alu 0 321 1 37 69 0 0 chrX 32547198 32547270 -144426870 + AT_rich Low_complexity Low_complexity 1 72 0 289 306 70 36 chrX 32547319 32547649 -144426491 - L1M4 LINE L1 -3161 2985 2636 980 263 26 46 chrX 32547884 32548250 -144425890 - MLT1I LTR MaLR -7 402 5 1667 198 24 18 chrX 32549734 32550072 -144424068 + MER58B DNA MER1_type 2 341 0 696 315 4 37 chrX 32550264 32550505 -144423635 + LTR16C LTR ERVL 36 268 -223 249 108 0 0 chrX 32550513 32550550 -144423590 + (T)n Simple_repeat Simple_repeat 1 37 0 784 263 33 19 chrX 32550550 32550763 -144423377 + LTR16C LTR ERVL 276 491 0 242 248 51 51 chrX 32551124 32551241 -144422899 + L3b LINE CR1 1288 1404 -179 252 308 29 39 chrX 32551275 32551379 -144422761 + MIR SINE MIR 23 125 -137 386 190 0 0 chrX 32551479 32551558 -144422582 - L1MA3 LINE L1 0 6305 6227 24 0 0 0 chrX 32552052 32552076 -144422064 + AT_rich Low_complexity Low_complexity 1 24 0 464 183 167 32 chrX 32552448 32552574 -144421566 - L2 LINE L2 -1 3312 3170 1242 270 98 29 chrX 32552714 32553330 -144420810 - L2 LINE L2 -178 3135 2476 2284 227 99 4 chrX 32553332 32553848 -144420292 - MER69 DNA AcHobo -661 565 1 443 272 201 21 chrX 32553857 32554136 -144420004 - L2 LINE L2 -1206 2108 1780 3252 50 21 5 chrX 32554334 32554756 -144419384 + L1PA8 LINE L1 5741 6169 -3 2339 135 3 13 chrX 32555544 32555921 -144418219 - L1PB4 LINE L1 -3 6153 5781 419 215 8 0 chrX 32555921 32556042 -144418098 + (TA)n Simple_repeat Simple_repeat 2 123 0 288 111 0 111 chrX 32556042 32556105 -144418035 - L1M3 LINE L1 -364 5792 5741 261 350 158 19 chrX 32556321 32556581 -144417559 + L2 LINE L2 2928 3223 -49 342 305 102 0 chrX 32556755 32556873 -144417267 - L2 LINE L2 0 3313 3184 1094 276 147 25 chrX 32557032 32557740 -144416400 - L2 LINE L2 -144 3169 2366 482 262 138 0 chrX 32557778 32557923 -144416217 - L2 LINE L2 -1633 1681 1517 385 293 26 69 chrX 32558248 32558364 -144415776 - MIR SINE MIR -64 144 34 200 216 0 0 chrX 32558801 32558838 -144415302 + CT-rich Low_complexity Low_complexity 3 39 0 225 94 0 0 chrX 32559265 32559297 -144414843 + (GGAGA)n Simple_repeat Simple_repeat 3 34 0 6277 158 68 41 chrX 32559403 32560734 -144413406 - Charlie1a DNA MER1_type -2 1453 88 13960 123 14 1 chrX 32560762 32562828 -144411312 + Tigger1 DNA MER2_type 2 2093 -325 7720 136 8 7 chrX 32562829 32565165 -144408975 + L1MA1 LINE L1 3958 6298 -4 2182 125 20 15 chrX 32565175 32565518 -144408622 + Tigger1 DNA MER2_type 2073 2417 -1 30 59 0 0 chrX 32565660 32565711 -144408429 + AT_rich Low_complexity Low_complexity 1 51 0 3757 227 61 27 chrX 32565738 32566361 -144407779 - L1MD1 LINE L1 0 6636 6035 1734 181 0 26 chrX 32566361 32566671 -144407469 - AluJo SINE Alu -10 302 1 3757 227 61 27 chrX 32566671 32566864 -144407276 - L1MD1 LINE L1 -601 6035 5850 475 32 0 0 chrX 32566864 32566926 -144407214 + L1PA2 LINE L1 6090 6151 -4 3757 227 61 27 chrX 32566926 32566959 -144407181 - L1MD1 LINE L1 -786 5850 5820 189 0 0 0 chrX 32566959 32566980 -144407160 + (TAA)n Simple_repeat Simple_repeat 2 22 0 3757 227 61 27 chrX 32566980 32567227 -144406913 - L1MD1 LINE L1 -816 5820 5583 243 0 0 0 chrX 32567227 32567254 -144406886 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3757 227 61 27 chrX 32567254 32569816 -144404324 - L1MD1 LINE L1 -1053 5583 2654 1197 246 72 25 chrX 32569816 32570177 -144403963 - MLT1C LTR MaLR -2 465 88 5880 223 89 87 chrX 32570180 32571493 -144402647 - L1MD1 LINE L1 -3875 2665 1357 2427 90 3 0 chrX 32571493 32571805 -144402335 - AluSq SINE Alu 0 313 1 5880 223 89 87 chrX 32571805 32572099 -144402041 - L1MD1 LINE L1 -5183 1357 1065 1805 171 3 10 chrX 32572099 32572398 -144401742 + AluJo SINE Alu 1 297 -15 5880 223 89 87 chrX 32572398 32573376 -144400764 - L1MD1 LINE L1 -5475 1065 76 1007 204 36 14 chrX 32573532 32573753 -144400387 - L1ME3A LINE L1 -8 6162 5937 355 212 40 20 chrX 32573772 32573871 -144400269 - L1ME3A LINE L1 -328 5842 5742 261 89 71 54 chrX 32573876 32573932 -144400208 - MLT2B3 LTR ERVL 0 515 459 1163 240 73 67 chrX 32573952 32574474 -144399666 - MLT2B3 LTR ERVL -39 515 1 1292 259 33 35 chrX 32574474 32575134 -144399006 - L1ME3A LINE L1 -429 5741 5084 742 196 159 0 chrX 32577312 32577475 -144396665 + MER5A DNA MER1_type 1 189 0 237 376 39 0 chrX 32577568 32577684 -144396456 + MIR SINE MIR 14 143 -68 1080 274 84 23 chrX 32579192 32579749 -144394391 - L1MC4a LINE L1 -127 5994 5402 2223 107 0 0 chrX 32580032 32580340 -144393800 + AluSx SINE Alu 1 308 -4 210 37 0 0 chrX 32580457 32580484 -144393656 + (CAA)n Simple_repeat Simple_repeat 1 27 0 414 69 0 0 chrX 32581138 32581196 -144392944 + (CA)n Simple_repeat Simple_repeat 1 58 0 2119 188 14 2 chrX 32582175 32582589 -144391551 - MER63B DNA MER1_type -13 423 5 3974 289 59 18 chrX 32582829 32584381 -144389759 - HERV16 LTR ERVL -1905 3091 1646 1166 248 44 16 chrX 32584768 32585430 -144388710 - HERV16 LTR ERVL -3859 1137 346 926 235 52 0 chrX 32585455 32585685 -144388455 - HERV16 LTR ERVL -4754 242 1 1296 282 78 24 chrX 32585685 32586096 -144388044 - LTR16A LTR ERVL 0 450 18 227 316 0 0 chrX 32586228 32586285 -144387855 - Tigger7 DNA MER2_type -260 79 23 * 294 211 14 0 chrX 32586281 32586352 -144387788 - MER116 DNA Mariner -8 72 1 582 128 0 0 chrX 32586521 32586607 -144387533 + AluSg/x SINE Alu 216 301 -11 446 299 103 17 chrX 32587349 32587466 -144386674 + L2 LINE L2 3137 3263 -9 255 79 0 0 chrX 32588082 32588120 -144386020 + (TG)n Simple_repeat Simple_repeat 2 39 0 986 223 193 3 chrX 32588232 32588532 -144385608 - MLT1G1 LTR MaLR -6 589 233 2121 94 21 3 chrX 32588704 32588991 -144385149 + AluSc SINE Alu 1 292 -17 309 280 10 0 chrX 32589075 32589235 -144384905 + (TG)n Simple_repeat Simple_repeat 1 161 0 2374 81 0 0 chrX 32589287 32589582 -144384558 - AluSc SINE Alu -14 295 1 3247 231 41 24 chrX 32590129 32590382 -144383758 - L1ME1 LINE L1 -19 6147 5900 2185 115 30 33 chrX 32590382 32590747 -144383393 - THE1B LTR MaLR 0 364 1 12087 81 2 7 chrX 32590747 32592334 -144381806 - THE1B-int LTR MaLR 0 1580 1 2136 130 19 35 chrX 32592334 32592704 -144381436 - THE1B LTR MaLR 0 364 1 3247 231 41 24 chrX 32592704 32593450 -144380690 - L1ME1 LINE L1 -265 5901 5129 33 0 0 0 chrX 32593450 32593483 -144380657 + AT_rich Low_complexity Low_complexity 1 33 0 14642 207 8 14 chrX 32593483 32598259 -144375881 - L1PB1 LINE L1 0 6867 2048 4520 122 39 0 chrX 32599296 32600433 -144373707 - L1PB1 LINE L1 -4814 2049 634 1120 157 5 0 chrX 32600433 32600630 -144373510 - L1PB1 LINE L1 -6663 200 3 1995 226 87 4 chrX 32600639 32601319 -144372821 - L1M4 LINE L1 -1011 5135 4400 1505 101 18 0 chrX 32601327 32601555 -144372585 - L1MA6 LINE L1 0 6300 6069 2526 117 9 41 chrX 32601556 32601898 -144372242 + L1MA6 LINE L1 5625 5952 -348 2155 113 7 0 chrX 32601898 32602191 -144371949 + AluSq SINE Alu 1 295 -18 2526 117 9 41 chrX 32602191 32602285 -144371855 + L1MA6 LINE L1 5952 6047 -253 236 291 10 0 chrX 32602335 32602438 -144371702 - L1M4 LINE L1 -1786 4360 4257 335 299 48 21 chrX 32602503 32602903 -144371237 - L1MDa LINE L1 -4436 1693 1330 411 279 103 20 chrX 32602954 32603255 -144370885 - L1MDa LINE L1 -4887 1232 907 444 382 27 35 chrX 32603276 32603650 -144370490 - L1MDa LINE L1 -5212 907 537 324 315 88 42 chrX 32603843 32604059 -144370081 - L1MDa LINE L1 -5887 232 7 23 54 0 0 chrX 32605044 32605081 -144369059 + AT_rich Low_complexity Low_complexity 1 37 0 350 288 24 0 chrX 32605323 32605448 -144368692 + MER103 DNA DNA 11 138 -28 420 267 76 9 chrX 32605653 32605758 -144368382 - MIR SINE MIR -134 128 17 308 281 37 0 chrX 32606592 32606674 -144367466 - L2 LINE L2 0 3313 3229 3518 63 2 2 chrX 32606674 32607136 -144367004 + HERV17 LTR ERV1 3293 3754 -4872 * 14021 45 1 0 chrX 32607115 32608857 -144365283 + HERV17 LTR ERV1 5405 7147 -1479 304 26 0 0 chrX 32608853 32608892 -144365248 + HERV17 LTR ERV1 7510 7548 -1078 * 2104 60 3 27 chrX 32608882 32609181 -144364959 + HERV17 LTR ERV1 8335 8626 0 2125 100 3 12 chrX 32609181 32609510 -144364630 + LTR17 LTR ERV1 1 326 -454 217 238 159 0 chrX 32609523 32609586 -144364554 - L2 LINE L2 -61 3252 3180 789 299 100 0 chrX 32609812 32610093 -144364047 - L2 LINE L2 -182 3131 2823 635 194 9 0 chrX 32610345 32610560 -144363580 + CT-rich Low_complexity Low_complexity 1 216 0 820 163 7 0 chrX 32610563 32610731 -144363409 - FRAM SINE Alu 0 176 35 616 266 21 31 chrX 32611148 32611340 -144362800 + L2 LINE L2 2679 2868 -446 1112 291 71 3 chrX 32611383 32611775 -144362365 - LTR16A LTR ERVL 0 450 32 2112 122 72 76 chrX 32611775 32612235 -144361905 + MLT1C LTR MaLR 1 458 -9 215 271 120 90 chrX 32612424 32612557 -144361583 + L2 LINE L2 3136 3272 0 268 296 31 41 chrX 32613095 32613193 -144360947 + MIR SINE MIR 34 130 -132 294 186 0 51 chrX 32613624 32613683 -144360457 + L2 LINE L2 3201 3256 -16 1503 282 67 14 chrX 32613782 32614289 -144359851 + L1ME1 LINE L1 36 569 -5827 2145 153 20 112 chrX 32614293 32614837 -144359303 + MLT1D LTR MaLR 2 495 -10 264 203 243 10 chrX 32614956 32615046 -144359094 + L1ME1 LINE L1 4349 4417 -1798 2285 105 3 0 chrX 32615046 32615342 -144358798 + AluSq SINE Alu 1 297 -16 264 203 243 10 chrX 32615342 32615453 -144358687 + L1ME1 LINE L1 4417 4597 -1618 1101 195 22 19 chrX 32615464 32615488 -144358652 + L1ME1 LINE L1 5355 5377 -854 1737 153 27 27 chrX 32615488 32615789 -144358351 + AluJo SINE Alu 1 301 -11 1101 195 22 19 chrX 32615789 32616032 -144358108 + L1ME1 LINE L1 5377 5622 -609 257 193 0 0 chrX 32616035 32616092 -144358048 + LTR28 LTR ERV1 1 57 -963 * 2239 146 54 0 chrX 32616064 32616454 -144357686 + MER61C LTR ERV1 14 424 -10 1572 203 30 16 chrX 32616466 32616830 -144357310 + L1ME1 LINE L1 5620 5988 -247 327 159 127 0 chrX 32616831 32616894 -144357246 + LTR26 LTR ERV1 250 320 -283 1918 122 16 22 chrX 32616920 32617232 -144356908 + LTR26 LTR ERV1 291 600 -3 1208 232 70 55 chrX 32617253 32617693 -144356447 + L1ME3A LINE L1 5455 5901 -269 280 250 33 117 chrX 32617799 32617979 -144356161 + L1ME3A LINE L1 5962 6126 -44 1899 167 3 3 chrX 32618022 32618315 -144355825 + AluJb SINE Alu 1 293 -19 385 273 83 25 chrX 32618320 32618441 -144355699 - MER5B DNA MER1_type -50 128 1 182 241 147 60 chrX 32618565 32618681 -144355459 + L2 LINE L2 3144 3269 -44 2144 123 128 10 chrX 32618818 32619201 -144354939 + MSTA LTR MaLR 1 428 0 1525 172 81 47 chrX 32620254 32620301 -144353839 + LTR37A LTR ERV1 1 45 -381 1168 204 0 5 chrX 32620301 32620522 -144353618 - MER58A DNA MER1_type -1 223 4 1525 172 81 47 chrX 32620522 32620741 -144353399 + LTR37A LTR ERV1 45 288 -138 504 86 0 0 chrX 32620741 32620811 -144353329 + (TA)n Simple_repeat Simple_repeat 2 71 0 1525 172 81 47 chrX 32620811 32620949 -144353191 + LTR37A LTR ERV1 288 420 -6 193 275 0 75 chrX 32620997 32621077 -144353063 + L2 LINE L2 3167 3240 -73 198 299 61 76 chrX 32621451 32621648 -144352492 - MIR SINE MIR -46 216 23 392 253 0 0 chrX 32621958 32622053 -144352087 + L1MB8 LINE L1 5668 5762 -416 1178 152 25 12 chrX 32622109 32622352 -144351788 + L1MB8 LINE L1 5924 6169 -9 21 0 0 0 chrX 32622458 32622479 -144351661 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 32623329 32623351 -144350789 + AT_rich Low_complexity Low_complexity 1 22 0 439 175 79 0 chrX 32624048 32624162 -144349978 + MER103 DNA DNA 40 162 -4 1702 180 0 14 chrX 32624568 32624863 -144349277 - AluJo SINE Alu -21 291 1 2047 127 3 0 chrX 32624982 32625282 -144348858 - AluJb SINE Alu -9 303 3 375 78 0 0 chrX 32625376 32625427 -144348713 + (TCCCC)n Simple_repeat Simple_repeat 2 52 0 2169 116 0 0 chrX 32625427 32625730 -144348410 - AluY SINE Alu -8 303 1 241 298 0 24 chrX 32626093 32626177 -144347963 + CT-rich Low_complexity Low_complexity 3 84 0 384 309 60 39 chrX 32626277 32626510 -144347630 - L3 LINE CR1 -660 917 680 21 0 0 0 chrX 32627532 32627553 -144346587 + AT_rich Low_complexity Low_complexity 1 21 0 970 287 14 3 chrX 32627685 32627993 -144346147 + L2 LINE L2 2738 3048 -265 3397 55 2 73 chrX 32628003 32628510 -144345630 - L1PA8 LINE L1 -16 6156 5686 250 29 0 0 chrX 32628516 32628551 -144345589 + L1PA8 LINE L1 5644 5678 -494 2141 128 0 0 chrX 32628598 32628902 -144345238 - AluSc SINE Alu -5 304 1 210 191 0 0 chrX 32630182 32630224 -144343916 + (CATA)n Simple_repeat Simple_repeat 1 42 0 278 214 333 0 chrX 32630458 32630542 -144343598 + MER5B DNA MER1_type 67 178 0 1139 176 11 0 chrX 32630642 32630829 -144343311 - MER5A DNA MER1_type 0 189 1 536 251 40 6 chrX 32630885 32631060 -144343080 + L1M4 LINE L1 3788 3968 -2178 * 3193 224 33 16 chrX 32631059 32632328 -144341812 - L1M4c LINE L1 -3069 3575 2287 202 94 0 31 chrX 32634197 32634229 -144339911 + (TTC)n Simple_repeat Simple_repeat 3 33 0 6236 207 46 43 chrX 32634230 32634251 -144339889 - L1M4c LINE L1 -4657 2168 2149 873 129 8 0 chrX 32634251 32634383 -144339757 - FLAM_C SINE Alu 0 133 1 6236 207 46 43 chrX 32634383 32634955 -144339185 - L1M4c LINE L1 -4676 2149 1581 2237 87 3 6 chrX 32634955 32635266 -144338874 - L1PA11 LINE L1 0 6174 5865 6236 207 46 43 chrX 32635266 32636645 -144337495 - L1M4c LINE L1 -5244 1581 1 351 44 0 0 chrX 32637437 32637482 -144336658 + (TG)n Simple_repeat Simple_repeat 2 46 0 245 158 32 179 chrX 32638367 32638462 -144335678 - L2 LINE L2 -6 3307 3227 2199 113 14 0 chrX 32638920 32639213 -144334927 + AluSx SINE Alu 1 297 -15 239 130 0 22 chrX 32639373 32639419 -144334721 + (TTTTC)n Simple_repeat Simple_repeat 1 45 0 1399 228 75 61 chrX 32639426 32640004 -144334136 - L2 LINE L2 -1 3312 2713 196 280 0 20 chrX 32640385 32640435 -144333705 + L2 LINE L2 3182 3230 -83 736 265 63 5 chrX 32640619 32640842 -144333298 + MER97c DNA MER1_type? 2 237 -853 5083 230 3 11 chrX 32640873 32642981 -144331159 + L1PA13 LINE L1 1 2444 -4353 2394 106 3 0 chrX 32642981 32643292 -144330848 + AluSp SINE Alu 2 313 0 5083 230 3 11 chrX 32643292 32644428 -144329712 + L1PA13 LINE L1 2444 3587 -3210 2334 132 3 0 chrX 32644457 32644813 -144329327 + L1PA15 LINE L1 5805 6161 -4 9979 220 35 30 chrX 32644856 32646294 -144327846 - L1M3 LINE L1 -516 6627 5198 2081 90 52 10 chrX 32646294 32646583 -144327557 - AluY SINE Alu -10 301 1 1866 149 7 4 chrX 32646589 32646870 -144327270 - AluJb SINE Alu -20 292 11 9979 220 35 30 chrX 32646870 32648732 -144325408 - L1M3 LINE L1 -1949 5194 3183 2255 131 0 3 chrX 32648732 32649044 -144325096 - AluSx SINE Alu -1 311 1 9979 220 35 30 chrX 32649044 32650177 -144323963 - L1M3 LINE L1 -3960 3183 2058 278 256 16 31 chrX 32650275 32650404 -144323736 - L1M3 LINE L1 -6903 127 1 566 224 14 0 chrX 32650459 32650602 -144323538 - L1MD2 LINE L1 -13 6346 6202 2255 101 0 0 chrX 32650626 32650913 -144323227 + AluSg SINE Alu 1 287 -23 806 181 62 39 chrX 32651422 32651682 -144322458 - MER20B DNA MER1_type -3 780 515 1078 285 133 6 chrX 32651784 32652250 -144321890 - MER20B DNA MER1_type -256 527 3 744 331 167 34 chrX 32652472 32652974 -144321166 - L2 LINE L2 -359 2955 2387 2210 130 0 0 chrX 32653101 32653408 -144320732 + AluSx SINE Alu 1 307 -5 566 301 83 5 chrX 32655405 32655621 -144318519 - MIR SINE MIR -15 247 15 399 292 19 32 chrX 32656213 32656429 -144317711 - L1MEd LINE L1 -4923 1196 984 * 1187 115 5 55 chrX 32656428 32656645 -144317495 + L1P5 LINE L1 5521 5726 -428 277 318 38 15 chrX 32656637 32656769 -144317371 - L1MEd LINE L1 -5422 697 563 * 303 340 30 0 chrX 32657035 32657135 -144317005 - L1MEd LINE L1 -5928 191 89 6145 95 6 7 chrX 32657706 32658889 -144315251 + L1PB1 LINE L1 4991 6172 0 29 78 0 0 chrX 32659012 32659076 -144315064 + AT_rich Low_complexity Low_complexity 1 64 0 260 298 84 8 chrX 32659509 32659640 -144314500 + L2 LINE L2 1281 1421 -1893 462 194 0 11 chrX 32659718 32659811 -144314329 - L1MC5 LINE L1 -60 7901 7810 2403 136 84 16 chrX 32659881 32660309 -144313831 - MSTB2 LTR MaLR 0 457 1 26 0 0 0 chrX 32660436 32660462 -144313678 + AT_rich Low_complexity Low_complexity 1 26 0 607 295 102 57 chrX 32660490 32660978 -144313162 + L2 LINE L2 1713 2222 -1092 357 314 92 7 chrX 32661942 32662095 -144312045 - MIR SINE MIR -93 169 4 1861 155 10 33 chrX 32662131 32662434 -144311706 - AluJb SINE Alu -7 305 10 835 189 127 50 chrX 32662586 32662846 -144311294 - MLT1G LTR MaLR 0 590 311 350 125 12 0 chrX 32662856 32662936 -144311204 + (TC)n Simple_repeat Simple_repeat 1 81 0 294 188 114 100 chrX 32662959 32663109 -144311031 - MLT1F1 LTR MaLR -365 225 72 311 276 103 0 chrX 32663353 32663440 -144310700 + L2 LINE L2 3208 3303 -10 848 253 112 23 chrX 32663698 32664168 -144309972 + MLT1G1 LTR MaLR 10 546 -9 391 362 9 0 chrX 32664440 32664556 -144309584 + MER5A DNA MER1_type 69 185 -4 3303 104 10 0 chrX 32664585 32665087 -144309053 + L1PA16 LINE L1 5467 5973 -193 698 222 45 17 chrX 32666942 32667118 -144307022 + MIR SINE MIR 79 259 -3 273 244 33 67 chrX 32667282 32667372 -144306768 + L2 LINE L2 3225 3311 -2 794 147 28 0 chrX 32667549 32667692 -144306448 - L1MA9 LINE L1 -5 6307 6161 718 224 217 41 chrX 32668753 32669172 -144304968 - MLT1H LTR MaLR -3 546 12 455 324 22 32 chrX 32669248 32669433 -144304707 + MIR3 SINE MIR 3 185 -23 528 314 168 8 chrX 32670108 32670471 -144303669 + L2 LINE L2 1931 2351 -963 2543 295 58 11 chrX 32670750 32671857 -144302283 + ERVL LTR ERVL 4179 5396 -368 277 292 56 49 chrX 32672192 32672336 -144301804 + LTR33A LTR ERVL 7 151 -372 396 250 45 8 chrX 32672477 32672609 -144301531 + LTR33A LTR ERVL 331 467 -56 2569 130 23 30 chrX 32672857 32673294 -144300846 - Tigger2a DNA MER2_type 0 434 1 23 0 0 0 chrX 32673575 32673598 -144300542 + AT_rich Low_complexity Low_complexity 1 23 0 9274 136 30 4 chrX 32673602 32676281 -144297859 - L1MA2 LINE L1 0 7723 4969 4495 200 23 7 chrX 32676276 32677603 -144296537 - L1MA2 LINE L1 -2833 4732 3380 * 5621 171 40 23 chrX 32677603 32678731 -144295409 - L1MA2 LINE L1 -6397 1168 22 4639 178 45 37 chrX 32678902 32680096 -144294044 - L1MD2 LINE L1 -3 6750 5546 * 39743 64 0 3 chrX 32680093 32686263 -144287877 - L1PA5 LINE L1 0 6154 1 10069 220 45 27 chrX 32686262 32686353 -144287787 - L1MD2 LINE L1 -978 5562 5474 * 1864 133 50 0 chrX 32686353 32686632 -144287508 + AluSg SINE Alu 1 293 -17 10069 220 45 27 chrX 32686632 32687168 -144286972 - L1MD2 LINE L1 -1066 5474 4949 1905 122 6 35 chrX 32687168 32687513 -144286627 - L1MA2 LINE L1 0 6304 5970 10069 220 45 27 chrX 32687513 32687630 -144286510 - L1MD2 LINE L1 -1591 4949 4836 243 61 0 0 chrX 32687630 32687663 -144286477 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2080 120 0 0 chrX 32687665 32687949 -144286191 - AluSq SINE Alu -29 284 1 10069 220 45 27 chrX 32687949 32688015 -144286125 - L1MD2 LINE L1 -1704 4836 4773 14541 125 18 27 chrX 32688015 32690454 -144283686 - Tigger1 DNA MER2_type 0 2418 1 10069 220 45 27 chrX 32690454 32692757 -144281383 - L1MD2 LINE L1 -1767 4773 2365 216 0 0 0 chrX 32692757 32692781 -144281359 + (TG)n Simple_repeat Simple_repeat 2 25 0 10069 220 45 27 chrX 32692781 32693285 -144280855 - L1MD2 LINE L1 -4175 2365 1872 861 204 87 0 chrX 32693289 32693528 -144280612 - L1MD2 LINE L1 -4538 1933 1572 2458 51 0 3 chrX 32693696 32693991 -144280149 - AluY SINE Alu -16 295 2 219 69 0 0 chrX 32694655 32694684 -144279456 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 342 299 82 17 chrX 32695698 32696103 -144278037 - L1M4 LINE L1 -957 5189 4759 355 304 35 101 chrX 32696155 32696501 -144277639 - L1M4 LINE L1 -1456 4690 4368 233 216 0 0 chrX 32696691 32696742 -144277398 + L1ME LINE L1 5571 5621 -500 335 338 46 7 chrX 32696744 32696895 -144277245 + L1ME4a LINE L1 5949 6105 -16 530 220 28 0 chrX 32697010 32697119 -144277021 + MIR SINE MIR 36 147 -115 476 243 26 26 chrX 32698534 32698686 -144275454 + MIR SINE MIR 111 262 0 207 194 0 0 chrX 32699588 32699624 -144274516 + CT-rich Low_complexity Low_complexity 4 39 0 4165 119 118 93 chrX 32699663 32700243 -144273897 - L1MC3 LINE L1 0 7785 7221 260 295 51 0 chrX 32700243 32700321 -144273819 - MLT1F1 LTR MaLR -436 131 50 1735 93 24 0 chrX 32700330 32700578 -144273562 - L1PA11 LINE L1 -3 6171 5918 4165 119 118 93 chrX 32700578 32700964 -144273176 - L1MC3 LINE L1 -571 7214 6706 1399 182 30 30 chrX 32700973 32701242 -144272898 + AluJo SINE Alu 37 305 -7 6668 154 23 22 chrX 32701245 32702515 -144271625 - L1MC3 LINE L1 -1054 6731 5461 11019 202 18 12 chrX 32702520 32704153 -144269987 + L1PB1 LINE L1 1669 3306 -2840 2185 130 0 7 chrX 32704153 32704453 -144269687 + AluSq SINE Alu 1 298 -15 11019 202 18 12 chrX 32704453 32705845 -144268295 + L1PB1 LINE L1 3306 4687 -1459 5630 110 28 1 chrX 32705845 32707041 -144267099 + L1PB1 LINE L1 4928 6147 -4 1060 166 27 10 chrX 32707041 32707379 -144266761 - L1MC3 LINE L1 -743 5403 5127 5252 234 34 17 chrX 32707381 32708075 -144266065 - L1MC3 LINE L1 -1043 5103 4422 2286 96 7 7 chrX 32708075 32708377 -144265763 - AluSq SINE Alu -11 302 1 5252 234 34 17 chrX 32708377 32709260 -144264880 - L1MC3 LINE L1 -1724 4422 3499 1074 164 17 58 chrX 32709265 32709323 -144264817 - MER33 DNA MER1_type -2304 281 222 2237 133 0 0 chrX 32709323 32709632 -144264508 + AluSx SINE Alu 1 309 -3 1074 164 17 58 chrX 32709632 32709865 -144264275 - MER33 DNA MER1_type -2363 222 2 272 170 0 0 chrX 32709866 32709919 -144264221 + MER97a DNA MER1_type? 197 249 -645 208 250 0 0 chrX 32710721 32710769 -144263371 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 186 294 0 0 chrX 32710957 32711008 -144263132 - MIR SINE MIR -103 159 109 2997 128 14 50 chrX 32711086 32711649 -144262491 - L1MA10 LINE L1 -1 6333 5791 278 343 9 94 chrX 32711702 32711915 -144262225 + MIR SINE MIR 67 261 -1 506 274 139 30 chrX 32712147 32712348 -144261792 - MIR SINE MIR -35 227 5 293 315 56 28 chrX 32712895 32713003 -144261137 - MIR3 SINE MIR -87 121 11 226 297 59 20 chrX 32713420 32713521 -144260619 - L2 LINE L2 0 3313 3209 236 218 18 0 chrX 32714337 32714392 -144259748 - Charlie8 DNA MER1_type -2227 190 135 221 313 16 0 chrX 32714508 32714572 -144259568 + L2 LINE L2 3249 3313 0 2014 128 0 0 chrX 32715776 32716050 -144258090 + AluSx SINE Alu 24 297 -15 352 183 19 39 chrX 32716197 32716301 -144257839 + L1MB2 LINE L1 6070 6171 0 289 291 24 39 chrX 32717062 32717189 -144256951 + L2 LINE L2 3182 3306 -7 384 264 33 77 chrX 32717669 32717851 -144256289 + L3b LINE CR1 1223 1396 -187 573 214 12 69 chrX 32718130 32718303 -144255837 - MER20 DNA MER1_type -56 163 1 356 385 42 35 chrX 32720676 32720962 -144253178 + L1MDa LINE L1 1 288 -6252 2196 216 126 27 chrX 32721482 32722416 -144251724 + L1MDa LINE L1 956 1935 -4605 1282 258 125 31 chrX 32722417 32723174 -144250966 + L1MDa LINE L1 2259 3060 -3480 1899 115 51 63 chrX 32723174 32723505 -144250635 + MER1B DNA MER1_type 1 327 -12 1749 218 57 32 chrX 32723505 32723749 -144250391 + L1MDa LINE L1 3101 3338 -3202 2378 107 0 0 chrX 32723749 32724058 -144250082 + AluSx SINE Alu 1 309 -3 1749 218 57 32 chrX 32724058 32724429 -144249711 + L1MDa LINE L1 3338 3731 -2809 818 243 81 21 chrX 32724458 32724792 -144249348 - L1M4 LINE L1 -2392 3754 3401 254 258 16 0 chrX 32725596 32725658 -144248482 - MIR3 SINE MIR -23 185 123 335 219 27 0 chrX 32726676 32726749 -144247391 + L2 LINE L2 3232 3306 -7 333 270 141 31 chrX 32726918 32727081 -144247059 + MIR SINE MIR 58 238 -24 268 204 30 23 chrX 32730051 32730183 -144243957 + GA-rich Low_complexity Low_complexity 1 133 0 1604 136 62 49 chrX 32731592 32731841 -144242299 + L1MD3 LINE L1 7684 7939 -56 2405 63 3 47 chrX 32731841 32732160 -144241980 - AluSp SINE Alu -8 305 1 1604 136 62 49 chrX 32732160 32732218 -144241922 + L1MD3 LINE L1 7939 7995 0 838 136 0 50 chrX 32732274 32732414 -144241726 + FLAM_C SINE Alu 1 133 0 1952 103 8 0 chrX 32736046 32736309 -144237831 + AluSx SINE Alu 38 302 -10 742 128 37 0 chrX 32736309 32736413 -144237727 + AluJo SINE Alu 29 136 -176 27 81 0 0 chrX 32736447 32736509 -144237631 + AT_rich Low_complexity Low_complexity 1 62 0 2349 150 40 2 chrX 32738217 32738617 -144235523 + L1MB2 LINE L1 5755 6169 -2 384 22 0 0 chrX 32739605 32739650 -144234490 + (CA)n Simple_repeat Simple_repeat 2 46 0 1762 147 0 33 chrX 32740222 32740528 -144233612 + AluJo SINE Alu 1 296 -16 219 238 0 0 chrX 32741530 32741572 -144232568 + polypurine Low_complexity Low_complexity 4 45 0 2356 254 58 44 chrX 32741859 32742306 -144231834 + L2 LINE L2 1042 1481 -1833 861 291 78 26 chrX 32742306 32742691 -144231449 - MLT1I LTR MaLR -2 407 3 2356 254 58 44 chrX 32742691 32742902 -144231238 + L2 LINE L2 1481 1716 -1598 1733 184 0 0 chrX 32742902 32743221 -144230919 + AluJo SINE Alu 1 319 0 2356 254 58 44 chrX 32743221 32743360 -144230780 + L2 LINE L2 1716 1852 -1462 1646 108 21 21 chrX 32743372 32743612 -144230528 - MSTA LTR MaLR 0 428 189 4231 85 9 0 chrX 32743612 32744156 -144229984 - L1PA8 LINE L1 -1 6171 5623 3289 80 0 12 chrX 32744156 32744715 -144229425 + L1PA8A LINE L1 4930 5479 -652 2131 95 18 11 chrX 32744715 32745019 -144229121 + AluSx SINE Alu 1 312 0 3289 80 0 12 chrX 32745019 32745217 -144228923 + L1PA8A LINE L1 5479 5678 -453 1388 108 31 0 chrX 32745217 32745412 -144228728 - MSTA LTR MaLR -227 201 1 1012 306 73 23 chrX 32745414 32745855 -144228285 + L2 LINE L2 1859 2321 -993 232 353 12 0 chrX 32745891 32745976 -144228164 - MIR3 SINE MIR -36 172 87 1816 163 0 10 chrX 32746575 32746884 -144227256 + AluSx SINE Alu 1 306 0 218 342 0 13 chrX 32747072 32747151 -144226989 + MIR3 SINE MIR 103 180 -28 1664 149 60 26 chrX 32747201 32747503 -144226637 + AluJo SINE Alu 1 312 0 180 0 0 0 chrX 32747648 32747668 -144226472 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1668 148 10 64 chrX 32747671 32747969 -144226171 - AluJb SINE Alu -30 282 1 1634 258 161 55 chrX 32747998 32748428 -144225712 + L1M4 LINE L1 2965 3348 -2798 2300 88 3 0 chrX 32748428 32748722 -144225418 + AluSg SINE Alu 1 295 -15 1634 258 161 55 chrX 32748722 32748733 -144225407 + L1M4 LINE L1 3348 3356 -2790 2205 116 20 0 chrX 32748733 32749034 -144225106 + AluSx SINE Alu 1 307 -5 1634 258 161 55 chrX 32749034 32749365 -144224775 + L1M4 LINE L1 3356 3651 -2495 2241 123 0 0 chrX 32749365 32749667 -144224473 - AluSx SINE Alu -10 302 1 1634 258 161 55 chrX 32749667 32750230 -144223910 + L1M4 LINE L1 3651 4443 -1703 291 261 125 45 chrX 32750326 32750502 -144223638 + L1ME3A LINE L1 5927 6116 -54 2516 50 0 3 chrX 32750549 32750847 -144223293 - AluY SINE Alu -14 297 1 223 382 59 0 chrX 32751025 32751148 -144222992 + MIR SINE MIR 17 147 -61 183 344 172 7 chrX 32751749 32751900 -144222240 + MIR SINE MIR 1 176 -86 1940 116 38 27 chrX 32752228 32752521 -144221619 + AluSx SINE Alu 1 296 -16 1164 231 0 22 chrX 32752892 32753121 -144221019 - MER58A DNA MER1_type 0 224 1 757 181 144 12 chrX 32753129 32753289 -144220851 - MER5A DNA MER1_type 0 189 9 416 291 99 14 chrX 32753305 32753338 -144220802 + MER5B DNA MER1_type 17 46 -132 240 35 0 0 chrX 32753338 32753367 -144220773 + (CA)n Simple_repeat Simple_repeat 2 30 0 416 291 99 14 chrX 32753367 32753474 -144220666 + MER5B DNA MER1_type 46 169 -9 2451 90 0 0 chrX 32753756 32754068 -144220072 + AluSx SINE Alu 1 312 0 787 174 133 31 chrX 32755885 32756081 -144218059 - MER58A DNA MER1_type 0 224 9 2381 77 0 0 chrX 32756146 32756432 -144217708 + AluSg SINE Alu 1 286 -24 2635 107 79 60 chrX 32756601 32757021 -144217119 - MSTC LTR MaLR 0 428 1 1957 147 3 0 chrX 32757270 32757562 -144216578 - AluJb SINE Alu -19 293 1 252 248 238 0 chrX 32757710 32757811 -144216329 - MER5A DNA MER1_type 0 189 65 226 268 62 62 chrX 32758322 32758434 -144215706 + MLT1H1 LTR MaLR 37 148 -407 268 250 238 12 chrX 32758597 32758765 -144215375 + L1ME4a LINE L1 5843 6048 -73 1705 100 4 0 chrX 32758840 32759070 -144215070 - AluSq SINE Alu -11 302 72 185 257 100 14 chrX 32759113 32759183 -144214957 + MIR SINE MIR 79 154 -108 2012 113 0 53 chrX 32759187 32759505 -144214635 + AluSq SINE Alu 11 311 -2 772 109 40 103 chrX 32759610 32759784 -144214356 - MLT1E2 LTR MaLR -446 180 18 2505 149 51 33 chrX 32759799 32760248 -144213892 - MSTB2 LTR MaLR 0 457 1 27 0 0 0 chrX 32760285 32760312 -144213828 + AT_rich Low_complexity Low_complexity 1 27 0 210 382 0 9 chrX 32761076 32761186 -144212954 + GA-rich Low_complexity Low_complexity 3 111 0 212 371 46 7 chrX 32761355 32761506 -144212634 - L2 LINE L2 -1637 1677 1521 258 255 160 9 chrX 32761742 32761848 -144212292 + MIR3 SINE MIR 81 202 -6 352 216 78 85 chrX 32762106 32762259 -144211881 - MIR SINE MIR -79 183 32 470 257 97 80 chrX 32763837 32764553 -144209587 + L1ME LINE L1 534 1213 -4867 2171 125 70 9 chrX 32764773 32765116 -144209024 + MER47A DNA MER2_type 1 364 -2 4100 95 39 47 chrX 32765192 32765630 -144208510 + L1MA3 LINE L1 5666 6106 -199 2027 130 3 16 chrX 32765630 32765799 -144208341 - AluSx SINE Alu -9 303 138 2086 78 0 19 chrX 32765799 32766067 -144208073 - AluY SINE Alu -9 302 40 2027 130 3 16 chrX 32766067 32766204 -144207936 - AluSx SINE Alu -174 138 1 4100 95 39 47 chrX 32766204 32766216 -144207924 + L1MA3 LINE L1 6106 6117 -188 1799 148 3 30 chrX 32766216 32766521 -144207619 - AluJb SINE Alu -15 297 1 4100 95 39 47 chrX 32766521 32766714 -144207426 + L1MA3 LINE L1 6117 6305 0 2023 128 7 10 chrX 32766854 32767160 -144206980 + AluSx SINE Alu 1 305 -7 2365 106 0 3 chrX 32767160 32767471 -144206669 + AluSg SINE Alu 1 310 0 346 289 23 81 chrX 32767485 32767532 -144206608 - MIR3 SINE MIR -16 192 144 2295 73 3 22 chrX 32767532 32767848 -144206292 + AluSg SINE Alu 1 310 0 346 289 23 81 chrX 32767848 32767973 -144206167 - MIR3 SINE MIR -64 144 30 27 49 0 0 chrX 32768038 32768079 -144206061 + AT_rich Low_complexity Low_complexity 1 41 0 519 17 0 0 chrX 32768211 32768271 -144205869 + (CA)n Simple_repeat Simple_repeat 2 61 0 2232 109 0 16 chrX 32768474 32768777 -144205363 + AluSg SINE Alu 1 298 -12 1646 133 126 0 chrX 32769371 32769634 -144204506 + AluSx SINE Alu 1 296 -16 2234 101 0 32 chrX 32769638 32769954 -144204186 + AluSx SINE Alu 1 306 -6 26 0 0 0 chrX 32769956 32769982 -144204158 + AT_rich Low_complexity Low_complexity 1 26 0 222 91 0 0 chrX 32770249 32770282 -144203858 + (TC)n Simple_repeat Simple_repeat 1 33 0 2357 89 3 16 chrX 32770331 32770645 -144203495 - AluY SINE Alu -1 310 1 2215 110 3 0 chrX 32770753 32771053 -144203087 - AluSg SINE Alu -9 301 1 2045 213 47 40 chrX 32772540 32773070 -144201070 + MLT1H LTR MaLR 1 534 -15 184 349 12 36 chrX 32773099 32773182 -144200958 - L2 LINE L2 -1 3271 3191 514 329 82 64 chrX 32773261 32774068 -144200072 - L2 LINE L2 -221 3051 2230 1345 204 42 13 chrX 32774624 32775080 -144199060 + L1MB3 LINE L1 5078 5554 -626 1315 197 59 4 chrX 32775080 32775334 -144198806 + AluJo SINE Alu 13 280 -32 2229 108 3 0 chrX 32775334 32775639 -144198501 - AluSx SINE Alu -6 306 1 3152 149 39 14 chrX 32775666 32776190 -144197950 + L1MB3 LINE L1 5595 6136 -47 1906 129 61 4 chrX 32776190 32776469 -144197671 + AluSx SINE Alu 1 295 -17 3152 149 39 14 chrX 32776469 32776516 -144197624 + L1MB3 LINE L1 6136 6180 -3 2392 189 39 82 chrX 32776528 32777247 -144196893 + L1ME3 LINE L1 5426 6113 -49 370 0 0 0 chrX 32777247 32777288 -144196852 + (TTTA)n Simple_repeat Simple_repeat 4 144 0 762 120 0 0 chrX 32777288 32777389 -144196751 - AluSg/x SINE Alu -1 327 187 1723 170 0 52 chrX 32777788 32778117 -144196023 - AluJb SINE Alu 0 312 1 2097 102 7 0 chrX 32778387 32778696 -144195444 + AluSx SINE Alu 9 312 0 1292 194 61 7 chrX 32779114 32779408 -144194732 + AluJo SINE Alu 1 310 -2 2666 30 0 0 chrX 32779408 32779703 -144194437 - AluY SINE Alu -16 295 1 22 0 0 0 chrX 32779703 32779725 -144194415 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chrX 32780906 32780947 -144193193 + (TG)n Simple_repeat Simple_repeat 1 41 0 399 68 0 0 chrX 32780947 32781006 -144193134 + (GA)n Simple_repeat Simple_repeat 2 60 0 319 271 101 110 chrX 32781917 32782543 -144191597 + L1M2 LINE L1 815 1384 -5465 22 0 0 0 chrX 32785027 32785049 -144189091 + AT_rich Low_complexity Low_complexity 1 22 0 244 136 51 0 chrX 32785661 32785720 -144188420 + GA-rich Low_complexity Low_complexity 1 62 0 1504 141 144 4 chrX 32785772 32786028 -144188112 + AluSx SINE Alu 1 292 -10 1620 191 115 28 chrX 32786213 32786392 -144187748 + MLT1C LTR MaLR 6 168 -299 369 0 0 0 chrX 32786392 32786433 -144187707 + (CA)n Simple_repeat Simple_repeat 2 42 0 1620 191 115 28 chrX 32786433 32786678 -144187462 + MLT1C LTR MaLR 168 467 0 2237 109 3 0 chrX 32786779 32787072 -144187068 + AluSx SINE Alu 1 294 -18 185 235 106 82 chrX 32787113 32787198 -144186942 - L3 LINE CR1 0 1577 1491 2188 118 0 7 chrX 32787223 32787528 -144186612 - AluSx SINE Alu -9 303 1 2151 114 42 36 chrX 32787863 32788196 -144185944 - MER1B DNA MER1_type 0 337 3 1631 154 91 51 chrX 32788329 32788680 -144185460 - MLT1A1 LTR MaLR 0 365 1 2105 132 0 0 chrX 32789544 32789839 -144184301 + AluSx SINE Alu 2 296 -16 618 277 20 15 chrX 32790209 32790411 -144183729 + L2 LINE L2 3109 3311 -2 921 143 0 0 chrX 32790489 32790622 -144183518 + FLAM_C SINE Alu 1 133 0 800 203 40 0 chrX 32791604 32791773 -144182367 - MER45A DNA AcHobo 0 178 1 462 319 0 9 chrX 32791773 32791886 -144182254 - MER5B DNA MER1_type -62 116 5 5257 75 5 3 chrX 32792520 32793170 -144180970 + L1PA11 LINE L1 5524 6174 0 341 248 7 95 chrX 32793681 32793818 -144180322 + LTR16A1 LTR ERVL 1 125 -332 426 281 23 9 chrX 32793909 32794161 -144179979 + LTR16A1 LTR ERVL 166 457 0 2264 91 3 0 chrX 32794608 32794894 -144179246 + AluSp SINE Alu 1 287 -26 1412 268 75 27 chrX 32794920 32795398 -144178742 - LTR33 LTR ERVL -2 519 19 2699 153 19 16 chrX 32795445 32795870 -144178270 + MSTB LTR MaLR 1 426 0 2366 109 0 0 chrX 32796623 32796935 -144177205 + AluSx SINE Alu 1 312 0 4839 153 23 38 chrX 32797115 32797979 -144176161 + MER6 DNA MER2_type 2 852 -13 206 329 0 25 chrX 32798329 32798408 -144175732 - L2 LINE L2 0 3272 3196 1983 170 21 128 chrX 32798701 32799225 -144174915 + MLT1D LTR MaLR 1 468 -37 647 273 35 0 chrX 32799364 32799536 -144174604 + MLT1G LTR MaLR 1 178 -412 476 171 108 27 chrX 32800370 32800481 -144173659 - L1MC4 LINE L1 -143 7899 7780 1884 162 0 16 chrX 32801198 32801366 -144172774 - AluJb SINE Alu -8 304 142 2043 134 0 10 chrX 32801366 32801672 -144172468 - AluJb SINE Alu -9 303 1 1884 162 0 16 chrX 32801672 32801812 -144172328 - AluJb SINE Alu -170 142 1 22 0 0 0 chrX 32801891 32801913 -144172227 + AT_rich Low_complexity Low_complexity 1 22 0 1542 90 19 0 chrX 32802242 32802453 -144171687 - Tigger1 DNA MER2_type 0 2418 2204 796 191 0 21 chrX 32802454 32802595 -144171545 - Tigger1 DNA MER2_type -2280 138 1 1310 233 46 11 chrX 32802596 32802965 -144171175 - L1M4 LINE L1 -1808 4338 3957 537 271 59 49 chrX 32803461 32803664 -144170476 + MIR3 SINE MIR 4 208 0 2905 218 28 7 chrX 32804332 32804902 -144169238 + MLT1G LTR MaLR 1 582 -8 509 273 0 38 chrX 32805281 32805413 -144168727 + MIR SINE MIR 33 159 -103 430 238 133 20 chrX 32805867 32806018 -144168122 + MIR SINE MIR 20 187 -75 2161 104 7 3 chrX 32806318 32806605 -144167535 + AluSp SINE Alu 1 288 -25 357 24 0 0 chrX 32806605 32806647 -144167493 + (CA)n Simple_repeat Simple_repeat 2 43 0 778 253 108 8 chrX 32806648 32806889 -144167251 + L1ME3 LINE L1 5897 6161 -1 342 0 0 0 chrX 32807484 32807522 -144166618 + (TG)n Simple_repeat Simple_repeat 2 39 0 2097 132 0 0 chrX 32808207 32808503 -144165637 - AluJb SINE Alu -16 296 1 938 121 0 8 chrX 32808537 32808669 -144165471 - AluSq SINE Alu -56 257 127 2140 127 3 7 chrX 32808677 32808985 -144165155 - AluSx SINE Alu -5 307 1 230 349 66 0 chrX 32809032 32809138 -144165002 + L2 LINE L2 3201 3313 0 2597 40 0 0 chrX 32809859 32810155 -144163985 - AluY SINE Alu -15 296 1 25 0 0 0 chrX 32810670 32810695 -144163445 + AT_rich Low_complexity Low_complexity 1 25 0 2523 157 25 54 chrX 32811244 32811689 -144162451 + MSTB1 LTR MaLR 1 432 0 180 0 0 0 chrX 32812300 32812320 -144161820 + (A)n Simple_repeat Simple_repeat 1 20 0 2311 86 21 0 chrX 32812321 32812612 -144161528 + AluSx SINE Alu 1 297 -15 25 31 0 0 chrX 32812612 32812644 -144161496 + AT_rich Low_complexity Low_complexity 1 32 0 2300 162 30 10 chrX 32812654 32813049 -144161091 + MER65A LTR ERV1 42 444 -1 293 298 16 16 chrX 32813056 32813180 -144160960 + A-rich Low_complexity Low_complexity 2 125 0 494 268 24 8 chrX 32814004 32814131 -144160009 + MER94 DNA DNA 1 129 -5 180 111 0 0 chrX 32814178 32814205 -144159935 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1922 155 0 10 chrX 32814241 32814538 -144159602 + AluJb SINE Alu 1 294 -18 1410 181 88 78 chrX 32815231 32815600 -144158540 + MLT2D LTR ERVL 1 376 -38 607 69 20 10 chrX 32815600 32815702 -144158438 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 1410 181 88 78 chrX 32815702 32815740 -144158400 + MLT2D LTR ERVL 376 412 -2 1941 152 13 22 chrX 32817135 32817450 -144156690 + AluJo SINE Alu 1 312 0 2200 103 3 7 chrX 32817479 32817780 -144156360 + AluSx SINE Alu 1 300 -12 2147 134 13 0 chrX 32817904 32818210 -144155930 - AluSx SINE Alu 0 312 3 540 266 57 13 chrX 32818245 32818403 -144155737 + MIR SINE MIR 11 175 -87 1314 183 18 53 chrX 32818472 32818757 -144155383 - LTR16C LTR ERVL -6 485 211 215 333 0 0 chrX 32818765 32818834 -144155306 - L2 LINE L2 -60 3253 3185 207 319 0 42 chrX 32819008 32819080 -144155060 + L2 LINE L2 2997 3065 -248 200 257 54 0 chrX 32819207 32819281 -144154859 + L2 LINE L2 3193 3270 -2 2030 116 3 10 chrX 32819656 32819949 -144154191 - AluJb SINE Alu -21 291 1 1392 194 45 36 chrX 32820259 32820616 -144153524 - Tigger7 DNA MER2_type 0 2491 1 3326 130 56 30 chrX 32820618 32820979 -144153161 + Tigger6a DNA MER2_type 420 803 -794 2167 95 0 0 chrX 32820979 32821253 -144152887 - AluSx SINE Alu -15 297 24 3326 130 56 30 chrX 32821253 32821482 -144152658 + Tigger6a DNA MER2_type 803 1025 -58 201 108 0 0 chrX 32821785 32821822 -144152318 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1385 158 130 0 chrX 32821825 32822071 -144152069 - AluJo SINE Alu -31 281 4 399 160 40 13 chrX 32822303 32822378 -144151762 + MER92B LTR ERV1 512 588 -48 24 0 0 0 chrX 32823288 32823312 -144150828 + AT_rich Low_complexity Low_complexity 1 24 0 2012 110 71 0 chrX 32823319 32823601 -144150539 + AluSp SINE Alu 1 302 -11 314 89 0 0 chrX 32823601 32823646 -144150494 - L1MB2 LINE L1 -9 6162 6118 881 196 5 22 chrX 32823726 32823910 -144150230 - L1MB2 LINE L1 -38 6133 5953 390 235 76 68 chrX 32823910 32823969 -144150171 + MIR SINE MIR 130 187 -75 1962 165 51 11 chrX 32823969 32824320 -144149820 + MLT1A1 LTR MaLR 1 365 0 390 235 76 68 chrX 32824320 32824392 -144149748 + MIR SINE MIR 187 262 0 402 249 53 35 chrX 32824732 32824901 -144149239 + Charlie8 DNA MER1_type 51 222 -2195 2301 223 15 47 chrX 32825133 32825162 -144148978 - LTR40a LTR ERVL -2 517 489 3020 103 5 0 chrX 32825162 32825571 -144148569 - L1PA12 LINE L1 0 6168 5758 2301 223 15 47 chrX 32825571 32825869 -144148271 - LTR40a LTR ERVL -30 489 211 1606 106 13 46 chrX 32825869 32826106 -144148034 - MER30 DNA MER1_type 0 230 2 2301 223 15 47 chrX 32826106 32826311 -144147829 - LTR40a LTR ERVL -308 211 1 2508 200 76 108 chrX 32826411 32826667 -144147473 - MER21B LTR ERV1 -63 800 537 2101 103 21 7 chrX 32826667 32826949 -144147191 + AluSx SINE Alu 1 286 -26 2508 200 76 108 chrX 32826949 32827498 -144146642 - MER21B LTR ERV1 -326 537 19 334 226 0 0 chrX 32827522 32827584 -144146556 - MER21B LTR ERV1 -776 87 26 1703 167 42 0 chrX 32827584 32827872 -144146268 - AluSx SINE Alu -12 300 1 570 313 63 56 chrX 32827953 32828622 -144145518 - L2 LINE L2 0 3272 2376 828 54 0 1 chrX 32830025 32830142 -144143998 - L1P4 LINE L1 -483 5683 5568 2099 103 7 14 chrX 32830585 32830877 -144143263 - AluSx SINE Alu -22 290 1 801 151 0 0 chrX 32831255 32831374 -144142766 - FLAM_C SINE Alu -24 119 1 489 204 49 56 chrX 32832147 32832289 -144141851 + MIR3 SINE MIR 11 151 -57 231 36 0 0 chrX 32832455 32832483 -144141657 + (TC)n Simple_repeat Simple_repeat 1 28 0 2205 104 20 0 chrX 32832589 32832888 -144141252 - AluSc SINE Alu -4 305 1 3588 118 21 58 chrX 32832967 32833376 -144140764 + L1MA7 LINE L1 5693 6073 -218 2103 104 7 11 chrX 32833376 32833663 -144140477 + AluSg SINE Alu 1 286 -24 3588 118 21 58 chrX 32833663 32833869 -144140271 + L1MA7 LINE L1 6073 6285 -6 1243 244 124 29 chrX 32834152 32834602 -144139538 + LTR33 LTR ERVL 29 521 0 500 271 195 47 chrX 32834602 32835046 -144139094 - LTR33A LTR ERVL -11 512 3 329 279 22 51 chrX 32835047 32835204 -144138936 + MIR SINE MIR 62 214 -48 567 228 35 0 chrX 32835928 32836042 -144138098 + MER5B DNA MER1_type 1 118 -60 6038 103 12 5 chrX 32836047 32836899 -144137241 - L1PA15 LINE L1 -6 6159 5302 320 164 0 33 chrX 32836899 32836960 -144137180 + MER5B DNA MER1_type 115 173 -5 269 302 54 23 chrX 32837296 32837425 -144136715 - MIR3 SINE MIR -73 135 3 2210 101 30 0 chrX 32837839 32838136 -144136004 - AluSx SINE Alu -6 306 1 660 130 189 78 chrX 32838406 32838660 -144135480 - MER4C LTR ERV1 -18 447 165 363 176 15 114 chrX 32838669 32838800 -144135340 - MER4A LTR ERV1 -322 342 225 340 189 126 53 chrX 32838930 32839025 -144135115 - MER5A DNA MER1_type -1 188 87 2076 90 29 26 chrX 32839045 32839356 -144134784 - AluSx SINE Alu 0 312 1 625 74 16 41 chrX 32839365 32839486 -144134654 + (TTTC)n Simple_repeat Simple_repeat 4 121 0 2264 88 13 3 chrX 32839495 32839802 -144134338 - AluSx SINE Alu -2 310 1 1617 204 52 36 chrX 32839939 32840412 -144133728 - MER74B LTR ERVL 0 622 55 2557 20 7 20 chrX 32840424 32840725 -144133415 + AluY SINE Alu 1 297 -14 1542 149 84 8 chrX 32841042 32841339 -144132801 - AluJo SINE Alu 0 317 1 23 33 0 0 chrX 32842312 32842342 -144131798 + AT_rich Low_complexity Low_complexity 1 30 0 192 314 118 0 chrX 32842618 32842720 -144131420 + L3 LINE CR1 1301 1414 -163 515 305 138 5 chrX 32842804 32843007 -144131133 - MIR SINE MIR -13 249 20 386 107 18 0 chrX 32843532 32843588 -144130552 + Tigger2 DNA MER2_type 1 57 -2661 982 200 0 0 chrX 32845117 32845277 -144128863 - MER8 DNA MER2_type -78 161 2 180 0 0 0 chrX 32845589 32845609 -144128531 + (A)n Simple_repeat Simple_repeat 1 20 0 2152 131 3 0 chrX 32845925 32846223 -144127917 + AluSx SINE Alu 1 299 -13 1610 159 55 17 chrX 32846732 32847022 -144127118 - AluJo SINE Alu -11 301 1 651 165 0 0 chrX 32847279 32847394 -144126746 - L1MA7 LINE L1 -5 6286 6172 1377 278 97 49 chrX 32847845 32848103 -144126037 - L1MC4a LINE L1 -743 5403 5159 2298 97 0 3 chrX 32848103 32848402 -144125738 + AluSp SINE Alu 2 299 -14 1377 278 97 49 chrX 32848402 32848818 -144125322 - L1MC4a LINE L1 -987 5159 4764 2408 93 0 0 chrX 32848818 32849118 -144125022 - AluSg SINE Alu -10 300 1 1377 278 97 49 chrX 32849118 32849550 -144124590 - L1MC4a LINE L1 -1382 4764 4725 2684 33 0 0 chrX 32849550 32849852 -144124288 - AluY SINE Alu -9 302 1 1377 278 97 49 chrX 32849852 32850232 -144123908 - L1MC4a LINE L1 -1421 4725 4365 409 97 0 16 chrX 32850235 32850297 -144123843 + MADE1 DNA Mariner 2 62 -18 30 0 0 0 chrX 32850404 32850434 -144123706 + AT_rich Low_complexity Low_complexity 1 30 0 279 281 65 55 chrX 32850434 32850633 -144123507 - L1ME3A LINE L1 -2 6168 5968 466 266 65 13 chrX 32850703 32850857 -144123283 - L1ME3A LINE L1 -230 5940 5779 1575 171 3 50 chrX 32851028 32851350 -144122790 - AluJo SINE Alu -5 307 1 1631 183 4 7 chrX 32851504 32851778 -144122362 - AluJo SINE Alu -12 300 28 877 142 0 8 chrX 32852176 32852310 -144121830 - FLAM_C SINE Alu -6 137 5 2547 199 14 29 chrX 32852431 32852993 -144121147 - L1ME1 LINE L1 -5 6972 6419 2465 83 0 13 chrX 32853006 32853320 -144120820 - AluSx SINE Alu -2 310 1 14370 124 29 19 chrX 32853320 32855357 -144118783 + Tigger1 DNA MER2_type 178 2240 -178 2620 53 0 0 chrX 32855357 32855659 -144118481 - AluY SINE Alu -9 302 1 14370 124 29 19 chrX 32855659 32855839 -144118301 + Tigger1 DNA MER2_type 2240 2417 -1 1563 182 47 84 chrX 32855839 32856351 -144117789 - L1ME1 LINE L1 -877 6080 5588 1503 87 13 48 chrX 32856371 32856496 -144117644 - L1MA1 LINE L1 -402 5900 5785 2453 84 3 3 chrX 32856496 32856807 -144117333 - AluY SINE Alu 0 311 1 1503 87 13 48 chrX 32856807 32856912 -144117228 - L1MA1 LINE L1 -517 5785 5678 388 107 0 0 chrX 32856912 32856962 -144117178 + L1MA3 LINE L1 6250 6305 0 21 0 0 0 chrX 32856962 32856983 -144117157 + AT_rich Low_complexity Low_complexity 1 21 0 1339 173 28 0 chrX 32857020 32857274 -144116866 + L1 LINE L1 4834 5094 -1052 * 2920 238 52 59 chrX 32857268 32859919 -144114221 - L1ME1 LINE L1 -3179 3778 1029 306 284 20 24 chrX 32860238 32860406 -144113734 - L1ME1 LINE L1 -6306 549 91 2220 92 0 0 chrX 32860614 32860918 -144113222 - AluSx SINE Alu 0 304 1 1776 164 31 0 chrX 32862392 32862685 -144111455 - AluJb SINE Alu -8 304 3 529 228 88 47 chrX 32862797 32862990 -144111150 + MIR SINE MIR 1 201 -61 201 376 53 15 chrX 32863132 32863265 -144110875 - L2 LINE L2 -17 3255 3118 2401 71 3 0 chrX 32863274 32863571 -144110569 - AluSx SINE Alu -14 298 1 579 307 39 0 chrX 32863684 32863837 -144110303 + MIR SINE MIR 20 178 -84 209 271 34 0 chrX 32864479 32864538 -144109602 - L2 LINE L2 -7 3265 3205 1125 53 0 0 chrX 32864555 32864686 -144109454 + AluSg SINE Alu 1 131 -179 1660 161 38 7 chrX 32864806 32865097 -144109043 + MSTB2 LTR MaLR 1 300 -157 1339 31 0 0 chrX 32865127 32865288 -144108852 + L1PA5 LINE L1 5898 6058 -96 861 164 6 68 chrX 32865288 32865465 -144108675 + MSTB2 LTR MaLR 290 455 -2 2415 202 67 32 chrX 32866920 32867485 -144106655 + MER77 LTR ERV1 41 598 -7 1299 236 29 66 chrX 32867576 32867987 -144106153 - LTR16A LTR ERVL 0 450 55 965 155 10 125 chrX 32868687 32868780 -144105360 + MER33 DNA MER1_type 61 163 -2422 2188 118 0 3 chrX 32868780 32869086 -144105054 - AluSg1 SINE Alu -4 305 1 965 155 10 125 chrX 32869086 32869188 -144104952 + MER33 DNA MER1_type 163 213 -2372 2383 103 0 0 chrX 32869188 32869498 -144104642 - AluSx SINE Alu -2 310 1 965 155 10 125 chrX 32869498 32869598 -144104542 + MER33 DNA MER1_type 213 323 -1 605 244 15 0 chrX 32869643 32869778 -144104362 + LTR16C LTR ERVL 332 468 -23 347 123 0 0 chrX 32870536 32870600 -144103540 - Alu SINE Alu -252 50 1 246 136 0 0 chrX 32870915 32870959 -144103181 + (TTTTC)n Simple_repeat Simple_repeat 4 47 0 567 0 0 0 chrX 32871278 32871341 -144102799 + (TA)n Simple_repeat Simple_repeat 1 63 0 2291 117 3 0 chrX 32871344 32871653 -144102487 - AluSx SINE Alu -2 310 1 922 149 8 0 chrX 32871674 32871808 -144102332 - FRAM SINE Alu -32 144 10 559 227 50 0 chrX 32871924 32872065 -144102075 - MER69 DNA AcHobo -1 2525 2378 455 265 0 0 chrX 32872043 32872145 -144101995 - MER69 DNA AcHobo -979 247 146 * 6841 210 34 60 chrX 32872146 32872293 -144101847 - L1M4 LINE L1 -1013 5133 4984 1964 163 0 3 chrX 32872293 32872593 -144101547 + AluJb SINE Alu 1 299 -13 6841 210 34 60 chrX 32872593 32873874 -144100266 - L1M4 LINE L1 -1162 4984 3773 2371 89 0 16 chrX 32873874 32874190 -144099950 - AluSx SINE Alu -1 311 1 6841 210 34 60 chrX 32874190 32874827 -144099313 - L1M4 LINE L1 -2373 3773 3121 1834 182 67 45 chrX 32874853 32875271 -144098869 + MER31B LTR ERV1 1 427 -39 347 43 0 0 chrX 32875273 32875319 -144098821 + MADE1 DNA Mariner 1 46 -34 1283 197 145 8 chrX 32875342 32875693 -144098447 - L1M4 LINE L1 -3144 3002 2604 580 243 129 35 chrX 32876459 32876661 -144097479 + L2 LINE L2 2517 2737 -577 12099 206 8 19 chrX 32876661 32879613 -144094527 + L1MB3 LINE L1 2418 5332 -823 1948 156 0 7 chrX 32879613 32879915 -144094225 + AluSx SINE Alu 1 300 -12 963 143 6 56 chrX 32879923 32880084 -144094056 + AluSg/x SINE Alu 145 297 -15 5394 120 5 0 chrX 32880085 32880918 -144093222 + L1PA15 LINE L1 5322 6158 -7 1316 146 54 0 chrX 32881549 32881809 -144092331 + L1MB3 LINE L1 5690 5963 -220 1741 188 3 13 chrX 32882524 32882827 -144091313 - AluJo SINE Alu -12 300 1 275 341 11 0 chrX 32882982 32883073 -144091067 + MIR SINE MIR 21 112 -150 935 237 93 35 chrX 32884122 32884646 -144089494 - MLT1G LTR MaLR 0 555 1 838 238 31 35 chrX 32885103 32885330 -144088810 - MIR SINE MIR -3 259 34 386 303 35 14 chrX 32886398 32886540 -144087600 - L2 LINE L2 -4 3309 3165 216 339 108 38 chrX 32886690 32887006 -144087134 - L2 LINE L2 -340 2974 2637 582 293 17 11 chrX 32887007 32887188 -144086952 + MIR SINE MIR 81 262 0 27 0 0 0 chrX 32888197 32888224 -144085916 + AT_rich Low_complexity Low_complexity 1 27 0 274 197 0 16 chrX 32888391 32888452 -144085688 - L1ME3A LINE L1 -96 6074 6015 2230 97 0 0 chrX 32888467 32888766 -144085374 - AluSg1 SINE Alu -10 299 1 7525 168 5 0 chrX 32888778 32890936 -144083204 - L1PA13 LINE L1 -4 6159 3988 283 154 0 31 chrX 32890941 32891006 -144083134 - L1PA13 LINE L1 -2712 3434 3372 * 4751 176 20 7 chrX 32890996 32891898 -144082242 - MSTB-int LTR MaLR -737 914 1 1876 177 77 17 chrX 32891898 32892300 -144081840 - MSTB LTR MaLR 0 426 1 5060 130 8 0 chrX 32892506 32893947 -144080193 + L1PA13 LINE L1 4399 5847 -316 943 194 44 0 chrX 32894784 32894964 -144079176 + L1PB4 LINE L1 5961 6148 -8 511 204 0 26 chrX 32895087 32895200 -144078940 - L2 LINE L2 -1 3312 3203 6394 182 47 95 chrX 32895210 32897091 -144077049 + L1MC3 LINE L1 5988 7778 -7 485 285 96 34 chrX 32897126 32897417 -144076723 - L2 LINE L2 -177 3136 2828 227 302 123 22 chrX 32897537 32897716 -144076424 - MIR SINE MIR -29 233 37 249 33 0 0 chrX 32898053 32898083 -144076057 + (TG)n Simple_repeat Simple_repeat 1 30 0 205 182 0 0 chrX 32899246 32899279 -144074861 + (CA)n Simple_repeat Simple_repeat 2 34 0 298 267 289 0 chrX 32900100 32900235 -144073905 + MIR3 SINE MIR 34 207 -1 196 222 14 83 chrX 32900561 32900633 -144073507 - L2 LINE L2 -3 3269 3203 630 320 97 45 chrX 32901056 32901519 -144072621 - L2 LINE L2 -23 3290 2804 189 302 0 63 chrX 32901644 32901707 -144072433 - MIR SINE MIR -172 90 32 2835 118 31 2 chrX 32901845 32902261 -144071879 - MSTA LTR MaLR 0 428 1 2377 178 36 26 chrX 32902746 32903098 -144071042 + MLT1D LTR MaLR 1 361 -144 5646 78 78 0 chrX 32903098 32903864 -144070276 - LTR12 LTR ERV1 0 826 1 2377 178 36 26 chrX 32903864 32904011 -144070129 + MLT1D LTR MaLR 361 505 0 1724 194 7 3 chrX 32904895 32905188 -144068952 + AluJb SINE Alu 1 294 -18 2377 61 0 16 chrX 32905195 32905532 -144068608 + AluY SINE Alu 1 311 0 262 207 35 0 chrX 32905576 32905634 -144068506 + AluJ/monomer SINE Alu 234 293 -9 197 139 23 0 chrX 32906732 32906775 -144067365 + (CA)n Simple_repeat Simple_repeat 1 44 0 * 393 139 23 12 chrX 32906774 32906860 -144067280 + (TA)n Simple_repeat Simple_repeat 1 87 0 279 303 152 0 chrX 32906860 32906992 -144067148 + Charlie8 DNA MER1_type 58 209 -2208 1103 265 12 19 chrX 32907472 32907893 -144066247 + L2 LINE L2 2738 3156 -157 1407 145 11 25 chrX 32907893 32908175 -144065965 - Tigger6 DNA MER2_type -1 1596 1319 4218 145 38 43 chrX 32908180 32908558 -144065582 + L1MB4 LINE L1 5336 5715 -465 2068 125 13 16 chrX 32908558 32908863 -144065277 - AluSx SINE Alu -8 304 1 4218 145 38 43 chrX 32908863 32909334 -144064806 + L1MB4 LINE L1 5715 6180 0 2808 149 24 15 chrX 32909352 32909895 -144064245 + L1MA4A LINE L1 5575 6122 -181 390 163 12 0 chrX 32909898 32909978 -144064162 + L1MA4A LINE L1 6188 6268 -35 1906 179 5 18 chrX 32909978 32910370 -144063770 - Tigger6 DNA MER2_type -261 1336 950 241 263 0 0 chrX 32910565 32910641 -144063499 - Tigger3(Golem) DNA MER2_type -1515 1514 1439 1781 174 31 0 chrX 32910741 32911058 -144063082 - Tigger6 DNA MER2_type -756 327 1 622 234 14 21 chrX 32911060 32911205 -144062935 + L2 LINE L2 3160 3303 -10 217 250 0 0 chrX 32911209 32911257 -144062883 + GA-rich Low_complexity Low_complexity 3 50 0 201 325 100 0 chrX 32911259 32911339 -144062801 - MIR3 SINE MIR -40 168 81 786 125 6 30 chrX 32912190 32912358 -144061782 + (TTTC)n Simple_repeat Simple_repeat 2 165 0 390 95 12 107 chrX 32913270 32913354 -144060786 + MER91C DNA MER1_type 1 76 -64 347 283 104 9 chrX 32913461 32913567 -144060573 + L2 LINE L2 3156 3271 -1 1447 191 58 25 chrX 32914389 32914751 -144059389 + MLT1A2 LTR MaLR 1 374 0 496 269 196 12 chrX 32914775 32914973 -144059167 + MIR SINE MIR 13 248 -14 370 340 166 34 chrX 32916919 32917611 -144056529 + L2 LINE L2 2286 3064 -208 1808 227 48 10 chrX 32918127 32918607 -144055533 + L1MEc LINE L1 37 534 -5862 581 252 6 16 chrX 32918642 32918835 -144055305 + L1MA10 LINE L1 5979 6331 -3 1584 178 125 0 chrX 32919057 32919378 -144054762 - MLT1A1 LTR MaLR 0 365 5 1637 137 35 3 chrX 32920444 32920894 -144053246 + L1M2 LINE L1 5007 5468 -743 562 186 24 60 chrX 32921167 32921334 -144052806 + MLT1H LTR MaLR 1 161 -388 332 298 119 35 chrX 32921489 32921808 -144052332 + MLT1J1 LTR MaLR 78 423 -23 742 196 4 122 chrX 32921823 32922053 -144052087 + MER63A DNA MER1_type 8 210 0 293 234 16 16 chrX 32922264 32922328 -144051812 + L2 LINE L2 3205 3268 -4 238 123 0 46 chrX 32922466 32922531 -144051609 - L1MCa LINE L1 -4359 2067 2006 234 139 0 0 chrX 32922703 32922739 -144051401 + MIR SINE MIR 114 149 -59 2062 29 50 0 chrX 32922956 32923197 -144050943 - AluY SINE Alu -9 302 50 2257 108 0 0 chrX 32923335 32923632 -144050508 + AluSx SINE Alu 1 297 -15 2125 118 0 13 chrX 32924112 32924418 -144049722 + AluSx SINE Alu 1 302 -10 675 168 0 133 chrX 32924564 32924760 -144049380 - L1MB8 LINE L1 -78 6100 5931 * 3015 137 29 129 chrX 32924748 32925973 -144048167 - L1MA8 LINE L1 -210 6081 4982 2318 108 31 0 chrX 32925988 32926340 -144047800 - L1PA16 LINE L1 -2 6164 5802 1176 113 10 10 chrX 32926339 32926533 -144047607 + L1PA16 LINE L1 5620 5813 -353 * 1999 145 3 6 chrX 32926529 32926880 -144047260 - L1MA8 LINE L1 -1148 4998 4649 * 3799 121 10 80 chrX 32926879 32927692 -144046448 + L1MA8 LINE L1 3881 4636 -1510 1647 179 28 3 chrX 32927717 32928002 -144046138 - AluSx SINE Alu -20 292 1 2616 246 97 96 chrX 32929261 32929599 -144044541 + HAL1 LINE L1 99 435 -2072 2396 33 40 23 chrX 32929599 32929901 -144044239 - AluY SINE Alu -4 307 1 2616 246 97 96 chrX 32929901 32931047 -144043093 + HAL1 LINE L1 435 1589 -918 2278 101 3 7 chrX 32931047 32931354 -144042786 + AluSx SINE Alu 1 306 -6 2616 246 97 96 chrX 32931354 32931863 -144042277 + HAL1 LINE L1 1589 2096 -411 601 24 24 0 chrX 32931895 32931978 -144042162 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 308 282 0 0 chrX 32931983 32932086 -144042054 + L1ME1 LINE L1 4581 4683 -1463 1022 247 46 27 chrX 32933963 32934335 -144039805 + L1ME1 LINE L1 4677 5055 -1091 2539 155 32 4 chrX 32934387 32934891 -144039249 + L1MA7 LINE L1 5773 6290 -1 1561 138 109 37 chrX 32934966 32935315 -144038825 + THE1C LTR MaLR 1 374 -1 4003 109 15 63 chrX 32935319 32936037 -144038103 + THE1C-int LTR MaLR 4 687 -893 4279 62 7 0 chrX 32936065 32936629 -144037511 - HERVL LTR ERVL -2935 2719 2152 385 143 0 14 chrX 32936629 32936699 -144037441 + MSTA LTR MaLR 360 428 0 2514 74 0 0 chrX 32936724 32937034 -144037106 + AluY SINE Alu 2 311 0 2289 194 60 30 chrX 32937035 32937696 -144036444 + L1ME1 LINE L1 5196 5880 -286 2448 93 3 0 chrX 32937696 32938006 -144036134 + AluSp SINE Alu 1 311 -2 2289 194 60 30 chrX 32938006 32938066 -144036074 + L1ME1 LINE L1 5880 5937 -229 724 103 0 9 chrX 32938070 32938177 -144035963 - HERVL LTR ERVL -3391 2263 2158 677 212 22 22 chrX 32938245 32938424 -144035716 + L1ME1 LINE L1 5983 6161 -5 2207 258 97 30 chrX 32938430 32939266 -144034874 + L1ME LINE L1 3836 4829 -1317 1661 137 103 4 chrX 32939266 32939528 -144034612 + AluJo SINE Alu 1 288 -24 2207 258 97 30 chrX 32939528 32940076 -144034064 + L1ME LINE L1 4829 5339 -807 410 276 0 58 chrX 32940076 32940232 -144033908 + L1ME3 LINE L1 5928 6074 -88 358 258 95 0 chrX 32940305 32940523 -144033617 + L1ME LINE L1 5319 5558 -604 405 0 0 0 chrX 32940533 32940578 -144033562 + (TG)n Simple_repeat Simple_repeat 2 46 0 267 317 84 28 chrX 32940578 32940827 -144033313 + L1ME LINE L1 5615 5877 -287 1786 210 52 38 chrX 32941052 32941526 -144032614 + L1MC4a LINE L1 7267 7751 -57 3090 159 46 11 chrX 32941526 32942136 -144032004 - L1MB7 LINE L1 -17 6167 5537 1786 210 52 38 chrX 32942136 32942195 -144031945 + L1MC4a LINE L1 7751 7808 0 1673 249 89 8 chrX 32942361 32942875 -144031265 - MER21B LTR ERV1 -57 806 251 1288 211 26 73 chrX 32942876 32943259 -144030881 + MLT1A1 LTR MaLR 1 365 0 3835 202 101 143 chrX 32943259 32943787 -144030353 + MLT1A1-int LTR MaLR 1 550 -1185 1980 144 0 7 chrX 32943787 32944092 -144030048 + AluJb SINE Alu 1 303 -9 3835 202 101 143 chrX 32944092 32944260 -144029880 + MLT1A1-int LTR MaLR 550 724 -1011 1275 136 11 0 chrX 32944260 32944469 -144029671 + AluSg/x SINE Alu 96 306 0 3835 202 101 143 chrX 32944469 32945393 -144028747 + MLT1A1-int LTR MaLR 724 1730 -5 1270 219 27 59 chrX 32945400 32945775 -144028365 + MLT1A1 LTR MaLR 3 365 0 784 169 13 133 chrX 32945794 32946019 -144028121 - MER21B LTR ERV1 -646 217 20 310 295 0 0 chrX 32946039 32946117 -144028023 - MER21B LTR ERV1 -773 90 13 705 166 0 83 chrX 32946301 32946446 -144027694 + FLAM_C SINE Alu 1 133 0 318 106 0 0 chrX 32947990 32948008 -144026132 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 318 106 0 0 chrX 32948008 32948055 -144026085 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 296 24 24 0 chrX 32948297 32948338 -144025802 + (TC)n Simple_repeat Simple_repeat 2 43 0 426 20 0 0 chrX 32948339 32948390 -144025750 + (TG)n Simple_repeat Simple_repeat 2 52 0 338 298 8 57 chrX 32948707 32948831 -144025309 - L2 LINE L2 0 3313 3196 602 288 123 48 chrX 32949264 32949639 -144024501 - L2 LINE L2 -9 3304 2902 927 123 19 80 chrX 32951727 32951939 -144022201 + L1MA10 LINE L1 6129 6327 -7 267 357 70 35 chrX 32953423 32953566 -144020574 + L2 LINE L2 3125 3272 0 414 0 0 0 chrX 32954224 32954270 -144019870 + (CA)n Simple_repeat Simple_repeat 2 47 0 351 0 0 0 chrX 32955411 32955450 -144018690 + (TG)n Simple_repeat Simple_repeat 1 39 0 1278 85 0 40 chrX 32956311 32956386 -144017754 + L1PB1 LINE L1 5960 6036 -115 2427 76 3 0 chrX 32956386 32956687 -144017453 + AluY SINE Alu 1 302 -9 1278 85 0 40 chrX 32956687 32956810 -144017330 + L1PB1 LINE L1 6036 6150 -1 210 71 0 0 chrX 32956841 32956869 -144017271 + (A)n Simple_repeat Simple_repeat 1 28 0 293 280 28 37 chrX 32957641 32957748 -144016392 + MIR SINE MIR 80 185 -77 1217 115 46 9 chrX 32957776 32957993 -144016147 + L1MA9 LINE L1 6086 6310 -2 655 225 197 13 chrX 32958444 32959206 -144014934 - L1ME1 LINE L1 0 6166 5288 524 302 97 67 chrX 32961760 32962251 -144011889 + L2 LINE L2 2782 3306 -7 30 27 0 0 chrX 32963069 32963106 -144011034 + AT_rich Low_complexity Low_complexity 1 37 0 529 119 12 0 chrX 32963161 32963245 -144010895 - HY3 scRNA scRNA -6 95 11 700 266 58 19 chrX 32964485 32964692 -144009448 + MIR SINE MIR 33 247 -15 191 292 219 31 chrX 32964827 32965019 -144009121 - MIR SINE MIR -16 246 19 2225 104 27 0 chrX 32965651 32965771 -144008369 + AluSg SINE Alu 1 116 -194 184 30 61 0 chrX 32965771 32965804 -144008336 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2225 104 27 0 chrX 32965804 32965981 -144008159 + AluSg SINE Alu 116 306 -4 275 270 30 0 chrX 32966709 32966809 -144007331 - L2 LINE L2 -136 3177 3075 338 290 138 48 chrX 32967444 32967675 -144006465 + MIR SINE MIR 10 261 -1 997 204 51 0 chrX 32967720 32967955 -144006185 - MER46C DNA MER2_type -66 272 26 21 36 0 0 chrX 32970133 32970161 -144003979 + AT_rich Low_complexity Low_complexity 1 28 0 222 261 17 16 chrX 32974182 32974301 -143999839 + MIR SINE MIR 20 228 -34 299 336 26 0 chrX 32975495 32975608 -143998532 + MIR SINE MIR 34 149 -113 1705 162 37 4 chrX 32975743 32975862 -143998278 + AluJo SINE Alu 1 115 -197 306 0 0 0 chrX 32975862 32975896 -143998244 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1705 162 37 4 chrX 32975896 32976047 -143998093 + AluJo SINE Alu 115 280 -32 230 0 87 22 chrX 32976048 32976094 -143998046 + A-rich Low_complexity Low_complexity 2 50 0 207 278 0 42 chrX 32976557 32976629 -143997511 + G-rich Low_complexity Low_complexity 4 72 0 207 175 0 0 chrX 32978579 32978619 -143995521 + (TGG)n Simple_repeat Simple_repeat 1 40 0 489 233 9 0 chrX 32979658 32979774 -143994366 + L1MD2 LINE L1 6227 6343 -16 1178 190 289 33 chrX 32980090 32980499 -143993641 - HsTC2c DNA Tc2 0 729 226 2064 276 151 42 chrX 32980558 32981985 -143992155 - L2 LINE L2 0 3313 1716 283 339 191 6 chrX 32982008 32982176 -143991964 - L2 LINE L2 -1702 1612 1414 609 257 24 44 chrX 32982941 32983147 -143990993 + MIR SINE MIR 3 204 -58 25 65 0 0 chrX 32983316 32983362 -143990778 + AT_rich Low_complexity Low_complexity 1 46 0 227 271 29 29 chrX 32983594 32983664 -143990476 - MIR SINE MIR -66 142 73 2158 65 0 4 chrX 32983764 32984041 -143990099 + L1PA6 LINE L1 5875 6150 -4 5399 80 8 0 chrX 32984041 32984805 -143989335 + L1PA13 LINE L1 5394 6163 0 527 339 83 26 chrX 32984811 32985190 -143988950 + L2 LINE L2 2634 3046 -267 2491 54 0 16 chrX 32985481 32985794 -143988346 - AluY SINE Alu -3 308 1 350 0 44 0 chrX 32986621 32986666 -143987474 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 425 292 100 0 chrX 32988320 32988440 -143985700 - L2 LINE L2 0 3272 3141 351 0 0 0 chrX 32988562 32988601 -143985539 + (TG)n Simple_repeat Simple_repeat 2 40 0 207 178 67 22 chrX 32989186 32989231 -143984909 + L3 LINE CR1 1530 1576 -1 9436 197 60 10 chrX 32990445 32991378 -143982762 + L1M4 LINE L1 2697 3581 -2603 2014 162 89 13 chrX 32991378 32991773 -143982367 - MSTA LTR MaLR -3 425 1 9436 197 60 10 chrX 32991773 32993621 -143980519 + L1M4 LINE L1 3581 5624 -560 3675 96 277 0 chrX 32993621 32994268 -143979872 - LTR12 LTR ERV1 0 826 1 9436 197 60 10 chrX 32994268 32994284 -143979856 + L1M4 LINE L1 5624 5638 -546 599 296 103 0 chrX 32994520 32994723 -143979417 - MIR SINE MIR -37 225 2 3336 158 24 17 chrX 32994885 32995548 -143978592 - L1MA9 LINE L1 0 6312 5645 375 211 40 0 chrX 32995548 32995624 -143978516 + Tigger5 DNA MER2_type 1 79 -2244 4209 137 16 7 chrX 32995707 32996768 -143977372 - L1M2 LINE L1 -668 5644 4578 578 275 3 35 chrX 32996760 32997047 -143977093 - L1M3e LINE L1 -6263 767 490 * 1030 195 50 8 chrX 32997054 32997315 -143976825 - L1M2 LINE L1 -3210 2936 2665 4075 240 19 6 chrX 32997317 32998507 -143975633 + L1M4 LINE L1 4099 5304 -842 4042 263 68 35 chrX 32998509 32999929 -143974211 + L1PA10 LINE L1 128 1595 -5192 * 15041 187 18 5 chrX 32999923 33003794 -143970346 + L1PA10 LINE L1 2534 6734 -85 3667 87 19 4 chrX 33003794 33004292 -143969848 + L1PA10 LINE L1 6292 6817 -2 15041 187 18 5 chrX 33004292 33004378 -143969762 + L1PA10 LINE L1 6734 6817 -2 214 318 75 47 chrX 33004495 33004602 -143969538 + MIR SINE MIR 30 139 -69 4786 20 2 0 chrX 33004781 33005335 -143968805 + L1PA2 LINE L1 5601 6155 0 2325 96 7 0 chrX 33005419 33005720 -143968420 - AluY SINE Alu -8 303 1 186 156 0 0 chrX 33005829 33005874 -143968266 + (TGAG)n Simple_repeat Simple_repeat 4 48 0 236 216 20 0 chrX 33005874 33005925 -143968215 + GA-rich Low_complexity Low_complexity 1 52 0 698 197 73 132 chrX 33005940 33006311 -143967829 - MSTB1 LTR MaLR -83 349 1 285 29 0 0 chrX 33007002 33007036 -143967104 + (TG)n Simple_repeat Simple_repeat 1 34 0 191 88 29 0 chrX 33007087 33007121 -143967019 + (TTA)n Simple_repeat Simple_repeat 1 35 0 422 247 0 0 chrX 33008640 33008725 -143965415 + MER21B LTR ERV1 12 96 -767 2696 224 131 11 chrX 33008732 33009436 -143964704 + MER21B LTR ERV1 19 806 -57 205 189 0 0 chrX 33009523 33009560 -143964580 + (TG)n Simple_repeat Simple_repeat 2 38 0 464 213 85 85 chrX 33009742 33009930 -143964210 + MER5A DNA MER1_type 1 188 -1 1174 242 112 9 chrX 33010178 33010517 -143963623 + MLT1A2 LTR MaLR 1 374 0 961 188 0 0 chrX 33010658 33010818 -143963322 + MER44D DNA MER2_type 1 160 -545 503 204 0 0 chrX 33010967 33011055 -143963085 - MER44D DNA MER2_type 0 605 518 * 3322 156 16 7 chrX 33011050 33011615 -143962525 + MER44D DNA MER2_type 164 605 0 225 393 43 0 chrX 33011867 33012007 -143962133 - L2 LINE L2 -215 3057 2912 1306 285 40 7 chrX 33012034 33012455 -143961685 + LTR16A LTR ERVL 16 450 0 1763 172 63 3 chrX 33012609 33012987 -143961153 + L1MD3 LINE L1 7581 7981 -14 274 282 40 54 chrX 33012992 33013141 -143960999 - L2 LINE L2 -615 2699 2553 232 258 30 15 chrX 33013520 33013586 -143960554 - MER5A DNA MER1_type 0 189 123 200 333 39 26 chrX 33013578 33013656 -143960484 + MER5B DNA MER1_type 95 173 -5 * 613 261 22 18 chrX 33013825 33014047 -143960093 - L1ME3A LINE L1 -219 5951 5729 6844 186 53 34 chrX 33014161 33016214 -143957926 + L1MDa LINE L1 843 2929 -3611 1130 206 15 83 chrX 33016281 33016680 -143957460 + L1MDa LINE L1 4404 4775 -1765 1578 170 40 7 chrX 33016693 33016969 -143957171 + AluJo SINE Alu 13 297 -15 6992 181 19 21 chrX 33016970 33018331 -143955809 + L1MA2 LINE L1 19 1377 -6188 225 203 0 31 chrX 33018333 33018397 -143955743 + L1MA2 LINE L1 3661 3722 -3843 9654 147 39 129 chrX 33018398 33020458 -143953682 + L1MA2 LINE L1 3822 6067 -1656 2195 122 0 0 chrX 33020458 33020754 -143953386 - AluSx SINE Alu -16 296 1 9654 147 39 129 chrX 33020754 33021217 -143952923 + L1MA2 LINE L1 6067 6570 -1153 345 82 0 0 chrX 33021217 33021266 -143952874 + (CA)n Simple_repeat Simple_repeat 2 50 0 9654 147 39 129 chrX 33021266 33023050 -143951090 + L1MA2 LINE L1 6570 7721 -2 2448 215 78 27 chrX 33023068 33024255 -143949885 + L1MDa LINE L1 4771 6026 -610 566 223 57 0 chrX 33024275 33024432 -143949708 + L1MD2 LINE L1 6194 6359 0 698 243 39 19 chrX 33024619 33024825 -143949315 + MER63A DNA MER1_type 1 210 0 228 143 0 0 chrX 33024838 33024880 -143949260 + (TG)n Simple_repeat Simple_repeat 2 43 0 218 283 132 72 chrX 33025651 33025803 -143948337 + MIR SINE MIR 46 206 -56 382 261 322 4 chrX 33025859 33026089 -143948051 + L2 LINE L2 3011 3313 0 609 275 81 76 chrX 33026710 33027193 -143946947 - MLT1H LTR MaLR -1 548 25 492 241 157 63 chrX 33027246 33027437 -143946703 - MER63A DNA MER1_type -1 209 1 3562 256 44 34 chrX 33028275 33030389 -143943751 + L1M3e LINE L1 7 2886 -4220 3076 171 51 3 chrX 33030407 33030978 -143943162 + L1M3e LINE L1 3595 4204 -2902 2186 100 23 7 chrX 33030978 33031279 -143942861 + AluSq SINE Alu 1 306 -7 3076 171 51 3 chrX 33031279 33031379 -143942761 + L1M3e LINE L1 4204 4298 -2808 6746 208 125 119 chrX 33031380 33033289 -143940851 + L1MA8 LINE L1 3 1933 -4916 2617 132 31 5 chrX 33033289 33033705 -143940435 - MSTA LTR MaLR 0 428 2 6746 208 125 119 chrX 33033705 33034635 -143939505 + L1MA8 LINE L1 1933 2857 -3992 528 70 0 0 chrX 33034638 33034709 -143939431 + MADE1 DNA Mariner 1 71 -9 931 191 9 22 chrX 33034710 33034941 -143939199 + L1MA8 LINE L1 2865 3092 -3756 * 957 178 23 46 chrX 33034939 33035158 -143938982 + L1MA8 LINE L1 3328 3541 -3307 * 5350 141 28 27 chrX 33035132 33035252 -143938888 + L1MA8 LINE L1 5062 5180 -1822 1668 178 20 17 chrX 33035252 33035544 -143938596 + AluJb SINE Alu 1 293 -19 5350 141 28 27 chrX 33035544 33035807 -143938333 + L1MA8 LINE L1 5180 5441 -1561 800 111 24 8 chrX 33035807 33035933 -143938207 + FLAM_C SINE Alu 1 128 -5 5350 141 28 27 chrX 33035933 33037455 -143936685 + L1MA8 LINE L1 5441 7001 -1 513 176 331 0 chrX 33037738 33037874 -143936266 + MER5A DNA MER1_type 9 189 0 431 221 63 0 chrX 33039315 33039410 -143934730 + L2 LINE L2 3212 3312 -1 348 251 49 137 chrX 33039813 33040120 -143934020 + L1ME4a LINE L1 5304 5583 -2225 337 301 9 0 chrX 33040216 33040329 -143933811 + L1ME4a LINE L1 5725 5838 -283 245 222 0 0 chrX 33040876 33040921 -143933219 + L2 LINE L2 3257 3301 -12 1385 230 39 48 chrX 33041967 33042078 -143932062 - L1MC4 LINE L1 -32 8010 7899 306 0 0 0 chrX 33042078 33042112 -143932028 + (TA)n Simple_repeat Simple_repeat 2 35 0 1385 230 39 48 chrX 33042112 33042435 -143931705 - L1MC4 LINE L1 -143 7899 7580 4482 100 43 4 chrX 33042486 33043187 -143930953 - L1MA3 LINE L1 0 6305 5578 544 196 55 55 chrX 33043191 33043390 -143930750 - L1MC4 LINE L1 -452 7590 7392 1340 254 83 10 chrX 33043397 33043795 -143930345 - L1MC4 LINE L1 -1940 5868 5442 329 277 104 9 chrX 33043799 33044019 -143930121 - L1MC4 LINE L1 -2304 5504 5264 360 284 28 66 chrX 33044055 33044127 -143930013 - L1MC4 LINE L1 -905 5241 5168 1897 151 35 0 chrX 33044127 33044465 -143929675 - L1MA9 LINE L1 0 6312 5963 360 284 28 66 chrX 33044465 33044603 -143929537 - L1MC4 LINE L1 -978 5168 5039 799 302 24 41 chrX 33044711 33045006 -143929134 - LTR16A1 LTR ERVL 0 457 168 338 340 58 6 chrX 33045763 33045919 -143928221 + MIR SINE MIR 65 228 -34 627 345 110 46 chrX 33045939 33046400 -143927740 + L2 LINE L2 215 645 -2669 1764 67 14 9 chrX 33046400 33046623 -143927517 - AluY SINE Alu -9 302 79 627 345 110 46 chrX 33046623 33046749 -143927391 + L2 LINE L2 645 761 -2553 2208 137 33 0 chrX 33046749 33047086 -143927054 - MER7A DNA MER2_type 0 346 1 627 345 110 46 chrX 33047086 33047148 -143926992 + L2 LINE L2 761 818 -2496 2310 95 3 0 chrX 33047148 33047444 -143926696 - AluSq SINE Alu -16 297 1 627 345 110 46 chrX 33047444 33048449 -143925691 + L2 LINE L2 818 1978 -1336 9874 210 15 10 chrX 33048466 33049954 -143924186 + L1P4 LINE L1 3078 4587 -1579 2025 106 64 22 chrX 33049954 33050313 -143923827 - THE1C LTR MaLR 0 375 2 9874 210 15 10 chrX 33050313 33051171 -143922969 + L1P4 LINE L1 4587 5439 -727 5116 162 15 10 chrX 33051166 33052526 -143921614 + L1MB5 LINE L1 4801 6166 -8 * 334 364 83 20 chrX 33052537 33052839 -143921301 + L2 LINE L2 2376 2696 -618 1137 172 0 5 chrX 33052852 33053038 -143921102 - MER5A DNA MER1_type -3 186 2 268 298 65 16 chrX 33053192 33053316 -143920824 - LTR67 LTR ERVL 0 557 428 431 169 60 12 chrX 33053409 33053492 -143920648 - Tigger5 DNA MER2_type -1 2322 2236 * 1277 245 0 0 chrX 33053486 33053719 -143920421 - Tigger5 DNA MER2_type -2090 233 1 405 346 79 0 chrX 33054022 33054149 -143919991 + L2 LINE L2 3136 3272 0 2157 242 24 17 chrX 33054408 33054983 -143919157 - L1ME1 LINE L1 -8 6227 5649 6588 247 63 19 chrX 33054984 33057301 -143916839 + L1MB8 LINE L1 3 2409 -4550 243 260 10 58 chrX 33057466 33057570 -143916570 + L1MB8 LINE L1 2476 2574 -4564 1465 175 29 92 chrX 33057655 33058100 -143916040 + L1MB8 LINE L1 4416 4832 -2125 * 3242 209 34 12 chrX 33058092 33058821 -143915319 + L1MB8 LINE L1 6239 6983 -6 3605 219 70 28 chrX 33058857 33060224 -143913916 - L1ME1 LINE L1 -577 5658 4238 1839 223 90 14 chrX 33060213 33060895 -143913245 - L1ME1 LINE L1 -3666 2549 1866 * 556 274 7 59 chrX 33060896 33060958 -143913182 + MER58A DNA MER1_type 1 65 -276 2179 118 0 0 chrX 33060958 33061247 -143912893 - AluSx SINE Alu -23 289 1 556 274 7 59 chrX 33061247 33061337 -143912803 + MER58A DNA MER1_type 65 145 -79 2099 182 60 24 chrX 33061342 33061755 -143912385 + MSTA LTR MaLR 1 428 0 4164 164 9 25 chrX 33061755 33061897 -143912243 + MSTA-int LTR MaLR 1 144 -1507 2223 107 7 0 chrX 33061897 33062195 -143911945 - AluSc SINE Alu -9 300 1 4164 164 9 25 chrX 33062195 33062807 -143911333 + MSTA-int LTR MaLR 144 743 -908 * 5339 161 9 31 chrX 33062795 33063728 -143910412 - MST-int LTR MaLR -4 1647 736 563 162 6 0 chrX 33063731 33063833 -143910307 + MSTA-int LTR MaLR 1288 1462 -186 356 162 0 15 chrX 33063825 33063893 -143910247 + MSTA-int LTR MaLR 1585 1651 0 * 2113 174 61 15 chrX 33063893 33064302 -143909838 + MSTA LTR MaLR 1 428 0 289 250 28 0 chrX 33064304 33064376 -143909764 + MER58A DNA MER1_type 149 222 -2 2358 259 61 15 chrX 33064382 33065397 -143908743 - L1ME1 LINE L1 -4532 1864 803 492 88 9 115 chrX 33065486 33065599 -143908541 - THE1C-int LTR MaLR -1546 105 5 1832 158 41 19 chrX 33065603 33065969 -143908171 - THE1C LTR MaLR 0 375 2 2289 248 47 6 chrX 33065973 33066506 -143907634 + MER76 LTR ERV 134 688 0 358 198 62 12 chrX 33066506 33066585 -143907555 - MLT1H LTR MaLR -329 220 138 257 316 107 8 chrX 33066836 33067080 -143907060 - L2 LINE L2 0 3313 3046 1626 209 46 0 chrX 33067185 33067534 -143906606 + MLT1A1 LTR MaLR 1 365 0 2042 95 20 48 chrX 33070209 33070566 -143903574 - L1MA2 LINE L1 0 6304 5958 12062 170 59 20 chrX 33070583 33074265 -143899875 - L1MA2 LINE L1 -242 7481 3465 1705 196 3 3 chrX 33074265 33074571 -143899569 - AluJb SINE Alu -6 306 1 12062 170 59 20 chrX 33074571 33076407 -143897733 - L1MA2 LINE L1 -4258 3465 1703 801 203 16 22 chrX 33076418 33076600 -143897540 - L1M1 LINE L1 -7147 418 238 352 105 18 0 chrX 33076614 33076671 -143897469 - L1M4b LINE L1 -5564 1295 1238 1904 248 52 14 chrX 33076676 33077115 -143897025 - L1M4b LINE L1 -6403 456 1 277 315 0 0 chrX 33077118 33077210 -143896930 - L1MEd LINE L1 -5965 154 63 273 389 54 57 chrX 33077228 33077508 -143896632 + L2 LINE L2 2994 3272 0 16697 135 42 7 chrX 33077602 33080225 -143893915 - Tigger2 DNA MER2_type -2 2716 2 1452 221 39 28 chrX 33080383 33080812 -143893328 - MER74A LTR ERVL -35 523 9 307 51 0 0 chrX 33081847 33081886 -143892254 - MER74C LTR ERVL -418 42 4 1168 261 80 62 chrX 33082139 33082183 -143891957 + MLT1J LTR MaLR 1 43 -468 468 0 0 0 chrX 33082183 33082235 -143891905 + (TG)n Simple_repeat Simple_repeat 1 52 0 1168 261 80 62 chrX 33082235 33082692 -143891448 + MLT1J LTR MaLR 43 511 0 1453 97 0 0 chrX 33082720 33082905 -143891235 - AluSq SINE Alu -128 185 1 2311 87 0 3 chrX 33083092 33083390 -143890750 + AluSc SINE Alu 1 297 -12 239 315 14 0 chrX 33083539 33083612 -143890528 - MIR SINE MIR -16 246 173 266 105 0 0 chrX 33083614 33083652 -143890488 - tRNA-Leu-TTG tRNA tRNA -48 38 1 335 276 194 15 chrX 33083654 33083788 -143890352 - MIR SINE MIR -76 186 29 1707 217 86 9 chrX 33084491 33084920 -143889220 - LTR40b LTR ERVL 0 462 1 786 274 67 80 chrX 33085512 33085931 -143888209 + L2 LINE L2 946 1360 -1954 1039 184 39 67 chrX 33085931 33086213 -143887927 + ORSL DNA AcHobo 2 275 0 786 274 67 80 chrX 33086213 33086268 -143887872 + L2 LINE L2 1360 1414 -1900 334 118 0 20 chrX 33086350 33086401 -143887739 - MER20 DNA MER1_type 0 219 170 180 328 0 35 chrX 33086661 33086719 -143887421 + L3 LINE CR1 1515 1570 -7 831 217 17 29 chrX 33087430 33087605 -143886535 + MER58B DNA MER1_type 169 341 0 599 233 61 0 chrX 33087696 33087859 -143886281 - MER5B DNA MER1_type -4 174 2 189 0 0 0 chrX 33088054 33088075 -143886065 + (CATA)n Simple_repeat Simple_repeat 2 22 0 332 318 9 0 chrX 33088204 33088311 -143885829 + L2 LINE L2 2280 2387 -927 792 200 7 0 chrX 33088327 33088477 -143885663 + L1MB7 LINE L1 16 166 -6376 296 252 47 47 chrX 33088451 33088558 -143885582 + L1MA2 LINE L1 1 107 -7458 * 6714 72 3 0 chrX 33088560 33090018 -143884122 + L1PA13 LINE L1 4696 6157 -6 354 119 373 104 chrX 33090110 33090244 -143883896 + L1MA2 LINE L1 96 265 -7300 13952 155 110 7 chrX 33090267 33095489 -143878651 + L1MA2 LINE L1 1078 6878 -743 2606 107 3 8 chrX 33095489 33095855 -143878285 + THE1B LTR MaLR 1 364 0 2250 107 3 0 chrX 33095897 33096196 -143877944 + THE1B LTR MaLR 65 364 0 5884 79 11 16 chrX 33096198 33096576 -143877564 + L1MA2 LINE L1 6871 7250 -473 2444 97 0 0 chrX 33096576 33096887 -143877253 + AluSx SINE Alu 1 311 -1 5884 79 11 16 chrX 33096887 33097366 -143876774 + L1MA2 LINE L1 7250 7723 0 522 212 0 109 chrX 33097384 33097549 -143876591 + L1MB7 LINE L1 1074 1220 -6243 * 1871 216 57 7 chrX 33097547 33098053 -143876087 + L1MB7 LINE L1 1571 2251 -5216 790 265 40 0 chrX 33098095 33098381 -143875759 + L1MB7 LINE L1 3519 3815 -3750 5962 121 9 4 chrX 33098581 33099513 -143874627 - L1MA5 LINE L1 -3 6297 5362 641 188 7 0 chrX 33099511 33099649 -143874491 + L1MB7 LINE L1 3803 3941 -3624 * 516 219 0 0 chrX 33099649 33099745 -143874395 - AluSx SINE Alu -12 298 203 877 146 0 0 chrX 33099745 33099868 -143874272 - AluSx SINE Alu -189 123 1 4464 234 28 24 chrX 33099869 33100022 -143874118 + L1MB7 LINE L1 3931 4082 -3483 2000 177 14 22 chrX 33100022 33100390 -143873750 - MLT1A1 LTR MaLR 0 365 1 8785 192 20 44 chrX 33100390 33102168 -143871972 - MLT1A1-int LTR MaLR 0 1735 1 2082 176 14 0 chrX 33102168 33102525 -143871615 - MLT1A1 LTR MaLR 0 365 4 4464 234 28 24 chrX 33102525 33102913 -143871227 + L1MB7 LINE L1 4082 4467 -3098 2272 119 0 0 chrX 33102913 33103223 -143870917 + AluSx SINE Alu 1 310 -2 4464 234 28 24 chrX 33103223 33103990 -143870150 + L1MB7 LINE L1 4467 5248 -2317 * 4883 172 40 18 chrX 33103986 33104932 -143869208 + L1MB7 LINE L1 6331 7326 -277 3747 114 15 0 chrX 33104932 33105451 -143868689 + MER1A DNA MER1_type 1 527 0 4883 172 40 18 chrX 33105451 33105736 -143868404 + L1MB7 LINE L1 7326 7603 0 435 333 102 17 chrX 33105750 33106044 -143868096 + L2 LINE L2 2387 2705 -609 2496 250 109 27 chrX 33106065 33107239 -143866901 - L1ME3A LINE L1 -8 6162 4885 267 288 0 0 chrX 33108373 33108432 -143865708 + L2 LINE L2 3248 3306 -7 21 57 0 0 chrX 33108665 33108700 -143865440 + AT_rich Low_complexity Low_complexity 1 35 0 492 275 119 29 chrX 33109221 33109465 -143864675 + LTR33 LTR ERVL 45 310 -211 207 0 0 0 chrX 33110719 33110742 -143863398 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6378 222 73 79 chrX 33110751 33110883 -143863257 + L1MEc LINE L1 34 165 -6050 2585 163 38 65 chrX 33110883 33111410 -143862730 - MLT2B2 LTR ERVL -2 513 1 6378 222 73 79 chrX 33111410 33111742 -143862398 + L1MEc LINE L1 165 498 -5717 754 141 0 0 chrX 33111742 33111877 -143862263 + L1MA8 LINE L1 6146 6280 -11 6378 222 73 79 chrX 33111877 33113810 -143860330 + L1MEc LINE L1 498 2369 -3846 4409 134 12 8 chrX 33113810 33114540 -143859600 + L1PB4 LINE L1 5417 6149 -7 6378 222 73 79 chrX 33114540 33115804 -143858336 + L1MEc LINE L1 2369 3639 -2576 13124 204 38 26 chrX 33115951 33121439 -143852701 + L1PB1 LINE L1 6 5621 -1241 2044 65 0 0 chrX 33121458 33121720 -143852420 - L1PA6 LINE L1 0 6154 5893 6091 106 2 1 chrX 33121720 33122982 -143851158 + L1PB1 LINE L1 5607 6867 0 5927 195 72 31 chrX 33122991 33124614 -143849526 + L1MEc LINE L1 3646 5356 -879 306 0 0 0 chrX 33124614 33124648 -143849492 + (CA)n Simple_repeat Simple_repeat 2 35 0 5927 195 72 31 chrX 33124648 33125058 -143849082 + L1MEc LINE L1 5356 5748 -487 6115 98 24 17 chrX 33125073 33126235 -143847905 - L1PB3 LINE L1 -5 6149 4983 12947 213 29 12 chrX 33126230 33130852 -143843288 + L1PA16 LINE L1 1625 6164 -2 831 324 72 30 chrX 33131045 33131545 -143842595 - LTR33 LTR ERVL 0 521 1 2956 118 24 9 chrX 33131955 33132831 -143841309 - THE1C-int LTR MaLR -652 928 1 2260 117 53 11 chrX 33132831 33133191 -143840949 - THE1C LTR MaLR 0 375 1 192 158 0 0 chrX 33133662 33133700 -143840440 + C-rich Low_complexity Low_complexity 1 38 0 286 250 228 0 chrX 33134694 33134786 -143839354 + MER5A DNA MER1_type 77 189 0 21 0 0 0 chrX 33134910 33134931 -143839209 + AT_rich Low_complexity Low_complexity 1 21 0 1123 204 35 0 chrX 33135214 33135445 -143838695 + Charlie1 DNA MER1_type 1 239 -2522 716 157 37 0 chrX 33135432 33135566 -143838574 + Charlie1 DNA MER1_type 2623 2761 0 * 254 268 0 42 chrX 33135662 33135733 -143838407 - L2 LINE L2 -2 3270 3203 344 102 0 17 chrX 33135733 33135792 -143838348 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 288 329 0 0 chrX 33135900 33135976 -143838164 - MER5B DNA MER1_type -100 78 3 28 29 0 0 chrX 33136723 33136758 -143837382 + AT_rich Low_complexity Low_complexity 1 35 0 452 293 35 0 chrX 33137370 33137486 -143836654 - L2 LINE L2 -5 3267 3148 204 347 0 14 chrX 33137637 33137709 -143836431 - L2 LINE L2 -236 3036 2966 548 340 158 23 chrX 33138030 33138548 -143835592 + L3 LINE CR1 616 1203 -374 23 0 0 0 chrX 33138745 33138768 -143835372 + AT_rich Low_complexity Low_complexity 1 23 0 2248 96 0 3 chrX 33138855 33139146 -143834994 - AluSx SINE Alu -14 298 9 1750 130 0 0 chrX 33139147 33139432 -143834708 - L1P LINE L1 -1681 4465 4181 701 250 60 6 chrX 33139788 33139956 -143834184 + MER5A DNA MER1_type 13 189 0 1469 175 35 6 chrX 33140052 33140366 -143833774 - MER45B DNA AcHobo 0 1040 718 1359 291 32 32 chrX 33140475 33140942 -143833198 - MER45C DNA AcHobo -189 764 298 * 1558 265 65 0 chrX 33140928 33141340 -143832800 - MER45C DNA AcHobo -514 439 1 486 336 101 34 chrX 33141454 33141892 -143832248 + L2 LINE L2 2804 3270 -2 24 0 0 0 chrX 33142309 33142333 -143831807 + AT_rich Low_complexity Low_complexity 1 24 0 792 199 61 51 chrX 33143115 33143311 -143830829 + MIR SINE MIR 1 198 -64 2841 260 19 32 chrX 33143349 33144171 -143829969 + L1M3c LINE L1 1 812 -5329 2459 89 17 1 chrX 33144199 33144658 -143829482 - L1P4 LINE L1 -550 5615 5149 3291 125 10 0 chrX 33144658 33145149 -143828991 + L1PA15 LINE L1 5661 6160 -5 4136 131 8 22 chrX 33145149 33145854 -143828286 + L1MA6 LINE L1 5601 6300 0 2349 67 0 7 chrX 33145916 33146214 -143827926 - AluY SINE Alu -15 296 1 725 262 27 23 chrX 33146293 33146514 -143827626 + MLT1H LTR MaLR 79 300 -249 353 156 0 0 chrX 33146634 33146698 -143827442 + MLT1H LTR MaLR 483 546 -3 1025 154 21 113 chrX 33146723 33146918 -143827222 + MER20 DNA MER1_type 2 173 -46 2371 92 10 0 chrX 33146918 33147223 -143826917 + AluSx SINE Alu 1 308 -4 1025 154 21 113 chrX 33147223 33147267 -143826873 + MER20 DNA MER1_type 173 219 0 242 123 18 0 chrX 33147272 33147329 -143826811 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 21 0 0 0 chrX 33147387 33147408 -143826732 + AT_rich Low_complexity Low_complexity 1 21 0 195 208 38 57 chrX 33149523 33149576 -143824564 + L2 LINE L2 3253 3304 -9 478 266 28 21 chrX 33150282 33150425 -143823715 + MIR SINE MIR 16 159 -103 1857 207 32 36 chrX 33150425 33150894 -143823246 - MLT1C LTR MaLR 0 467 1 1345 268 66 77 chrX 33151284 33151918 -143822222 + L1MDb LINE L1 141 767 -5776 3447 212 54 42 chrX 33151921 33153297 -143820843 + L1MDb LINE L1 601 1991 -4549 270 229 14 14 chrX 33153297 33153367 -143820773 + L1MDb LINE L1 1931 2000 -4540 17626 143 34 2 chrX 33153367 33156308 -143817832 + L1M1 LINE L1 12 3046 -4519 2303 75 3 0 chrX 33156308 33156590 -143817550 + AluSg SINE Alu 14 296 -14 6910 58 10 1 chrX 33156590 33157908 -143816232 + L1PA6 LINE L1 4829 6154 0 2016 165 21 16 chrX 33157915 33158340 -143815800 + L1MD1 LINE L1 5816 6242 0 520 179 34 102 chrX 33159904 33160045 -143814095 - LTR37B LTR ERV1 0 468 348 2188 99 0 3 chrX 33160045 33160327 -143813813 + AluSq SINE Alu 21 301 -12 520 179 34 102 chrX 33160327 33160420 -143813720 - LTR37B LTR ERV1 -120 348 250 553 211 16 53 chrX 33160507 33160583 -143813557 - LTR37B LTR ERV1 -279 189 112 948 165 74 0 chrX 33160583 33160759 -143813381 + MER5A DNA MER1_type 1 189 0 553 211 16 53 chrX 33160759 33160872 -143813268 - LTR37B LTR ERV1 -356 112 7 653 241 51 0 chrX 33161173 33161331 -143812809 - MER58A DNA MER1_type -50 174 9 486 291 13 6 chrX 33161374 33161532 -143812608 - MLT1I LTR MaLR -250 159 1 696 352 88 30 chrX 33161868 33162643 -143811497 + L2 LINE L2 1823 2642 -672 1984 72 25 4 chrX 33163199 33163475 -143810665 - L1PB1 LINE L1 -1 6150 5869 1530 222 0 13 chrX 33163488 33163803 -143810337 - MER74B LTR ERVL -250 372 62 411 21 0 0 chrX 33163923 33163971 -143810169 + (TG)n Simple_repeat Simple_repeat 1 48 0 680 306 121 3 chrX 33164086 33164449 -143809691 + L1MEd LINE L1 120 525 -5594 309 295 33 25 chrX 33164450 33164572 -143809568 + MLT1I LTR MaLR 2 124 -285 5651 116 9 4 chrX 33164739 33165935 -143808205 - L1PA16 LINE L1 -3 6163 4960 2323 102 64 3 chrX 33165935 33166278 -143807862 - THE1B LTR MaLR 0 364 1 5651 116 9 4 chrX 33166278 33166291 -143807849 - L1PA16 LINE L1 -1206 4960 4949 279 222 0 0 chrX 33166307 33166370 -143807770 + MLT1I LTR MaLR 308 370 -39 225 0 0 0 chrX 33166403 33166428 -143807712 + (CA)n Simple_repeat Simple_repeat 2 26 0 15529 182 34 7 chrX 33166708 33169719 -143804421 + L1M1 LINE L1 20 3112 -4453 3109 195 43 8 chrX 33169721 33171264 -143802876 + L1PA8 LINE L1 4505 6158 -14 699 128 23 76 chrX 33171307 33171479 -143802661 + L1M1 LINE L1 3123 3285 -4280 443 191 20 34 chrX 33171526 33171673 -143802467 + L1MA7 LINE L1 6140 6284 -7 239 354 10 56 chrX 33171689 33171884 -143802256 + L1MEd LINE L1 562 747 -5372 9768 164 14 1 chrX 33171972 33174817 -143799323 + L1MA1 LINE L1 2768 5649 -1916 6699 124 14 27 chrX 33174876 33176576 -143797564 + L1MA1 LINE L1 6037 7714 -7 1030 159 18 12 chrX 33176578 33176748 -143797392 + AluJo SINE Alu 120 290 -22 405 317 19 29 chrX 33176774 33176982 -143797158 + L1MEd LINE L1 899 1104 -5206 273 208 8 64 chrX 33177114 33177239 -143796901 + L1MEd LINE L1 1280 1397 -4913 1520 156 8 0 chrX 33177683 33177927 -143796213 - L1PB3 LINE L1 -1 6153 5908 354 156 10 73 chrX 33177975 33178071 -143796069 - MER5C DNA MER1_type -2 322 233 519 252 42 0 chrX 33178099 33178218 -143795922 - MER5C DNA MER1_type -200 124 1 2544 52 3 3 chrX 33178691 33179001 -143795139 - AluY SINE Alu -1 310 1 463 256 33 0 chrX 33179948 33180069 -143794071 - MER103 DNA DNA -16 150 26 24 0 0 0 chrX 33180098 33180122 -143794018 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chrX 33180224 33180260 -143793880 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chrX 33180313 33180364 -143793776 + AT_rich Low_complexity Low_complexity 1 51 0 721 246 19 0 chrX 33180384 33180595 -143793545 + L1MEd LINE L1 2316 2530 -3599 742 134 16 0 chrX 33180603 33180730 -143793410 - L1PA15 LINE L1 -5 6160 6032 1792 98 0 45 chrX 33180730 33180976 -143793164 - AluSc SINE Alu -74 235 1 6488 226 81 10 chrX 33180976 33183044 -143791096 - L1PA12 LINE L1 -2571 5013 2777 2331 150 0 0 chrX 33184258 33184657 -143789483 - L1P LINE L1 -914 5232 4834 743 103 29 22 chrX 33184657 33184793 -143789347 + L1P LINE L1 5226 5362 -784 305 185 0 0 chrX 33184800 33184865 -143789275 + L1PA11 LINE L1 6110 6174 0 25 31 0 0 chrX 33185136 33185168 -143788972 + AT_rich Low_complexity Low_complexity 1 32 0 5853 105 6 1 chrX 33185168 33185691 -143788449 + L1PA11 LINE L1 5293 5823 -351 186 43 0 0 chrX 33185691 33185714 -143788426 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5853 105 6 1 chrX 33185714 33186068 -143788072 + L1PA11 LINE L1 5823 6174 0 1885 126 47 9 chrX 33186418 33186736 -143787404 - MER4D LTR ERV1 -569 334 5 2373 119 57 28 chrX 33186738 33187175 -143786965 + LTR7 LTR ERV1 1 450 0 374 278 113 0 chrX 33187201 33187334 -143786806 - Charlie7 DNA MER1_type -2430 182 35 31 0 0 0 chrX 33187841 33187872 -143786268 + AT_rich Low_complexity Low_complexity 1 31 0 1043 267 74 56 chrX 33188266 33188455 -143785685 - MLT1E LTR MaLR -58 535 351 216 0 0 0 chrX 33188455 33188479 -143785661 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1421 203 25 7 chrX 33188481 33188757 -143785383 - AluJo SINE Alu -31 281 1 1043 267 74 56 chrX 33188757 33189055 -143785085 - MLT1E LTR MaLR -242 351 1 2257 121 3 0 chrX 33189341 33189639 -143784501 + AluSx SINE Alu 2 300 -12 289 66 33 33 chrX 33189915 33189976 -143784164 + (TTTTTG)n Simple_repeat Simple_repeat 2 62 0 1891 69 0 9 chrX 33189977 33190208 -143783932 - AluY SINE Alu -82 229 1 2825 251 47 1 chrX 33190295 33190995 -143783145 + L1M3b LINE L1 507 1238 -5541 3507 227 37 41 chrX 33191093 33192049 -143782091 + L1M3b LINE L1 1086 2037 -4742 2353 183 8 6 chrX 33192048 33192566 -143781574 + L1 LINE L1 4219 4737 -1409 * 881 229 13 20 chrX 33192564 33192967 -143781173 + L1M3b LINE L1 2024 2425 -4424 * 2443 165 16 12 chrX 33192967 33193391 -143780749 + MSTB LTR MaLR 1 426 0 9475 164 11 11 chrX 33193391 33195042 -143779098 + MSTB-int LTR MaLR 1 1651 0 872 144 14 7 chrX 33195042 33195188 -143778952 + MSTB LTR MaLR 1 147 -279 627 106 8 98 chrX 33195186 33195309 -143778831 + MSTB LTR MaLR 315 426 -2 * 13673 192 42 18 chrX 33195313 33196470 -143777670 + L1MA7 LINE L1 2816 3945 -3765 2004 127 3 10 chrX 33196470 33196761 -143777379 + AluSq SINE Alu 3 291 -22 13673 192 42 18 chrX 33196761 33197068 -143777072 + L1MA7 LINE L1 3945 4243 -3467 4228 120 9 14 chrX 33197068 33197724 -143776416 + L1PA15 LINE L1 5512 6164 -1 13673 192 42 18 chrX 33197724 33200803 -143773337 + L1MA7 LINE L1 4243 7475 -235 504 149 30 45 chrX 33200814 33200930 -143773210 + L1MA7 LINE L1 7576 7707 -3 361 295 23 54 chrX 33200986 33201115 -143773025 - LTR16C LTR ERVL -282 209 85 465 299 0 6 chrX 33202075 33202239 -143771901 + MER103 DNA DNA 4 166 0 627 339 28 0 chrX 33202696 33202914 -143771226 + MER115 DNA AcHobo 53 276 -417 232 211 19 0 chrX 33202987 33203039 -143771101 + MER115 DNA AcHobo 388 440 -253 266 250 0 0 chrX 33203057 33203113 -143771027 + Zaphod DNA AcHobo 3976 4031 0 199 293 73 65 chrX 33204204 33204228 -143769912 + MER5A DNA MER1_type 38 60 -129 767 205 94 0 chrX 33204228 33204399 -143769741 - MER5A DNA MER1_type -2 187 1 199 293 73 65 chrX 33204399 33204497 -143769643 + MER5A DNA MER1_type 60 161 -28 208 234 0 16 chrX 33204685 33204749 -143769391 + (TTTG)n Simple_repeat Simple_repeat 1 63 0 687 190 0 0 chrX 33204993 33205109 -143769031 - FLAM_A SINE Alu -7 135 20 2182 179 47 2 chrX 33205431 33205860 -143768280 + L1MA4A LINE L1 4857 5312 -834 408 20 0 0 chrX 33205860 33205909 -143768231 + (CA)n Simple_repeat Simple_repeat 2 50 0 2182 179 47 2 chrX 33205909 33205966 -143768174 + L1MA4A LINE L1 5312 5365 -781 5760 98 39 2 chrX 33207477 33208369 -143765771 + L1MA4A LINE L1 5352 6276 -27 498 274 40 8 chrX 33208695 33208872 -143765268 - MLT1J2 LTR MaLR -32 418 238 1832 155 39 18 chrX 33208950 33209338 -143764802 - L1MA7 LINE L1 -2 6289 5894 2463 158 24 0 chrX 33209339 33209796 -143764344 - L1MA7 LINE L1 -542 5749 5282 20879 162 16 14 chrX 33209831 33217519 -143756621 - L1MA3 LINE L1 -3 7721 22 2755 195 12 48 chrX 33217519 33217984 -143756156 - L1MA7 LINE L1 -871 5275 4795 1977 147 128 8 chrX 33217984 33218366 -143755774 - MSTA LTR MaLR 0 428 1 9385 129 22 36 chrX 33218366 33219966 -143754174 - MSTA-int LTR MaLR 0 1580 3 1875 168 119 13 chrX 33219968 33220355 -143753785 - MSTA LTR MaLR 0 428 1 2755 195 12 48 chrX 33220355 33220620 -143753520 - L1MA7 LINE L1 -1351 4795 4567 499 236 61 0 chrX 33220625 33220773 -143753367 - MLT1J2 LTR MaLR -285 165 9 1618 213 35 32 chrX 33220804 33220845 -143753295 - MLT1C LTR MaLR 0 467 428 2107 149 58 31 chrX 33220845 33221262 -143752878 + MSTA LTR MaLR 1 428 0 1618 213 35 32 chrX 33221262 33221681 -143752459 - MLT1C LTR MaLR -39 428 6 656 179 150 8 chrX 33221699 33222152 -143751988 - MLT1E1 LTR MaLR -64 590 1 2239 126 0 0 chrX 33222224 33222526 -143751614 + AluSq SINE Alu 1 302 -11 2004 121 170 16 chrX 33223088 33223459 -143750681 - MSTA LTR MaLR 0 428 1 526 232 28 66 chrX 33223636 33223817 -143750323 - MER96 DNA MER1_type 0 175 2 310 298 28 21 chrX 33224088 33224229 -143749911 - L1ME4a LINE L1 -26 6095 5954 490 256 112 11 chrX 33224740 33224954 -143749186 - MIR SINE MIR 0 262 26 324 313 133 33 chrX 33225290 33225501 -143748639 - MIR SINE MIR -5 257 26 831 286 76 8 chrX 33225919 33226322 -143747818 + L1MC4 LINE L1 7270 7594 -367 1175 174 26 17 chrX 33226360 33226590 -143747550 - MSTB1 LTR MaLR 0 432 201 20073 181 24 11 chrX 33226595 33231967 -143742173 + L1M1 LINE L1 41 5492 -2073 6973 171 57 19 chrX 33232108 33235326 -143738814 + L1MA1 LINE L1 2747 6295 -7 1017 182 0 0 chrX 33235328 33235498 -143738642 + AluJo SINE Alu 121 290 -22 406 317 19 29 chrX 33235524 33235732 -143738408 + L1MEc LINE L1 985 1190 -5206 260 240 0 70 chrX 33235864 33235964 -143738176 + L1MEc LINE L1 1217 1309 -4908 1527 156 8 0 chrX 33236433 33236677 -143737463 - L1PB3 LINE L1 -1 6153 5908 355 156 10 73 chrX 33236725 33236821 -143737319 - MER5C DNA MER1_type -2 322 233 526 252 42 0 chrX 33236849 33236968 -143737172 - MER5C DNA MER1_type -200 124 1 2538 52 3 3 chrX 33237441 33237751 -143736389 - AluY SINE Alu -1 310 1 495 264 32 0 chrX 33238698 33238823 -143735317 - MER103 DNA DNA -16 150 22 24 0 0 0 chrX 33238848 33238872 -143735268 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chrX 33238974 33239010 -143735130 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chrX 33239063 33239114 -143735026 + AT_rich Low_complexity Low_complexity 1 51 0 775 246 19 0 chrX 33239134 33239345 -143734795 + L1MEc LINE L1 2402 2616 -3599 730 148 16 0 chrX 33239353 33239481 -143734659 - L1PA15 LINE L1 -4 6161 6032 1865 68 4 4 chrX 33239481 33239717 -143734423 - AluY SINE Alu -75 236 1 3060 251 47 1 chrX 33239804 33240504 -143733636 + L1M3b LINE L1 9 740 -5541 1458 263 38 73 chrX 33240602 33241108 -143733032 + L1M3b LINE L1 588 1075 -5206 1678 158 25 0 chrX 33291509 33291788 -143682352 + AluSq SINE Alu 24 309 -4 495 239 37 101 chrX 33292653 33292830 -143681310 + L1MEc LINE L1 1704 1891 -4505 2274 108 3 0 chrX 33292830 33293126 -143681014 - AluSx SINE Alu -15 297 1 495 239 37 101 chrX 33293126 33293353 -143680787 + L1MEc LINE L1 1891 2082 -4314 2344 83 3 0 chrX 33293497 33293787 -143680353 + AluSx SINE Alu 1 291 -21 1332 221 59 27 chrX 33293865 33293968 -143680172 + L1MB7 LINE L1 4665 4763 -1383 1864 106 7 0 chrX 33293968 33294242 -143679898 + L1MA8 LINE L1 6012 6287 -4 1332 221 59 27 chrX 33294242 33294560 -143679580 + L1MB7 LINE L1 4763 5069 -1077 3302 137 14 78 chrX 33294560 33294780 -143679360 + MLT2B3 LTR ERVL 1 234 -320 294 29 0 0 chrX 33294780 33294815 -143679325 + (TC)n Simple_repeat Simple_repeat 2 36 0 3302 137 14 78 chrX 33294815 33295186 -143678954 + MLT2B3 LTR ERVL 234 554 0 4584 230 19 38 chrX 33295190 33296281 -143677859 + MLT-int LTR MaLR 5 1075 -660 2551 164 28 14 chrX 33296291 33296805 -143677335 - LTR27 LTR ERV1 -11 490 2 3099 227 30 0 chrX 33296805 33297399 -143676741 + MSTC-int LTR MaLR 1124 1735 0 1061 199 137 59 chrX 33297399 33297756 -143676384 + MSTC LTR MaLR 1 385 -43 298 83 125 0 chrX 33299543 33299591 -143674549 + MSTC LTR MaLR 403 456 -1 3287 185 90 41 chrX 33299592 33299723 -143674417 + L1MB7 LINE L1 5062 5185 -999 2285 123 0 0 chrX 33299723 33300032 -143674108 + AluSq SINE Alu 1 309 -4 3287 185 90 41 chrX 33300032 33300575 -143673565 + L1MB7 LINE L1 5185 5700 -484 1790 171 0 23 chrX 33300575 33300874 -143673266 + AluJb SINE Alu 1 292 -20 3287 185 90 41 chrX 33300874 33301116 -143673024 + L1MB7 LINE L1 5700 5929 -255 2357 93 3 0 chrX 33301116 33301407 -143672733 - AluSp SINE Alu -21 292 1 3287 185 90 41 chrX 33301407 33301543 -143672597 + L1MB7 LINE L1 5929 6184 0 405 0 0 0 chrX 33301768 33301813 -143672327 + (TA)n Simple_repeat Simple_repeat 1 45 0 45367 36 2 1 chrX 33301816 33307960 -143666180 + L1PA4 LINE L1 2 6147 -8 212 0 36 0 chrX 33307968 33307996 -143666144 + (TA)n Simple_repeat Simple_repeat 1 29 0 183 256 0 0 chrX 33309102 33309145 -143664995 + MIR SINE MIR 216 258 -4 492 324 91 29 chrX 33309677 33310017 -143664123 + L2 LINE L2 2912 3272 0 2271 89 14 7 chrX 33310912 33311204 -143662936 - AluSc SINE Alu -15 294 1 2192 77 73 0 chrX 33311477 33311764 -143662376 - AluSx SINE Alu -4 308 1 27 0 0 0 chrX 33314287 33314314 -143659826 + AT_rich Low_complexity Low_complexity 1 27 0 1143 206 192 114 chrX 33314535 33315333 -143658807 - L2 LINE L2 -18 3295 2273 288 248 197 8 chrX 33315333 33315450 -143658690 - L1ME3A LINE L1 -4 6166 6028 1143 206 192 114 chrX 33315450 33315715 -143658425 - L2 LINE L2 -1040 2273 2030 2350 85 3 3 chrX 33315931 33316225 -143657915 - AluSp SINE Alu -19 294 1 198 347 13 0 chrX 33316267 33316342 -143657798 - L2 LINE L2 -217 3055 2980 1478 213 68 43 chrX 33316352 33316746 -143657394 - MLT1C LTR MaLR 0 467 64 247 164 229 0 chrX 33316793 33316854 -143657286 - MLT1C LTR MaLR -385 82 8 801 248 39 19 chrX 33316893 33317099 -143657041 - MER63A DNA MER1_type 0 210 1 210 348 0 77 chrX 33317151 33317224 -143656916 - L2 LINE L2 -467 2847 2791 1799 167 3 13 chrX 33317224 33317524 -143656616 - AluJb SINE Alu -15 297 1 210 348 0 77 chrX 33317524 33317605 -143656535 - L2 LINE L2 -523 2791 2705 2156 114 149 11 chrX 33317787 33318163 -143655977 + MSTA LTR MaLR 1 428 0 280 241 172 0 chrX 33318223 33318339 -143655801 - L2 LINE L2 -3 3310 3175 1991 208 96 47 chrX 33318624 33319219 -143654921 + MLT1E3 LTR MaLR 1 624 0 2270 103 0 7 chrX 33320225 33320526 -143653614 - AluSx SINE Alu -12 300 2 7158 46 17 35 chrX 33320807 33322355 -143651785 + SVA Other Other 4 1408 0 2337 90 0 7 chrX 33322612 33322912 -143651228 - AluSc SINE Alu -11 298 1 252 83 28 0 chrX 33323376 33323412 -143650728 + Alu SINE Alu 1 37 -265 1209 157 66 138 chrX 33323512 33323817 -143650323 - LTR8 LTR ERV1 -435 256 1 215 297 54 40 chrX 33323824 33323898 -143650242 + L2 LINE L2 3189 3263 -9 24 67 0 0 chrX 33324231 33324276 -143649864 + AT_rich Low_complexity Low_complexity 1 45 0 357 93 0 0 chrX 33324684 33324738 -143649402 + (TG)n Simple_repeat Simple_repeat 2 55 0 1204 179 119 112 chrX 33325723 33326269 -143647871 - MER34C LTR ERV1 0 585 36 233 287 19 83 chrX 33326667 33326775 -143647365 - MLT2E LTR ERVL -490 138 38 338 209 0 0 chrX 33327135 33327202 -143646938 - MER92C LTR ERV1 -4 550 484 356 251 30 84 chrX 33327294 33327461 -143646679 - MER92C LTR ERV1 -386 168 11 1409 193 143 48 chrX 33327587 33328007 -143646133 + MER34C LTR ERV1 1 460 -125 297 160 47 6 chrX 33328007 33328176 -143645964 + (TA)n Simple_repeat Simple_repeat 1 176 0 629 46 73 0 chrX 33328278 33328387 -143645753 - MER41B LTR ERV1 -518 117 1 310 197 0 15 chrX 33328475 33328541 -143645599 - L1M4 LINE L1 -870 5276 5212 228 220 0 0 chrX 33328746 33328796 -143645344 + L1M4 LINE L1 3627 3676 -2470 249 108 0 0 chrX 33328799 33328836 -143645304 + (CA)n Simple_repeat Simple_repeat 2 38 0 489 321 19 41 chrX 33328883 33329056 -143645084 + L1M4 LINE L1 3754 3920 -2226 2077 107 4 4 chrX 33329056 33329337 -143644803 + AluSx SINE Alu 3 283 -29 489 321 19 41 chrX 33329337 33329431 -143644709 + L1M4 LINE L1 3920 4015 -2131 5684 102 40 28 chrX 33329708 33329737 -143644403 - Tigger3b DNA MER2_type -1799 1229 1202 2126 100 0 0 chrX 33329737 33330016 -143644124 + AluSg SINE Alu 1 279 -31 414 0 0 0 chrX 33330016 33330062 -143644078 + (CA)n Simple_repeat Simple_repeat 1 46 0 5684 102 40 28 chrX 33330062 33330499 -143643641 - Tigger3b DNA MER2_type -1826 1202 771 1792 169 10 20 chrX 33330499 33330795 -143643345 + AluJo SINE Alu 3 295 -17 2291 81 0 3 chrX 33330795 33331093 -143643047 + AluSg SINE Alu 1 297 -13 5684 102 40 28 chrX 33331093 33331608 -143642532 - Tigger3b DNA MER2_type -2256 772 234 236 216 40 54 chrX 33333086 33333160 -143640980 + L2 LINE L2 3199 3271 -1 204 125 0 0 chrX 33334977 33335009 -143639131 + (T)n Simple_repeat Simple_repeat 1 32 0 451 266 20 110 chrX 33336048 33336272 -143637868 - MIR SINE MIR -15 247 37 21 0 0 0 chrX 33336551 33336572 -143637568 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 33336617 33336640 -143637500 + AT_rich Low_complexity Low_complexity 1 23 0 192 77 0 0 chrX 33336790 33336816 -143637324 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2135 115 0 3 chrX 33336818 33337106 -143637034 - AluSg SINE Alu -23 287 1 589 131 61 0 chrX 33337108 33337207 -143636933 - L1PA7 LINE L1 -8 6146 6042 1072 54 15 0 chrX 33337244 33337374 -143636766 - AluYb8 SINE Alu -186 132 1 745 124 8 0 chrX 33337374 33337503 -143636637 - L1PA8 LINE L1 -104 6068 5939 2583 87 0 0 chrX 33337577 33337889 -143636251 - AluSx SINE Alu 0 312 1 207 246 140 18 chrX 33338416 33338473 -143635667 + L2 LINE L2 3196 3259 -54 2383 137 99 9 chrX 33338498 33338921 -143635219 - LOR1b LTR ERV1 0 461 1 24 0 0 0 chrX 33339333 33339357 -143634783 + AT_rich Low_complexity Low_complexity 1 24 0 499 122 0 0 chrX 33339357 33339431 -143634709 - MER58 DNA MER1_type 0 2420 2347 1891 128 0 18 chrX 33339456 33339737 -143634403 + AluSx SINE Alu 1 276 -36 1030 68 34 17 chrX 33339741 33339918 -143634222 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 351 246 24 0 chrX 33339932 33340058 -143634082 + GA-rich Low_complexity Low_complexity 3 131 0 194 61 0 30 chrX 33340058 33340091 -143634049 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 462 195 0 0 chrX 33340098 33340175 -143633965 - MER58A DNA MER1_type -26 81 5 520 233 134 36 chrX 33340665 33340888 -143633252 + LTR37A LTR ERV1 1 245 -181 401 209 0 11 chrX 33340953 33341044 -143633096 + MER31-int LTR ERV1 4380 4469 -467 396 175 78 0 chrX 33341749 33341828 -143632312 - MER34C LTR ERV1 0 585 467 2094 102 64 7 chrX 33341828 33342123 -143632017 + AluSx SINE Alu 1 312 0 396 175 78 0 chrX 33342123 33342145 -143631995 - MER34C LTR ERV1 -118 467 448 2790 140 45 2 chrX 33342147 33342612 -143631528 + MER31A LTR ERV1 1 485 0 1681 157 44 4 chrX 33342620 33342894 -143631246 + AluJo SINE Alu 1 285 -27 520 76 47 35 chrX 33342894 33343065 -143631075 + (TA)n Simple_repeat Simple_repeat 1 173 0 24 0 0 0 chrX 33343080 33343104 -143631036 + AT_rich Low_complexity Low_complexity 1 24 0 485 90 62 29 chrX 33343120 33343887 -143630253 + (TA)n Simple_repeat Simple_repeat 1 792 0 2490 128 23 0 chrX 33344468 33344860 -143629280 - MSTA LTR MaLR -27 401 1 5317 229 86 25 chrX 33344860 33346286 -143627854 + MSTD-int LTR MaLR 223 1735 0 1928 157 93 6 chrX 33346286 33346650 -143627490 + MSTD LTR MaLR 1 396 0 379 353 24 0 chrX 33347312 33347479 -143626661 - MER117 DNA MER1_type -26 171 1 2131 116 0 26 chrX 33350419 33350708 -143623432 + AluSx SINE Alu 1 296 -16 180 97 0 0 chrX 33350708 33350739 -143623401 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 189 107 0 0 chrX 33350742 33350770 -143623370 + (TA)n Simple_repeat Simple_repeat 1 28 0 2131 116 0 26 chrX 33350770 33350786 -143623354 + AluSx SINE Alu 298 302 -10 1840 151 46 6 chrX 33350912 33351236 -143622904 - MER1B DNA MER1_type 0 337 1 1824 146 9 27 chrX 33351236 33351564 -143622576 - MLT2C1 LTR ERVL -74 323 2 2002 160 75 23 chrX 33351565 33352008 -143622132 - ERVL-C1 LTR ERVL -8 5756 5291 364 219 10 31 chrX 33352109 33352205 -143621935 + MER34 LTR ERV1 448 541 -1 624 285 43 62 chrX 33352205 33352315 -143621825 - L2 LINE L2 -170 3143 3032 2415 100 0 0 chrX 33352315 33352625 -143621515 - AluSp SINE Alu -3 310 1 624 285 43 62 chrX 33352625 33352868 -143621272 - L2 LINE L2 -281 3032 2800 983 189 27 5 chrX 33352868 33353053 -143621087 - MER5A DNA MER1_type 0 189 1 624 285 43 62 chrX 33353053 33353123 -143621017 - L2 LINE L2 -513 2800 2730 825 232 90 86 chrX 33353151 33353698 -143620442 + MER34C LTR ERV1 37 585 0 1720 186 23 57 chrX 33353830 33354307 -143619833 - MER31B LTR ERV1 0 661 12 189 0 0 0 chrX 33354443 33354464 -143619676 + (CAATT)n Simple_repeat Simple_repeat 4 24 0 1535 169 74 67 chrX 33354558 33355003 -143619137 - LTR8A LTR ERV1 0 727 280 1593 151 23 4 chrX 33355122 33355381 -143618759 - ERVL-C1 LTR ERVL -700 5064 4801 553 226 0 16 chrX 33355381 33355505 -143618635 - MLT1D-int LTR MaLR -645 726 605 2874 200 12 0 chrX 33355581 33356180 -143617960 - MLT1D-int LTR MaLR -765 606 1 1306 212 157 20 chrX 33356182 33356621 -143617519 - MLT1D LTR MaLR -2 503 5 342 256 45 19 chrX 33356622 33356778 -143617362 - L1MEc LINE L1 -3802 2413 2254 243 324 38 21 chrX 33356789 33357162 -143616978 - L1MEc LINE L1 -4144 2252 1874 298 301 153 5 chrX 33357186 33357382 -143616758 - L1MEc LINE L1 -4585 1811 1587 1897 137 25 0 chrX 33357487 33357772 -143616368 - AluJo SINE Alu -20 292 1 323 292 84 47 chrX 33357837 33358111 -143616029 + MLT1J LTR MaLR 228 511 0 933 260 30 7 chrX 33358236 33358536 -143615604 + L1MC4 LINE L1 6762 7068 -974 878 271 14 0 chrX 33358615 33358836 -143615304 - LTR16A LTR ERVL -24 426 203 1634 136 5 136 chrX 33358837 33359235 -143614905 + MER7A DNA MER2_type 2 345 -1 230 344 64 19 chrX 33359291 33359448 -143614692 - LTR16A1 LTR ERVL -293 164 1 459 259 20 30 chrX 33359456 33359657 -143614483 + L1MC4 LINE L1 7113 7311 -731 529 185 60 46 chrX 33359739 33359890 -143614250 + L1MC5 LINE L1 7311 7463 -498 1801 162 0 23 chrX 33359946 33360249 -143613891 - AluJo SINE Alu -16 296 1 372 127 0 0 chrX 33360492 33360547 -143613593 - AluSp SINE Alu -106 197 143 529 213 115 55 chrX 33360642 33360825 -143613315 + L2 LINE L2 3118 3311 -2 2223 101 0 7 chrX 33361133 33361430 -143612710 - AluSx SINE Alu -17 295 1 674 147 0 120 chrX 33361508 33361635 -143612505 - FLAM_A SINE Alu -170 132 24 2217 109 0 7 chrX 33361635 33361938 -143612202 + AluSx SINE Alu 1 301 -11 674 147 0 120 chrX 33361938 33361960 -143612180 - FLAM_A SINE Alu -278 24 1 1740 118 0 0 chrX 33362635 33362872 -143611268 + AluSx SINE Alu 1 237 -75 811 215 86 76 chrX 33363216 33363395 -143610745 - L1MC5 LINE L1 -44 7917 7741 650 39 0 0 chrX 33363395 33363473 -143610667 + MADE1 DNA Mariner 1 78 -2 811 215 86 76 chrX 33363473 33363712 -143610428 - L1MC5 LINE L1 -220 7741 7495 1567 175 4 8 chrX 33363822 33364074 -143610066 - AluJo SINE Alu -12 300 50 938 112 8 15 chrX 33364077 33364211 -143609929 - AluJo/FLAM SINE Alu -179 133 1 275 299 0 0 chrX 33365358 33365425 -143608715 - L2 LINE L2 -1 3271 3205 182 319 28 99 chrX 33365503 33365644 -143608496 - L2 LINE L2 -242 3030 2900 356 265 188 33 chrX 33365846 33366027 -143608113 - L1MC4a LINE L1 -1862 5946 5738 5279 138 48 3 chrX 33366276 33367384 -143606756 + L1PA16 LINE L1 5004 6157 -9 351 195 0 35 chrX 33367392 33367479 -143606661 + L1MEd LINE L1 977 1060 -5059 254 296 112 7 chrX 33367484 33367636 -143606504 + L1ME3A LINE L1 5784 5951 -219 2413 87 0 3 chrX 33368060 33368370 -143605770 - AluSg SINE Alu -1 309 1 695 194 0 0 chrX 33368936 33369065 -143605075 - MLT1B LTR MaLR 0 390 262 1792 151 53 7 chrX 33369558 33369842 -143604298 - AluJo SINE Alu -15 297 1 1414 88 72 34 chrX 33371156 33371234 -143602906 - L1MA8 LINE L1 -5 6286 6212 8740 52 2 0 chrX 33371234 33372301 -143601839 - MER11C LTR ERVK -2 1069 1 1414 88 72 34 chrX 33372301 33372485 -143601655 - L1MA8 LINE L1 -79 6212 6014 283 328 17 17 chrX 33372529 33372645 -143601495 + L2 LINE L2 2404 2519 -795 243 161 0 54 chrX 33372635 33372691 -143601449 - L2 LINE L2 -677 2637 2585 * 849 260 0 35 chrX 33372714 33372941 -143601199 + MIR SINE MIR 28 246 -16 468 244 122 0 chrX 33372941 33373072 -143601068 + L2 LINE L2 3164 3310 -3 2152 100 0 0 chrX 33373390 33373712 -143600428 + AluSx SINE Alu 1 322 0 542 252 34 113 chrX 33373863 33374129 -143600011 - L2 LINE L2 -12 3260 3016 3669 167 105 21 chrX 33374449 33375367 -143598773 - L1MB7 LINE L1 0 6184 5179 802 158 0 16 chrX 33375367 33375494 -143598646 - FRAM SINE Alu -11 165 41 1167 175 66 4 chrX 33375496 33375781 -143598359 - L1PA16 LINE L1 0 6163 5837 664 114 0 0 chrX 33375782 33375870 -143598270 - FLAM SINE Alu -21 122 38 3068 212 28 41 chrX 33375870 33376628 -143597512 - L1MB7 LINE L1 -961 5185 4438 344 268 159 43 chrX 33376767 33376905 -143597235 + L3 LINE CR1 1321 1474 -103 238 343 22 30 chrX 33376947 33377081 -143597059 + MER5A DNA MER1_type 31 163 -26 212 302 0 48 chrX 33377886 33377949 -143596191 - L3 LINE CR1 -932 645 586 670 241 98 20 chrX 33378451 33378654 -143595486 + L1M4b LINE L1 11 229 -6630 3377 198 53 41 chrX 33378739 33380076 -143594064 + L1PA8 LINE L1 4822 6172 0 1989 239 102 9 chrX 33380078 33380461 -143593679 + L1MD2 LINE L1 5551 6000 -359 261 0 0 0 chrX 33380461 33380490 -143593650 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1989 239 102 9 chrX 33380490 33380646 -143593494 + L1MD2 LINE L1 6000 6140 -219 3927 185 69 30 chrX 33380722 33381059 -143593081 + L1MB7 LINE L1 5188 5510 -674 2498 73 3 0 chrX 33381059 33381360 -143592780 - AluSp SINE Alu -11 302 1 3927 185 69 30 chrX 33381360 33381985 -143592155 + L1MB7 LINE L1 5510 6180 -4 2419 98 0 0 chrX 33385171 33385478 -143588662 + AluSx SINE Alu 1 307 -5 2137 100 3 55 chrX 33386565 33386876 -143587264 + AluSx SINE Alu 1 295 -17 297 280 160 29 chrX 33388597 33388772 -143585368 + MIR3 SINE MIR 2 199 -9 2510 74 0 0 chrX 33389310 33389607 -143584533 - AluSg SINE Alu -13 297 1 4034 175 87 5 chrX 33390160 33390941 -143583199 + L1MD2 LINE L1 5514 6358 -1 1132 166 20 20 chrX 33391022 33391221 -143582919 + AluJo SINE Alu 84 282 -30 351 0 0 0 chrX 33391224 33391263 -143582877 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1221 207 58 126 chrX 33391493 33391988 -143582152 + L1M4 LINE L1 3222 3668 -2478 217 287 49 57 chrX 33392691 33392813 -143581327 - MIR SINE MIR -122 140 20 4702 141 45 90 chrX 33393241 33394209 -143579931 - MER21A LTR ERV1 -6 925 1 531 0 0 0 chrX 33394555 33394614 -143579526 + (CA)n Simple_repeat Simple_repeat 2 60 0 240 86 0 0 chrX 33394618 33394653 -143579487 + (TC)n Simple_repeat Simple_repeat 1 35 0 305 354 67 20 chrX 33395040 33395235 -143578905 + MIR SINE MIR 9 212 -50 252 0 0 0 chrX 33396292 33396320 -143577820 + (TG)n Simple_repeat Simple_repeat 2 29 0 263 239 0 45 chrX 33397218 33397243 -143576897 + MER3 DNA MER1_type 27 48 -161 406 203 0 0 chrX 33397243 33397317 -143576823 - MER3 DNA MER1_type -1 208 135 3102 143 105 140 chrX 33397317 33397708 -143576432 + L1MC3 LINE L1 6705 7108 -677 294 207 0 117 chrX 33397708 33397819 -143576321 + MLT1F1 LTR MaLR 25 122 -445 3102 143 105 140 chrX 33397819 33398107 -143576033 + L1MC3 LINE L1 7108 7458 -327 2387 56 0 30 chrX 33398107 33398409 -143575731 + AluY SINE Alu 1 293 -18 3102 143 105 140 chrX 33398409 33398563 -143575577 + L1MC3 LINE L1 7458 7616 -169 226 316 76 0 chrX 33398857 33398936 -143575204 + MIR SINE MIR 165 249 -13 261 119 0 0 chrX 33399152 33399194 -143574946 + (CA)n Simple_repeat Simple_repeat 1 42 0 1047 128 7 0 chrX 33400240 33400388 -143573752 - AluJb SINE Alu -6 306 158 2406 126 10 42 chrX 33400438 33400493 -143573647 - L1MB2 LINE L1 0 6171 6116 2428 77 0 3 chrX 33400493 33400790 -143573350 - AluY SINE Alu -15 296 1 2406 126 10 42 chrX 33400790 33401140 -143573000 - L1MB2 LINE L1 -55 6116 5779 2041 100 18 7 chrX 33401143 33401448 -143572692 - AluSp SINE Alu 0 308 1 1015 178 11 11 chrX 33402050 33402241 -143571899 + MER3 DNA MER1_type 19 209 0 278 224 0 0 chrX 33402199 33402248 -143571892 - MER3 DNA MER1_type -120 89 41 * 554 305 64 5 chrX 33402377 33402564 -143571576 + MIR SINE MIR 17 214 -48 1325 174 0 9 chrX 33403352 33403570 -143570570 + AluJo SINE Alu 86 301 -11 353 139 62 5 chrX 33403850 33403929 -143570211 + Alu SINE Alu 237 302 0 284 106 21 0 chrX 33404043 33404090 -143570050 - L1MB4 LINE L1 0 6180 6133 475 62 0 0 chrX 33404092 33404156 -143569984 - Alu SINE Alu -4 308 245 946 169 17 34 chrX 33404762 33404939 -143569201 + FRAM SINE Alu 1 174 -2 255 247 108 88 chrX 33404984 33405178 -143568962 + L1ME3 LINE L1 5918 6115 -47 296 213 2 25 chrX 33405198 33405278 -143568862 - MLT1L LTR MaLR 0 615 431 238 179 0 0 chrX 33405459 33405498 -143568642 - LTR67 LTR ERVL -424 133 95 2300 83 7 0 chrX 33405708 33405997 -143568143 - AluSp SINE Alu -22 291 1 2419 97 3 0 chrX 33406008 33406319 -143567821 - AluSq SINE Alu -1 312 1 2384 99 3 0 chrX 33406320 33406624 -143567516 - AluSq SINE Alu -8 305 1 25 51 0 0 chrX 33408248 33408287 -143565853 + AT_rich Low_complexity Low_complexity 1 39 0 44193 30 22 1 chrX 33408290 33414318 -143559822 - L1PA3 LINE L1 0 6155 1 274 216 14 0 chrX 33414318 33414392 -143559748 - MER33 DNA MER1_type -156 207 133 2379 110 0 0 chrX 33414392 33414701 -143559439 + AluSx SINE Alu 2 310 -2 469 159 232 1 chrX 33414717 33414813 -143559327 - MER33 DNA MER1_type -250 74 1 446 134 98 0 chrX 33415193 33415275 -143558865 - L1MB7 LINE L1 0 6184 6095 2017 124 35 0 chrX 33415284 33415567 -143558573 - AluSx SINE Alu -19 293 1 849 181 85 16 chrX 33415578 33415766 -143558374 - L1MB4 LINE L1 0 6180 5980 1791 164 13 20 chrX 33416259 33416563 -143557577 - AluJo SINE Alu -10 302 1 1592 138 12 12 chrX 33417225 33417478 -143556662 + AluJb SINE Alu 1 253 -59 2105 131 3 3 chrX 33417818 33418130 -143556010 - AluJb SINE Alu 0 312 1 248 123 55 0 chrX 33418625 33418698 -143555442 + (TAA)n Simple_repeat Simple_repeat 3 79 0 239 276 0 0 chrX 33419176 33419234 -143554906 + A-rich Low_complexity Low_complexity 1 58 0 338 21 0 42 chrX 33420557 33420605 -143553535 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 353 229 67 29 chrX 33421358 33421463 -143552677 + MIR3 SINE MIR 88 196 -12 315 345 84 51 chrX 33421956 33422252 -143551888 - L2 LINE L2 -5 3267 2962 264 30 0 0 chrX 33423568 33423601 -143550539 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 557 258 157 0 chrX 33424108 33424267 -143549873 - MER5A DNA MER1_type -3 186 3 2131 130 0 3 chrX 33425023 33425322 -143548818 - AluSx SINE Alu -14 298 1 1755 164 66 11 chrX 33425445 33425811 -143548329 + MER58D DNA MER1_type 1 386 0 23 33 0 0 chrX 33425972 33426002 -143548138 + AT_rich Low_complexity Low_complexity 1 30 0 227 256 47 12 chrX 33427137 33427223 -143546917 + MIR3 SINE MIR 95 183 -25 924 229 57 0 chrX 33427724 33427951 -143546189 - MIR SINE MIR -21 241 2 7295 203 81 29 chrX 33428356 33430097 -143544043 - L1MD2 LINE L1 -470 5889 3961 2372 99 0 0 chrX 33430097 33430400 -143543740 + AluY SINE Alu 3 305 -6 7295 203 81 29 chrX 33430400 33431293 -143542847 - L1MD2 LINE L1 -2398 3961 3115 567 236 113 57 chrX 33432369 33432598 -143541542 + MIR SINE MIR 20 261 -1 969 219 21 39 chrX 33432858 33433091 -143541049 - MER106A DNA MER1_type -1 235 7 899 171 0 151 chrX 33433105 33433363 -143540777 + MER20 DNA MER1_type 1 219 0 22 35 0 0 chrX 33435210 33435239 -143538901 + AT_rich Low_complexity Low_complexity 1 29 0 2430 86 0 19 chrX 33435704 33436018 -143538122 + AluSx SINE Alu 1 308 -4 405 0 0 0 chrX 33436294 33436339 -143537801 + (T)n Simple_repeat Simple_repeat 1 45 0 1317 130 128 185 chrX 33436903 33437417 -143536723 - MER31A LTR ERV1 0 485 1 229 233 63 107 chrX 33437417 33437623 -143536517 + L1MC4 LINE L1 7829 8025 -17 380 275 192 6 chrX 33438127 33438294 -143535846 - MIR SINE MIR -18 244 47 1486 268 70 78 chrX 33438531 33438982 -143535158 - MLT1G LTR MaLR -88 507 20 329 259 12 0 chrX 33439155 33439240 -143534900 + L2 LINE L2 3185 3270 -2 202 73 49 0 chrX 33441251 33441292 -143532848 + A-rich Low_complexity Low_complexity 4 46 0 203 256 0 0 chrX 33441629 33441672 -143532468 + (TG)n Simple_repeat Simple_repeat 2 44 0 305 315 11 0 chrX 33442001 33442093 -143532047 - L2 LINE L2 0 3313 3221 1684 152 34 14 chrX 33442342 33442638 -143531502 - AluJo SINE Alu -10 302 1 1897 151 143 8 chrX 33442718 33443095 -143531045 - MSTA LTR MaLR 0 428 1 2326 98 0 0 chrX 33443101 33443398 -143530742 + AluSx SINE Alu 1 297 -15 417 159 0 0 chrX 33443448 33443517 -143530623 - MLT1E2 LTR MaLR -2 624 556 819 154 23 0 chrX 33443521 33443651 -143530489 - AluJb SINE Alu -179 133 1 1012 197 325 38 chrX 33443651 33443941 -143530199 - MLT1E2 LTR MaLR -52 574 368 2294 111 0 13 chrX 33443941 33444248 -143529892 - AluSx SINE Alu -9 303 1 1012 197 325 38 chrX 33444248 33444403 -143529737 - MLT1E2 LTR MaLR -258 368 1 316 208 0 0 chrX 33444732 33444785 -143529355 + L2 LINE L2 3242 3294 -19 2504 210 157 39 chrX 33445195 33445933 -143528207 - MER21B LTR ERV1 -27 836 12 620 227 20 7 chrX 33445955 33446105 -143528035 - MIR SINE MIR -80 182 31 1787 160 11 3 chrX 33449216 33449537 -143524603 - AluJb SINE Alu 0 323 1 408 211 55 0 chrX 33449624 33449733 -143524407 - L1ME3A LINE L1 -10 6094 5980 1263 141 6 0 chrX 33449739 33449916 -143524224 + AluJb SINE Alu 1 178 -134 2144 208 51 12 chrX 33449957 33450717 -143523423 - L1ME3A LINE L1 -143 5961 5106 2260 118 0 0 chrX 33450717 33451014 -143523126 - AluSx SINE Alu -15 297 1 2144 208 51 12 chrX 33451014 33451169 -143522971 - L1ME3A LINE L1 -998 5106 4959 304 230 86 58 chrX 33451590 33451729 -143522411 - L1ME3A LINE L1 -5887 183 41 946 238 102 85 chrX 33452335 33453038 -143521102 + HAL1 LINE L1 968 1682 -825 1557 146 51 67 chrX 33453322 33453637 -143520503 - AluJb SINE Alu -2 310 1 267 103 0 0 chrX 33453997 33454036 -143520104 + (TA)n Simple_repeat Simple_repeat 2 40 0 2493 77 0 0 chrX 33454335 33454633 -143519507 + AluSc SINE Alu 1 298 -11 1239 151 0 47 chrX 33455067 33455164 -143518976 + MER20 DNA MER1_type 18 118 -101 2512 120 6 6 chrX 33455164 33455530 -143518610 + MER47A DNA MER2_type 1 366 0 1239 151 0 47 chrX 33455530 33455644 -143518496 + MER20 DNA MER1_type 118 219 0 2612 65 3 0 chrX 33456721 33457030 -143517110 - AluSg SINE Alu 0 310 1 232 221 156 0 chrX 33457030 33457107 -143517033 + MIR SINE MIR 114 202 -60 228 300 70 0 chrX 33457526 33457626 -143516514 - MIR SINE MIR -69 139 33 2112 121 7 0 chrX 33459640 33459930 -143514210 - AluSx SINE Alu -20 292 1 2191 102 0 3 chrX 33459939 33460257 -143513883 - AluSg SINE Alu 0 317 1 2280 127 0 0 chrX 33460730 33461038 -143513102 + AluSq SINE Alu 1 308 -5 2199 108 0 3 chrX 33463507 33463802 -143510338 - AluSg SINE Alu -16 294 1 1777 67 0 9 chrX 33464455 33464680 -143509460 - AluSg/x SINE Alu 0 310 88 430 160 0 0 chrX 33464855 33464930 -143509210 + MER116 DNA Mariner 1 75 -5 2052 152 3 0 chrX 33464944 33465241 -143508899 + AluJb SINE Alu 1 298 -14 201 74 0 0 chrX 33465620 33465647 -143508493 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2177 92 0 7 chrX 33465786 33466119 -143508021 - AluSg SINE Alu 0 331 1 402 287 35 46 chrX 33467056 33467230 -143506910 - MER5B DNA MER1_type 0 178 7 1132 188 9 39 chrX 33470345 33470574 -143503566 + MER58A DNA MER1_type 3 224 0 2218 94 0 30 chrX 33470609 33470906 -143503234 + AluSx SINE Alu 1 288 -24 28 29 0 0 chrX 33471484 33471519 -143502621 + AT_rich Low_complexity Low_complexity 1 35 0 2242 120 0 3 chrX 33472712 33473012 -143501128 - AluSx SINE Alu -13 299 1 2359 124 122 20 chrX 33473048 33473450 -143500690 - LTR47B LTR ERVL 0 443 1 2363 84 7 0 chrX 33473524 33473820 -143500320 - AluSx SINE Alu -14 298 1 6606 204 93 26 chrX 33473829 33475131 -143499009 + L1MDa LINE L1 18 1232 -5308 2160 117 13 0 chrX 33475131 33475430 -143498710 - AluSx SINE Alu -9 303 1 6606 204 93 26 chrX 33475430 33477013 -143497127 + L1MDa LINE L1 1232 3624 -2916 1982 138 26 0 chrX 33477013 33477318 -143496822 + AluSq SINE Alu 1 313 0 6606 204 93 26 chrX 33477318 33477612 -143496528 + L1MDa LINE L1 3624 3897 -2643 2717 72 3 8 chrX 33477614 33477976 -143496164 + L1PA8 LINE L1 5813 6172 0 2260 95 0 0 chrX 33478001 33478306 -143495834 + AluSx SINE Alu 1 305 -7 4167 172 40 25 chrX 33478306 33479143 -143494997 + L1MD2 LINE L1 5474 6326 -33 1479 139 46 4 chrX 33479143 33479381 -143494759 - AluJo SINE Alu -64 248 1 4167 172 40 25 chrX 33479381 33479416 -143494724 + L1MD2 LINE L1 6326 6359 0 2097 95 0 3 chrX 33480112 33480395 -143493745 - AluSx SINE Alu -16 296 15 2360 82 3 0 chrX 33482641 33482944 -143491196 + AluSp SINE Alu 1 304 -9 1892 115 11 7 chrX 33483631 33483917 -143490223 + AluSx SINE Alu 1 287 -25 2131 119 7 0 chrX 33484086 33484396 -143489744 + AluSx SINE Alu 1 312 0 2289 80 10 0 chrX 33485121 33485420 -143488720 - AluSp SINE Alu -11 302 1 2678 112 40 5 chrX 33485647 33486077 -143488063 + L1MA4A LINE L1 5854 6298 -5 437 264 146 47 chrX 33487208 33487652 -143486488 + L1MC4a LINE L1 5444 5931 -1877 2292 76 3 0 chrX 33487781 33488072 -143486068 + AluSp SINE Alu 1 292 -21 2302 79 0 0 chrX 33488109 33488400 -143485740 - AluSg SINE Alu -19 291 1 23 0 0 0 chrX 33488401 33488424 -143485716 + AT_rich Low_complexity Low_complexity 1 23 0 2173 114 0 0 chrX 33488424 33488723 -143485417 - AluSx SINE Alu -13 299 1 256 328 12 9 chrX 33488724 33488831 -143485309 - MIR3 SINE MIR -41 167 60 2363 70 0 7 chrX 33489318 33489617 -143484523 + AluSc SINE Alu 1 297 -12 1679 172 0 23 chrX 33489670 33489973 -143484167 - AluJo SINE Alu -16 296 1 649 207 108 64 chrX 33490538 33490610 -143483530 + MLT1L LTR MaLR 62 129 -486 792 192 0 101 chrX 33490610 33490808 -143483332 + MER5B DNA MER1_type 1 178 0 649 207 108 64 chrX 33490808 33490938 -143483202 + MLT1L LTR MaLR 129 273 -342 1174 157 35 101 chrX 33490950 33491236 -143482904 + AluJb SINE Alu 1 267 -45 865 195 6 12 chrX 33491238 33491402 -143482738 + AluJo/FRAM SINE Alu 140 302 0 448 250 125 0 chrX 33491485 33491613 -143482527 + MLT1L LTR MaLR 335 478 -137 369 252 118 31 chrX 33491962 33492089 -143482051 + MIR SINE MIR 20 157 -105 197 250 62 0 chrX 33492087 33492135 -143482005 + L2 LINE L2 3201 3251 -21 * 189 74 0 0 chrX 33492525 33492552 -143481588 + (A)n Simple_repeat Simple_repeat 1 27 0 330 176 10 39 chrX 33493450 33493552 -143480588 + GA-rich Low_complexity Low_complexity 6 104 0 262 293 109 7 chrX 33493828 33493975 -143480165 + L2 LINE L2 1204 1365 -1949 21 36 0 0 chrX 33494732 33494760 -143479380 + GC_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chrX 33495197 33495232 -143478908 + GC_rich Low_complexity Low_complexity 1 35 0 258 175 0 70 chrX 33496456 33496538 -143477602 + MIR SINE MIR 102 174 -88 305 111 89 0 chrX 33496539 33496584 -143477556 + MLT1I LTR MaLR 354 402 -7 188 272 228 20 chrX 33496983 33497237 -143476903 + L2 LINE L2 852 1158 -2156 353 106 0 0 chrX 33497271 33497318 -143476822 + Alu SINE Alu 2 48 -254 341 256 142 61 chrX 33497340 33497586 -143476554 + L2 LINE L2 1217 1482 -1832 1591 136 28 35 chrX 33497680 33497967 -143476173 - AluJb SINE Alu -27 285 1 290 291 165 19 chrX 33498188 33498394 -143475746 + MLT1H LTR MaLR 119 354 -195 236 227 350 21 chrX 33498443 33498496 -143475644 - MER5A DNA MER1_type 0 189 155 1913 146 0 10 chrX 33498496 33498804 -143475336 + AluJb SINE Alu 1 305 -7 236 227 350 21 chrX 33498804 33498847 -143475293 - MER5A DNA MER1_type -34 155 61 1138 117 174 103 chrX 33498874 33499040 -143475100 - AluJo SINE Alu 0 302 106 2403 67 0 0 chrX 33499040 33499337 -143474803 + AluSg SINE Alu 1 297 -13 1138 117 174 103 chrX 33499337 33499452 -143474688 - AluJo SINE Alu -196 106 1 391 176 29 0 chrX 33499452 33499520 -143474620 - MER5A DNA MER1_type -111 78 9 211 189 0 0 chrX 33500279 33500316 -143473824 + CT-rich Low_complexity Low_complexity 2 38 0 267 261 92 0 chrX 33500346 33500411 -143473729 - MER91A DNA MER1_type 0 196 126 317 312 46 9 chrX 33500436 33500545 -143473595 - MER91A DNA MER1_type -42 154 42 299 325 19 34 chrX 33500546 33500668 -143473472 + L2 LINE L2 1709 1828 -1486 4766 76 40 9 chrX 33500668 33500902 -143473238 + PABL_B LTR ERV1 1 226 -441 2172 92 14 0 chrX 33500902 33501195 -143472945 + AluSx SINE Alu 3 299 -13 4766 76 40 9 chrX 33501195 33501607 -143472533 + PABL_B LTR ERV1 226 667 0 299 325 19 34 chrX 33501607 33501690 -143472450 + L2 LINE L2 1828 1911 -1403 810 210 0 34 chrX 33501712 33501888 -143472252 - AluJo SINE Alu -140 172 3 258 197 49 0 chrX 33501890 33501951 -143472189 + L2 LINE L2 1907 1970 -1344 251 330 64 0 chrX 33501980 33502089 -143472051 + L2 LINE L2 1957 2072 -1242 541 203 70 63 chrX 33502151 33502309 -143471831 + MIR SINE MIR 31 189 -73 405 0 0 0 chrX 33502309 33502354 -143471786 + (TA)n Simple_repeat Simple_repeat 2 46 0 1768 141 121 10 chrX 33502355 33502668 -143471472 + MER7A DNA MER2_type 1 346 0 347 0 23 0 chrX 33502669 33502712 -143471428 + (TG)n Simple_repeat Simple_repeat 2 45 0 714 291 221 22 chrX 33502832 33503206 -143470934 + L2 LINE L2 2227 2704 -610 1748 158 24 0 chrX 33503206 33503498 -143470642 - AluJb SINE Alu -13 299 1 714 291 221 22 chrX 33503498 33503567 -143470573 + L2 LINE L2 2704 2758 -556 282 270 0 0 chrX 33503631 33503694 -143470446 + L2 LINE L2 3249 3311 -2 336 48 0 0 chrX 33504014 33504056 -143470084 + (TC)n Simple_repeat Simple_repeat 2 43 0 1620 189 0 0 chrX 33504056 33504336 -143469804 - AluJb SINE Alu -32 280 1 360 259 67 37 chrX 33504504 33504639 -143469501 - L2 LINE L2 -4 3309 3171 2012 92 25 0 chrX 33504737 33505019 -143469121 + AluSx SINE Alu 1 289 -23 413 62 15 0 chrX 33505035 33505100 -143469040 + (TC)n Simple_repeat Simple_repeat 2 67 0 303 355 8 8 chrX 33505227 33505348 -143468792 - L1M4 LINE L1 -1465 4681 4561 377 200 55 27 chrX 33505357 33505467 -143468673 - MLT1D LTR MaLR -381 124 12 1400 195 20 37 chrX 33505475 33505505 -143468635 + L1M4 LINE L1 4375 4404 -1742 2054 131 0 0 chrX 33505505 33505811 -143468329 + AluSx SINE Alu 1 306 -6 1400 195 20 37 chrX 33505811 33506302 -143467838 + L1M4 LINE L1 4404 5011 -1135 1725 144 17 30 chrX 33506302 33506600 -143467540 + AluJb SINE Alu 1 294 -18 1400 195 20 37 chrX 33506600 33506914 -143467226 + L1M4 LINE L1 5011 5329 -817 2572 42 0 0 chrX 33508375 33508682 -143465458 + AluY SINE Alu 1 307 -4 3539 199 79 25 chrX 33508702 33509639 -143464501 + L1ME1 LINE L1 5186 6166 0 1689 218 34 53 chrX 33509773 33509832 -143464308 - LTR16A LTR ERVL -2 448 389 1635 118 0 0 chrX 33509832 33510061 -143464079 - AluSg/x SINE Alu -9 301 73 1689 218 34 53 chrX 33510061 33510437 -143463703 - LTR16A LTR ERVL -61 389 21 1804 118 3 20 chrX 33510730 33511027 -143463113 - AluJo SINE Alu -20 292 1 220 300 58 96 chrX 33511298 33511473 -143462667 + L2 LINE L2 2064 2244 -1070 2108 103 0 0 chrX 33511473 33511754 -143462386 + AluSq SINE Alu 1 281 -32 220 300 58 96 chrX 33511754 33512204 -143461936 + L2 LINE L2 2244 2665 -649 186 387 0 0 chrX 33512451 33512526 -143461614 + L2 LINE L2 2896 2970 -302 2076 117 0 7 chrX 33512653 33512951 -143461189 + AluSx SINE Alu 1 296 -16 849 145 0 0 chrX 33513290 33513414 -143460726 - FLAM_C SINE Alu -9 124 1 2133 84 3 7 chrX 33513563 33513847 -143460293 - AluSx SINE Alu -11 301 19 348 133 0 33 chrX 33513951 33514006 -143460134 - U3 snRNA snRNA -149 68 15 1734 169 16 3 chrX 33514006 33514313 -143459827 + AluJb SINE Alu 2 312 0 1807 86 124 0 chrX 33514737 33515004 -143459136 - AluSx SINE Alu -10 302 3 4401 147 32 4 chrX 33515143 33515835 -143458305 + MER50 LTR ERV1 1 711 -23 3918 109 79 60 chrX 33515836 33515899 -143458241 - LTR8A LTR ERV1 -19 708 648 2038 127 0 17 chrX 33515899 33516037 -143458103 + AluSx SINE Alu 1 140 -172 2022 128 3 0 chrX 33516037 33516326 -143457814 + AluSx SINE Alu 1 290 -22 2038 127 0 17 chrX 33516326 33516487 -143457653 + AluSx SINE Alu 140 295 -17 3918 109 79 60 chrX 33516487 33516910 -143457230 - LTR8A LTR ERV1 -79 648 203 2250 90 0 0 chrX 33516910 33517210 -143456930 - AluSx SINE Alu -12 300 1 3918 109 79 60 chrX 33517210 33517417 -143456723 - LTR8A LTR ERV1 -524 203 1 237 136 23 0 chrX 33517439 33517483 -143456657 - L1M4 LINE L1 -913 5233 5189 2139 169 43 102 chrX 33517489 33518045 -143456095 + MER4E LTR ERV1 1 523 -256 1951 110 11 0 chrX 33518055 33518337 -143455803 + AluSx SINE Alu 1 285 -27 30 32 0 48 chrX 33518418 33518443 -143455697 + AT_rich Low_complexity Low_complexity 1 26 -34 2220 92 0 0 chrX 33518443 33518735 -143455405 - AluSc SINE Alu -17 292 1 30 32 0 48 chrX 33518735 33518772 -143455368 + AT_rich Low_complexity Low_complexity 26 60 0 1677 174 0 7 chrX 33518974 33519267 -143454873 - AluJo SINE Alu -21 291 1 1958 122 125 12 chrX 33519324 33519659 -143454481 - MER83C LTR ERV1 0 373 1 390 291 139 40 chrX 33519661 33519925 -143454215 - L1M4 LINE L1 -1299 4847 4544 2275 55 17 3 chrX 33519925 33520215 -143453925 - AluY SINE Alu -17 294 1 390 291 139 40 chrX 33520215 33520273 -143453867 - L1M4 LINE L1 -1602 4544 4493 1125 150 0 95 chrX 33520503 33520698 -143453442 + L1MA9 LINE L1 5853 6020 -292 1913 142 0 3 chrX 33520698 33520994 -143453146 - AluSx SINE Alu -17 295 1 1125 150 0 95 chrX 33520994 33521051 -143453089 + L1MA9 LINE L1 6020 6081 -231 296 143 89 0 chrX 33521053 33521109 -143453031 + L1MA9 LINE L1 6180 6240 -72 1254 186 16 65 chrX 33521568 33521891 -143452249 + AluJo SINE Alu 1 307 -5 2120 92 0 20 chrX 33521896 33522199 -143451941 + AluSq SINE Alu 1 297 -16 197 373 65 0 chrX 33522482 33522635 -143451505 - MIR SINE MIR 0 262 100 358 271 243 0 chrX 33524528 33524672 -143449468 - MIR SINE MIR -34 228 50 242 257 136 36 chrX 33524699 33524839 -143449301 + L2 LINE L2 3159 3312 -1 24 0 0 0 chrX 33526293 33526317 -143447823 + AT_rich Low_complexity Low_complexity 1 24 0 2375 100 0 10 chrX 33526422 33526733 -143447407 + AluSq SINE Alu 1 308 -5 1444 170 21 24 chrX 33526939 33527227 -143446913 - AluJo SINE Alu -5 307 21 283 277 183 34 chrX 33528099 33528288 -143445852 - L1MC4a LINE L1 -1850 5958 5799 2374 97 3 0 chrX 33528288 33528596 -143445544 - AluSp SINE Alu -4 309 1 2298 104 0 0 chrX 33528596 33528894 -143445246 - AluSq SINE Alu -15 298 1 283 277 183 34 chrX 33528894 33528938 -143445202 - L1MC4a LINE L1 -2008 5800 5689 323 241 224 23 chrX 33529094 33529268 -143444872 + L1M4 LINE L1 3580 3788 -2358 2495 54 0 0 chrX 33529415 33529713 -143444427 - AluY SINE Alu -13 298 1 946 208 38 9 chrX 33529860 33530072 -143444068 - MER20 DNA MER1_type -1 218 1 501 271 107 43 chrX 33530095 33530469 -143443671 - L1ME LINE L1 -312 5809 5460 2064 151 0 0 chrX 33530469 33530773 -143443367 - AluJb SINE Alu -8 304 1 1656 212 0 0 chrX 33530774 33531066 -143443074 - AluJb SINE Alu -20 292 1 501 271 107 43 chrX 33531066 33531149 -143442991 - L1ME LINE L1 -660 5461 5308 342 302 77 48 chrX 33531416 33531573 -143442567 + L1M4 LINE L1 4910 5078 -1068 2154 125 0 0 chrX 33531573 33531869 -143442271 - AluSx SINE Alu -16 296 1 342 302 77 48 chrX 33531869 33531959 -143442181 + L1M4 LINE L1 5078 5164 -982 183 277 62 31 chrX 33532143 33532208 -143441932 + L2 LINE L2 2425 2491 -823 2187 101 17 0 chrX 33532400 33532687 -143441453 - AluSx SINE Alu -20 292 1 1963 164 3 6 chrX 33532891 33533069 -143441071 - AluJb SINE Alu -2 310 132 2443 77 7 0 chrX 33533069 33533366 -143440774 - AluSc SINE Alu -10 299 1 1963 164 3 6 chrX 33533366 33533498 -143440642 - AluJb SINE Alu -180 132 1 319 260 160 13 chrX 33533499 33533649 -143440491 - L1ME LINE L1 -376 5745 5574 247 275 28 28 chrX 33533872 33533981 -143440159 - L1ME LINE L1 -468 5653 5545 2009 153 3 3 chrX 33534230 33534531 -143439609 + AluJb SINE Alu 1 301 -11 2228 128 0 0 chrX 33534635 33534941 -143439199 + AluSx SINE Alu 1 306 -6 1771 120 7 66 chrX 33535015 33535316 -143438824 + AluJb SINE Alu 1 283 -29 2379 85 58 33 chrX 33535403 33535768 -143438372 + THE1C LTR MaLR 2 375 0 225 0 0 0 chrX 33535821 33535846 -143438294 + (TA)n Simple_repeat Simple_repeat 1 25 0 1110 73 0 53 chrX 33535846 33535997 -143438143 - AluSg/x SINE Alu -12 298 156 1618 85 0 0 chrX 33535997 33536196 -143437944 - AluSx SINE Alu -113 199 1 2856 112 18 59 chrX 33536209 33536698 -143437442 - LTR8A LTR ERV1 0 727 183 1642 75 44 49 chrX 33536698 33536924 -143437216 - MER30 DNA MER1_type -1 229 5 2856 112 18 59 chrX 33536924 33537100 -143437040 - LTR8A LTR ERV1 -544 183 1 2431 70 6 10 chrX 33537479 33537791 -143436349 - AluSq SINE Alu -2 311 1 293 93 19 0 chrX 33537802 33537856 -143436284 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 2280 197 51 30 chrX 33538043 33538575 -143435565 - MER21B LTR ERV1 -20 843 301 805 191 6 19 chrX 33538577 33538739 -143435401 - AluJb SINE Alu -16 296 137 1812 149 33 13 chrX 33538746 33539048 -143435092 - MER21B LTR ERV1 -553 310 3 537 231 43 0 chrX 33539636 33539753 -143434387 + MER92C LTR ERV1 188 309 -245 255 277 124 62 chrX 33539898 33539990 -143434150 + L2 LINE L2 3085 3170 -102 2358 88 0 0 chrX 33539990 33540287 -143433853 - AluSg SINE Alu -13 297 1 255 277 124 62 chrX 33540287 33540371 -143433769 + L2 LINE L2 3170 3272 0 525 227 189 0 chrX 33540508 33540693 -143433447 + MIR SINE MIR 23 242 -20 238 291 108 58 chrX 33541575 33541816 -143432324 - HAL1 LINE L1 -974 1533 1281 5834 226 82 32 chrX 33542101 33542399 -143431741 - L1ME LINE L1 -570 5530 5248 2232 96 14 0 chrX 33542399 33542690 -143431450 - AluSx SINE Alu -16 296 2 5834 226 82 32 chrX 33542690 33543098 -143431042 - L1ME LINE L1 -852 5248 4862 1668 163 21 14 chrX 33543098 33543386 -143430754 + AluJb SINE Alu 1 290 -22 5834 226 82 32 chrX 33543386 33544032 -143430108 - L1ME LINE L1 -1238 4862 4249 2308 102 0 37 chrX 33544032 33544355 -143429785 - AluSp SINE Alu -2 311 1 5834 226 82 32 chrX 33544355 33544662 -143429478 - L1ME LINE L1 -1851 4249 3959 1832 172 3 0 chrX 33544662 33544947 -143429193 - AluJo SINE Alu -26 286 1 5834 226 82 32 chrX 33544947 33544963 -143429177 - L1ME LINE L1 -2141 3959 3945 1954 111 42 29 chrX 33544963 33545270 -143428870 - AluSq SINE Alu -2 311 1 5834 226 82 32 chrX 33545270 33545615 -143428525 - L1ME LINE L1 -2155 3945 3619 2112 137 3 0 chrX 33545615 33545915 -143428225 - AluSq SINE Alu -12 301 1 5834 226 82 32 chrX 33545915 33546047 -143428093 - L1ME LINE L1 -2481 3619 3495 2372 100 0 0 chrX 33546047 33546356 -143427784 + AluSg SINE Alu 1 309 -1 5834 226 82 32 chrX 33546356 33546545 -143427595 - L1ME LINE L1 -2605 3495 3083 627 240 150 65 chrX 33546824 33546997 -143427143 - L1ME3A LINE L1 -232 5938 5781 1744 190 7 0 chrX 33546997 33547292 -143426848 - AluJo SINE Alu -15 297 1 627 240 150 65 chrX 33547292 33547638 -143426502 - L1ME3A LINE L1 -389 5781 5375 2136 109 0 45 chrX 33547741 33548083 -143426057 - AluSx SINE Alu 0 328 1 1640 156 57 18 chrX 33548093 33548376 -143425764 - AluJb SINE Alu -13 299 6 2044 113 3 60 chrX 33548452 33548771 -143425369 - AluSx SINE Alu -11 301 1 1683 221 59 137 chrX 33548823 33549043 -143425097 - L1ME LINE L1 -3890 2190 1954 3376 150 35 25 chrX 33549043 33549251 -143424889 - L1MD1 LINE L1 -8 6234 6030 2245 102 10 0 chrX 33549251 33549556 -143424584 - AluSx SINE Alu -4 308 1 3376 150 35 25 chrX 33549556 33549948 -143424192 - L1MD1 LINE L1 -212 6030 5628 1683 221 59 137 chrX 33549948 33550040 -143424100 - L1ME LINE L1 -4126 1954 1856 2318 110 0 0 chrX 33550040 33550349 -143423791 - AluSx SINE Alu -2 310 2 954 0 8 24 chrX 33550349 33550473 -143423667 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 2067 121 4 0 chrX 33550473 33550754 -143423386 - AluSx SINE Alu -30 282 1 270 0 0 0 chrX 33550755 33550785 -143423355 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2187 67 0 54 chrX 33550785 33551082 -143423058 - AluY SINE Alu -30 281 1 762 203 8 0 chrX 33551084 33551212 -143422928 - FLAM_A SINE Alu -3 130 2 1683 221 59 137 chrX 33551212 33551667 -143422473 - L1ME LINE L1 -4222 1858 1369 1026 127 19 0 chrX 33551667 33551824 -143422316 - L1MA2 LINE L1 0 6304 6145 564 97 0 0 chrX 33551825 33551897 -143422243 - U6 snRNA snRNA -18 89 18 1683 221 59 137 chrX 33551897 33552618 -143421522 - L1ME LINE L1 -4710 1370 613 2322 91 6 25 chrX 33552642 33552961 -143421179 - AluSq SINE Alu 0 313 1 369 305 37 32 chrX 33553341 33553531 -143420609 - L1ME LINE L1 -5878 192 2 * 644 189 57 11 chrX 33553530 33553705 -143420435 - L1M4 LINE L1 -2985 3161 2979 394 209 23 70 chrX 33553706 33553769 -143420371 - L1MA10 LINE L1 -3 6331 6275 1817 164 17 7 chrX 33553769 33554062 -143420078 + AluJo SINE Alu 5 300 -12 394 209 23 70 chrX 33554062 33554127 -143420013 - L1MA10 LINE L1 -59 6275 6209 453 220 37 59 chrX 33554130 33554281 -143419859 - L1M4 LINE L1 -2505 3641 3488 2090 146 7 0 chrX 33554281 33554589 -143419551 - AluSx SINE Alu -2 310 1 453 220 37 59 chrX 33554589 33554696 -143419444 - L1M4 LINE L1 -2658 3488 3310 1829 165 3 13 chrX 33555583 33555892 -143418248 - AluJb SINE Alu -6 306 1 333 231 110 67 chrX 33556243 33556385 -143417755 - L1ME LINE L1 -684 5978 5844 2431 88 3 0 chrX 33556385 33556693 -143417447 - AluSc SINE Alu 0 309 1 333 231 110 67 chrX 33556693 33556896 -143417244 - L1ME LINE L1 -818 5844 5606 2282 100 0 10 chrX 33556896 33557197 -143416943 - AluSx SINE Alu -14 298 1 333 231 110 67 chrX 33557197 33557216 -143416924 - L1ME LINE L1 -1056 5606 5589 42 0 0 0 chrX 33557240 33557282 -143416858 + AT_rich Low_complexity Low_complexity 1 42 0 1963 87 0 15 chrX 33557336 33557600 -143416540 - AluSx SINE Alu -52 260 1 2163 125 3 0 chrX 33557637 33557934 -143416206 - AluSq SINE Alu -15 298 1 759 289 108 25 chrX 33558000 33558564 -143415576 - L1ME LINE L1 -1476 5168 4558 627 218 42 36 chrX 33558591 33558756 -143415384 - MIR SINE MIR 0 262 97 536 236 64 81 chrX 33558763 33558855 -143415285 - L1ME LINE L1 -2098 4546 4454 2320 105 0 6 chrX 33558855 33559169 -143414971 - AluSx SINE Alu 0 312 1 536 236 64 81 chrX 33559169 33559373 -143414767 - L1ME LINE L1 -2190 4454 4255 8320 17 0 0 chrX 33559376 33560749 -143413391 - L1PA3 LINE L1 -1 6154 4780 4034 13 0 2 chrX 33560749 33561206 -143412934 + L1P LINE L1 4191 4646 -1500 399 281 78 22 chrX 33561217 33561448 -143412692 - L1ME LINE L1 -2383 4261 4018 546 243 32 0 chrX 33562036 33562166 -143411974 + MER2 DNA MER2_type 1 143 -96 402 197 0 0 chrX 33562157 33562218 -143411922 + MER2 DNA MER2_type 285 345 0 * 1605 262 134 24 chrX 33562220 33562309 -143411831 - HAL1 LINE L1 -375 2132 2054 1691 162 3 43 chrX 33562309 33562611 -143411529 - AluJo SINE Alu -22 290 1 1605 262 134 24 chrX 33562611 33563177 -143410963 - HAL1 LINE L1 -453 2054 1405 558 270 34 27 chrX 33563203 33563431 -143410709 - HERVL68 LTR ERVL -1798 1239 1075 528 198 269 18 chrX 33563431 33563598 -143410542 - MER68 LTR ERV1 -351 211 3 251 235 0 0 chrX 33563600 33563668 -143410472 - L1ME LINE L1 -4598 2227 2160 787 223 75 81 chrX 33563687 33563869 -143410271 - L1ME LINE L1 -6185 357 176 2007 148 0 0 chrX 33563869 33563880 -143410260 - AluSq SINE Alu -21 292 282 243 0 0 0 chrX 33563880 33563907 -143410233 + (TG)n Simple_repeat Simple_repeat 1 27 0 2007 148 0 0 chrX 33563907 33564186 -143409954 - AluSq SINE Alu -30 283 2 787 223 75 81 chrX 33564186 33564348 -143409792 - L1ME LINE L1 -6366 176 15 2355 90 0 13 chrX 33564488 33564822 -143409318 + AluSg SINE Alu 1 310 0 2339 98 0 0 chrX 33565033 33565330 -143408810 + AluSq SINE Alu 1 297 -16 216 200 0 0 chrX 33565581 33565626 -143408514 + (TG)n Simple_repeat Simple_repeat 2 46 0 1379 135 5 10 chrX 33565627 33565835 -143408305 - AluJb SINE Alu -20 292 86 275 305 112 22 chrX 33566340 33566563 -143407577 - HAL1 LINE L1 -838 1669 1427 662 260 23 34 chrX 33566716 33566893 -143407247 - MER68 LTR ERV1 -4 558 384 256 230 50 60 chrX 33566960 33567060 -143407080 - MER68 LTR ERV1 -202 360 262 2477 79 0 0 chrX 33567347 33567650 -143406490 - AluSg SINE Alu -7 303 1 231 114 0 0 chrX 33567988 33568023 -143406117 + (CA)n Simple_repeat Simple_repeat 2 36 0 1733 178 7 16 chrX 33570208 33570512 -143403628 + AluJb SINE Alu 1 301 -11 701 202 0 16 chrX 33570546 33570670 -143403470 - FLAM_C SINE Alu -15 128 7 2126 102 0 36 chrX 33570767 33571071 -143403069 - AluSq SINE Alu -18 295 3 689 86 0 11 chrX 33572113 33572206 -143401934 + Tigger2a DNA MER2_type 2 93 -341 * 1054 131 13 0 chrX 33572204 33572357 -143401783 + THE1B LTR MaLR 210 364 0 1911 166 7 0 chrX 33572677 33572979 -143401161 + AluJo SINE Alu 1 304 -8 892 299 53 19 chrX 33573354 33573421 -143400719 - HERVL LTR ERVL -2332 3322 3259 2623 111 8 24 chrX 33573421 33573791 -143400349 + THE1B LTR MaLR 1 364 0 892 299 53 19 chrX 33573791 33574044 -143400096 - HERVL LTR ERVL -2395 3259 2991 671 296 36 8 chrX 33574043 33574368 -143399772 - HERVL LTR ERVL -2338 3316 2948 * 597 254 113 17 chrX 33574387 33574564 -143399576 - HERVL LTR ERVL -2559 2437 2244 * 1223 293 20 6 chrX 33574558 33574916 -143399224 - HERVL LTR ERVL -2946 2050 1688 269 177 97 0 chrX 33574988 33575050 -143399090 + L1M1 LINE L1 2337 2404 -5161 1315 177 48 61 chrX 33575050 33575168 -143398972 + AluJo SINE Alu 1 119 -183 453 62 0 0 chrX 33575168 33575233 -143398907 + (CA)n Simple_repeat Simple_repeat 2 66 0 1315 177 48 61 chrX 33575233 33575274 -143398866 + AluJo SINE Alu 119 159 -143 360 0 0 0 chrX 33575274 33575314 -143398826 + (CA)n Simple_repeat Simple_repeat 2 41 0 1315 177 48 61 chrX 33575314 33575447 -143398693 + AluJo SINE Alu 159 290 -12 709 199 21 43 chrX 33575471 33575657 -143398483 - L1M4 LINE L1 -2073 4073 3892 1808 176 7 0 chrX 33575659 33575955 -143398185 - AluJo SINE Alu -14 298 1 773 183 23 15 chrX 33575957 33576088 -143398052 - AluJo/FLAM SINE Alu -179 133 2 286 289 22 30 chrX 33576089 33576224 -143397916 - L1MEc LINE L1 -4757 1639 1506 1225 305 61 65 chrX 33576280 33576573 -143397567 - L1MEc LINE L1 -5485 911 618 6675 64 32 0 chrX 33576573 33577458 -143396682 - L1PA8A LINE L1 -1 6130 5213 1225 305 61 65 chrX 33577458 33578053 -143396087 - L1MEc LINE L1 -5778 618 27 374 271 112 34 chrX 33578058 33578397 -143395743 - L1MDb LINE L1 -4989 1420 1162 1788 225 81 45 chrX 33578515 33578580 -143395560 - MLT1E2 LTR MaLR 0 626 565 2117 126 10 7 chrX 33578580 33578873 -143395267 - AluSx SINE Alu -18 294 1 1788 225 81 45 chrX 33578873 33579376 -143394764 - MLT1E2 LTR MaLR -61 565 60 4041 105 8 12 chrX 33579388 33579976 -143394164 + MER11C LTR ERVK 472 1057 -14 2421 103 0 3 chrX 33579993 33580322 -143393818 + HERVK11 LTR ERVK 1 328 -7625 * 4358 113 32 5 chrX 33580310 33580939 -143393201 + HERVK11 LTR ERVK 206 851 -7102 3155 83 38 5 chrX 33580939 33581531 -143392609 + HERVK11 LTR ERVK 1165 2710 -5243 * 8451 34 2 0 chrX 33581513 33582484 -143391656 + HERVK11 LTR ERVK 2912 3884 -4069 1013 107 0 0 chrX 33582458 33582598 -143391542 + HERVK11 LTR ERVK 4462 4601 -3352 * 3317 37 92 2 chrX 33582596 33583165 -143390975 + HERVK11 LTR ERVK 5525 6230 -1723 37464 87 17 13 chrX 33583166 33584996 -143389144 + L1PA6 LINE L1 14 1836 -4318 2248 102 3 3 chrX 33584996 33585290 -143388850 - AluY SINE Alu -17 294 1 37464 87 17 13 chrX 33585290 33587646 -143386494 + L1PA6 LINE L1 1836 4231 -1923 3900 104 4 4 chrX 33587646 33588157 -143385983 + MER9 LTR ERVK 1 511 0 37464 87 17 13 chrX 33588157 33590075 -143384065 + L1PA6 LINE L1 4231 6141 -13 258 143 0 0 chrX 33590084 33590133 -143384007 + (A)n Simple_repeat Simple_repeat 1 49 0 2426 65 14 140 chrX 33590133 33590222 -143383918 - THE1C-int LTR MaLR -1205 375 276 2044 130 7 13 chrX 33590222 33590530 -143383610 - AluSx SINE Alu -6 306 1 2426 65 14 140 chrX 33590530 33590869 -143383271 - THE1C-int LTR MaLR -1304 276 1 2717 91 16 42 chrX 33590869 33591254 -143382886 - THE1C LTR MaLR 0 375 1 682 132 0 0 chrX 33591256 33591347 -143382793 - AluJ/FLAM SINE Alu -220 92 2 1778 159 17 0 chrX 33591443 33591732 -143382408 + AluJo SINE Alu 5 298 -14 2278 104 0 0 chrX 33593642 33593940 -143380200 - AluSx SINE Alu -14 298 1 1714 167 11 0 chrX 33594747 33595042 -143379098 + AluJb SINE Alu 13 310 0 3636 161 34 29 chrX 33595188 33595722 -143378418 - MER44D DNA MER2_type -1882 605 194 2249 112 10 0 chrX 33595722 33596018 -143378122 + AluSx SINE Alu 1 299 -13 3636 161 34 29 chrX 33596018 33596100 -143378040 - MER44D DNA MER2_type -2293 194 114 232 287 66 22 chrX 33597098 33597234 -143376906 + L1MEd LINE L1 153 294 -5911 431 329 93 29 chrX 33597302 33597712 -143376428 + L1MEd LINE L1 388 823 -5382 * 3716 111 55 10 chrX 33597706 33598303 -143375837 + L1MC2 LINE L1 5653 6276 -68 2911 179 96 8 chrX 33598312 33599020 -143375120 + L1MEd LINE L1 2344 3113 -3102 2723 163 42 6 chrX 33599058 33599556 -143374584 + L1MD1 LINE L1 5727 6242 0 295 222 12 0 chrX 33599629 33599710 -143374430 + L1ME2 LINE L1 2193 2274 -4122 * 2799 222 55 40 chrX 33599706 33600590 -143373550 + L1ME2 LINE L1 3944 4844 -1371 1437 173 4 8 chrX 33600590 33600827 -143373313 - MER46A DNA MER2_type 0 236 1 2799 222 55 40 chrX 33600827 33600851 -143373289 + L1ME2 LINE L1 4844 4866 -1349 29 84 0 0 chrX 33601016 33601087 -143373053 + AT_rich Low_complexity Low_complexity 1 71 0 1767 133 23 53 chrX 33601120 33601420 -143372720 - AluJo SINE Alu -20 292 2 1930 195 157 31 chrX 33601476 33602094 -143372046 + L1ME2 LINE L1 4958 5497 -756 180 0 0 0 chrX 33602094 33602114 -143372026 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2137 120 0 7 chrX 33602119 33602403 -143371737 - AluSx SINE Alu -30 282 1 1930 195 157 31 chrX 33602403 33602928 -143371212 + L1ME2 LINE L1 5500 6253 0 467 176 92 13 chrX 33603370 33603523 -143370617 + L1MEd LINE L1 3143 3307 -2908 310 359 35 0 chrX 33603879 33604049 -143370091 - MER5A DNA MER1_type -1 188 3 627 246 155 5 chrX 33604105 33604312 -143369828 - MIR SINE MIR -12 250 13 279 288 240 7 chrX 33605245 33605391 -143368749 - MER5A DNA MER1_type 0 189 10 287 25 25 0 chrX 33605862 33605902 -143368238 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 340 309 110 31 chrX 33605942 33606133 -143368007 + HAL1 LINE L1 1328 1533 -974 363 222 81 0 chrX 33607028 33607127 -143367013 - MIR SINE MIR -121 141 35 2451 76 0 0 chrX 33607143 33607444 -143366696 - AluSg SINE Alu -9 301 1 302 235 143 34 chrX 33607585 33607704 -143366436 - L2 LINE L2 0 3272 3141 548 216 43 0 chrX 33607876 33607992 -143366148 - MER92C LTR ERV1 -246 308 188 1873 145 30 13 chrX 33608578 33608881 -143365259 + MER21B LTR ERV1 3 310 -553 778 195 6 19 chrX 33608888 33609047 -143365093 + AluJb SINE Alu 137 293 -19 1972 184 63 83 chrX 33609052 33609242 -143364898 + MER21B LTR ERV1 301 493 -370 2208 100 28 0 chrX 33609242 33609531 -143364609 - AluSp SINE Alu -16 297 1 1972 184 63 83 chrX 33609531 33609894 -143364246 + MER21B LTR ERV1 493 843 -20 2395 90 6 3 chrX 33610332 33610643 -143363497 - AluSx SINE Alu 0 312 1 364 264 181 21 chrX 33610887 33611080 -143363060 - L1ME LINE L1 -368 5753 5530 270 263 20 30 chrX 33611248 33611347 -143362793 - L1ME LINE L1 -2156 5652 5555 1626 106 12 27 chrX 33611451 33611636 -143362504 + MER41A LTR ERV1 303 484 -70 2192 108 7 0 chrX 33611636 33611961 -143362179 - AluSx SINE Alu 0 312 1 1626 106 12 27 chrX 33611961 33612031 -143362109 + MER41A LTR ERV1 484 554 0 380 271 57 64 chrX 33612103 33612383 -143361757 - L1MDa LINE L1 -3167 3373 3096 945 230 42 82 chrX 33612565 33612736 -143361404 - L2 LINE L2 0 3313 3137 2491 169 36 65 chrX 33612736 33613261 -143360879 - LTR54 LTR ERV1 0 510 1 945 230 42 82 chrX 33613261 33613468 -143360672 - L2 LINE L2 -176 3137 2950 443 289 18 0 chrX 33613567 33613681 -143360459 - L2 LINE L2 -286 3027 2912 2151 92 0 7 chrX 33613865 33614146 -143359994 + AluSx SINE Alu 1 279 -33 2028 120 46 0 chrX 33614898 33615181 -143358959 - AluSg SINE Alu -14 296 1 309 283 42 78 chrX 33615284 33615450 -143358690 - L1MDa LINE L1 -3980 2560 2401 2260 107 0 7 chrX 33615493 33615803 -143358337 - AluSg1 SINE Alu -1 308 1 1338 167 0 5 chrX 33615807 33616017 -143358123 + MER3 DNA MER1_type 1 209 0 2827 167 33 8 chrX 33616091 33616582 -143357558 + Tigger1 DNA MER2_type 1 503 -1915 2259 117 0 0 chrX 33616583 33616882 -143357258 + AluSx SINE Alu 1 299 -13 332 224 0 0 chrX 33616953 33617020 -143357120 + Tigger1 DNA MER2_type 1 67 -2351 5105 98 16 33 chrX 33617037 33617572 -143356568 + Tigger1 DNA MER2_type 494 1014 -1404 2210 123 0 3 chrX 33617572 33617881 -143356259 - AluSp SINE Alu 0 313 6 5105 98 16 33 chrX 33617881 33618111 -143356029 + Tigger1 DNA MER2_type 1014 1246 -1172 470 163 0 0 chrX 33618113 33618193 -143355947 + L1ME LINE L1 897 976 -5094 2324 110 0 0 chrX 33618199 33618500 -143355640 + AluSq SINE Alu 1 301 -12 1795 132 4 0 chrX 33618506 33618771 -143355369 + AluSx SINE Alu 39 304 -8 4909 99 42 42 chrX 33618771 33618907 -143355233 + L1MA2 LINE L1 2758 2893 -4672 2099 108 50 0 chrX 33618907 33619204 -143354936 + AluSx SINE Alu 1 312 0 4909 99 42 42 chrX 33619204 33619490 -143354650 + L1MA2 LINE L1 2893 3178 -4387 2177 105 28 0 chrX 33619490 33619776 -143354364 + AluSg SINE Alu 1 294 -16 4909 99 42 42 chrX 33619776 33619895 -143354245 + L1MA2 LINE L1 3178 3296 -4269 186 43 0 0 chrX 33619895 33619918 -143354222 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4909 99 42 42 chrX 33619918 33620188 -143353952 + L1MA2 LINE L1 3295 3571 -3994 4777 46 3 36 chrX 33620188 33620792 -143353348 + LTR10C LTR ERV1 1 584 -7 2146 196 28 8 chrX 33620812 33621281 -143352859 + L1MA2 LINE L1 3546 4023 -3542 * 7474 127 17 13 chrX 33621277 33621567 -143352573 + L1MA2 LINE L1 5458 5745 -1978 1928 141 3 28 chrX 33621567 33621887 -143352253 + AluJb SINE Alu 1 312 0 7474 127 17 13 chrX 33621887 33623844 -143350296 + L1MA2 LINE L1 5745 7711 -12 3864 127 12 46 chrX 33623944 33624476 -143349664 + Tigger1 DNA MER2_type 1785 2292 -126 584 173 135 0 chrX 33624476 33624580 -143349560 - FLAM_C SINE Alu -15 118 1 3864 127 12 46 chrX 33624580 33624703 -143349437 + Tigger1 DNA MER2_type 2292 2418 0 704 156 16 16 chrX 33624745 33624873 -143349267 - L1MD1 LINE L1 -4 6632 6505 * 870 172 48 88 chrX 33624872 33625006 -143349134 + L1MB4 LINE L1 5937 6058 -122 2495 78 3 0 chrX 33625006 33625313 -143348827 + AluSp SINE Alu 1 308 -5 870 172 48 88 chrX 33625313 33625428 -143348712 + L1MB4 LINE L1 6058 6176 -4 1751 216 8 16 chrX 33625448 33625818 -143348322 + MLT1A2 LTR MaLR 8 374 0 907 204 0 27 chrX 33625818 33626004 -143348136 - L1MD1 LINE L1 -118 6518 6338 788 165 165 6 chrX 33626006 33626182 -143347958 - L1MD1 LINE L1 -476 6277 6074 13827 123 23 2 chrX 33626184 33628171 -143345969 + ERVL-B3 LTR ERVL 3730 5757 -7 2848 194 7 61 chrX 33628171 33628693 -143345447 + MLT2B3 LTR ERVL 1 489 -65 1445 179 42 28 chrX 33628693 33628978 -143345162 + AluJb SINE Alu 1 289 -23 2848 194 7 61 chrX 33628978 33629041 -143345099 + MLT2B3 LTR ERVL 489 554 0 4518 198 60 40 chrX 33629045 33630032 -143344108 + MLT-int LTR MaLR 5 1010 -725 2631 155 12 0 chrX 33630156 33630569 -143343571 + MLT1A1-int LTR MaLR 1318 1735 0 2378 137 3 8 chrX 33630578 33630936 -143343204 + MLT1A1 LTR MaLR 10 365 0 7278 239 59 21 chrX 33630948 33631101 -143343039 - L1MD1 LINE L1 -723 6030 5884 2204 99 0 16 chrX 33631101 33631405 -143342735 - AluSq SINE Alu -14 299 1 7278 239 59 21 chrX 33631405 33632828 -143341312 - L1MD1 LINE L1 -869 5884 4323 1536 179 14 17 chrX 33632828 33633119 -143341021 + AluJb SINE Alu 1 290 -22 7278 239 59 21 chrX 33633119 33634010 -143340130 - L1MD1 LINE L1 -2430 4323 3467 2044 204 41 59 chrX 33634009 33634674 -143339466 - L1MD1 LINE L1 -4453 2087 1435 * 2198 141 82 24 chrX 33635038 33635499 -143338641 - L1MD1 LINE L1 -5071 1472 985 300 332 57 81 chrX 33635499 33635746 -143338394 - L1MD1 LINE L1 -5825 715 475 907 256 120 81 chrX 33636222 33636840 -143337300 - L1MD1 LINE L1 -5898 642 1 2948 236 116 19 chrX 33636997 33638075 -143336065 + L1MC4a LINE L1 5255 6437 -1371 1157 188 58 49 chrX 33638161 33638486 -143335654 - MER45B DNA AcHobo 0 1040 713 3008 189 17 15 chrX 33638582 33638635 -143335505 + MER6 DNA MER2_type 1 52 -813 3291 169 78 3 chrX 33638635 33639214 -143334926 + LTR26E LTR ERV1 1 622 0 3008 189 17 15 chrX 33639214 33639679 -143334461 + MER6 DNA MER2_type 52 520 -345 2225 185 60 137 chrX 33639679 33639969 -143334171 + LTR8A LTR ERV1 1 312 -415 2382 88 7 0 chrX 33639969 33640277 -143333863 - AluSg SINE Alu 0 310 1 2225 185 60 137 chrX 33640277 33640774 -143333366 + LTR8A LTR ERV1 312 727 0 918 143 0 19 chrX 33640774 33640935 -143333205 + MER6 DNA MER2_type 514 671 -194 15298 210 15 26 chrX 33640947 33641306 -143332834 - L1PB1 LINE L1 -1 6866 6505 423 0 0 0 chrX 33641306 33641353 -143332787 + (TA)n Simple_repeat Simple_repeat 1 47 0 15298 210 15 26 chrX 33641353 33641714 -143332426 - L1PB1 LINE L1 -362 6505 6142 2103 88 10 33 chrX 33641714 33642021 -143332119 - AluY SINE Alu -11 300 1 15298 210 15 26 chrX 33642021 33642085 -143332055 - L1PB1 LINE L1 -725 6142 6079 2372 96 7 0 chrX 33642085 33642388 -143331752 - AluSc SINE Alu -4 305 1 15298 210 15 26 chrX 33642388 33644506 -143329634 - L1PB1 LINE L1 -788 6079 3940 273 29 0 0 chrX 33644506 33644540 -143329600 + (TG)n Simple_repeat Simple_repeat 2 35 0 15298 210 15 26 chrX 33644540 33644551 -143329589 - L1PB1 LINE L1 -2927 3940 3930 2215 119 0 10 chrX 33644551 33644854 -143329286 + AluSx SINE Alu 2 301 -11 15298 210 15 26 chrX 33644854 33646579 -143327561 - L1PB1 LINE L1 -2937 3930 2228 2902 229 83 23 chrX 33646579 33647475 -143326665 - L1PB1 LINE L1 -5909 954 6 1411 104 5 9 chrX 33647482 33647694 -143326446 + MER6 DNA MER2_type 654 864 -1 2563 271 62 22 chrX 33647699 33648441 -143325699 - MER45C DNA AcHobo -176 777 2 1635 235 45 38 chrX 33648442 33649121 -143325019 + L1MC4 LINE L1 6621 7231 -730 836 185 7 0 chrX 33649127 33649262 -143324878 - AluJo SINE Alu -175 137 2 756 194 65 51 chrX 33649269 33649483 -143324657 + L1MC4a LINE L1 7215 7417 -391 934 184 6 12 chrX 33649483 33649651 -143324489 - MLT1C LTR MaLR 0 467 301 584 153 99 54 chrX 33649722 33649794 -143324346 + FLAM_A SINE Alu 6 86 -225 3493 193 8 69 chrX 33649794 33650529 -143323611 + LTR8 LTR ERV1 1 690 -1 584 153 99 54 chrX 33650529 33650567 -143323573 + FLAM_A SINE Alu 86 121 -190 500 208 162 63 chrX 33650583 33650968 -143323172 - MER34B LTR ERV1 -65 520 5 1889 139 7 42 chrX 33650976 33651285 -143322855 - MLT1C LTR MaLR -165 302 5 796 230 97 90 chrX 33651333 33651867 -143322273 + L1MC4 LINE L1 7505 8042 0 1058 177 146 81 chrX 33653255 33653639 -143320501 - LTR37A LTR ERV1 0 426 18 1785 104 0 0 chrX 33653676 33653907 -143320233 - AluSg/x SINE Alu -16 296 66 933 184 160 85 chrX 33655292 33655764 -143318376 + MER34C LTR ERV1 37 751 -36 4177 119 47 64 chrX 33655774 33656342 -143317798 + LTR8A LTR ERV1 1 556 -171 2226 101 3 10 chrX 33656342 33656638 -143317502 + AluSg1 SINE Alu 1 294 -15 4177 119 47 64 chrX 33656638 33656808 -143317332 + LTR8A LTR ERV1 556 727 0 237 267 17 0 chrX 33657149 33657209 -143316931 + LTR48B LTR ERV1 4 64 -580 1205 218 54 78 chrX 33657219 33657287 -143316853 + MER39 LTR ERV1 256 324 -383 2481 122 8 40 chrX 33657287 33657663 -143316477 + THE1B LTR MaLR 1 364 0 1205 218 54 78 chrX 33657663 33658057 -143316083 + MER39 LTR ERV1 324 707 0 468 0 0 0 chrX 33660175 33660227 -143313913 + (CA)n Simple_repeat Simple_repeat 2 53 0 218 355 30 46 chrX 33661117 33661314 -143312826 - L2 LINE L2 -443 2871 2678 795 159 0 0 chrX 33661830 33661981 -143312159 + CT-rich Low_complexity Low_complexity 2 152 0 1474 254 30 68 chrX 33661987 33662545 -143311595 - MER34 LTR ERV1 -5 537 1 466 211 216 65 chrX 33663688 33663782 -143310358 - MIR SINE MIR -25 237 159 1794 169 3 19 chrX 33663782 33664089 -143310051 + AluJo SINE Alu 1 302 -10 466 211 216 65 chrX 33664089 33664179 -143309961 - MIR SINE MIR -103 159 25 2187 33 0 0 chrX 33664974 33665218 -143308922 - L1PA3 LINE L1 0 6155 5912 2517 64 3 0 chrX 33665398 33665694 -143308446 + AluSp SINE Alu 1 297 -16 320 292 74 35 chrX 33665777 33666034 -143308106 - L1MEc LINE L1 -4199 2197 1931 1952 240 73 23 chrX 33666048 33666605 -143307535 + MER77 LTR ERV1 41 593 -14 2593 157 20 0 chrX 33666723 33667125 -143307015 - Tigger7 DNA MER2_type -323 410 1 863 168 17 23 chrX 33667152 33667325 -143306815 - MIR SINE MIR 0 262 91 1652 146 21 14 chrX 33667372 33667652 -143306488 + AluJo SINE Alu 1 282 -30 1072 62 23 0 chrX 33667670 33667799 -143306341 + AluY SINE Alu 1 132 -179 201 74 0 0 chrX 33667800 33667827 -143306313 + (TAA)n Simple_repeat Simple_repeat 2 28 0 201 94 0 0 chrX 33669525 33669557 -143304583 + (CAAAC)n Simple_repeat Simple_repeat 3 34 0 2205 126 101 130 chrX 33670157 33670627 -143303513 + LTR49 LTR ERV1 1 391 -151 1938 148 7 3 chrX 33670627 33670931 -143303209 - AluJo SINE Alu -7 305 1 2205 126 101 130 chrX 33670931 33671067 -143303073 + LTR49 LTR ERV1 391 529 -13 2478 82 0 0 chrX 33671240 33671544 -143302596 + AluSg SINE Alu 1 304 -6 343 261 45 37 chrX 33671588 33671659 -143302481 + MIR SINE MIR 124 198 -64 2347 102 3 0 chrX 33671659 33671963 -143302177 + AluSq SINE Alu 1 305 -8 343 261 45 37 chrX 33671963 33672025 -143302115 + MIR SINE MIR 198 258 -4 638 213 67 13 chrX 33672222 33672372 -143301768 + MER5A DNA MER1_type 6 163 -26 4771 114 23 89 chrX 33672552 33673393 -143300747 + LTR1 LTR ERV1 1 785 0 2213 109 3 0 chrX 33673557 33673850 -143300290 - AluSg SINE Alu -16 294 1 2272 139 109 24 chrX 33674249 33674366 -143299774 + LOR1b LTR ERV1 3 109 -352 1964 133 69 39 chrX 33674366 33674728 -143299412 + THE1C LTR MaLR 1 373 -2 2272 139 109 24 chrX 33674728 33675033 -143299107 + LOR1b LTR ERV1 109 461 0 2798 78 26 0 chrX 33675109 33675455 -143298685 - L1PA7 LINE L1 0 6154 5800 1782 172 59 56 chrX 33675821 33676416 -143297724 - L1MC5 LINE L1 -30 7931 7264 2271 169 68 56 chrX 33677144 33677641 -143296499 - MLT1D LTR MaLR 0 505 3 1881 185 53 24 chrX 33677956 33678697 -143295443 - L1MDa LINE L1 -1880 4660 1154 1241 223 75 121 chrX 33678701 33679463 -143294677 + LTR8A LTR ERV1 1 727 0 5067 234 31 35 chrX 33679463 33680529 -143293611 - L1M4 LINE L1 -2108 4038 2978 1982 147 37 0 chrX 33680529 33680855 -143293285 - L1MB4 LINE L1 -6 6174 5837 5067 234 31 35 chrX 33680855 33681344 -143292796 - L1M4 LINE L1 -3168 2978 2489 212 29 0 59 chrX 33681802 33681836 -143292304 + (TATG)n Simple_repeat Simple_repeat 2 33 0 2409 88 0 0 chrX 33681921 33682218 -143291922 - AluSc SINE Alu -12 297 1 977 277 49 20 chrX 33682433 33682819 -143291321 + MLT1G3 LTR MaLR 5 467 -128 1853 200 118 35 chrX 33682858 33683309 -143290831 + MER77 LTR ERV1 114 601 -4 439 223 91 25 chrX 33683319 33683440 -143290700 + MLT1G3 LTR MaLR 421 549 0 200 310 14 28 chrX 33683484 33683555 -143290585 + L2 LINE L2 3199 3268 -4 356 252 136 39 chrX 33683793 33683948 -143290192 + MIR SINE MIR 51 220 -42 1140 333 104 29 chrX 33684948 33685283 -143288857 + L3 LINE CR1 722 1030 -547 1967 156 0 3 chrX 33685283 33685571 -143288569 - AluJo SINE Alu -25 287 1 1140 333 104 29 chrX 33685571 33686030 -143288110 + L3 LINE CR1 1030 1576 -1 1650 210 133 26 chrX 33686202 33686631 -143287509 - MLT1D LTR MaLR -26 479 5 483 328 74 12 chrX 33686727 33686971 -143287169 + MIR SINE MIR 2 260 -2 343 361 9 0 chrX 33687049 33687157 -143286983 - L2 LINE L2 -10 3262 3154 1225 226 9 0 chrX 33687475 33687705 -143286435 - LTR16C LTR ERVL -3 488 257 232 233 133 0 chrX 33687752 33687812 -143286328 - LTR16C LTR ERVL -348 143 76 12658 145 24 28 chrX 33688037 33688389 -143285751 + L1MA8 LINE L1 2872 3224 -2922 2369 98 3 9 chrX 33688389 33688704 -143285436 + AluSq SINE Alu 1 313 0 12658 145 24 28 chrX 33688704 33689085 -143285055 + L1MA8 LINE L1 3224 3605 -2541 3038 137 9 0 chrX 33689085 33689508 -143284632 + MSTA LTR MaLR 1 427 -1 12658 145 24 28 chrX 33689508 33691112 -143283028 + L1MA8 LINE L1 3605 5199 -947 1589 132 32 12 chrX 33691112 33691362 -143282778 + MER4D LTR ERV1 1 255 -617 242 157 0 20 chrX 33692638 33692689 -143281451 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4464 107 1 39 chrX 33693166 33693839 -143280301 + MER4D LTR ERV1 225 872 0 5965 148 15 22 chrX 33693839 33693981 -143280159 + L1MA8 LINE L1 5196 5337 -954 2705 82 35 16 chrX 33693981 33694349 -143279791 - THE1C LTR MaLR 0 375 1 5965 148 15 22 chrX 33694349 33695304 -143278836 + L1MA8 LINE L1 5337 6291 0 470 333 7 7 chrX 33695592 33695736 -143278404 - MIR SINE MIR -117 145 2 260 290 53 30 chrX 33695884 33696015 -143278125 + L2 LINE L2 3139 3272 0 339 197 0 0 chrX 33696557 33696618 -143277522 + L2 LINE L2 3251 3311 -2 2619 17 0 3 chrX 33696785 33697075 -143277065 - AluY SINE Alu -22 289 1 2370 224 66 19 chrX 33697496 33698014 -143276126 + MLT1F LTR MaLR 1 542 0 339 270 52 33 chrX 33698144 33698341 -143275799 + MIR SINE MIR 6 260 -2 3405 186 38 15 chrX 33698474 33699152 -143274988 - L1MB8 LINE L1 -13 6165 5472 3150 219 78 44 chrX 33699152 33700098 -143274042 - L1MB8 LINE L1 -1379 4767 3790 501 183 5 115 chrX 33700106 33700314 -143273826 - L1MB8 LINE L1 -3456 2690 2506 361 189 95 0 chrX 33700331 33700405 -143273735 + MLT1D LTR MaLR 5 85 -420 228 304 163 11 chrX 33700598 33700690 -143273450 + MIR SINE MIR 37 142 -66 5287 202 16 24 chrX 33701345 33701960 -143272180 - MER45B DNA AcHobo -546 1035 417 2228 101 3 0 chrX 33701960 33702256 -143271884 - AluSx SINE Alu -15 297 1 5287 202 16 24 chrX 33702256 33702291 -143271849 - MER45B DNA AcHobo -1164 417 383 2186 115 0 0 chrX 33702291 33702586 -143271554 + AluSx SINE Alu 1 295 -17 5287 202 16 24 chrX 33702586 33702977 -143271163 - MER45B DNA AcHobo -1198 383 1 2438 70 7 0 chrX 33703217 33703516 -143270624 + AluY SINE Alu 2 302 -9 2246 143 65 0 chrX 33703516 33703902 -143270238 - L1M4 LINE L1 -469 6207 5797 8033 24 8 310 chrX 33703902 33705834 -143268306 - SVA Other Other 0 1386 38 450 0 0 0 chrX 33705838 33705888 -143268252 + (GGGAGA)n Simple_repeat Simple_repeat 6 55 0 222 244 0 24 chrX 33705930 33706012 -143268128 + T-rich Low_complexity Low_complexity 2 81 0 1871 204 27 2 chrX 33706038 33706444 -143267696 - L1M4 LINE L1 -1736 4908 4493 1725 162 196 40 chrX 33706458 33706932 -143267208 - LTR10A LTR ERV1 -61 548 1 1142 195 6 88 chrX 33706939 33707196 -143266944 - L1M4 LINE L1 -2160 4484 4256 2159 120 16 0 chrX 33707196 33707504 -143266636 - AluSq SINE Alu 0 313 1 1142 195 6 88 chrX 33707504 33707564 -143266576 - L1M4 LINE L1 -2388 4256 4193 1591 200 11 7 chrX 33707565 33707850 -143266290 - L1M4 LINE L1 -5589 953 668 2619 215 15 71 chrX 33707882 33708270 -143265870 - L1M4 LINE L1 -5863 679 348 2153 95 0 70 chrX 33708270 33708585 -143265555 - AluSg SINE Alu -17 293 1 2619 215 15 71 chrX 33708585 33708912 -143265228 - L1M4 LINE L1 -6194 348 4 2370 91 0 7 chrX 33709137 33709445 -143264695 - AluSg SINE Alu -4 306 1 1682 262 78 15 chrX 33709669 33710131 -143264009 - LTR16C LTR ERVL 0 491 1 352 290 72 57 chrX 33711558 33711751 -143262389 + MIR SINE MIR 11 206 -56 188 150 50 0 chrX 33712136 33712176 -143261964 - MIR3 SINE MIR -1 207 166 184 231 26 0 chrX 33712207 33712246 -143261894 - L3 LINE CR1 -143 1434 1395 226 241 17 0 chrX 33712288 33712346 -143261794 + MIR SINE MIR 134 192 -70 890 292 159 23 chrX 33712713 33713186 -143260954 - L3 LINE CR1 -638 939 403 199 262 60 24 chrX 33713443 33713527 -143260613 - L3 LINE CR1 -1164 413 327 2007 137 3 3 chrX 33713608 33713901 -143260239 + AluSp SINE Alu 3 295 -18 471 275 43 24 chrX 33713901 33714112 -143260028 - L1ME LINE L1 -309 5812 5598 348 284 131 55 chrX 33714115 33714351 -143259789 - L1ME LINE L1 -555 5566 5313 458 270 103 64 chrX 33714511 33714870 -143259270 + L1M4 LINE L1 4943 5315 -831 34 72 0 0 chrX 33715491 33715560 -143258580 + AT_rich Low_complexity Low_complexity 1 69 0 380 277 99 29 chrX 33715606 33715848 -143258292 - L2 LINE L2 -1265 2049 1791 2518 69 0 3 chrX 33715853 33716157 -143257983 - AluSp SINE Alu -10 303 1 432 262 10 0 chrX 33716261 33716364 -143257776 + L2 LINE L2 3197 3300 -13 2740 204 68 72 chrX 33716928 33717758 -143256382 + LTR1B LTR ERV1 1 826 0 890 203 43 6 chrX 33717919 33718082 -143256058 + MER58A DNA MER1_type 42 210 -14 473 212 267 79 chrX 33718101 33718160 -143255980 + LTR16A1 LTR ERVL 2 49 -408 6861 48 0 13 chrX 33718160 33718950 -143255190 + LTR17 LTR ERV1 1 780 0 473 212 267 79 chrX 33718950 33719268 -143254872 + LTR16A1 LTR ERVL 49 450 -7 359 193 0 0 chrX 33719476 33719533 -143254607 + MER2 DNA MER2_type 1 57 -288 344 98 82 16 chrX 33720491 33720544 -143253596 - LTR23 LTR ERV1 0 437 381 312 130 0 0 chrX 33720544 33720590 -143253550 + Alu SINE Alu 1 46 -256 321 169 70 104 chrX 33720610 33720802 -143253338 - LTR23 LTR ERV1 -6 439 249 913 193 39 6 chrX 33720877 33721058 -143253082 + LTR8 LTR ERV1 10 196 -495 2845 171 27 63 chrX 33721079 33721714 -143252426 - LTR9 LTR ERV1 0 612 2 * 3630 110 79 22 chrX 33721714 33722297 -143251843 - MER41B LTR ERV1 -19 616 1 2310 175 19 86 chrX 33722297 33722333 -143251807 + LTR8 LTR ERV1 191 228 -463 3101 170 98 50 chrX 33722333 33723027 -143251113 + LTR8A LTR ERV1 1 727 0 2310 175 19 86 chrX 33723027 33723527 -143250613 + LTR8 LTR ERV1 228 691 0 476 191 0 12 chrX 33723527 33723609 -143250531 - LTR56 LTR ERV1 -340 105 25 224 271 0 33 chrX 33724529 33724621 -143249519 + CT-rich Low_complexity Low_complexity 1 88 0 4652 100 9 2 chrX 33725413 33726043 -143248097 + LTR24C LTR ERV1 1 635 0 217 268 28 14 chrX 33726754 33726825 -143247315 + CT-rich Low_complexity Low_complexity 4 75 0 384 22 0 0 chrX 33727274 33727319 -143246821 + (TG)n Simple_repeat Simple_repeat 2 46 0 2252 94 129 43 chrX 33727771 33727812 -143246328 - MSTA LTR MaLR 0 428 392 2284 115 7 0 chrX 33727812 33728116 -143246024 + AluSq SINE Alu 1 306 -7 2252 94 129 43 chrX 33728116 33728468 -143245672 - MSTA LTR MaLR -36 392 1 242 138 0 121 chrX 33729259 33729317 -143244823 + MER119 DNA MER1_type 127 177 -406 1980 143 3 0 chrX 33729319 33729605 -143244535 - AluJo SINE Alu -11 301 15 2258 177 2 2 chrX 33729624 33730037 -143244103 + MER119 DNA MER1_type 171 583 0 761 173 24 0 chrX 33730089 33730216 -143243924 - FLAM_A SINE Alu -3 130 1 1725 293 103 27 chrX 33730217 33730465 -143243675 + L2 LINE L2 2228 2456 -857 1275 181 9 0 chrX 33730465 33730686 -143243454 - MER58A DNA MER1_type -1 223 1 1725 293 103 27 chrX 33730686 33731455 -143242685 + L2 LINE L2 2456 3304 -9 261 0 0 0 chrX 33731455 33731484 -143242656 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 839 291 62 34 chrX 33731491 33731993 -143242147 - LTR33 LTR ERVL -1 520 5 2948 20 6 0 chrX 33732311 33732657 -143241483 - L1PA4 LINE L1 -2 6153 5806 1611 220 141 17 chrX 33733126 33733608 -143240532 - MLT1F LTR MaLR 0 542 1 284 289 0 40 chrX 33733864 33733940 -143240200 - MER5A DNA MER1_type -3 186 114 * 386 264 208 8 chrX 33733889 33734014 -143240126 + MER5B DNA MER1_type 27 176 -2 317 263 170 24 chrX 33734607 33734896 -143239244 + L1MCc LINE L1 34 364 -6059 2890 77 0 3 chrX 33735122 33735498 -143238642 - THE1C LTR MaLR 0 375 1 1693 257 77 25 chrX 33735571 33736085 -143238055 + L1MCc LINE L1 818 1304 -5637 5066 91 15 1 chrX 33736085 33736764 -143237376 + LTR12 LTR ERV1 1 688 0 1693 257 77 25 chrX 33736764 33737688 -143236452 + L1MCc LINE L1 1304 2436 -4505 706 184 29 29 chrX 33737688 33737789 -143236351 - L1M4 LINE L1 -846 5300 5200 2503 87 0 0 chrX 33737789 33738098 -143236042 - AluSg SINE Alu -1 309 1 706 184 29 29 chrX 33738098 33738203 -143235937 - L1M4 LINE L1 -945 5201 5094 * 3367 224 36 30 chrX 33738202 33738703 -143235437 - L1M4 LINE L1 -2060 4086 3589 2282 74 11 0 chrX 33738703 33738988 -143235152 + AluSp SINE Alu 1 288 -25 311 0 26 0 chrX 33738992 33739031 -143235109 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 3367 224 36 30 chrX 33739031 33739560 -143234580 - L1M4 LINE L1 -2559 3587 3042 2182 123 3 13 chrX 33739560 33739869 -143234271 - AluSx SINE Alu -6 306 1 3367 224 36 30 chrX 33739869 33739951 -143234189 - L1M4 LINE L1 -3104 3042 2962 11355 106 62 139 chrX 33739961 33740292 -143233848 - Tigger1 DNA MER2_type 0 2418 2063 2207 136 0 0 chrX 33740292 33740602 -143233538 - AluSx SINE Alu -2 310 1 11355 106 62 139 chrX 33740602 33741227 -143232913 - Tigger1 DNA MER2_type -355 2063 1391 2227 121 0 0 chrX 33741227 33741534 -143232606 - AluSc SINE Alu -2 307 1 11355 106 62 139 chrX 33741534 33742999 -143231141 - Tigger1 DNA MER2_type -1027 1391 211 210 37 0 0 chrX 33742999 33743026 -143231114 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 11355 106 62 139 chrX 33743026 33743222 -143230918 - Tigger1 DNA MER2_type -2207 211 1 1376 190 95 3 chrX 33743222 33743612 -143230528 - L1M4 LINE L1 -3193 2953 2528 * 3016 218 15 12 chrX 33743611 33744368 -143229772 + L1MC4a LINE L1 6149 6356 -3 2591 55 0 3 chrX 33744905 33745217 -143228923 + AluY SINE Alu 1 311 0 300 281 66 54 chrX 33745301 33745468 -143228672 - MIR SINE MIR -59 203 35 1585 163 41 58 chrX 33745850 33746145 -143227995 - AluJo SINE Alu -20 292 3 300 143 0 0 chrX 33746361 33746417 -143227723 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 2602 39 0 16 chrX 33746458 33746770 -143227370 - AluY SINE Alu -4 307 1 6429 118 26 15 chrX 33746914 33747630 -143226510 - L1MA4A LINE L1 -13 6290 5584 2186 112 6 16 chrX 33747630 33747943 -143226197 - AluSx SINE Alu 0 312 3 6429 118 26 15 chrX 33747943 33748934 -143225206 - L1MA4A LINE L1 -719 5584 4559 206 264 64 79 chrX 33748955 33749095 -143225045 - MIR SINE MIR -31 231 94 208 259 0 37 chrX 33749107 33749161 -143224979 + L2 LINE L2 3221 3272 0 283 253 11 58 chrX 33749217 33749304 -143224836 + MIR SINE MIR 3 85 -177 710 239 211 7 chrX 33749304 33749588 -143224552 - LTR33 LTR ERVL 0 521 180 554 286 101 0 chrX 33749601 33749769 -143224371 + MIR SINE MIR 29 213 -49 363 322 17 9 chrX 33750279 33750394 -143223746 + MIR SINE MIR 33 148 -114 1194 159 4 62 chrX 33750416 33750642 -143223498 + AluJo SINE Alu 87 299 -13 250 80 40 0 chrX 33751093 33751143 -143222997 + A-rich Low_complexity Low_complexity 1 52 0 304 328 45 22 chrX 33751466 33751528 -143222612 + MIR SINE MIR 105 164 -98 2076 92 0 34 chrX 33751528 33751702 -143222438 - AluSx SINE Alu 0 310 149 315 0 0 0 chrX 33751702 33751737 -143222403 + (TA)n Simple_repeat Simple_repeat 2 36 0 2076 92 0 34 chrX 33751737 33751882 -143222258 - AluSx SINE Alu -161 149 1 304 328 45 22 chrX 33751882 33751952 -143222188 + MIR SINE MIR 164 241 -21 316 297 90 0 chrX 33752030 33752141 -143221999 + MIR SINE MIR 79 199 -63 525 146 91 9 chrX 33752622 33752732 -143221408 - L1MA10 LINE L1 -7 6327 6209 2337 196 79 36 chrX 33752733 33753587 -143220553 - L1ME1 LINE L1 -185 6050 5163 569 223 69 0 chrX 33753584 33753759 -143220381 - L1ME1 LINE L1 -2174 4041 3855 * 2850 154 42 20 chrX 33753760 33754587 -143219553 + MER54A LTR ERVL 1 644 0 6202 239 83 31 chrX 33754616 33754706 -143219434 - L1ME1 LINE L1 -2377 3838 3754 1926 164 15 50 chrX 33754706 33755109 -143219031 - MLT1B LTR MaLR -1 389 1 6202 239 83 31 chrX 33755109 33755778 -143218362 - L1ME1 LINE L1 -2461 3754 3121 2399 102 0 0 chrX 33755778 33756083 -143218057 + AluSx SINE Alu 1 305 -7 6202 239 83 31 chrX 33756083 33756519 -143217621 - L1ME1 LINE L1 -3094 3121 2709 3887 72 14 2 chrX 33756519 33757036 -143217104 - L1PA14 LINE L1 0 6161 5639 6202 239 83 31 chrX 33757036 33757301 -143216839 - L1ME1 LINE L1 -3506 2709 2459 1969 150 35 0 chrX 33757301 33757588 -143216552 - AluSx SINE Alu -15 297 1 6202 239 83 31 chrX 33757588 33758461 -143215679 - L1ME1 LINE L1 -3756 2459 1633 2209 117 0 10 chrX 33758461 33758769 -143215371 - AluSx SINE Alu -7 305 1 6202 239 83 31 chrX 33758769 33760089 -143214051 - L1ME1 LINE L1 -4582 1633 34 2163 239 56 18 chrX 33760344 33760913 -143213227 - MLT1E LTR MaLR 0 593 3 309 158 37 0 chrX 33760957 33761039 -143213101 + (TA)n Simple_repeat Simple_repeat 1 85 0 324 263 0 32 chrX 33761042 33761137 -143213003 + L1MC4 LINE L1 6612 6703 -1339 327 349 0 0 chrX 33761449 33761532 -143212608 - L2 LINE L2 -5 3267 3185 365 176 27 14 chrX 33761590 33761664 -143212476 + L2 LINE L2 3235 3309 -4 247 389 62 0 chrX 33762266 33762379 -143211761 - L2 LINE L2 0 3272 3153 342 248 0 7 chrX 33762384 33762496 -143211644 + MER91A DNA MER1_type 1 189 -1 403 283 184 42 chrX 33762960 33763172 -143210968 + MIR SINE MIR 21 262 0 295 271 12 65 chrX 33763360 33763438 -143210702 + L1M4 LINE L1 23 89 -6453 1939 77 106 0 chrX 33763438 33763712 -143210428 + AluSg1 SINE Alu 1 303 -6 295 271 12 65 chrX 33763712 33763803 -143210337 + L1M4 LINE L1 89 183 -6359 299 326 34 7 chrX 33763842 33763989 -143210151 + L1M4 LINE L1 369 519 -6027 3564 261 17 2 chrX 33764079 33765247 -143208893 + L1M4 LINE L1 3293 4478 -2166 4178 189 21 14 chrX 33765260 33765608 -143208532 - MER21B LTR ERV1 -6 857 513 2357 75 0 37 chrX 33765608 33765929 -143208211 + AluSq SINE Alu 1 309 -4 4178 189 21 14 chrX 33765929 33766389 -143207751 - MER21B LTR ERV1 -350 513 43 393 222 0 50 chrX 33766387 33766459 -143207681 - MER21B LTR ERV1 -769 94 27 * 423 0 0 0 chrX 33766459 33766506 -143207634 + (TG)n Simple_repeat Simple_repeat 2 48 0 393 222 0 50 chrX 33766506 33766532 -143207608 - MER21B LTR ERV1 -836 27 1 886 371 0 0 chrX 33766539 33766587 -143207553 + L1M4 LINE L1 4473 4457 -2187 2944 108 2 21 chrX 33766587 33766950 -143207190 + MSTA LTR MaLR 2 370 -58 234 0 0 0 chrX 33766950 33766976 -143207164 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 2178 97 4 0 chrX 33766978 33767257 -143206883 - AluSg SINE Alu -30 280 1 2944 108 2 21 chrX 33767257 33767325 -143206815 + MSTA LTR MaLR 371 428 0 886 371 0 0 chrX 33767325 33767567 -143206573 + L1M4 LINE L1 4456 4740 -1904 2446 70 0 0 chrX 33767567 33767866 -143206274 + AluY SINE Alu 1 299 -12 2253 105 3 13 chrX 33767885 33768191 -143205949 + AluY SINE Alu 1 303 -8 258 81 0 0 chrX 33768191 33768228 -143205912 + (TA)n Simple_repeat Simple_repeat 1 37 0 512 110 0 0 chrX 33768255 33768328 -143205812 + AluSc SINE Alu 229 301 -8 3787 178 35 3 chrX 33768329 33769108 -143205032 + L1MB7 LINE L1 5290 6093 -91 880 192 19 0 chrX 33769108 33769307 -143204833 + AluJo SINE Alu 123 324 0 241 235 0 0 chrX 33769355 33769423 -143204717 + L1MB7 LINE L1 6117 6184 0 2386 94 3 3 chrX 33769563 33769872 -143204268 + AluSx SINE Alu 1 309 -3 313 291 78 0 chrX 33772385 33772488 -143201652 - L2 LINE L2 0 3272 3162 1450 264 58 10 chrX 33772803 33773216 -143200924 - LTR16A LTR ERVL 0 450 18 568 182 38 23 chrX 33773607 33773739 -143200401 - MER94 DNA DNA 0 134 1 342 300 0 33 chrX 33773751 33773871 -143200269 + MARNA DNA Mariner 61 176 -410 4043 182 88 11 chrX 33776000 33776782 -143197358 - MER21B LTR ERV1 -21 842 1 921 212 10 25 chrX 33776834 33777032 -143197108 + LTR16A LTR ERVL 243 437 -13 2302 109 0 0 chrX 33777739 33778041 -143196099 - AluSq SINE Alu -11 302 1 2320 89 0 0 chrX 33778410 33778701 -143195439 - AluSx SINE Alu -6 306 16 378 0 0 0 chrX 33779307 33779349 -143194791 + (CA)n Simple_repeat Simple_repeat 2 43 0 9050 200 66 64 chrX 33779366 33781799 -143192341 - L1MC4a LINE L1 -3 7805 5366 375 105 0 0 chrX 33781799 33781856 -143192284 + (CA)n Simple_repeat Simple_repeat 2 58 0 9050 200 66 64 chrX 33781856 33781920 -143192220 - L1MC4a LINE L1 -2442 5366 5304 1073 148 0 0 chrX 33781939 33782110 -143192030 - AluSg/x SINE Alu 0 304 134 2432 73 0 3 chrX 33782110 33782410 -143191730 - AluY SINE Alu -12 299 1 23 68 0 0 chrX 33782410 33782454 -143191686 + AT_rich Low_complexity Low_complexity 1 44 0 951 283 89 38 chrX 33782516 33783379 -143190761 - L1MC4a LINE L1 -872 5274 4368 2462 207 30 42 chrX 33783410 33784032 -143190108 - L1ME1 LINE L1 -1 6234 5620 2433 144 54 0 chrX 33784044 33784434 -143189706 - MER61C LTR ERV1 -10 424 14 272 193 0 0 chrX 33784406 33784463 -143189677 - LTR28 LTR ERV1 -963 57 1 * 1189 205 11 19 chrX 33784466 33784709 -143189431 - L1ME1 LINE L1 -615 5620 5378 1701 156 27 27 chrX 33784709 33785010 -143189130 - AluJo SINE Alu -11 301 1 1189 205 11 19 chrX 33785010 33785034 -143189106 - L1ME1 LINE L1 -857 5378 5355 345 256 191 32 chrX 33785026 33785156 -143188984 - L1ME1 LINE L1 -1603 4612 4504 * 2281 105 3 0 chrX 33785156 33785452 -143188688 - AluSq SINE Alu -16 297 1 345 256 191 32 chrX 33785452 33785661 -143188479 - L1ME1 LINE L1 -1711 4504 4219 2366 153 20 112 chrX 33785661 33786205 -143187935 - MLT1D LTR MaLR -10 495 2 1668 276 69 16 chrX 33786209 33786716 -143187424 - L1ME1 LINE L1 -5827 569 36 290 186 0 51 chrX 33786815 33786874 -143187266 - L2 LINE L2 -16 3256 3201 265 296 31 41 chrX 33787305 33787403 -143186737 - MIR SINE MIR -132 130 34 212 271 120 90 chrX 33787941 33788074 -143186066 - L2 LINE L2 0 3272 3136 2318 119 72 78 chrX 33788263 33788724 -143185416 - MLT1C LTR MaLR -9 458 1 1231 291 71 3 chrX 33788724 33789116 -143185024 + LTR16A LTR ERVL 32 450 0 613 266 21 31 chrX 33789159 33789351 -143184789 - L2 LINE L2 -446 2868 2679 808 163 7 0 chrX 33789768 33789936 -143184204 + FRAM SINE Alu 35 176 0 635 194 9 0 chrX 33789939 33790154 -143183986 + GA-rich Low_complexity Low_complexity 1 216 0 247 375 47 23 chrX 33790216 33790344 -143183796 - MER102b DNA MER1_type -3 338 208 772 299 100 0 chrX 33790406 33790687 -143183453 + L2 LINE L2 2823 3131 -182 217 238 159 0 chrX 33790913 33790976 -143183164 + L2 LINE L2 3180 3252 -61 2277 103 3 12 chrX 33790989 33791318 -143182822 - LTR17 LTR ERV1 -454 326 1 2227 63 3 27 chrX 33791318 33791617 -143182523 - HERV17 LTR ERV1 0 8626 8335 335 23 91 0 chrX 33791607 33791651 -143182489 - HERV17 LTR ERV1 -1078 7548 7501 * 14923 53 3 0 chrX 33791642 33793825 -143180315 - HERV17 LTR ERV1 -1479 7147 3293 298 281 37 0 chrX 33793825 33793907 -143180233 + L2 LINE L2 3229 3313 0 415 267 76 9 chrX 33794741 33794846 -143179294 + MIR SINE MIR 17 128 -134 404 292 45 0 chrX 33795031 33795185 -143178955 - MER103 DNA DNA -5 161 1 23 54 0 0 chrX 33795418 33795455 -143178685 + AT_rich Low_complexity Low_complexity 1 37 0 314 315 88 42 chrX 33796440 33796656 -143177484 + L1ME1 LINE L1 7 232 -5887 569 320 62 59 chrX 33796890 33797568 -143176572 + L1ME1 LINE L1 578 1257 -4862 457 309 45 27 chrX 33797594 33797996 -143176144 + L1ME1 LINE L1 1328 1736 -4574 262 289 39 26 chrX 33798061 33798217 -143175923 + L1ME1 LINE L1 4240 4397 -1732 * 2762 118 9 41 chrX 33798214 33798308 -143175832 - L1MA6 LINE L1 -253 6047 5952 2177 109 7 0 chrX 33798308 33798601 -143175539 - AluSq SINE Alu -18 295 1 2762 118 9 41 chrX 33798601 33798947 -143175193 - L1MA6 LINE L1 -348 5952 5621 1633 101 18 0 chrX 33798947 33799172 -143174968 + L1MA6 LINE L1 6069 6300 0 2288 226 87 4 chrX 33799180 33799860 -143174280 + L1ME1 LINE L1 4383 5118 -1011 1211 157 5 0 chrX 33799869 33800066 -143174074 + L1PB1 LINE L1 3 200 -6663 4876 101 36 0 chrX 33800066 33801203 -143172937 + L1PB1 LINE L1 634 2049 -4814 16226 187 7 9 chrX 33802238 33807004 -143167136 + L1PB1 LINE L1 2046 6867 0 33 0 0 0 chrX 33807004 33807037 -143167103 + AT_rich Low_complexity Low_complexity 1 33 0 3679 228 41 24 chrX 33807037 33807783 -143166357 + L1ME1 LINE L1 5112 5844 -305 2306 130 19 35 chrX 33807783 33808153 -143165987 + THE1B LTR MaLR 1 364 0 12913 80 2 7 chrX 33808153 33809740 -143164400 + THE1B-int LTR MaLR 1 1580 0 2356 115 30 33 chrX 33809740 33810105 -143164035 + THE1B LTR MaLR 1 364 0 3679 228 41 24 chrX 33810105 33810358 -143163782 + L1ME1 LINE L1 5843 6130 -19 2116 106 11 0 chrX 33810800 33811116 -143163024 + AluSx SINE Alu 1 319 0 198 0 0 0 chrX 33811196 33811218 -143162922 + (A)n Simple_repeat Simple_repeat 1 22 0 261 208 49 28 chrX 33812450 33812594 -143161546 + (TTAA)n Simple_repeat Simple_repeat 2 148 0 1614 73 20 93 chrX 33813867 33814011 -143160129 + MER30 DNA MER1_type 1 121 -109 2532 68 10 0 chrX 33814011 33814318 -143159822 - AluSg SINE Alu 0 310 1 1614 73 20 93 chrX 33814318 33814421 -143159719 + MER30 DNA MER1_type 121 230 0 870 277 105 11 chrX 33815822 33816270 -143157870 + L1MC/D LINE L1 5308 5797 -2011 981 239 28 0 chrX 33816297 33816510 -143157630 + MER20 DNA MER1_type 1 219 0 210 71 0 0 chrX 33816590 33816618 -143157522 + (GA)n Simple_repeat Simple_repeat 2 29 0 1444 164 4 0 chrX 33816666 33816898 -143157242 + AluJb SINE Alu 72 304 -8 333 273 82 60 chrX 33816955 33817138 -143157002 - L1M4 LINE L1 -2367 3779 3593 230 312 150 16 chrX 33817297 33817544 -143156596 + L1MC4a LINE L1 5689 5968 -1840 206 151 0 38 chrX 33817827 33817842 -143156298 + GA-rich Low_complexity Low_complexity 3 17 -36 2361 92 10 0 chrX 33817842 33818147 -143155993 + AluSx SINE Alu 5 312 0 206 151 0 38 chrX 33818147 33818184 -143155956 + GA-rich Low_complexity Low_complexity 17 53 0 1900 141 34 0 chrX 33818783 33819080 -143155060 + AluJb SINE Alu 1 307 -5 23 0 0 0 chrX 33819384 33819407 -143154733 + AT_rich Low_complexity Low_complexity 1 23 0 328 286 95 16 chrX 33820864 33820990 -143153150 - L2 LINE L2 -1 3271 3136 428 288 159 0 chrX 33821041 33821204 -143152936 + MIR SINE MIR 60 248 -14 180 276 17 35 chrX 33823451 33823509 -143150631 + L2 LINE L2 3204 3260 -12 543 290 26 56 chrX 33825274 33825324 -143148816 - MIR SINE MIR -34 228 178 2297 96 3 0 chrX 33825324 33825616 -143148524 - AluSx SINE Alu -19 293 1 543 290 26 56 chrX 33825616 33825796 -143148344 - MIR SINE MIR -84 178 5 339 298 107 0 chrX 33825808 33825929 -143148211 - MIR3 SINE MIR -62 146 13 580 241 152 6 chrX 33825962 33826120 -143148020 - MER5A DNA MER1_type 0 189 9 318 67 0 0 chrX 33826201 33826246 -143147894 + (CA)n Simple_repeat Simple_repeat 2 46 0 318 277 139 15 chrX 33826268 33826405 -143147735 - MIR3 SINE MIR -36 172 19 236 216 34 57 chrX 33826878 33826966 -143147174 - MLT1J1 LTR MaLR -135 311 226 1600 186 118 17 chrX 33827567 33827922 -143146218 + MSTD LTR MaLR 6 396 0 1226 175 0 5 chrX 33827924 33828147 -143145993 + MSTD-int LTR MaLR 2 223 -1512 233 158 0 0 chrX 33828153 33828191 -143145949 - MSTA LTR MaLR -2 426 389 2044 138 0 10 chrX 33878718 33879016 -143095124 - AluJb SINE Alu -17 295 1 272 290 40 30 chrX 33879020 33879120 -143095020 + MIR SINE MIR 162 262 0 424 129 24 59 chrX 33879188 33879273 -143094867 + L1MC/D LINE L1 5710 5791 -542 1463 246 104 0 chrX 33879342 33879737 -143094403 + MLT1J2 LTR MaLR 7 442 -8 2032 148 0 7 chrX 33879892 33880195 -143093945 + AluJo SINE Alu 1 301 -11 1293 265 50 83 chrX 33880385 33881313 -143092827 - L1MC4 LINE L1 -1 8041 7145 314 287 113 22 chrX 33881742 33882062 -143092078 - L1MC4a LINE L1 -158 5963 5612 2399 60 0 11 chrX 33882068 33882379 -143091761 + AluY SINE Alu 1 308 0 518 264 139 10 chrX 33882574 33882775 -143091365 - MIR SINE MIR -6 256 30 321 186 0 0 chrX 33883669 33883739 -143090401 + GA-rich Low_complexity Low_complexity 1 70 0 2242 99 20 0 chrX 33883915 33884208 -143089932 + AluSg1 SINE Alu 1 299 -10 32 0 0 0 chrX 33884358 33884390 -143089750 + AT_rich Low_complexity Low_complexity 1 32 0 387 143 78 0 chrX 33884745 33884822 -143089318 + L1MA9 LINE L1 6196 6278 -34 216 135 0 0 chrX 33887309 33887346 -143086794 + (CAG)n Simple_repeat Simple_repeat 1 37 0 36 40 0 0 chrX 33887516 33887566 -143086574 + GC_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chrX 33887614 33887650 -143086490 + GC_rich Low_complexity Low_complexity 1 36 0 1064 235 140 60 chrX 33888998 33889233 -143084907 + MLT1G1 LTR MaLR 1 216 -379 2221 106 0 0 chrX 33889233 33889515 -143084625 + AluSx SINE Alu 1 282 -30 192 97 0 0 chrX 33889518 33889549 -143084591 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1064 235 140 60 chrX 33889549 33889858 -143084282 + MLT1G1 LTR MaLR 217 593 -2 299 313 42 42 chrX 33889994 33890186 -143083954 + L1ME1 LINE L1 329 520 -5876 1756 176 0 17 chrX 33890610 33890905 -143083235 + AluJo SINE Alu 1 290 -22 2714 212 70 34 chrX 33891117 33891586 -143082554 + L1ME1 LINE L1 748 1198 -5208 2261 112 3 0 chrX 33891586 33891882 -143082258 + AluSg SINE Alu 1 297 -13 2714 212 70 34 chrX 33891882 33892445 -143081695 + L1ME1 LINE L1 1198 1770 -4636 5601 217 29 68 chrX 33892498 33893295 -143080845 + L1ME1 LINE L1 3935 4761 -1665 2087 120 17 0 chrX 33893295 33893587 -143080553 - AluSx SINE Alu -15 297 1 5601 217 29 68 chrX 33893587 33894926 -143079214 + L1ME1 LINE L1 4761 5939 -487 2299 117 0 0 chrX 33894926 33895226 -143078914 - AluSx SINE Alu -12 300 1 5601 217 29 68 chrX 33895226 33895690 -143078450 + L1ME1 LINE L1 5939 6420 -6 2225 116 3 0 chrX 33895906 33896209 -143077931 + AluSx SINE Alu 1 304 -8 700 227 92 26 chrX 33896278 33896550 -143077590 + LTR33A LTR ERVL 289 522 -1 585 283 57 28 chrX 33896697 33896909 -143077231 + MLT1I LTR MaLR 1 218 -191 242 327 77 18 chrX 33897056 33897224 -143076916 + L2 LINE L2 2871 3048 -224 1946 107 14 35 chrX 33897279 33897568 -143076572 - AluSx SINE Alu -21 291 9 291 182 18 0 chrX 33897758 33897813 -143076327 + L2 LINE L2 3217 3272 0 24 53 0 0 chrX 33897822 33897860 -143076280 + AT_rich Low_complexity Low_complexity 1 38 0 47 86 0 0 chrX 33898180 33898297 -143075843 + AT_rich Low_complexity Low_complexity 1 117 0 390 225 0 0 chrX 33899518 33899589 -143074551 - MLT1J LTR MaLR -331 180 110 1758 169 136 7 chrX 33899845 33900186 -143073954 + L1MB5 LINE L1 5803 6174 0 922 261 60 108 chrX 33900321 33900394 -143073746 + MLT1J LTR MaLR 1 76 -435 2487 87 3 0 chrX 33900394 33900705 -143073435 + AluSx SINE Alu 1 312 0 922 261 60 108 chrX 33900705 33901168 -143072972 + MLT1J LTR MaLR 76 511 0 5834 134 6 7 chrX 33901324 33902425 -143071715 + L1MB1 LINE L1 5067 6168 0 1644 190 74 36 chrX 33902631 33902779 -143071361 - MLT1B LTR MaLR -11 379 238 2388 99 0 0 chrX 33902779 33903073 -143071067 - AluSx SINE Alu -18 294 1 1644 190 74 36 chrX 33903073 33903288 -143070852 - MLT1B LTR MaLR -152 238 2 1467 207 81 83 chrX 33903535 33903993 -143070147 - MLT1H LTR MaLR -2 547 91 291 122 0 0 chrX 33903998 33904047 -143070093 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 1105 83 0 18 chrX 33904048 33904217 -143069923 + (TTTC)n Simple_repeat Simple_repeat 4 169 0 1783 101 10 95 chrX 33904217 33904523 -143069617 - AluSx SINE Alu -32 280 1 228 133 0 0 chrX 33904523 33904553 -143069587 - MLT1H LTR MaLR -446 103 74 3422 129 36 91 chrX 33904754 33904866 -143069274 + MER41B LTR ERV1 1 118 -517 2310 95 7 0 chrX 33904866 33905162 -143068978 + AluSq SINE Alu 1 298 -15 3422 129 36 91 chrX 33905162 33905624 -143068516 + MER41B LTR ERV1 118 535 -100 1970 124 7 3 chrX 33905624 33905906 -143068234 - AluSq SINE Alu 0 313 31 3422 129 36 91 chrX 33905906 33906002 -143068138 + MER41B LTR ERV1 535 635 0 582 259 84 63 chrX 33906275 33906627 -143067513 + L2 LINE L2 2922 3284 -29 3330 68 35 11 chrX 33906627 33907081 -143067059 + MER4C LTR ERV1 1 465 0 582 259 84 63 chrX 33907081 33907107 -143067033 + L2 LINE L2 3284 3308 -5 1712 155 7 18 chrX 33907203 33907481 -143066659 + AluJb SINE Alu 1 275 -37 829 254 35 5 chrX 33907555 33907752 -143066388 + MIR SINE MIR 5 207 -55 616 24 0 24 chrX 33907904 33907988 -143066152 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 2112 127 0 0 chrX 33907988 33908271 -143065869 - AluSx SINE Alu -29 283 1 278 203 0 17 chrX 33908435 33908494 -143065646 - MLT1K LTR MaLR 0 588 531 876 268 100 48 chrX 33908538 33908959 -143065181 + LTR16A LTR ERVL 8 450 0 2444 168 28 76 chrX 33908967 33909544 -143064596 - MLT2B3 LTR ERVL -4 550 2 701 270 50 67 chrX 33909571 33909930 -143064210 - MLT1K LTR MaLR -109 479 127 1571 194 17 7 chrX 33910288 33910576 -143063564 + AluJb SINE Alu 1 291 -21 1720 144 18 89 chrX 33911067 33911394 -143062746 - AluJb SINE Alu -8 304 1 2437 87 3 0 chrX 33911744 33912043 -143062097 + AluSp SINE Alu 3 302 -11 32 0 0 0 chrX 33912275 33912307 -143061833 + AT_rich Low_complexity Low_complexity 1 32 0 1063 125 51 0 chrX 33912308 33912484 -143061656 - L1PB4 LINE L1 -12 6144 5960 909 150 0 92 chrX 33912896 33913069 -143061071 + FRAM SINE Alu 1 157 -9 1643 121 152 0 chrX 33913093 33913350 -143060790 + AluJb SINE Alu 1 296 -16 1458 159 12 0 chrX 33913471 33913723 -143060417 + L1MA8 LINE L1 6033 6287 -4 3625 98 74 53 chrX 33913832 33914076 -143060064 + L1MC1 LINE L1 5663 5900 -433 2319 97 3 0 chrX 33914076 33914376 -143059764 + AluSp SINE Alu 1 301 -12 3625 98 74 53 chrX 33914376 33914751 -143059389 + L1MC1 LINE L1 5900 6295 -38 849 119 0 0 chrX 33914751 33914869 -143059271 + FLAM_C SINE Alu 1 118 -15 23 0 0 0 chrX 33914871 33914894 -143059246 + AT_rich Low_complexity Low_complexity 1 23 0 583 159 19 234 chrX 33914905 33915064 -143059076 - L1M4 LINE L1 -2086 4060 3869 2209 100 0 4 chrX 33915064 33915345 -143058795 - AluSg SINE Alu -30 280 1 583 159 19 234 chrX 33915345 33915468 -143058672 - L1M4 LINE L1 -2277 3869 3868 2176 118 10 0 chrX 33915468 33915773 -143058367 - AluSx SINE Alu -4 308 1 583 159 19 234 chrX 33915773 33915848 -143058292 - L1M4 LINE L1 -2278 3868 3779 1042 220 57 29 chrX 33915873 33916223 -143057917 + L1M4 LINE L1 4120 4479 -1667 1298 273 47 41 chrX 33916412 33916753 -143057387 - MLT1H LTR MaLR -13 536 189 2213 98 19 7 chrX 33916753 33917060 -143057080 + AluSx SINE Alu 1 311 -1 1298 273 47 41 chrX 33917060 33917249 -143056891 - MLT1H LTR MaLR -360 189 3 2319 109 6 3 chrX 33917732 33918044 -143056096 - AluSq SINE Alu 0 313 1 1934 146 0 10 chrX 33918166 33918468 -143055672 + AluJb SINE Alu 1 299 -13 1368 301 39 5 chrX 33918814 33919226 -143054914 - LTR16A LTR ERVL 0 450 25 2155 125 0 3 chrX 33919322 33919617 -143054523 - AluSx SINE Alu -18 294 1 2177 89 10 26 chrX 33919825 33920127 -143054013 + AluSx SINE Alu 1 297 -15 2463 242 39 11 chrX 33920128 33920686 -143053454 + MLT1G LTR MaLR 17 590 0 248 258 155 0 chrX 33921908 33922005 -143052135 - MIR SINE MIR -99 163 52 1847 83 0 0 chrX 33922468 33922698 -143051442 - AluSg/x SINE Alu -4 306 77 1953 121 5 113 chrX 33922708 33922749 -143051391 - L1MB2 LINE L1 0 6171 6127 1545 157 34 44 chrX 33922749 33922942 -143051198 - AluJb SINE Alu -16 296 106 2135 104 0 4 chrX 33922942 33923221 -143050919 - AluSg SINE Alu -27 283 6 1545 157 34 44 chrX 33923221 33923321 -143050819 - AluJb SINE Alu -206 106 6 1953 121 5 113 chrX 33923321 33923443 -143050697 - L1MB2 LINE L1 -44 6127 5993 2422 101 0 0 chrX 33923443 33923749 -143050391 + AluSq SINE Alu 1 306 -7 1953 121 5 113 chrX 33923749 33924007 -143050133 - L1MB2 LINE L1 -178 5993 5836 2430 106 0 0 chrX 33924007 33924319 -143049821 - AluSq SINE Alu -1 312 1 1953 121 5 113 chrX 33924319 33924421 -143049719 - L1MB2 LINE L1 -335 5836 5725 2124 100 4 0 chrX 33924652 33924953 -143049187 - AluSx SINE Alu 0 302 1 2152 109 0 7 chrX 33925609 33925894 -143048246 - AluSx SINE Alu -29 283 1 37 23 0 0 chrX 33926297 33926341 -143047799 + AT_rich Low_complexity Low_complexity 1 44 0 2253 120 0 0 chrX 33926341 33926640 -143047500 + AluSx SINE Alu 1 299 -13 750 160 0 17 chrX 33926644 33926763 -143047377 - FLAM_C SINE Alu -16 117 1 2061 123 0 3 chrX 33926788 33927112 -143047028 - AluSx SINE Alu 0 323 1 2041 146 0 3 chrX 33927158 33927466 -143046674 + AluJo SINE Alu 1 307 -5 1922 149 3 27 chrX 33927626 33927922 -143046218 + AluSx SINE Alu 7 295 -17 2091 123 0 3 chrX 33927925 33928261 -143045879 + AluSp SINE Alu 1 335 0 208 186 198 35 chrX 33928531 33928617 -143045523 - MIR SINE MIR -18 244 145 1694 146 64 4 chrX 33928633 33928913 -143045227 - AluJo SINE Alu -15 297 1 315 272 160 0 chrX 33928997 33929122 -143045018 - MIR SINE MIR -112 150 6 2291 106 0 0 chrX 33929253 33929555 -143044585 + AluSp SINE Alu 1 302 -11 390 297 26 73 chrX 33929592 33929784 -143044356 + MLT1L LTR MaLR 1 183 -432 306 215 0 35 chrX 33929931 33930075 -143044065 + CT-rich Low_complexity Low_complexity 2 140 0 318 50 0 0 chrX 33930077 33930117 -143044023 + (CA)n Simple_repeat Simple_repeat 1 40 0 584 268 28 34 chrX 33930502 33930681 -143043459 - MER97a DNA MER1_type? -716 178 1 339 298 101 27 chrX 33930723 33930781 -143043359 - L1M4 LINE L1 -1314 4832 4780 592 200 200 15 chrX 33930781 33930916 -143043224 - FRAM SINE Alu -6 160 1 339 298 101 27 chrX 33930916 33931045 -143043095 - L1M4 LINE L1 -1366 4780 4631 32 0 0 0 chrX 33931173 33931205 -143042935 + AT_rich Low_complexity Low_complexity 1 32 0 2169 99 3 3 chrX 33931212 33931530 -143042610 - AluSg SINE Alu 0 318 1 1622 193 21 56 chrX 33931555 33931933 -143042207 + MLT1A1 LTR MaLR 1 365 0 2303 88 0 0 chrX 33931976 33932281 -143041859 - AluSq SINE Alu 0 305 1 592 274 116 9 chrX 33932391 33932606 -143041534 - L1MC4a LINE L1 -1834 5974 5737 496 185 0 67 chrX 33932624 33932743 -143041397 + L1ME1 LINE L1 5896 6006 -160 2166 96 0 46 chrX 33932766 33933068 -143041072 + AluSx SINE Alu 1 288 -24 284 258 0 0 chrX 33933069 33933135 -143041005 + L1MB7 LINE L1 6106 6171 -13 471 249 0 55 chrX 33933307 33933472 -143040668 + L2 LINE L2 3156 3311 -2 421 280 6 12 chrX 33933470 33933599 -143040541 - MER5A DNA MER1_type -41 139 8 * 979 216 104 49 chrX 33933687 33934177 -143039963 + MLT1H LTR MaLR 1 555 0 209 319 14 0 chrX 33934205 33934274 -143039866 + L2 LINE L2 2782 2851 -463 538 330 0 0 chrX 33934373 33934549 -143039591 + MIR SINE MIR 79 254 -8 335 213 113 81 chrX 33934562 33934722 -143039418 + L2 LINE L2 3149 3313 0 2362 98 0 0 chrX 33934932 33935239 -143038901 - AluSx SINE Alu -5 307 1 2235 108 7 16 chrX 33935248 33935555 -143038585 - AluSx SINE Alu -8 304 1 1729 176 3 19 chrX 33936214 33936526 -143037614 - AluJb SINE Alu -5 307 1 2128 137 0 0 chrX 33936547 33936847 -143037293 - AluSx SINE Alu -12 300 1 369 0 0 0 chrX 33936851 33936892 -143037248 + (TTG)n Simple_repeat Simple_repeat 2 42 0 559 238 14 7 chrX 33936920 33937067 -143037073 + L2 LINE L2 1793 1940 -1374 738 210 17 6 chrX 33937134 33937315 -143036825 - L1MD3 LINE L1 -1 7994 7812 2229 99 16 3 chrX 33937318 33937622 -143036518 + AluSq SINE Alu 1 308 -5 272 155 0 17 chrX 33937622 33937680 -143036460 + GA-rich Low_complexity Low_complexity 1 57 0 1491 187 102 67 chrX 33937784 33938186 -143035954 - L1MD2 LINE L1 -250 6109 5694 2973 175 35 10 chrX 33938187 33938876 -143035264 - L1ME LINE L1 -4767 1773 977 2149 115 41 44 chrX 33938876 33939241 -143034899 - THE1B LTR MaLR 0 364 1 2973 175 35 10 chrX 33939241 33939314 -143034826 - L1ME LINE L1 -5563 977 907 343 316 83 18 chrX 33939346 33939514 -143034626 - L1ME LINE L1 -5573 957 779 984 282 24 30 chrX 33939525 33939858 -143034282 - L1ME LINE L1 -6128 412 82 2056 138 0 0 chrX 33939863 33940161 -143033979 - AluJb SINE Alu -3 309 12 2031 290 98 6 chrX 33940280 33941202 -143032938 + L2 LINE L2 2127 3133 -180 676 268 170 53 chrX 33941202 33941309 -143032831 - MLT1H1 LTR MaLR 0 555 462 2320 94 3 0 chrX 33941309 33941607 -143032533 + AluSx SINE Alu 1 299 -13 676 268 170 53 chrX 33941607 33942023 -143032117 - MLT1H1 LTR MaLR -93 462 13 1901 158 0 0 chrX 33942069 33942386 -143031754 - AluJb SINE Alu 0 317 1 383 231 58 10 chrX 33942407 33942511 -143031629 + L2 LINE L2 3201 3309 -4 261 0 0 0 chrX 33942543 33942572 -143031568 + (CA)n Simple_repeat Simple_repeat 2 30 0 1666 160 32 21 chrX 33942671 33942953 -143031187 + AluJo SINE Alu 1 285 -27 2238 100 0 10 chrX 33943657 33943957 -143030183 + AluSq SINE Alu 1 297 -16 2277 115 0 10 chrX 33944788 33945101 -143029039 + AluSx SINE Alu 1 310 -2 2006 165 23 34 chrX 33945658 33946046 -143028094 - MLT1B LTR MaLR -3 387 4 1817 184 3 0 chrX 33946098 33946386 -143027754 - AluJo SINE Alu -23 289 1 668 250 121 0 chrX 33947041 33947265 -143026875 + MIR SINE MIR 12 262 0 22733 130 45 11 chrX 33947287 33949036 -143025104 + L1M1 LINE L1 1 1689 -5876 194 0 39 0 chrX 33949036 33949062 -143025078 + (GA)n Simple_repeat Simple_repeat 2 28 0 22733 130 45 11 chrX 33949062 33951065 -143023075 + L1M1 LINE L1 1689 3883 -3682 348 97 129 0 chrX 33951064 33951126 -143023014 + L1MA2 LINE L1 6046 6115 -189 * 2480 83 0 0 chrX 33951127 33951427 -143022713 - AluSq SINE Alu -13 300 1 363 189 27 0 chrX 33951428 33951502 -143022638 - L1ME LINE L1 -506 5615 5540 2172 181 136 51 chrX 33951849 33952158 -143021982 - REP3 LTR ERV 0 562 192 2078 133 0 10 chrX 33952158 33952492 -143021648 + AluSx SINE Alu 1 312 0 2172 181 136 51 chrX 33952492 33952690 -143021450 - REP3 LTR ERV -370 192 12 2021 129 0 14 chrX 33952734 33953029 -143021111 - AluJb SINE Alu -21 291 1 2211 103 3 28 chrX 33953077 33953300 -143020840 - AluSx SINE Alu 0 352 125 207 0 0 0 chrX 33953300 33953323 -143020817 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2050 131 3 0 chrX 33953323 33953605 -143020535 - AluSx SINE Alu -29 283 1 2211 103 3 28 chrX 33953605 33953740 -143020400 - AluSx SINE Alu -225 127 1 4787 148 8 14 chrX 33953747 33954443 -143019697 - L1 LINE L1 -1162 4984 4292 2015 149 0 13 chrX 33954443 33954752 -143019388 - AluJb SINE Alu -7 305 1 4787 148 8 14 chrX 33954752 33954902 -143019238 - L1 LINE L1 -1854 4292 4143 379 137 0 0 chrX 33955047 33955098 -143019042 - MER66A LTR ERV1 -142 336 286 430 261 29 71 chrX 33955344 33955526 -143018614 + MER69A DNA AcHobo 4 177 0 2204 81 7 21 chrX 33955604 33955889 -143018251 + AluSp SINE Alu 1 281 -32 1161 113 0 0 chrX 33955890 33956067 -143018073 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 2272 107 0 0 chrX 33956553 33956898 -143017242 + AluSx SINE Alu 1 345 0 2260 101 0 16 chrX 33957067 33957375 -143016765 + AluSx SINE Alu 1 303 -9 374 132 0 15 chrX 33957379 33957447 -143016693 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 2160 109 3 3 chrX 33957501 33957795 -143016345 - AluSc SINE Alu -15 294 1 2056 128 0 7 chrX 33957829 33958126 -143016014 + AluSx SINE Alu 1 295 -17 2515 84 0 0 chrX 33958126 33958434 -143015706 + AluSc SINE Alu 1 309 0 545 107 0 24 chrX 33959127 33959211 -143014929 + AluJo/FLAM SINE Alu 52 133 -179 * 699 188 14 29 chrX 33959207 33959345 -143014795 + AluJo SINE Alu 96 231 -81 217 150 0 25 chrX 33959361 33959401 -143014739 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 1671 149 23 50 chrX 33959427 33959570 -143014570 + AluJo SINE Alu 1 146 -166 2121 122 20 0 chrX 33959570 33959864 -143014276 + AluJb SINE Alu 1 300 -12 1671 149 23 50 chrX 33959864 33960022 -143014118 + AluJo SINE Alu 146 294 -18 957 207 67 74 chrX 33960128 33960592 -143013548 + MLT1H1 LTR MaLR 9 595 0 2130 132 0 3 chrX 33960745 33961048 -143013092 - AluSx SINE Alu -10 302 1 248 297 63 27 chrX 33962027 33962138 -143012002 + MIR SINE MIR 17 131 -77 24 32 0 0 chrX 33962210 33962241 -143011899 + AT_rich Low_complexity Low_complexity 1 31 0 2478 92 0 0 chrX 33962456 33962760 -143011380 + AluSx SINE Alu 1 304 -8 231 250 83 14 chrX 33963203 33963275 -143010865 - L2 LINE L2 0 3272 3196 2503 63 0 0 chrX 33963308 33963607 -143010533 - AluSg SINE Alu -11 299 1 2341 63 0 50 chrX 33963620 33963937 -143010203 - AluSc SINE Alu -8 301 1 2433 66 7 3 chrX 33963965 33964269 -143009871 + AluSq SINE Alu 1 305 -8 1633 118 17 88 chrX 33964400 33964696 -143009444 + AluJo SINE Alu 5 279 -33 593 0 28 0 chrX 33964696 33964768 -143009372 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 24 32 0 0 chrX 33967601 33967632 -143006508 + AT_rich Low_complexity Low_complexity 1 31 0 2014 156 0 0 chrX 33967636 33967944 -143006196 + AluJb SINE Alu 1 308 -4 2368 81 0 16 chrX 33968338 33968646 -143005494 - AluSx SINE Alu -9 303 1 1173 226 215 48 chrX 33969687 33970164 -143003976 - MLT1G1 LTR MaLR 0 595 1 421 95 0 0 chrX 33970212 33970275 -143003865 - L1MB8 LINE L1 -6 6172 6110 2057 119 14 7 chrX 33970296 33970581 -143003559 - AluSx SINE Alu -25 287 1 338 116 14 14 chrX 33970582 33970651 -143003489 - L1MA4 LINE L1 -248 6052 5984 1261 107 0 19 chrX 33970652 33970857 -143003283 + L1MA4 LINE L1 6094 6294 -6 3185 143 73 19 chrX 33970881 33971372 -143002768 - L1MB7 LINE L1 -57 6127 5597 2525 66 0 0 chrX 33971372 33971673 -143002467 - AluY SINE Alu -10 301 1 3185 143 73 19 chrX 33971673 33971767 -143002373 - L1MB7 LINE L1 -587 5597 5510 987 137 0 0 chrX 33972201 33972340 -143001800 - AluSq/x SINE Alu -174 139 1 21 57 0 0 chrX 33972468 33972503 -143001637 + AT_rich Low_complexity Low_complexity 1 35 0 7027 34 1 4 chrX 33972551 33973388 -143000752 - L1PA5 LINE L1 -6 6148 5316 4559 150 37 53 chrX 33973799 33974137 -143000003 - L1ME1 LINE L1 0 6166 5824 1869 156 3 10 chrX 33974137 33974432 -142999708 - AluJb SINE Alu -19 293 1 4559 150 37 53 chrX 33974432 33974674 -142999466 - L1ME1 LINE L1 -342 5824 5580 1919 142 6 22 chrX 33974674 33974990 -142999150 + AluJo SINE Alu 2 312 0 4559 150 37 53 chrX 33974990 33975098 -142999042 - L1ME1 LINE L1 -586 5580 5472 1683 155 7 27 chrX 33975098 33975395 -142998745 - AluJo SINE Alu -21 291 1 4559 150 37 53 chrX 33975395 33975800 -142998340 - L1ME1 LINE L1 -694 5472 5089 594 91 0 0 chrX 33975800 33975877 -142998263 - AluSc SINE Alu -14 295 219 329 195 0 13 chrX 33975878 33975955 -142998185 + (TA)n Simple_repeat Simple_repeat 1 76 0 286 293 0 14 chrX 33976023 33976170 -142997970 + (TA)n Simple_repeat Simple_repeat 2 146 0 245 214 0 0 chrX 33976170 33976226 -142997914 + L1MC4 LINE L1 6648 6703 -1339 * 265 194 0 42 chrX 33976195 33976267 -142997873 + L1MCa LINE L1 1996 2064 -4362 239 133 0 0 chrX 33976287 33976332 -142997808 - LTR66 LTR ERVL -172 438 394 615 219 45 19 chrX 33976333 33976488 -142997652 + MIR SINE MIR 83 241 -21 2432 81 3 0 chrX 33976740 33977050 -142997090 - AluSq SINE Alu -2 311 1 2053 136 0 3 chrX 33977113 33977408 -142996732 + AluJb SINE Alu 1 294 -18 1205 122 0 33 chrX 33977560 33977741 -142996399 - AluJb SINE Alu -18 294 120 456 256 33 25 chrX 33977792 33977913 -142996227 - FLAM_A SINE Alu -11 122 1 759 176 84 16 chrX 33978153 33978338 -142995802 + MLT1B LTR MaLR 1 188 -186 1167 122 17 6 chrX 33978413 33978585 -142995555 - MLT1A1 LTR MaLR -14 351 178 249 254 51 0 chrX 33979225 33979284 -142994856 + L2 LINE L2 3251 3312 -1 2266 105 3 0 chrX 33979721 33980016 -142994124 + AluSq SINE Alu 1 296 -17 2215 96 3 13 chrX 33980016 33980151 -142993989 + AluY SINE Alu 1 136 -175 1749 102 117 11 chrX 33980151 33980425 -142993715 + AluSc SINE Alu 1 303 -6 2215 96 3 13 chrX 33980425 33980591 -142993549 + AluY SINE Alu 136 299 -12 503 154 0 10 chrX 33980591 33980695 -142993445 + GA-rich Low_complexity Low_complexity 1 103 0 2155 126 0 0 chrX 33980940 33981249 -142992891 - AluSx SINE Alu -3 309 1 220 283 17 0 chrX 33981746 33981806 -142992334 + L2 LINE L2 3250 3310 -3 183 200 0 0 chrX 33982823 33982853 -142991287 - L2 LINE L2 -23 3290 3261 241 233 70 35 chrX 33982856 33982942 -142991198 + HsTC2 DNA Tc2 2 90 -1808 181 255 0 21 chrX 33982978 33983025 -142991115 - L2 LINE L2 -84 3229 3184 2183 109 0 10 chrX 33983138 33983432 -142990708 - AluSc SINE Alu -18 291 1 2329 88 3 0 chrX 33983839 33984133 -142990007 - AluSx SINE Alu -17 295 1 1080 226 33 0 chrX 33984783 33985026 -142989114 - MIR SINE MIR 0 262 12 2337 83 0 0 chrX 33985646 33985947 -142988193 + AluSg1 SINE Alu 1 301 -8 1832 150 3 11 chrX 33986841 33987127 -142987013 - AluJo SINE Alu -16 296 13 854 228 89 0 chrX 33987302 33987504 -142986636 + MIR SINE MIR 32 251 -11 1953 155 3 22 chrX 33987567 33987884 -142986256 + AluJo SINE Alu 1 311 -1 311 186 48 131 chrX 33987899 33988044 -142986096 - L1ME4a LINE L1 -246 5875 5743 210 342 132 9 chrX 33989660 33989774 -142984366 + L3 LINE CR1 1235 1362 -215 2354 221 125 84 chrX 33989819 33989929 -142984211 + L1MC4 LINE L1 6903 7007 -1035 1724 188 14 0 chrX 33989929 33990222 -142983918 + AluJo SINE Alu 1 297 -15 2354 221 125 84 chrX 33990222 33990458 -142983682 + L1MC4 LINE L1 7007 7232 -810 2192 98 11 0 chrX 33990458 33990744 -142983396 + AluSg SINE Alu 1 289 -21 2490 43 0 0 chrX 33990745 33991058 -142983082 + AluY SINE Alu 1 313 0 2354 221 125 84 chrX 33991058 33991802 -142982338 + L1MC4 LINE L1 7231 8042 0 1229 157 60 51 chrX 33991938 33992155 -142981985 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chrX 33992266 33992289 -142981851 + AT_rich Low_complexity Low_complexity 1 23 0 1941 116 36 4 chrX 33992396 33992672 -142981468 + AluJb SINE Alu 1 285 -27 788 183 0 0 chrX 33992710 33992841 -142981299 - AluJb SINE Alu -9 303 173 1426 169 0 0 chrX 33992858 33993077 -142981063 - AluJo SINE Alu -93 219 1 193 350 10 21 chrX 33993083 33993180 -142980960 + MER5A DNA MER1_type 68 163 -26 535 176 25 42 chrX 33993230 33993349 -142980791 - L2 LINE L2 -466 2848 2732 5844 189 148 75 chrX 33993349 33993883 -142980257 - L1MC3 LINE L1 0 7785 7292 414 264 0 0 chrX 33993883 33993974 -142980166 - MLT1F1 LTR MaLR -442 125 35 5844 189 148 75 chrX 33993974 33994014 -142980126 - L1MC3 LINE L1 -493 7292 7256 2369 75 7 3 chrX 33994014 33994306 -142979834 + AluSc SINE Alu 1 293 -16 5844 189 148 75 chrX 33994306 33995459 -142978681 - L1MC3 LINE L1 -529 7256 5810 2432 84 0 0 chrX 33995459 33995767 -142978373 - AluSx SINE Alu -4 308 1 5844 189 148 75 chrX 33995767 33995905 -142978235 - L1MC3 LINE L1 -1975 5810 5684 448 93 81 0 chrX 33995905 33995991 -142978149 - L1MB3 LINE L1 -1 6182 6090 2829 133 27 11 chrX 33996000 33996552 -142977588 - L1MA4 LINE L1 -272 6030 5428 326 150 0 0 chrX 33996549 33996609 -142977531 - L1MD3 LINE L1 0 7995 7936 * 1331 123 0 11 chrX 33996609 33996796 -142977344 + AluJo SINE Alu 1 185 -127 2310 89 3 7 chrX 33996869 33997173 -142976967 + AluSx SINE Alu 1 303 -9 1813 151 0 30 chrX 33997180 33997484 -142976656 + AluJb SINE Alu 1 295 -17 770 174 0 8 chrX 33997501 33997622 -142976518 + FLAM_C SINE Alu 6 125 -18 2190 66 63 3 chrX 33997661 33997948 -142976192 - AluSp SINE Alu -9 304 1 2539 60 3 0 chrX 33997973 33998273 -142975867 - AluSp SINE Alu -10 303 3 1148 160 55 5 chrX 33998275 33998475 -142975665 + MER82 DNA MER2_type 145 354 -299 1750 166 10 14 chrX 33998479 33998775 -142975365 - AluJo SINE Alu -17 295 1 874 132 0 0 chrX 33998798 33998919 -142975221 - FLAM_C SINE Alu -22 121 1 1590 195 24 10 chrX 33998921 33999219 -142974921 + MER82 DNA MER2_type 351 652 -1 460 176 11 0 chrX 33999228 33999319 -142974821 - L1M4 LINE L1 -3128 3018 2927 366 188 0 16 chrX 33999323 33999387 -142974753 + MER58A DNA MER1_type 30 92 -15 2397 73 37 0 chrX 33999388 33999688 -142974452 - AluSq SINE Alu -2 311 1 425 154 0 0 chrX 33999711 33999776 -142974364 + MER58A DNA MER1_type 160 224 0 2041 206 25 5 chrX 33999776 34000208 -142973932 - L1M4 LINE L1 -3206 2940 2500 1418 124 0 25 chrX 34050208 34050410 -142923730 - AluJb SINE Alu -115 197 1 1129 254 51 19 chrX 34050412 34050727 -142923413 - L1ME LINE L1 -402 5768 5444 1446 183 28 53 chrX 34050747 34051069 -142923071 - L1ME2 LINE L1 -9 6155 5842 1129 206 71 4 chrX 34051066 34051318 -142922822 + L1MD2 LINE L1 5686 5954 -405 * 2894 235 28 3 chrX 34051294 34051929 -142922211 - L1MB7 LINE L1 0 6578 5928 456 206 85 28 chrX 34051929 34052217 -142921923 - L1MB7 LINE L1 -3427 3113 1630 895 84 0 0 chrX 34052238 34052357 -142921783 - AluSx SINE Alu 0 310 192 328 114 0 0 chrX 34052358 34052402 -142921738 - AluSx SINE Alu -162 141 98 642 168 9 0 chrX 34052402 34052515 -142921625 + AluSc SINE Alu 132 245 -64 1719 86 5 0 chrX 34052517 34052737 -142921403 + AluSq SINE Alu 85 305 -8 451 263 0 0 chrX 34053666 34053765 -142920375 + MER5B DNA MER1_type 1 99 -79 3214 204 73 32 chrX 34053765 34054005 -142920135 - L1M4 LINE L1 -2929 3217 2988 2169 94 28 0 chrX 34054005 34054291 -142919849 - AluSq SINE Alu -19 294 1 3214 204 73 32 chrX 34054291 34054405 -142919735 - L1M4 LINE L1 -3158 2988 2880 2364 104 0 0 chrX 34054405 34054712 -142919428 - AluSx SINE Alu -5 307 1 3214 204 73 32 chrX 34054712 34055262 -142918878 - L1M4 LINE L1 -3266 2880 2275 1075 172 0 0 chrX 34055262 34055425 -142918715 - FRAM SINE Alu -20 156 1 226 188 62 0 chrX 34055515 34055563 -142918577 + L1MC4a LINE L1 7753 7803 -5 24 67 0 0 chrX 34055573 34055618 -142918522 + AT_rich Low_complexity Low_complexity 1 45 0 414 289 90 6 chrX 34056816 34056982 -142917158 - L3 LINE CR1 -63 1514 1335 307 228 251 39 chrX 34057051 34057310 -142916830 + L2 LINE L2 1713 2026 -1288 266 192 51 26 chrX 34057448 34057526 -142916614 + GA-rich Low_complexity Low_complexity 4 83 0 630 361 55 27 chrX 34057613 34058125 -142916015 + L2 LINE L2 2378 2903 -411 1150 168 59 5 chrX 34058926 34059129 -142915011 + MER58 DNA MER1_type 3 216 -125 2211 199 169 4 chrX 34059130 34059628 -142914512 - MLT1G LTR MaLR 0 590 11 1679 209 67 24 chrX 34059956 34060372 -142913768 + MLT1H LTR MaLR 114 547 -2 2049 111 0 0 chrX 34060726 34061006 -142913134 + AluSg SINE Alu 18 297 -13 522 127 13 0 chrX 34061016 34061095 -142913045 - MER116 DNA Mariner 0 80 1 3174 183 30 2 chrX 34063056 34063598 -142910542 - MER68 LTR ERV1 0 562 6 568 267 83 92 chrX 34064007 34064452 -142909688 + L2 LINE L2 2832 3272 0 410 289 132 26 chrX 34064583 34064773 -142909367 + MLT1K LTR MaLR 369 578 -10 314 326 52 15 chrX 34065115 34065250 -142908890 + L3 LINE CR1 253 392 -1185 445 290 351 15 chrX 34065353 34065811 -142908329 + L3 LINE CR1 583 1194 -383 469 323 101 4 chrX 34065820 34066068 -142908072 + L1ME3A LINE L1 5555 5826 -344 1244 265 86 8 chrX 34066079 34066430 -142907710 - MLT1I LTR MaLR -3 406 29 437 0 0 19 chrX 34066586 34066640 -142907500 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1724 157 27 10 chrX 34066731 34067024 -142907116 + AluJb SINE Alu 11 308 -4 291 230 26 18 chrX 34067031 34067144 -142906996 + GA-rich Low_complexity Low_complexity 1 114 0 1180 141 0 11 chrX 34067149 34067333 -142906807 + FRAM SINE Alu 1 176 0 2225 92 3 7 chrX 34067482 34067793 -142906347 + AluSx SINE Alu 1 312 0 371 321 9 19 chrX 34068046 34068152 -142905988 + L3 LINE CR1 1461 1565 -12 2372 116 0 0 chrX 34068991 34069302 -142904838 + AluSx SINE Alu 1 311 -1 239 277 62 54 chrX 34070291 34070421 -142903719 + L1ME LINE L1 328 458 -5938 2206 87 24 0 chrX 34070842 34071130 -142903010 - AluSx SINE Alu -17 295 1 1629 199 65 91 chrX 34071453 34071783 -142902357 + L1ME LINE L1 783 1089 -5320 717 236 0 0 chrX 34071783 34071906 -142902234 + FLAM_A SINE Alu 1 123 -10 1629 199 65 91 chrX 34071906 34072232 -142901908 + L1ME LINE L1 1089 1422 -4987 2179 98 7 3 chrX 34072245 34072541 -142901599 - AluSx SINE Alu -10 302 6 1673 175 0 3 chrX 34072641 34072938 -142901202 + AluY SINE Alu 1 296 -15 784 198 64 12 chrX 34073154 34073326 -142900814 + MER58B DNA MER1_type 1 181 -160 2180 121 3 0 chrX 34073326 34073623 -142900517 - AluSx SINE Alu -14 298 1 228 111 0 0 chrX 34073623 34073659 -142900481 - L1M4 LINE L1 -3175 2971 2936 2208 100 13 0 chrX 34073727 34074026 -142900114 - AluSx SINE Alu -9 303 1 1054 161 0 6 chrX 34074028 34074196 -142899944 + MER58B DNA MER1_type 175 341 0 2220 95 4 0 chrX 34074926 34075210 -142898930 + AluSp SINE Alu 1 284 -29 253 0 0 0 chrX 34075210 34075238 -142898902 + (CAAAA)n Simple_repeat Simple_repeat 2 95 0 2393 71 3 7 chrX 34075249 34075543 -142898597 + AluSx SINE Alu 1 293 -19 1132 164 36 36 chrX 34075995 34076214 -142897926 - MER20 DNA MER1_type 0 219 1 400 246 103 112 chrX 34076681 34076835 -142897305 - L1ME LINE L1 -303 5818 5665 2361 94 0 25 chrX 34076835 34077155 -142896985 - AluSx SINE Alu 0 312 1 400 246 103 112 chrX 34077155 34077224 -142896916 - L1ME LINE L1 -456 5665 5597 973 163 18 98 chrX 34078155 34078205 -142895935 - L1MA10 LINE L1 -29 6305 6253 2122 122 3 0 chrX 34078205 34078491 -142895649 + AluSx SINE Alu 1 287 -25 973 163 18 98 chrX 34078491 34078717 -142895423 - L1MA10 LINE L1 -81 6253 6051 508 211 77 0 chrX 34078769 34078925 -142895215 - LTR16A1 LTR ERVL -4 453 286 257 239 33 54 chrX 34079008 34079100 -142895040 - LTR16A1 LTR ERVL -347 110 21 239 321 52 76 chrX 34079127 34079240 -142894900 - L2 LINE L2 -30 3242 3128 1199 110 110 10 chrX 34079240 34079449 -142894691 + MER30 DNA MER1_type 1 230 0 239 321 52 76 chrX 34079449 34079821 -142894319 - L2 LINE L2 -144 3128 2773 271 295 0 13 chrX 34079908 34079986 -142894154 + MIR SINE MIR 67 143 -119 1861 189 32 12 chrX 34080663 34081001 -142893139 - L1MC/D LINE L1 -564 6489 6140 2502 82 7 0 chrX 34081001 34081307 -142892833 - AluSx SINE Alu -4 308 1 1861 189 32 12 chrX 34081307 34081412 -142892728 - L1MC/D LINE L1 -913 6140 6039 598 179 16 8 chrX 34081417 34081540 -142892600 - L1ME LINE L1 -748 5611 5488 255 208 78 0 chrX 34081553 34081630 -142892510 - L1MC/D LINE L1 -906 6051 5969 528 127 0 0 chrX 34081635 34081714 -142892426 - LTR23 LTR ERV1 -34 403 325 716 188 64 15 chrX 34081719 34081921 -142892219 - L1MC/D LINE L1 -974 5983 5772 1880 207 63 22 chrX 34081921 34082380 -142891760 + MLT1D LTR MaLR 26 503 -2 501 162 36 9 chrX 34082806 34082917 -142891223 - L1MB7 LINE L1 0 6184 6071 4011 188 149 103 chrX 34082925 34083955 -142890185 - L1MC/D LINE L1 -4803 2156 1175 1291 90 0 0 chrX 34083955 34084121 -142890019 - AluSq SINE Alu -12 301 136 4011 188 149 103 chrX 34084121 34085012 -142889128 - L1MC/D LINE L1 -5784 1175 4 2339 148 48 17 chrX 34086961 34087379 -142886761 + MSTB1 LTR MaLR 2 432 0 1518 251 42 40 chrX 34088042 34088516 -142885624 - MLT1E LTR MaLR 0 593 119 546 100 0 0 chrX 34088514 34088594 -142885546 - MLT1E LTR MaLR -427 166 87 * 298 333 6 57 chrX 34089229 34089388 -142884752 + MER5A DNA MER1_type 14 164 -25 321 275 132 54 chrX 34089422 34089589 -142884551 - MIR SINE MIR -74 188 9 2251 109 0 0 chrX 34089973 34090275 -142883865 - AluSg SINE Alu -8 302 1 4311 192 73 21 chrX 34090437 34091624 -142882516 - L1MDa LINE L1 -4477 2063 815 384 319 59 0 chrX 34091657 34091792 -142882348 - L1MDa LINE L1 -5819 721 579 1905 130 34 8 chrX 34091820 34092173 -142881967 - L1MB7 LINE L1 -9 6569 6208 330 115 0 0 chrX 34092173 34092225 -142881915 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 2299 98 10 0 chrX 34092227 34092523 -142881617 - AluSp SINE Alu -14 299 1 1630 158 3 19 chrX 34092523 34092833 -142881307 - L1MB7 LINE L1 -356 6222 5918 367 267 52 64 chrX 34092841 34093092 -142881048 - L1MCb LINE L1 -5205 840 593 624 258 93 29 chrX 34093453 34093732 -142880408 - L1MCb LINE L1 -5683 362 66 320 170 0 10 chrX 34094168 34094241 -142879899 + Alu SINE Alu 1 47 -255 696 293 98 5 chrX 34095947 34096162 -142877978 - MIR SINE MIR -8 254 20 2498 70 0 0 chrX 34096168 34096467 -142877673 - AluY SINE Alu -12 299 1 2367 81 0 3 chrX 34097177 34097473 -142876667 - AluSc SINE Alu -14 295 1 1058 223 86 66 chrX 34097581 34098039 -142876101 - MLT1D LTR MaLR 0 467 1 1844 149 0 48 chrX 34098359 34098668 -142875472 + AluJb SINE Alu 1 294 -18 813 220 35 9 chrX 34098668 34098889 -142875251 + L1MD3 LINE L1 7751 7980 -15 1190 217 30 110 chrX 34099765 34099809 -142874331 - MSTD LTR MaLR 0 396 350 2026 115 0 21 chrX 34099809 34100135 -142874005 - AluSg SINE Alu 0 320 1 1190 217 30 110 chrX 34100135 34100517 -142873623 - MSTD LTR MaLR -46 350 3 506 68 45 0 chrX 34100536 34100624 -142873516 + (TA)n Simple_repeat Simple_repeat 1 92 0 215 311 0 27 chrX 34100939 34101013 -142873127 + L2 LINE L2 3201 3272 0 1923 157 7 7 chrX 34101684 34101989 -142872151 - AluSx SINE Alu -7 305 1 1050 194 21 11 chrX 34102346 34102532 -142871608 - MER5A DNA MER1_type 0 189 2 1230 264 26 14 chrX 34103021 34103445 -142870695 - L1MB7 LINE L1 -769 5771 5343 * 2109 218 21 37 chrX 34103441 34104293 -142869847 - L1MB7 LINE L1 -1409 5131 4197 920 131 124 9 chrX 34104296 34104582 -142869558 - MLT1A2 LTR MaLR -1 373 1 288 164 45 0 chrX 34104715 34104849 -142869291 + (TA)n Simple_repeat Simple_repeat 1 140 0 200 136 68 0 chrX 34104877 34104936 -142869204 + (TA)n Simple_repeat Simple_repeat 1 63 0 337 164 17 0 chrX 34104959 34105075 -142869065 + (TA)n Simple_repeat Simple_repeat 1 118 0 1842 156 0 3 chrX 34105081 34105364 -142868776 - AluJb SINE Alu -30 282 1 807 242 37 54 chrX 34105364 34105569 -142868571 - L1MB7 LINE L1 -2459 4081 3883 1741 173 20 10 chrX 34105569 34105870 -142868270 - AluJb SINE Alu -7 305 2 807 242 37 54 chrX 34105870 34106015 -142868125 - L1MB7 LINE L1 -2657 3883 3737 1955 211 86 26 chrX 34106048 34106374 -142867766 + L1MDa LINE L1 17 322 -6218 2102 138 13 0 chrX 34106374 34106679 -142867461 - AluSx SINE Alu -3 309 1 1955 211 86 26 chrX 34106679 34107323 -142866817 + L1MDa LINE L1 322 1246 -5294 3506 215 60 24 chrX 34107328 34107418 -142866722 - L1MB7 LINE L1 -2845 3695 3610 2038 122 0 50 chrX 34107418 34107738 -142866402 - AluJb SINE Alu -8 304 1 3506 215 60 24 chrX 34107738 34108109 -142866031 - L1MB7 LINE L1 -2930 3610 3254 928 143 0 0 chrX 34108109 34108242 -142865898 - FLAM_C SINE Alu 0 133 1 3506 215 60 24 chrX 34108242 34108946 -142865194 - L1MB7 LINE L1 -3286 3254 2480 441 0 0 0 chrX 34108946 34108995 -142865145 + (TG)n Simple_repeat Simple_repeat 2 50 0 3506 215 60 24 chrX 34108995 34109054 -142865086 - L1MB7 LINE L1 -4060 2480 2425 477 246 21 0 chrX 34109051 34109193 -142864947 + L1M4 LINE L1 3416 3560 -2586 * 3360 181 28 5 chrX 34109194 34109864 -142864276 + Tigger6a DNA MER2_type 398 1083 0 416 236 104 60 chrX 34109864 34110046 -142864094 + L1ME2 LINE L1 5949 6138 -26 1887 146 3 36 chrX 34110179 34110480 -142863660 + AluJb SINE Alu 1 291 -21 2068 170 0 0 chrX 34110751 34111063 -142863077 - AluJo SINE Alu 0 312 1 2225 78 44 0 chrX 34111360 34111654 -142862486 - AluSp SINE Alu -6 307 1 1070 174 26 0 chrX 34111668 34111858 -142862282 - L1MB7 LINE L1 -19 6165 5971 522 92 1 28 chrX 34111858 34111944 -142862196 - MLT1B LTR MaLR -1 389 315 207 100 0 0 chrX 34111944 34111974 -142862166 + (TC)n Simple_repeat Simple_repeat 2 31 0 1143 217 42 45 chrX 34111974 34112310 -142861830 - MLT1B LTR MaLR -55 335 1 3150 131 13 75 chrX 34112310 34112980 -142861160 - L1MB7 LINE L1 -208 5976 5348 1792 163 29 78 chrX 34113170 34113438 -142860702 - L1M LINE L1 -782 5364 5197 1909 168 3 0 chrX 34113438 34113729 -142860411 + AluJo SINE Alu 1 292 -20 1792 163 29 78 chrX 34113729 34114009 -142860131 - L1M LINE L1 -949 5197 4905 1842 166 3 14 chrX 34114156 34114452 -142859688 - AluJo SINE Alu -19 293 1 8211 104 38 21 chrX 34114565 34115841 -142858299 - HSMAR2 DNA Mariner -2 1300 3 2270 101 7 7 chrX 34116438 34116734 -142857406 + AluSx SINE Alu 1 296 -16 1146 131 25 0 chrX 34116859 34117019 -142857121 - AluJb SINE Alu -9 303 140 858 261 77 56 chrX 34117025 34117416 -142856724 - MLT1J2 LTR MaLR -47 403 5 195 306 0 0 chrX 34117446 34117495 -142856645 + L2 LINE L2 3160 3208 -64 771 289 43 8 chrX 34117567 34117802 -142856338 - MLT1H1 LTR MaLR -311 244 2 788 171 8 0 chrX 34117826 34117955 -142856185 - FLAM_A SINE Alu -1 132 3 994 227 34 65 chrX 34118940 34119231 -142854909 + L2 LINE L2 2260 2541 -773 2558 40 0 3 chrX 34119474 34119772 -142854368 - AluY SINE Alu -14 297 1 1643 232 86 12 chrX 34119830 34120357 -142853783 - MLT1G LTR MaLR -2 588 46 1071 171 0 0 chrX 34120524 34120688 -142853452 - FRAM SINE Alu -13 163 1 2346 101 0 0 chrX 34121187 34121484 -142852656 + AluSx SINE Alu 1 297 -15 2084 253 69 31 chrX 34121853 34121971 -142852169 - L1ME3A LINE L1 -5 6165 6053 1534 168 8 0 chrX 34121971 34122215 -142851925 + AluJo SINE Alu 1 246 -66 2084 253 69 31 chrX 34122215 34123187 -142850953 - L1ME3A LINE L1 -117 6053 5032 3179 71 41 5 chrX 34124249 34124687 -142849453 - L1PA11 LINE L1 -1 6173 5720 217 278 80 66 chrX 34124712 34124764 -142849376 - MIR SINE MIR -109 153 103 2315 91 3 3 chrX 34124764 34125072 -142849068 + AluSg SINE Alu 1 308 -2 217 278 80 66 chrX 34125072 34125170 -142848970 - MIR SINE MIR -159 103 1 1740 172 0 30 chrX 34125340 34125637 -142848503 + AluJo SINE Alu 1 288 -24 1402 112 45 41 chrX 34127435 34127704 -142846436 - L1MD3 LINE L1 0 7995 7726 618 333 15 0 chrX 34127839 34128034 -142846106 - MIR SINE MIR -18 244 47 235 247 282 12 chrX 34129730 34129815 -142844325 - MIR3 SINE MIR -10 198 91 362 321 87 69 chrX 34130146 34130594 -142843546 - L2 LINE L2 -1 3271 2816 181 171 146 0 chrX 34130650 34130691 -142843449 - L2 LINE L2 -586 2728 2682 1222 263 27 6 chrX 34130971 34131302 -142842838 + MER46C DNA MER2_type 1 338 0 2397 85 0 0 chrX 34131908 34132201 -142841939 + AluSg SINE Alu 1 293 -17 1753 169 38 0 chrX 34132732 34133022 -142841118 + AluJb SINE Alu 1 301 -11 704 198 115 0 chrX 34133371 34133528 -142840612 - MER58C DNA MER1_type -1 214 40 1192 206 135 32 chrX 34135285 34135702 -142838438 - L1ME2 LINE L1 -10 6154 5689 2248 61 0 50 chrX 34135726 34136052 -142838088 - AluY SINE Alu 0 311 1 1062 51 14 8 chrX 34136979 34137000 -142837140 - L1P LINE L1 -801 5355 5336 2084 136 0 3 chrX 34137000 34137301 -142836839 + AluJb SINE Alu 2 301 -11 1062 51 14 8 chrX 34137301 34137439 -142836701 - L1P LINE L1 -820 5336 5192 7730 8 0 1 chrX 34137439 34138259 -142835881 + L1PA2 LINE L1 5334 6153 -2 1575 130 91 75 chrX 34138641 34138779 -142835361 + AluJo SINE Alu 1 135 -177 5884 88 6 46 chrX 34138779 34139654 -142834486 - L1MA2 LINE L1 0 6304 5465 1575 130 91 75 chrX 34139654 34139822 -142834318 + AluJo SINE Alu 135 312 0 236 250 30 83 chrX 34140261 34140393 -142833747 + MARNA DNA Mariner 73 197 -389 * 358 252 0 28 chrX 34140327 34140434 -142833706 - MARNA DNA Mariner -138 448 345 2253 133 14 17 chrX 34140534 34140888 -142833252 - L1PA16 LINE L1 0 6166 5814 1691 113 74 12 chrX 34140888 34141143 -142832997 - L1PA15 LINE L1 0 6165 5893 3720 90 98 0 chrX 34141386 34141866 -142832274 + MER1A DNA MER1_type 1 527 0 755 221 6 6 chrX 34141881 34142039 -142832101 - L1MC5 LINE L1 -1114 6847 6690 214 333 58 81 chrX 34142199 34142373 -142831767 + L2 LINE L2 3103 3272 0 1648 141 52 38 chrX 34142531 34142821 -142831319 - AluJo SINE Alu -14 298 5 2083 108 28 3 chrX 34142821 34143108 -142831032 - AluSx SINE Alu -18 294 1 1290 179 9 22 chrX 34143115 34143344 -142830796 - AluJo SINE Alu 0 312 87 15678 135 31 10 chrX 34143740 34144676 -142829464 + L1MB7 LINE L1 1355 2269 -5296 2538 79 0 0 chrX 34144676 34144981 -142829159 + AluY SINE Alu 1 305 -6 15678 135 31 10 chrX 34144981 34147827 -142826313 + L1MB7 LINE L1 2269 5216 -2349 1166 168 5 0 chrX 34147824 34148021 -142826119 - L1 LINE L1 -2176 3970 3773 * 475 84 0 0 chrX 34148015 34148086 -142826054 + L1MA2 LINE L1 6130 6200 -104 * 552 242 0 0 chrX 34148189 34148284 -142825856 + AluJ/FLAM SINE Alu 2 96 -216 2276 110 0 7 chrX 34148403 34148712 -142825428 + AluSp SINE Alu 1 307 -6 1205 162 69 0 chrX 34148712 34148916 -142825224 + L1MB7 LINE L1 6851 7068 -535 2944 179 40 18 chrX 34148926 34149472 -142824668 - MER77 LTR ERV1 -7 598 41 2822 156 49 8 chrX 34149487 34149995 -142824145 + L1MB7 LINE L1 7065 7593 -10 30 45 0 0 chrX 34150124 34150168 -142823972 + AT_rich Low_complexity Low_complexity 1 44 0 2090 90 69 3 chrX 34150314 34150604 -142823536 - AluSg1 SINE Alu 0 309 1 1833 133 54 4 chrX 34150605 34150884 -142823256 - AluJb SINE Alu -19 293 1 1357 97 0 0 chrX 34150888 34151064 -142823076 - AluSg/x SINE Alu 0 310 135 1533 173 28 0 chrX 34151124 34151372 -142822768 - AluJo SINE Alu -57 255 1 1438 162 62 7 chrX 34151395 34151667 -142822473 - L1MA6 LINE L1 -4 6296 6010 210 344 159 0 chrX 34152126 34152283 -142821857 + L3 LINE CR1 1346 1527 -50 2270 93 0 17 chrX 34152648 34152949 -142821191 + AluSx SINE Alu 1 296 -16 2033 124 7 0 chrX 34152952 34153234 -142820906 + AluSx SINE Alu 1 284 -28 567 135 155 140 chrX 34153464 34153488 -142820652 + MER3 DNA MER1_type 7 29 -180 2255 113 0 7 chrX 34153488 34153798 -142820342 + AluSx SINE Alu 1 308 -4 567 135 155 140 chrX 34153798 34153912 -142820228 + MER3 DNA MER1_type 29 151 -58 2292 104 0 0 chrX 34153912 34154200 -142819940 + AluSx SINE Alu 1 288 -24 567 135 155 140 chrX 34154200 34154260 -142819880 + MER3 DNA MER1_type 151 209 0 753 122 0 0 chrX 34154281 34154379 -142819761 + AluJ/FLAM SINE Alu 5 102 -210 33 20 0 20 chrX 34154385 34154407 -142819733 + AT_rich Low_complexity Low_complexity 1 22 -28 1975 141 0 3 chrX 34154407 34154698 -142819442 - AluJb SINE Alu -22 290 1 33 20 0 20 chrX 34154698 34154726 -142819414 + AT_rich Low_complexity Low_complexity 22 50 0 1061 123 94 71 chrX 34156126 34156338 -142817802 - MER20 DNA MER1_type -1 218 2 553 219 34 27 chrX 34156571 34156717 -142817423 - MIR SINE MIR -26 236 90 356 321 107 0 chrX 34157771 34157911 -142816229 - L2 LINE L2 -1 3271 3117 264 137 0 0 chrX 34161103 34161154 -142812986 - L1ME3 LINE L1 -2 6160 6110 23 0 0 0 chrX 34162427 34162450 -142811690 + AT_rich Low_complexity Low_complexity 1 23 0 294 29 0 0 chrX 34162851 34162886 -142811254 + (TC)n Simple_repeat Simple_repeat 2 36 0 1761 138 14 14 chrX 34163542 34163824 -142810316 - AluJo SINE Alu -18 294 13 938 118 0 22 chrX 34164733 34164868 -142809272 + FLAM_C SINE Alu 1 132 -1 440 273 43 19 chrX 34164945 34165106 -142809034 - MIR SINE MIR -9 253 89 704 144 0 0 chrX 34165453 34165557 -142808583 + MLT1D LTR MaLR 13 116 -510 1712 172 117 25 chrX 34165616 34165983 -142808157 + MLT1D LTR MaLR 105 505 0 223 287 213 0 chrX 34166315 34166465 -142807675 + L3 LINE CR1 1257 1438 -139 274 88 27 11 chrX 34166495 34166549 -142807591 + L1ME1 LINE L1 2593 2687 -3891 624 105 0 0 chrX 34166551 34166637 -142807503 + AluSq SINE Alu 2 87 -226 1063 78 0 0 chrX 34166637 34166785 -142807355 + AluSp/q SINE Alu 156 303 0 2158 90 10 33 chrX 34166799 34167098 -142807042 + AluSx SINE Alu 1 292 -20 1563 217 132 57 chrX 34167100 34167375 -142806765 + L1ME1 LINE L1 3841 4094 -2446 2044 133 0 7 chrX 34167375 34167676 -142806464 + AluSx SINE Alu 1 299 -13 1563 217 132 57 chrX 34167676 34167826 -142806314 + L1ME1 LINE L1 4094 4231 -2309 2238 116 0 7 chrX 34167826 34168136 -142806004 + AluSx SINE Alu 1 308 -4 1563 217 132 57 chrX 34168136 34168249 -142805891 + L1ME1 LINE L1 4231 4420 -2120 966 132 0 0 chrX 34168249 34168385 -142805755 + AluJo SINE Alu 1 136 -176 1631 160 76 6 chrX 34168405 34168749 -142805391 - L1 LINE L1 -818 5328 4961 974 134 0 15 chrX 34168749 34168883 -142805257 - FLAM_C SINE Alu -1 132 1 283 267 0 0 chrX 34168884 34168959 -142805181 + L1ME1 LINE L1 5554 5628 -912 * 776 222 47 75 chrX 34168946 34169225 -142804915 + L1ME1 LINE L1 6241 6511 -49 1856 164 0 13 chrX 34169225 34169523 -142804617 + AluJo SINE Alu 1 294 -18 454 113 127 0 chrX 34170135 34170206 -142803934 - MADE1 DNA Mariner 0 80 1 2140 112 28 0 chrX 34170326 34170611 -142803529 + AluSx SINE Alu 1 293 -19 1277 93 0 0 chrX 34171039 34171200 -142802940 - AluJo SINE Alu -23 289 129 978 104 0 8 chrX 34171257 34171391 -142802749 - AluJo SINE Alu -179 133 1 2217 88 0 37 chrX 34171647 34171973 -142802167 + AluSx SINE Alu 1 315 0 897 303 7 22 chrX 34171982 34172253 -142801887 + MER89-int LTR ERV1 2401 2667 -1980 1175 111 0 17 chrX 34172254 34172426 -142801714 - AluSq SINE Alu -10 303 135 375 200 70 24 chrX 34172457 34172557 -142801583 + MER89-int LTR ERV1 4990 5951 -1586 1485 128 0 18 chrX 34172915 34173142 -142800998 + AluJb SINE Alu 86 308 -4 1839 157 0 17 chrX 34173321 34173614 -142800526 + AluJo SINE Alu 1 288 -24 7094 19 0 0 chrX 34173776 34174545 -142799595 + L1PA2 LINE L1 5387 6155 0 1433 172 144 57 chrX 34174564 34174747 -142799393 + MER90 LTR ERV1 3 169 -445 1392 159 120 22 chrX 34174747 34175023 -142799117 + AluJo SINE Alu 1 303 -9 2251 95 3 0 chrX 34175028 34175313 -142798827 + AluY SINE Alu 1 286 -25 956 130 6 0 chrX 34175313 34175474 -142798666 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 1433 172 144 57 chrX 34175474 34175695 -142798445 + MER90 LTR ERV1 172 372 -242 1675 159 46 14 chrX 34175695 34175978 -142798162 - AluSx SINE Alu -20 292 1 1433 172 144 57 chrX 34175978 34176094 -142798046 + MER90 LTR ERV1 372 579 -35 372 267 21 73 chrX 34227216 34227407 -142746733 + MER46C DNA MER2_type 156 336 -2 1058 289 55 45 chrX 34228090 34228686 -142745454 - L2 LINE L2 0 3313 2707 910 236 14 47 chrX 34233577 34233874 -142740266 - L1ME3A LINE L1 -3 6167 5881 466 198 169 53 chrX 34233880 34234123 -142740017 - L1MC5 LINE L1 -36 7925 7655 269 307 11 11 chrX 34234300 34234388 -142739752 + MER91B DNA MER1_type 88 175 -15 27 62 0 0 chrX 34235143 34235191 -142738949 + AT_rich Low_complexity Low_complexity 1 48 0 2153 118 17 0 chrX 34236694 34236981 -142737159 - AluSx SINE Alu -20 292 1 273 136 34 17 chrX 34237160 34237219 -142736921 - MLT1J1 LTR MaLR -316 130 71 239 235 132 0 chrX 34237606 34237674 -142736466 - L2 LINE L2 -38 3234 3158 847 114 250 6 chrX 34237785 34237961 -142736179 + MER20 DNA MER1_type 1 219 0 323 195 39 13 chrX 34237973 34238050 -142736090 - Charlie1 DNA MER1_type -4 2757 2679 412 182 147 77 chrX 34238071 34238214 -142735926 - Charlie1 DNA MER1_type -2602 159 7 296 311 194 17 chrX 34238215 34238395 -142735745 + MIR SINE MIR 4 215 -47 266 292 0 0 chrX 34238916 34238988 -142735152 + (CGG)n Simple_repeat Simple_repeat 2 73 0 1101 178 73 170 chrX 34240047 34240489 -142733651 + L1MC4 LINE L1 7513 7632 -176 1374 120 76 7 chrX 34240489 34240764 -142733376 + L1MA8 LINE L1 5998 6291 0 1101 178 73 170 chrX 34240764 34240926 -142733214 + L1MC4 LINE L1 7632 7808 0 674 183 59 35 chrX 34241180 34241349 -142732791 - L1MD3 LINE L1 -459 7536 7364 462 241 61 85 chrX 34241353 34241565 -142732575 + L2 LINE L2 2733 2939 -375 598 290 34 17 chrX 34241584 34241760 -142732380 - MER110-int LTR ERV1 -2318 2329 2151 914 101 20 0 chrX 34241906 34242054 -142732086 + L1MB5 LINE L1 6024 6174 0 265 270 54 9 chrX 34242620 34242731 -142731409 + L1M4 LINE L1 4317 4432 -1714 348 163 216 32 chrX 34242746 34242866 -142731274 - HsTC2 DNA Tc2 -1761 137 1 820 135 0 0 chrX 34243387 34243498 -142730642 + AluSg/x SINE Alu 176 286 -24 447 19 0 0 chrX 34243655 34243707 -142730433 + (TG)n Simple_repeat Simple_repeat 2 53 0 181 302 19 0 chrX 34243774 34243827 -142730313 - MIR SINE MIR 0 262 209 298 131 49 0 chrX 34243918 34243979 -142730161 + L1MB2 LINE L1 6101 6164 -7 2243 99 13 7 chrX 34244064 34244367 -142729773 - AluSx SINE Alu -7 305 1 216 0 0 0 chrX 34244367 34244391 -142729749 + (T)n Simple_repeat Simple_repeat 1 24 0 185 178 14 41 chrX 34247004 34247077 -142727063 + CT-rich Low_complexity Low_complexity 4 74 0 731 121 52 0 chrX 34248745 34248861 -142725279 + AluSg/x SINE Alu 173 294 -18 2569 45 0 0 chrX 34248861 34249175 -142724965 + AluY SINE Alu 1 311 0 296 342 9 18 chrX 34249521 34249632 -142724508 + L2 LINE L2 2266 2375 -939 212 214 0 0 chrX 34249657 34249699 -142724441 - L2 LINE L2 -49 3223 3182 1356 101 0 0 chrX 34249977 34250146 -142723994 - AluSg/x SINE Alu -11 301 133 2151 130 3 3 chrX 34251424 34251723 -142722417 - AluSx SINE Alu -13 299 1 743 322 74 44 chrX 34251728 34252203 -142721937 + L2 LINE L2 2824 3312 -1 2325 113 0 0 chrX 34252618 34252920 -142721220 + AluSx SINE Alu 1 302 -10 332 313 94 0 chrX 34254410 34254538 -142719602 - MIR SINE MIR -34 228 89 842 185 0 0 chrX 34254745 34254880 -142719260 + FRAM SINE Alu 19 153 -23 277 178 322 0 chrX 34255356 34255446 -142718694 - MLT1K LTR MaLR -34 554 436 235 271 43 0 chrX 34255451 34255521 -142718619 - MIR SINE MIR -81 181 109 2438 85 0 0 chrX 34255543 34255836 -142718304 + AluSx SINE Alu 1 293 -19 418 258 90 70 chrX 34256042 34256150 -142717990 - L1M4 LINE L1 -6292 250 146 2489 63 3 0 chrX 34256150 34256453 -142717687 - AluY SINE Alu -7 304 1 418 258 90 70 chrX 34256453 34256473 -142717667 - L1M4 LINE L1 -6396 146 128 1814 117 137 48 chrX 34256473 34256866 -142717274 - MSTA LTR MaLR 0 428 1 418 258 90 70 chrX 34256866 34256980 -142717160 - L1M4 LINE L1 -6414 128 2 2177 106 0 46 chrX 34256982 34257148 -142716992 - AluY SINE Alu -22 289 142 2632 71 0 0 chrX 34257148 34257456 -142716684 - AluSg SINE Alu -2 308 1 2177 106 0 46 chrX 34257456 34257592 -142716548 - AluY SINE Alu -169 142 1 664 164 0 57 chrX 34257659 34257799 -142716341 - FLAM_C SINE Alu 0 143 12 5215 29 0 0 chrX 34257888 34258513 -142715627 - L1PA3 LINE L1 -5 6150 5526 1900 168 0 10 chrX 34258517 34258820 -142715320 - AluJo SINE Alu -12 300 1 926 189 61 9 chrX 34258820 34259048 -142715092 - L1MEc LINE L1 -4303 2093 1854 974 168 0 0 chrX 34259048 34259197 -142714943 - FRAM SINE Alu -2 174 26 2460 93 7 0 chrX 34259222 34259532 -142714608 + AluSx SINE Alu 1 312 0 1003 285 45 33 chrX 34259593 34259673 -142714467 - L1MEc LINE L1 -4759 1637 1559 2289 113 0 7 chrX 34259673 34259975 -142714165 - AluSx SINE Alu -12 300 1 1003 285 45 33 chrX 34259975 34260469 -142713671 - L1MEc LINE L1 -4837 1559 1056 2415 236 81 60 chrX 34260525 34261318 -142712822 - MER21B LTR ERV1 -54 809 1 928 159 41 9 chrX 34261330 34261550 -142712590 - L1MEc LINE L1 -5455 941 715 2738 94 7 2 chrX 34261573 34261976 -142712164 - L1M2 LINE L1 -572 5728 5324 2282 109 13 0 chrX 34261976 34262279 -142711861 - AluSx SINE Alu -5 307 1 460 93 0 0 chrX 34262376 34262451 -142711689 - L1M2 LINE L1 -1465 4681 4607 2413 101 0 0 chrX 34262460 34262767 -142711373 - AluSx SINE Alu -5 307 1 1908 167 0 13 chrX 34262771 34263070 -142711070 - AluJo SINE Alu -17 295 1 505 90 0 0 chrX 34263071 34263138 -142711002 + MER50 LTR ERV1 645 711 -23 527 219 130 0 chrX 34263139 34263285 -142710855 - L1MEc LINE L1 -6195 201 37 2306 105 0 13 chrX 34263654 34263960 -142710180 + AluSx SINE Alu 1 302 -10 2290 100 7 0 chrX 34263960 34264251 -142709889 + AluSg SINE Alu 1 293 -17 1996 162 0 0 chrX 34264958 34265347 -142708793 - AluJb SINE Alu 0 400 12 2358 103 0 0 chrX 34265385 34265687 -142708453 + AluSg SINE Alu 1 302 -8 1931 114 139 0 chrX 34265751 34266024 -142708116 + AluSq SINE Alu 1 311 -2 1764 155 24 7 chrX 34266315 34266611 -142707529 + AluJb SINE Alu 1 301 -11 2423 75 3 0 chrX 34266611 34266904 -142707236 - AluY SINE Alu -17 294 1 2412 79 7 10 chrX 34266922 34267227 -142706913 + AluSg SINE Alu 1 304 -6 2638 116 131 17 chrX 34267302 34267775 -142706365 - MER1A DNA MER1_type 0 527 1 2238 98 3 7 chrX 34268355 34268652 -142705488 + AluY SINE Alu 1 296 -15 1398 174 77 12 chrX 34268887 34269185 -142704955 - AluJb SINE Alu 0 320 6 2077 108 10 34 chrX 34269198 34269495 -142704645 - AluSq SINE Alu -18 295 6 2319 110 0 0 chrX 34269537 34269838 -142704302 - AluSq SINE Alu -9 304 4 1773 191 3 0 chrX 34270968 34271267 -142702873 - AluJo SINE Alu -12 300 1 2113 125 0 49 chrX 34271292 34271483 -142702657 - AluSx SINE Alu -1 311 141 2393 102 3 10 chrX 34271483 34271796 -142702344 - AluSx SINE Alu -1 311 1 2113 125 0 49 chrX 34271796 34271931 -142702209 - AluSx SINE Alu -171 141 1 1559 199 0 11 chrX 34272173 34272445 -142701695 + AluJo SINE Alu 1 269 -43 1379 92 31 0 chrX 34272892 34273088 -142701052 - MER30 DNA MER1_type -25 205 4 352 159 0 0 chrX 34274219 34274288 -142699852 - FLAM_A SINE Alu -19 114 58 585 229 0 0 chrX 34274288 34274428 -142699712 + AluJb SINE Alu 175 314 0 835 140 0 70 chrX 34274430 34274573 -142699567 - AluJo SINE Alu -161 151 19 2009 133 3 7 chrX 34274614 34274908 -142699232 + AluSq SINE Alu 21 313 0 309 251 95 75 chrX 34274915 34275013 -142699127 + L1MC4 LINE L1 7501 7595 -428 2465 95 0 0 chrX 34275013 34275319 -142698821 + AluSg SINE Alu 1 306 -4 309 251 95 75 chrX 34275319 34275415 -142698725 + L1MC4 LINE L1 7595 7754 -269 2199 141 0 3 chrX 34275462 34275775 -142698365 + AluSx SINE Alu 1 312 0 2232 131 3 13 chrX 34275789 34276103 -142698037 + AluSx SINE Alu 1 311 -1 1572 126 18 35 chrX 34276377 34276710 -142697430 + MER4A LTR ERV1 262 647 -17 295 281 240 7 chrX 34276760 34276906 -142697234 - MIR SINE MIR -8 254 75 279 0 0 0 chrX 34276939 34276970 -142697170 + (TA)n Simple_repeat Simple_repeat 2 32 0 1153 68 0 0 chrX 34276970 34277117 -142697023 - L1PA5 LINE L1 -9 6145 5999 2371 70 3 3 chrX 34277127 34277432 -142696708 - AluSp SINE Alu 0 305 1 297 0 0 0 chrX 34277432 34277465 -142696675 + (T)n Simple_repeat Simple_repeat 1 33 0 1203 127 5 14 chrX 34277551 34277763 -142696377 - MER6 DNA MER2_type 0 865 656 546 88 0 0 chrX 34277764 34277832 -142696308 + AluS SINE Alu 2 69 -244 1910 109 0 33 chrX 34277832 34278108 -142696032 - AluSx SINE Alu -38 274 8 2458 84 3 0 chrX 34279709 34280020 -142694120 + AluSp SINE Alu 1 312 -1 24 67 0 0 chrX 34280071 34280116 -142694024 + AT_rich Low_complexity Low_complexity 1 45 0 1892 126 0 0 chrX 34280150 34280404 -142693736 + AluSx SINE Alu 1 254 -58 259 299 180 9 chrX 34280543 34280754 -142693386 - L2 LINE L2 -257 3056 2810 2086 151 3 3 chrX 34280984 34281288 -142692852 - AluJo SINE Alu -8 304 1 257 0 0 29 chrX 34281311 34281345 -142692795 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2360 69 0 0 chrX 34281347 34281622 -142692518 - AluY SINE Alu -36 275 1 2411 87 0 3 chrX 34281624 34281922 -142692218 - AluSx SINE Alu -15 297 1 482 266 32 0 chrX 34281946 34282070 -142692070 - MIR SINE MIR -101 161 34 2324 100 0 16 chrX 34282233 34282565 -142691575 - AluSg SINE Alu 0 310 2 2053 141 6 10 chrX 34282595 34282908 -142691232 - AluSx SINE Alu 0 312 1 258 325 48 48 chrX 34282908 34283074 -142691066 - L2 LINE L2 -565 2749 2584 1430 168 116 11 chrX 34283239 34283507 -142690633 + AluJb SINE Alu 1 296 -16 22 0 0 0 chrX 34283509 34283531 -142690609 + AT_rich Low_complexity Low_complexity 1 22 0 2154 122 7 0 chrX 34283540 34283834 -142690306 + AluSx SINE Alu 1 296 -16 248 330 52 0 chrX 34283907 34284022 -142690118 - L2 LINE L2 -916 2398 2278 229 163 349 12 chrX 34284113 34284199 -142689941 + MER103 DNA DNA 4 118 -48 714 175 0 17 chrX 34284240 34284360 -142689780 - FLAM_C SINE Alu -15 118 1 276 269 17 59 chrX 34284891 34285010 -142689130 - L1ME3A LINE L1 -69 6101 5988 2023 120 32 26 chrX 34285034 34285343 -142688797 - AluSx SINE Alu 0 312 2 2295 95 0 0 chrX 34285609 34285929 -142688211 + AluSx SINE Alu 1 320 0 441 290 68 17 chrX 34285972 34286148 -142687992 + REP3 LTR ERV 1 185 -377 1499 153 27 5 chrX 34286150 34286373 -142687767 - AluJb SINE Alu -19 293 66 2364 106 0 0 chrX 34286373 34286673 -142687467 + AluSx SINE Alu 1 301 -11 577 118 0 0 chrX 34286673 34286749 -142687391 - AluJb SINE Alu -235 77 2 228 206 0 96 chrX 34286751 34286824 -142687316 + REP3 LTR ERV 224 289 -273 2326 107 0 3 chrX 34286845 34287144 -142686996 - AluSx SINE Alu -14 298 1 1815 178 3 13 chrX 34287307 34287616 -142686524 + AluJb SINE Alu 1 306 -6 945 248 21 63 chrX 34287906 34288031 -142686109 + HERVL40 LTR ERVL 2050 2179 -3351 2119 138 0 7 chrX 34288031 34288329 -142685811 + AluSx SINE Alu 1 296 -16 945 248 21 63 chrX 34288329 34288489 -142685651 + HERVL40 LTR ERVL 2179 2323 -3207 402 294 175 6 chrX 34288511 34288688 -142685452 + HERVL40 LTR ERVL 3510 3716 -1814 4242 140 36 4 chrX 34288688 34289372 -142684768 + MER50 LTR ERV1 1 706 -28 2294 107 0 10 chrX 34289464 34289772 -142684368 + AluSx SINE Alu 3 307 -5 1966 156 14 0 chrX 34289807 34290102 -142684038 - AluJb SINE Alu -13 299 1 1478 134 14 0 chrX 34290606 34290829 -142683311 + AluJb SINE Alu 86 311 -1 4156 214 36 79 chrX 34290938 34291115 -142683025 + L1MDb LINE L1 640 823 -5583 1888 170 0 0 chrX 34291115 34291397 -142682743 + AluJo SINE Alu 1 282 -30 4156 214 36 79 chrX 34291397 34291602 -142682538 + L1MDb LINE L1 823 1035 -5371 2032 135 0 52 chrX 34291602 34291929 -142682211 + AluJb SINE Alu 1 310 -2 2321 112 0 13 chrX 34291939 34292253 -142681887 + AluSx SINE Alu 1 310 -2 4156 214 36 79 chrX 34292253 34292383 -142681757 + L1MDb LINE L1 1044 1178 -5228 1967 155 0 0 chrX 34292383 34292661 -142681479 + AluJb SINE Alu 2 279 -33 198 118 0 0 chrX 34292665 34292699 -142681441 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4156 214 36 79 chrX 34292699 34292788 -142681352 + L1MDb LINE L1 1181 1272 -5134 2240 106 14 0 chrX 34292788 34293081 -142681059 + AluSg SINE Alu 4 300 -10 2052 95 4 0 chrX 34293084 34293346 -142680794 + AluSp SINE Alu 6 268 -45 4156 214 36 79 chrX 34293346 34293619 -142680521 + L1MDb LINE L1 1274 1557 -4849 2192 124 0 10 chrX 34293619 34293925 -142680215 - AluSx SINE Alu -9 303 1 4156 214 36 79 chrX 34293925 34294283 -142679857 + L1MDb LINE L1 1557 1929 -4477 1702 202 21 39 chrX 34294283 34294664 -142679476 - MLT1A2 LTR MaLR 0 374 1 4156 214 36 79 chrX 34294664 34295079 -142679061 + L1MDb LINE L1 1929 2226 -4180 1377 183 12 120 chrX 34295079 34295488 -142678652 - MLT1A1 LTR MaLR 0 365 1 4156 214 36 79 chrX 34295488 34295642 -142678498 + L1MDb LINE L1 2226 2385 -4021 442 103 0 0 chrX 34295627 34295695 -142678445 + L1M2 LINE L1 5419 5486 -805 * 643 218 0 0 chrX 34295695 34295805 -142678335 + FLAM_A SINE Alu 1 110 -32 2464 88 3 0 chrX 34295811 34296117 -142678023 - AluSg SINE Alu -1 309 3 4433 147 47 2 chrX 34296130 34296917 -142677223 + L1MA7 LINE L1 5470 6291 0 1795 123 105 0 chrX 34296973 34297249 -142676891 - AluSx SINE Alu -7 305 1 362 94 0 0 chrX 34297249 34297302 -142676838 + MER4C LTR ERV1 404 456 -9 2247 115 3 0 chrX 34297302 34297606 -142676534 + AluSx SINE Alu 1 305 -7 468 65 0 0 chrX 34297643 34297705 -142676435 + MER4C LTR ERV1 404 465 0 514 185 65 130 chrX 34297705 34297777 -142676363 - L1MDa LINE L1 -6194 346 271 757 180 0 8 chrX 34297777 34297905 -142676235 - FLAM_A SINE Alu -4 129 3 514 185 65 130 chrX 34297905 34298048 -142676092 - L1MDa LINE L1 -6269 271 145 884 94 0 0 chrX 34298049 34298166 -142675974 + AluSg/x SINE Alu 186 302 -10 2321 81 112 13 chrX 34298166 34298549 -142675591 - MER4C LTR ERV1 -44 421 1 2324 98 10 0 chrX 34298586 34298882 -142675258 + AluSx SINE Alu 1 299 -13 1295 166 89 46 chrX 34298965 34299194 -142674946 + LTR49 LTR ERV1 1 250 -345 2128 113 28 0 chrX 34299194 34299510 -142674630 + AluSx SINE Alu 1 324 0 1295 166 89 46 chrX 34299510 34299604 -142674536 + LTR49 LTR ERV1 250 339 -256 680 186 10 7 chrX 34299579 34299777 -142674363 + LTR29 LTR ERV1 387 622 0 * 343 158 13 13 chrX 34299956 34300032 -142674108 + CT-rich Low_complexity Low_complexity 4 79 0 1921 135 64 10 chrX 34300032 34300329 -142673811 - AluSq SINE Alu 0 313 1 2426 77 0 7 chrX 34300329 34300627 -142673513 - AluSc SINE Alu -12 297 1 1648 135 19 98 chrX 34300633 34300958 -142673182 - AluJo SINE Alu -11 301 3 2312 125 3 3 chrX 34301007 34301319 -142672821 + AluSx SINE Alu 1 312 0 2215 113 0 0 chrX 34301416 34301734 -142672406 - AluSq SINE Alu 0 318 1 246 212 12 118 chrX 34301760 34301803 -142672337 + MER58A DNA MER1_type 2 33 -308 1831 86 8 4 chrX 34301803 34302046 -142672094 - AluSq SINE Alu -2 311 68 246 212 12 118 chrX 34302046 34302087 -142672053 + MER58A DNA MER1_type 33 77 -147 548 223 68 59 chrX 34302089 34302231 -142671909 + L1MD2 LINE L1 4316 4462 -1684 2551 64 0 3 chrX 34302231 34302529 -142671611 + AluSx SINE Alu 1 297 -15 548 223 68 59 chrX 34302529 34302606 -142671534 + L1MD2 LINE L1 4462 4537 -1609 1938 150 3 14 chrX 34302625 34302918 -142671222 + AluJb SINE Alu 5 294 -18 457 266 65 47 chrX 34302918 34303087 -142671053 + MER41C LTR ERV1 43 214 -340 1924 159 0 25 chrX 34303193 34303513 -142670627 - AluJb SINE Alu 0 312 1 606 251 23 0 chrX 34303514 34303685 -142670455 + L1MD2 LINE L1 5055 5229 -917 * 2409 201 119 42 chrX 34303675 34304216 -142669924 + L1MD2 LINE L1 5571 6183 -176 207 0 0 0 chrX 34304216 34304239 -142669901 + (CA)n Simple_repeat Simple_repeat 2 24 0 2409 201 119 42 chrX 34304239 34304420 -142669720 + L1MD2 LINE L1 6183 6349 -10 1930 139 0 60 chrX 34304430 34304562 -142669578 + AluJb SINE Alu 9 147 -165 2565 77 0 0 chrX 34304562 34304873 -142669267 + AluY SINE Alu 1 311 0 1930 139 0 60 chrX 34304873 34305057 -142669083 + AluJb SINE Alu 147 306 -6 1770 184 57 28 chrX 34305522 34305875 -142668265 - MLT1A1 LTR MaLR 0 365 3 2340 119 0 0 chrX 34305937 34306247 -142667893 - AluSx SINE Alu -2 310 1 876 141 0 0 chrX 34306330 34306458 -142667682 + AluJ SINE Alu 1 128 -174 1704 139 28 3 chrX 34306458 34306737 -142667403 + L1PA13 LINE L1 5872 6160 -3 472 200 111 0 chrX 34306741 34306831 -142667309 + AluJ SINE Alu 121 220 -92 3877 102 60 6 chrX 34306831 34307381 -142666759 + LTR19B LTR ERV1 1 580 0 54080 91 18 9 chrX 34307381 34307694 -142666446 + HERVFH19I LTR ERV1 1 310 -7409 204 40 0 0 chrX 34307694 34307719 -142666421 + (TC)n Simple_repeat Simple_repeat 2 26 0 54080 91 18 9 chrX 34307719 34315056 -142659084 + HERVFH19I LTR ERV1 310 7716 -3 3841 111 54 13 chrX 34315059 34315616 -142658524 + LTR19B LTR ERV1 1 580 0 599 71 36 0 chrX 34315616 34315700 -142658440 + AluJ SINE Alu 216 302 -10 1972 112 0 68 chrX 34315702 34315835 -142658305 + AluSx SINE Alu 3 144 -168 2459 84 0 3 chrX 34315835 34316134 -142658006 + AluSq SINE Alu 1 298 -15 1972 112 0 68 chrX 34316134 34316321 -142657819 + AluSx SINE Alu 144 301 -11 1193 107 0 0 chrX 34316720 34316879 -142657261 - AluSg/x SINE Alu -15 297 139 2253 102 0 16 chrX 34316883 34316899 -142657241 - AluSq SINE Alu -14 299 284 378 0 0 0 chrX 34316899 34316941 -142657199 + (TG)n Simple_repeat Simple_repeat 2 43 0 2253 102 0 16 chrX 34316941 34317228 -142656912 - AluSq SINE Alu -29 284 1 746 211 240 66 chrX 34317289 34317730 -142656410 + REP3 LTR ERV 1 518 -44 209 333 9 27 chrX 34318148 34318259 -142655881 - MIR SINE MIR -71 191 83 1807 147 0 35 chrX 34318418 34318703 -142655437 + AluJb SINE Alu 21 295 -17 426 181 52 0 chrX 34318712 34318828 -142655312 + GA-rich Low_complexity Low_complexity 5 126 0 1012 129 14 0 chrX 34318921 34319099 -142655041 + AluSg/x SINE Alu 143 312 0 209 30 61 0 chrX 34319754 34319787 -142654353 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1110 115 11 71 chrX 34319907 34320053 -142654087 + FRAM SINE Alu 1 135 -177 1564 182 55 4 chrX 34320053 34320328 -142653812 - AluJo SINE Alu -23 289 1 1110 115 11 71 chrX 34320328 34320363 -142653777 + FRAM SINE Alu 135 171 -5 2236 110 3 0 chrX 34320477 34320767 -142653373 + AluSx SINE Alu 1 291 -21 2322 80 0 7 chrX 34320769 34321055 -142653085 + AluSc SINE Alu 1 284 -25 229 0 83 0 chrX 34321058 34321094 -142653046 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 346 213 43 0 chrX 34321096 34321190 -142652950 - MER113 DNA MER1_type? -412 109 12 25 65 0 0 chrX 34321241 34321287 -142652853 + AT_rich Low_complexity Low_complexity 1 46 0 1861 168 0 26 chrX 34321338 34321670 -142652470 - AluSx SINE Alu 0 312 1 481 250 0 0 chrX 34321727 34321831 -142652309 - U13 snRNA snRNA 0 104 1 2208 88 10 14 chrX 34322191 34322551 -142651589 - AluSp SINE Alu 0 313 1 1984 124 28 0 chrX 34322711 34322993 -142651147 + AluJb SINE Alu 1 290 -22 2128 114 0 27 chrX 34323008 34323305 -142650835 + AluSx SINE Alu 8 296 -16 451 129 54 32 chrX 34323370 34323463 -142650677 - AluSg/x SINE Alu -6 306 212 2300 99 0 7 chrX 34323549 34323853 -142650287 - AluSx SINE Alu -10 302 1 2319 112 0 0 chrX 34324371 34324676 -142649464 + AluSg SINE Alu 1 305 -5 792 139 47 16 chrX 34324687 34324816 -142649324 + AluJo/FLAM SINE Alu 1 133 -169 732 120 51 17 chrX 34324702 34324819 -142649321 + FLAM_C SINE Alu 16 136 -7 2195 91 21 0 chrX 34324819 34325104 -142649036 + AluSx SINE Alu 1 291 -21 192 77 0 0 chrX 34325105 34325131 -142649009 + (CGAGG)n Simple_repeat Simple_repeat 4 29 0 316 153 0 22 chrX 34325147 34325211 -142648929 + FLAM_A SINE Alu 18 63 -70 1472 214 76 24 chrX 34325220 34325603 -142648537 + L1MD1 LINE L1 5681 6083 -159 1035 194 52 9 chrX 34325613 34325845 -142648295 + L1MD2 LINE L1 6108 6349 -10 2309 93 3 0 chrX 34325855 34326166 -142647974 + AluSp SINE Alu 1 312 -1 891 192 66 20 chrX 34326172 34326497 -142647643 + L1MC4 LINE L1 6993 7486 -556 1112 113 0 0 chrX 34326726 34326876 -142647264 + AluSq/x SINE Alu 1 150 -163 1723 75 9 0 chrX 34326877 34327104 -142647036 + AluSp SINE Alu 73 301 -12 266 244 158 0 chrX 34328731 34328813 -142645327 + L2 LINE L2 3171 3265 -7 605 154 9 0 chrX 34328836 34328946 -142645194 + L1MC4 LINE L1 7471 7581 -461 1962 102 37 3 chrX 34328953 34329247 -142644893 - AluSx SINE Alu -6 306 3 1831 166 0 0 chrX 34329256 34329563 -142644577 - AluJo SINE Alu -5 307 1 574 273 220 11 chrX 34329565 34329668 -142644472 + L1MC4 LINE L1 7694 7774 -268 2091 115 0 3 chrX 34329668 34329972 -142644168 - AluSx SINE Alu -9 303 1 574 273 220 11 chrX 34329972 34330154 -142643986 + L1MC4 LINE L1 7774 8039 -3 1877 110 51 3 chrX 34330190 34330482 -142643658 - AluSg SINE Alu -4 306 1 2340 60 0 17 chrX 34330501 34330801 -142643339 + AluY SINE Alu 1 295 -16 229 300 0 0 chrX 34330807 34330867 -142643273 - L1MC5 LINE L1 -70 7891 7832 458 215 8 77 chrX 34330911 34331008 -142643132 - MIR SINE MIR -140 122 35 2426 55 0 16 chrX 34331008 34331316 -142642824 - AluY SINE Alu -8 303 1 458 215 8 77 chrX 34331316 34331348 -142642792 - MIR SINE MIR -227 35 2 2184 102 3 3 chrX 34331461 34331774 -142642366 - AluSq SINE Alu 0 313 1 671 254 75 32 chrX 34331777 34332056 -142642084 - L1MC4 LINE L1 -152 7890 7600 646 171 0 54 chrX 34332094 34332223 -142641917 + FLAM_C SINE Alu 19 140 -3 1066 200 0 14 chrX 34332232 34332442 -142641698 - AluJb SINE Alu -15 297 91 745 143 0 0 chrX 34332506 34332618 -142641522 + FLAM_C SINE Alu 4 115 -18 1082 129 134 0 chrX 34333759 34333842 -142640298 + MER30 DNA MER1_type 20 90 -140 188 35 35 0 chrX 34333842 34333871 -142640269 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1082 129 134 0 chrX 34333871 34333973 -142640167 + MER30 DNA MER1_type 90 230 0 2009 87 7 24 chrX 34334452 34334750 -142639390 - AluSc SINE Alu -16 293 1 1646 184 0 10 chrX 34334750 34335055 -142639085 - AluJo SINE Alu -10 302 1 1011 180 184 16 chrX 34335296 34335414 -142638726 + AluJb SINE Alu 1 98 -204 255 61 0 0 chrX 34335414 34335447 -142638693 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1011 180 184 16 chrX 34335447 34335573 -142638567 + AluJb SINE Alu 98 286 -16 306 139 23 151 chrX 34335595 34335681 -142638459 + Alu SINE Alu 245 302 0 1398 159 35 35 chrX 34335722 34336005 -142638135 - AluJb SINE Alu -12 300 18 776 108 62 31 chrX 34336014 34336143 -142637997 - FLAM_C SINE Alu 0 133 1 29 28 0 0 chrX 34336152 34336188 -142637952 + AT_rich Low_complexity Low_complexity 1 36 0 2341 262 24 11 chrX 34336193 34336596 -142637544 + L1MD2 LINE L1 4439 4856 -1290 1961 141 3 6 chrX 34336596 34336908 -142637232 - AluSx SINE Alu -1 311 1 2341 262 24 11 chrX 34336908 34337225 -142636915 + L1MD2 LINE L1 4856 5168 -978 712 187 22 14 chrX 34337225 34337364 -142636776 + FLAM_C SINE Alu 2 141 -2 498 206 42 0 chrX 34337407 34337576 -142636564 + L1MD2 LINE L1 5221 5395 -751 1019 178 0 43 chrX 34337581 34337789 -142636351 + AluJo SINE Alu 1 199 -113 1373 200 73 22 chrX 34337798 34338409 -142635731 + L1MD2 LINE L1 5681 6330 -29 1888 137 0 0 chrX 34338418 34338729 -142635411 - AluSx SINE Alu 0 311 1 1685 179 0 0 chrX 34338734 34339030 -142635110 - AluJo SINE Alu -16 296 1 805 214 39 28 chrX 34339032 34339214 -142634926 + L1MC4 LINE L1 7694 7877 -165 2056 101 0 32 chrX 34339215 34339523 -142634617 - AluSg SINE Alu -12 298 1 237 224 0 0 chrX 34339600 34339649 -142634491 + L1MC4 LINE L1 7991 8039 -3 2244 104 0 0 chrX 34339687 34339986 -142634154 - AluSq SINE Alu -14 299 1 1934 146 0 0 chrX 34339996 34340305 -142633835 - AluJb SINE Alu -2 310 2 1463 168 3 70 chrX 34340335 34340663 -142633477 + AluJo SINE Alu 1 306 -6 333 288 196 29 chrX 34340674 34340793 -142633347 + L1M4 LINE L1 2965 3063 -3083 2190 91 0 3 chrX 34340793 34341090 -142633050 + AluSx SINE Alu 5 300 -12 333 288 196 29 chrX 34341090 34341210 -142632930 + L1M4 LINE L1 3063 3244 -2902 420 104 134 0 chrX 34341253 34341320 -142632820 + AluS SINE Alu 2 77 -236 2074 105 0 20 chrX 34341384 34341689 -142632451 - AluSg SINE Alu -11 299 1 926 178 6 0 chrX 34341692 34341866 -142632274 - AluJb SINE Alu -8 304 130 1814 129 13 42 chrX 34341883 34342193 -142631947 + AluSx SINE Alu 1 301 -11 2211 93 0 16 chrX 34342193 34342503 -142631637 + AluSq SINE Alu 1 305 -8 811 137 0 23 chrX 34342520 34342651 -142631489 + AluSg/x SINE Alu 182 309 -3 202 137 0 78 chrX 34343134 34343185 -142630955 + (GGGTG)n Simple_repeat Simple_repeat 5 51 0 1915 91 0 30 chrX 34343436 34343559 -142630581 - AluSx SINE Alu -55 257 132 180 0 0 0 chrX 34343559 34343579 -142630561 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2147 82 0 4 chrX 34343582 34343862 -142630278 - AluSg SINE Alu -31 279 1 1915 91 0 30 chrX 34343862 34343999 -142630141 - AluSx SINE Alu -182 130 1 1311 184 90 4 chrX 34344000 34344266 -142629874 - AluJb SINE Alu -15 297 9 292 43 21 21 chrX 34344329 34344376 -142629764 + (TG)n Simple_repeat Simple_repeat 2 48 0 1544 127 8 8 chrX 34344732 34344977 -142629163 - AluJb SINE Alu -67 245 1 2173 170 33 2 chrX 34344977 34345407 -142628733 - L1MC/D LINE L1 -692 5927 5485 5010 224 45 99 chrX 34345561 34345734 -142628406 - L1MC/D LINE L1 -895 5511 5330 2347 67 0 3 chrX 34345734 34346034 -142628106 + AluSc SINE Alu 1 299 -10 5010 224 45 99 chrX 34346034 34346048 -142628092 - L1MC/D LINE L1 -1076 5330 5317 2201 96 0 0 chrX 34346048 34346340 -142627800 + AluSq SINE Alu 2 293 -20 5010 224 45 99 chrX 34346340 34346837 -142627303 - L1MC/D LINE L1 -1089 5317 4795 1661 159 14 10 chrX 34346837 34347127 -142627013 - AluJb SINE Alu -21 291 1 5010 224 45 99 chrX 34347127 34347376 -142626764 - L1MC/D LINE L1 -1611 4795 4534 1327 209 61 0 chrX 34347376 34347653 -142626487 - AluJo SINE Alu -18 294 1 5010 224 45 99 chrX 34347653 34347890 -142626250 - L1MC/D LINE L1 -1872 4534 4286 1914 129 11 3 chrX 34347890 34348176 -142625964 + AluJb SINE Alu 1 288 -24 5010 224 45 99 chrX 34348176 34348379 -142625761 - L1MC/D LINE L1 -2120 4286 4074 2284 99 0 0 chrX 34348379 34348681 -142625459 - AluSx SINE Alu -10 302 1 5010 224 45 99 chrX 34348681 34348973 -142625167 - L1MC/D LINE L1 -2332 4074 3768 2105 96 0 3 chrX 34348973 34349368 -142624772 - AluSx SINE Alu 0 394 1 5010 224 45 99 chrX 34349368 34349393 -142624747 - L1MC/D LINE L1 -2638 3768 3743 2193 108 0 0 chrX 34349393 34349689 -142624451 + AluSg SINE Alu 1 296 -14 5010 224 45 99 chrX 34349689 34350140 -142624000 - L1MC/D LINE L1 -2663 3743 3478 2194 89 0 0 chrX 34350142 34350423 -142623717 - AluSx SINE Alu -17 295 15 1820 131 11 3 chrX 34350453 34350736 -142623404 - AluJb SINE Alu -13 299 15 1083 222 15 18 chrX 34350747 34351076 -142623064 - L1MC/D LINE L1 -3525 2881 2554 1923 153 0 3 chrX 34351078 34351386 -142622754 - AluJo SINE Alu -5 307 1 969 191 25 50 chrX 34351391 34351674 -142622466 - L1MC/D LINE L1 -3961 2445 2170 2100 94 3 7 chrX 34351676 34351973 -142622167 - AluSq SINE Alu -17 296 1 1712 188 41 6 chrX 34352035 34352355 -142621785 + MER74A LTR ERVL 3 333 -225 2069 116 0 3 chrX 34352390 34352682 -142621458 - AluSg SINE Alu -19 291 1 2004 133 10 7 chrX 34352682 34352990 -142621150 - AluSx SINE Alu -3 309 1 1451 99 5 5 chrX 34353005 34353216 -142620924 - AluSq SINE Alu -14 299 89 213 64 0 64 chrX 34353218 34353265 -142620875 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 772 153 17 17 chrX 34353269 34353446 -142620694 + CT-rich Low_complexity Low_complexity 1 177 0 1685 151 13 32 chrX 34353446 34353757 -142620383 - AluJb SINE Alu -7 305 1 411 145 0 0 chrX 34353757 34353819 -142620321 + MER74A LTR ERVL 476 537 -21 1569 218 24 18 chrX 34353827 34354162 -142619978 - MLT1A1 LTR MaLR 0 365 29 1749 187 86 137 chrX 34354177 34354191 -142619949 - L1MC/D LINE L1 -4202 2204 2191 2233 113 0 0 chrX 34354191 34354502 -142619638 - AluSx SINE Alu -1 311 1 1749 187 86 137 chrX 34354502 34354777 -142619363 - L1MC/D LINE L1 -4215 2191 1903 1834 173 0 3 chrX 34354777 34355090 -142619050 - AluJo SINE Alu 0 312 1 1749 187 86 137 chrX 34355090 34355473 -142618667 - L1MC/D LINE L1 -4503 1903 1582 2166 113 3 0 chrX 34355473 34355784 -142618356 - AluSq SINE Alu 0 313 2 1749 187 86 137 chrX 34355784 34355971 -142618169 - L1MC/D LINE L1 -4824 1582 1387 1720 147 51 56 chrX 34355977 34356352 -142617788 + THE1C LTR MaLR 1 373 -2 1839 103 0 55 chrX 34356353 34356645 -142617495 + AluSx SINE Alu 1 276 -36 308 43 22 0 chrX 34356648 34356694 -142617446 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1295 111 5 0 chrX 34356694 34356883 -142617257 + AluSp SINE Alu 124 313 0 893 160 11 23 chrX 34356894 34357069 -142617071 - L1MC/D LINE L1 -5017 1392 1220 2129 121 0 0 chrX 34357070 34357367 -142616773 - AluSq SINE Alu -16 297 1 600 179 98 0 chrX 34357394 34357517 -142616623 - AluJb SINE Alu -176 136 2 898 107 25 61 chrX 34357521 34357718 -142616422 - L1MC/D LINE L1 -5189 1220 1031 686 93 0 0 chrX 34357741 34357827 -142616313 - U6 snRNA snRNA -21 86 1 552 193 0 0 chrX 34357827 34357936 -142616204 - L1MC/D LINE L1 -5366 1043 935 2255 83 63 109 chrX 34357950 34357977 -142616163 - L1MA8 LINE L1 -5 6286 6259 201 39 0 0 chrX 34357977 34358003 -142616137 + (TA)n Simple_repeat Simple_repeat 1 26 0 2255 83 63 109 chrX 34358003 34358149 -142615991 - L1MA8 LINE L1 -32 6259 6108 1957 133 0 0 chrX 34358149 34358443 -142615697 - AluJb SINE Alu -18 294 1 2255 83 63 109 chrX 34358443 34358475 -142615665 - L1MA8 LINE L1 -183 6108 6076 1616 148 35 11 chrX 34358475 34358759 -142615381 + AluJo SINE Alu 8 298 -14 2255 83 63 109 chrX 34358759 34359008 -142615132 - L1MA8 LINE L1 -215 6076 5851 401 86 0 111 chrX 34359014 34359075 -142615065 - L1MA8 LINE L1 -640 5660 5608 1779 152 0 13 chrX 34359075 34359377 -142614763 - AluJo SINE Alu -14 298 1 401 86 0 111 chrX 34359377 34359396 -142614744 - L1MA8 LINE L1 -692 5608 5589 * 1448 176 40 4 chrX 34359387 34359660 -142614480 - L1MC/D LINE L1 -5451 958 676 482 0 0 17 chrX 34359701 34359760 -142614380 + (TTTC)n Simple_repeat Simple_repeat 1 58 0 991 59 5 65 chrX 34359782 34359968 -142614172 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 1668 159 4 0 chrX 34359968 34360245 -142613895 - AluJo SINE Alu -34 278 1 552 282 29 6 chrX 34360272 34360442 -142613698 - L1MC/D LINE L1 -5816 593 420 * 1989 260 12 76 chrX 34360438 34360952 -142613188 - L1MC/D LINE L1 -5790 619 155 2267 96 3 0 chrX 34360952 34361254 -142612886 - AluSp SINE Alu -10 303 1 1989 260 12 76 chrX 34361254 34361396 -142612744 - L1MC/D LINE L1 -6254 155 5 2231 86 13 0 chrX 34361467 34361640 -142612500 - AluY SINE Alu -6 305 125 216 0 0 0 chrX 34361640 34361664 -142612476 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2231 86 13 0 chrX 34361664 34361791 -142612349 - AluY SINE Alu -186 125 1 2033 135 0 0 chrX 34361791 34362088 -142612052 - AluSq SINE Alu -16 297 1 2322 47 0 10 chrX 34362092 34362389 -142611751 - AluY SINE Alu -17 294 1 910 150 0 0 chrX 34362401 34362534 -142611606 - FLAM_C SINE Alu 0 133 1 1277 130 73 120 chrX 34362720 34363036 -142611104 - AluJb SINE Alu 0 302 2 2191 99 0 0 chrX 34363039 34363332 -142610808 - AluSx SINE Alu -19 293 1 2532 48 0 6 chrX 34363364 34363676 -142610464 + AluY SINE Alu 1 310 -1 2502 122 40 40 chrX 34363682 34363720 -142610420 - MSTA LTR MaLR -3 425 388 2379 79 0 0 chrX 34363720 34364024 -142610116 + AluSc SINE Alu 1 304 -5 2238 67 3 19 chrX 34364024 34364339 -142609801 + AluY SINE Alu 1 311 0 2502 122 40 40 chrX 34364339 34364724 -142609416 - MSTA LTR MaLR -38 390 1 721 156 0 0 chrX 34364728 34364837 -142609303 - FLAM_C SINE Alu -32 111 3 487 199 94 64 chrX 34364842 34365013 -142609127 - MER21B LTR ERV1 -22 841 666 570 134 0 52 chrX 34365014 34365111 -142609029 + MER50 LTR ERV1 2 93 -641 404 164 15 0 chrX 34365121 34365188 -142608952 - MER21B LTR ERV1 -203 660 593 1954 138 10 0 chrX 34365188 34365493 -142608647 - AluSx SINE Alu -4 308 1 629 118 0 0 chrX 34365493 34365578 -142608562 - AluJ/FLAM SINE Alu -219 93 9 1820 144 57 3 chrX 34365583 34365881 -142608259 - MER21B LTR ERV1 -548 315 2 1760 145 32 3 chrX 34365914 34366196 -142607944 + AluJb SINE Alu 1 290 -22 822 199 7 0 chrX 34366272 34366452 -142607688 + FRAM SINE Alu 1 181 0 294 164 15 0 chrX 34366456 34366523 -142607617 + Charlie5 DNA MER1_type 55 122 -2490 1188 157 22 56 chrX 34366601 34366649 -142607491 + Charlie5 DNA MER1_type 2243 2291 -333 1619 193 0 3 chrX 34366649 34366960 -142607180 - AluJo SINE Alu -2 310 1 1188 157 22 56 chrX 34366960 34366971 -142607169 + Charlie5 DNA MER1_type 2291 2301 -323 1820 107 68 4 chrX 34366971 34367252 -142606888 - AluSp SINE Alu -12 301 3 1188 157 22 56 chrX 34367252 34367515 -142606625 + Charlie5 DNA MER1_type 2301 2555 -69 552 165 48 0 chrX 34367562 34367665 -142606475 - LTR65 LTR ERV1 -357 312 205 1903 68 109 0 chrX 34368456 34368722 -142605418 - AluSg SINE Alu -15 295 1 2249 190 24 60 chrX 34368943 34369045 -142605095 - LTR65 LTR ERV1 -20 649 545 487 232 27 9 chrX 34369045 34369157 -142604983 - MER81 DNA DNA 0 114 1 2249 190 24 60 chrX 34369157 34369340 -142604800 - LTR65 LTR ERV1 -124 545 357 2127 97 3 0 chrX 34369340 34369628 -142604512 + AluSx SINE Alu 1 289 -23 2249 190 24 60 chrX 34369628 34369641 -142604499 - LTR65 LTR ERV1 -312 357 345 1772 149 33 13 chrX 34369641 34369942 -142604198 + AluJb SINE Alu 1 307 -5 2249 190 24 60 chrX 34369942 34370140 -142604000 - LTR65 LTR ERV1 -324 345 169 588 174 0 10 chrX 34370142 34370240 -142603900 - MER96B DNA MER1_type? 0 417 321 1442 141 74 19 chrX 34370246 34370515 -142603625 - AluJb SINE Alu -28 284 1 1993 123 0 17 chrX 34370528 34370829 -142603311 - AluSx SINE Alu -16 296 1 201 74 0 0 chrX 34370830 34370857 -142603283 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 1487 190 7 3 chrX 34370857 34371152 -142602988 - AluJb SINE Alu -16 296 1 1862 138 3 26 chrX 34371174 34371478 -142602662 - AluJo SINE Alu -15 297 1 2295 69 23 0 chrX 34371528 34371833 -142602307 + AluSp SINE Alu 1 312 -1 376 232 17 99 chrX 34372771 34372952 -142601188 - L1M4 LINE L1 -2885 3261 3096 213 39 0 0 chrX 34373055 34373081 -142601059 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1764 125 7 4 chrX 34373081 34373360 -142600780 - AluSx SINE Alu -32 280 1 1375 125 62 92 chrX 34373433 34373738 -142600402 + AluJb SINE Alu 1 296 -16 580 230 58 100 chrX 34373738 34373842 -142600298 - L1M4 LINE L1 -1715 4431 4324 2105 105 9 25 chrX 34373842 34374157 -142599983 + AluSg SINE Alu 1 310 0 580 230 58 100 chrX 34374157 34374354 -142599786 - L1M4 LINE L1 -1822 4324 4141 1504 112 48 32 chrX 34374381 34374631 -142599509 - AluSx SINE Alu 0 312 59 427 130 0 0 chrX 34574631 34574700 -142399440 + Alu SINE Alu 234 302 -10 300 116 0 0 chrX 34574706 34574749 -142399391 + L1MB1 LINE L1 6124 6166 -2 1927 136 16 52 chrX 34574752 34574837 -142399303 + L1MB8 LINE L1 5811 5898 -280 1854 110 46 4 chrX 34574837 34575118 -142399022 + AluSx SINE Alu 1 293 -19 1927 136 16 52 chrX 34575118 34575414 -142398726 + L1MB8 LINE L1 5898 6178 0 231 269 0 0 chrX 34575455 34575507 -142398633 + L2 LINE L2 3262 3313 0 376 333 65 27 chrX 34575520 34575706 -142398434 + L1ME LINE L1 4031 4223 -1923 366 288 101 19 chrX 34575921 34575988 -142398152 + L1ME LINE L1 4596 4656 -1490 2179 108 0 10 chrX 34575988 34576294 -142397846 + AluSg SINE Alu 1 303 -7 366 288 101 19 chrX 34576294 34576650 -142397490 + L1ME LINE L1 4656 5054 -1092 516 264 97 23 chrX 34576830 34577129 -142397011 + L1ME LINE L1 5283 5603 -559 419 224 155 6 chrX 34577168 34577329 -142396811 + L1M4 LINE L1 2790 2974 -3172 1465 145 21 55 chrX 34577335 34577624 -142396516 + AluJo SINE Alu 15 293 -19 1286 133 9 5 chrX 34577625 34577835 -142396305 + AluJo SINE Alu 86 296 -16 412 283 44 52 chrX 34577846 34578083 -142396057 + L1M4 LINE L1 2954 3214 -2932 232 293 121 32 chrX 34580063 34580220 -142393920 - L1M4 LINE L1 -3313 2833 2663 188 67 33 0 chrX 34580325 34580355 -142393785 + (GA)n Simple_repeat Simple_repeat 2 32 0 249 253 52 55 chrX 34580555 34580747 -142393393 - L1P5 LINE L1 -726 5430 5243 249 93 0 47 chrX 34580930 34580973 -142393167 + Alu SINE Alu 107 147 -154 1200 126 6 0 chrX 34580986 34581169 -142392971 + AluSg/x SINE Alu 121 304 -8 1561 209 96 96 chrX 34581430 34582037 -142392103 - MER92B LTR ERV1 -29 607 1 1991 121 7 3 chrX 34582302 34582600 -142391540 + AluSx SINE Alu 1 299 -13 2172 98 17 0 chrX 34582616 34582911 -142391229 + AluSx SINE Alu 2 301 -11 581 304 98 63 chrX 34582911 34583199 -142390941 - L1M4 LINE L1 -1534 4612 4302 1469 174 43 4 chrX 34583199 34583475 -142390665 - AluJb SINE Alu -6 306 20 581 304 98 63 chrX 34583475 34583627 -142390513 - L1M4 LINE L1 -1844 4302 4157 937 143 87 41 chrX 34583637 34583673 -142390467 - MER3 DNA MER1_type -4 205 172 1911 150 10 0 chrX 34583673 34583980 -142390160 - AluJb SINE Alu -2 310 1 937 143 87 41 chrX 34583980 34584139 -142390001 - MER3 DNA MER1_type -37 172 1 269 293 10 10 chrX 34584194 34584293 -142389847 - L1P5 LINE L1 -2017 4129 4031 1688 149 53 0 chrX 34584339 34584621 -142389519 - AluJb SINE Alu -11 301 5 2166 117 0 0 chrX 34584631 34584938 -142389202 - AluSx SINE Alu -5 307 1 2321 78 3 0 chrX 34584967 34585261 -142388879 + AluSp SINE Alu 1 295 -18 369 93 0 0 chrX 34585584 34585638 -142388502 + (CA)n Simple_repeat Simple_repeat 1 54 0 685 236 119 118 chrX 34585924 34586411 -142387729 + MLT1G1 LTR MaLR 1 491 -104 1430 183 26 33 chrX 34586411 34586717 -142387423 + AluJo SINE Alu 3 306 -6 685 236 119 118 chrX 34586717 34586823 -142387317 + MLT1G1 LTR MaLR 491 595 0 1396 199 54 7 chrX 34587098 34587394 -142386746 - AluJb SINE Alu -2 310 1 2019 211 65 27 chrX 34587425 34587842 -142386298 - MER77 LTR ERV1 -6 599 100 2388 116 0 23 chrX 34587842 34588187 -142385953 - MER1B DNA MER1_type 0 337 1 2019 211 65 27 chrX 34588187 34588289 -142385851 - MER77 LTR ERV1 -505 100 3 1757 156 7 13 chrX 34588389 34588697 -142385443 - AluJb SINE Alu -6 306 1 2342 87 3 0 chrX 34588796 34589107 -142385033 - AluSx SINE Alu 0 312 1 4209 159 52 14 chrX 34589160 34589845 -142384295 - MER21B LTR ERV1 -113 750 36 2564 116 83 5 chrX 34589845 34590242 -142383898 - MSTA LTR MaLR 0 428 1 4209 159 52 14 chrX 34590242 34590265 -142383875 - MER21B LTR ERV1 -827 36 15 1238 87 46 26 chrX 34590293 34590438 -142383702 - L1MA8 LINE L1 -40 6251 6100 2423 112 21 24 chrX 34590438 34590814 -142383326 - THE1C LTR MaLR 0 375 1 1238 87 46 26 chrX 34590814 34590863 -142383277 - L1MA8 LINE L1 -191 6100 6053 857 221 84 33 chrX 34590872 34591296 -142382844 - MLT1D LTR MaLR -8 497 5 5228 185 33 99 chrX 34591300 34592205 -142381935 - MLT1D-int LTR MaLR -1 1370 597 2037 125 23 0 chrX 34592205 34592510 -142381630 - AluSx SINE Alu 0 312 1 5228 185 33 99 chrX 34592510 34593068 -142381072 - MLT1D-int LTR MaLR -774 597 4 1795 191 153 18 chrX 34593069 34593508 -142380632 - MLT1D LTR MaLR -7 498 1 421 309 79 76 chrX 34593840 34594243 -142379897 + HAL1b LINE L1 -4 255 -1076 497 196 0 0 chrX 34594249 34594341 -142379799 + L1MEc LINE L1 38 129 -6267 1758 141 6 55 chrX 34594341 34594668 -142379472 + AluSx SINE Alu 1 311 -1 1677 135 2 148 chrX 34594675 34594914 -142379226 - LTR8 LTR ERV1 -349 342 183 2051 118 7 7 chrX 34594914 34595211 -142378929 + AluSx SINE Alu 1 297 -15 1677 135 2 148 chrX 34595211 34595371 -142378769 - LTR8 LTR ERV1 -508 183 1 1841 194 19 13 chrX 34595401 34595777 -142378363 + MER68 LTR ERV1 2 423 -182 10561 151 21 20 chrX 34595777 34596077 -142378063 + HERVL68 LTR ERVL 34 332 -2705 2014 121 0 0 chrX 34596077 34596402 -142377738 + AluSx SINE Alu 1 325 0 10561 151 21 20 chrX 34596402 34596743 -142377397 + HERVL68 LTR ERVL 332 671 -2366 2557 140 74 0 chrX 34596743 34597164 -142376976 + LTR47A LTR ERVL 1 452 0 10561 151 21 20 chrX 34597164 34598299 -142375841 + HERVL68 LTR ERVL 671 1814 -1223 2001 113 33 0 chrX 34598299 34598641 -142375499 - AluJb SINE Alu 0 352 1 6854 143 8 7 chrX 34598641 34599733 -142374407 + HERVL68 LTR ERVL 1794 2886 -151 1141 96 25 61 chrX 34599734 34599746 -142374394 - AluJo SINE Alu -14 298 287 369 0 0 0 chrX 34599746 34599787 -142374353 + (TG)n Simple_repeat Simple_repeat 2 42 0 1141 96 25 61 chrX 34599787 34599972 -142374168 - AluJo SINE Alu -25 287 108 2409 91 43 14 chrX 34599974 34600366 -142373774 - MLT2A1 LTR ERVL 0 453 1 703 140 0 0 chrX 34600367 34600474 -142373666 - AluJo SINE Alu -201 111 5 849 130 36 0 chrX 34600478 34600616 -142373524 + HERVL68 LTR ERVL 2884 3026 -11 2269 226 25 27 chrX 34600618 34601176 -142372964 + MER68 LTR ERV1 4 560 -2 2373 81 0 3 chrX 34601270 34601580 -142372560 + AluSx SINE Alu 1 309 -3 2490 202 82 70 chrX 34601588 34601695 -142372445 + L1MC5 LINE L1 6508 6612 -1349 315 0 0 0 chrX 34601695 34601730 -142372410 + (CA)n Simple_repeat Simple_repeat 1 35 0 2490 202 82 70 chrX 34601730 34602528 -142371612 + L1MC5 LINE L1 6612 7429 -532 251 221 76 55 chrX 34602702 34602847 -142371293 + L1ME3A LINE L1 6021 6168 -2 2183 103 3 0 chrX 34602910 34603211 -142370929 + AluSq SINE Alu 1 302 -11 2292 92 9 0 chrX 34603659 34603976 -142370164 - L1MB2 LINE L1 -3 6168 5849 2155 107 10 0 chrX 34603990 34604298 -142369842 - AluSx SINE Alu -1 311 1 765 180 16 0 chrX 34604302 34604430 -142369710 - FLAM_C SINE Alu -3 130 1 264 280 54 21 chrX 34604830 34604923 -142369217 - L1ME LINE L1 -5912 158 63 238 302 0 0 chrX 34604920 34604983 -142369157 - L1M4 LINE L1 -5604 938 876 * 363 301 32 32 chrX 34605558 34605777 -142368363 - L1M4 LINE L1 -6307 235 17 705 100 82 0 chrX 34605834 34605944 -142368196 - FLAM_C SINE Alu -14 119 1 2339 82 0 13 chrX 34610340 34610655 -142363485 - AluSx SINE Alu -1 311 1 800 178 59 30 chrX 34610670 34610839 -142363301 + MER20B DNA MER1_type 1 174 -45 762 153 79 23 chrX 34611284 34611461 -142362679 + L1MCa LINE L1 50 236 -6190 1973 81 0 0 chrX 34611621 34611880 -142362260 - AluSx SINE Alu -5 307 49 2466 128 25 48 chrX 34611892 34612095 -142362045 - L1MB2 LINE L1 -262 5909 5703 1487 192 0 0 chrX 34612095 34612355 -142361785 + AluJo SINE Alu 1 260 -52 2466 128 25 48 chrX 34612355 34612589 -142361551 - L1MB2 LINE L1 -468 5703 5482 187 54 54 0 chrX 34612864 34612901 -142361239 + A-rich Low_complexity Low_complexity 2 40 0 1921 148 0 3 chrX 34612910 34613214 -142360926 + AluJb SINE Alu 1 303 -9 747 240 72 67 chrX 34613215 34613561 -142360579 + L1MA9 LINE L1 5935 6282 -30 2156 128 0 0 chrX 34613579 34613891 -142360249 + AluSx SINE Alu 1 312 0 1194 162 0 15 chrX 34614999 34615203 -142358937 + AluJb SINE Alu 86 286 -26 360 0 0 0 chrX 34615275 34615315 -142358825 + (TA)n Simple_repeat Simple_repeat 2 41 0 2257 96 0 0 chrX 34615315 34615618 -142358522 - AluSx SINE Alu -9 303 1 930 120 0 0 chrX 34615660 34615793 -142358347 - FLAM_C SINE Alu 0 133 1 1126 113 5 0 chrX 34615835 34616029 -142358111 - Charlie5 DNA MER1_type 0 2624 2430 1472 124 8 64 chrX 34616068 34616283 -142357857 + L1M3 LINE L1 5454 5653 -518 1605 156 6 75 chrX 34616283 34616492 -142357648 + AluJb SINE Alu 2 181 -131 2207 91 7 0 chrX 34616492 34616790 -142357350 - AluSx SINE Alu -12 300 1 1605 156 6 75 chrX 34616790 34616914 -142357226 + AluJb SINE Alu 181 312 0 1472 124 8 64 chrX 34616914 34616965 -142357175 + L1M3 LINE L1 5653 5705 -466 1705 181 0 7 chrX 34616969 34617262 -142356878 - AluJb SINE Alu -21 291 1 1403 121 8 54 chrX 34617593 34617675 -142356465 + L1M3 LINE L1 5486 5570 -601 1978 135 0 3 chrX 34617675 34617971 -142356169 + AluSx SINE Alu 6 300 -12 1403 121 8 54 chrX 34617971 34618128 -142356012 + L1M3 LINE L1 5570 5714 -457 720 226 0 0 chrX 34618133 34618257 -142355883 - FRAM SINE Alu -52 124 1 239 186 0 68 chrX 34618262 34618321 -142355819 - L1MA9 LINE L1 -370 5942 5888 * 611 131 83 12 chrX 34618313 34618434 -142355706 + L1MCa LINE L1 1627 2192 -4235 239 237 111 56 chrX 34619286 34619484 -142354656 - L1ME LINE L1 -227 5894 5686 243 185 19 19 chrX 34619529 34619583 -142354557 + GA-rich Low_complexity Low_complexity 3 56 0 2135 100 7 3 chrX 34620945 34621254 -142352886 - AluSx SINE Alu -2 310 1 1142 189 48 2 chrX 34621289 34621576 -142352564 + MER2 DNA MER2_type 1 341 -4 2281 94 3 0 chrX 34621802 34622111 -142352029 + AluSx SINE Alu 1 310 -2 427 114 38 0 chrX 34622524 34622603 -142351537 + CT-rich Low_complexity Low_complexity 2 83 0 1327 163 61 49 chrX 34622614 34622799 -142351341 - AluJo SINE Alu -45 267 77 1775 140 7 40 chrX 34622799 34623099 -142351041 - AluJo SINE Alu -22 290 1 1327 163 61 49 chrX 34623099 34623177 -142350963 - AluJo SINE Alu -235 77 1 224 330 0 11 chrX 34623587 34623678 -142350462 - L2 LINE L2 -665 2649 2560 231 330 11 23 chrX 34623697 34623785 -142350355 + MIR SINE MIR 168 254 -8 1847 147 41 7 chrX 34624642 34624811 -142349329 - AluJb SINE Alu -10 302 117 197 33 33 0 chrX 34624811 34624841 -142349299 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1847 147 41 7 chrX 34624841 34624963 -142349177 - AluJb SINE Alu -195 117 1 1660 157 10 51 chrX 34624997 34625291 -142348849 + AluJo SINE Alu 1 282 -30 227 324 190 47 chrX 34625357 34625668 -142348472 - L2 LINE L2 -341 2973 2708 2642 130 21 58 chrX 34625668 34625965 -142348175 - MLT1C LTR MaLR 0 467 193 2232 114 13 0 chrX 34625965 34626273 -142347867 + AluSx SINE Alu 1 312 0 2642 130 21 58 chrX 34626273 34626460 -142347680 - MLT1C LTR MaLR -274 193 1 227 324 190 47 chrX 34626460 34626531 -142347609 - L2 LINE L2 -606 2708 2648 2352 97 3 0 chrX 34626531 34626829 -142347311 + AluSx SINE Alu 1 299 -13 227 324 190 47 chrX 34626829 34627125 -142347015 - L2 LINE L2 -666 2648 2197 2053 128 0 3 chrX 34627131 34627435 -142346705 + AluJb SINE Alu 3 305 0 2453 98 0 0 chrX 34627560 34627866 -142346274 + AluSq SINE Alu 1 306 -7 2144 122 3 10 chrX 34627866 34628160 -142345980 + AluSg SINE Alu 1 292 -18 437 280 0 9 chrX 34628180 34628287 -142345853 + L2 LINE L2 3187 3292 -21 1978 148 7 3 chrX 34628302 34628592 -142345548 - AluJb SINE Alu -21 291 1 236 173 0 39 chrX 34628827 34628879 -142345261 + Alu SINE Alu 87 136 -166 1507 147 12 114 chrX 34628879 34629212 -142344928 + AluJo SINE Alu 2 300 -2 1727 217 24 49 chrX 34629339 34629718 -142344422 + L1ME1 LINE L1 5682 6048 -118 2584 80 3 0 chrX 34629718 34630029 -142344111 - AluSq SINE Alu -1 312 1 1727 217 24 49 chrX 34630029 34630143 -142343997 + L1ME1 LINE L1 6048 6163 -3 554 320 23 23 chrX 34630315 34630618 -142343522 + L1MD1 LINE L1 4068 4370 -1776 1978 146 10 3 chrX 34630618 34630913 -142343227 + AluJo SINE Alu 1 297 -15 764 146 15 0 chrX 34630913 34631043 -142343097 + L1MC1 LINE L1 5966 6097 -236 698 133 0 0 chrX 34631049 34631162 -142342978 + L1MD1 LINE L1 4748 4860 -1286 1250 174 9 26 chrX 34631165 34631395 -142342745 - AluJo SINE Alu 0 312 87 1281 167 0 0 chrX 34631399 34631597 -142342543 - AluJb SINE Alu -33 279 82 4586 172 67 60 chrX 34631597 34632140 -142342000 + L1MD1 LINE L1 4847 5385 -857 2245 122 0 22 chrX 34632140 34632459 -142341681 + AluSx SINE Alu 1 312 0 4586 172 67 60 chrX 34632459 34632884 -142341256 + L1MD1 LINE L1 5385 5805 -437 2220 121 0 13 chrX 34632884 34633190 -142340950 + AluJb SINE Alu 1 302 -10 4586 172 67 60 chrX 34633190 34633595 -142340545 + L1MD1 LINE L1 5805 6242 0 446 280 238 14 chrX 34633701 34633915 -142340225 + MIR SINE MIR 1 262 0 371 168 17 0 chrX 34634148 34634293 -142339847 + L1MC4a LINE L1 6939 7222 -586 398 71 107 0 chrX 34634297 34634381 -142339759 - Charlie5 DNA MER1_type -118 2494 2402 1059 99 0 0 chrX 34634382 34634513 -142339627 + AluSq/x SINE Alu 1 131 -182 2142 82 0 0 chrX 34634521 34634778 -142339362 + AluSc SINE Alu 1 257 -52 2006 142 127 21 chrX 34634849 34635236 -142338904 + MSTA LTR MaLR 1 428 0 909 166 14 0 chrX 34635238 34635383 -142338757 - AluSg/x SINE Alu -32 278 132 28 0 0 0 chrX 34635600 34635628 -142338512 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 34635668 34635690 -142338450 + AT_rich Low_complexity Low_complexity 1 22 0 1961 133 0 24 chrX 34635690 34635983 -142338157 - AluSx SINE Alu -26 286 1 317 285 97 48 chrX 34636093 34636279 -142337861 - L1ME4a LINE L1 -176 5945 5751 21 0 0 0 chrX 34636452 34636473 -142337667 + AT_rich Low_complexity Low_complexity 1 21 0 1556 124 3 133 chrX 34636475 34636844 -142337296 + AluJo SINE Alu 1 302 0 919 150 13 13 chrX 34636947 34637100 -142337040 - AluSg/x SINE Alu -16 294 142 363 117 2 2 chrX 34637100 34637164 -142336976 - Alu SINE Alu -244 55 1 2032 107 76 0 chrX 34637934 34638223 -142335917 + AluSq SINE Alu 1 311 -2 2295 99 0 0 chrX 34639070 34639382 -142334758 + AluSx SINE Alu 2 313 0 2184 100 4 0 chrX 34639382 34639689 -142334451 + AluSg SINE Alu 1 308 0 436 160 75 0 chrX 34639693 34639787 -142334353 - L1MC4 LINE L1 -3 8039 7939 1760 160 17 3 chrX 34639795 34640082 -142334058 - AluJo SINE Alu -21 291 1 779 144 25 6 chrX 34640157 34640317 -142333823 + L1MC2 LINE L1 5814 5976 -368 945 142 8 0 chrX 34640317 34640451 -142333689 + AluJo SINE Alu 1 135 -177 235 258 75 0 chrX 34640486 34640579 -142333561 + Zaphod DNA AcHobo 3931 4030 -1 2180 80 0 73 chrX 34640596 34640910 -142333230 + AluSg SINE Alu 1 291 -19 466 312 51 45 chrX 34640931 34641141 -142332999 + L1MC/D LINE L1 4695 4909 -1237 1982 165 0 0 chrX 34641141 34641438 -142332702 + AluJo SINE Alu 1 297 -15 466 312 51 45 chrX 34641438 34641560 -142332580 + L1MC/D LINE L1 4909 5029 -1117 1961 181 0 0 chrX 34641560 34641870 -142332270 + AluJb SINE Alu 1 310 -2 248 313 0 0 chrX 34641969 34642065 -142332075 + L1MC/D LINE L1 5348 5443 -799 2344 89 0 0 chrX 34642075 34642366 -142331774 + AluSc SINE Alu 1 291 -18 2440 83 7 0 chrX 34642748 34643049 -142331091 - AluSx SINE Alu -9 303 1 1236 289 54 5 chrX 34643168 34643576 -142330564 + LTR16A LTR ERVL 16 443 -7 2262 84 0 0 chrX 34643576 34643850 -142330290 + AluSx SINE Alu 29 302 -10 1886 150 0 20 chrX 34643972 34644265 -142329875 + AluJo SINE Alu 1 287 -25 21 36 0 0 chrX 34644289 34644317 -142329823 + AT_rich Low_complexity Low_complexity 1 28 0 2426 99 0 0 chrX 34644562 34644865 -142329275 + AluSx SINE Alu 1 303 -9 2504 74 3 0 chrX 34645313 34645609 -142328531 + AluSq SINE Alu 1 297 -16 1849 143 4 0 chrX 34645849 34646145 -142327995 - AluJo SINE Alu 0 307 11 1307 221 86 35 chrX 34646180 34646551 -142327589 - MLT1B LTR MaLR 0 390 1 2502 84 0 0 chrX 34646759 34647067 -142327073 + AluSg SINE Alu 2 309 -1 1950 88 113 7 chrX 34647327 34647601 -142326539 + AluSg1 SINE Alu 1 303 -6 1882 161 0 19 chrX 34647615 34647925 -142326215 + AluJo SINE Alu 1 304 -8 1123 241 0 37 chrX 34648015 34648285 -142325855 + L1MEc LINE L1 37 296 -6100 395 248 64 0 chrX 34648256 34648381 -142325759 + L1MD2 LINE L1 6238 6370 -58 * 852 134 55 0 chrX 34648415 34648542 -142325598 - AluJb SINE Alu -32 280 147 756 221 94 76 chrX 34648544 34648716 -142325424 + L1MEc LINE L1 2354 2521 -3694 2533 90 0 0 chrX 34648716 34649027 -142325113 + AluSx SINE Alu 1 311 -1 756 221 94 76 chrX 34649027 34649184 -142324956 + L1MEc LINE L1 2521 2689 -3526 1129 188 19 0 chrX 34649185 34649393 -142324747 - MLT1B LTR MaLR 0 390 179 1566 181 30 33 chrX 34649403 34649707 -142324433 - AluJo SINE Alu -5 307 5 1100 139 36 0 chrX 34649723 34649889 -142324251 - AluSp SINE Alu -5 308 137 877 139 61 12 chrX 34649891 34650056 -142324084 - MLT1B LTR MaLR -217 173 1 209 383 28 0 chrX 34650303 34650410 -142323730 - MIR SINE MIR -3 259 150 208 247 62 62 chrX 34650465 34650546 -142323594 - MIR SINE MIR -124 138 58 24 53 0 0 chrX 34650799 34650837 -142323303 + AT_rich Low_complexity Low_complexity 1 38 0 2140 61 8 8 chrX 34651364 34651625 -142322515 - AluY SINE Alu -15 296 36 2161 97 13 7 chrX 34651708 34652018 -142322122 + AluSx SINE Alu 1 312 0 927 147 98 0 chrX 34653134 34653297 -142320843 + AluJb SINE Alu 118 296 -16 1270 213 134 50 chrX 34653862 34653925 -142320215 - L1ME2 LINE L1 -3 6163 6107 2092 149 3 3 chrX 34653925 34654234 -142319906 + AluJb SINE Alu 1 309 -3 1270 213 134 50 chrX 34654234 34654631 -142319509 - L1ME2 LINE L1 -59 6107 5664 370 208 32 8 chrX 34654652 34654804 -142319336 - MER63A DNA MER1_type -26 184 1 1178 159 5 19 chrX 34654804 34655018 -142319122 - L1ME2 LINE L1 -496 5670 5460 665 149 158 0 chrX 34655021 34655135 -142319005 + FLAM_C SINE Alu 2 133 0 2464 100 0 0 chrX 34655184 34655515 -142318625 + AluSx SINE Alu 1 331 0 3156 138 86 27 chrX 34655734 34655811 -142318329 - MER67C LTR ERV1 0 710 639 2156 104 6 47 chrX 34655811 34656129 -142318011 - AluSx SINE Alu -6 306 2 3156 138 86 27 chrX 34656129 34656717 -142317423 - MER67C LTR ERV1 -71 639 6 190 280 40 0 chrX 34657912 34657962 -142316178 - L2 LINE L2 -3250 64 13 2195 89 0 4 chrX 34658407 34658687 -142315453 + AluSq SINE Alu 35 313 0 273 267 75 17 chrX 34658862 34658982 -142315158 - L2 LINE L2 -531 2783 2657 4513 142 38 0 chrX 34659618 34660321 -142313819 - MER44D DNA MER2_type -3 602 1 468 254 71 0 chrX 34660734 34660860 -142313280 + MIR SINE MIR 68 202 -60 204 209 0 23 chrX 34661602 34661645 -142312495 - L2 LINE L2 0 3313 3272 814 221 0 6 chrX 34661661 34661824 -142312316 + MIR SINE MIR 84 245 -17 446 231 23 0 chrX 34661835 34661965 -142312175 + MER20B DNA MER1_type 503 635 -148 309 216 24 32 chrX 34661966 34662091 -142312049 + (TTATA)n Simple_repeat Simple_repeat 5 128 0 308 172 141 0 chrX 34662124 34662223 -142311917 + MER20B DNA MER1_type 634 746 -37 27 0 0 0 chrX 34662352 34662379 -142311761 + AT_rich Low_complexity Low_complexity 1 27 0 851 246 182 14 chrX 34662388 34662685 -142311455 + L2 LINE L2 2967 3313 0 483 275 74 0 chrX 34664271 34664420 -142309720 - MIR SINE MIR -95 167 8 288 0 0 0 chrX 34667282 34667314 -142306826 + (TG)n Simple_repeat Simple_repeat 2 33 0 324 0 0 0 chrX 34667384 34667420 -142306720 + (TG)n Simple_repeat Simple_repeat 2 37 0 214 259 0 17 chrX 34669174 34669232 -142304908 + GA-rich Low_complexity Low_complexity 2 58 0 1686 184 72 6 chrX 34671632 34671952 -142302188 + MER58B DNA MER1_type 1 341 0 451 193 0 0 chrX 34673021 34673109 -142301031 + L1MB8 LINE L1 6091 6178 0 556 78 39 0 chrX 34673436 34673513 -142300627 - MADE1 DNA Mariner 0 80 1 280 264 79 50 chrX 34675484 34675624 -142298516 + MIR SINE MIR 9 152 -110 583 302 0 34 chrX 34676075 34676254 -142297886 + MIR SINE MIR 90 262 0 187 163 0 47 chrX 34676314 34676357 -142297783 + MIR SINE MIR 182 222 -40 984 103 0 22 chrX 34676358 34676494 -142297646 - FLAM_C SINE Alu 0 133 1 2221 91 0 0 chrX 34676520 34676816 -142297324 + AluSq SINE Alu 1 296 -17 2048 93 17 7 chrX 34676825 34677116 -142297024 + AluSx SINE Alu 1 294 -18 1060 106 0 0 chrX 34677116 34677258 -142296882 - L1PB4 LINE L1 -14 6142 6001 182 293 0 0 chrX 34677258 34677299 -142296841 + MIR SINE MIR 213 253 -9 208 284 108 0 chrX 34677367 34677441 -142296699 + MIR SINE MIR 169 250 -12 691 263 110 10 chrX 34677746 34677955 -142296185 + MIR SINE MIR 30 259 -3 491 267 9 0 chrX 34677967 34678083 -142296057 + MIR SINE MIR 18 134 -128 225 171 0 0 chrX 34678195 34678230 -142295910 + MIR SINE MIR 219 253 -9 206 233 0 55 chrX 34678380 34678453 -142295687 + G-rich Low_complexity Low_complexity 2 70 0 698 281 101 0 chrX 34679800 34680017 -142294123 + L2 LINE L2 2848 3086 -227 2412 80 3 242 chrX 34680035 34680672 -142293468 - MER31A LTR ERV1 0 485 1 803 237 34 19 chrX 34680676 34680883 -142293257 + L2 LINE L2 3103 3312 -1 207 225 28 56 chrX 34680868 34680939 -142293201 + MIR SINE MIR 178 246 -16 * 207 0 0 0 chrX 34681027 34681050 -142293090 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1791 128 21 3 chrX 34685201 34685483 -142288657 + AluSg SINE Alu 11 297 -13 2213 69 20 30 chrX 34685483 34685788 -142288352 + AluY SINE Alu 1 302 -9 902 306 22 0 chrX 34685788 34686020 -142288120 + MIR SINE MIR 24 260 -2 1763 146 29 0 chrX 34687057 34687356 -142286784 - AluJb SINE Alu 0 307 1 2274 84 0 0 chrX 34687610 34687906 -142286234 + AluSx SINE Alu 1 296 -16 350 359 13 38 chrX 34688059 34688218 -142285922 - L1M4 LINE L1 -1235 4911 4757 1406 196 29 21 chrX 34688229 34688548 -142285592 + AluJo SINE Alu 1 321 0 568 276 49 32 chrX 34688596 34689040 -142285100 - L1 LINE L1 -1419 4727 4284 1893 131 35 0 chrX 34689042 34689213 -142284927 - AluJo SINE Alu -8 304 117 188 33 0 33 chrX 34689213 34689243 -142284897 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1893 131 35 0 chrX 34689243 34689361 -142284779 - AluJo SINE Alu -195 117 5 451 300 92 24 chrX 34689365 34689444 -142284696 - L1 LINE L1 -2370 3776 3704 2095 118 3 0 chrX 34689444 34689740 -142284400 - AluSx SINE Alu -15 297 1 451 300 92 24 chrX 34689740 34690040 -142284100 - L1 LINE L1 -2442 3704 3371 304 167 77 0 chrX 34690034 34690112 -142284028 + L1MC4a LINE L1 6095 6178 -1630 * 1805 151 0 17 chrX 34690122 34690421 -142283719 + AluJb SINE Alu 3 296 -16 2085 121 6 10 chrX 34690421 34690734 -142283406 + AluSx SINE Alu 1 312 0 2683 171 35 119 chrX 34690734 34690887 -142283253 + MER21B LTR ERV1 213 377 -486 2312 87 3 0 chrX 34690887 34691198 -142282942 - AluSp SINE Alu -1 312 1 2683 171 35 119 chrX 34691198 34691733 -142282407 + MER21B LTR ERV1 377 789 -74 592 223 223 15 chrX 34691779 34691981 -142282159 + L1MC4 LINE L1 6636 6879 -1163 6815 214 50 33 chrX 34691981 34693223 -142280917 + L1M4 LINE L1 1 1219 -5425 2253 98 0 3 chrX 34693223 34693528 -142280612 + AluSq SINE Alu 1 304 -9 6815 214 50 33 chrX 34693528 34694586 -142279554 + L1M4 LINE L1 1219 2257 -4387 1659 167 13 20 chrX 34694586 34694717 -142279423 + AluJb SINE Alu 1 131 -181 2013 110 0 3 chrX 34694717 34695041 -142279099 + AluSg SINE Alu 1 323 0 1659 167 13 20 chrX 34695041 34695207 -142278933 + AluJb SINE Alu 131 297 -15 6815 214 50 33 chrX 34695207 34695426 -142278714 + L1M4 LINE L1 2257 2471 -4173 3441 117 0 36 chrX 34695426 34695958 -142278182 - MER75 DNA T2_type 0 514 2 6815 214 50 33 chrX 34695958 34696374 -142277766 + L1M4 LINE L1 2471 2878 -3766 1480 162 40 37 chrX 34696374 34696670 -142277470 - AluJb SINE Alu -15 297 1 6815 214 50 33 chrX 34696670 34697646 -142276494 + L1M4 LINE L1 2878 4048 -2596 912 144 0 0 chrX 34697646 34697778 -142276362 + FLAM_C SINE Alu 1 132 -1 6815 214 50 33 chrX 34697778 34698232 -142275908 + L1M4 LINE L1 4048 4492 -2152 1073 245 0 16 chrX 34698239 34698484 -142275656 - MIR SINE MIR -21 241 1 2071 78 57 0 chrX 34698549 34698830 -142275310 + AluSc SINE Alu 1 297 -12 24 77 0 0 chrX 34699147 34699199 -142274941 + AT_rich Low_complexity Low_complexity 1 52 0 31 18 0 53 chrX 34699353 34699382 -142274758 + AT_rich Low_complexity Low_complexity 1 27 -27 1584 146 0 0 chrX 34699382 34699622 -142274518 - AluJo SINE Alu -26 286 47 31 18 0 53 chrX 34699622 34699649 -142274491 + AT_rich Low_complexity Low_complexity 27 54 0 26 82 0 0 chrX 34700017 34700078 -142274062 + AT_rich Low_complexity Low_complexity 1 61 0 500 73 0 0 chrX 34700078 34700146 -142273994 - AluSp/q SINE Alu -12 301 234 2307 91 0 3 chrX 34750294 34750580 -142223560 - AluSp SINE Alu -28 285 1 2077 113 0 0 chrX 34750656 34750922 -142223218 - AluSg SINE Alu -44 266 1 827 277 61 29 chrX 34752075 34752265 -142221875 + L2 LINE L2 2926 3108 -205 2125 120 30 0 chrX 34752265 34752564 -142221576 - AluSq SINE Alu -5 308 1 827 277 61 29 chrX 34752564 34752748 -142221392 + L2 LINE L2 3108 3312 -1 209 320 0 0 chrX 34752758 34752808 -142221332 + L2 LINE L2 3221 3270 -2 1877 163 0 17 chrX 34752813 34753102 -142221038 + AluJb SINE Alu 1 284 -28 198 0 0 0 chrX 34753102 34753124 -142221016 + (TA)n Simple_repeat Simple_repeat 2 23 0 1697 149 6 68 chrX 34753967 34754121 -142220019 + AluJo SINE Alu 1 126 -186 2120 122 7 10 chrX 34754121 34754424 -142219716 + AluSq SINE Alu 1 302 -11 1697 149 6 68 chrX 34754424 34754591 -142219549 + AluJo SINE Alu 126 302 -10 823 35 35 0 chrX 34754592 34754705 -142219435 + (GGAA)n Simple_repeat Simple_repeat 4 120 0 327 25 0 0 chrX 34755254 34755294 -142218846 + (CA)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chrX 34755377 34755411 -142218729 + (CA)n Simple_repeat Simple_repeat 2 35 0 1098 286 58 3 chrX 34755613 34755959 -142218181 + LTR16A LTR ERVL 86 450 0 412 289 10 0 chrX 34755994 34756098 -142218042 + HERV16 LTR ERVL 42 146 -4850 691 219 43 12 chrX 34756101 34756265 -142217875 + HERVL LTR ERVL 3087 3255 -2399 2298 301 89 23 chrX 34756438 34757350 -142216790 + HERVL LTR ERVL 346 1317 -3679 * 7032 324 61 32 chrX 34757348 34759222 -142214918 + HERVL LTR ERVL 2070 4079 -1685 2538 75 7 0 chrX 34759222 34759528 -142214612 + AluSx SINE Alu 1 308 -4 7032 324 61 32 chrX 34759528 34760869 -142213271 + HERVL LTR ERVL 4079 5379 -385 1382 239 38 21 chrX 34761054 34761426 -142212714 + LTR16A LTR ERVL 59 436 -14 427 192 39 0 chrX 34761627 34761731 -142212409 + MER112 DNA MER1_type 65 172 -88 2297 86 45 0 chrX 34761996 34762286 -142211854 + AluSg SINE Alu 1 303 -7 224 371 11 6 chrX 34766940 34767118 -142207022 + (CA)n Simple_repeat Simple_repeat 2 180 0 370 286 102 0 chrX 34767519 34767666 -142206474 - MIR SINE MIR -12 250 89 207 217 22 0 chrX 34767893 34767939 -142206201 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 384 270 117 0 chrX 34767959 34768096 -142206044 + MIR SINE MIR 19 171 -91 533 208 87 13 chrX 34769409 34769558 -142204582 + MIR SINE MIR 101 260 -2 193 227 23 0 chrX 34769866 34769910 -142204230 + L2 LINE L2 3228 3272 0 181 205 103 0 chrX 34770866 34770905 -142203235 - L2 LINE L2 -4 3309 3267 1237 117 0 17 chrX 34770914 34771093 -142203047 - FRAM SINE Alu 0 176 1 956 189 24 61 chrX 34771094 34771306 -142202834 + MIR SINE MIR 59 262 0 436 239 203 20 chrX 34774111 34774362 -142199778 + L2 LINE L2 2565 2861 -453 1309 145 18 27 chrX 34775545 34775766 -142198374 + MER20 DNA MER1_type 1 219 0 190 267 53 67 chrX 34776403 34776478 -142197662 + L2 LINE L2 3220 3293 -20 463 234 0 88 chrX 34776529 34776666 -142197474 + MIR SINE MIR 69 193 -69 406 232 18 101 chrX 34776958 34777069 -142197071 + MIR SINE MIR 89 183 -79 2282 107 0 0 chrX 34777069 34777367 -142196773 - AluSx SINE Alu -14 298 1 406 232 18 101 chrX 34777367 34777423 -142196717 + MIR SINE MIR 183 242 -20 238 156 89 0 chrX 34777392 34777437 -142196703 + L2 LINE L2 3216 3264 -8 * 386 255 102 10 chrX 34777435 34777533 -142196607 - L2 LINE L2 -4 3309 3203 1772 161 13 17 chrX 34777627 34777926 -142196214 - AluJo SINE Alu -9 303 6 201 94 0 0 chrX 34777931 34777963 -142196177 + (T)n Simple_repeat Simple_repeat 1 32 0 2517 93 0 0 chrX 34778336 34778647 -142195493 + AluSx SINE Alu 1 311 -1 536 244 58 17 chrX 34778860 34779032 -142195108 + L2 LINE L2 3135 3313 0 * 581 283 39 71 chrX 34778999 34779310 -142194830 - L2 LINE L2 -983 2331 2031 1670 183 20 23 chrX 34779431 34779737 -142194403 - AluJb SINE Alu -5 307 3 1355 201 90 4 chrX 34779741 34780019 -142194121 - AluJo SINE Alu -10 302 1 906 203 5 21 chrX 34784823 34785015 -142189125 + MER5A DNA MER1_type 1 189 0 288 266 32 0 chrX 34788021 34788115 -142186025 + MLT1E2-int LTR MaLR 1275 1371 0 2574 187 77 35 chrX 34788115 34788713 -142185427 + MLT1E2 LTR MaLR 1 623 -3 187 376 111 0 chrX 34788784 34788901 -142185239 + L2 LINE L2 2921 3050 -263 2257 106 0 38 chrX 34788957 34789277 -142184863 - AluSx SINE Alu -4 308 1 269 216 0 0 chrX 34789304 34789355 -142184785 - MIR SINE MIR -3 259 209 759 213 0 44 chrX 34789362 34789461 -142184679 + MIR SINE MIR 2 93 -169 907 152 0 0 chrX 34789461 34789593 -142184547 - FLAM_C SINE Alu 0 133 2 759 213 0 44 chrX 34789593 34789653 -142184487 + MIR SINE MIR 93 154 -108 265 220 51 0 chrX 34789655 34789714 -142184426 + MIR SINE MIR 128 189 -73 1271 223 91 7 chrX 34789763 34790072 -142184068 + MER46C DNA MER2_type 4 338 0 515 306 65 11 chrX 34790096 34790282 -142183858 - MIR SINE MIR -63 199 4 1046 286 150 10 chrX 34790714 34791588 -142182552 - L2 LINE L2 -2 3311 2313 768 206 38 12 chrX 34791675 34791835 -142182305 - MIR SINE MIR -66 196 33 501 275 83 10 chrX 34791863 34792056 -142182084 - L2 LINE L2 -184 3129 2923 182 323 108 0 chrX 34792053 34792146 -142181994 + L2 LINE L2 2875 2977 -336 * 456 169 28 164 chrX 34792284 34792461 -142181679 + MIR SINE MIR 60 212 -50 609 93 0 41 chrX 34792689 34792786 -142181354 - FLAM_A SINE Alu -8 134 42 1227 244 92 55 chrX 34793176 34793532 -142180608 + L2 LINE L2 2804 3184 -129 2243 110 3 3 chrX 34793532 34793833 -142180307 - AluSx SINE Alu -11 301 1 1227 244 92 55 chrX 34793833 34793963 -142180177 + L2 LINE L2 3184 3308 -5 685 274 105 20 chrX 34794044 34794292 -142179848 - L2 LINE L2 0 3313 3045 874 131 0 29 chrX 34794501 34794638 -142179502 - FLAM_A SINE Alu 0 133 1 635 268 78 10 chrX 34794893 34795098 -142179042 - L2 LINE L2 -272 3041 2823 362 214 69 76 chrX 34795100 34795231 -142178909 - MIR SINE MIR -54 208 79 227 287 104 43 chrX 34795275 34795390 -142178750 - L2 LINE L2 -341 2972 2851 513 277 189 6 chrX 34795416 34795575 -142178565 + MIR SINE MIR 75 262 0 190 75 75 0 chrX 34796473 34796513 -142177627 + G-rich Low_complexity Low_complexity 6 48 0 192 179 0 0 chrX 34796890 34796929 -142177211 + (CGG)n Simple_repeat Simple_repeat 2 40 0 1553 245 41 13 chrX 34798658 34799228 -142174912 - L2 LINE L2 -1 3312 2722 246 259 118 12 chrX 34799230 34799315 -142174825 + MLT1K LTR MaLR 495 588 0 270 348 137 2 chrX 34799318 34799565 -142174575 - L2 LINE L2 -257 3056 2765 1100 211 87 0 chrX 34799671 34799936 -142174204 + L2 LINE L2 2213 2500 -814 878 172 59 11 chrX 34800000 34800186 -142173954 + L2 LINE L2 3119 3313 0 232 242 167 40 chrX 34800191 34800389 -142173751 + L1MC4a LINE L1 6714 6936 -872 2431 74 0 3 chrX 34800580 34800877 -142173263 - AluSg SINE Alu -14 296 1 2264 103 3 0 chrX 34801370 34801661 -142172479 + AluSq SINE Alu 1 292 -21 414 289 188 10 chrX 34801988 34802196 -142171944 + L2 LINE L2 2855 3099 -214 1549 99 45 9 chrX 34802215 34802437 -142171703 - MER30 DNA MER1_type 0 230 1 1106 296 72 22 chrX 34802541 34802556 -142171584 - L2 LINE L2 -9 3304 3291 1068 179 12 0 chrX 34802556 34802724 -142171416 + FAM SINE Alu 1 170 -5 1106 296 72 22 chrX 34802724 34803167 -142170973 - L2 LINE L2 -22 3291 2823 554 192 83 17 chrX 34803245 34803365 -142170775 + L2 LINE L2 3184 3311 -2 407 234 75 154 chrX 34803695 34803896 -142170244 + L2 LINE L2 3128 3312 -1 861 219 67 22 chrX 34804366 34804590 -142169550 + MIR SINE MIR 29 262 0 501 312 30 34 chrX 34804741 34804978 -142169162 - MIR SINE MIR -11 251 16 1896 168 13 10 chrX 34806478 34806843 -142167297 - AluJb SINE Alu 0 366 1 251 168 124 124 chrX 34807149 34807222 -142166918 - L1MC4 LINE L1 -2 8040 7965 1778 154 30 23 chrX 34807222 34807527 -142166613 - AluJb SINE Alu -5 307 1 251 168 124 124 chrX 34807527 34807566 -142166574 - L1MC4 LINE L1 -76 7966 7928 488 256 31 26 chrX 34807582 34807777 -142166363 - L1ME LINE L1 -298 6634 6439 1997 147 0 10 chrX 34807783 34808076 -142166064 - AluSx SINE Alu -22 290 1 1545 185 61 27 chrX 34808172 34808502 -142165638 + MER58B DNA MER1_type 1 341 0 1254 214 34 44 chrX 34808808 34809236 -142164904 - L1ME LINE L1 -743 6214 5809 1918 161 36 34 chrX 34809238 34809360 -142164780 - L1MB7 LINE L1 0 6184 6064 2002 142 3 19 chrX 34809360 34809670 -142164470 - AluJb SINE Alu -6 306 2 1918 161 36 34 chrX 34809670 34809964 -142164176 - L1MB7 LINE L1 -120 6064 5767 3849 175 49 31 chrX 34809967 34810518 -142163622 - L1ME LINE L1 -4246 2711 2172 2162 118 20 3 chrX 34810518 34810815 -142163325 + AluSx SINE Alu 1 302 -10 3849 175 49 31 chrX 34810815 34811204 -142162936 - L1ME LINE L1 -4785 2172 1750 2127 163 94 85 chrX 34811204 34811715 -142162425 + LTR64 LTR ERVK 1 519 -39 1904 150 17 13 chrX 34811715 34812015 -142162125 + AluJb SINE Alu 1 301 -11 2127 163 94 85 chrX 34812015 34812056 -142162084 + LTR64 LTR ERVK 519 558 0 3849 175 49 31 chrX 34812056 34812086 -142162054 - L1ME LINE L1 -5207 1750 1722 622 167 33 17 chrX 34812090 34812210 -142161930 - MSTC LTR MaLR -306 122 1 233 232 14 29 chrX 34812272 34812341 -142161799 - L1ME LINE L1 -5685 1174 1107 2199 124 0 3 chrX 34812443 34812749 -142161391 - AluSx SINE Alu -7 305 1 291 104 0 0 chrX 34812760 34812808 -142161332 + (TTTTG)n Simple_repeat Simple_repeat 1 48 0 705 78 0 0 chrX 34812817 34812907 -142161233 - AluSg/x SINE Alu -44 268 179 288 243 65 65 chrX 34813023 34813130 -142161010 - L1ME LINE L1 -6594 265 159 4585 84 17 3 chrX 34813186 34813829 -142160311 - L1MA3 LINE L1 -1 6304 5653 1163 181 0 0 chrX 34813840 34814022 -142160118 - AluJb SINE Alu -6 306 125 367 21 113 0 chrX 34814022 34814119 -142160021 + (TA)n Simple_repeat Simple_repeat 2 109 0 322 236 91 27 chrX 34814120 34814230 -142159910 - L1MC4 LINE L1 -1339 6703 6587 2238 111 24 0 chrX 34814235 34814615 -142159525 - L1 LINE L1 -1515 6050 5662 894 206 0 5 chrX 34814800 34814989 -142159151 + L1MB7 LINE L1 5920 6107 -77 1043 92 0 21 chrX 34815006 34815147 -142158993 + AluJb SINE Alu 1 138 -174 293 115 98 0 chrX 34815149 34815210 -142158930 + AluS SINE Alu 231 297 -3 7990 13 2 0 chrX 34815583 34816769 -142157371 - L1PA3 LINE L1 0 6155 4970 2414 128 3 5 chrX 34816769 34817143 -142156997 - L1 LINE L1 -1892 5673 5299 1517 95 5 3 chrX 34817145 34817505 -142156635 - L1 LINE L1 -4265 3300 2803 * 13188 124 12 0 chrX 34817502 34819445 -142154695 - L1 LINE L1 -5119 2446 480 4730 81 0 2 chrX 34819451 34819482 -142154658 - L1PA8A LINE L1 0 6131 5528 4735 63 0 0 chrX 34819482 34820056 -142154084 - L1PA8A LINE L1 -30 6101 5528 4050 76 9 0 chrX 34820053 34820745 -142153395 + L1PA8A LINE L1 4826 5524 -607 * 3017 162 19 2 chrX 34820739 34821208 -142152932 - L1 LINE L1 -7073 492 16 * 427 254 41 6 chrX 34821194 34821363 -142152777 - L1M4 LINE L1 -6355 187 13 * 2277 95 0 0 chrX 34821462 34821776 -142152364 - AluSx SINE Alu 0 314 1 250 155 0 42 chrX 34821776 34821847 -142152293 - L1M LINE L1 -850 5330 5263 262 297 47 0 chrX 34821874 34821938 -142152202 - MIR SINE MIR -194 68 2 2366 102 13 58 chrX 34822275 34822287 -142151853 + THE1C LTR MaLR 1 12 -363 4391 99 27 2 chrX 34822287 34822851 -142151289 + LTR19B LTR ERV1 1 578 -2 2366 102 13 58 chrX 34822851 34823231 -142150909 + THE1C LTR MaLR 12 375 0 1060 180 0 0 chrX 34823521 34823699 -142150441 - AluJb SINE Alu -6 306 129 1649 185 10 27 chrX 34823795 34824087 -142150053 - AluJo SINE Alu -25 287 1 224 246 0 29 chrX 34824795 34824864 -142149276 + CT-rich Low_complexity Low_complexity 3 69 0 811 226 96 5 chrX 34824922 34825130 -142149010 - MIR SINE MIR -30 232 6 * 3220 275 73 43 chrX 34825128 34825897 -142148243 - L2 LINE L2 -19 3294 2550 1849 160 0 0 chrX 34825897 34826179 -142147961 + AluJb SINE Alu 1 282 -30 3220 275 73 43 chrX 34826179 34826860 -142147280 - L2 LINE L2 -763 2550 1782 234 267 57 9 chrX 34826865 34826957 -142147183 - L1 LINE L1 -3783 2363 2264 2015 140 3 3 chrX 34826957 34827265 -142146875 - AluSx SINE Alu -4 308 1 234 267 57 9 chrX 34827265 34827277 -142146863 - L1 LINE L1 -3882 2264 2254 402 36 0 0 chrX 34827285 34827341 -142146799 - L1MB4 LINE L1 0 6180 6125 407 264 71 20 chrX 34827522 34827999 -142146141 + L1MEc LINE L1 2074 2573 -3642 374 317 44 38 chrX 34828149 34828332 -142145808 + MIR SINE MIR 20 203 -59 951 41 41 29 chrX 34828728 34828783 -142145357 + (TTTC)n Simple_repeat Simple_repeat 1 229 0 951 41 41 29 chrX 34828783 34828955 -142145185 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 303 158 0 18 chrX 34829164 34829221 -142144919 - FLAM SINE Alu 0 133 78 5175 152 26 8 chrX 34829336 34830214 -142143926 + MER54A LTR ERVL 8 901 0 1105 219 33 103 chrX 34830530 34830986 -142143154 + L1ME2 LINE L1 5709 6132 -32 2800 65 59 19 chrX 34831019 34831224 -142142916 + L1PA10 LINE L1 5781 6009 -159 270 0 0 0 chrX 34831224 34831254 -142142886 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 2800 65 59 19 chrX 34831254 34831420 -142142720 + L1PA10 LINE L1 6009 6167 -1 636 216 0 0 chrX 34831427 34831538 -142142602 + MER5A DNA MER1_type 75 185 -4 197 299 91 0 chrX 34831789 34831866 -142142274 + L2 LINE L2 3229 3312 -1 1081 211 102 87 chrX 34832182 34832418 -142141722 - L1ME2 LINE L1 -9 6155 5924 380 71 18 0 chrX 34832418 34832474 -142141666 + (CA)n Simple_repeat Simple_repeat 2 58 0 1081 211 102 87 chrX 34832474 34832521 -142141619 - L1ME2 LINE L1 -240 5924 5879 1899 131 7 18 chrX 34832521 34832804 -142141336 - AluJo SINE Alu -32 280 1 1081 211 102 87 chrX 34832804 34832978 -142141162 - L1ME2 LINE L1 -285 5879 5690 180 267 0 100 chrX 34833659 34833749 -142140391 + MIR SINE MIR 115 195 -67 506 134 25 8 chrX 34834140 34834230 -142139910 - L1MD3 LINE L1 -156 7839 7542 2980 179 63 28 chrX 34834235 34834703 -142139437 - L1MC4a LINE L1 -288 7520 7021 2068 140 3 16 chrX 34834703 34835017 -142139123 + AluJb SINE Alu 1 310 -2 2980 179 63 28 chrX 34835017 34835201 -142138939 - L1MC4a LINE L1 -787 7021 6845 5209 188 28 20 chrX 34835205 34836270 -142137870 - L1MC3 LINE L1 -7 7778 6705 840 239 82 87 chrX 34836297 34836866 -142137274 - LTR41 LTR ERVL -1 772 120 1884 227 75 16 chrX 34836873 34837682 -142136458 - L1MC4a LINE L1 -1512 6296 5390 918 116 4 43 chrX 34837681 34837836 -142136304 - L1ME4a LINE L1 -288 5833 5679 * 2130 181 26 46 chrX 34837847 34838042 -142136098 + L1MA9 LINE L1 5795 5992 -320 2274 124 24 32 chrX 34838042 34838420 -142135720 - THE1C LTR MaLR 0 375 1 2130 181 26 46 chrX 34838420 34838722 -142135418 + L1MA9 LINE L1 5992 6282 -30 320 307 0 9 chrX 34838735 34838849 -142135291 - L1MC4a LINE L1 -2428 5380 5268 923 196 12 120 chrX 34838849 34838901 -142135239 + MER58A DNA MER1_type 1 57 -2363 2225 92 0 3 chrX 34838901 34839217 -142134923 - AluY SINE Alu 0 315 1 923 196 12 120 chrX 34839217 34839374 -142134766 + MER58A DNA MER1_type 57 183 -2237 1327 142 163 75 chrX 34839374 34839706 -142134434 - MLT1A1 LTR MaLR 0 365 5 923 196 12 120 chrX 34839706 34839744 -142134396 + MER58A DNA MER1_type 183 223 -1 340 249 95 35 chrX 34839744 34839913 -142134227 - L1 LINE L1 -871 5275 5097 2414 69 0 31 chrX 34840087 34840406 -142133734 - AluY SINE Alu -2 309 1 983 217 85 9 chrX 34840476 34840794 -142133346 + L1MC4 LINE L1 7691 8032 -10 2446 133 25 14 chrX 34840932 34841294 -142132846 - MER47A DNA MER2_type 0 366 1 2222 113 0 3 chrX 34841318 34841610 -142132530 - AluSx SINE Alu -21 291 1 337 157 121 12 chrX 34841777 34841860 -142132280 - L1M4b LINE L1 -4500 2221 2130 1446 193 85 29 chrX 34841862 34842204 -142131936 + MLT1A2 LTR MaLR 1 361 -13 384 290 100 22 chrX 34842292 34842523 -142131617 - L1M4b LINE L1 -4766 1774 1526 4035 196 34 8 chrX 34842568 34843405 -142130735 - L1ME1 LINE L1 -2 6164 5307 466 372 54 18 chrX 34843504 34843894 -142130246 + MER89-int LTR ERV1 3512 3915 -2886 2620 197 154 66 chrX 34844337 34845181 -142128959 + LTR28 LTR ERV1 1 1020 0 1409 323 56 25 chrX 34845201 34846000 -142128140 + MER89-int LTR ERV1 2141 2964 -1683 2221 150 12 18 chrX 34846156 34846497 -142127643 - MER44D DNA MER2_type 0 609 1 1966 151 7 0 chrX 34846527 34846818 -142127322 - AluJo SINE Alu -15 297 5 768 261 0 19 chrX 34848696 34848907 -142125233 + L1M4 LINE L1 2390 2596 -3550 850 127 32 0 chrX 34848912 34849038 -142125102 + AluJb SINE Alu 162 291 -21 256 61 143 0 chrX 34849039 34849088 -142125052 + LTR64 LTR ERVK 503 558 0 255 0 0 0 chrX 34849088 34849118 -142125022 - L1M4b LINE L1 -5206 1334 1305 657 167 33 17 chrX 34849122 34849242 -142124898 - MSTC LTR MaLR -306 122 1 266 217 14 29 chrX 34849304 34849373 -142124767 - L1M4b LINE L1 -5685 757 690 2270 97 0 10 chrX 34849477 34849785 -142124355 - AluSg1 SINE Alu -4 305 1 407 346 21 17 chrX 34850700 34850940 -142123200 - PRIMA41-int LTR ERV1 -2899 4857 4617 198 103 0 0 chrX 34853001 34853030 -142121110 + (T)n Simple_repeat Simple_repeat 1 29 0 1361 167 35 125 chrX 34854345 34854770 -142119370 - PRIMA41-int LTR ERV1 -5183 1148 762 1704 185 11 3 chrX 34854773 34855060 -142119080 + AluJb SINE Alu 6 294 -18 1053 338 26 24 chrX 34855142 34855609 -142118531 - L1M4b LINE L1 -5183 1278 811 4512 145 32 101 chrX 34855642 34856089 -142118051 - L1M4c LINE L1 -5489 895 474 555 104 0 0 chrX 34856089 34856187 -142117953 - AluSg/x SINE Alu 0 309 212 4512 145 32 101 chrX 34856187 34856617 -142117523 - L1M4c LINE L1 -5910 474 16 1601 174 65 0 chrX 34856626 34856901 -142117239 - AluJo SINE Alu -19 293 1 318 188 12 50 chrX 34856902 34856982 -142117158 + L1M4 LINE L1 4845 4921 -1225 * 1724 92 17 8 chrX 34856977 34857236 -142116904 + L1PA10 LINE L1 5907 6167 0 962 201 15 57 chrX 34857236 34857500 -142116640 + L1M4 LINE L1 4907 5159 -987 1905 149 7 3 chrX 34858329 34858630 -142115510 - AluJo SINE Alu -10 302 1 432 220 22 0 chrX 34858846 34858937 -142115203 - L1M4b LINE L1 -5961 581 489 3256 76 5 13 chrX 34859052 34859501 -142114639 + LTR19B LTR ERV1 1 445 -135 12961 94 8 0 chrX 34859502 34861991 -142112149 + L1PA8 LINE L1 3666 6168 -4 201 162 0 0 chrX 34862120 34862157 -142111983 + A-rich Low_complexity Low_complexity 2 38 0 1003 107 0 0 chrX 34862157 34862297 -142111843 + LTR19A LTR ERV1 347 486 0 403 248 149 35 chrX 34862622 34862763 -142111377 - L2 LINE L2 0 3272 3116 525 268 80 35 chrX 34862947 34863347 -142110793 - L1M4 LINE L1 -3578 2568 2151 2153 104 0 55 chrX 34863437 34863764 -142110376 - AluSx SINE Alu -3 309 1 1104 98 0 20 chrX 34863796 34863949 -142110191 - L1PA10 LINE L1 -1 6167 6018 23 0 0 0 chrX 34864232 34864255 -142109885 + AT_rich Low_complexity Low_complexity 1 23 0 1014 120 0 0 chrX 34865753 34865897 -142108243 + FRAM SINE Alu 1 144 -382 2436 46 0 0 chrX 34865897 34866182 -142107958 + AluY SINE Alu 1 285 -26 1014 120 0 0 chrX 34866182 34866260 -142107880 + FRAM SINE Alu 143 390 0 1419 156 5 5 chrX 34866350 34866574 -142107566 + L1PA15 LINE L1 5942 6165 0 1201 117 0 124 chrX 34867427 34867676 -142106464 - AluJo SINE Alu -26 286 69 297 253 25 0 chrX 34868033 34868112 -142106028 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 237 267 0 0 chrX 34869559 34869619 -142104521 + (CCCA)n Simple_repeat Simple_repeat 2 61 0 279 269 0 0 chrX 34869654 34869762 -142104378 + (CCCA)n Simple_repeat Simple_repeat 2 109 0 201 354 6 12 chrX 34871033 34871194 -142102946 + CT-rich Low_complexity Low_complexity 4 163 0 206 268 0 65 chrX 34871482 34871605 -142102535 + C-rich Low_complexity Low_complexity 2 116 0 2739 42 0 0 chrX 34872402 34872713 -142101427 - AluY SINE Alu 0 311 1 2215 97 27 0 chrX 34873429 34873727 -142100413 - AluSx SINE Alu -6 306 1 473 310 112 52 chrX 34873733 34874466 -142099674 - L1M4 LINE L1 -2700 3446 2670 2285 122 0 0 chrX 34874665 34874969 -142099171 - AluSx SINE Alu -8 304 1 1497 121 27 5 chrX 34875558 34875782 -142098358 + MER30 DNA MER1_type 2 230 0 1866 222 156 30 chrX 34875785 34876312 -142097828 + MLT1E LTR MaLR 1 593 0 241 250 45 23 chrX 34876357 34876445 -142097695 - HAL1b LINE L1 -923 425 336 275 248 57 0 chrX 34876964 34877069 -142097071 - MIR SINE MIR -60 148 38 625 283 43 75 chrX 34877298 34877828 -142096312 - L1ME4a LINE L1 -3 6118 5606 2074 128 3 3 chrX 34877845 34878151 -142095989 + AluSx SINE Alu 1 306 -6 1247 134 26 125 chrX 34878154 34878517 -142095623 + AluSx SINE Alu 2 333 0 1158 110 0 0 chrX 34879151 34879305 -142094835 - AluSg/x SINE Alu -25 287 134 2192 123 0 3 chrX 34879305 34879614 -142094526 - AluSx SINE Alu -4 308 1 426 242 21 0 chrX 34879653 34879748 -142094392 + MER94 DNA DNA 4 100 -34 938 203 16 5 chrX 34879805 34879992 -142094148 + MER5A DNA MER1_type 1 189 0 189 94 0 0 chrX 34880457 34880489 -142093651 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1827 129 0 22 chrX 34880499 34880777 -142093363 - AluSx SINE Alu -40 272 1 185 65 32 0 chrX 34880872 34880903 -142093237 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 2207 103 0 27 chrX 34881078 34881378 -142092762 - AluSx SINE Alu -12 300 9 2756 193 14 52 chrX 34881447 34882023 -142092117 - MLT2B3 LTR ERVL 0 554 1 920 221 21 113 chrX 34882091 34882417 -142091723 + MLT1E-int LTR MaLR 1076 1371 0 2166 203 29 108 chrX 34882455 34883041 -142091099 + MLT1E LTR MaLR 52 591 -2 3666 24 0 0 chrX 34884448 34884863 -142089277 - L1PA4 LINE L1 -8 6147 5733 1817 19 0 0 chrX 34884863 34885068 -142089072 + L1P LINE L1 1671 1875 -4271 460 209 147 8 chrX 34885168 34885297 -142088843 - L1MB7 LINE L1 -31 6153 6007 3942 47 2 0 chrX 34885298 34885769 -142088371 + L1PA7 LINE L1 5682 6153 -1 37 0 0 0 chrX 34885769 34885806 -142088334 + AT_rich Low_complexity Low_complexity 1 37 0 279 274 43 74 chrX 34885814 34885960 -142088180 - L1M4 LINE L1 -2310 3836 3698 1787 104 108 32 chrX 34885960 34886096 -142088044 - AluSx SINE Alu -13 299 175 2413 77 0 7 chrX 34886096 34886394 -142087746 - AluY SINE Alu -15 296 1 1787 104 108 32 chrX 34886394 34886535 -142087605 - AluSx SINE Alu -137 175 1 279 274 43 74 chrX 34886535 34886618 -142087522 - L1M4 LINE L1 -2448 3698 3614 299 296 0 0 chrX 34886714 34886829 -142087311 - L1M4 LINE L1 -2674 3472 3358 2532 47 7 3 chrX 34886917 34887214 -142086926 - AluY SINE Alu -13 298 1 1673 141 16 1 chrX 34887369 34887646 -142086494 - L1MB7 LINE L1 -176 6008 5725 2322 164 13 8 chrX 34887675 34888058 -142086082 - MSTB1 LTR MaLR -47 385 1 1680 146 55 26 chrX 34888058 34888235 -142085905 - MSTB1-int LTR MaLR 0 1651 1460 2479 81 0 0 chrX 34888235 34888545 -142085595 + AluSx SINE Alu 1 310 -2 1680 146 55 26 chrX 34888545 34888676 -142085464 - MSTB1-int LTR MaLR -191 1460 1334 702 220 7 0 chrX 34888701 34888842 -142085298 - FRAM SINE Alu -30 146 5 21 0 0 0 chrX 34888915 34888936 -142085204 + AT_rich Low_complexity Low_complexity 1 21 0 995 185 6 29 chrX 34889745 34889918 -142084222 + FAM SINE Alu 1 169 -6 886 139 7 0 chrX 34890741 34890878 -142083262 - FLAM_C SINE Alu -5 138 1 441 235 48 7 chrX 34892010 34892144 -142081996 - MLT1H LTR MaLR -236 205 34 304 358 11 32 chrX 34892325 34892512 -142081628 + L1 LINE L1 4665 4847 -1299 818 150 0 0 chrX 34892558 34892678 -142081462 + AluSq/x SINE Alu 1 120 -193 23 0 0 0 chrX 34892678 34892701 -142081439 + AT_rich Low_complexity Low_complexity 1 23 0 245 234 0 31 chrX 34892730 34892794 -142081346 + L1 LINE L1 4924 4985 -1161 509 219 19 52 chrX 34892887 34893042 -142081098 + MER90 LTR ERV1 6 155 -420 280 214 83 12 chrX 34893357 34893441 -142080699 + MIR SINE MIR 160 249 -13 1859 162 0 26 chrX 34893467 34893770 -142080370 - AluJb SINE Alu -12 300 6 263 322 78 24 chrX 34894445 34894700 -142079440 - L1M4 LINE L1 -2000 4146 3878 542 208 20 0 chrX 34894707 34894808 -142079332 - HERV16 LTR ERVL -3158 1838 1736 1545 266 71 33 chrX 34895015 34895561 -142078579 - HERV16 LTR ERVL -3819 1177 611 2098 216 81 18 chrX 34895562 34896066 -142078074 + MLT1F LTR MaLR 1 536 -6 1321 254 33 15 chrX 34896072 34896407 -142077733 - HERV16 LTR ERVL -4382 614 274 698 310 10 5 chrX 34896441 34896644 -142077496 - HERV16 LTR ERVL -4791 205 2 1415 244 114 8 chrX 34896645 34897030 -142077110 - LTR16A LTR ERVL 0 450 25 906 243 0 6 chrX 34897482 34897659 -142076481 + MER41D LTR ERV1 382 557 0 628 219 0 17 chrX 34898047 34898166 -142075974 - LTR28 LTR ERV1 0 1020 904 952 214 249 49 chrX 34898167 34898536 -142075604 - LTR28 LTR ERV1 -270 750 308 718 159 194 3 chrX 34898545 34898684 -142075456 - LTR28 LTR ERV1 -600 678 1 229 321 37 30 chrX 34898973 34899107 -142075033 - MER87 LTR ERV1 0 541 407 207 0 0 0 chrX 34899523 34899546 -142074594 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 244 206 59 15 chrX 34899596 34899664 -142074476 + LTR58 LTR ERV1 350 420 -259 457 267 72 78 chrX 34900429 34900788 -142073352 - L1MDa LINE L1 -5840 700 344 1931 132 3 21 chrX 34900974 34901261 -142072879 - AluJo SINE Alu -17 295 14 1752 223 31 13 chrX 34901572 34901963 -142072177 + MER90 LTR ERV1 217 614 0 2654 142 31 10 chrX 34903080 34903497 -142070643 - MSTB LTR MaLR 0 426 1 189 107 0 0 chrX 34903858 34903886 -142070254 + (TAA)n Simple_repeat Simple_repeat 1 28 0 258 32 0 0 chrX 34903943 34903974 -142070166 + (CA)n Simple_repeat Simple_repeat 2 32 0 784 200 114 11 chrX 34904094 34904269 -142069871 - L1MD2 LINE L1 -270 6089 5897 337 224 19 19 chrX 34904266 34904373 -142069767 - L1M4 LINE L1 -2193 3953 3847 * 254 154 39 0 chrX 34904455 34904507 -142069633 + MIR SINE MIR 178 231 -31 1391 264 33 41 chrX 34904602 34905115 -142069025 - MLT1H LTR MaLR -4 545 3 1446 265 20 47 chrX 34905118 34905654 -142068486 + HAL1 LINE L1 1978 2499 -8 2355 101 0 3 chrX 34905700 34905998 -142068142 + AluSx SINE Alu 1 297 -15 2348 80 0 13 chrX 34906115 34906414 -142067726 + AluSc SINE Alu 1 295 -14 389 313 102 19 chrX 34906521 34906844 -142067296 + L1ME LINE L1 5410 5759 -362 2378 101 0 0 chrX 34956881 34957178 -142016962 + AluSx SINE Alu 1 297 -15 24 32 0 0 chrX 34957231 34957262 -142016878 + AT_rich Low_complexity Low_complexity 1 31 0 251 292 62 21 chrX 34957625 34957769 -142016371 - L1M4 LINE L1 -3104 3042 2893 25 0 0 0 chrX 34957798 34957823 -142016317 + AT_rich Low_complexity Low_complexity 1 25 0 1803 207 128 22 chrX 34957836 34958351 -142015789 - MLT1F1 LTR MaLR 0 567 1 25 0 0 0 chrX 34959017 34959042 -142015098 + AT_rich Low_complexity Low_complexity 1 25 0 6786 70 18 4 chrX 34959048 34960024 -142014116 - L1PA13 LINE L1 -11 6152 5172 1987 168 10 5 chrX 34960024 34960412 -142013728 + L1 LINE L1 4384 4773 -1373 * 7933 229 37 10 chrX 34960410 34961016 -142013124 - L1MCb LINE L1 -1581 5360 4772 2524 67 0 0 chrX 34961016 34961315 -142012825 - AluSp SINE Alu -14 299 1 7933 229 37 10 chrX 34961315 34963141 -142010999 - L1MCb LINE L1 -2169 4772 2810 2263 102 0 7 chrX 34963141 34963435 -142010705 - AluSq SINE Alu -21 292 1 7933 229 37 10 chrX 34963435 34963475 -142010665 - L1MCb LINE L1 -4131 2810 2773 2178 152 22 8 chrX 34963476 34963877 -142010263 + MER95 LTR ERV 1 407 -24 502 214 28 41 chrX 34963878 34964098 -142010042 - L1MCb LINE L1 -4223 2753 2412 1294 98 69 0 chrX 34964098 34964301 -142009839 - L1PA16 LINE L1 -7 6159 5943 502 214 28 41 chrX 34964301 34964379 -142009761 - L1MCb LINE L1 -4564 2412 2334 * 7433 168 65 24 chrX 34964377 34965754 -142008386 + L1PA12 LINE L1 10 1442 -6139 2492 198 2 0 chrX 34965835 34966351 -142007789 + L1P LINE L1 2616 3132 -3014 * 6553 104 12 4 chrX 34966347 34967572 -142006568 + L1PA14 LINE L1 4924 6160 -1 1916 248 64 10 chrX 34967566 34968260 -142005880 - L1MCb LINE L1 -4591 2350 1536 * 668 273 115 51 chrX 34968251 34968643 -142005497 - L1MCb LINE L1 -5702 720 3 * 277 253 13 0 chrX 34969540 34969615 -142004525 - MIR SINE MIR -8 254 179 385 256 8 30 chrX 34969666 34969799 -142004341 - L1 LINE L1 -1092 5054 4925 1607 186 38 78 chrX 34969836 34970233 -142003907 + MLT1C LTR MaLR 80 460 -7 283 297 70 41 chrX 34970297 34970519 -142003621 - L1 LINE L1 -1285 4861 4629 356 291 93 29 chrX 34970614 34970808 -142003332 + MLT1H LTR MaLR 3 252 -297 3019 128 36 16 chrX 34971338 34971430 -142002710 + L1MA4 LINE L1 5795 5884 -416 2232 132 0 0 chrX 34971430 34971733 -142002407 + AluSx SINE Alu 1 303 -9 3019 128 36 16 chrX 34971733 34972134 -142002006 + L1MA4 LINE L1 5884 6298 -2 895 262 56 77 chrX 34972663 34973128 -142001012 - LTR16A1 LTR ERVL -2 455 1 333 0 0 0 chrX 34973514 34973551 -142000589 + (TG)n Simple_repeat Simple_repeat 1 37 0 3078 110 16 12 chrX 34973673 34974099 -142000041 - MSTA LTR MaLR 0 428 1 186 43 0 0 chrX 34975559 34975582 -141998558 + (ATG)n Simple_repeat Simple_repeat 2 24 0 609 234 25 98 chrX 34975598 34975833 -141998307 - MIR SINE MIR -11 251 34 3908 106 11 30 chrX 34976001 34976538 -141997602 - MER1A DNA MER1_type 0 527 1 402 154 0 0 chrX 34976786 34976864 -141997276 + (CA)n Simple_repeat Simple_repeat 1 78 0 313 263 60 23 chrX 34977653 34977786 -141996354 + L1MC4a LINE L1 6057 6194 -1614 23 33 0 0 chrX 34978158 34978188 -141995952 + AT_rich Low_complexity Low_complexity 1 30 0 15178 49 0 9 chrX 34978191 34980049 -141994091 + L1P LINE L1 1 1842 -4304 * 43706 33 21 1 chrX 34980047 34986073 -141988067 - L1PA2 LINE L1 -1 6154 3 21860 25 0 0 chrX 34986072 34988617 -141985523 + L1P LINE L1 1833 4377 -1769 * 728 168 4 16 chrX 34988608 34988754 -141985386 + L1MC5 LINE L1 7100 7243 -733 * 901 249 62 21 chrX 34988881 34989170 -141984970 + L1MC5 LINE L1 7270 7570 -391 1011 158 6 18 chrX 34989209 34989380 -141984760 - AluJb SINE Alu -7 305 137 5052 166 84 19 chrX 34989381 34990272 -141983868 + L1MD2 LINE L1 4848 5680 -679 251 27 0 27 chrX 34990272 34990309 -141983831 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 5052 166 84 19 chrX 34990309 34990376 -141983764 + L1MD2 LINE L1 5680 5741 -618 2165 153 37 3 chrX 34990376 34990730 -141983410 - MER47A DNA MER2_type 0 366 1 5052 166 84 19 chrX 34990730 34991025 -141983115 + L1MD2 LINE L1 5741 6215 -144 2084 138 67 59 chrX 34991071 34991355 -141982785 + MSTD LTR MaLR 1 290 -106 2280 123 0 0 chrX 34991355 34991665 -141982475 - AluSq SINE Alu -3 310 1 2084 138 67 59 chrX 34991665 34991771 -141982369 + MSTD LTR MaLR 290 394 -2 491 189 161 96 chrX 34991773 34992033 -141982107 + L1MC5 LINE L1 7609 7885 -76 2013 169 33 19 chrX 34992239 34992599 -141981541 + MLT1A1 LTR MaLR 1 365 0 877 172 14 0 chrX 34992809 34992954 -141981186 + MER58B DNA MER1_type 195 341 0 3421 150 16 2 chrX 34992984 34993498 -141980642 + Tigger7 DNA MER2_type 1 521 -212 563 178 0 0 chrX 34993497 34993587 -141980553 + Tigger7 DNA MER2_type 2400 2489 -2 * 1230 177 10 0 chrX 34993635 34993838 -141980302 - MER70B LTR ERVL -361 217 13 3161 165 4 0 chrX 34994151 34994618 -141979522 + MER70A LTR ERVL 1 469 -3 298 217 0 0 chrX 34995186 34995246 -141978894 - LOR1-int LTR ERV1 -251 7505 7446 278 333 53 53 chrX 34995220 34995391 -141978749 - LOR1-int LTR ERV1 -253 6869 6699 * 428 178 14 0 chrX 34995462 34995535 -141978605 - MER49 LTR ERV1 -163 760 687 857 164 88 6 chrX 34995552 34995711 -141978429 - LOR1-int LTR ERV1 -181 6150 5979 12843 152 55 59 chrX 34995906 34998592 -141975548 - LOR1-int LTR ERV1 -514 5432 2758 2542 162 24 22 chrX 34998627 34999090 -141975050 - LOR1-int LTR ERV1 -2594 2286 1823 250 259 0 17 chrX 34999090 34999148 -141974992 - tRNA-Gly-GGG tRNA tRNA -10 64 8 641 190 58 8 chrX 34999150 34999271 -141974869 - LOR1-int LTR ERV1 -3120 1760 1634 * 647 136 31 14 chrX 34999260 34999453 -141974687 - LOR1-int LTR ERV1 -2530 4068 1701 253 27 0 0 chrX 34999484 34999521 -141974619 - MER41B LTR ERV1 -87 548 512 213 39 0 0 chrX 35000841 35000867 -141973273 + (TCC)n Simple_repeat Simple_repeat 1 26 0 511 233 127 20 chrX 35002002 35002152 -141971988 - MIR3 SINE MIR -22 186 21 198 0 0 0 chrX 35003709 35003731 -141970409 + (A)n Simple_repeat Simple_repeat 1 22 0 469 172 10 20 chrX 35005093 35005191 -141968949 - MER41B LTR ERV1 -107 528 432 2185 145 33 8 chrX 35005191 35005557 -141968583 - THE1C LTR MaLR 0 375 1 * 3079 111 2 2 chrX 35005557 35005993 -141968147 - MER41B LTR ERV1 -199 436 1 5893 116 17 17 chrX 35005995 35006895 -141967245 - MER41B-int LTR ERV1 -3 5943 5044 293 53 0 0 chrX 35006881 35006919 -141967221 - MER41B-int LTR ERV1 -1724 4222 4185 * 225 0 0 0 chrX 35006920 35006945 -141967195 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 9422 125 58 30 chrX 35006945 35008837 -141965303 - MER41B-int LTR ERV1 -2045 5005 2535 3016 98 26 32 chrX 35008812 35009273 -141964867 - MER41B-int LTR ERV1 -4157 1789 1332 * 4847 114 18 31 chrX 35009257 35009352 -141964788 - MER41B-int LTR ERV1 -5243 703 608 2229 81 14 7 chrX 35009352 35009647 -141964493 + AluSc SINE Alu 1 297 -12 4847 114 18 31 chrX 35009647 35010263 -141963877 - MER41B-int LTR ERV1 -5338 608 1 1027 93 33 0 chrX 35010263 35010413 -141963727 - MER41B LTR ERV1 0 554 400 3243 152 89 44 chrX 35010414 35011159 -141962981 - LTR36-int LTR ERV1 -6482 1638 861 859 240 26 30 chrX 35011231 35011464 -141962676 - LTR36-int LTR ERV1 -2723 1562 1331 621 283 7 87 chrX 35011792 35012078 -141962062 - LTR36-int LTR ERV1 -1422 364 102 1548 207 220 29 chrX 35012134 35012647 -141961493 - LTR36 LTR ERV1 0 611 1 3574 128 129 38 chrX 35012651 35013242 -141960898 + LTR8A LTR ERV1 1 661 -66 2280 81 0 17 chrX 35013242 35013538 -141960602 - AluSc SINE Alu -18 291 1 3574 128 129 38 chrX 35013538 35013612 -141960528 + LTR8A LTR ERV1 661 727 0 644 111 30 0 chrX 35013612 35013711 -141960429 + L1MB2 LINE L1 6068 6169 -2 718 196 60 91 chrX 35013753 35013952 -141960188 - LTR43 LTR ERV1 -287 315 123 445 110 24 0 chrX 35014094 35014176 -141959964 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 595 298 76 41 chrX 35014210 35014308 -141959832 + L1M4 LINE L1 3722 3815 -2331 2656 166 140 17 chrX 35014308 35014844 -141959296 - LTR43 LTR ERV1 0 602 1 595 298 76 41 chrX 35014844 35015231 -141958909 + L1M4 LINE L1 3815 4224 -1922 1526 264 133 59 chrX 35015328 35015990 -141958150 + MER50 LTR ERV1 1 711 -23 193 295 49 0 chrX 35016510 35016571 -141957569 + L2 LINE L2 2992 3055 -217 2223 128 22 33 chrX 35016805 35017173 -141956967 + THE1B LTR MaLR 1 364 0 415 229 36 52 chrX 35017298 35017490 -141956650 + L1MC5 LINE L1 7713 7901 -60 869 313 109 26 chrX 35017553 35017681 -141956459 + L1ME LINE L1 2328 2444 -3702 237 65 0 0 chrX 35017681 35017712 -141956428 + (TG)n Simple_repeat Simple_repeat 2 32 0 869 313 109 26 chrX 35017712 35018344 -141955796 + L1ME LINE L1 2444 3151 -2995 844 299 52 17 chrX 35018344 35018752 -141955388 + L1ME LINE L1 5383 5804 -358 267 253 0 0 chrX 35019076 35019151 -141954989 - L1ME3 LINE L1 -9 6153 6079 * 5980 183 117 96 chrX 35019150 35020646 -141953494 + L1MCa LINE L1 19 1481 -4945 2442 136 56 10 chrX 35020646 35021059 -141953081 - MSTB1 LTR MaLR 0 432 1 5980 183 117 96 chrX 35021059 35021915 -141952225 + L1MCa LINE L1 1481 2431 -3995 2285 100 21 32 chrX 35021915 35022294 -141951846 - THE1C LTR MaLR 0 375 1 5980 183 117 96 chrX 35022294 35022460 -141951680 + L1MCa LINE L1 2431 2592 -3834 22 94 0 0 chrX 35022538 35022602 -141951538 + AT_rich Low_complexity Low_complexity 1 64 0 839 240 17 4 chrX 35022709 35022942 -141951198 + L1MC4 LINE L1 5351 5586 -2222 1015 269 68 54 chrX 35023326 35023441 -141950699 + L1MC4 LINE L1 7094 7206 -836 2605 169 51 6 chrX 35023441 35023932 -141950208 - LTR44 LTR ERV1 -4 515 3 1015 269 68 54 chrX 35023932 35024488 -141949652 + L1MC4 LINE L1 7206 7775 -267 375 187 13 0 chrX 35024520 35024595 -141949545 + L1MD2 LINE L1 6057 6132 -227 877 201 0 0 chrX 35024598 35024752 -141949388 + FRAM SINE Alu 2 155 -21 2171 114 0 7 chrX 35024759 35025056 -141949084 + AluSx SINE Alu 1 295 -17 236 114 0 0 chrX 35025176 35025211 -141948929 + L1MC4 LINE L1 7793 7827 -215 1678 198 16 16 chrX 35025213 35025672 -141948468 - MER89 LTR ERV1 -1 558 1 817 137 0 0 chrX 35025987 35026104 -141948036 + FLAM_C SINE Alu 1 117 -16 558 0 0 0 chrX 35026109 35026171 -141947969 + (TG)n Simple_repeat Simple_repeat 2 63 0 374 230 32 8 chrX 35026354 35026480 -141947660 + L1MC4 LINE L1 7905 8033 -9 3153 77 21 10 chrX 35026862 35027342 -141946798 + L1MA1 LINE L1 5660 6144 -158 2390 77 0 0 chrX 35027348 35027635 -141946505 - AluSg1 SINE Alu -22 287 1 24 0 0 0 chrX 35027635 35027659 -141946481 + AT_rich Low_complexity Low_complexity 1 24 0 302 270 20 60 chrX 35027764 35027864 -141946276 + L2 LINE L2 3173 3268 -45 3422 61 30 2 chrX 35028468 35028909 -141945231 - MLT2A2 LTR ERVL 0 453 1 344 111 19 0 chrX 35028971 35029025 -141945115 + AluJ/FRAM SINE Alu 228 282 -20 207 0 0 0 chrX 35029028 35029051 -141945089 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 2029 130 0 26 chrX 35029262 35029570 -141944570 - AluJo SINE Alu -12 300 1 1002 239 52 38 chrX 35029678 35029755 -141944385 - L1ME LINE L1 -390 6166 6092 2637 108 60 34 chrX 35029755 35029946 -141944194 + MSTC LTR MaLR 1 185 -243 1805 79 146 0 chrX 35029946 35030199 -141943941 + AluSg SINE Alu 1 290 -20 2637 108 60 34 chrX 35030199 35030422 -141943718 + MSTC LTR MaLR 185 426 -2 1002 239 52 38 chrX 35030422 35030767 -141943373 - L1ME LINE L1 -464 6092 5738 1732 215 39 23 chrX 35030977 35031367 -141942773 + MSTD LTR MaLR 1 396 0 2997 157 76 7 chrX 35031404 35032022 -141942118 + LTR65 LTR ERV1 9 669 0 259 308 94 43 chrX 35032140 35032257 -141941883 - L2 LINE L2 -173 3099 2977 311 286 133 24 chrX 35033556 35033766 -141940374 - L1M4 LINE L1 -3234 2912 2680 5091 224 47 39 chrX 35033886 35035163 -141938977 - L1ME LINE L1 -1139 5401 4135 1910 162 7 0 chrX 35035163 35035460 -141938680 - AluJb SINE Alu -13 299 1 5091 224 47 39 chrX 35035460 35035716 -141938424 - L1ME LINE L1 -2405 4135 3882 2181 118 16 25 chrX 35035716 35036080 -141938060 + MER46B DNA MER2_type 1 236 0 5091 224 47 39 chrX 35036080 35036200 -141937940 - L1ME LINE L1 -2658 3882 3764 1519 104 45 0 chrX 35036200 35036420 -141937720 - MER30 DNA MER1_type 0 230 1 5091 224 47 39 chrX 35036420 35036507 -141937633 - L1ME LINE L1 -2776 3764 3646 2564 60 0 13 chrX 35036868 35037182 -141936958 - AluSp SINE Alu -2 311 2 1982 206 76 5 chrX 35038086 35038654 -141935486 - L1ME LINE L1 -2875 3665 3058 682 226 41 68 chrX 35038644 35038936 -141935204 - L1ME LINE L1 -6152 388 105 * 2172 116 6 10 chrX 35038988 35039299 -141934841 - AluSx SINE Alu 0 312 3 180 111 0 0 chrX 35039463 35039490 -141934650 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 1103 160 19 0 chrX 35039497 35039710 -141934430 - L1MB8 LINE L1 -311 5867 5651 245 152 0 0 chrX 35039745 35039791 -141934349 - L1MB8 LINE L1 -741 5433 5388 297 0 0 0 chrX 35039808 35039841 -141934299 + (CA)n Simple_repeat Simple_repeat 2 34 0 377 279 115 67 chrX 35039848 35039900 -141934240 - L1M4 LINE L1 -2888 3258 3210 1960 160 0 7 chrX 35039900 35040200 -141933940 - AluJb SINE Alu -14 298 1 377 279 115 67 chrX 35040200 35040506 -141933634 - L1M4 LINE L1 -2936 3210 2869 3885 164 9 40 chrX 35040527 35041334 -141932806 - L1MB8 LINE L1 -9 6169 5388 202 150 0 25 chrX 35041521 35041561 -141932579 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 183 338 34 74 chrX 35041985 35042133 -141932007 + MIR SINE MIR 102 243 -19 * 326 351 126 14 chrX 35042114 35042336 -141931804 - MIR SINE MIR -10 252 6 762 249 118 6 chrX 35043150 35043479 -141930661 - HAL1 LINE L1 -212 2295 1930 444 252 43 26 chrX 35043489 35043604 -141930536 - MIR SINE MIR -1 261 145 1092 128 0 0 chrX 35043604 35043753 -141930387 - FRAM SINE Alu -26 150 2 340 252 77 17 chrX 35043753 35043857 -141930283 - MIR SINE MIR -62 146 58 1042 221 76 7 chrX 35043873 35044149 -141929991 - HAL1 LINE L1 -580 1927 1633 228 259 0 25 chrX 35044211 35044292 -141929848 - HAL1 LINE L1 -857 1650 1572 2490 57 0 3 chrX 35044294 35044590 -141929550 - AluY SINE Alu -16 295 1 348 263 75 19 chrX 35044724 35044937 -141929203 - HAL1 LINE L1 -1322 1185 961 1468 110 48 13 chrX 35045011 35045238 -141928902 + MER46A DNA MER2_type 1 235 -1 22 70 0 0 chrX 35045402 35045445 -141928695 + AT_rich Low_complexity Low_complexity 1 43 0 342 263 61 0 chrX 35045463 35045562 -141928578 - L1ME LINE L1 -450 5720 5616 241 239 0 28 chrX 35045578 35045649 -141928491 - L1ME3A LINE L1 -8 6162 6094 2437 95 0 13 chrX 35045761 35046078 -141928062 + AluSq SINE Alu 1 313 0 1063 233 109 31 chrX 35046082 35046606 -141927534 + L1ME2 LINE L1 5203 5766 -404 800 182 8 0 chrX 35046606 35046738 -141927402 + FLAM_C SINE Alu 1 133 0 307 216 29 29 chrX 35046764 35046866 -141927274 + L1ME2 LINE L1 5847 5948 -222 314 289 47 84 chrX 35046945 35047135 -141927005 + L1ME2 LINE L1 5969 6151 -13 405 58 0 0 chrX 35047259 35047311 -141926829 + (CA)n Simple_repeat Simple_repeat 1 52 0 1126 280 27 43 chrX 35047348 35047976 -141926164 - L1MC4a LINE L1 -1894 5914 5297 305 286 33 66 chrX 35048156 35048338 -141925802 - L1MC4a LINE L1 -1090 5056 4881 13999 104 23 74 chrX 35048362 35049554 -141924586 - Tigger1 DNA MER2_type 0 2418 1167 2462 63 0 17 chrX 35049554 35049855 -141924285 - AluSc SINE Alu -13 296 1 13999 104 23 74 chrX 35049855 35049918 -141924222 - Tigger1 DNA MER2_type -1251 1167 1102 1800 173 10 13 chrX 35049918 35050225 -141923915 - AluJo SINE Alu -6 306 1 13999 104 23 74 chrX 35050225 35051189 -141922951 - Tigger1 DNA MER2_type -1316 1102 341 2336 75 0 3 chrX 35051189 35051481 -141922659 + AluSg1 SINE Alu 1 291 -18 13999 104 23 74 chrX 35051481 35051805 -141922335 - Tigger1 DNA MER2_type -2077 341 2 21 0 0 0 chrX 35052026 35052047 -141922093 + AT_rich Low_complexity Low_complexity 1 21 0 2313 125 0 0 chrX 35052142 35052454 -141921686 + AluSx SINE Alu 1 312 0 2069 97 30 34 chrX 35053038 35053336 -141920804 + AluSx SINE Alu 1 297 -15 280 270 237 5 chrX 35053900 35054115 -141920025 + L2 LINE L2 1477 1741 -1573 394 260 46 66 chrX 35054877 35055073 -141919067 - L1M4 LINE L1 -3715 2431 2240 2467 74 3 7 chrX 35055184 35055494 -141918646 + AluSp SINE Alu 1 309 -4 35 41 0 0 chrX 35055541 35055590 -141918550 + AT_rich Low_complexity Low_complexity 1 49 0 1496 184 110 11 chrX 35055993 35056357 -141917783 - LTR40b LTR ERVL 0 462 63 292 164 194 15 chrX 35056373 35056440 -141917700 + MER21B LTR ERV1 15 93 -770 1169 193 94 33 chrX 35056459 35056554 -141917586 + MER21B LTR ERV1 19 107 -756 1853 72 0 25 chrX 35056554 35056790 -141917350 - AluY SINE Alu -15 296 67 1169 193 94 33 chrX 35056790 35056969 -141917171 + MER21B LTR ERV1 107 310 -553 458 186 78 10 chrX 35056978 35057080 -141917060 + MER21B LTR ERV1 564 672 -191 573 214 17 0 chrX 35057114 35057231 -141916909 + MER21B LTR ERV1 312 430 -433 372 218 23 0 chrX 35057267 35057354 -141916786 + MER21B LTR ERV1 21 109 -754 1385 196 88 6 chrX 35057355 35057708 -141916432 + MER21B LTR ERV1 431 812 -51 368 179 0 0 chrX 35057745 35057812 -141916328 - LTR40a LTR ERVL -449 70 4 804 203 33 107 chrX 35057814 35058085 -141916055 - HERVL40 LTR ERVL -3 5527 5277 587 302 71 44 chrX 35058056 35058466 -141915674 - MER89-int LTR ERV1 -298 6503 6083 * 2249 78 33 16 chrX 35058621 35058927 -141915213 + AluSq SINE Alu 1 311 -2 1560 245 86 14 chrX 35059075 35059589 -141914551 - MER92C LTR ERV1 -3 551 1 717 329 19 22 chrX 35059877 35060287 -141913853 - MER92C-int LTR ERV1 -248 6553 6145 8261 242 51 19 chrX 35060297 35062496 -141911644 - HERVL40 LTR ERVL -1284 4246 1977 557 232 29 0 chrX 35062503 35062641 -141911499 - LTR40b LTR ERVL -15 447 306 2429 163 66 79 chrX 35062650 35063165 -141910975 - MER67C LTR ERV1 0 710 205 3531 76 13 4 chrX 35063165 35063640 -141910500 + L1PA10 LINE L1 5680 6158 -10 2429 163 66 79 chrX 35063640 35063810 -141910330 - MER67C LTR ERV1 -505 205 34 297 51 0 0 chrX 35066040 35066079 -141908061 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2058 139 3 0 chrX 35066082 35066370 -141907770 - AluSx SINE Alu -23 289 1 180 0 0 0 chrX 35070029 35070049 -141904091 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2098 127 0 3 chrX 35070051 35070343 -141903797 - AluSx SINE Alu -21 291 1 2527 188 86 28 chrX 35072060 35072714 -141901426 - MER67C LTR ERV1 0 710 19 317 232 30 50 chrX 35072740 35072839 -141901301 - LTR40b LTR ERVL -180 282 186 534 214 32 0 chrX 35072866 35072992 -141901148 - LTR40c LTR ERVL -332 133 4 3730 275 44 53 chrX 35072999 35074558 -141899582 - HERVL40 LTR ERVL -3564 1966 422 488 264 21 14 chrX 35074709 35074853 -141899287 - HERVL40 LTR ERVL -4354 1176 1032 761 267 102 8 chrX 35074883 35075119 -141899021 - HERVL40 LTR ERVL -5201 329 72 1950 170 35 51 chrX 35075119 35075612 -141898528 - MLT1D LTR MaLR 0 505 21 304 217 0 0 chrX 35075643 35075703 -141898437 - HERVL40 LTR ERVL -5454 76 17 1834 233 81 6 chrX 35075717 35076198 -141897942 - LTR40a LTR ERVL -2 517 1 775 204 40 55 chrX 35076198 35076509 -141897631 - L1MC5 LINE L1 -393 7415 7269 1947 155 3 3 chrX 35076600 35076890 -141897250 - AluJb SINE Alu -22 290 1 267 233 0 14 chrX 35076912 35076985 -141897155 - L1MC5 LINE L1 -818 7143 7072 1873 118 10 3 chrX 35077150 35077439 -141896701 - MSTC LTR MaLR 0 428 138 2733 112 87 0 chrX 35077448 35077860 -141896280 + MER83 LTR ERV1 1 448 0 207 0 0 0 chrX 35078145 35078168 -141895972 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1488 177 51 4 chrX 35078170 35078424 -141895716 - AluJo SINE Alu -30 282 17 2216 204 63 61 chrX 35078458 35079085 -141895055 - L1ME2 LINE L1 -1 6097 5464 2202 126 3 0 chrX 35079085 35079395 -141894745 + AluSx SINE Alu 1 311 -1 2216 204 63 61 chrX 35079395 35079948 -141894192 - L1ME2 LINE L1 -634 5464 4914 350 210 132 59 chrX 35079945 35080164 -141893976 - L1ME2 LINE L1 -2953 3127 2893 * 903 214 23 61 chrX 35080167 35080342 -141893798 + MLT1E LTR MaLR 1 164 -429 2454 79 0 0 chrX 35080342 35080646 -141893494 + AluSg1 SINE Alu 1 304 -5 903 214 23 61 chrX 35080646 35080732 -141893408 + MLT1E LTR MaLR 164 252 -341 834 201 64 29 chrX 35080734 35080938 -141893202 - MLT1E LTR MaLR -62 531 321 275 183 0 17 chrX 35080936 35080996 -141893144 + MLT1F LTR MaLR 484 542 0 * 302 215 149 9 chrX 35081000 35081107 -141893033 + MLT1F-int LTR MaLR 5 126 -1609 302 328 41 0 chrX 35081131 35081253 -141892887 + MLT1F-int LTR MaLR 756 882 -489 1384 235 88 52 chrX 35081452 35081834 -141892306 - L1ME2 LINE L1 -4789 1291 924 1418 160 32 120 chrX 35081834 35082234 -141891906 - MLT1A1 LTR MaLR 0 365 1 1384 235 88 52 chrX 35082234 35082959 -141891181 - L1ME2 LINE L1 -5156 924 257 1032 189 17 0 chrX 35082964 35083144 -141890996 - AluJb SINE Alu 0 312 130 443 270 22 29 chrX 35083194 35083331 -141890809 - L1ME2 LINE L1 -5903 167 32 1363 197 56 17 chrX 35083359 35083719 -141890421 - L1M4 LINE L1 -1157 4989 4616 553 225 189 13 chrX 35083727 35083954 -141890186 + L1M4 LINE L1 2562 2828 -3318 24 0 0 0 chrX 35084132 35084156 -141889984 + AT_rich Low_complexity Low_complexity 1 24 0 1929 155 48 109 chrX 35084537 35085034 -141889106 + MLT1C LTR MaLR 1 467 0 2716 149 13 12 chrX 35085034 35085628 -141888512 + MLT1C-int LTR MaLR 1 709 -662 281 186 0 0 chrX 35085624 35085683 -141888457 + MLT1C-int LTR MaLR 829 887 -484 * 270 317 10 0 chrX 35085745 35085846 -141888294 + MLT-int LTR MaLR 676 777 -958 2879 96 36 12 chrX 35085974 35086392 -141887748 - MSTA LTR MaLR 0 428 1 14232 177 15 7 chrX 35086791 35089422 -141884718 - ERVL LTR ERVL -2402 3362 642 2174 184 2 41 chrX 35089416 35089883 -141884257 - MER31B-int LTR ERV1 -4157 779 331 * 864 113 0 0 chrX 35090075 35090190 -141883950 + AluSg/x SINE Alu 187 301 -11 747 182 63 0 chrX 35090190 35090333 -141883807 - MER31B-int LTR ERV1 -4775 161 10 1633 142 24 62 chrX 35090376 35090770 -141883370 - MER31B LTR ERV1 0 661 93 1542 158 19 0 chrX 35090775 35091034 -141883106 - ERVL LTR ERVL -695 5069 4806 2028 143 25 81 chrX 35091054 35091496 -141882644 + MLT1C-int LTR MaLR 955 1371 0 1218 128 102 13 chrX 35091498 35091733 -141882407 + MLT1C LTR MaLR 3 258 -209 1050 200 32 56 chrX 35091727 35092012 -141882128 + MLT1C LTR MaLR 190 467 0 * 325 221 18 35 chrX 35092944 35092963 -141881177 - L1MA10 LINE L1 0 6334 6316 5897 218 56 26 chrX 35092963 35094241 -141879899 - L1ME2 LINE L1 -9 6089 4851 2863 181 11 40 chrX 35094241 35094815 -141879325 - MER74A LTR ERVL 0 558 2 5897 218 56 26 chrX 35094815 35096241 -141877899 - L1ME2 LINE L1 -1247 4851 3307 552 212 208 5 chrX 35096233 35096445 -141877695 - L1ME2 LINE L1 -3330 2750 2496 * 1393 210 11 16 chrX 35096463 35096834 -141877306 + L1M4 LINE L1 4625 4993 -1153 1211 296 66 24 chrX 35096954 35097592 -141876548 - L1ME2 LINE L1 -5404 666 2 1595 213 65 46 chrX 35097592 35098257 -141875883 - L1M4 LINE L1 -1817 4329 3579 584 237 53 38 chrX 35098297 35098563 -141875577 - L1M4 LINE L1 -2552 3594 3325 1652 231 44 11 chrX 35098599 35099150 -141874990 + L1ME3 LINE L1 2405 2973 -3173 1060 68 23 0 chrX 35099150 35099283 -141874857 + AluSx SINE Alu 1 136 -176 13300 17 0 0 chrX 35099283 35101600 -141872540 + L1PA4 LINE L1 3837 6152 -3 1364 117 0 0 chrX 35101625 35101813 -141872327 + AluSx SINE Alu 119 306 -4 2167 93 4 4 chrX 35102929 35103209 -141870931 + AluSx SINE Alu 19 298 -14 959 284 35 15 chrX 35103959 35104413 -141869727 + L1ME3 LINE L1 3172 3634 -2512 2981 196 55 49 chrX 35104420 35105382 -141868758 + L1ME3 LINE L1 5136 6090 -72 278 156 31 0 chrX 35105435 35105499 -141868641 + L1ME3 LINE L1 6096 6161 -1 241 313 0 20 chrX 35105572 35105671 -141868469 - L1ME LINE L1 -631 5535 5439 207 0 0 0 chrX 35105879 35105902 -141868238 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 359 136 0 0 chrX 35105908 35105974 -141868166 - L1 LINE L1 -2130 4016 3951 5170 28 3 0 chrX 35105986 35106589 -141867551 - L1PA3 LINE L1 0 6155 5551 2327 20 5 0 chrX 35106589 35107018 -141867122 + L1PA3 LINE L1 5117 5547 -608 181 254 17 17 chrX 35108794 35108853 -141865287 - L2 LINE L2 0 3313 3255 402 289 82 21 chrX 35109151 35109350 -141864790 - MLT1J LTR MaLR -236 198 3 1456 180 25 25 chrX 35109629 35109912 -141864228 + AluJo SINE Alu 23 305 -7 563 288 35 12 chrX 35110553 35110723 -141863417 + MIR SINE MIR 34 207 -55 334 260 0 0 chrX 35110755 35110832 -141863308 + Tigger3(Golem) DNA MER2_type 66 142 -2887 * 1547 144 0 19 chrX 35110829 35111092 -141863048 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 744 285 85 36 chrX 35113758 35114203 -141859937 + MLT1H LTR MaLR 81 547 -2 229 243 27 27 chrX 35114395 35114469 -141859671 - MER9 LTR ERVK -208 303 230 254 283 30 30 chrX 35114483 35114582 -141859558 + MLT-int LTR MaLR 464 562 -1173 227 337 22 22 chrX 35114894 35114986 -141859154 + MLT1H-int LTR MaLR 787 878 -493 560 257 72 108 chrX 35115206 35115568 -141858572 + MLT1H-int LTR MaLR 1023 1371 0 2220 237 85 33 chrX 35115614 35115867 -141858273 - L1MCc LINE L1 -4887 1536 1298 1898 177 28 11 chrX 35115867 35116223 -141857917 - MLT1A1 LTR MaLR 0 365 4 2220 237 85 33 chrX 35116223 35116841 -141857299 - L1MCc LINE L1 -5125 1298 808 1315 276 115 19 chrX 35116946 35117476 -141856664 - L1MCc LINE L1 -5824 599 19 709 224 64 81 chrX 35117515 35117854 -141856286 + MLT1H LTR MaLR 54 403 -192 1252 222 173 78 chrX 35117882 35118369 -141855771 + MLT1F LTR MaLR 10 542 0 282 214 94 51 chrX 35118393 35118510 -141855630 + MLT1H LTR MaLR 428 549 0 256 250 36 79 chrX 35118738 35118878 -141855262 - L1ME LINE L1 -284 5837 5704 579 204 56 31 chrX 35118900 35119062 -141855078 + MIR SINE MIR 9 174 -88 1747 207 65 43 chrX 35119073 35119518 -141854622 - MLT1C LTR MaLR -2 465 11 314 290 98 42 chrX 35119765 35119979 -141854161 - L2 LINE L2 -1216 2098 1873 2256 217 117 10 chrX 35120126 35120606 -141853534 + MLT2E LTR ERVL 83 613 -15 699 267 148 9 chrX 35120611 35120956 -141853184 - HAL1b LINE L1 -854 494 102 345 268 158 11 chrX 35121339 35121522 -141852618 - L1MC4 LINE L1 -143 7899 7690 8451 219 44 44 chrX 35121522 35123227 -141850913 - L1ME1 LINE L1 -4 6162 4459 2323 60 3 0 chrX 35123227 35123512 -141850628 + AluY SINE Alu 2 287 -24 8451 219 44 44 chrX 35123512 35124840 -141849300 - L1ME1 LINE L1 -1707 4459 3129 2451 99 0 0 chrX 35124840 35125152 -141848988 + AluSx SINE Alu 1 312 0 8451 219 44 44 chrX 35125152 35125697 -141848443 - L1ME1 LINE L1 -3037 3129 2586 1601 200 19 32 chrX 35125702 35126062 -141848078 - Tigger7 DNA MER2_type 0 2491 1 891 230 133 0 chrX 35126062 35126362 -141847778 - L1ME1 LINE L1 -3565 2581 2242 724 205 97 5 chrX 35126345 35126530 -141847610 - L1MD3 LINE L1 -12 7983 7782 * 2364 197 127 11 chrX 35126530 35127025 -141847115 - MER77 LTR ERV1 -4 601 22 3248 183 134 132 chrX 35127063 35127431 -141846709 - L1MD3 LINE L1 -220 7775 7409 625 198 33 0 chrX 35127431 35127552 -141846588 - MLT1F1 LTR MaLR -442 125 1 3248 183 134 132 chrX 35127552 35128234 -141845906 - L1MD3 LINE L1 -586 7409 6599 2314 97 0 0 chrX 35128234 35128526 -141845614 + AluSx SINE Alu 1 293 -14 210 105 0 0 chrX 35128526 35128564 -141845576 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 3248 183 134 132 chrX 35128569 35128675 -141845465 - L1MD3 LINE L1 -1396 6599 6495 4469 234 22 31 chrX 35128677 35129009 -141845131 - L1M4 LINE L1 -1287 4859 4525 3147 12 0 0 chrX 35129009 35129341 -141844799 - L1PA4 LINE L1 -11 6144 5813 4469 234 22 31 chrX 35129341 35129378 -141844762 - L1M4 LINE L1 -1621 4525 4489 1674 88 31 18 chrX 35129378 35129604 -141844536 + MER30 DNA MER1_type 1 229 -1 4469 234 22 31 chrX 35129604 35130519 -141843621 - L1M4 LINE L1 -1657 4489 3586 1026 141 6 12 chrX 35130526 35130689 -141843451 + L1MB5 LINE L1 5494 5655 -525 1348 137 9 9 chrX 35130691 35130903 -141843237 - MER47B DNA MER2_type 0 418 207 6421 160 27 14 chrX 35130903 35132017 -141842123 + LTR19B-int LTR ERV1 3466 4594 -421 6170 83 22 20 chrX 35132011 35132875 -141841265 + LTR19B-int LTR ERV1 4718 5583 -3 * 3441 111 83 63 chrX 35132878 35133447 -141840693 + LTR19B LTR ERV1 1 580 0 482 216 108 3 chrX 35133447 35133595 -141840545 - MER47B DNA MER2_type -207 211 1 2697 166 38 14 chrX 35133596 35134102 -141840038 + L1MB5 LINE L1 5657 6174 0 1434 187 164 24 chrX 35134102 35134351 -141839789 + L1MC4a LINE L1 4996 5209 -955 1707 164 18 0 chrX 35134351 35134632 -141839508 + AluJo SINE Alu 4 289 -23 1434 187 164 24 chrX 35134632 35135050 -141839090 + L1MC4a LINE L1 5209 5759 -405 6505 197 80 30 chrX 35135050 35135208 -141838932 + L1MC4a LINE L1 6053 6202 -1606 2244 104 17 0 chrX 35135208 35135506 -141838634 + AluSx SINE Alu 1 303 -9 6505 197 80 30 chrX 35135506 35135819 -141838321 + L1MC4a LINE L1 6202 6498 -1310 201 39 0 0 chrX 35135819 35135845 -141838295 + (GA)n Simple_repeat Simple_repeat 1 26 0 6505 197 80 30 chrX 35135845 35136224 -141837916 + L1MC4a LINE L1 6498 6857 -951 207 69 0 0 chrX 35136224 35136253 -141837887 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6505 197 80 30 chrX 35136253 35136657 -141837483 + L1MC4a LINE L1 6857 7239 -569 2447 86 0 0 chrX 35136657 35136960 -141837180 + AluSq SINE Alu 1 303 -10 6505 197 80 30 chrX 35136960 35137345 -141836795 + L1MC4a LINE L1 7239 7806 -2 690 148 6 159 chrX 35137384 35137566 -141836574 - L1ME LINE L1 -526 5640 5487 1985 231 31 61 chrX 35137579 35138119 -141836021 + MLT1F1 LTR MaLR 1 549 -18 690 272 34 38 chrX 35138121 35138356 -141835784 + L1MC5 LINE L1 5426 5659 -2149 6714 135 28 5 chrX 35138371 35139493 -141834647 + L1MC1 LINE L1 5175 6333 0 455 211 234 28 chrX 35139489 35139707 -141834433 + L1MC5 LINE L1 5673 5935 -1873 * 273 214 36 0 chrX 35139708 35139792 -141834348 + (TA)n Simple_repeat Simple_repeat 1 87 0 3014 82 3 3 chrX 35141098 35141462 -141832678 + THE1B LTR MaLR 1 364 0 2099 209 110 71 chrX 35141751 35142378 -141831762 + L1MC5 LINE L1 6558 7242 -719 1725 154 7 40 chrX 35142378 35142566 -141831574 + AluJo SINE Alu 1 177 -135 2508 60 3 3 chrX 35142566 35142866 -141831274 + AluY SINE Alu 1 300 -11 1725 154 7 40 chrX 35142866 35142976 -141831164 + AluJo SINE Alu 177 289 -23 2099 209 110 71 chrX 35142976 35143300 -141830840 + L1MC5 LINE L1 7242 7552 -409 656 247 49 0 chrX 35143300 35143491 -141830649 + MLT1E LTR MaLR 1 212 -442 * 3218 98 60 29 chrX 35143488 35144037 -141830103 - Tigger3(Golem) DNA MER2_type -186 2843 2278 708 160 19 0 chrX 35144028 35144134 -141830006 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 10719 206 40 42 chrX 35144134 35145420 -141828720 + L1M2 LINE L1 2578 3866 -3699 1677 156 140 55 chrX 35145420 35145463 -141828677 + MSTD LTR MaLR 1 39 -357 1820 148 41 0 chrX 35145463 35145821 -141828319 + AluJb SINE Alu 1 369 0 1677 156 140 55 chrX 35145821 35146141 -141827999 + MSTD LTR MaLR 39 396 0 10719 206 40 42 chrX 35146141 35148415 -141825725 + L1M2 LINE L1 3866 6142 -1423 783 148 0 8 chrX 35148418 35148540 -141825600 - FLAM_A SINE Alu -2 140 20 3127 135 76 16 chrX 35148540 35149269 -141824871 + L1M2 LINE L1 6361 7156 -575 1114 284 16 70 chrX 35149345 35149834 -141824306 + MER110-int LTR ERV1 3310 3772 -875 2489 64 3 0 chrX 35149836 35150132 -141824008 + AluSq SINE Alu 1 297 -16 849 151 0 0 chrX 35150861 35150980 -141823160 + FLAM_C SINE Alu 1 119 -14 31 0 0 0 chrX 35150983 35151014 -141823126 + AT_rich Low_complexity Low_complexity 1 31 0 256 365 9 9 chrX 35152179 35152447 -141821693 - HERVL74 LTR ERVL -813 2743 2316 1150 253 100 38 chrX 35153944 35154423 -141819717 + MLT2B1 LTR ERVL 4 512 -8 1653 149 0 84 chrX 35156267 35156610 -141817530 + AluJo SINE Alu 1 317 0 1932 185 85 41 chrX 35156869 35157377 -141816763 - LTR55 LTR ERV -18 530 1 694 245 83 9 chrX 35157381 35157597 -141816543 - L1M4 LINE L1 -1158 4988 4757 * 1478 221 38 55 chrX 35157590 35158120 -141816020 - L1M4 LINE L1 -1644 4502 3982 4444 134 156 24 chrX 35158125 35159121 -141815019 - MER11B LTR ERVK -4 1232 1 393 0 0 0 chrX 35159143 35159190 -141814950 + L1PA3 LINE L1 6109 6155 0 316 280 23 38 chrX 35159205 35159337 -141814803 - HAL1 LINE L1 -2375 132 3 25 51 0 0 chrX 35159716 35159755 -141814385 + AT_rich Low_complexity Low_complexity 1 39 0 272 274 24 16 chrX 35160022 35160146 -141813994 - L1M4 LINE L1 -3667 2479 2355 1901 162 3 3 chrX 35160181 35160471 -141813669 - AluJb SINE Alu -22 290 1 701 174 0 87 chrX 35160567 35160716 -141813424 + MLT1A1 LTR MaLR 14 149 -225 2624 148 14 37 chrX 35160716 35160910 -141813230 + MSTB LTR MaLR 1 198 -228 1258 134 10 15 chrX 35160910 35161112 -141813028 + L1PB3 LINE L1 5954 6154 0 2624 148 14 37 chrX 35161112 35161351 -141812789 + MSTB LTR MaLR 198 424 -2 1324 80 0 21 chrX 35161351 35161539 -141812601 + MSTB-int LTR MaLR 1 184 -1467 1344 134 10 0 chrX 35161565 35161766 -141812374 + MSTB-int LTR MaLR 172 374 -1277 1484 171 63 22 chrX 35161844 35162207 -141811933 + SVA Other Other 436 813 -573 189 0 0 0 chrX 35162309 35162330 -141811810 + (A)n Simple_repeat Simple_repeat 1 21 0 745 89 0 0 chrX 35162402 35162492 -141811648 - AluSg/x SINE Alu -14 296 207 7208 168 45 17 chrX 35162494 35162622 -141811518 + MSTB-int LTR MaLR 361 484 -1167 2416 103 0 0 chrX 35162622 35162933 -141811207 + AluSx SINE Alu 1 311 -1 7208 168 45 17 chrX 35162933 35164059 -141810081 + MSTB-int LTR MaLR 484 1651 0 1977 188 115 3 chrX 35164059 35164442 -141809698 + MSTB LTR MaLR 1 426 0 997 204 50 18 chrX 35164447 35164667 -141809473 + MLT1A1 LTR MaLR 139 365 0 255 217 0 0 chrX 35164725 35164785 -141809355 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 277 279 29 0 chrX 35164892 35164996 -141809144 - L1M4 LINE L1 -3796 2350 2244 2429 103 138 5 chrX 35165969 35166347 -141807793 - MSTA LTR MaLR 0 428 1 1131 285 73 9 chrX 35166352 35166805 -141807335 - L1M4 LINE L1 -1780 4366 3885 277 244 183 5 chrX 35166867 35167064 -141807076 - L1M4 LINE L1 -2745 3401 3170 257 208 52 13 chrX 35167710 35167787 -141806353 - L1MC4 LINE L1 -1349 6693 6614 273 315 0 0 chrX 35167790 35167879 -141806261 - L1MC4 LINE L1 -1340 6702 6614 240 236 45 45 chrX 35167867 35167956 -141806184 + L1MC4 LINE L1 6614 6702 -1340 * 236 279 47 0 chrX 35167891 35167977 -141806163 - L1MC4 LINE L1 -1339 6703 6614 * 227 175 32 48 chrX 35167936 35167999 -141806141 + L1MC4 LINE L1 2006 2067 -4359 * 260 213 35 42 chrX 35168029 35168148 -141805992 + L1MC4 LINE L1 1995 6983 -1339 354 239 0 0 chrX 35168149 35168241 -141805899 + (TA)n Simple_repeat Simple_repeat 2 93 0 2079 135 30 0 chrX 35168288 35168584 -141805556 - AluSx SINE Alu -7 305 1 2448 127 70 5 chrX 35169102 35169504 -141804636 - MSTA LTR MaLR 0 428 1 750 284 117 35 chrX 35171319 35171805 -141802335 - L1MC4a LINE L1 -1714 6094 5569 2047 122 3 14 chrX 35174451 35174745 -141799395 - AluJo SINE Alu -21 291 1 717 155 136 0 chrX 35175250 35175405 -141798735 + MER104 DNA MER2_type 5 180 0 225 278 9 70 chrX 35175654 35175769 -141798371 + MER5B DNA MER1_type 1 108 -70 415 308 71 6 chrX 35175776 35175958 -141798182 + MIR SINE MIR 2 195 -67 198 143 0 0 chrX 35176000 35176035 -141798105 + (CTA)n Simple_repeat Simple_repeat 1 35 0 386 20 20 0 chrX 35176232 35176283 -141797857 + (TG)n Simple_repeat Simple_repeat 2 53 0 3583 120 21 7 chrX 35176403 35176971 -141797169 + L1MA6 LINE L1 5725 6300 0 268 254 160 28 chrX 35177004 35177185 -141796955 + L1MC4a LINE L1 5936 6140 -1668 1591 191 110 64 chrX 35177435 35177992 -141796148 + L1MC5 LINE L1 6558 7133 -828 2370 94 0 0 chrX 35177995 35178292 -141795848 + AluY SINE Alu 1 297 -14 3255 144 19 15 chrX 35178292 35178877 -141795263 + L1MB7 LINE L1 5598 6184 0 1779 283 81 8 chrX 35179978 35180976 -141793164 + L1ME3A LINE L1 4755 5831 -339 2321 198 218 10 chrX 35181010 35181785 -141792355 + L1ME1 LINE L1 5047 5966 -200 669 243 72 64 chrX 35181810 35182064 -141792076 + MER77 LTR ERV1 332 656 -22 6953 99 0 1 chrX 35182064 35182969 -141791171 + HERVL-A2 LTR ERVL 4751 5654 0 2108 160 52 35 chrX 35182969 35183508 -141790632 + MLT2A2 LTR ERVL 1 554 0 1833 223 137 10 chrX 35183799 35184310 -141789830 + L1MC4 LINE L1 6342 6917 -1125 2260 148 24 26 chrX 35184360 35184412 -141789728 + MSTB LTR MaLR 1 52 -374 2285 109 0 0 chrX 35184412 35184705 -141789435 + AluSx SINE Alu 1 293 -19 2260 148 24 26 chrX 35184705 35185030 -141789110 + MSTB LTR MaLR 52 377 -49 2529 191 93 35 chrX 35185040 35185523 -141788617 + L1MC4 LINE L1 6902 7438 -604 2179 132 3 0 chrX 35185523 35185826 -141788314 + AluSx SINE Alu 1 304 -8 2529 191 93 35 chrX 35185826 35186028 -141788112 + L1MC4 LINE L1 7438 7627 -415 391 212 0 0 chrX 35186039 35186124 -141788016 + L1MC4 LINE L1 7746 7830 -212 977 182 132 41 chrX 35186124 35186344 -141787796 + MER76 LTR ERV 1 240 -448 395 261 8 23 chrX 35186870 35187000 -141787140 + L1MC4 LINE L1 7891 8018 -24 * 500 279 119 56 chrX 35186998 35187392 -141786748 + L1ME LINE L1 5364 5782 -339 1925 168 33 55 chrX 35187410 35187809 -141786331 + MLT1B LTR MaLR 1 390 0 2278 238 29 37 chrX 35187970 35188596 -141785544 + L1MDb LINE L1 141 761 -5782 4967 163 44 4 chrX 35188598 35189420 -141784720 - MER54A LTR ERVL 0 901 47 2001 219 86 34 chrX 35189394 35189951 -141784189 + MER21B LTR ERV1 142 727 -136 * 3097 181 79 59 chrX 35189972 35190855 -141783285 + L1MDb LINE L1 1169 2069 -4471 2243 115 0 0 chrX 35191021 35191317 -141782823 - AluSx SINE Alu -16 296 1 2409 77 0 10 chrX 35191428 35191727 -141782413 + AluSc SINE Alu 1 296 -13 3988 218 54 45 chrX 35191727 35192995 -141781145 + L1MD1 LINE L1 1302 2557 -3983 1650 169 48 65 chrX 35192995 35193392 -141780748 + MLT1B LTR MaLR 1 390 0 3988 218 54 45 chrX 35193392 35193423 -141780717 + L1MD1 LINE L1 2557 2586 -3954 2002 128 31 0 chrX 35193423 35193711 -141780429 + AluJb SINE Alu 1 297 -15 3988 218 54 45 chrX 35193711 35193889 -141780251 + L1MD1 LINE L1 2586 2761 -3779 2168 116 3 0 chrX 35193889 35194181 -141779959 + AluSx SINE Alu 1 293 -19 3988 218 54 45 chrX 35194181 35194447 -141779693 + L1MD1 LINE L1 2761 3079 -3461 1363 101 0 21 chrX 35194447 35194635 -141779505 - AluSg/x SINE Alu 0 312 129 1239 225 35 19 chrX 35194636 35194952 -141779188 + L1MD1 LINE L1 3073 3393 -3147 2318 93 13 7 chrX 35194953 35195254 -141778886 + AluSx SINE Alu 1 303 -9 3843 145 25 22 chrX 35195256 35195475 -141778665 + L1MA5 LINE L1 5613 5830 -470 2056 111 59 0 chrX 35195475 35195763 -141778377 + AluSx SINE Alu 1 305 -7 3843 145 25 22 chrX 35195763 35196227 -141777913 + L1MA5 LINE L1 5830 6298 -2 2354 96 0 0 chrX 35196230 35196521 -141777619 + AluSx SINE Alu 1 291 -21 21 0 0 0 chrX 35196528 35196549 -141777591 + AT_rich Low_complexity Low_complexity 1 21 0 4551 185 60 18 chrX 35196560 35196656 -141777484 + L1MD1 LINE L1 5295 5385 -1251 2406 85 0 0 chrX 35196656 35196950 -141777190 + AluSx SINE Alu 1 294 -18 4551 185 60 18 chrX 35196950 35198138 -141776002 + L1MD1 LINE L1 5385 6627 -9 585 252 119 31 chrX 35198122 35198324 -141775816 + L1ME1 LINE L1 5884 6106 -108 * 2252 100 7 3 chrX 35201163 35201464 -141772676 + AluSx SINE Alu 1 302 -10 632 224 133 20 chrX 35202103 35202299 -141771841 + MLT1J LTR MaLR 286 503 -8 256 91 0 0 chrX 35203337 35203370 -141770770 - Alu SINE Alu -46 256 224 618 72 0 24 chrX 35203923 35204006 -141770134 + MSTD LTR MaLR 1 81 -315 255 65 0 0 chrX 35204006 35204037 -141770103 + MSTD LTR MaLR 45 75 -321 522 320 11 0 chrX 35204480 35204655 -141769485 + (CCA)n Simple_repeat Simple_repeat 3 179 0 936 202 14 16 chrX 35206215 35206451 -141767689 + MIR SINE MIR 5 232 -30 2344 79 0 17 chrX 35206532 35206824 -141767316 + AluSg SINE Alu 5 291 -19 2368 83 37 0 chrX 35207436 35207775 -141766365 - AluSx SINE Alu 0 350 1 216 0 0 0 chrX 35208276 35208300 -141765840 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1943 143 3 37 chrX 35208392 35208713 -141765427 + AluSx SINE Alu 1 310 -2 2658 45 0 3 chrX 35209007 35209317 -141764823 + AluY SINE Alu 1 309 -2 225 0 0 0 chrX 35209389 35209414 -141764726 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 2041 148 3 0 chrX 35209416 35209720 -141764420 - AluSx SINE Alu -7 305 1 23 68 0 0 chrX 35210262 35210306 -141763834 + AT_rich Low_complexity Low_complexity 1 44 0 815 190 23 30 chrX 35210353 35210624 -141763516 + L1ME3A LINE L1 5222 5489 -675 2359 94 7 0 chrX 35210653 35210960 -141763180 - AluSq SINE Alu -4 309 1 2245 199 54 92 chrX 35211030 35211728 -141762412 + L1ME3A LINE L1 5493 6164 -6 2414 97 3 0 chrX 35211790 35212101 -141762039 + AluSx SINE Alu 1 312 0 2260 110 3 10 chrX 35212110 35212418 -141761722 + AluSq SINE Alu 1 306 -7 399 294 101 20 chrX 35212425 35212584 -141761556 + L1MC/D LINE L1 5296 5441 -680 814 43 0 17 chrX 35212584 35212701 -141761439 + (TCTCCC)n Simple_repeat Simple_repeat 1 115 0 6398 74 13 15 chrX 35212701 35214234 -141759906 + SVA Other Other 52 1386 0 399 294 101 20 chrX 35214234 35214391 -141759749 + L1MC/D LINE L1 5440 5645 -476 4271 94 9 105 chrX 35214427 35214774 -141759366 + L1PA13 LINE L1 5484 5722 -441 832 150 0 0 chrX 35214774 35214894 -141759246 + FLAM_C SINE Alu 1 120 -13 4271 94 9 105 chrX 35214894 35215298 -141758842 + L1PA13 LINE L1 5722 6163 0 231 274 111 8 chrX 35215329 35215446 -141758694 + L1MC/D LINE L1 5731 5859 -1949 621 305 10 0 chrX 35215473 35215676 -141758464 + MIR SINE MIR 58 262 0 195 242 0 0 chrX 35215685 35215747 -141758393 + (TTA)n Simple_repeat Simple_repeat 2 63 0 532 185 34 112 chrX 35216709 35216887 -141757253 - MIR SINE MIR 0 262 99 1560 135 12 11 chrX 35217152 35217424 -141756716 - L1MA5 LINE L1 -1 6290 6025 1538 179 13 99 chrX 35218537 35218911 -141755229 + MLT1A2 LTR MaLR 24 365 -9 348 187 0 110 chrX 35218925 35219016 -141755124 - MER92B LTR ERV1 -535 101 21 5292 165 36 40 chrX 35219224 35220920 -141753220 - L1MB5 LINE L1 0 6174 4486 2294 94 7 10 chrX 35220920 35221218 -141752922 - AluSx SINE Alu -15 297 1 5292 165 36 40 chrX 35221218 35221627 -141752513 - L1MB5 LINE L1 -1688 4486 4077 1974 196 48 53 chrX 35221699 35222245 -141751895 + LTR55 LTR ERV 1 543 -5 2439 35 0 11 chrX 35223477 35223759 -141750381 + AluY SINE Alu 1 279 -32 195 42 0 0 chrX 35223759 35223783 -141750357 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 966 260 84 54 chrX 35224473 35224973 -141749167 - MLT2B1 LTR ERVL -2 518 4 282 258 58 39 chrX 35225777 35225932 -141748208 + HERVL74 LTR ERVL 1805 1962 -3723 2382 78 10 3 chrX 35226230 35226536 -141747604 + AluSq SINE Alu 1 308 -5 295 311 44 40 chrX 35226752 35227004 -141747136 + HERVL74 LTR ERVL 2316 2695 -861 677 156 0 106 chrX 35228193 35228215 -141745925 - FLAM_C SINE Alu -172 130 107 2223 114 0 0 chrX 35228215 35228512 -141745628 + AluSx SINE Alu 1 297 -15 677 156 0 106 chrX 35228512 35228630 -141745510 - FLAM_C SINE Alu -195 107 5 1735 128 54 27 chrX 35230259 35230555 -141743585 + AluJo SINE Alu 1 304 -8 2080 122 14 0 chrX 35230685 35230973 -141743167 + AluSx SINE Alu 1 292 -20 265 289 0 0 chrX 35232144 35232220 -141741920 + MER66-int LTR ERV1 6115 6190 -486 1181 198 39 144 chrX 35232227 35232686 -141741454 - MER92A LTR ERV1 0 412 2 1763 127 74 18 chrX 35232978 35233116 -141741024 + AluJb SINE Alu 1 130 -182 2085 127 0 3 chrX 35233116 35233436 -141740704 + AluSx SINE Alu 1 319 0 1763 127 74 18 chrX 35233436 35233579 -141740561 + AluJb SINE Alu 130 299 -13 3512 59 5 0 chrX 35234311 35234752 -141739388 + L1PA8 LINE L1 5725 6167 -5 415 304 71 63 chrX 35235158 35235411 -141738729 - MER89-int LTR ERV1 -1447 5354 5105 7725 24 1 0 chrX 35235411 35236810 -141737330 - L1PA3 LINE L1 -5 6150 4746 415 304 71 63 chrX 35236810 35237176 -141736964 - MER89-int LTR ERV1 -1696 5105 2452 1620 140 117 15 chrX 35237230 35237495 -141736645 - AluJo SINE Alu -16 296 5 1161 225 64 50 chrX 35237714 35237908 -141736232 - MER89-int LTR ERV1 -1963 2973 2783 2247 106 0 7 chrX 35237908 35238211 -141735929 + AluSx SINE Alu 1 301 -11 1161 225 64 50 chrX 35238211 35238438 -141735702 - MER89-int LTR ERV1 -2153 2783 2546 3669 200 34 5 chrX 35238445 35239116 -141735024 - MER21B LTR ERV1 -130 733 43 413 230 0 0 chrX 35239116 35239190 -141734950 - MER21B LTR ERV1 -771 92 19 654 154 146 0 chrX 35239271 35239381 -141734759 + FLAM_C SINE Alu 3 128 -5 186 184 0 0 chrX 35239458 35239496 -141734644 + MIR SINE MIR 109 146 -62 944 202 76 42 chrX 35239676 35239914 -141734226 + L1ME2 LINE L1 5909 6154 -10 664 199 77 33 chrX 35240159 35240340 -141733800 - MER89-int LTR ERV1 -2745 2191 2003 5697 132 24 57 chrX 35240433 35240565 -141733575 - MER89-int LTR ERV1 -3492 1444 1309 2238 100 7 0 chrX 35240565 35240856 -141733284 - AluSq SINE Alu -19 294 2 5697 132 24 57 chrX 35240856 35241283 -141732857 - MER89-int LTR ERV1 -3627 1309 934 2584 47 0 28 chrX 35241283 35241602 -141732538 - AluY SINE Alu 0 311 2 5697 132 24 57 chrX 35241602 35242088 -141732052 - MER89-int LTR ERV1 -4002 934 433 768 133 11 155 chrX 35242703 35242942 -141731198 - MER92B LTR ERV1 -2 634 228 243 229 0 0 chrX 35242968 35243016 -141731124 - MER92A LTR ERV1 -363 49 2 658 113 99 119 chrX 35243316 35243467 -141730673 - FRAM SINE Alu -18 148 1 265 111 0 0 chrX 35243485 35243521 -141730619 + LTR55 LTR ERV 4 39 -509 285 79 0 0 chrX 35243559 35243597 -141730543 - LTR14 LTR ERVK -508 40 3 1965 186 59 40 chrX 35243603 35243698 -141730442 + LTR55 LTR ERV 32 124 -424 2277 103 3 0 chrX 35243698 35243998 -141730142 - AluSc SINE Alu -8 301 1 1965 186 59 40 chrX 35243998 35244407 -141729733 + LTR55 LTR ERV 124 546 -2 2478 176 2 61 chrX 35244409 35244936 -141729204 + MER77-int LTR ERV1 3641 4136 -55 2186 102 3 7 chrX 35244991 35245284 -141728856 + AluSx SINE Alu 1 292 -20 534 96 0 36 chrX 35245512 35245595 -141728545 - MADE1 DNA Mariner 0 80 1 835 218 0 6 chrX 35246747 35246912 -141727228 + AluSg/x SINE Alu 131 294 -18 3298 184 10 42 chrX 35247137 35247762 -141726378 + MER77 LTR ERV1 1 605 0 1722 105 0 4 chrX 35247887 35248115 -141726025 + AluSg/x SINE Alu 74 300 -10 2044 116 68 3 chrX 35248262 35248554 -141725586 + AluSx SINE Alu 1 311 -1 301 253 23 11 chrX 35249453 35249540 -141724600 + LTR2 LTR ERV1 41 128 -321 899 191 27 21 chrX 35249563 35249751 -141724389 + LTR2 LTR ERV1 261 449 0 2621 91 39 0 chrX 35249926 35250287 -141723853 - THE1C LTR MaLR 0 375 1 241 154 19 19 chrX 35250370 35250422 -141723718 - THE1B LTR MaLR -51 313 262 806 175 0 7 chrX 35250435 35250572 -141723568 + MLT1B LTR MaLR 255 390 0 1907 160 28 0 chrX 35250599 35250886 -141723254 - AluJb SINE Alu -17 295 1 397 276 134 46 chrX 35250898 35251137 -141723003 - L1MEd LINE L1 -5306 813 554 448 233 108 0 chrX 35251206 35251335 -141722805 + L2 LINE L2 2920 3062 -251 204 279 27 99 chrX 35251482 35251532 -141722608 + L2 LINE L2 3210 3249 -64 2342 93 0 3 chrX 35251532 35251842 -141722298 + AluSc SINE Alu 1 309 0 204 279 27 99 chrX 35251842 35251902 -141722238 + L2 LINE L2 3249 3312 -1 2314 73 0 11 chrX 35251914 35252230 -141721910 + AluY SINE Alu 1 313 0 2052 174 15 8 chrX 35252363 35252723 -141721417 - MLT1A1 LTR MaLR 0 365 2 352 289 75 66 chrX 35252787 35252897 -141721243 + L1MC4a LINE L1 290 398 -5721 1114 228 161 20 chrX 35252897 35253244 -141720896 + MSTD LTR MaLR 1 396 0 352 289 75 66 chrX 35253244 35253361 -141720779 + L1MC4a LINE L1 398 519 -5600 323 291 85 16 chrX 35253673 35253862 -141720278 + L1MC4a LINE L1 2964 3165 -2964 201 257 0 14 chrX 35254085 35254140 -141720000 + (TA)n Simple_repeat Simple_repeat 1 56 -17 2263 112 0 0 chrX 35254140 35254434 -141719706 + AluSx SINE Alu 1 294 -18 201 257 0 14 chrX 35254434 35254452 -141719688 + (TA)n Simple_repeat Simple_repeat 56 73 0 387 0 0 0 chrX 35256601 35256644 -141717496 + (CA)n Simple_repeat Simple_repeat 2 44 0 312 244 0 23 chrX 35256984 35257070 -141717070 + L1 LINE L1 4951 5034 -1112 1073 247 80 77 chrX 35257437 35257930 -141716210 + L1MC4a LINE L1 4778 4865 -1264 2115 111 77 17 chrX 35257930 35258283 -141715857 + THE1C LTR MaLR 1 374 -1 1073 247 80 77 chrX 35258283 35258807 -141715333 + L1MC4a LINE L1 4865 5386 -743 2170 119 0 0 chrX 35258808 35259103 -141715037 + AluSx SINE Alu 1 295 -17 1310 153 38 5 chrX 35259105 35259314 -141714826 + AluJb SINE Alu 84 299 -13 345 162 0 0 chrX 35259316 35259384 -141714756 + GA-rich Low_complexity Low_complexity 3 70 0 247 250 0 15 chrX 35259385 35259453 -141714687 + L1MC/D LINE L1 5819 5885 -1923 534 235 0 22 chrX 35259453 35259589 -141714551 - L2 LINE L2 -1 3312 3180 324 289 75 21 chrX 35259695 35259884 -141714256 + L1ME LINE L1 5322 5516 -650 2331 90 0 0 chrX 35259964 35260253 -141713887 + AluSx SINE Alu 1 289 -23 709 204 158 36 chrX 35260402 35260598 -141713542 + MIR SINE MIR 43 262 0 1731 153 14 89 chrX 35260755 35260832 -141713308 + MER58B DNA MER1_type 10 91 -2329 1809 150 7 4 chrX 35260832 35261106 -141713034 - AluJb SINE Alu -21 291 17 1731 153 14 89 chrX 35261106 35261387 -141712753 + MER58B DNA MER1_type 91 341 0 743 246 0 0 chrX 35261387 35261578 -141712562 + L1ME LINE L1 3383 3573 -2573 1119 78 0 0 chrX 35261578 35261720 -141712420 + AluSq/x SINE Alu 1 142 -171 452 158 0 13 chrX 35261720 35261819 -141712321 + AluJb SINE Alu 210 307 0 393 153 0 0 chrX 35261819 35261891 -141712249 + GA-rich Low_complexity Low_complexity 3 74 0 1171 92 0 0 chrX 35261911 35262064 -141712076 + AluSq SINE Alu 145 297 -16 532 255 65 0 chrX 35262064 35262248 -141711892 + L1ME LINE L1 3559 3754 -2392 277 241 74 46 chrX 35262281 35262389 -141711751 + L1MC5 LINE L1 7791 7901 -60 391 326 0 0 chrX 35263393 35263528 -141710612 + L1ME LINE L1 5617 5751 -370 477 204 79 86 chrX 35263580 35263859 -141710281 + L1MC5 LINE L1 7503 7779 -182 1084 167 191 8 chrX 35263897 35264143 -141709997 + AluJo SINE Alu 1 291 -11 1595 148 11 4 chrX 35264145 35264415 -141709725 + AluSq SINE Alu 1 272 -41 852 156 16 4 chrX 35264418 35264670 -141709470 + GA-rich Low_complexity Low_complexity 1 255 0 476 189 7 95 chrX 35264674 35264708 -141709432 + L1MC5 LINE L1 7779 7814 -147 1301 191 38 55 chrX 35264708 35265054 -141709086 - MER58B DNA MER1_type -1 340 1 476 189 7 95 chrX 35265054 35265167 -141708973 + L1MC5 LINE L1 7814 7913 -48 1933 148 6 3 chrX 35265315 35265626 -141708514 + AluJb SINE Alu 1 312 0 1380 162 49 16 chrX 35265650 35265710 -141708430 + MER106B DNA MER1_type 1 58 -1001 233 29 0 29 chrX 35265710 35265745 -141708395 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1380 162 49 16 chrX 35265745 35265931 -141708209 + MER106B DNA MER1_type 58 255 -804 500 250 59 7 chrX 35265934 35266070 -141708070 - MIR SINE MIR -60 202 60 2492 48 0 3 chrX 35266206 35266518 -141707622 - AluY SINE Alu 0 311 1 487 238 56 53 chrX 35266558 35266689 -141707451 + L1ME LINE L1 5150 5279 -883 2184 99 0 7 chrX 35266689 35266993 -141707147 + AluSx SINE Alu 1 302 -10 487 238 56 53 chrX 35266993 35267144 -141706996 + L1ME LINE L1 5279 5435 -727 1884 155 3 0 chrX 35268889 35269193 -141704947 + AluSx SINE Alu 1 305 -7 876 133 0 0 chrX 35269204 35269332 -141704808 + FLAM_C SINE Alu 1 128 -5 1245 176 31 0 chrX 35269482 35269704 -141704436 + AluSx SINE Alu 2 230 -82 1237 198 84 65 chrX 35270118 35270441 -141703699 - MLT1D LTR MaLR 0 505 177 276 53 0 0 chrX 35270449 35270487 -141703653 + (GA)n Simple_repeat Simple_repeat 1 38 0 1382 165 12 8 chrX 35270488 35270633 -141703507 - AluJo SINE Alu -31 281 133 2373 78 0 0 chrX 35270633 35270939 -141703201 - AluY SINE Alu -5 306 1 1382 165 12 8 chrX 35270939 35271041 -141703099 - AluJo SINE Alu -179 133 33 258 80 60 80 chrX 35271042 35271092 -141703048 - MLT1D LTR MaLR -316 189 141 1058 134 58 6 chrX 35271092 35271263 -141702877 - MLT1D LTR MaLR -325 180 1 2125 100 0 0 chrX 35271634 35271944 -141702196 + AluSc SINE Alu 1 310 0 1856 146 11 0 chrX 35271979 35272266 -141701874 + AluJo SINE Alu 1 290 -22 2075 124 13 0 chrX 35272561 35272867 -141701273 + AluSx SINE Alu 3 312 0 1538 202 65 14 chrX 35273086 35273442 -141700698 + MLT1A2 LTR MaLR 1 374 0 816 173 0 0 chrX 35273607 35273740 -141700400 + AluJo SINE Alu 2 134 -178 24 0 0 0 chrX 35273740 35273764 -141700376 + AT_rich Low_complexity Low_complexity 1 24 0 327 297 0 0 chrX 35273802 35273876 -141700264 - MER5A DNA MER1_type -53 136 63 1704 166 63 120 chrX 35273886 35274095 -141700045 - L1MC4 LINE L1 -2 8040 7821 8596 67 4 3 chrX 35274095 35275165 -141698975 + MER11C LTR ERVK 1 1071 0 1735 177 0 3 chrX 35275171 35275481 -141698659 + AluJb SINE Alu 1 309 -3 1704 166 63 120 chrX 35275481 35275619 -141698521 - L1MC4 LINE L1 -226 7816 7672 2042 126 0 7 chrX 35275619 35275921 -141698219 + AluSq SINE Alu 1 300 -13 1704 166 63 120 chrX 35275921 35276148 -141697992 - L1MC4 LINE L1 -370 7672 7491 1083 183 26 17 chrX 35276119 35276349 -141697791 - L1MC4a LINE L1 -1217 6591 6360 * 822 151 0 22 chrX 35276349 35276488 -141697652 + FLAM_C SINE Alu 2 137 -6 1172 170 52 116 chrX 35276488 35276893 -141697247 - L1MC4a LINE L1 -1437 6371 5993 298 0 23 23 chrX 35277304 35277347 -141696793 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 1204 79 17 0 chrX 35277349 35277526 -141696614 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2030 98 7 4 chrX 35277531 35277808 -141696332 - AluSx SINE Alu -34 278 1 688 203 98 0 chrX 35277911 35278074 -141696066 + LTR47A LTR ERVL 274 452 0 549 211 0 0 chrX 35278113 35278217 -141695923 + U13 snRNA snRNA 1 104 0 273 302 9 0 chrX 35278265 35278371 -141695769 + HERVL32 LTR ERVL 81 187 -3231 1508 346 61 61 chrX 35280003 35281167 -141692973 + HERVL32 LTR ERVL 1721 2884 -2459 2378 218 79 72 chrX 35281167 35281987 -141692153 - LTR1B LTR ERV1 0 826 1 1508 346 61 61 chrX 35281987 35282882 -141691258 + HERVL32 LTR ERVL 2884 3677 -1666 1804 124 96 37 chrX 35282882 35283236 -141690904 + THE1C LTR MaLR 1 375 0 1508 346 61 61 chrX 35283236 35283643 -141690497 + HERVL32 LTR ERVL 3677 4083 -1260 2028 119 0 30 chrX 35283660 35283963 -141690177 + AluSx SINE Alu 1 294 -18 2688 136 34 0 chrX 35283983 35284396 -141689744 - MSTA LTR MaLR -1 427 1 2006 85 30 20 chrX 35284781 35285076 -141689064 + L1PA15 LINE L1 5865 6162 -3 324 302 0 87 chrX 35285775 35285835 -141688305 + PABL_B-int LTR ERV1 5633 5697 -1425 2361 93 0 0 chrX 35285835 35286147 -141687993 + AluSx SINE Alu 1 312 0 324 302 0 87 chrX 35286147 35286235 -141687905 + PABL_B-int LTR ERV1 5697 5768 -1354 612 164 0 57 chrX 35286435 35286557 -141687583 + PABL_B-int LTR ERV1 5968 6082 -676 903 153 90 6 chrX 35286802 35286979 -141687161 + LTR47A LTR ERVL 261 452 0 1011 76 6 13 chrX 35287059 35287216 -141686924 + (TTTC)n Simple_repeat Simple_repeat 3 158 0 1764 151 4 0 chrX 35287221 35287500 -141686640 - AluSq SINE Alu -33 280 1 1893 118 29 38 chrX 35288094 35288409 -141685731 + AluSx SINE Alu 1 312 0 237 108 0 0 chrX 35288409 35288446 -141685694 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 798 243 6 0 chrX 35289679 35289848 -141684292 - LTR65 LTR ERV1 -12 657 488 1286 163 19 0 chrX 35289935 35290150 -141683990 - MER20 DNA MER1_type 0 219 1 1762 129 0 52 chrX 35290309 35290645 -141683495 + AluSx SINE Alu 1 320 0 1886 146 3 0 chrX 35290650 35290944 -141683196 + AluSx SINE Alu 1 295 -17 1536 194 20 12 chrX 35290947 35291292 -141682848 + L1MD3 LINE L1 4382 4729 -1417 237 108 0 0 chrX 35291976 35292013 -141682127 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 1893 118 29 38 chrX 35292013 35292328 -141681812 - AluSx SINE Alu 0 312 1 1833 209 64 38 chrX 35292932 35293128 -141681012 + L1MD3 LINE L1 5130 5319 -1015 2151 92 7 0 chrX 35293128 35293423 -141680717 + AluSp SINE Alu 1 297 -16 1833 209 64 38 chrX 35293423 35293574 -141680566 + L1MD3 LINE L1 5319 5465 -869 1580 151 72 4 chrX 35293574 35293852 -141680288 + AluJb SINE Alu 1 297 -15 1833 209 64 38 chrX 35293852 35294262 -141679878 + L1MD3 LINE L1 5465 5863 -471 1891 124 13 0 chrX 35294262 35294560 -141679580 - AluSx SINE Alu -10 302 1 1833 209 64 38 chrX 35294560 35294782 -141679358 + L1MD3 LINE L1 5863 6334 0 815 129 23 0 chrX 35294856 35294988 -141679152 + AluJo SINE Alu 1 135 -177 2051 97 0 83 chrX 35295044 35295383 -141678757 - AluSx SINE Alu 0 312 2 2104 122 0 0 chrX 35295528 35295824 -141678316 - AluSx SINE Alu -16 296 1 896 151 0 0 chrX 35295949 35296088 -141678052 - FLAM_C SINE Alu -4 139 1 940 119 0 15 chrX 35296222 35296356 -141677784 - FLAM_C SINE Alu -1 132 1 271 318 106 37 chrX 35296650 35296867 -141677273 + MIR SINE MIR 15 246 -16 610 275 113 18 chrX 35296891 35297113 -141677027 - MIR SINE MIR 0 262 20 2785 91 3 3 chrX 35297115 35297479 -141676661 - THE1B LTR MaLR 0 364 1 670 221 45 50 chrX 35297592 35297750 -141676390 + MLT1D LTR MaLR 1 157 -348 2462 181 36 61 chrX 35297750 35298304 -141675836 - MLT2B3 LTR ERVL 0 554 15 993 174 45 147 chrX 35298342 35298473 -141675667 + MLT1D LTR MaLR 149 292 -213 2546 122 57 10 chrX 35298473 35298876 -141675264 + MSTB LTR MaLR 1 422 -4 993 174 45 147 chrX 35298876 35298959 -141675181 + MLT1D LTR MaLR 292 382 -123 1847 155 0 7 chrX 35298959 35299263 -141674877 + AluJb SINE Alu 11 312 0 993 174 45 147 chrX 35299263 35299443 -141674697 + MLT1D LTR MaLR 382 504 -1 2331 232 84 105 chrX 35299445 35299749 -141674391 + MLT1D-int LTR MaLR 2 311 -1060 2129 82 0 7 chrX 35299749 35300031 -141674109 + AluSp SINE Alu 1 280 -33 2331 232 84 105 chrX 35300031 35301126 -141673014 + MLT1D-int LTR MaLR 311 1371 0 780 218 32 50 chrX 35301126 35301221 -141672919 + MLT1D LTR MaLR 1 96 -409 1892 96 92 0 chrX 35301221 35301493 -141672647 + AluSg1 SINE Alu 1 297 -12 780 218 32 50 chrX 35301493 35301617 -141672523 + MLT1D LTR MaLR 96 216 -289 1291 217 66 30 chrX 35301629 35301980 -141672160 + MSTD LTR MaLR 1 396 0 1223 193 16 11 chrX 35301986 35302016 -141672124 + MLT1D LTR MaLR 224 252 -253 1663 123 138 35 chrX 35302016 35302356 -141671784 - THE1C LTR MaLR 0 375 1 1223 193 16 11 chrX 35302356 35302576 -141671564 + MLT1D LTR MaLR 252 499 -6 689 163 0 47 chrX 35302699 35302828 -141671312 + FLAM_C SINE Alu 2 124 -19 26 0 0 0 chrX 35302828 35302854 -141671286 + AT_rich Low_complexity Low_complexity 1 26 0 733 301 10 5 chrX 35302860 35303053 -141671087 + MIR SINE MIR 19 212 -50 638 168 0 77 chrX 35303383 35303526 -141670614 - FLAM_C SINE Alu 0 133 2 1216 148 32 115 chrX 35303535 35303874 -141670266 - AluJo SINE Alu -1 311 1 344 158 384 62 chrX 35304544 35304690 -141669450 - AluJo SINE Alu -105 197 5 874 173 211 42 chrX 35304699 35304959 -141669181 - AluJo SINE Alu -4 308 5 893 172 195 38 chrX 35304963 35305107 -141669033 - AluJb SINE Alu 0 312 192 293 0 27 0 chrX 35305107 35305144 -141668996 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 893 172 195 38 chrX 35305144 35305266 -141668874 - AluJb SINE Alu -120 192 4 559 146 107 0 chrX 35305295 35305398 -141668742 - FLAM_A SINE Alu -16 117 4 212 0 36 0 chrX 35305405 35305433 -141668707 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1059 139 0 88 chrX 35305470 35305708 -141668432 - AluJo SINE Alu -95 217 1 1654 156 3 10 chrX 35307290 35307579 -141666561 - AluJo SINE Alu -25 287 1 208 0 0 59 chrX 35308065 35308099 -141666041 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1993 105 4 0 chrX 35308103 35308380 -141665760 - AluSq SINE Alu -35 278 1 304 115 96 0 chrX 35309182 35309234 -141664906 - L1MB7 LINE L1 -28 6156 6100 334 258 0 11 chrX 35309800 35309889 -141664251 - MIR SINE MIR -34 228 141 261 338 0 0 chrX 35309930 35310001 -141664139 + MIR SINE MIR 79 149 -113 188 286 79 0 chrX 35310050 35310113 -141664027 - MIR SINE MIR -128 134 67 2091 102 0 0 chrX 35310646 35310940 -141663200 + AluSc SINE Alu 1 294 -15 6647 54 9 60 chrX 35310986 35312725 -141661415 + SVA Other Other 13 1386 0 194 255 0 20 chrX 35313254 35313305 -141660835 + MIR SINE MIR 163 212 -50 309 292 71 18 chrX 35313695 35313808 -141660332 + MIR SINE MIR 79 197 -65 2947 114 59 13 chrX 35313910 35314365 -141659775 - Tigger1 DNA MER2_type 0 2418 1943 * 5412 102 21 93 chrX 35314358 35315182 -141658958 - Tigger1 DNA MER2_type -1377 1041 209 1492 84 14 5 chrX 35315182 35315395 -141658745 + L1MA2 LINE L1 6089 6303 -1 5412 102 21 93 chrX 35315395 35315590 -141658550 - Tigger1 DNA MER2_type -2209 209 1 218 32 32 0 chrX 35316863 35316894 -141657246 + (CA)n Simple_repeat Simple_repeat 2 33 0 417 227 6 3 chrX 35317066 35317164 -141656976 - L1ME LINE L1 -424 5697 5598 297 255 112 10 chrX 35317171 35317269 -141656871 - L2 LINE L2 -22 3291 3184 324 0 0 0 chrX 35317285 35317321 -141656819 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 904 154 20 7 chrX 35317322 35317471 -141656669 - FRAM SINE Alu -15 151 1 300 303 53 38 chrX 35318070 35318202 -141655938 - MIR SINE MIR -97 165 32 2130 99 0 0 chrX 35319002 35319296 -141654844 - AluSg SINE Alu -14 296 3 1230 224 0 0 chrX 35319316 35319570 -141654570 - AluJo SINE Alu -23 289 36 1835 153 0 0 chrX 35319570 35319858 -141654282 + AluSx SINE Alu 2 289 -23 225 94 0 0 chrX 35319863 35319895 -141654245 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 540 297 126 21 chrX 35319963 35320249 -141653891 + MER65-int LTR ERV1 4555 4870 -1 1938 109 3 7 chrX 35320283 35320576 -141653564 + AluSx SINE Alu 1 292 -20 356 292 23 15 chrX 35320807 35320937 -141653203 - L1 LINE L1 -1721 4425 4295 1717 154 13 19 chrX 35321007 35321319 -141652821 + AluSx SINE Alu 1 310 -2 2029 139 0 0 chrX 35321886 35322196 -141651944 + AluSg SINE Alu 1 310 0 1004 216 72 5 chrX 35322299 35322521 -141651619 - MER67C LTR ERV1 -282 428 192 548 167 0 56 chrX 35322523 35322631 -141651509 + AluJb SINE Alu 3 104 -208 338 218 194 24 chrX 35322641 35322765 -141651375 - MER67C LTR ERV1 -565 145 1 1792 154 3 3 chrX 35322921 35323214 -141650926 - AluSq SINE Alu -20 293 1 1078 158 15 10 chrX 35323296 35323498 -141650642 - MER65C LTR ERV1 0 461 259 296 42 0 42 chrX 35324084 35324132 -141650008 + L1PA3 LINE L1 6107 6152 -3 25 0 0 0 chrX 35324133 35324158 -141649982 + AT_rich Low_complexity Low_complexity 1 25 0 689 38 0 0 chrX 35324747 35324827 -141649313 - U6 snRNA snRNA -27 80 1 1986 120 0 0 chrX 35324922 35325239 -141648901 + AluSq SINE Alu 2 318 0 451 161 12 12 chrX 35325595 35325676 -141648464 - L1M4 LINE L1 -6308 234 154 730 120 25 13 chrX 35325677 35325835 -141648305 + CT-rich Low_complexity Low_complexity 3 162 0 611 197 17 0 chrX 35325838 35325955 -141648185 - AluSg/x SINE Alu 0 309 191 264 119 0 0 chrX 35325958 35326000 -141648140 + AluJo/FLAM SINE Alu 66 107 -195 842 184 112 15 chrX 35326000 35326196 -141647944 + AluJb SINE Alu 6 220 -92 286 109 0 36 chrX 35326196 35326251 -141647889 + FAM SINE Alu 127 179 0 609 188 141 47 chrX 35326266 35326458 -141647682 + AluJo SINE Alu 3 212 -100 273 315 46 19 chrX 35327700 35327808 -141646332 + MIR SINE MIR 79 189 -73 2721 144 48 9 chrX 35327908 35328365 -141645775 - Tigger1 DNA MER2_type -1 2417 1943 * 5104 146 69 50 chrX 35328360 35329184 -141644956 - Tigger1 DNA MER2_type -1379 1039 191 1364 104 19 5 chrX 35329184 35329396 -141644744 + L1MA2 LINE L1 6090 6304 0 5104 146 69 50 chrX 35329396 35329591 -141644549 - Tigger1 DNA MER2_type -2227 191 1 1848 111 0 27 chrX 35330170 35330467 -141643673 - AluY SINE Alu -19 292 4 532 294 80 116 chrX 35332095 35332493 -141641647 - L2 LINE L2 -2 3270 2887 186 233 217 0 chrX 35333125 35333185 -141640955 - MIR SINE MIR -63 145 73 2598 122 16 0 chrX 35333344 35333728 -141640412 - Tigger1 DNA MER2_type -86 2332 1943 * 4859 135 16 87 chrX 35333723 35334547 -141639593 - Tigger1 DNA MER2_type -1379 1039 204 1397 91 34 0 chrX 35334547 35334756 -141639384 + L1MA2 LINE L1 6089 6304 0 4859 135 16 87 chrX 35334756 35334946 -141639194 - Tigger1 DNA MER2_type -2214 204 2 1835 156 7 0 chrX 35335509 35335810 -141638330 - AluSg SINE Alu -5 305 3 275 0 29 0 chrX 35336523 35336558 -141637582 + (CA)n Simple_repeat Simple_repeat 2 37 0 351 221 0 0 chrX 35336736 35336813 -141637327 - L1ME LINE L1 -430 5691 5615 382 277 10 10 chrX 35336815 35336916 -141637224 - L2 LINE L2 -2 3311 3211 270 0 0 0 chrX 35336942 35336972 -141637168 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 882 173 36 18 chrX 35336978 35337146 -141636994 - AluJo SINE Alu -30 282 112 298 308 8 60 chrX 35337708 35337841 -141636299 - MIR SINE MIR -88 174 49 509 176 44 0 chrX 35338890 35338981 -141635159 - MSTC LTR MaLR -333 95 1 804 196 36 50 chrX 35338993 35339117 -141635023 - MLT1D LTR MaLR -289 216 95 2146 101 3 3 chrX 35339117 35339414 -141634726 - AluSg SINE Alu -13 297 1 804 196 36 50 chrX 35339414 35339508 -141634632 - MLT1D LTR MaLR -410 95 1 1609 210 23 84 chrX 35339508 35339946 -141634194 - MLT1D-int LTR MaLR 0 1371 961 828 226 67 108 chrX 35339954 35340268 -141633872 - MLT1D-int LTR MaLR -574 797 497 329 313 33 42 chrX 35340326 35340540 -141633600 + MER83B-int LTR ERV1 2950 3161 -1719 1998 114 0 60 chrX 35340617 35340949 -141633191 - AluSx SINE Alu 0 312 1 1042 231 109 0 chrX 35341167 35341405 -141632735 - MER65-int LTR ERV1 -816 4055 3792 894 146 156 42 chrX 35341405 35341597 -141632543 + MER4B LTR ERV1 1 214 -396 1944 125 0 7 chrX 35341602 35341907 -141632233 + AluSc SINE Alu 3 305 -4 467 138 11 0 chrX 35342016 35342103 -141632037 + (CA)n Simple_repeat Simple_repeat 2 89 0 420 216 6 3 chrX 35342269 35342367 -141631773 - L1ME LINE L1 -424 5697 5598 309 255 112 10 chrX 35342374 35342472 -141631668 - L2 LINE L2 -22 3291 3184 1680 169 17 0 chrX 35342489 35342785 -141631355 - AluJo SINE Alu -11 301 1 307 290 57 40 chrX 35343386 35343510 -141630630 - MIR SINE MIR -105 157 32 1531 176 3 22 chrX 35344298 35344611 -141629529 - AluJb SINE Alu -5 307 1 1696 113 18 14 chrX 35344840 35345122 -141629018 + AluSx SINE Alu 1 283 -29 1895 134 13 19 chrX 35345555 35345869 -141628271 + AluSx SINE Alu 1 312 0 933 138 7 0 chrX 35346496 35346641 -141627499 + AluSg SINE Alu 2 147 -163 474 189 19 28 chrX 35346971 35347077 -141627063 - MER65C LTR ERV1 0 461 357 228 294 55 37 chrX 35347242 35347351 -141626789 - MIR SINE MIR -73 189 79 217 366 0 0 chrX 35348663 35348734 -141625406 - MIR SINE MIR -113 149 79 359 209 35 12 chrX 35348775 35348861 -141625279 + MIR SINE MIR 141 228 -34 352 100 100 0 chrX 35349435 35349495 -141624645 + L1MB7 LINE L1 6091 6156 -28 1829 144 0 3 chrX 35350302 35350601 -141623539 + AluSq SINE Alu 5 302 -11 1381 184 4 11 chrX 35350820 35351098 -141623042 + AluJo SINE Alu 1 276 -36 570 29 0 0 chrX 35351110 35351178 -141622962 + (GAAA)n Simple_repeat Simple_repeat 3 70 0 834 174 29 17 chrX 35352148 35352320 -141621820 + AluSq SINE Alu 121 294 -19 472 190 234 38 chrX 35352489 35352647 -141621493 + MER67C LTR ERV1 17 205 -505 571 122 0 0 chrX 35352650 35352732 -141621408 - AluJ/FLAM SINE Alu -229 83 2 989 215 72 5 chrX 35352733 35352956 -141621184 + MER67C LTR ERV1 192 429 -281 1777 157 3 0 chrX 35353069 35353362 -141620778 - AluSg SINE Alu -16 294 1 1782 145 16 19 chrX 35353954 35354264 -141619876 - AluSx SINE Alu -1 311 3 189 0 0 0 chrX 35354272 35354293 -141619847 + (T)n Simple_repeat Simple_repeat 1 21 0 1740 131 3 7 chrX 35354707 35354990 -141619150 - AluSx SINE Alu -27 285 4 1655 188 0 0 chrX 35355221 35355519 -141618621 + AluJo SINE Alu 1 298 -14 1732 152 0 0 chrX 35355533 35355840 -141618300 + AluY SINE Alu 6 312 0 588 129 12 0 chrX 35355979 35356064 -141618076 - AluSg1 SINE Alu -222 87 2 2595 189 80 35 chrX 35356070 35356564 -141617576 - L1MC/D LINE L1 -537 5822 5352 1728 136 19 35 chrX 35356564 35356880 -141617260 - AluSx SINE Alu -1 311 1 2595 189 80 35 chrX 35356880 35357478 -141616662 - L1MC/D LINE L1 -1007 5352 4676 1873 128 0 3 chrX 35357486 35357774 -141616366 - AluSx SINE Alu -24 288 2 275 272 87 55 chrX 35357830 35358139 -141616001 + L1M4 LINE L1 4789 5107 -1039 2447 103 0 0 chrX 35559178 35559490 -141414650 - AluSx SINE Alu 0 312 1 1312 191 77 4 chrX 35559490 35559762 -141414378 - AluJo SINE Alu -20 292 1 2523 67 0 0 chrX 35559790 35560088 -141414052 + AluY SINE Alu 1 298 -13 455 280 77 7 chrX 35560109 35560252 -141413888 - L1MEc LINE L1 -4096 2300 2148 37 23 0 0 chrX 35560684 35560728 -141413412 + AT_rich Low_complexity Low_complexity 1 44 0 1144 89 0 0 chrX 35560728 35560863 -141413277 + AluSq/x SINE Alu 1 135 -177 2350 90 0 0 chrX 35560863 35561153 -141412987 + AluSg SINE Alu 1 290 -20 1847 159 0 20 chrX 35561216 35561512 -141412628 - AluJo SINE Alu -22 290 1 252 292 292 0 chrX 35561672 35561785 -141412355 + MIR SINE MIR 117 262 0 379 291 87 67 chrX 35561789 35561891 -141412249 - L1MC4a LINE L1 -1865 5943 5844 1878 141 0 39 chrX 35561891 35562196 -141411944 - AluJo SINE Alu -19 293 1 379 291 87 67 chrX 35562196 35562322 -141411818 - L1MC4a LINE L1 -1964 5844 5707 2373 104 0 7 chrX 35562322 35562631 -141411509 + AluSq SINE Alu 1 307 -6 379 291 87 67 chrX 35562631 35562655 -141411485 - L1MC4a LINE L1 -2101 5707 5685 752 193 20 25 chrX 35562669 35562848 -141411292 - L1MC4a LINE L1 -687 5483 5304 1795 167 40 3 chrX 35562848 35563148 -141410992 - AluJo SINE Alu 0 312 2 752 193 20 25 chrX 35563148 35563165 -141410975 - L1MC4a LINE L1 -866 5304 5288 266 351 66 20 chrX 35563272 35563423 -141410717 - MIR SINE MIR -11 251 94 2063 148 0 0 chrX 35564133 35564423 -141409717 - AluJb SINE Alu -22 290 1 896 158 79 0 chrX 35565439 35565603 -141408537 - MLT1B LTR MaLR -12 378 202 1790 155 11 3 chrX 35565649 35565933 -141408207 - AluJb SINE Alu -6 306 21 2387 102 3 0 chrX 35565951 35566255 -141407885 - AluSp SINE Alu -7 306 2 822 181 0 0 chrX 35566259 35566392 -141407748 - FLAM_A SINE Alu 0 133 1 563 167 220 23 chrX 35566421 35566553 -141407587 + AluJb SINE Alu 83 240 -72 1971 134 39 11 chrX 35566599 35566883 -141407257 + AluSx SINE Alu 1 292 -20 962 139 13 6 chrX 35566888 35567046 -141407094 - MLT1B LTR MaLR -231 159 1 276 194 45 15 chrX 35567051 35567118 -141407022 - MLT1A1-int LTR MaLR -2 1733 1665 492 158 0 0 chrX 35567123 35567205 -141406935 - AluSg/x SINE Alu -13 296 215 716 157 0 0 chrX 35567205 35567313 -141406827 - AluSq/x SINE Alu -199 113 6 3164 205 46 89 chrX 35567331 35567568 -141406572 - MLT1A1-int LTR MaLR -81 1290 1044 1943 158 0 0 chrX 35567568 35567859 -141406281 + AluJb SINE Alu 3 293 -19 3164 205 46 89 chrX 35567859 35568721 -141405419 - MLT1A1-int LTR MaLR -327 1044 132 1749 144 111 15 chrX 35568721 35569054 -141405086 - MLT1A1 LTR MaLR 0 365 1 3164 205 46 89 chrX 35569054 35569181 -141404959 - MLT1A1-int LTR MaLR -1239 132 1 1935 175 48 13 chrX 35569181 35569558 -141404582 - MLT1B LTR MaLR 0 390 1 1624 182 30 69 chrX 35570341 35570747 -141403393 - MLT1B LTR MaLR 0 390 1 2257 101 0 10 chrX 35571611 35571908 -141402232 + AluSq SINE Alu 1 294 -19 327 301 65 13 chrX 35571997 35572150 -141401990 + L2 LINE L2 2798 2958 -356 387 248 45 45 chrX 35572163 35572235 -141401905 + MIR SINE MIR 86 160 -102 1529 153 78 98 chrX 35572235 35572608 -141401532 + MSTC LTR MaLR 1 365 -63 1536 172 23 8 chrX 35572608 35572870 -141401270 - AluJo SINE Alu -9 303 38 1529 153 78 98 chrX 35572870 35572933 -141401207 + MSTC LTR MaLR 365 428 0 387 248 45 45 chrX 35572933 35572993 -141401147 + MIR SINE MIR 159 218 -44 184 265 0 0 chrX 35573040 35573089 -141401051 + L2 LINE L2 2601 2649 -665 2490 63 0 16 chrX 35573556 35573871 -141400269 - AluY SINE Alu -1 310 1 1908 157 0 17 chrX 35574101 35574401 -141399739 - AluJo SINE Alu -17 295 1 350 278 103 24 chrX 35574506 35574632 -141399508 + LTR33 LTR ERVL 3 138 -383 335 158 12 37 chrX 35575059 35575141 -141398999 - L1ME3A LINE L1 -5 6165 6086 1904 125 10 7 chrX 35575195 35575484 -141398656 - AluJo SINE Alu -22 290 1 2050 134 3 7 chrX 35575509 35575808 -141398332 + AluJo SINE Alu 3 300 -12 639 279 70 12 chrX 35576922 35577166 -141396974 - L2 LINE L2 -246 3067 2810 238 342 13 0 chrX 35577196 35577272 -141396868 - L2 LINE L2 -685 2629 2553 191 308 26 0 chrX 35577346 35577424 -141396716 - L2 LINE L2 -273 2999 2920 255 263 13 0 chrX 35577721 35577797 -141396343 + L2 LINE L2 2790 2866 -448 1852 109 64 36 chrX 35578103 35578244 -141395896 + MER44D DNA MER2_type 1 137 -2354 2162 131 19 38 chrX 35578244 35578534 -141395606 + MER47A DNA MER2_type 1 295 -2028 1705 123 99 44 chrX 35578534 35578683 -141395457 - AluSx SINE Alu -3 309 170 2289 113 3 0 chrX 35578683 35578985 -141395155 - AluSq SINE Alu -10 303 1 1842 138 87 7 chrX 35578993 35579282 -141394858 - AluSx SINE Alu 0 312 1 1705 123 99 44 chrX 35579282 35579416 -141394724 - AluSx SINE Alu -148 164 1 2162 131 19 38 chrX 35579416 35579498 -141394642 + MER47A DNA MER2_type 295 366 0 1852 109 64 36 chrX 35579498 35579686 -141394454 + MER44D DNA MER2_type 137 609 0 553 226 19 138 chrX 35579689 35579764 -141394376 - L1MC/D LINE L1 -2143 5665 5583 2309 83 7 3 chrX 35579764 35580052 -141394088 - AluSc SINE Alu -20 289 1 553 226 19 138 chrX 35580052 35580120 -141394020 - L1MC/D LINE L1 -2225 5583 5564 2518 68 0 0 chrX 35580120 35580416 -141393724 + AluY SINE Alu 1 296 -15 553 226 19 138 chrX 35580416 35580532 -141393608 - L1MC/D LINE L1 -2244 5564 5436 2376 96 0 10 chrX 35580837 35581138 -141393002 - AluSx SINE Alu -14 298 1 259 267 41 82 chrX 35581675 35581821 -141392319 + MIR SINE MIR 113 252 -10 204 279 44 0 chrX 35581999 35582067 -141392073 + (TTCA)n Simple_repeat Simple_repeat 2 72 0 728 237 77 55 chrX 35582150 35582226 -141391914 + L1MC4 LINE L1 7704 7777 -265 1406 164 95 78 chrX 35582226 35582446 -141391694 - MLT1A1 LTR MaLR 0 365 150 2442 86 0 10 chrX 35582446 35582747 -141391393 + AluSx SINE Alu 2 299 -13 2593 71 0 0 chrX 35582749 35583060 -141391080 + AluY SINE Alu 1 311 0 1406 164 95 78 chrX 35583060 35583195 -141390945 - MLT1A1 LTR MaLR -215 150 1 728 237 77 55 chrX 35583195 35583443 -141390697 + L1MC4 LINE L1 7777 8035 -7 821 225 72 36 chrX 35583536 35583785 -141390355 - MIR SINE MIR -1 261 4 224 170 19 19 chrX 35583824 35583877 -141390263 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 295 278 52 0 chrX 35583926 35584023 -141390117 + MIR SINE MIR 65 166 -96 2469 76 0 3 chrX 35584172 35584473 -141389667 + AluSx SINE Alu 1 300 -12 444 278 41 115 chrX 35584510 35584630 -141389510 - L1MC/D LINE L1 -1312 4834 4743 2132 142 0 0 chrX 35584630 35584933 -141389207 - AluJb SINE Alu -9 303 1 444 278 41 115 chrX 35584933 35585082 -141389058 - L1MC/D LINE L1 -1403 4743 4585 1846 143 50 0 chrX 35585573 35585853 -141388287 - AluJb SINE Alu -18 294 1 2158 114 4 0 chrX 35586038 35586318 -141387822 - AluSq SINE Alu -32 281 1 2271 133 0 0 chrX 35586495 35586804 -141387336 - AluSq SINE Alu -4 309 1 356 294 11 53 chrX 35586806 35586993 -141387147 - L1M4 LINE L1 -1226 4920 4742 1293 35 0 0 chrX 35586997 35587140 -141387000 - AluY SINE Alu -15 296 154 264 258 60 40 chrX 35587154 35587179 -141386961 - L1M4 LINE L1 -1430 4716 4693 2535 74 0 0 chrX 35587179 35587476 -141386664 - AluY SINE Alu -14 297 1 264 258 60 40 chrX 35587476 35587601 -141386539 - L1M4 LINE L1 -1453 4693 4563 805 196 15 49 chrX 35587617 35587821 -141386319 - MER46C DNA MER2_type -66 272 76 236 77 26 0 chrX 35587834 35587873 -141386267 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2235 79 4 0 chrX 35587876 35588142 -141385998 - AluSc SINE Alu -42 267 1 2168 92 27 20 chrX 35588142 35588437 -141385703 - AluSg SINE Alu -13 297 1 468 307 62 11 chrX 35588468 35588647 -141385493 - L1M4 LINE L1 -3728 2418 2231 1287 103 0 0 chrX 35588706 35588871 -141385269 - AluSg/x SINE Alu -14 296 132 2342 94 10 0 chrX 35588871 35589168 -141384972 - AluY SINE Alu -11 300 1 2244 125 0 0 chrX 35589311 35589607 -141384533 - AluSx SINE Alu -16 296 1 202 77 96 0 chrX 35589741 35589793 -141384347 + (TA)n Simple_repeat Simple_repeat 1 57 0 387 310 83 45 chrX 35589884 35590126 -141384014 - HAL1 LINE L1 -824 1683 1433 1858 132 14 24 chrX 35590128 35590416 -141383724 - AluJb SINE Alu -2 310 26 2423 92 0 0 chrX 35590416 35590710 -141383430 + AluSx SINE Alu 1 294 -18 259 138 0 102 chrX 35590711 35590770 -141383370 - AluJb SINE Alu -266 36 1 2294 106 0 32 chrX 35590785 35591096 -141383044 + AluSx SINE Alu 1 301 -11 383 305 28 7 chrX 35591166 35591307 -141382833 - HAL1 LINE L1 -1187 1320 1177 844 277 66 25 chrX 35591419 35591813 -141382327 - L2 LINE L2 -594 2720 2311 231 233 17 0 chrX 35591918 35591978 -141382162 - MLT1J LTR MaLR -45 466 406 402 77 0 0 chrX 35591988 35592040 -141382100 + AluSx SINE Alu 1 52 -248 4209 180 28 57 chrX 35592040 35593038 -141381102 - LTR5 LTR ERVK 0 969 1 1794 98 41 4 chrX 35593040 35593286 -141380854 + AluSx SINE Alu 50 304 -8 2044 118 17 10 chrX 35593464 35593760 -141380380 + AluJo SINE Alu 1 298 -14 2121 112 0 14 chrX 35593761 35593879 -141380261 + AluSx SINE Alu 19 137 -175 2370 101 3 0 chrX 35593879 35594177 -141379963 + AluSp SINE Alu 1 299 -14 2121 112 0 14 chrX 35594177 35594343 -141379797 + AluSx SINE Alu 137 299 -13 2276 113 0 3 chrX 35594345 35594647 -141379493 + AluSx SINE Alu 1 301 -11 334 313 31 16 chrX 35594705 35594833 -141379307 + MIR SINE MIR 28 157 -105 596 328 43 4 chrX 35594876 35595111 -141379029 + MIR SINE MIR 19 262 0 256 246 0 0 chrX 35595128 35595189 -141378951 + MIR SINE MIR 201 261 -1 397 204 41 0 chrX 35598221 35598319 -141375821 - U13 snRNA snRNA -2 102 1 591 122 0 0 chrX 35598678 35598760 -141375380 - 5S rRNA rRNA -39 82 1 2402 84 7 0 chrX 35599743 35600040 -141374100 - AluSx SINE Alu -13 299 1 1901 215 104 10 chrX 35600370 35600431 -141373709 - MLT1F LTR MaLR -8 534 480 2279 105 10 3 chrX 35600431 35600737 -141373403 + AluSx SINE Alu 1 308 -4 1901 215 104 10 chrX 35600737 35601163 -141372977 - MLT1F LTR MaLR -62 480 1 24 32 0 0 chrX 35601207 35601238 -141372902 + AT_rich Low_complexity Low_complexity 1 31 0 2091 99 3 20 chrX 35601252 35601546 -141372594 + AluSc SINE Alu 1 289 -20 1815 157 19 32 chrX 35601631 35601944 -141372196 + AluJb SINE Alu 1 309 -3 2499 50 0 50 chrX 35602086 35602405 -141371735 + AluY SINE Alu 1 303 -8 1347 65 0 60 chrX 35602405 35602590 -141371550 + AluY SINE Alu 133 306 -5 2147 124 14 0 chrX 35602662 35602952 -141371188 + AluSx SINE Alu 1 294 -18 2325 104 3 16 chrX 35603067 35603374 -141370766 + AluSx SINE Alu 1 303 -9 1043 91 0 8 chrX 35603376 35603508 -141370632 + AluSq/x SINE Alu 3 133 -179 2105 93 50 0 chrX 35603518 35603798 -141370342 + AluSx SINE Alu 5 298 -14 822 281 103 58 chrX 35603798 35604420 -141369720 + L1 LINE L1 3200 3860 -2286 2379 102 0 0 chrX 35604420 35604723 -141369417 + AluSg SINE Alu 1 303 -7 822 281 103 58 chrX 35604723 35604820 -141369320 + L1 LINE L1 3860 3951 -2195 900 175 0 0 chrX 35604830 35604967 -141369173 + FLAM_C SINE Alu 1 137 -6 680 276 104 84 chrX 35604976 35605049 -141369091 + L1 LINE L1 3961 4031 -2115 2360 101 0 3 chrX 35605049 35605346 -141368794 - AluSq SINE Alu -17 296 1 680 276 104 84 chrX 35605346 35605532 -141368608 + L1 LINE L1 4031 4212 -1934 2568 78 0 0 chrX 35605532 35605841 -141368299 + AluY SINE Alu 1 309 -2 680 276 104 84 chrX 35605841 35605880 -141368260 + L1 LINE L1 4212 4249 -1897 2335 91 0 7 chrX 35605880 35606178 -141367962 + AluSq SINE Alu 1 296 -17 680 276 104 84 chrX 35606178 35606395 -141367745 + L1 LINE L1 4249 4555 -1591 1654 211 112 19 chrX 35606405 35606890 -141367250 - MLT1F LTR MaLR -23 519 1 2348 96 3 0 chrX 35606915 35607206 -141366934 + AluSp SINE Alu 1 292 -21 1151 129 6 0 chrX 35607264 35607427 -141366713 - FRAM SINE Alu -12 164 1 1958 73 84 25 chrX 35607649 35607923 -141366217 + AluY SINE Alu 1 290 -21 1854 52 9 0 chrX 35607922 35608135 -141366005 + AluSc SINE Alu 80 294 -15 * 409 240 174 0 chrX 35608143 35608264 -141365876 + FLAM_A SINE Alu 1 142 0 616 303 89 7 chrX 35608279 35608471 -141365669 + L1 LINE L1 4821 4996 -1150 2390 109 0 0 chrX 35608471 35608784 -141365356 + AluSq SINE Alu 1 313 0 616 303 89 7 chrX 35608784 35608843 -141365297 + L1 LINE L1 4996 5049 -1097 2343 101 0 0 chrX 35608843 35609131 -141365009 + AluSg SINE Alu 1 288 -22 616 303 89 7 chrX 35609131 35609308 -141364832 + L1 LINE L1 5049 5308 -838 2328 89 0 30 chrX 35609599 35609903 -141364237 - AluSg SINE Alu -14 296 2 1982 71 0 78 chrX 35610001 35610284 -141363856 - AluSg SINE Alu -49 261 1 1643 95 9 0 chrX 35614394 35614604 -141359536 + AluSg/x SINE Alu 83 294 -16 1987 88 8 0 chrX 35614843 35615094 -141359046 + AluSx SINE Alu 42 294 -18 200 329 13 13 chrX 35615401 35615477 -141358663 + MIR SINE MIR 36 111 -151 291 279 54 9 chrX 35616827 35616905 -141357235 + MIR SINE MIR 104 190 -72 2261 107 10 0 chrX 35616905 35617204 -141356936 - AluSx SINE Alu -10 302 1 291 279 54 9 chrX 35617204 35617236 -141356904 + MIR SINE MIR 190 219 -43 399 203 220 0 chrX 35617466 35617584 -141356556 + MER46C DNA MER2_type 86 229 -109 679 216 91 143 chrX 35617720 35617833 -141356307 - LTR47B LTR ERVL -5 438 321 2069 115 14 3 chrX 35617833 35618120 -141356020 + AluSx SINE Alu 1 290 -22 679 216 91 143 chrX 35618120 35618348 -141355792 - LTR47B LTR ERVL -122 321 125 2210 52 0 4 chrX 35618348 35618615 -141355525 - AluY SINE Alu -45 266 1 679 216 91 143 chrX 35618615 35618734 -141355406 - LTR47B LTR ERVL -318 125 1 2241 111 3 0 chrX 35618817 35619114 -141355026 + AluSx SINE Alu 1 298 -14 1403 172 55 65 chrX 35619866 35620182 -141353958 + AluJb SINE Alu 1 313 0 1832 178 3 25 chrX 35620269 35620584 -141353556 - AluJb SINE Alu -4 308 1 4899 167 62 35 chrX 35620645 35620709 -141353431 - L1MA9 LINE L1 0 6312 6251 2373 90 0 3 chrX 35620709 35621008 -141353132 + AluSx SINE Alu 1 298 -14 4899 167 62 35 chrX 35621008 35621615 -141352525 - L1MA9 LINE L1 -61 6251 5662 2427 82 13 0 chrX 35621615 35621919 -141352221 - AluY SINE Alu -1 310 3 4899 167 62 35 chrX 35621919 35622025 -141352115 - L1MA9 LINE L1 -650 5662 5560 2145 154 0 0 chrX 35622025 35622337 -141351803 - AluSx SINE Alu 0 312 1 4899 167 62 35 chrX 35622337 35622693 -141351447 - L1MA9 LINE L1 -752 5560 5215 2077 100 46 4 chrX 35622693 35622973 -141351167 - AluSx SINE Alu -20 292 1 4899 167 62 35 chrX 35622973 35623235 -141350905 - L1MA9 LINE L1 -1097 5215 4872 2203 82 0 41 chrX 35623235 35623526 -141350614 + AluSg SINE Alu 1 279 -31 4899 167 62 35 chrX 35623526 35623586 -141350554 - L1MA9 LINE L1 -1440 4872 4815 290 119 0 0 chrX 35623621 35623663 -141350477 - MER57A LTR ERV1 -67 336 295 315 71 0 0 chrX 35623696 35623738 -141350402 + (TG)n Simple_repeat Simple_repeat 2 43 0 990 163 0 19 chrX 35623744 35623887 -141350253 - AluJo SINE Alu -35 277 136 2359 82 10 0 chrX 35623887 35624181 -141349959 - AluSp SINE Alu -16 297 1 990 163 0 19 chrX 35624181 35624197 -141349943 - AluJo SINE Alu -176 136 121 717 87 63 0 chrX 35624197 35624324 -141349816 - L1MA2 LINE L1 -172 6132 5998 * 1080 184 179 25 chrX 35624322 35624393 -141349747 - L1MA9 LINE L1 -2471 3675 3616 2141 118 17 7 chrX 35624393 35624690 -141349450 - AluSx SINE Alu -12 300 1 1080 184 179 25 chrX 35624690 35624858 -141349282 - L1MA9 LINE L1 -2530 3616 3475 2037 155 0 3 chrX 35624858 35625155 -141348985 - AluJb SINE Alu -15 297 2 1080 184 179 25 chrX 35625155 35625382 -141348758 - L1MA9 LINE L1 -2671 3475 3038 1786 138 0 4 chrX 35625384 35625645 -141348495 - AluJo SINE Alu 0 312 53 2258 85 31 3 chrX 35625645 35625938 -141348202 + AluSx SINE Alu 1 302 -10 399 131 0 16 chrX 35625942 35626003 -141348137 - AluJo SINE Alu -242 60 1 549 217 7 7 chrX 35626003 35626146 -141347994 - L1MA9 LINE L1 -3267 2879 2737 258 347 93 0 chrX 35626182 35626375 -141347765 - L2 LINE L2 -131 3182 2972 1627 237 125 6 chrX 35626385 35626857 -141347283 + REP3 LTR ERV 6 533 -29 1501 185 108 16 chrX 35626868 35627305 -141346835 - L2 LINE L2 -340 2974 2498 787 240 20 80 chrX 35627390 35627600 -141346540 + MIR SINE MIR 7 228 -34 2240 106 14 0 chrX 35627600 35627892 -141346248 + AluSx SINE Alu 1 296 -16 186 43 0 0 chrX 35627895 35627918 -141346222 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 787 240 20 80 chrX 35627918 35627953 -141346187 + MIR SINE MIR 230 241 -21 201 333 0 0 chrX 35628060 35628144 -141345996 - L2 LINE L2 -421 2892 2809 1103 76 0 0 chrX 35628352 35628509 -141345631 + L1PA8 LINE L1 6016 6172 0 308 263 223 17 chrX 35628535 35628710 -141345430 + MIR SINE MIR 48 258 -4 349 284 20 0 chrX 35628710 35628812 -141345328 + L1M4 LINE L1 3787 3890 -2256 2175 114 7 0 chrX 35629100 35629390 -141344750 - AluSx SINE Alu -20 292 1 1408 171 13 0 chrX 35629986 35630220 -141343920 - AluJb SINE Alu 0 312 76 230 229 0 16 chrX 35630221 35630282 -141343858 + L1M4 LINE L1 108 167 -6375 1484 117 15 0 chrX 35630282 35630488 -141343652 + AluSx SINE Alu 12 220 -92 661 119 0 0 chrX 35630490 35630591 -141343549 - AluS SINE Alu -211 102 2 32 26 0 0 chrX 35630648 35630687 -141343453 + AT_rich Low_complexity Low_complexity 1 39 0 663 148 0 90 chrX 35630939 35631094 -141343046 + FLAM_C SINE Alu 2 142 -1 1726 177 37 0 chrX 35631100 35631371 -141342769 - AluJb SINE Alu -31 281 1 2339 98 0 7 chrX 35631390 35631696 -141342444 - AluSq SINE Alu -9 304 1 2018 131 42 0 chrX 35631698 35631981 -141342159 - AluJb SINE Alu -15 297 3 207 0 0 0 chrX 35631996 35632019 -141342121 + (A)n Simple_repeat Simple_repeat 1 23 0 526 200 26 61 chrX 35632044 35632136 -141342004 + MIR SINE MIR 100 184 -78 2144 132 3 0 chrX 35632136 35632431 -141341709 + AluSx SINE Alu 1 296 -16 526 200 26 61 chrX 35632431 35632508 -141341632 + MIR SINE MIR 184 262 0 2603 64 0 3 chrX 35632905 35633217 -141340923 + AluY SINE Alu 1 311 0 2423 93 0 0 chrX 35633426 35633728 -141340412 - AluSq SINE Alu -11 302 1 231 256 141 0 chrX 35635505 35635583 -141338557 - L2 LINE L2 -3 3310 3222 305 331 113 0 chrX 35635646 35635788 -141338352 - L2 LINE L2 -632 2682 2525 2156 57 49 0 chrX 35637315 35637579 -141336561 + AluY SINE Alu 1 277 -34 205 182 0 0 chrX 35638807 35638840 -141335300 + (TAG)n Simple_repeat Simple_repeat 2 34 0 614 234 28 7 chrX 35638845 35638990 -141335150 - MIR SINE MIR -12 250 103 183 205 0 0 chrX 35639013 35639052 -141335088 + CT-rich Low_complexity Low_complexity 2 40 0 520 297 67 0 chrX 35639108 35639273 -141334867 + MER5B DNA MER1_type 3 178 0 1787 168 17 17 chrX 35639521 35639818 -141334322 - AluJo SINE Alu -15 297 1 2380 105 0 0 chrX 35639866 35640172 -141333968 + AluSx SINE Alu 1 306 -6 1198 107 18 24 chrX 35640488 35640656 -141333484 + AluJb SINE Alu 133 299 -13 252 114 0 0 chrX 35641072 35641107 -141333033 - U2 snRNA snRNA -153 35 1 248 231 0 0 chrX 35641730 35641782 -141332358 - L2 LINE L2 0 3272 3221 946 241 158 25 chrX 35641799 35642072 -141332068 - L2 LINE L2 0 3313 3078 2213 116 7 0 chrX 35642072 35642364 -141331776 - AluJo SINE Alu -18 294 1 946 241 158 25 chrX 35642364 35642763 -141331377 - L2 LINE L2 -235 3078 2563 2595 170 12 83 chrX 35643541 35643845 -141330295 - MER68 LTR ERV1 0 562 238 2014 123 0 39 chrX 35643845 35644155 -141329985 - AluSx SINE Alu 0 312 15 2595 170 12 83 chrX 35644155 35644268 -141329872 - MER68 LTR ERV1 -324 238 119 2453 76 0 10 chrX 35644268 35644571 -141329569 - AluSc SINE Alu -9 300 1 2595 170 12 83 chrX 35644571 35644613 -141329527 - MER68 LTR ERV1 -443 119 76 2014 138 33 7 chrX 35644613 35644917 -141329223 - AluJb SINE Alu 0 312 1 2595 170 12 83 chrX 35644917 35645060 -141329080 - MER68 LTR ERV1 -486 76 1 2492 73 0 3 chrX 35645558 35645861 -141328279 + AluY SINE Alu 1 302 -9 2387 78 24 0 chrX 35645862 35646156 -141327984 + AluSc SINE Alu 1 301 -8 2331 89 3 3 chrX 35646465 35646756 -141327384 + AluSp SINE Alu 1 291 -22 2465 62 0 13 chrX 35646897 35647201 -141326939 - AluY SINE Alu -11 300 1 2297 89 0 0 chrX 35647256 35647564 -141326576 - AluSx SINE Alu 0 308 1 2559 71 0 3 chrX 35647812 35648122 -141326018 - AluSc SINE Alu 0 309 1 1207 102 0 6 chrX 35648993 35649150 -141324990 - AluSg/x SINE Alu -14 298 143 2344 97 7 0 chrX 35649156 35649455 -141324685 - AluSx SINE Alu -11 301 1 2184 118 0 3 chrX 35649565 35649869 -141324271 - AluSx SINE Alu -9 303 1 656 84 0 0 chrX 35650619 35650714 -141323426 - AluSc SINE Alu -5 304 210 2546 66 0 0 chrX 35650622 35650923 -141323217 - AluSc SINE Alu -8 301 1 2074 125 10 7 chrX 35650987 35651275 -141322865 + AluSx SINE Alu 6 294 -18 445 156 0 44 chrX 35651919 35652009 -141322131 + AluJ/FRAM SINE Alu 226 311 -1 2162 136 7 0 chrX 35652275 35652583 -141321557 - AluSx SINE Alu -2 310 1 742 169 0 37 chrX 35652734 35652870 -141321270 - FLAM_A SINE Alu -2 131 1 492 246 135 8 chrX 35653183 35653513 -141320627 - LTR16A LTR ERVL 0 450 17 2074 116 21 0 chrX 35653514 35653799 -141320341 - AluSx SINE Alu -21 291 1 225 234 15 15 chrX 35653899 35653974 -141320166 + MIR SINE MIR 57 132 -76 413 229 92 0 chrX 35654004 35654113 -141320027 - L2 LINE L2 0 3313 3195 397 233 0 70 chrX 35654717 35654846 -141319294 + MER31-int LTR ERV1 1159 1278 -3658 311 176 29 69 chrX 35654955 35655057 -141319083 + MER31-int LTR ERV1 1290 1387 -3549 1986 162 0 0 chrX 35655062 35655370 -141318770 + AluJb SINE Alu 5 312 0 336 279 6 45 chrX 35655632 35655811 -141318329 + MER31-int LTR ERV1 1700 1871 -3065 1245 189 0 110 chrX 35655820 35656148 -141317992 - AluJo SINE Alu -20 292 1 2265 84 11 0 chrX 35656156 35656340 -141317800 - AluY SINE Alu 0 311 122 198 0 0 0 chrX 35656340 35656362 -141317778 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2265 84 11 0 chrX 35656362 35656486 -141317654 - AluY SINE Alu -189 122 1 323 80 0 20 chrX 35656486 35656536 -141317604 - AluJb SINE Alu -166 136 88 1337 181 0 5 chrX 35656538 35656759 -141317381 - AluJo SINE Alu -92 220 1 672 179 49 12 chrX 35656961 35657123 -141317017 - Charlie1 DNA MER1_type -34 2727 2560 524 88 0 0 chrX 35657126 35657194 -141316946 + AluJ/FLAM SINE Alu 2 69 -243 1099 162 13 66 chrX 35657387 35657615 -141316525 + AluJo SINE Alu 89 304 -8 2383 70 0 10 chrX 35657819 35658117 -141316023 - AluSg SINE Alu -15 295 1 1895 129 7 4 chrX 35658243 35658522 -141315618 - AluSx SINE Alu -32 280 1 2466 76 0 10 chrX 35658524 35658826 -141315314 - AluSx SINE Alu -13 299 1 2281 89 0 0 chrX 35658853 35659158 -141314982 - AluY SINE Alu 0 305 1 2465 90 0 3 chrX 35659333 35659643 -141314497 - AluSx SINE Alu -3 309 1 2230 109 0 7 chrX 35659643 35659936 -141314204 - AluSx SINE Alu -21 291 1 743 134 126 0 chrX 35660122 35660241 -141313899 + AluSq/x SINE Alu 3 136 -177 2256 115 0 13 chrX 35660241 35660545 -141313595 + AluSx SINE Alu 1 300 -12 2178 99 25 0 chrX 35660548 35660859 -141313281 + AluSx SINE Alu 1 318 0 1668 151 48 31 chrX 35660960 35661251 -141312889 + AluJb SINE Alu 3 298 -14 195 355 0 16 chrX 35661426 35661488 -141312652 - MER5A DNA MER1_type -16 173 113 192 375 0 14 chrX 35661430 35661502 -141312638 + MER5B DNA MER1_type 21 91 -87 * 1928 164 3 6 chrX 35661607 35661919 -141312221 + AluJb SINE Alu 1 311 -1 2254 113 3 3 chrX 35662001 35662311 -141311829 + AluSx SINE Alu 1 310 -2 2212 114 3 7 chrX 35662312 35662619 -141311521 + AluSx SINE Alu 1 306 -6 1193 220 134 67 chrX 35662669 35663133 -141311007 - MLT1F LTR MaLR -47 495 1 950 201 0 44 chrX 35663272 35663476 -141310664 - AluJo SINE Alu -17 295 101 456 143 77 44 chrX 35663581 35663672 -141310468 + FRAM SINE Alu 29 122 -54 227 319 7 36 chrX 35663917 35664055 -141310085 + L1ME LINE L1 2677 2810 -3336 2241 127 0 6 chrX 35664087 35664401 -141309739 - AluJb SINE Alu 0 312 1 234 316 66 7 chrX 35664482 35664618 -141309522 + L1ME LINE L1 5483 5626 -495 2134 124 3 0 chrX 35665630 35665937 -141308203 - AluSc SINE Alu -1 308 1 296 256 0 22 chrX 35666695 35666785 -141307355 + MIR SINE MIR 141 228 -34 321 96 96 0 chrX 35667362 35667414 -141306726 + L1MB7 LINE L1 6100 6156 -28 2193 124 0 3 chrX 35668228 35668535 -141305605 + AluSq SINE Alu 3 308 -5 1743 166 3 10 chrX 35669033 35669329 -141304811 + AluJo SINE Alu 1 294 -18 189 0 0 0 chrX 35669329 35669350 -141304790 + (GA)n Simple_repeat Simple_repeat 2 22 0 336 108 154 0 chrX 35670358 35670423 -141303717 + FLAM_A SINE Alu 2 76 -57 1100 112 12 12 chrX 35670423 35670593 -141303547 - AluSg/x SINE Alu -6 304 135 246 158 0 0 chrX 35671338 35671389 -141302751 + T-rich Low_complexity Low_complexity 1 52 0 3999 18 0 0 chrX 35671389 35671842 -141302298 - L1PA3 LINE L1 0 6155 5703 563 193 88 78 chrX 35671963 35672155 -141301985 - AluJo SINE Alu -114 198 5 244 170 21 0 chrX 35672164 35672211 -141301929 - AluSg/x SINE Alu -169 133 86 911 178 131 0 chrX 35672211 35672402 -141301738 - AluJo SINE Alu -92 220 5 296 115 0 0 chrX 35672418 35672464 -141301676 - AluSq/x SINE Alu -177 125 86 889 157 112 20 chrX 35672464 35672661 -141301479 - AluJb SINE Alu -92 220 6 269 143 0 0 chrX 35672661 35672703 -141301437 - AluJo/FLAM SINE Alu -195 107 66 523 182 20 0 chrX 35672706 35672805 -141301335 + Alu SINE Alu 193 293 -18 1222 32 0 43 chrX 35672806 35672838 -141301302 + (GGGAA)n Simple_repeat Simple_repeat 1 207 0 1222 32 0 43 chrX 35672838 35673023 -141301117 + (GGGAA)n Simple_repeat Simple_repeat 3 179 0 900 148 0 22 chrX 35673099 35673281 -141300859 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 487 171 12 0 chrX 35673282 35673364 -141300776 + L1MD2 LINE L1 153 235 -6307 23 33 0 0 chrX 35673713 35673743 -141300397 + AT_rich Low_complexity Low_complexity 1 30 0 2146 102 0 0 chrX 35673754 35674028 -141300112 - AluSq SINE Alu -37 276 3 189 0 0 0 chrX 35674837 35674858 -141299282 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 930 50 100 0 chrX 35674858 35674978 -141299162 - AluY SINE Alu -179 132 1 2540 176 85 37 chrX 35674980 35675462 -141298678 - L1MD2 LINE L1 -534 5825 5368 1864 151 0 35 chrX 35675462 35675814 -141298326 - AluSx SINE Alu 0 312 1 2540 176 85 37 chrX 35675814 35676424 -141297716 - L1MD2 LINE L1 -991 5368 4675 2255 96 0 3 chrX 35676428 35676720 -141297420 - AluSx SINE Alu -21 291 1 260 283 45 65 chrX 35676859 35677106 -141297034 + L1M4 LINE L1 4882 5123 -1023 306 236 6 115 chrX 35677326 35677438 -141296702 + L1MD2 LINE L1 1566 1654 -4980 2194 123 0 0 chrX 35677438 35677746 -141296394 + AluSx SINE Alu 1 308 -4 306 236 6 115 chrX 35677746 35677807 -141296333 + L1MD2 LINE L1 1654 1720 -4914 1844 129 0 0 chrX 35677814 35678069 -141296071 + AluSq SINE Alu 35 289 -24 3592 193 86 35 chrX 35678077 35678319 -141295821 + L1MD2 LINE L1 5174 5402 -1455 249 0 0 68 chrX 35678319 35678363 -141295777 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3592 193 86 35 chrX 35678363 35678380 -141295760 + L1MD2 LINE L1 5402 5417 -1440 975 115 0 0 chrX 35678380 35678528 -141295612 + (TA)n Simple_repeat Simple_repeat 2 149 0 3592 193 86 35 chrX 35678528 35678831 -141295309 + L1MD2 LINE L1 5417 5703 -1154 1993 131 3 34 chrX 35678831 35679152 -141294988 + AluSx SINE Alu 2 312 0 3592 193 86 35 chrX 35679152 35679653 -141294487 + L1MD2 LINE L1 5703 6335 -522 2039 117 0 68 chrX 35679653 35679977 -141294163 + AluSx SINE Alu 1 302 -10 3592 193 86 35 chrX 35679977 35680231 -141293909 + L1MD2 LINE L1 6335 6575 -282 2055 139 3 0 chrX 35680231 35680533 -141293607 - AluSx SINE Alu -9 303 1 27 29 0 0 chrX 35680571 35680605 -141293535 + AT_rich Low_complexity Low_complexity 1 34 0 423 117 0 0 chrX 35681405 35681465 -141292675 + AluS SINE Alu 3 62 -256 575 146 27 180 chrX 35681469 35681697 -141292443 - LOR1-int LTR ERV1 -2378 2493 1366 2141 100 3 6 chrX 35681697 35682008 -141292132 + AluY SINE Alu 1 310 -1 1013 140 6 0 chrX 35682008 35682165 -141291975 + AluSg/x SINE Alu 132 289 -21 207 0 0 0 chrX 35682171 35682194 -141291946 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2742 189 71 34 chrX 35682198 35682912 -141291228 - LOR1-int LTR ERV1 -2561 2310 1570 958 215 31 25 chrX 35682912 35683227 -141290913 - MER34 LTR ERV1 -162 380 34 2130 132 0 3 chrX 35683746 35684057 -141290083 + AluSx SINE Alu 1 310 -2 248 102 20 0 chrX 35684060 35684109 -141290031 + (GAAAA)n Simple_repeat Simple_repeat 3 52 0 1711 136 65 4 chrX 35684416 35684695 -141289445 - AluJb SINE Alu -12 300 5 1825 224 27 10 chrX 35684695 35685105 -141289035 - MER65C LTR ERV1 -26 435 19 1930 127 11 0 chrX 35685115 35685399 -141288741 + AluSx SINE Alu 10 296 -16 1181 189 12 62 chrX 35685511 35685861 -141288279 + MER31A LTR ERV1 2 447 -38 844 203 68 0 chrX 35685864 35686027 -141288113 - FAM SINE Alu 0 175 2 986 140 0 0 chrX 35686071 35686214 -141287926 - AluJb SINE Alu -169 143 1 245 331 41 32 chrX 35686419 35686733 -141287407 - L1MEd LINE L1 -4888 1231 915 2145 117 3 0 chrX 35686745 35687069 -141287071 - AluSx SINE Alu 0 312 1 2097 137 3 0 chrX 35687069 35687369 -141286771 - AluSq SINE Alu -10 303 3 813 276 14 5 chrX 35688115 35688336 -141285804 - MIR SINE MIR -28 234 12 1588 193 7 17 chrX 35688345 35688646 -141285494 + AluJo SINE Alu 5 302 -10 1826 173 7 0 chrX 35689031 35689338 -141284802 - AluJb SINE Alu -3 309 1 325 221 63 113 chrX 35689394 35689616 -141284524 - HAL1 LINE L1 -1046 1461 1251 1322 160 10 0 chrX 35689633 35689839 -141284301 - AluSg/x SINE Alu -14 298 91 2305 105 0 0 chrX 35690468 35690772 -141283368 + AluSc SINE Alu 1 304 -5 40815 59 5 2 chrX 35691327 35696554 -141277586 + L1PA5 LINE L1 1 5248 -898 5036 46 0 0 chrX 35696554 35697181 -141276959 + L1PA5 LINE L1 5524 6153 -1 246 287 74 19 chrX 35697183 35697291 -141276849 + MIR SINE MIR 84 197 -65 2824 121 50 4 chrX 35697385 35697840 -141276300 - Tigger1 DNA MER2_type 0 2418 1943 * 5071 140 64 52 chrX 35697833 35698665 -141275475 - Tigger1 DNA MER2_type -1377 1041 192 1354 108 14 5 chrX 35698665 35698878 -141275262 + L1MA2 LINE L1 6089 6303 -1 5071 140 64 52 chrX 35698878 35699073 -141275067 - Tigger1 DNA MER2_type -2226 192 1 2162 68 61 4 chrX 35699640 35699919 -141274221 - AluY SINE Alu -16 295 1 387 217 0 0 chrX 35700849 35700932 -141273208 - L1ME LINE L1 -424 5697 5615 423 246 93 8 chrX 35700934 35701052 -141273088 - L2 LINE L2 -2 3311 3184 1857 154 20 0 chrX 35701071 35701364 -141272776 - AluJo SINE Alu -13 299 1 2004 124 0 4 chrX 35701839 35702113 -141272027 + AluSx SINE Alu 14 286 -26 198 103 0 0 chrX 35702113 35702142 -141271998 + (TA)n Simple_repeat Simple_repeat 2 30 0 3362 188 65 47 chrX 35702142 35702739 -141271401 + L1MD2 LINE L1 4678 5263 -1096 1909 146 3 23 chrX 35702739 35703040 -141271100 + AluSx SINE Alu 13 307 -5 3362 188 65 47 chrX 35703040 35703799 -141270341 + L1MD2 LINE L1 5263 6075 -284 2139 134 0 0 chrX 35703801 35704091 -141270049 - AluSx SINE Alu -22 290 1 2108 131 0 0 chrX 35704952 35705272 -141268868 + AluSp SINE Alu 2 321 0 2411 100 3 0 chrX 35706310 35706620 -141267520 - AluSp SINE Alu -2 311 1 348 164 0 0 chrX 35706896 35706957 -141267183 + L1MD2 LINE L1 6067 6127 -232 497 252 13 13 chrX 35706963 35707114 -141267026 + L1MD2 LINE L1 6194 6344 -15 1495 120 20 0 chrX 35707128 35707328 -141266812 - AluJo SINE Alu -22 290 87 788 210 100 40 chrX 35707388 35707545 -141266595 + L1MEd LINE L1 894 1040 -5079 2355 108 10 0 chrX 35707545 35707850 -141266290 + AluSq SINE Alu 1 308 -5 788 210 100 40 chrX 35707850 35707992 -141266148 + L1MEd LINE L1 1040 1211 -4908 5014 181 78 69 chrX 35708386 35708541 -141265599 + L1M4 LINE L1 15 167 -6375 2236 85 18 0 chrX 35708541 35708817 -141265323 + AluSx SINE Alu 12 295 -17 1031 45 0 8 chrX 35708817 35708951 -141265189 + (GGAA)n Simple_repeat Simple_repeat 3 135 0 5014 181 78 69 chrX 35708957 35709281 -141264859 + L1M4 LINE L1 167 487 -6055 2385 105 0 25 chrX 35709281 35709596 -141264544 + AluSc SINE Alu 1 307 -2 5014 181 78 69 chrX 35709596 35709998 -141264142 + L1M4 LINE L1 487 884 -5658 1939 126 7 34 chrX 35709998 35710154 -141263986 - AluJb SINE Alu -26 286 127 216 0 0 0 chrX 35710154 35710178 -141263962 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2404 52 0 11 chrX 35710178 35710465 -141263675 - AluY SINE Alu -27 284 1 1939 126 7 34 chrX 35710465 35710601 -141263539 - AluJb SINE Alu -183 129 1 5014 181 78 69 chrX 35710601 35710842 -141263298 + L1M4 LINE L1 884 1155 -5387 2286 127 0 0 chrX 35710842 35711150 -141262990 - AluSx SINE Alu -4 308 1 5014 181 78 69 chrX 35711150 35711356 -141262784 + L1M4 LINE L1 1155 1358 -5184 1617 166 17 38 chrX 35711433 35711614 -141262526 - AluJo SINE Alu -16 296 121 2318 99 0 0 chrX 35711614 35711945 -141262195 + AluSx SINE Alu 1 331 0 1617 166 17 38 chrX 35711945 35712052 -141262088 - AluJo SINE Alu -191 121 13 338 261 18 0 chrX 35712142 35712253 -141261887 + L1M4 LINE L1 2334 2446 -4200 1146 180 174 47 chrX 35712254 35712571 -141261569 + MLT1A1 LTR MaLR 4 360 -5 539 137 29 10 chrX 35712608 35712710 -141261430 + L1MB7 LINE L1 4439 4542 -1604 * 1196 144 61 2 chrX 35712684 35712917 -141261223 + L1MB7 LINE L1 5801 6043 -141 1827 158 39 35 chrX 35712941 35713252 -141260888 - AluJo SINE Alu 0 312 1 324 261 45 40 chrX 35713474 35713516 -141260624 + L1MC/D LINE L1 5354 5394 -2414 2006 139 13 10 chrX 35713516 35713651 -141260489 + AluJb SINE Alu 1 134 -178 1970 100 0 76 chrX 35713651 35713991 -141260149 + AluSc SINE Alu 1 317 0 2006 139 13 10 chrX 35713991 35714153 -141259987 + AluJb SINE Alu 134 302 -10 324 261 45 40 chrX 35714153 35714170 -141259970 + L1MC/D LINE L1 5394 5409 -2399 1964 147 0 13 chrX 35714170 35714470 -141259670 + AluJb SINE Alu 14 309 -3 306 0 0 0 chrX 35714478 35714512 -141259628 + (CA)n Simple_repeat Simple_repeat 2 35 0 324 261 45 40 chrX 35714512 35714618 -141259522 + L1MC/D LINE L1 5415 5530 -2278 523 291 75 18 chrX 35714619 35714897 -141259243 + L2 LINE L2 2879 3172 -141 1118 173 38 118 chrX 35714901 35715151 -141258989 - MER58B DNA MER1_type -2079 341 72 2207 97 62 0 chrX 35715151 35715441 -141258699 - AluSx SINE Alu -4 308 1 1776 141 51 14 chrX 35715443 35715719 -141258421 - AluJo SINE Alu -20 292 7 1118 173 38 118 chrX 35715719 35715811 -141258329 - MER58B DNA MER1_type -2349 71 24 546 200 61 9 chrX 35715820 35715935 -141258205 + L2 LINE L2 3193 3313 0 2143 125 3 3 chrX 35715941 35716236 -141257904 - AluSx SINE Alu -17 295 1 516 32 0 0 chrX 35716516 35716578 -141257562 + (TCC)n Simple_repeat Simple_repeat 1 62 0 241 234 21 32 chrX 35718387 35718481 -141255659 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 186 43 0 0 chrX 35718818 35718841 -141255299 + (CCCCAG)n Simple_repeat Simple_repeat 1 23 0 2344 90 3 16 chrX 35720185 35720495 -141253645 + AluSx SINE Alu 1 306 -6 2373 91 0 10 chrX 35721180 35721488 -141252652 + AluSx SINE Alu 1 305 -7 1137 93 0 0 chrX 35721488 35721628 -141252512 + AluSg/x SINE Alu 135 274 -38 914 73 40 7 chrX 35721634 35721785 -141252355 + GA-rich Low_complexity Low_complexity 2 157 0 1885 103 114 7 chrX 35722373 35722644 -141251496 + AluSg SINE Alu 1 300 -10 1239 111 12 0 chrX 35722644 35722806 -141251334 + AluSg/x SINE Alu 134 297 -15 243 0 0 0 chrX 35723170 35723197 -141250943 + (CA)n Simple_repeat Simple_repeat 1 27 0 355 264 28 22 chrX 35725879 35726057 -141248083 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 * 378 298 0 12 chrX 35725928 35726096 -141248044 + GA-rich Low_complexity Low_complexity 2 167 0 242 56 28 0 chrX 35729265 35729301 -141244839 + (TC)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chrX 35729301 35729321 -141244819 + (CA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chrX 35729784 35729804 -141244336 + (A)n Simple_repeat Simple_repeat 1 20 0 2406 92 0 10 chrX 35729815 35730118 -141244022 + AluSg SINE Alu 1 300 -10 671 267 64 11 chrX 35731174 35731361 -141242779 + MIR SINE MIR 59 255 -7 425 228 57 16 chrX 35732093 35732216 -141241924 - L2 LINE L2 -8 3305 3178 2277 122 0 0 chrX 35732218 35732522 -141241618 - AluSx SINE Alu -8 304 1 702 168 0 15 chrX 35732523 35732654 -141241486 - FLAM_A SINE Alu -4 129 1 1270 211 76 59 chrX 35732708 35732798 -141241342 - MER63B DNA MER1_type -634 428 341 1714 142 11 4 chrX 35732798 35733058 -141241082 - AluJb SINE Alu -15 297 36 1270 211 76 59 chrX 35733058 35733388 -141240752 - MER63B DNA MER1_type -721 341 1 328 262 0 12 chrX 35733553 35733637 -141240503 - MIR SINE MIR -69 193 111 256 193 0 18 chrX 35736634 35736691 -141237449 + GA-rich Low_complexity Low_complexity 2 57 0 1367 253 158 30 chrX 35737284 35737437 -141236703 - L2 LINE L2 -7 3306 3174 1661 167 51 0 chrX 35737437 35737713 -141236427 + AluJo SINE Alu 1 290 -22 1367 253 158 30 chrX 35737713 35737724 -141236416 - L2 LINE L2 -139 3174 3166 2502 78 0 0 chrX 35737724 35738017 -141236123 + AluSq SINE Alu 1 293 -20 1367 253 158 30 chrX 35738017 35738798 -141235342 - L2 LINE L2 -147 3166 2238 219 248 234 50 chrX 35739960 35740178 -141233962 - L2 LINE L2 -83 3230 2973 647 223 9 185 chrX 35741064 35741362 -141232778 - L2 LINE L2 -7 3306 3114 1707 171 77 0 chrX 35741362 35741648 -141232492 - AluJb SINE Alu -4 308 1 647 223 9 185 chrX 35741648 35741802 -141232338 - L2 LINE L2 -199 3114 2934 2234 125 3 0 chrX 35741936 35742231 -141231909 - AluSx SINE Alu -16 296 1 2318 85 0 28 chrX 35742231 35742550 -141231590 - AluSx SINE Alu -2 310 1 538 202 158 5 chrX 35742660 35742859 -141231281 + L1ME LINE L1 5369 5642 -528 2421 84 0 3 chrX 35742873 35743169 -141230971 + AluSx SINE Alu 1 295 -17 1105 155 0 33 chrX 35743396 35743577 -141230563 + AluJb SINE Alu 134 308 -4 1327 219 92 39 chrX 35743860 35744325 -141229815 + Charlie4a DNA MER1_type 1 490 -18 2432 84 0 0 chrX 35744325 35744621 -141229519 - AluSx SINE Alu -14 298 3 2378 96 3 0 chrX 35744671 35744963 -141229177 + AluSx SINE Alu 1 293 -19 768 216 106 26 chrX 35746921 35746950 -141227190 - L2 LINE L2 -338 2976 2951 2402 104 0 0 chrX 35746950 35747248 -141226892 + AluSx SINE Alu 1 298 -14 768 216 106 26 chrX 35747248 35747491 -141226649 - L2 LINE L2 -363 2951 2682 433 185 33 11 chrX 35747491 35747583 -141226557 + L1ME1 LINE L1 6062 6155 -11 1021 204 0 0 chrX 35747624 35747800 -141226340 + AluJb SINE Alu 137 312 0 1462 205 57 54 chrX 35747975 35748361 -141225779 + MLT1B LTR MaLR 1 387 -3 203 338 0 0 chrX 35749248 35749322 -141224818 + (TG)n Simple_repeat Simple_repeat 1 74 0 459 125 0 0 chrX 35749817 35749889 -141224251 + (TG)n Simple_repeat Simple_repeat 2 73 0 2333 100 3 3 chrX 35750736 35751037 -141223103 + AluSp SINE Alu 1 301 -12 603 133 47 70 chrX 35751717 35751845 -141222295 - FRAM SINE Alu -7 169 45 508 268 32 21 chrX 35751944 35752134 -141222006 + MER91A DNA MER1_type 4 195 -1 988 232 55 78 chrX 35752279 35752668 -141221472 + LTR37A LTR ERV1 6 345 -81 2080 133 0 7 chrX 35752668 35752969 -141221171 + AluJb SINE Alu 1 299 -13 988 232 55 78 chrX 35752969 35753048 -141221092 + LTR37A LTR ERV1 345 424 -2 497 315 24 0 chrX 35753444 35753609 -141220531 + MIR SINE MIR 92 260 -2 232 247 26 26 chrX 35753915 35753992 -141220148 + MIR3 SINE MIR 106 182 -26 180 250 0 0 chrX 35754268 35754312 -141219828 + MIR3 SINE MIR 145 188 -20 758 259 148 60 chrX 35754404 35754890 -141219250 - MLT1K LTR MaLR 0 588 60 2431 97 3 0 chrX 35754892 35755201 -141218939 + AluSg SINE Alu 1 310 0 1618 157 107 0 chrX 35755205 35755485 -141218655 + AluJo SINE Alu 1 310 -2 296 349 18 0 chrX 35756212 35756321 -141217819 + (CCCA)n Simple_repeat Simple_repeat 3 113 0 188 361 52 0 chrX 35756332 35756429 -141217711 - L2 LINE L2 -32 3240 3139 242 329 38 6 chrX 35756503 35756661 -141217479 - L2 LINE L2 -243 3029 2867 2306 105 7 7 chrX 35756673 35756979 -141217161 + AluSx SINE Alu 1 306 -6 2188 127 3 7 chrX 35757477 35757777 -141216363 + AluSx SINE Alu 1 299 -13 2435 80 3 0 chrX 35758227 35758515 -141215625 + AluSp SINE Alu 1 289 -24 186 43 0 0 chrX 35758515 35758538 -141215602 + (GA)n Simple_repeat Simple_repeat 2 24 0 1835 166 0 23 chrX 35758897 35759064 -141215076 - AluJo SINE Alu -12 300 142 2144 110 27 7 chrX 35759064 35759356 -141214784 - AluSx SINE Alu -14 298 1 1835 166 0 23 chrX 35759356 35759495 -141214645 - AluJo SINE Alu -170 142 1 329 143 18 0 chrX 35759495 35759551 -141214589 - L1M3 LINE L1 -744 5590 5534 1254 186 98 3 chrX 35759553 35759859 -141214281 - L1MC4a LINE L1 -1615 6193 5859 1178 67 0 0 chrX 35759859 35759994 -141214146 + AluSq/x SINE Alu 1 135 -178 1947 152 3 0 chrX 35759994 35760296 -141213844 + AluSx SINE Alu 1 303 -9 1182 229 39 10 chrX 35760296 35760602 -141213538 - L1MC4a LINE L1 -1939 5869 5555 405 0 0 0 chrX 35760787 35760832 -141213308 + (CA)n Simple_repeat Simple_repeat 1 45 0 202 234 0 0 chrX 35760851 35760898 -141213242 + MIR SINE MIR 98 144 -118 2792 160 44 23 chrX 35761012 35761575 -141212565 + MER90 LTR ERV1 1 575 0 303 337 47 1 chrX 35761676 35761796 -141212344 - MIR SINE MIR -65 143 30 1362 145 114 28 chrX 35762239 35762359 -141211781 + AluJo SINE Alu 1 109 -203 2296 75 7 36 chrX 35762359 35762665 -141211475 - AluSx SINE Alu -15 297 1 1362 145 114 28 chrX 35762665 35762799 -141211341 + AluJo SINE Alu 109 277 -35 2268 102 3 0 chrX 35762834 35763158 -141210982 + AluSx SINE Alu 1 312 0 189 0 0 0 chrX 35763171 35763192 -141210948 + (GA)n Simple_repeat Simple_repeat 2 22 0 2300 230 72 39 chrX 35763193 35763391 -141210749 + L1MC4 LINE L1 7102 7292 -750 1547 171 91 0 chrX 35763391 35763655 -141210485 + AluJo SINE Alu 14 301 -11 2300 230 72 39 chrX 35763655 35764252 -141209888 + L1MC4 LINE L1 7292 7923 -119 406 208 61 99 chrX 35764523 35764735 -141209405 - L1MC4a LINE L1 -707 5463 5260 184 319 14 14 chrX 35765183 35765255 -141208885 - MIR SINE MIR -55 153 82 180 0 0 0 chrX 35765544 35765564 -141208576 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2112 105 44 7 chrX 35765581 35765877 -141208263 - AluSq SINE Alu -6 307 1 1958 104 71 4 chrX 35765877 35766157 -141207983 - AluSq SINE Alu -14 299 1 206 226 19 0 chrX 35766739 35766792 -141207348 + C-rich Low_complexity Low_complexity 2 55 0 23 0 0 0 chrX 35766801 35766824 -141207316 + GC_rich Low_complexity Low_complexity 1 23 0 205 365 11 11 chrX 35767828 35768006 -141206134 + (CATAC)n Simple_repeat Simple_repeat 3 180 0 212 186 17 0 chrX 35768007 35768066 -141206074 + (CATGC)n Simple_repeat Simple_repeat 2 61 0 572 263 128 25 chrX 35768488 35768598 -141205542 - L1MC4 LINE L1 0 8042 7945 585 64 0 0 chrX 35768598 35768676 -141205464 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 572 263 128 25 chrX 35768676 35768885 -141205255 - L1MC4 LINE L1 -97 7945 7690 435 217 0 0 chrX 35769043 35769149 -141204991 + CT-rich Low_complexity Low_complexity 1 106 0 262 283 120 0 chrX 35771423 35771515 -141202625 - MIR SINE MIR -140 122 20 1960 215 101 29 chrX 35772535 35773455 -141200685 - L2 LINE L2 -1 3312 2331 1063 236 109 36 chrX 35774206 35774646 -141199494 - L2 LINE L2 0 3313 2842 2144 108 24 3 chrX 35775398 35775685 -141198455 + AluSx SINE Alu 1 293 -19 1919 131 21 18 chrX 35775779 35776062 -141198078 - AluJo SINE Alu -14 298 15 41 0 0 19 chrX 35776068 35776096 -141198044 + AT_rich Low_complexity Low_complexity 1 29 -22 2335 94 0 0 chrX 35776096 35776383 -141197757 - AluSp SINE Alu -26 287 1 41 0 0 19 chrX 35776383 35776406 -141197734 + AT_rich Low_complexity Low_complexity 29 51 0 1151 170 16 0 chrX 35776673 35776855 -141197285 - AluJo SINE Alu -8 304 120 918 91 0 0 chrX 35777003 35777113 -141197027 - AluSq/x SINE Alu -196 116 7 294 280 216 30 chrX 35777167 35777403 -141196737 - L1MC4a LINE L1 -1844 5964 5685 526 238 189 34 chrX 35777460 35777576 -141196564 - L1MC4a LINE L1 -2246 5562 5465 2292 109 0 3 chrX 35777576 35777878 -141196262 + AluSx SINE Alu 1 301 -11 526 238 189 34 chrX 35777878 35778026 -141196114 - L1MC4a LINE L1 -2343 5465 5257 225 0 0 0 chrX 35778460 35778485 -141195655 + (CA)n Simple_repeat Simple_repeat 2 26 0 2447 103 0 0 chrX 35780523 35780835 -141193305 - AluSx SINE Alu 0 312 1 1312 191 77 4 chrX 35780835 35781107 -141193033 - AluJo SINE Alu -20 292 1 2523 67 0 0 chrX 35781135 35781433 -141192707 + AluY SINE Alu 1 298 -13 455 280 77 7 chrX 35781454 35781597 -141192543 - L1MEc LINE L1 -4096 2300 2148 37 23 0 0 chrX 35782029 35782073 -141192067 + AT_rich Low_complexity Low_complexity 1 44 0 1144 89 0 0 chrX 35782073 35782208 -141191932 + AluSq/x SINE Alu 1 135 -178 2350 90 0 0 chrX 35782208 35782498 -141191642 + AluSg SINE Alu 1 290 -20 1847 159 0 20 chrX 35782561 35782857 -141191283 - AluJo SINE Alu -22 290 1 252 292 292 0 chrX 35783017 35783130 -141191010 + MIR SINE MIR 117 262 0 379 291 87 67 chrX 35783134 35783236 -141190904 - L1MC4a LINE L1 -1865 5943 5844 1878 141 0 39 chrX 35783236 35783541 -141190599 - AluJo SINE Alu -19 293 1 379 291 87 67 chrX 35783541 35783667 -141190473 - L1MC4a LINE L1 -1964 5844 5707 2373 104 0 7 chrX 35783667 35783976 -141190164 + AluSq SINE Alu 1 307 -6 379 291 87 67 chrX 35783976 35784000 -141190140 - L1MC4a LINE L1 -2101 5707 5685 752 193 20 25 chrX 35784014 35784193 -141189947 - L1MC4a LINE L1 -687 5483 5304 1795 167 40 3 chrX 35784193 35784493 -141189647 - AluJo SINE Alu 0 312 2 752 193 20 25 chrX 35784493 35784510 -141189630 - L1MC4a LINE L1 -866 5304 5288 266 351 66 20 chrX 35784617 35784768 -141189372 - MIR SINE MIR -11 251 94 2063 148 0 0 chrX 35785478 35785768 -141188372 - AluJb SINE Alu -22 290 1 896 158 79 0 chrX 35786784 35786948 -141187192 - MLT1B LTR MaLR -12 378 202 405 99 28 0 chrX 35786994 35787065 -141187075 - Alu SINE Alu -6 306 234 373 281 106 19 chrX 35987191 35987351 -140986789 - MIR SINE MIR -43 219 46 739 233 161 9 chrX 35987529 35987752 -140986388 + MIR SINE MIR 6 262 0 231 220 17 17 chrX 35987946 35988005 -140986135 + L2 LINE L2 3214 3272 0 259 316 20 0 chrX 35988365 35988463 -140985677 + L2 LINE L2 2140 2239 -1075 239 111 0 0 chrX 35988465 35988501 -140985639 + MER63 DNA MER1_type 4 39 -891 373 127 30 96 chrX 35988501 35988619 -140985521 - L1M4 LINE L1 -407 5755 5647 484 311 130 13 chrX 35988621 35988859 -140985281 + L2 LINE L2 3007 3272 0 1555 240 45 55 chrX 35989822 35990170 -140983970 + L1ME3A LINE L1 5624 5967 -203 1810 171 3 0 chrX 35990170 35990463 -140983677 + AluJo SINE Alu 5 298 -14 1555 240 45 55 chrX 35990463 35990644 -140983496 + L1ME3A LINE L1 5967 6148 -22 550 298 57 36 chrX 35990682 35990930 -140983210 + MIR SINE MIR 8 260 -2 936 226 40 33 chrX 35990932 35991206 -140982934 - L1MCb LINE L1 -5364 681 406 1009 162 94 27 chrX 35991209 35991472 -140982668 + MLT1B LTR MaLR 5 226 -164 1880 234 96 9 chrX 35991472 35992036 -140982104 + L1MC4 LINE L1 5391 6003 -2039 * 2657 156 24 28 chrX 35991569 35992070 -140982070 + L1MB8 LINE L1 5530 6028 -150 567 228 16 0 chrX 35992099 35992226 -140981914 - L1MD3 LINE L1 -34 7961 7833 2573 205 28 15 chrX 35992228 35992770 -140981370 - L1MD2 LINE L1 -216 6143 5595 1045 93 33 0 chrX 35992778 35992928 -140981212 + L1PA14 LINE L1 5865 6019 -142 189 298 35 0 chrX 35993168 35993225 -140980915 + L2 LINE L2 3255 3313 0 222 250 0 0 chrX 35993239 35993279 -140980861 + L2 LINE L2 3199 3238 -34 397 283 66 13 chrX 35993742 35993894 -140980246 + MER5B DNA MER1_type 1 160 -18 632 187 0 0 chrX 35994194 35994301 -140979839 - AluJb SINE Alu 0 312 206 235 283 0 50 chrX 35996629 35996689 -140977451 - L2 LINE L2 -17 3255 3199 1524 249 100 7 chrX 35997702 35998163 -140975977 - L2 LINE L2 0 3313 2810 218 143 0 0 chrX 35998668 35998703 -140975437 + MIR SINE MIR 110 144 -64 2081 259 72 36 chrX 35998782 35999555 -140974585 + L1MC4a LINE L1 5366 6166 -1642 1231 274 113 34 chrX 35999798 36000364 -140973776 + L3 LINE CR1 429 1039 -538 413 226 95 51 chrX 36000449 36000586 -140973554 - MIR SINE MIR -55 207 65 * 921 175 13 0 chrX 36000582 36000736 -140973404 + MER5A DNA MER1_type 12 167 -22 229 319 14 14 chrX 36000847 36000916 -140973224 - L2 LINE L2 -4 3268 3200 244 272 9 70 chrX 36001251 36001365 -140972775 + L3 LINE CR1 1466 1572 -5 207 0 0 0 chrX 36002327 36002350 -140971790 + (TG)n Simple_repeat Simple_repeat 2 24 0 376 225 171 8 chrX 36003127 36003256 -140970884 - MIR SINE MIR -49 213 64 225 260 0 0 chrX 36004230 36004280 -140969860 + GA-rich Low_complexity Low_complexity 1 50 0 440 272 15 37 chrX 36004582 36004718 -140969422 - MIR SINE MIR -74 188 56 1348 176 0 14 chrX 36004953 36005175 -140968965 - MER20 DNA MER1_type 0 219 1 2019 131 3 34 chrX 36005214 36005535 -140968605 + AluJo SINE Alu 1 311 -1 435 236 77 112 chrX 36005535 36005768 -140968372 + MIR SINE MIR 22 246 -16 1644 67 0 0 chrX 36007534 36007728 -140966412 - AluSc SINE Alu -11 298 105 507 121 0 0 chrX 36007728 36007794 -140966346 - AluS SINE Alu -245 67 2 424 239 73 0 chrX 36008134 36008243 -140965897 - L2 LINE L2 -4 3309 3193 279 0 0 0 chrX 36008616 36008647 -140965493 + (GA)n Simple_repeat Simple_repeat 1 31 0 451 371 26 0 chrX 36009058 36009209 -140964931 - L2 LINE L2 -16 3256 3102 1133 160 27 32 chrX 36009443 36009662 -140964478 + MLT1C LTR MaLR 8 225 -242 * 1419 178 14 31 chrX 36009659 36009945 -140964195 + MLT1C LTR MaLR 187 467 0 2503 224 60 73 chrX 36009945 36010359 -140963781 + MLT1C-int LTR MaLR 1 419 -952 1153 194 54 132 chrX 36010359 36010782 -140963358 - MLT1B LTR MaLR 0 390 1 2503 224 60 73 chrX 36010782 36011470 -140962670 + MLT1C-int LTR MaLR 419 1076 -295 2577 23 0 17 chrX 36011470 36011771 -140962369 - AluY SINE Alu -15 296 1 2503 224 60 73 chrX 36011771 36012064 -140962076 + MLT1C-int LTR MaLR 1076 1371 0 1999 181 20 103 chrX 36012066 36012573 -140961567 + MLT1C LTR MaLR 3 467 0 2178 156 16 16 chrX 36012806 36013171 -140960969 + MLT1A1 LTR MaLR 1 365 0 2191 176 134 13 chrX 36013171 36013619 -140960521 + MLT1A1-int LTR MaLR 1 502 -1233 1930 261 68 18 chrX 36013616 36014186 -140959954 + L1M3b LINE L1 1 599 -5682 * 9045 149 20 33 chrX 36014318 36015011 -140959129 + L1MA7 LINE L1 3656 4357 -1934 1546 156 0 4 chrX 36015011 36015248 -140958892 - MER46A DNA MER2_type 0 236 1 9045 149 20 33 chrX 36015248 36015923 -140958217 + L1MA7 LINE L1 4357 5039 -1252 2254 149 6 43 chrX 36015923 36016272 -140957868 + MER1B DNA MER1_type 2 337 0 9045 149 20 33 chrX 36016272 36017582 -140956558 + L1MA7 LINE L1 5039 6289 -2 310 155 43 6 chrX 36017582 36017695 -140956445 + Charlie5 DNA MER1_type 2378 2530 -82 842 222 62 31 chrX 36017695 36017920 -140956220 + MLT1A1-int LTR MaLR 501 732 -639 413 207 12 0 chrX 36018023 36018105 -140956035 + MLT1A1-int LTR MaLR 682 764 -971 2092 211 53 18 chrX 36018255 36018348 -140955792 + MLT1A1-int LTR MaLR 1269 1357 -378 1595 177 174 19 chrX 36018348 36018710 -140955430 - MER47B DNA MER2_type 0 418 1 2092 211 53 18 chrX 36018710 36019066 -140955074 + MLT1A1-int LTR MaLR 1357 1734 -1 1431 172 23 19 chrX 36019109 36019365 -140954775 + MLT1A1 LTR MaLR 109 365 0 402 268 89 0 chrX 36019755 36019878 -140954262 + MER94 DNA DNA 1 134 0 313 350 60 8 chrX 36020029 36020146 -140953994 + MIR SINE MIR 22 144 -64 485 302 49 54 chrX 36020151 36020356 -140953784 - L3 LINE CR1 -2 1575 1372 303 346 75 37 chrX 36020351 36020565 -140953575 + L3 LINE CR1 1355 1576 -1 * 340 240 180 0 chrX 36022705 36022805 -140951335 - L2 LINE L2 0 3313 3196 431 310 16 16 chrX 36023005 36023134 -140951006 + MIR SINE MIR 8 136 -126 960 295 8 8 chrX 36023790 36024044 -140950096 - MIR SINE MIR -3 259 6 342 0 0 0 chrX 36025686 36025724 -140948416 + (CA)n Simple_repeat Simple_repeat 2 39 0 5186 192 60 13 chrX 36026116 36027109 -140947031 + MER45B DNA AcHobo 1 1040 0 432 269 19 9 chrX 36027857 36027965 -140946175 + L2 LINE L2 2688 2796 -518 930 249 5 33 chrX 36028328 36028541 -140945599 + Charlie8 DNA MER1_type 27 233 -2184 342 98 0 0 chrX 36028615 36028666 -140945474 + (CA)n Simple_repeat Simple_repeat 2 52 0 238 258 0 16 chrX 36029508 36029570 -140944570 + L3 LINE CR1 435 495 -1082 5650 140 13 42 chrX 36029871 36030666 -140943474 + L1MC2 LINE L1 5427 6191 -153 312 27 0 0 chrX 36030666 36030703 -140943437 + (TAA)n Simple_repeat Simple_repeat 1 37 0 5650 140 13 42 chrX 36030703 36030848 -140943292 + L1MC2 LINE L1 6191 6339 -5 225 0 0 0 chrX 36031284 36031309 -140942831 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2294 41 21 14 chrX 36032498 36032789 -140941351 + AluY SINE Alu 1 293 -18 1604 164 50 14 chrX 36034127 36034408 -140939732 - AluJo SINE Alu -21 291 1 569 159 0 0 chrX 36034929 36035017 -140939123 + MIR SINE MIR 61 148 -114 310 225 281 0 chrX 36035162 36035251 -140938889 + MER81 DNA DNA 1 114 0 703 268 81 31 chrX 36035471 36035792 -140938348 - L1MC4a LINE L1 -1831 5977 5641 306 242 0 101 chrX 36036119 36036218 -140937922 + MIR SINE MIR 20 108 -154 299 294 49 35 chrX 36036321 36036464 -140937676 - MIR3 SINE MIR -21 187 43 412 238 217 22 chrX 36037386 36037555 -140936585 - MIR SINE MIR -54 208 6 2003 141 69 24 chrX 36037961 36038294 -140935846 - MER7A DNA MER2_type 0 346 1 219 69 0 0 chrX 36038797 36038826 -140935314 + (TG)n Simple_repeat Simple_repeat 1 29 0 297 131 0 0 chrX 36038826 36038887 -140935253 + (GA)n Simple_repeat Simple_repeat 2 62 0 271 340 30 0 chrX 36039321 36039421 -140934719 - MIR SINE MIR -8 254 152 21 82 0 0 chrX 36039672 36039721 -140934419 + AT_rich Low_complexity Low_complexity 1 49 0 244 286 86 73 chrX 36039757 36039926 -140934214 - MIR SINE MIR -59 149 16 456 307 70 42 chrX 36041390 36041605 -140932535 - MIR SINE MIR -38 224 4 395 275 170 44 chrX 36042349 36042578 -140931562 + MIR SINE MIR 2 259 -3 2794 202 30 56 chrX 36045717 36046326 -140927814 - MLT1E LTR MaLR 0 593 1 4938 186 60 28 chrX 36046578 36046793 -140927347 - L1MD2 LINE L1 -4 6355 6148 297 0 0 0 chrX 36046793 36046826 -140927314 + (TG)n Simple_repeat Simple_repeat 2 34 0 4938 186 60 28 chrX 36046826 36047376 -140926764 - L1MD2 LINE L1 -211 6148 5533 7188 174 10 1 chrX 36047376 36049418 -140924722 - L1PA14 LINE L1 -2 6159 4104 4938 186 60 28 chrX 36049418 36049871 -140924269 - L1MD2 LINE L1 -826 5533 5096 234 265 0 0 chrX 36049950 36050018 -140924122 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 209 57 29 0 chrX 36050274 36050309 -140923831 + (TA)n Simple_repeat Simple_repeat 1 36 0 233 108 15 62 chrX 36050408 36050473 -140923667 + LTR66 LTR ERVL 394 455 -155 206 316 0 0 chrX 36050729 36050786 -140923354 + G-rich Low_complexity Low_complexity 1 57 0 291 28 0 0 chrX 36051127 36051163 -140922977 + (TG)n Simple_repeat Simple_repeat 2 37 0 214 240 13 67 chrX 36052799 36052874 -140921266 + L2 LINE L2 3200 3270 -2 403 250 0 121 chrX 36053786 36053996 -140920144 - MIR SINE MIR -45 163 33 461 296 0 85 chrX 36054542 36054731 -140919409 + MIR3 SINE MIR 10 182 -26 183 374 24 37 chrX 36054747 36054993 -140919147 - L2 LINE L2 -210 3062 2820 411 333 36 5 chrX 36056560 36056755 -140917385 - L2 LINE L2 -2 3311 3111 297 284 9 9 chrX 36056798 36056914 -140917226 - L1MC4a LINE L1 -1340 6468 6353 1564 208 60 57 chrX 36056925 36057473 -140916667 - L1MC4 LINE L1 -7 8035 7486 756 280 49 12 chrX 36057473 36057823 -140916317 - L2 LINE L2 -258 3055 2698 1923 81 24 0 chrX 36057832 36058079 -140916061 + L1PA10 LINE L1 5904 6156 -12 214 182 0 0 chrX 36058092 36058136 -140916004 + A-rich Low_complexity Low_complexity 1 44 0 1797 241 69 14 chrX 36058268 36058761 -140915379 - HAL1 LINE L1 -172 2335 1816 1340 236 74 7 chrX 36058756 36059189 -140914951 - HAL1 LINE L1 -941 1566 1105 * 1789 231 45 105 chrX 36059198 36059929 -140914211 - MER21B LTR ERV1 -149 714 28 2179 98 27 7 chrX 36060014 36060310 -140913830 - L1PA16 LINE L1 -10 6156 5855 3119 231 72 43 chrX 36060318 36060600 -140913540 - HAL1 LINE L1 -1434 1073 800 2597 238 20 40 chrX 36060600 36061205 -140912935 - MLT1E LTR MaLR 0 593 1 3119 231 72 43 chrX 36061205 36061391 -140912749 - HAL1 LINE L1 -1707 800 621 2006 128 0 30 chrX 36061391 36061696 -140912444 + AluSg SINE Alu 1 296 -14 3119 231 72 43 chrX 36061696 36062148 -140911992 - HAL1 LINE L1 -1886 621 126 310 273 106 25 chrX 36062221 36062382 -140911758 - L2 LINE L2 -588 2726 2553 351 313 0 0 chrX 36062636 36062732 -140911408 - MIR SINE MIR -12 250 155 1801 197 27 32 chrX 36063395 36063771 -140910369 - MLT1A2 LTR MaLR 0 374 1 1179 338 165 27 chrX 36064702 36066013 -140908127 - L2 LINE L2 0 3272 1782 256 253 11 35 chrX 36066030 36066117 -140908023 + Charlie7 DNA MER1_type 601 685 -1927 875 275 164 30 chrX 36067422 36067818 -140906322 - MLT1J2 LTR MaLR -1 449 1 15804 38 2 1 chrX 36067859 36070930 -140903210 - L1PA5 LINE L1 0 6154 3081 268 180 60 60 chrX 36070930 36071030 -140903110 + L1MC/D LINE L1 5770 5869 -1939 21 57 0 0 chrX 36071312 36071347 -140902793 + AT_rich Low_complexity Low_complexity 1 35 0 281 312 10 85 chrX 36071386 36071585 -140902555 - L2 LINE L2 -954 2360 2177 389 219 0 0 chrX 36071749 36071822 -140902318 - MER5C DNA MER1_type -248 76 4 245 306 187 14 chrX 36071848 36072057 -140902083 - L2 LINE L2 -1156 2158 1914 253 258 0 0 chrX 36072112 36072174 -140901966 - MIR SINE MIR -15 247 186 2127 91 17 3 chrX 36072789 36073076 -140901064 + AluSg SINE Alu 1 291 -19 535 217 28 0 chrX 36073647 36073753 -140900387 + MIR3 SINE MIR 63 171 -37 962 186 0 0 chrX 36073877 36074049 -140900091 + MSTB1 LTR MaLR 261 432 0 805 191 71 38 chrX 36075414 36075597 -140898543 + MER5A DNA MER1_type 1 189 0 267 271 71 12 chrX 36075597 36075682 -140898458 + MIR SINE MIR 9 98 -164 186 133 0 0 chrX 36075771 36075801 -140898339 + (TG)n Simple_repeat Simple_repeat 2 31 0 461 233 158 8 chrX 36075807 36075940 -140898200 - MIR SINE MIR -92 170 18 286 207 161 0 chrX 36075945 36076032 -140898108 + MIR SINE MIR 101 201 -61 347 220 44 33 chrX 36076721 36076812 -140897328 - L2 LINE L2 0 3272 3181 1054 302 118 9 chrX 36076913 36077544 -140896596 - L2 LINE L2 -4 3309 2608 214 358 28 98 chrX 36078159 36078413 -140895727 - L2 LINE L2 -8 3264 3029 634 309 113 43 chrX 36078422 36078749 -140895391 - L2 LINE L2 0 3272 2923 399 301 27 27 chrX 36079414 36079600 -140894540 - L1ME3A LINE L1 -15 6155 5970 21 57 0 0 chrX 36079694 36079729 -140894411 + AT_rich Low_complexity Low_complexity 1 35 0 2003 236 75 2 chrX 36079756 36080299 -140893841 - L1ME3A LINE L1 -265 5905 5323 576 347 144 5 chrX 36080434 36080837 -140893303 - L2 LINE L2 -586 2728 2270 285 183 0 0 chrX 36080837 36080897 -140893243 + (TG)n Simple_repeat Simple_repeat 2 61 0 1303 141 28 14 chrX 36081025 36081238 -140892902 - MER20 DNA MER1_type 0 219 4 248 227 15 15 chrX 36081307 36081373 -140892767 + (TA)n Simple_repeat Simple_repeat 2 67 0 308 364 68 14 chrX 36081373 36081653 -140892487 - L2 LINE L2 -1089 2225 1931 233 279 121 24 chrX 36081804 36081969 -140892171 + L2 LINE L2 3128 3308 -5 203 214 24 0 chrX 36082247 36082289 -140891851 - L2 LINE L2 -15 3257 3215 333 267 199 0 chrX 36082664 36082795 -140891345 + MIR SINE MIR 51 207 -55 303 280 0 27 chrX 36083693 36083768 -140890372 - L2 LINE L2 -13 3300 3228 343 312 24 58 chrX 36085666 36085871 -140888269 - L3 LINE CR1 -608 969 772 218 207 241 0 chrX 36085870 36085928 -140888212 - L2 LINE L2 0 3272 3201 * 565 249 139 0 chrX 36086091 36086256 -140887884 + MIR SINE MIR 65 252 -10 569 289 99 0 chrX 36086574 36086726 -140887414 - MIR SINE MIR -92 170 4 621 322 157 15 chrX 36086755 36087162 -140886978 - L2 LINE L2 -932 2382 1918 6469 210 91 38 chrX 36087167 36088978 -140885162 + L1MD2 LINE L1 19 1732 -4808 2283 158 8 15 chrX 36088978 36089370 -140884770 + MLT1B LTR MaLR 1 389 -1 6469 210 91 38 chrX 36089370 36089477 -140884663 + L1MD2 LINE L1 1732 1832 -4708 1984 133 136 16 chrX 36089477 36089859 -140884281 + MSTA LTR MaLR 1 428 0 6469 210 91 38 chrX 36089859 36090561 -140883579 + L1MD2 LINE L1 1832 2495 -4045 1555 204 77 0 chrX 36090561 36090900 -140883240 + MLT1A1 LTR MaLR 1 365 0 6469 210 91 38 chrX 36090900 36091050 -140883090 + L1MD2 LINE L1 2495 2636 -3904 2241 140 34 10 chrX 36091050 36091435 -140882705 - L1PA16 LINE L1 -1 6165 5772 6469 210 91 38 chrX 36091435 36091576 -140882564 + L1MD2 LINE L1 2636 3229 -3311 1924 213 61 28 chrX 36091574 36092148 -140881992 + L1MD2 LINE L1 4190 4782 -1758 * 21 0 0 0 chrX 36092214 36092235 -140881905 + AT_rich Low_complexity Low_complexity 1 21 0 551 224 156 24 chrX 36092333 36092628 -140881512 + L1MD2 LINE L1 4752 5085 -1455 * 1774 212 26 6 chrX 36092599 36093199 -140880941 + L1MD2 LINE L1 6077 6740 -13 223 289 52 0 chrX 36093263 36093360 -140880780 - L2 LINE L2 -1662 1652 1551 6322 119 53 51 chrX 36093376 36094608 -140879532 - MER52C LTR ERV1 -44 1234 1 203 196 22 0 chrX 36094695 36094741 -140879399 + GA-rich Low_complexity Low_complexity 5 51 0 494 345 88 42 chrX 36094778 36095132 -140879008 - L2 LINE L2 -2363 951 582 525 233 8 8 chrX 36095345 36095465 -140878675 - MER94 DNA DNA -3 131 12 527 362 99 15 chrX 36095480 36095892 -140878248 - L3 LINE CR1 -947 630 184 866 309 16 82 chrX 36096017 36096396 -140877744 + L2 LINE L2 2916 3269 -3 201 258 155 31 chrX 36096930 36097027 -140877113 + MIR3 SINE MIR 93 201 -7 22 35 0 0 chrX 36097556 36097585 -140876555 + AT_rich Low_complexity Low_complexity 1 29 0 3669 181 18 19 chrX 36097585 36098374 -140875766 - L1MA9 LINE L1 -38 6274 5487 730 319 4 9 chrX 36100282 36100514 -140873626 + MIR SINE MIR 29 259 -3 239 299 205 16 chrX 36100566 36100693 -140873447 + MIR SINE MIR 95 245 -17 560 282 5 46 chrX 36101453 36101539 -140872601 + MIR SINE MIR 2 90 -172 2714 126 27 2 chrX 36101539 36101953 -140872187 + MSTA LTR MaLR 3 426 -2 560 282 5 46 chrX 36101953 36102061 -140872079 + MIR SINE MIR 90 188 -74 579 271 90 0 chrX 36102087 36102253 -140871887 - MIR SINE MIR -38 224 44 558 271 109 26 chrX 36102404 36102633 -140871507 - MIR SINE MIR 0 262 15 193 259 37 19 chrX 36103875 36103929 -140870211 - L2 LINE L2 -82 3190 3136 866 102 29 0 chrX 36104090 36104227 -140869913 + L1MA9 LINE L1 6172 6312 0 672 285 241 22 chrX 36104352 36104717 -140869423 - L2 LINE L2 -13 3300 2856 742 339 52 47 chrX 36104726 36104836 -140869304 - L2 LINE L2 -17 3296 3188 2609 96 74 20 chrX 36104836 36105242 -140868898 - MSTA LTR MaLR 0 428 1 742 339 52 47 chrX 36105242 36105635 -140868505 - L2 LINE L2 -125 3188 2798 1975 50 0 0 chrX 36105635 36105875 -140868265 + L1PA5 LINE L1 5902 6141 -13 742 339 52 47 chrX 36105875 36106308 -140867832 - L2 LINE L2 -515 2798 2355 426 39 0 0 chrX 36106334 36106386 -140867754 + (TG)n Simple_repeat Simple_repeat 1 52 0 188 367 102 20 chrX 36106484 36106631 -140867509 + L2 LINE L2 2813 2971 -343 214 162 0 0 chrX 36107370 36107407 -140866733 + CT-rich Low_complexity Low_complexity 2 38 0 506 243 27 61 chrX 36107903 36108051 -140866089 + L2 LINE L2 3171 3313 0 828 160 134 53 chrX 36109372 36109559 -140864581 + AluJo SINE Alu 86 287 -25 1040 241 63 101 chrX 36110149 36110616 -140863524 - MLT1G1 LTR MaLR -29 520 1 259 210 12 25 chrX 36110619 36110700 -140863440 + CT-rich Low_complexity Low_complexity 4 83 0 345 193 32 12 chrX 36110706 36110824 -140863316 - AluSp/q SINE Alu 0 303 225 578 294 89 28 chrX 36111008 36111290 -140862850 + L2 LINE L2 3012 3310 -3 253 309 168 7 chrX 36111773 36111922 -140862218 + L2 LINE L2 2554 2726 -588 256 133 0 150 chrX 36112064 36112124 -140862016 - L2 LINE L2 0 3313 3263 236 320 202 39 chrX 36112368 36112578 -140861562 - L2 LINE L2 -338 2976 2802 2443 139 31 21 chrX 36112578 36113002 -140861138 + MSTA LTR MaLR 1 428 0 236 320 202 39 chrX 36113002 36113147 -140860993 - L2 LINE L2 -512 2802 2563 267 320 96 47 chrX 36113235 36113579 -140860561 - L2 LINE L2 -1409 1905 1545 516 313 36 16 chrX 36113607 36113799 -140860341 + MIR SINE MIR 11 206 -56 528 253 44 38 chrX 36114388 36114486 -140859654 + MIR SINE MIR 48 149 -113 1799 180 65 31 chrX 36114486 36114869 -140859271 - MSTD LTR MaLR 0 396 1 528 253 44 38 chrX 36114869 36114928 -140859212 + MIR SINE MIR 149 206 -56 377 293 0 0 chrX 36114993 36115075 -140859065 - L2 LINE L2 0 3272 3191 270 189 82 74 chrX 36115313 36115435 -140858705 - LTR67 LTR ERVL -21 536 414 1334 353 63 32 chrX 36115446 36116483 -140857657 - L2 LINE L2 -493 2821 1753 356 309 8 0 chrX 36116561 36116687 -140857453 + L1M4b LINE L1 105 231 -6628 228 191 32 63 chrX 36117087 36117150 -140856990 + L1M4b LINE L1 363 423 -6436 2361 209 51 30 chrX 36117319 36117941 -140856199 + L1M4b LINE L1 977 1611 -5248 736 8 57 8 chrX 36118195 36118317 -140855823 + (TA)n Simple_repeat Simple_repeat 2 129 0 22 70 0 0 chrX 36122396 36122439 -140851701 + AT_rich Low_complexity Low_complexity 1 43 0 691 246 32 37 chrX 36122909 36123134 -140851006 - MIR SINE MIR -30 232 2 269 228 11 76 chrX 36123134 36123222 -140850918 - MIR SINE MIR -74 188 107 237 324 0 36 chrX 36124165 36124276 -140849864 + MIR SINE MIR 104 210 -52 198 103 0 0 chrX 36124872 36124901 -140849239 + (A)n Simple_repeat Simple_repeat 1 29 0 181 254 0 42 chrX 36124905 36124976 -140849164 + L2 LINE L2 2918 2985 -287 383 347 42 5 chrX 36125264 36125457 -140848683 + L2 LINE L2 2586 2785 -529 187 276 236 57 chrX 36125494 36125617 -140848523 + L2 LINE L2 2912 3056 -216 180 125 0 0 chrX 36126203 36126235 -140847905 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 611 214 0 71 chrX 36126790 36126930 -140847210 - MER91B DNA MER1_type -60 130 1 225 216 45 114 chrX 36127616 36127704 -140846436 - MER91A DNA MER1_type -2 194 113 223 341 12 24 chrX 36127815 36127900 -140846240 - MIR SINE MIR -96 166 83 180 111 0 0 chrX 36128910 36128937 -140845203 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 203 208 75 19 chrX 36129182 36129235 -140844905 + MIR3 SINE MIR 151 206 -2 1102 88 17 17 chrX 36131289 36131470 -140842670 + L1PA14 LINE L1 5979 6159 -2 6250 200 53 18 chrX 36131482 36133441 -140840699 - L1MDa LINE L1 -3580 2960 933 300 276 0 66 chrX 36133476 36133552 -140840588 - L1MDa LINE L1 -6343 197 127 1086 227 59 0 chrX 36133559 36133797 -140840343 - L1MDa LINE L1 -5452 1088 837 575 273 12 12 chrX 36133803 36133968 -140840172 - L1MDa LINE L1 -6357 183 19 591 174 14 14 chrX 36133978 36134122 -140840018 + L1MB8 LINE L1 6033 6176 -2 2186 116 0 17 chrX 36134156 36134458 -140839682 + AluSx SINE Alu 1 297 -15 371 377 52 5 chrX 36134652 36134843 -140839297 - MIR SINE MIR -6 256 57 255 306 102 48 chrX 36134860 36135046 -140839094 + L2 LINE L2 3118 3313 0 10113 224 64 39 chrX 36135176 36140015 -140834125 - L1MCb LINE L1 -886 5678 600 800 273 39 58 chrX 36140014 36140612 -140833528 - L1M4b LINE L1 -4080 3058 2473 * 2455 244 24 19 chrX 36140736 36140966 -140833174 - L1M4b LINE L1 -4543 2416 2189 2404 97 0 0 chrX 36140966 36141266 -140832874 + AluSc SINE Alu 1 300 -9 2455 244 24 19 chrX 36141266 36141287 -140832853 - L1M4b LINE L1 -4770 2189 2170 216 0 0 0 chrX 36141287 36141311 -140832829 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2455 244 24 19 chrX 36141311 36141936 -140832204 - L1M4b LINE L1 -4789 2170 1541 488 211 56 7 chrX 36143100 36143242 -140830898 + L1ME4a LINE L1 5956 6104 -17 256 283 0 0 chrX 36143415 36143468 -140830672 + L2 LINE L2 3228 3280 -33 189 0 0 0 chrX 36144102 36144123 -140830017 + (T)n Simple_repeat Simple_repeat 1 21 0 327 130 0 0 chrX 36144574 36144628 -140829512 + (T)n Simple_repeat Simple_repeat 1 54 0 362 250 24 0 chrX 36144999 36145167 -140828973 + CT-rich Low_complexity Low_complexity 2 173 0 475 234 29 0 chrX 36145212 36145383 -140828757 + CT-rich Low_complexity Low_complexity 2 177 0 296 200 0 0 chrX 36145674 36145744 -140828396 + L1MA4 LINE L1 6226 6295 -5 30 0 0 0 chrX 36145744 36145774 -140828366 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chrX 36145991 36146030 -140828110 + AT_rich Low_complexity Low_complexity 1 39 0 956 207 34 0 chrX 36146482 36146719 -140827421 - L1MB7 LINE L1 -19 6165 5921 342 67 0 0 chrX 36147709 36147754 -140826386 + (T)n Simple_repeat Simple_repeat 1 45 0 216 0 0 0 chrX 36150570 36150594 -140823546 + (TG)n Simple_repeat Simple_repeat 1 24 0 2194 90 3 0 chrX 36351036 36351324 -140622816 - AluSp SINE Alu -24 289 1 2224 81 24 0 chrX 36351633 36351929 -140622211 - AluSc SINE Alu -6 303 1 2351 69 0 3 chrX 36351930 36352233 -140621907 - AluY SINE Alu -9 302 1 410 266 48 109 chrX 36352412 36352501 -140621639 + L1 LINE L1 4153 4246 -1900 2417 72 0 0 chrX 36352501 36352806 -140621334 + AluY SINE Alu 1 305 -6 410 266 48 109 chrX 36352806 36352850 -140621290 + L1 LINE L1 4246 4291 -1855 2181 91 0 7 chrX 36352850 36353148 -140620992 + AluSq SINE Alu 1 296 -17 410 266 48 109 chrX 36353148 36353325 -140620815 + L1 LINE L1 4291 4445 -1701 1726 211 112 19 chrX 36353374 36353859 -140620281 - MLT1F LTR MaLR -23 519 1 1919 105 8 0 chrX 36353884 36354150 -140619990 + AluSp SINE Alu 1 268 -45 353 219 37 12 chrX 36354281 36354363 -140619777 - MIR SINE MIR -73 189 106 207 0 0 0 chrX 36354398 36354421 -140619719 + (T)n Simple_repeat Simple_repeat 1 23 0 1585 183 42 0 chrX 36354436 36354721 -140619419 + AluJb SINE Alu 3 299 -13 2105 79 0 7 chrX 36354733 36355011 -140619129 + AluSq SINE Alu 11 286 -27 1583 177 37 0 chrX 36355048 36355319 -140618821 + AluJb SINE Alu 1 281 -31 689 136 0 95 chrX 36355334 36355481 -140618659 - FLAM_C SINE Alu 0 133 1 32 26 0 0 chrX 36355732 36355771 -140618369 + AT_rich Low_complexity Low_complexity 1 39 0 680 204 55 64 chrX 36355935 36356155 -140617985 + L1MC5 LINE L1 6823 7040 -921 977 198 42 58 chrX 36356162 36356248 -140617892 + L1MC5 LINE L1 7621 7707 -254 2306 78 0 7 chrX 36356248 36356554 -140617586 + AluSc SINE Alu 1 304 -5 977 198 42 58 chrX 36356554 36356780 -140617360 + L1MC5 LINE L1 7707 7928 -33 34 19 0 19 chrX 36356870 36356907 -140617233 + AT_rich Low_complexity Low_complexity 1 38 -13 1273 157 3 133 chrX 36356907 36357074 -140617066 - AluJo SINE Alu -12 290 186 245 87 0 22 chrX 36357074 36357120 -140617020 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 1273 157 3 133 chrX 36357120 36357284 -140616856 - AluJo SINE Alu -116 186 2 34 19 0 19 chrX 36357284 36357298 -140616842 + AT_rich Low_complexity Low_complexity 38 51 0 391 276 8 16 chrX 36357298 36357421 -140616719 - FLAM_C SINE Alu -9 124 3 819 155 185 54 chrX 36357529 36357692 -140616448 + L1M4 LINE L1 3107 3247 -2899 1905 140 0 3 chrX 36357692 36357977 -140616163 + AluJb SINE Alu 2 285 -27 819 155 185 54 chrX 36357977 36358157 -140615983 + L1M4 LINE L1 3247 3402 -2744 1988 118 17 7 chrX 36358157 36358454 -140615686 + AluSx SINE Alu 1 300 -12 819 155 185 54 chrX 36358454 36358525 -140615615 + L1M4 LINE L1 3402 3675 -2471 753 87 63 0 chrX 36358523 36358649 -140615491 + L1MA2 LINE L1 5998 6131 -173 * 857 155 68 19 chrX 36358649 36358666 -140615474 + AluSc SINE Alu 118 133 -176 2228 78 10 0 chrX 36358666 36358960 -140615180 + AluSp SINE Alu 1 297 -16 857 155 68 19 chrX 36358960 36359103 -140615037 + AluSc SINE Alu 133 286 -23 5174 136 58 21 chrX 36359103 36359462 -140614678 + L1MA9 LINE L1 5132 5476 -836 1954 147 0 0 chrX 36359462 36359761 -140614379 + AluSx SINE Alu 1 299 -13 5174 136 58 21 chrX 36359761 36359882 -140614258 + L1MA9 LINE L1 5476 5591 -721 2253 86 13 0 chrX 36359882 36360186 -140613954 + AluY SINE Alu 3 310 -1 5174 136 58 21 chrX 36360186 36360793 -140613347 + L1MA9 LINE L1 5591 6259 -53 1381 113 0 5 chrX 36360793 36360997 -140613143 - AluSg/x SINE Alu -14 298 96 2025 115 7 0 chrX 36361166 36361462 -140612678 + AluSx SINE Alu 1 298 -14 1258 172 55 65 chrX 36362214 36362530 -140611610 + AluJb SINE Alu 1 313 0 1197 183 4 32 chrX 36362617 36362863 -140611277 - AluJb SINE Alu -4 308 70 1956 80 0 11 chrX 36362964 36363227 -140610913 + AluSg SINE Alu 36 295 -15 1041 158 13 66 chrX 36363430 36363658 -140610482 - AluJo SINE Alu -8 304 89 531 88 0 0 chrX 36363851 36363919 -140610221 - AluJb SINE Alu -243 69 2 663 179 49 12 chrX 36363922 36364084 -140610056 + Charlie1 DNA MER1_type 2560 2727 -34 1860 141 0 43 chrX 36364286 36364422 -140609718 + AluJb SINE Alu 1 141 -161 1805 140 0 20 chrX 36364422 36364559 -140609581 + AluJb SINE Alu 1 139 -173 2093 97 10 0 chrX 36364559 36364683 -140609457 + AluY SINE Alu 1 122 -189 198 0 0 0 chrX 36364683 36364705 -140609435 + (CAA)n Simple_repeat Simple_repeat 3 24 0 2093 97 10 0 chrX 36364705 36364895 -140609245 + AluY SINE Alu 122 311 0 1805 140 0 20 chrX 36364895 36365057 -140609083 + AluJb SINE Alu 139 294 -18 1860 141 0 43 chrX 36365057 36365225 -140608915 + AluJb SINE Alu 141 292 -10 324 279 6 45 chrX 36365234 36365413 -140608727 - MER31-int LTR ERV1 -3065 1871 1700 324 0 0 0 chrX 36365534 36365570 -140608570 + (TC)n Simple_repeat Simple_repeat 2 37 0 489 103 0 74 chrX 36365571 36365814 -140608326 + (TA)n Simple_repeat Simple_repeat 1 224 0 2172 121 48 70 chrX 36365814 36366206 -140607934 - Tigger3b DNA MER2_type -2458 570 171 930 172 6 0 chrX 36366206 36366363 -140607777 - FRAM SINE Alu -4 162 5 2172 121 48 70 chrX 36366363 36366463 -140607677 - Tigger3b DNA MER2_type -2857 171 113 2055 106 0 3 chrX 36366463 36366745 -140607395 - AluSx SINE Alu -18 294 14 2172 121 48 70 chrX 36366745 36366855 -140607285 - Tigger3b DNA MER2_type -2915 113 2 838 108 0 8 chrX 36366858 36366978 -140607162 + L1MB1 LINE L1 5909 6027 -141 231 208 21 0 chrX 36367217 36367265 -140606875 + CT-rich Low_complexity Low_complexity 3 51 0 2095 95 0 3 chrX 36367267 36367552 -140606588 - AluSx SINE Alu -28 284 1 879 207 0 0 chrX 36367553 36367722 -140606418 - FRAM SINE Alu -6 170 2 26 0 0 0 chrX 36367728 36367754 -140606386 + AT_rich Low_complexity Low_complexity 1 26 0 1863 122 4 4 chrX 36367894 36368172 -140605968 - AluSx SINE Alu -34 278 1 1810 164 3 6 chrX 36368254 36368566 -140605574 - AluJb SINE Alu -1 311 1 215 375 0 14 chrX 36368671 36368743 -140605397 - MER5B DNA MER1_type -87 91 21 1577 149 50 21 chrX 36368922 36369204 -140604936 - AluJb SINE Alu -14 298 9 2074 102 20 3 chrX 36369335 36369628 -140604512 - AluSx SINE Alu -14 298 1 2140 115 0 13 chrX 36369631 36369936 -140604204 - AluSx SINE Alu -11 301 1 744 134 126 0 chrX 36369936 36370055 -140604085 - AluSq/x SINE Alu -176 136 3 2110 112 0 7 chrX 36370241 36370537 -140603603 + AluSx SINE Alu 1 294 -18 2285 100 0 3 chrX 36370537 36370847 -140603293 + AluSx SINE Alu 1 309 -3 2155 89 0 0 chrX 36371022 36371327 -140602813 + AluY SINE Alu 1 305 0 2332 76 0 10 chrX 36371354 36371656 -140602484 + AluSx SINE Alu 1 299 -13 1806 125 7 4 chrX 36371658 36371937 -140602203 + AluSx SINE Alu 1 280 -32 1181 78 0 0 chrX 36372063 36372216 -140601924 + AluSg SINE Alu 1 153 -157 1127 174 23 5 chrX 36372317 36372535 -140601605 - AluJo SINE Alu -89 223 2 2324 73 3 0 chrX 36372763 36373063 -140601077 + AluSg SINE Alu 1 301 -9 2014 113 0 3 chrX 36373821 36374121 -140600019 + AluSx SINE Alu 5 303 -9 2187 97 7 0 chrX 36374231 36374530 -140599610 + AluSx SINE Alu 1 301 -11 1136 102 0 6 chrX 36374536 36374693 -140599447 + AluSg/x SINE Alu 143 298 -14 2384 74 0 3 chrX 36375564 36375874 -140598266 + AluSc SINE Alu 1 309 0 2186 96 0 0 chrX 36376122 36376414 -140597726 + AluSx SINE Alu 1 292 -20 441 156 0 44 chrX 36377122 36377212 -140596928 + AluJ/FRAM SINE Alu 226 311 -1 2046 136 7 0 chrX 36377478 36377786 -140596354 - AluSx SINE Alu -2 310 1 751 169 0 37 chrX 36377937 36378073 -140596067 - FLAM_A SINE Alu -2 131 1 507 249 135 8 chrX 36378386 36378716 -140595424 - LTR16A LTR ERVL 0 450 17 1956 112 25 3 chrX 36378717 36379002 -140595138 - AluSx SINE Alu -21 291 1 293 280 15 61 chrX 36379045 36379177 -140594963 + MIR3 SINE MIR 7 132 -76 465 229 92 0 chrX 36379207 36379316 -140594824 - L2 LINE L2 0 3313 3195 388 233 0 70 chrX 36379919 36380048 -140594092 + MER31-int LTR ERV1 1159 1278 -3658 302 176 29 69 chrX 36380157 36380259 -140593881 + MER31-int LTR ERV1 1290 1387 -3549 1566 178 0 0 chrX 36380264 36380533 -140593607 + AluJb SINE Alu 5 273 -39 27 29 0 0 chrX 36380699 36380733 -140593407 + AT_rich Low_complexity Low_complexity 1 34 0 2251 56 0 3 chrX 36380810 36381119 -140593021 + AluY SINE Alu 1 308 0 373 319 53 47 chrX 36381339 36381508 -140592632 - L1ME LINE L1 -469 5652 5483 2096 131 0 6 chrX 36381589 36381903 -140592237 + AluJb SINE Alu 1 312 0 361 337 124 40 chrX 36381926 36382283 -140591857 - L1ME LINE L1 -3327 2819 2433 463 143 77 44 chrX 36382318 36382409 -140591731 - FRAM SINE Alu -54 122 29 881 201 0 44 chrX 36382514 36382718 -140591422 + AluJo SINE Alu 101 295 -17 1213 218 134 67 chrX 36382857 36383321 -140590819 + MLT1F LTR MaLR 1 495 -47 2071 113 3 7 chrX 36383371 36383673 -140590467 - AluSx SINE Alu -6 306 6 1257 101 0 48 chrX 36383773 36383961 -140590179 - AluY SINE Alu -131 180 2 1708 75 7 106 chrX 36384059 36384351 -140589789 - AluSx SINE Alu -49 263 1 231 143 0 0 chrX 36386567 36386609 -140587531 + Alu SINE Alu 258 299 -3 2031 113 7 0 chrX 36387218 36387509 -140586631 + AluSx SINE Alu 1 293 -19 349 284 20 0 chrX 36387797 36387899 -140586241 - L1M4 LINE L1 -2256 3890 3787 342 263 223 17 chrX 36387899 36388074 -140586066 - MIR SINE MIR -4 258 48 1158 76 0 0 chrX 36388100 36388257 -140585883 - L1PA8 LINE L1 0 6172 6016 203 250 36 36 chrX 36388465 36388549 -140585591 + L2 LINE L2 2810 2893 -421 846 240 20 80 chrX 36388656 36388691 -140585449 - MIR SINE MIR -21 241 205 186 43 0 0 chrX 36388691 36388714 -140585426 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2085 106 14 0 chrX 36388717 36389009 -140585131 - AluSx SINE Alu -16 296 1 846 240 20 80 chrX 36389009 36389219 -140584921 - MIR SINE MIR -59 203 7 1567 185 108 16 chrX 36389304 36389741 -140584399 + L2 LINE L2 2498 2974 -340 1685 237 125 6 chrX 36389752 36390224 -140583916 - REP3 LTR ERV -29 533 6 252 278 130 24 chrX 36390234 36390403 -140583737 + L2 LINE L2 2972 3158 -155 587 215 7 7 chrX 36390463 36390607 -140583533 + L1 LINE L1 2737 2880 -3266 403 133 0 17 chrX 36390607 36390667 -140583473 + AluJo SINE Alu 2 60 -252 1866 87 33 11 chrX 36390671 36390946 -140583194 - AluSx SINE Alu -10 302 22 1666 135 0 4 chrX 36390970 36391230 -140582910 + AluJo SINE Alu 53 311 -1 286 170 0 0 chrX 36391235 36391288 -140582852 + L1 LINE L1 3038 3090 -3056 1814 151 0 0 chrX 36391399 36391684 -140582456 - AluJb SINE Alu -27 285 1 581 192 120 0 chrX 36391686 36391811 -140582329 - MIR SINE MIR -114 148 9 1064 104 7 0 chrX 36391897 36392041 -140582099 + AluSg/x SINE Alu 133 277 -33 6971 116 22 24 chrX 36392062 36392295 -140581845 + L1MC1 LINE L1 5193 5425 -908 2347 87 3 0 chrX 36392295 36392607 -140581533 + AluSp SINE Alu 1 313 0 6971 116 22 24 chrX 36392607 36393021 -140581119 + L1MC1 LINE L1 5425 5838 -495 2256 72 28 0 chrX 36393021 36393312 -140580828 + AluSx SINE Alu 1 299 -13 6971 116 22 24 chrX 36393312 36393341 -140580799 + L1MC1 LINE L1 5838 5866 -467 2216 138 45 22 chrX 36393341 36393697 -140580443 + THE1B LTR MaLR 1 364 0 6971 116 22 24 chrX 36393697 36394153 -140579987 + L1MC1 LINE L1 5866 6333 0 35 24 0 0 chrX 36394914 36394956 -140579184 + AT_rich Low_complexity Low_complexity 1 42 0 1625 170 0 3 chrX 36394984 36395272 -140578868 - AluJo SINE Alu -17 295 9 941 129 0 7 chrX 36395276 36395416 -140578724 - AluJo SINE Alu -173 139 1 1221 113 0 6 chrX 36395883 36396060 -140578080 - AluSq SINE Alu -136 177 2 1841 112 64 13 chrX 36396063 36396189 -140577951 - L1 LINE L1 -1821 4325 4207 1677 121 80 24 chrX 36396189 36396510 -140577630 - AluSx SINE Alu 0 312 1 2140 68 11 0 chrX 36396518 36396843 -140577297 - AluY SINE Alu 0 328 1 1841 112 64 13 chrX 36396843 36397020 -140577120 - L1 LINE L1 -1945 4201 3996 31 58 0 0 chrX 36397238 36397290 -140576850 + AT_rich Low_complexity Low_complexity 1 52 0 466 278 141 96 chrX 36397989 36398921 -140575219 + L1MEd LINE L1 664 1646 -4483 2353 69 0 0 chrX 36400067 36400358 -140573782 + AluY SINE Alu 3 293 -18 366 23 0 0 chrX 36400492 36400535 -140573605 + (TA)n Simple_repeat Simple_repeat 1 43 0 2346 104 7 0 chrX 36400577 36400875 -140573265 - AluSx SINE Alu -12 300 1 758 192 7 7 chrX 36400887 36401033 -140573107 - AluSp/q SINE Alu -11 302 157 465 111 0 0 chrX 36401133 36401196 -140572944 + Alu SINE Alu 236 298 -14 263 227 80 27 chrX 36401196 36401271 -140572869 + MIR SINE MIR 184 262 0 2606 61 0 3 chrX 36401668 36401978 -140572162 + AluY SINE Alu 1 309 -2 2423 93 0 0 chrX 36402190 36402492 -140571648 - AluSq SINE Alu -11 302 1 231 256 141 0 chrX 36404269 36404347 -140569793 - L2 LINE L2 -3 3310 3222 305 331 113 0 chrX 36404410 36404552 -140569588 - L2 LINE L2 -632 2682 2525 284 146 0 0 chrX 36406069 36406110 -140568030 - 5S rRNA rRNA -80 41 1 269 297 72 36 chrX 36406162 36406273 -140567867 - MLT1D LTR MaLR -390 115 1 1112 98 14 0 chrX 36406378 36406521 -140567619 + AluSq/x SINE Alu 1 145 -167 1816 149 66 3 chrX 36406521 36406883 -140567257 - L1 LINE L1 -2137 4009 3625 1599 105 0 0 chrX 36406884 36407253 -140566887 + L1M1 LINE L1 5108 5476 -743 2294 99 3 0 chrX 36407254 36407548 -140566592 + AluSp SINE Alu 2 296 -17 2195 78 14 4 chrX 36407553 36407863 -140566277 + AluSx SINE Alu 1 313 0 2124 125 7 3 chrX 36408207 36408504 -140565636 + AluSx SINE Alu 7 304 -8 751 242 5 0 chrX 36408802 36408988 -140565152 - MER5A DNA MER1_type -2 187 1 333 0 0 0 chrX 36409274 36409311 -140564829 + (CAG)n Simple_repeat Simple_repeat 3 39 0 490 212 248 0 chrX 36409614 36409751 -140564389 + MIR SINE MIR 48 218 -44 2136 119 0 19 chrX 36409857 36410175 -140563965 - AluSx SINE Alu 0 312 1 2665 30 7 3 chrX 36410187 36410489 -140563651 - AluY SINE Alu -8 303 1 704 184 63 87 chrX 36410553 36410760 -140563380 + AluJo SINE Alu 2 203 -109 1643 95 9 0 chrX 36412860 36413070 -140561070 + AluSg/x SINE Alu 85 296 -16 1996 87 8 0 chrX 36413309 36413561 -140560579 + AluSx SINE Alu 42 295 -17 200 329 13 13 chrX 36413868 36413944 -140560196 + MIR SINE MIR 36 111 -151 291 279 54 9 chrX 36415294 36415372 -140558768 + MIR SINE MIR 104 190 -72 2261 107 10 0 chrX 36415372 36415671 -140558469 - AluSx SINE Alu -10 302 1 291 279 54 9 chrX 36415671 36415703 -140558437 + MIR SINE MIR 190 219 -43 344 185 228 0 chrX 36415933 36416025 -140558115 + MER46C DNA MER2_type 86 198 -140 397 204 41 0 chrX 36418045 36418143 -140555997 - U13 snRNA snRNA -2 102 1 591 122 0 0 chrX 36418502 36418584 -140555556 - 5S rRNA rRNA -39 82 1 2402 84 7 0 chrX 36419567 36419864 -140554276 - AluSx SINE Alu -13 299 1 1879 217 104 10 chrX 36420194 36420255 -140553885 - MLT1F LTR MaLR -8 534 480 2273 105 10 3 chrX 36420255 36420561 -140553579 + AluSx SINE Alu 1 308 -4 1879 217 104 10 chrX 36420561 36420987 -140553153 - MLT1F LTR MaLR -62 480 1 24 32 0 0 chrX 36421031 36421062 -140553078 + AT_rich Low_complexity Low_complexity 1 31 0 2067 102 3 20 chrX 36421076 36421370 -140552770 + AluSc SINE Alu 1 289 -20 1815 157 19 32 chrX 36421455 36421768 -140552372 + AluJb SINE Alu 1 309 -3 2525 47 0 50 chrX 36421910 36422229 -140551911 + AluY SINE Alu 1 303 -8 1340 70 0 59 chrX 36422229 36422415 -140551725 + AluY SINE Alu 133 307 -4 2147 124 14 0 chrX 36422487 36422777 -140551363 + AluSx SINE Alu 1 294 -18 2325 104 3 16 chrX 36422892 36423199 -140550941 + AluSx SINE Alu 1 303 -9 1043 91 0 8 chrX 36423201 36423333 -140550807 + AluSq/x SINE Alu 3 133 -179 2105 93 50 0 chrX 36423343 36423623 -140550517 + AluSx SINE Alu 5 298 -14 780 282 103 58 chrX 36423623 36424245 -140549895 + L1M4 LINE L1 3200 3860 -2286 2365 106 0 0 chrX 36424245 36424548 -140549592 + AluSg SINE Alu 1 303 -7 780 282 103 58 chrX 36424548 36424645 -140549495 + L1M4 LINE L1 3860 3951 -2195 895 172 0 0 chrX 36424655 36424789 -140549351 + FLAM_C SINE Alu 1 134 -9 2232 53 45 0 chrX 36424974 36425239 -140548901 + AluY SINE Alu 1 277 -34 205 182 0 0 chrX 36426467 36426500 -140547640 + (TAG)n Simple_repeat Simple_repeat 2 34 0 625 228 28 7 chrX 36426505 36426650 -140547490 - MIR SINE MIR -12 250 103 183 205 0 0 chrX 36426673 36426712 -140547428 + CT-rich Low_complexity Low_complexity 2 40 0 520 297 67 0 chrX 36426768 36426933 -140547207 + MER5B DNA MER1_type 3 178 0 1787 168 17 17 chrX 36427181 36427478 -140546662 - AluJo SINE Alu -15 297 1 2380 105 0 0 chrX 36427526 36427832 -140546308 + AluSx SINE Alu 1 306 -6 1198 107 18 24 chrX 36428148 36428316 -140545824 + AluJb SINE Alu 133 299 -13 252 114 0 0 chrX 36428732 36428767 -140545373 - U2 snRNA snRNA -153 35 1 248 231 0 0 chrX 36429390 36429442 -140544698 - L2 LINE L2 0 3272 3221 963 239 158 25 chrX 36429459 36429732 -140544408 - L2 LINE L2 0 3313 3078 2235 113 7 0 chrX 36429732 36430024 -140544116 - AluJo SINE Alu -18 294 1 963 239 158 25 chrX 36430024 36430423 -140543717 - L2 LINE L2 -235 3078 2563 2648 170 8 82 chrX 36431201 36431507 -140542633 - MER68 LTR ERV1 0 562 235 2032 124 0 29 chrX 36431507 36431814 -140542326 - AluSx SINE Alu 0 312 15 2648 170 8 82 chrX 36431814 36431927 -140542213 - MER68 LTR ERV1 -327 235 115 2453 76 0 10 chrX 36431927 36432230 -140541910 - AluSc SINE Alu -9 300 1 2648 170 8 82 chrX 36432230 36432272 -140541868 - MER68 LTR ERV1 -447 115 71 2014 138 33 7 chrX 36432272 36432576 -140541564 - AluJb SINE Alu 0 312 1 2648 170 8 82 chrX 36432576 36432719 -140541421 - MER68 LTR ERV1 -491 71 1 239 250 68 57 chrX 36433090 36433178 -140540962 + MIR SINE MIR 137 225 -37 22 0 0 0 chrX 36433179 36433201 -140540939 + AT_rich Low_complexity Low_complexity 1 22 0 228 286 143 0 chrX 36433483 36433567 -140540573 + MIR SINE MIR 21 116 -92 2252 103 0 13 chrX 36433585 36433887 -140540253 - AluSx SINE Alu -14 298 1 2398 168 71 37 chrX 36433945 36434492 -140539648 + MER74B LTR ERVL 57 622 0 217 152 22 22 chrX 36434648 36434694 -140539446 + MIR3 SINE MIR 157 202 -6 2294 121 0 3 chrX 36434707 36435014 -140539126 + AluSx SINE Alu 1 306 -6 1411 134 18 0 chrX 36435034 36435257 -140538883 + MSTC LTR MaLR 202 428 0 1944 180 53 13 chrX 36435300 36435694 -140538446 - MLT-int LTR MaLR -11 1724 1315 5963 43 31 4 chrX 36435742 36436494 -140537646 + LTR17 LTR ERV1 1 772 -8 2470 92 0 0 chrX 36436643 36436946 -140537194 + AluY SINE Alu 1 303 -8 461 267 0 0 chrX 36436960 36437065 -140537075 - MLT-int LTR MaLR -952 783 679 2459 94 0 22 chrX 36437147 36437466 -140536674 - AluSx SINE Alu 0 312 1 2893 165 14 95 chrX 36437515 36438168 -140535972 - MSTD-int LTR MaLR -632 739 34 2307 104 0 38 chrX 36438168 36438486 -140535654 - AluSg SINE Alu -2 308 3 2893 165 14 95 chrX 36438486 36438526 -140535614 - MSTD-int LTR MaLR -1337 34 99 1469 176 104 50 chrX 36438526 36438596 -140535544 - MSTD LTR MaLR 0 396 331 2305 118 0 0 chrX 36438596 36438901 -140535239 + AluSx SINE Alu 1 305 -7 1469 176 104 50 chrX 36438901 36439206 -140534934 - MSTD LTR MaLR -65 331 1 2893 165 14 95 chrX 36439206 36439299 -140534841 - MSTD-int LTR MaLR -1271 100 1 1539 193 36 30 chrX 36439299 36439507 -140534633 - MLT1A1 LTR MaLR 0 365 151 2263 107 0 0 chrX 36439507 36439822 -140534318 - AluSx SINE Alu 0 315 1 1539 193 36 30 chrX 36439822 36439974 -140534166 - MLT1A1 LTR MaLR -214 151 1 2335 71 68 10 chrX 36440055 36440366 -140533774 - LTR5 LTR ERVK -639 330 2 5839 73 17 76 chrX 36440367 36441779 -140532361 - SVA Other Other -518 936 53 1116 71 0 0 chrX 36441779 36441947 -140532193 + (GGGAGA)n Simple_repeat Simple_repeat 3 170 0 246 32 0 0 chrX 36442035 36442066 -140532074 + (TC)n Simple_repeat Simple_repeat 2 32 0 1992 156 0 3 chrX 36442066 36442349 -140531791 - AluJb SINE Alu -30 282 1 199 262 48 24 chrX 36442425 36442509 -140531631 - L2 LINE L2 -949 2365 2280 395 306 18 31 chrX 36442510 36442732 -140531408 - L1M4 LINE L1 -3818 2328 2110 24 53 0 0 chrX 36442951 36442989 -140531151 + AT_rich Low_complexity Low_complexity 1 38 0 1554 179 41 21 chrX 36442990 36443280 -140530860 + AluJo SINE Alu 1 296 -16 22 0 0 0 chrX 36443311 36443333 -140530807 + AT_rich Low_complexity Low_complexity 1 22 0 736 161 0 0 chrX 36443343 36443461 -140530679 + FLAM_A SINE Alu 11 128 -14 237 108 0 0 chrX 36443461 36443498 -140530642 + (TA)n Simple_repeat Simple_repeat 2 38 0 2565 61 0 0 chrX 36443548 36443843 -140530297 + AluY SINE Alu 1 295 -16 2405 99 0 3 chrX 36443900 36444204 -140529936 + AluY SINE Alu 1 303 -8 2015 199 88 61 chrX 36444249 36444826 -140529314 + MLT1E LTR MaLR 1 593 0 217 188 62 0 chrX 36444918 36444966 -140529174 + MIR SINE MIR 89 139 -123 192 77 0 0 chrX 36444983 36445009 -140529131 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 2162 125 7 0 chrX 36445009 36445297 -140528843 - AluSx SINE Alu -2 310 21 33 0 0 0 chrX 36446069 36446102 -140528038 + AT_rich Low_complexity Low_complexity 1 33 0 1791 138 65 0 chrX 36446126 36446402 -140527738 - AluJb SINE Alu -18 294 1 914 81 0 0 chrX 36446508 36446619 -140527521 - AluSp/q SINE Alu -12 301 191 2394 81 0 10 chrX 36446930 36447258 -140526882 + AluSx SINE Alu 1 312 0 2272 117 0 10 chrX 36447607 36447914 -140526226 - AluSx SINE Alu -8 304 1 1271 175 14 14 chrX 36448049 36448272 -140525868 + AluJo SINE Alu 84 306 -6 2152 117 9 28 chrX 36448447 36448764 -140525376 + AluSx SINE Alu 1 311 -1 1423 210 103 0 chrX 36448889 36449218 -140524922 - MLT1A1 LTR MaLR -2 363 1 202 231 0 0 chrX 36449443 36449482 -140524658 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 2106 137 3 0 chrX 36449488 36449780 -140524360 - AluJb SINE Alu -19 293 1 306 292 8 23 chrX 36449906 36450036 -140524104 - L2 LINE L2 -174 3098 2971 280 215 102 161 chrX 36450090 36450173 -140523967 + MIR SINE MIR 77 163 -99 2429 90 0 3 chrX 36450173 36450484 -140523656 + AluSg SINE Alu 1 310 0 280 215 102 161 chrX 36450484 36450586 -140523554 + MIR SINE MIR 163 251 -11 231 200 0 0 chrX 36450552 36450592 -140523548 + L2 LINE L2 3263 3302 -11 * 847 104 0 0 chrX 36451001 36451107 -140523033 - FLAM_C SINE Alu -25 118 13 235 298 154 0 chrX 36451433 36451537 -140522603 + L2 LINE L2 3141 3260 -12 350 93 0 0 chrX 36451537 36451591 -140522549 + Alu SINE Alu 249 302 0 2297 94 0 42 chrX 36452142 36452306 -140521834 - AluSg SINE Alu -15 295 148 2534 58 0 0 chrX 36452306 36452597 -140521543 - AluY SINE Alu -20 291 1 2297 94 0 42 chrX 36452597 36452740 -140521400 - AluSg SINE Alu -162 148 1 1762 173 0 27 chrX 36452744 36453045 -140521095 - AluJo SINE Alu -19 293 1 2307 108 0 3 chrX 36453075 36453370 -140520770 + AluSc SINE Alu 1 294 -15 1684 176 11 4 chrX 36453372 36453651 -140520489 - AluJo SINE Alu -30 282 2 2274 114 0 3 chrX 36453880 36454177 -140519963 + AluSq SINE Alu 1 296 -17 2432 93 3 0 chrX 36454178 36454478 -140519662 + AluSx SINE Alu 1 301 -11 1283 155 54 32 chrX 36454653 36454930 -140519210 - MLT1B LTR MaLR -107 283 1 1707 95 63 0 chrX 36455183 36455405 -140518735 - AluSq SINE Alu -77 236 1 2237 97 0 0 chrX 36455405 36455684 -140518456 - AluSq SINE Alu -34 279 1 2293 103 0 0 chrX 36456627 36456927 -140517213 - AluSx SINE Alu -12 300 1 499 314 92 21 chrX 36458624 36458863 -140515277 - MIR SINE MIR -1 261 6 280 281 85 0 chrX 36459115 36459197 -140514943 - L2 LINE L2 -14 3299 3211 392 131 24 24 chrX 36459316 36459400 -140514740 + MER20B DNA MER1_type 694 777 -6 26 0 0 0 chrX 36460037 36460063 -140514077 + AT_rich Low_complexity Low_complexity 1 26 0 1853 150 33 17 chrX 36460240 36460540 -140513600 - AluJo SINE Alu -7 305 1 216 0 0 0 chrX 36460552 36460576 -140513564 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1953 151 0 0 chrX 36460730 36461014 -140513126 + AluJb SINE Alu 12 295 -17 1035 90 96 0 chrX 36461021 36461188 -140512952 + MER41B LTR ERV1 453 635 0 626 81 23 0 chrX 36461188 36461274 -140512866 + MER41B-int LTR ERV1 1 88 -5858 548 125 0 0 chrX 36461269 36461349 -140512791 + MER41B-int LTR ERV1 5408 5487 -459 * 1119 106 116 0 chrX 36461344 36461533 -140512607 + MER41B-int LTR ERV1 5729 5939 -7 3637 98 18 18 chrX 36461539 36462088 -140512052 + MER41B LTR ERV1 1 549 -86 183 42 0 0 chrX 36462090 36462114 -140512026 + (CAA)n Simple_repeat Simple_repeat 2 25 0 656 230 43 72 chrX 36462283 36462387 -140511753 + MIR SINE MIR 60 157 -105 2462 80 0 3 chrX 36462387 36462686 -140511454 - AluSg SINE Alu -12 298 1 656 230 43 72 chrX 36462686 36462790 -140511350 + MIR SINE MIR 157 262 0 369 350 77 9 chrX 36463276 36463553 -140510587 + L1ME3 LINE L1 5557 5849 -317 2519 79 0 7 chrX 36463830 36464133 -140510007 + AluSc SINE Alu 1 301 -8 2030 148 0 16 chrX 36464286 36464603 -140509537 - AluSx SINE Alu 0 312 1 197 196 20 0 chrX 36465244 36465295 -140508845 + CT-rich Low_complexity Low_complexity 3 54 0 265 284 6 11 chrX 36467379 36467555 -140506585 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 282 236 14 7 chrX 36467600 36467740 -140506400 + (TGAA)n Simple_repeat Simple_repeat 1 141 0 241 212 30 0 chrX 36467761 36467827 -140506313 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 192 261 0 0 chrX 36468254 36468319 -140505821 + (TGGG)n Simple_repeat Simple_repeat 3 67 0 876 158 63 6 chrX 36468319 36468477 -140505663 + MER96 DNA MER1_type? 1 167 -8 200 342 13 13 chrX 36468482 36468558 -140505582 + (TGGG)n Simple_repeat Simple_repeat 1 76 0 422 267 6 0 chrX 36468567 36468739 -140505401 + (TGGA)n Simple_repeat Simple_repeat 1 173 0 238 279 14 14 chrX 36468765 36468915 -140505225 + (TGGA)n Simple_repeat Simple_repeat 1 150 0 322 335 39 7 chrX 36468928 36469083 -140505057 + (TGGA)n Simple_repeat Simple_repeat 2 161 0 199 122 0 33 chrX 36469798 36469841 -140504299 - MIR SINE MIR -63 145 104 204 125 0 0 chrX 36470125 36470157 -140503983 + (CCA)n Simple_repeat Simple_repeat 2 33 0 2002 138 13 20 chrX 36470931 36471229 -140502911 + AluJb SINE Alu 1 296 -16 1794 125 0 77 chrX 36471354 36471667 -140502473 - AluJb SINE Alu -23 289 1 1332 84 12 0 chrX 36471796 36471963 -140502177 - AluSg/x SINE Alu -14 296 128 265 256 0 26 chrX 36472704 36472782 -140501358 + (TTCA)n Simple_repeat Simple_repeat 1 76 0 817 261 78 50 chrX 36472830 36473187 -140500953 - L2 LINE L2 -40 3273 2907 27 0 0 0 chrX 36473203 36473230 -140500910 + AT_rich Low_complexity Low_complexity 1 27 0 2387 84 0 7 chrX 36473235 36473531 -140500609 + AluSx SINE Alu 1 294 -18 219 281 49 0 chrX 36473748 36473820 -140500320 + MIR SINE MIR 87 169 -39 2295 100 3 0 chrX 36474334 36474624 -140499516 + AluY SINE Alu 1 291 -20 1927 175 11 3 chrX 36474624 36474973 -140499167 + L1PB4 LINE L1 5777 6128 -28 459 258 32 24 chrX 36474973 36475159 -140498981 + AluSp SINE Alu 1 182 -121 456 183 3 34 chrX 36475159 36475239 -140498901 + L1PB4 LINE L1 6049 6130 -173 2242 108 0 10 chrX 36475239 36475534 -140498606 + AluSx SINE Alu 1 292 -20 456 183 3 34 chrX 36475534 36475566 -140498574 + L1PB4 LINE L1 6130 6278 -25 316 291 47 16 chrX 36475578 36475705 -140498435 + L1ME3A LINE L1 6027 6157 -13 456 248 8 17 chrX 36475947 36476064 -140498076 - MIR SINE MIR -146 116 1 215 194 0 0 chrX 36477758 36477794 -140496346 + (CCG)n Simple_repeat Simple_repeat 2 37 0 245 164 229 0 chrX 36478849 36478910 -140495230 - Charlie2a DNA MER1_type -21 2841 2767 882 193 96 20 chrX 36478918 36479167 -140494973 - Charlie2a DNA MER1_type -1855 1007 740 630 216 118 118 chrX 36479199 36479323 -140494817 - Charlie2a DNA MER1_type -2441 421 298 1131 216 33 39 chrX 36479323 36479657 -140494483 + MER46C DNA MER2_type 5 336 -2 630 216 118 118 chrX 36479657 36479897 -140494243 - Charlie2a DNA MER1_type -2563 299 57 204 243 68 0 chrX 36480366 36480440 -140493700 - MIR SINE MIR -65 197 119 232 255 191 0 chrX 36480552 36480646 -140493494 - MIR SINE MIR -3 259 148 645 249 102 20 chrX 36480660 36480857 -140493283 + MIR SINE MIR 7 219 -43 666 211 101 26 chrX 36480880 36481107 -140493033 - L2 LINE L2 -727 2587 2344 234 304 10 29 chrX 36481073 36481175 -140492965 - MIR SINE MIR -149 113 14 * 331 320 47 52 chrX 36482177 36482349 -140491791 + MER91A DNA MER1_type 1 171 -25 1058 276 89 5 chrX 36482495 36482865 -140491275 - MLT1J2 LTR MaLR 0 450 50 513 277 45 7 chrX 36482961 36483116 -140491024 - MER20B DNA MER1_type -594 189 29 804 224 104 58 chrX 36484135 36484376 -140489764 + MIR SINE MIR 1 252 -10 649 268 77 10 chrX 36484399 36484608 -140489532 + MER46C DNA MER2_type 31 253 -85 450 172 33 73 chrX 36484776 36484927 -140489213 + MER104 DNA Tc2 4 148 -32 463 257 0 66 chrX 36484985 36485137 -140489003 - MIR SINE MIR -51 211 70 235 281 105 26 chrX 36485204 36485318 -140488822 - MIR SINE MIR -67 141 19 396 158 0 0 chrX 36488564 36488640 -140485500 + CT-rich Low_complexity Low_complexity 4 79 0 196 270 142 75 chrX 36490010 36490236 -140483904 + L2 LINE L2 3031 3271 -1 1841 142 0 46 chrX 36490444 36490747 -140483393 + AluJb SINE Alu 1 289 -23 233 343 0 0 chrX 36490752 36490892 -140483248 + (ACTTG)n Simple_repeat Simple_repeat 4 143 0 * 347 316 12 6 chrX 36490869 36491037 -140483103 + (GACTG)n Simple_repeat Simple_repeat 2 170 0 330 244 30 52 chrX 36491424 36491559 -140482581 + MER113 DNA MER1_type? 160 291 -230 211 79 26 26 chrX 36491604 36491642 -140482498 - L2 LINE L2 -9 3304 3267 252 0 0 0 chrX 36494792 36494820 -140479320 + (CA)n Simple_repeat Simple_repeat 1 28 0 226 241 0 0 chrX 36496522 36496580 -140477560 - MLT1D LTR MaLR -260 245 188 881 212 15 10 chrX 36496611 36496809 -140477331 - MLT1D LTR MaLR -293 212 14 2357 110 0 0 chrX 36497771 36498072 -140476068 + AluSx SINE Alu 1 301 -11 984 240 55 88 chrX 36498514 36498592 -140475548 - MLT1D LTR MaLR -2 503 424 2170 126 10 0 chrX 36498592 36498894 -140475246 + AluSx SINE Alu 1 305 -7 984 240 55 88 chrX 36498894 36498997 -140475143 - MLT1D LTR MaLR -81 424 319 2485 94 0 0 chrX 36498997 36499306 -140474834 - AluSc SINE Alu 0 309 1 984 240 55 88 chrX 36499306 36499778 -140474362 - MLT1D LTR MaLR -186 319 3 411 21 0 0 chrX 36500095 36500143 -140473997 + (CA)n Simple_repeat Simple_repeat 2 49 0 1123 159 34 29 chrX 36500865 36501073 -140473067 - MER2 DNA MER2_type -135 210 2 2127 172 18 36 chrX 36502692 36503139 -140471001 - MLT1D LTR MaLR -22 483 45 211 148 57 23 chrX 36503799 36503887 -140470253 + (TATAA)n Simple_repeat Simple_repeat 4 94 0 302 188 73 18 chrX 36503913 36504078 -140470062 + (TA)n Simple_repeat Simple_repeat 2 175 0 2323 84 0 3 chrX 36504314 36504626 -140469514 + AluSx SINE Alu 1 311 0 1082 215 22 54 chrX 36504705 36505021 -140469119 - MLT1D LTR MaLR -1 504 199 398 123 0 0 chrX 36505264 36505329 -140468811 - MLT1D LTR MaLR -360 145 81 2294 94 0 14 chrX 36505337 36505634 -140468506 - AluSx SINE Alu -19 293 1 31 44 0 0 chrX 36505645 36505690 -140468450 + AT_rich Low_complexity Low_complexity 1 45 0 722 110 0 0 chrX 36505691 36505791 -140468349 - U6 snRNA snRNA -7 100 1 2073 125 10 3 chrX 36505817 36506128 -140468012 - L1PB4 LINE L1 -7 6149 5837 339 161 48 0 chrX 36506132 36506194 -140467946 - MLT1D LTR MaLR -543 83 19 2041 125 10 7 chrX 36506496 36506791 -140467349 - AluJb SINE Alu -16 296 1 2350 101 0 0 chrX 36507545 36507842 -140466298 + AluSx SINE Alu 1 297 -15 1988 122 0 24 chrX 36508273 36508585 -140465555 + AluSx SINE Alu 1 305 0 1789 126 4 4 chrX 36509443 36509712 -140464428 + MER66B LTR ERV1 215 483 -3 251 180 0 0 chrX 36511561 36511611 -140462529 - MLT1F1 LTR MaLR -2 565 516 337 195 81 11 chrX 36511613 36511700 -140462440 - MLT1F1 LTR MaLR -313 254 162 430 134 50 42 chrX 36511700 36511819 -140462321 - L1M4 LINE L1 -3141 3005 2886 1503 55 45 0 chrX 36512641 36512843 -140461297 - MER30 DNA MER1_type 0 230 20 1794 107 133 7 chrX 36512943 36513213 -140460927 - AluSg1 SINE Alu -5 304 1 1013 144 8 132 chrX 36513480 36513612 -140460528 + MER20 DNA MER1_type 1 148 -71 2120 225 76 45 chrX 36513612 36514015 -140460125 - MER90 LTR ERV1 0 575 186 2457 53 0 0 chrX 36514015 36514338 -140459802 - AluY SINE Alu 0 323 1 1961 151 3 7 chrX 36514340 36514638 -140459502 - AluJb SINE Alu -15 297 1 2120 225 76 45 chrX 36514638 36514785 -140459355 - MER90 LTR ERV1 -389 186 4 1013 144 8 132 chrX 36514785 36514814 -140459326 + MER20 DNA MER1_type 148 179 -40 2837 139 17 9 chrX 36514814 36515275 -140458865 + MLT1C LTR MaLR 3 467 0 1013 144 8 132 chrX 36515275 36515362 -140458778 + MER20 DNA MER1_type 179 219 0 417 185 104 22 chrX 36515730 36515865 -140458275 + L1MC4a LINE L1 7663 7808 0 2099 145 3 0 chrX 36515873 36516177 -140457963 + AluJb SINE Alu 1 305 -7 1658 153 44 22 chrX 36516230 36516526 -140457614 + AluJb SINE Alu 1 302 0 1726 151 6 66 chrX 36516635 36516766 -140457374 + AluJb SINE Alu 1 138 -174 1422 152 124 12 chrX 36516766 36517023 -140457117 - AluSg1 SINE Alu -23 286 1 1726 151 6 66 chrX 36517023 36517208 -140456932 + AluJb SINE Alu 138 298 -14 1405 164 0 5 chrX 36517209 36517428 -140456712 + AluJb SINE Alu 88 305 -7 282 148 0 0 chrX 36517529 36517583 -140456557 + (A)n Simple_repeat Simple_repeat 1 54 0 331 250 70 62 chrX 36519282 36519410 -140454730 + L2 LINE L2 3183 3311 -2 262 231 0 31 chrX 36519412 36519477 -140454663 + L1ME LINE L1 5615 5677 -444 1876 129 14 4 chrX 36519988 36520268 -140453872 - AluJb SINE Alu -25 287 5 1088 220 40 47 chrX 36520486 36520592 -140453548 + L1M4 LINE L1 2770 2875 -3271 2319 97 3 3 chrX 36520592 36520891 -140453249 - AluSq SINE Alu -14 299 1 1088 220 40 47 chrX 36520891 36521148 -140452992 + L1M4 LINE L1 2875 3132 -3014 1823 140 55 10 chrX 36521148 36521440 -140452700 + AluSq SINE Alu 1 305 -8 1198 173 12 119 chrX 36521444 36521780 -140452360 + AluJo SINE Alu 2 301 -1 1088 220 40 47 chrX 36521780 36521832 -140452308 + L1M4 LINE L1 3135 3188 -2958 2091 109 4 0 chrX 36521836 36522111 -140452029 + AluSx SINE Alu 1 276 -36 1903 150 14 3 chrX 36522333 36522627 -140451513 - AluJb SINE Alu -15 297 1 1607 121 25 8 chrX 36523482 36523722 -140450418 + AluSx SINE Alu 1 244 -68 752 176 15 15 chrX 36523873 36524009 -140450131 - AluJb SINE Alu -6 306 171 1461 119 29 0 chrX 36524193 36524403 -140449737 - AluSq SINE Alu -2 311 96 2237 108 16 0 chrX 36524403 36524709 -140449431 + AluSx SINE Alu 1 311 -1 942 129 0 0 chrX 36524719 36524843 -140449297 + FLAM_C SINE Alu 1 124 -19 27 29 0 0 chrX 36524843 36524877 -140449263 + AT_rich Low_complexity Low_complexity 1 34 0 573 181 11 0 chrX 36525023 36525117 -140449023 + FRAM SINE Alu 60 154 -22 23 0 0 0 chrX 36525129 36525152 -140448988 + AT_rich Low_complexity Low_complexity 1 23 0 2313 95 0 10 chrX 36525157 36525452 -140448688 - AluSg SINE Alu -18 292 1 222 303 13 13 chrX 36525680 36525756 -140448384 + MIR SINE MIR 77 152 -110 28 29 0 0 chrX 36525862 36525897 -140448243 + AT_rich Low_complexity Low_complexity 1 35 0 954 138 86 13 chrX 36525897 36526049 -140448091 - AluSx SINE Alu -149 163 1 2259 160 21 18 chrX 36526090 36526478 -140447662 - MLT1B LTR MaLR -1 389 1 319 261 201 27 chrX 36526671 36526683 -140447457 - HAL1b LINE L1 -28 1320 1311 1980 121 13 26 chrX 36526683 36526852 -140447288 - AluSx SINE Alu -9 303 138 2280 101 0 13 chrX 36526852 36527158 -140446982 - AluSx SINE Alu -10 302 1 1980 121 13 26 chrX 36527158 36527295 -140446845 - AluSx SINE Alu -174 138 1 319 261 201 27 chrX 36527295 36527466 -140446674 - HAL1b LINE L1 -37 1311 1105 1653 167 63 97 chrX 36527621 36527692 -140446448 - MLT1D LTR MaLR -13 492 420 2026 138 0 3 chrX 36527692 36527988 -140446152 - AluJb SINE Alu -13 299 5 1653 167 63 97 chrX 36527988 36528330 -140445810 - MLT1D LTR MaLR -85 420 94 2474 101 0 0 chrX 36528330 36528638 -140445502 - AluSx SINE Alu -4 308 1 1653 167 63 97 chrX 36528638 36528685 -140445455 - MLT1D LTR MaLR -411 94 47 241 296 14 0 chrX 36529158 36529229 -140444911 - MIR3 SINE MIR -21 187 116 2224 116 0 0 chrX 36529373 36529665 -140444475 + AluSq SINE Alu 1 292 -21 812 201 0 19 chrX 36529678 36529832 -140444308 + FRAM SINE Alu 1 151 -15 419 269 31 25 chrX 36529910 36530070 -140444070 - MIR3 SINE MIR -30 178 18 2262 98 0 26 chrX 36530181 36530488 -140443652 - AluSx SINE Alu -13 299 1 215 188 50 100 chrX 36530551 36530631 -140443509 - MIR SINE MIR -76 186 111 5213 138 13 24 chrX 36530724 36531142 -140442998 + L1MB3 LINE L1 5193 5614 -569 2201 139 0 0 chrX 36531142 36531445 -140442695 + AluJb SINE Alu 1 303 -9 5213 138 13 24 chrX 36531445 36531801 -140442339 + L1MB3 LINE L1 5614 5972 -211 1832 147 0 58 chrX 36531801 36531947 -140442193 + AluJo SINE Alu 1 154 -158 2378 73 0 13 chrX 36531947 36532247 -140441893 + AluY SINE Alu 1 296 -15 2438 92 0 0 chrX 36532250 36532553 -140441587 + AluSg SINE Alu 1 303 -7 1832 147 0 58 chrX 36532553 36532715 -140441425 + AluJo SINE Alu 156 295 -17 5213 138 13 24 chrX 36532715 36532934 -140441206 + L1MB3 LINE L1 5972 6176 -7 440 247 40 52 chrX 36533604 36533778 -140440362 - MLT1J2 LTR MaLR -23 427 256 259 278 62 0 chrX 36533837 36533934 -140440206 - MLT1J LTR MaLR -323 188 86 251 325 44 16 chrX 36533993 36534154 -140439986 - MIR SINE MIR -62 146 10 586 212 0 9 chrX 36536766 36536879 -140437261 + L2 LINE L2 3201 3312 -1 2218 113 19 7 chrX 36536902 36537211 -140436929 - AluSq SINE Alu 0 313 1 7526 115 70 101 chrX 36537405 36537656 -140436484 + ERVL LTR ERVL 2313 2570 -3194 183 284 45 15 chrX 36537656 36537723 -140436417 - L3 LINE CR1 -1054 523 455 7526 115 70 101 chrX 36537723 36538033 -140436107 + ERVL LTR ERVL 2570 2888 -2876 2511 85 3 0 chrX 36538033 36538338 -140435802 - AluSg SINE Alu -4 306 1 7526 115 70 101 chrX 36538338 36538691 -140435449 + ERVL LTR ERVL 2888 3251 -2513 1719 152 4 15 chrX 36538691 36538960 -140435180 - AluJb SINE Alu -9 303 38 7526 115 70 101 chrX 36538960 36539048 -140435092 + ERVL LTR ERVL 3251 3340 -2424 1921 145 0 35 chrX 36539048 36539359 -140434781 + AluJb SINE Alu 1 300 -12 7526 115 70 101 chrX 36539359 36539808 -140434332 + ERVL LTR ERVL 3340 3785 -1979 1882 172 148 32 chrX 36539829 36540113 -140434027 + MLT2B1 LTR ERVL 1 251 -269 2233 116 0 0 chrX 36540113 36540422 -140433718 - AluSx SINE Alu 0 309 1 1882 172 148 32 chrX 36540422 36540602 -140433538 + MLT2B1 LTR ERVL 251 520 0 2183 128 7 3 chrX 36541039 36541344 -140432796 - AluSx SINE Alu -6 306 1 1693 148 97 0 chrX 36541434 36541712 -140432428 + AluJo SINE Alu 1 305 -7 2293 116 0 0 chrX 36541992 36542286 -140431854 - AluSx SINE Alu -18 294 1 2201 112 0 3 chrX 36542510 36542804 -140431336 - AluSx SINE Alu -19 293 1 240 257 0 29 chrX 36543577 36543647 -140430493 + MIR SINE MIR 171 238 -24 2327 107 7 0 chrX 36543666 36543966 -140430174 - AluSq SINE Alu -11 302 1 180 279 186 31 chrX 36544023 36544152 -140429988 + L2 LINE L2 2794 2942 -372 799 239 87 41 chrX 36544257 36544626 -140429514 + L1M4 LINE L1 2959 3344 -2802 1895 161 0 41 chrX 36544626 36544943 -140429197 + AluJo SINE Alu 1 304 -8 291 192 0 0 chrX 36545187 36545265 -140428875 + (AATAG)n Simple_repeat Simple_repeat 4 81 0 455 198 104 9 chrX 36545316 36545422 -140428718 - L2 LINE L2 -18 3295 3180 202 301 37 52 chrX 36545430 36545566 -140428574 - L2 LINE L2 -328 2944 2811 409 276 64 19 chrX 36545606 36545762 -140428378 - MIR SINE MIR -14 248 86 1208 198 34 4 chrX 36545778 36546015 -140428125 - AluJo SINE Alu -10 302 59 416 295 8 25 chrX 36646017 36646139 -140328001 + L2 LINE L2 3137 3256 -16 222 91 0 0 chrX 36646142 36646175 -140327965 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 357 316 132 21 chrX 36646570 36646760 -140327380 + MIR SINE MIR 1 211 -51 250 208 0 0 chrX 36646823 36646871 -140327269 + L2 LINE L2 3251 3298 -15 2294 87 3 3 chrX 36648595 36648894 -140325246 - AluSx SINE Alu -13 299 1 1189 37 0 0 chrX 36648894 36649029 -140325111 - AluSq/x SINE Alu -178 135 1 313 342 0 6 chrX 36650422 36650626 -140323514 + GA-rich Low_complexity Low_complexity 1 202 0 259 293 7 40 chrX 36651176 36651303 -140322837 + GA-rich Low_complexity Low_complexity 1 131 -719 2024 98 49 0 chrX 36651303 36651588 -140322552 + AluSx SINE Alu 1 299 -13 259 293 7 40 chrX 36651588 36651600 -140322540 + GA-rich Low_complexity Low_complexity 131 142 -708 2043 113 3 0 chrX 36651600 36651891 -140322249 + AluSx SINE Alu 1 292 -20 259 293 7 40 chrX 36651891 36652056 -140322084 + GA-rich Low_complexity Low_complexity 142 850 0 360 267 38 19 chrX 36652280 36652385 -140321755 - MIR SINE MIR -107 155 49 634 106 0 0 chrX 36652387 36652472 -140321668 + AluJ/FLAM SINE Alu 2 86 -226 2061 133 0 0 chrX 36652610 36652919 -140321221 - AluSx SINE Alu -3 309 1 257 0 30 0 chrX 36652919 36652952 -140321188 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2036 105 0 31 chrX 36652952 36653246 -140320894 - AluSx SINE Alu -27 285 1 373 39 0 0 chrX 36653254 36653306 -140320834 - L1MA6 LINE L1 -2 6298 6247 1501 157 53 11 chrX 36653307 36653469 -140320671 - AluJb SINE Alu -19 293 139 305 24 24 0 chrX 36653469 36653511 -140320629 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 2290 46 0 3 chrX 36653511 36653793 -140320347 - AluY SINE Alu -30 281 1 1501 157 53 11 chrX 36653793 36653910 -140320230 - AluJb SINE Alu -172 140 1 1976 145 0 3 chrX 36654405 36654709 -140319431 - AluJb SINE Alu -9 303 1 868 94 34 0 chrX 36655042 36655159 -140318981 - HSMAR2 DNA Mariner -319 983 863 2415 63 0 0 chrX 36655171 36655470 -140318670 - AluY SINE Alu -12 299 1 2304 72 0 3 chrX 36655471 36655763 -140318377 - AluY SINE Alu -20 291 1 1949 130 0 10 chrX 36655764 36656065 -140318075 - AluSq SINE Alu -15 298 1 455 97 0 0 chrX 36656065 36656127 -140318013 + MER4C LTR ERV1 404 465 0 896 225 49 85 chrX 36656130 36656197 -140317943 - L1MDa LINE L1 -6197 343 275 846 160 0 8 chrX 36656197 36656328 -140317812 - FLAM_A SINE Alu -1 132 3 896 225 49 85 chrX 36656328 36656589 -140317551 - L1MDa LINE L1 -6265 275 27 2317 93 0 3 chrX 36656838 36657149 -140316991 + AluSg SINE Alu 1 310 0 1761 166 0 10 chrX 36657192 36657506 -140316634 + AluJb SINE Alu 1 311 -1 680 253 16 21 chrX 36657509 36657695 -140316445 + PABL_B LTR ERV1 456 640 -27 2097 120 10 0 chrX 36657753 36658061 -140316079 + AluSx SINE Alu 1 311 -1 2181 96 0 7 chrX 36658065 36658368 -140315772 - AluSq SINE Alu -12 301 1 4962 241 24 15 chrX 36658383 36659650 -140314490 - L1MDa LINE L1 -2229 4311 3029 2148 125 0 0 chrX 36659650 36659953 -140314187 - AluSx SINE Alu -9 303 1 4962 241 24 15 chrX 36659953 36660175 -140313965 - L1MDa LINE L1 -3511 3029 2810 2104 90 3 7 chrX 36660179 36660467 -140313673 - AluSc SINE Alu -22 287 1 541 177 48 24 chrX 36660467 36660577 -140313563 - L1M2 LINE L1 -511 5780 5665 1964 104 0 11 chrX 36660577 36660857 -140313283 - AluSp SINE Alu -11 302 26 541 177 48 24 chrX 36660857 36660870 -140313270 - L1M2 LINE L1 -626 5665 5654 689 194 0 8 chrX 36660881 36661010 -140313130 - FLAM_A SINE Alu -2 131 4 2015 112 18 0 chrX 36661025 36661337 -140312803 - AluSx SINE Alu 0 317 1 2116 107 0 0 chrX 36661345 36661634 -140312506 - AluSg SINE Alu -21 289 1 4322 216 52 46 chrX 36661642 36661797 -140312343 - L1MDa LINE L1 -4021 2519 2366 1243 186 22 119 chrX 36661797 36662200 -140311940 + MLT1A1 LTR MaLR 2 365 0 4322 216 52 46 chrX 36662200 36662619 -140311521 - L1MDa LINE L1 -4174 2366 1951 1711 199 21 39 chrX 36662619 36663000 -140311140 + MLT1A2 LTR MaLR 1 374 0 4322 216 52 46 chrX 36663000 36663600 -140310540 - L1MDa LINE L1 -4589 1951 1356 2149 80 26 0 chrX 36663600 36663902 -140310238 - AluSq SINE Alu -3 310 1 4322 216 52 46 chrX 36663902 36663980 -140310160 - L1MDa LINE L1 -5184 1356 1280 1803 151 3 7 chrX 36663980 36664272 -140309868 - AluJb SINE Alu -21 291 1 4322 216 52 46 chrX 36664272 36664403 -140309737 - L1MDa LINE L1 -5260 1280 1125 1722 147 0 18 chrX 36664403 36664714 -140309426 - AluJb SINE Alu 0 306 1 1973 94 3 11 chrX 36664716 36665002 -140309138 - HSMAR2 DNA Mariner -965 337 54 334 190 63 13 chrX 36665002 36665081 -140309059 + L1ME3A LINE L1 3111 3193 -2953 330 139 0 42 chrX 36665087 36665159 -140308981 - HSMAR2 DNA Mariner -1232 70 2 782 263 38 82 chrX 36665159 36665360 -140308780 + L1ME3A LINE L1 5266 5474 -688 2111 98 0 10 chrX 36665360 36665656 -140308484 - AluSx SINE Alu -19 293 1 782 263 38 82 chrX 36665656 36665790 -140308350 + L1ME3A LINE L1 5474 5581 -581 2222 115 0 0 chrX 36665790 36666102 -140308038 - AluSq SINE Alu -1 312 1 782 263 38 82 chrX 36666102 36666191 -140307949 + L1ME3A LINE L1 5581 5672 -490 32975 32 4 3 chrX 36666216 36670504 -140303636 - L1PA4 LINE L1 -2 6153 1858 2233 86 6 19 chrX 36670504 36670818 -140303322 - AluSq SINE Alu -2 311 2 32975 32 4 3 chrX 36670818 36671245 -140302895 - L1PA4 LINE L1 -4297 1858 1433 5483 57 0 0 chrX 36671244 36671926 -140302214 + L1PA4 LINE L1 746 1427 -4719 * 662 212 20 0 chrX 36671924 36672075 -140302065 + L1ME3A LINE L1 5658 5811 -359 * 265 205 45 89 chrX 36672075 36672187 -140301953 + LTR40a LTR ERVL 41 147 -372 240 312 135 28 chrX 36672274 36672489 -140301651 + LTR40a LTR ERVL 186 423 -96 360 0 0 0 chrX 36672491 36672531 -140301609 + (TG)n Simple_repeat Simple_repeat 2 41 0 1168 148 10 15 chrX 36672531 36672733 -140301407 - AluJo SINE Alu -27 285 85 458 65 32 0 chrX 36672790 36672852 -140301288 + LTR40b LTR ERVL 394 457 -5 511 199 23 30 chrX 36672858 36672989 -140301151 + L1ME3A LINE L1 5810 5939 -231 2026 133 3 13 chrX 36672999 36673314 -140300826 + AluSq SINE Alu 1 312 -1 928 151 13 0 chrX 36673391 36673550 -140300590 - FRAM SINE Alu 0 176 16 2201 97 3 3 chrX 36673648 36673948 -140300192 - AluSc SINE Alu -9 300 1 2505 48 0 6 chrX 36674075 36674388 -140299752 - AluY SINE Alu 0 311 1 294 163 0 0 chrX 36674507 36674556 -140299584 - MER90 LTR ERV1 -3 611 563 1327 71 0 0 chrX 36674563 36674731 -140299409 - AluSg/x SINE Alu -11 301 134 2079 115 0 7 chrX 36674731 36675036 -140299104 - AluSq SINE Alu -10 303 1 477 207 0 11 chrX 36675039 36675126 -140299014 - MER90 LTR ERV1 -50 564 479 1423 163 0 4 chrX 36675128 36675367 -140298773 + AluJo SINE Alu 1 238 -74 273 109 0 0 chrX 36675371 36675417 -140298723 + (A)n Simple_repeat Simple_repeat 1 46 0 2127 113 3 10 chrX 36675419 36675729 -140298411 + AluSg SINE Alu 1 308 -2 2302 207 38 4 chrX 36675743 36676212 -140297928 - MER90 LTR ERV1 -129 485 1 780 164 23 64 chrX 36676241 36676412 -140297728 - LTR52 LTR ERVL -11 410 247 1769 152 14 3 chrX 36676415 36676712 -140297428 - AluJb SINE Alu -12 300 1 2310 173 29 62 chrX 36676713 36676782 -140297358 - L1 LINE L1 -768 5378 5308 2081 118 0 3 chrX 36676782 36677078 -140297062 + AluSx SINE Alu 1 295 -17 2310 173 29 62 chrX 36677078 36677407 -140296733 - L1 LINE L1 -838 5308 5000 2057 111 3 0 chrX 36677407 36677695 -140296445 - AluSx SINE Alu -23 289 1 2310 173 29 62 chrX 36677695 36677845 -140296295 - L1 LINE L1 -1146 5000 4847 1032 144 39 62 chrX 36677887 36677937 -140296203 - MSTD LTR MaLR 0 396 346 2208 110 0 0 chrX 36677937 36678236 -140295904 - AluSg SINE Alu -11 299 1 1032 144 39 62 chrX 36678236 36678393 -140295747 - MSTD LTR MaLR -50 346 194 1150 99 93 0 chrX 36678393 36678554 -140295586 + THE1B LTR MaLR 1 176 -188 1898 180 80 34 chrX 36678557 36678996 -140295144 - LTR2B LTR ERV1 0 490 32 54137 54 20 19 chrX 36679015 36683466 -140290674 - Harlequin LTR ERV1 0 6896 2429 2212 50 53 0 chrX 36683466 36683748 -140290392 - AluY SINE Alu -14 297 1 54137 54 20 19 chrX 36683748 36686181 -140287959 - Harlequin LTR ERV1 -4467 2429 1 1919 177 98 30 chrX 36686181 36686611 -140287529 - LTR2B LTR ERV1 0 490 32 11231 91 42 1 chrX 36686660 36688178 -140285962 + THE1B-int LTR MaLR 1 1580 0 2412 99 73 14 chrX 36688178 36688522 -140285618 + THE1B LTR MaLR 1 364 0 865 153 53 0 chrX 36688543 36688693 -140285447 - MSTD LTR MaLR -237 159 2 2618 205 81 39 chrX 36688694 36688910 -140285230 - MSTD-int LTR MaLR 0 1735 1530 2086 117 0 0 chrX 36688910 36689201 -140284939 + AluSx SINE Alu 1 291 -21 2618 205 81 39 chrX 36689201 36689603 -140284537 - MSTD-int LTR MaLR -205 1530 1091 824 159 0 7 chrX 36689593 36689744 -140284396 - L1 LINE L1 -1431 4715 4566 * 1563 164 3 33 chrX 36689756 36690055 -140284085 - AluJb SINE Alu -22 290 1 865 118 0 0 chrX 36690057 36690184 -140283956 - AluJb SINE Alu -180 132 6 1373 172 15 0 chrX 36690189 36690462 -140283678 - L1 LINE L1 -1567 4579 4303 3422 121 28 90 chrX 36690463 36690631 -140283509 + L1MA10 LINE L1 5666 5843 -491 2048 122 3 13 chrX 36690631 36690943 -140283197 + AluSx SINE Alu 1 309 -3 3422 121 28 90 chrX 36690943 36691487 -140282653 + L1MA10 LINE L1 5843 6334 0 1829 164 0 3 chrX 36691498 36691808 -140282332 + AluSx SINE Alu 1 309 -3 2179 92 0 32 chrX 36691864 36692178 -140281962 + AluSq SINE Alu 1 304 -9 1585 171 0 38 chrX 36692178 36692469 -140281671 - AluSx SINE Alu -31 281 1 1929 128 0 10 chrX 36693019 36693316 -140280824 - AluSx SINE Alu -18 294 1 979 128 34 0 chrX 36693321 36693470 -140280670 - AluJ SINE Alu -17 295 142 1734 145 3 7 chrX 36693583 36693873 -140280267 + AluJb SINE Alu 1 289 -23 876 137 15 0 chrX 36693984 36694115 -140280025 - AluJ SINE Alu -169 133 1 2362 78 3 0 chrX 36694354 36694663 -140279477 - AluSp SINE Alu -3 310 1 1522 138 7 39 chrX 36694937 36695219 -140278921 - AluJb SINE Alu -39 273 1 739 139 25 0 chrX 36695245 36695367 -140278773 - L1MB1 LINE L1 -1 6167 6043 2089 110 6 31 chrX 36695375 36695694 -140278446 - AluSx SINE Alu -1 311 1 2104 109 3 3 chrX 36695756 36696050 -140278090 + AluSx SINE Alu 1 294 -18 1311 84 0 0 chrX 36696050 36696217 -140277923 + AluSp SINE Alu 134 300 -13 975 136 0 13 chrX 36696220 36696374 -140277766 - L1MB1 LINE L1 -159 6009 5858 312 265 10 69 chrX 36696523 36696625 -140277515 - MER89-int LTR ERV1 -2536 2111 2016 2086 114 7 0 chrX 36696730 36697038 -140277102 - AluSx SINE Alu -2 310 1 844 108 46 0 chrX 36697038 36697168 -140276972 - AluSq/x SINE Alu -177 136 1 2508 47 0 0 chrX 36697354 36697652 -140276488 + AluY SINE Alu 1 298 -13 234 62 0 0 chrX 36697730 36697762 -140276378 + (TC)n Simple_repeat Simple_repeat 2 33 0 276 30 0 0 chrX 36697769 36697802 -140276338 + (TG)n Simple_repeat Simple_repeat 2 34 0 2048 113 0 7 chrX 36697803 36698096 -140276044 - AluSc SINE Alu -18 291 1 1782 86 0 0 chrX 36698127 36698360 -140275780 - AluSx SINE Alu -78 234 2 2644 150 33 2 chrX 36698360 36698819 -140275321 - L1MB3 LINE L1 -83 6100 5628 21 36 0 0 chrX 36698835 36698863 -140275277 + AT_rich Low_complexity Low_complexity 1 28 0 1791 138 0 4 chrX 36698864 36699147 -140274993 + AluSx SINE Alu 1 282 -30 208 0 0 0 chrX 36699147 36699170 -140274970 + (TAA)n Simple_repeat Simple_repeat 2 180 0 837 167 0 0 chrX 36699215 36699341 -140274799 - FLAM_C SINE Alu -13 130 5 290 304 98 21 chrX 36699355 36699549 -140274591 - MER89-int LTR ERV1 -3190 3611 3403 216 0 0 0 chrX 36700011 36700035 -140274105 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 839 161 20 7 chrX 36700036 36700185 -140273955 - AluJb SINE Alu -25 287 137 1878 141 7 13 chrX 36700401 36700705 -140273435 + AluSx SINE Alu 3 304 -8 2149 105 0 0 chrX 36700731 36701044 -140273096 + AluSx SINE Alu 1 312 0 1841 147 0 3 chrX 36701271 36701557 -140272583 + AluSx SINE Alu 1 285 -27 22 56 0 0 chrX 36701629 36701665 -140272475 + AT_rich Low_complexity Low_complexity 1 36 0 2209 99 3 0 chrX 36701840 36702143 -140271997 - AluSc SINE Alu -5 304 1 254 120 80 0 chrX 36702149 36702199 -140271941 - L1MA3 LINE L1 0 6305 6252 * 931 134 8 3 chrX 36702182 36702199 -140271941 - L1MB7 LINE L1 -336 5844 5829 1782 108 93 0 chrX 36702199 36702468 -140271672 - AluSx SINE Alu -18 294 1 931 134 8 3 chrX 36702468 36702649 -140271491 - L1MB7 LINE L1 -351 5829 5644 2025 129 3 3 chrX 36702649 36702959 -140271181 + AluJb SINE Alu 1 310 -2 229 320 7 20 chrX 36703031 36703168 -140270972 - L1M4 LINE L1 -1519 4627 4491 2207 100 0 7 chrX 36703168 36703467 -140270673 - AluSx SINE Alu -15 297 1 229 320 7 20 chrX 36703467 36703482 -140270658 - L1M4 LINE L1 -1655 4491 4477 261 241 129 35 chrX 36703484 36703600 -140270540 - HAL1b LINE L1 -34 1314 1188 205 167 0 0 chrX 36703678 36703714 -140270426 + (TATG)n Simple_repeat Simple_repeat 1 36 0 219 291 9 27 chrX 36703724 36703834 -140270306 + (CAGAGA)n Simple_repeat Simple_repeat 4 111 0 1777 151 7 3 chrX 36703900 36704205 -140269935 + AluSx SINE Alu 1 306 -6 225 302 17 26 chrX 36704247 36704363 -140269777 - MIR SINE MIR -71 191 77 21 0 0 0 chrX 36704840 36704861 -140269279 + GC_rich Low_complexity Low_complexity 1 21 0 282 29 0 0 chrX 36705497 36705532 -140268608 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 288 0 0 0 chrX 36705531 36705563 -140268577 + (TG)n Simple_repeat Simple_repeat 1 32 0 240 180 0 0 chrX 36706288 36706338 -140267802 - L1ME3 LINE L1 -204 5958 5909 1138 275 70 53 chrX 36706444 36706940 -140267200 - L1ME3 LINE L1 -286 5884 5375 1594 179 16 13 chrX 36706940 36707247 -140266893 - AluJo SINE Alu -4 308 1 1138 275 70 53 chrX 36707247 36707368 -140266772 - L1ME3 LINE L1 -795 5375 5257 339 257 50 40 chrX 36707570 36707671 -140266469 + L1MC/D LINE L1 5640 5741 -2067 228 253 0 46 chrX 36708307 36708394 -140265746 + C-rich Low_complexity Low_complexity 1 83 0 293 176 20 0 chrX 36709310 36709361 -140264779 + MER115 DNA AcHobo 8 59 -634 882 254 49 66 chrX 36709473 36709915 -140264225 + MER115 DNA AcHobo 207 685 -8 316 340 110 11 chrX 36709982 36710208 -140263932 + L2 LINE L2 3006 3313 0 951 170 12 12 chrX 36711502 36711673 -140262467 - L1MB8 LINE L1 -6 6172 6002 313 228 51 0 chrX 36711681 36711760 -140262380 + L2 LINE L2 3209 3291 -22 189 258 0 118 chrX 36711755 36711848 -140262292 - L2 LINE L2 -89 3224 3143 * 319 225 121 55 chrX 36711873 36712015 -140262125 - L2 LINE L2 0 3313 3155 2234 78 3 10 chrX 36712015 36712321 -140261819 + AluSq SINE Alu 1 304 -9 319 225 121 55 chrX 36712321 36712360 -140261780 - L2 LINE L2 -158 3155 3120 338 215 181 62 chrX 36712404 36712548 -140261592 - L2 LINE L2 0 3313 3153 262 209 15 15 chrX 36713925 36713992 -140260148 + C-rich Low_complexity Low_complexity 3 69 0 311 247 139 77 chrX 36714342 36714454 -140259686 + MLT1J LTR MaLR 107 237 -274 2081 123 7 0 chrX 36714454 36714755 -140259385 + AluSq SINE Alu 3 305 -8 311 247 139 77 chrX 36714755 36714836 -140259304 + MLT1J LTR MaLR 237 312 -199 337 250 95 0 chrX 36717968 36718052 -140256088 - MIR SINE MIR 0 262 171 528 259 108 27 chrX 36718247 36718432 -140255708 - MIR SINE MIR -62 200 1 344 247 89 62 chrX 36718448 36718535 -140255605 + MIR SINE MIR 71 154 -108 2273 92 0 16 chrX 36718535 36718851 -140255289 + AluSx SINE Alu 1 311 -1 1916 110 59 7 chrX 36718855 36719145 -140254995 + AluSg SINE Alu 4 308 -2 344 247 89 62 chrX 36719145 36719198 -140254942 + MIR SINE MIR 156 220 -42 1939 134 0 3 chrX 36719205 36719521 -140254619 + AluSx SINE Alu 1 312 0 198 196 0 22 chrX 36719565 36719611 -140254529 - MIR SINE MIR -107 155 111 881 243 16 51 chrX 36719689 36719944 -140254196 + MIR SINE MIR 17 262 0 213 258 21 81 chrX 36720391 36720506 -140253634 + (CAGAGA)n Simple_repeat Simple_repeat 2 103 -73 2266 78 10 0 chrX 36720506 36720799 -140253341 + AluY SINE Alu 1 296 -15 213 258 21 81 chrX 36720799 36720869 -140253271 + (CAGAGA)n Simple_repeat Simple_repeat 103 176 0 2349 77 0 10 chrX 36723064 36723376 -140250764 - AluY SINE Alu 0 311 3 806 189 88 0 chrX 36723379 36723527 -140250613 - AluJb SINE Alu -17 295 135 402 276 50 14 chrX 36725018 36725221 -140248919 - MIR SINE MIR 0 262 51 469 324 0 0 chrX 36725996 36726175 -140247965 + (TTCA)n Simple_repeat Simple_repeat 1 179 0 2266 100 0 3 chrX 36727137 36727447 -140246693 + AluSx SINE Alu 1 309 -3 242 325 31 43 chrX 36727593 36727756 -140246384 + HAL1 LINE L1 3 163 -2344 689 233 5 15 chrX 36728280 36728486 -140245654 + L1MC5 LINE L1 7645 7848 -113 467 245 69 69 chrX 36728496 36728684 -140245456 + L1M4 LINE L1 3074 3261 -2885 370 272 126 46 chrX 36728883 36729032 -140245108 + HAL1 LINE L1 816 952 -1555 2241 96 0 0 chrX 36729032 36729324 -140244816 - AluSx SINE Alu -20 292 1 370 272 126 46 chrX 36729324 36729523 -140244617 + HAL1 LINE L1 952 1192 -1315 1395 141 0 9 chrX 36729523 36729769 -140244371 + AluJb SINE Alu 87 312 0 509 266 181 16 chrX 36729771 36729970 -140244170 + HAL1 LINE L1 1197 1362 -1145 1865 159 3 13 chrX 36729970 36730278 -140243862 + AluJo SINE Alu 1 305 -7 509 266 181 16 chrX 36730278 36730382 -140243758 + HAL1 LINE L1 1362 1550 -957 1520 132 0 60 chrX 36730472 36730530 -140243610 + MER46A DNA MER2_type 1 61 -2670 2094 96 17 7 chrX 36730530 36730823 -140243317 - AluSx SINE Alu -16 296 1 1520 132 0 60 chrX 36730823 36731015 -140243125 + MER46A DNA MER2_type 61 236 0 864 301 88 22 chrX 36731057 36731602 -140242538 + L1MC4a LINE L1 5532 6103 -18 358 292 140 0 chrX 36731746 36731924 -140242216 + MIR SINE MIR 49 251 -11 2337 81 0 3 chrX 36732534 36732842 -140241298 + AluSc SINE Alu 1 307 -2 25 0 0 0 chrX 36732951 36732976 -140241164 + AT_rich Low_complexity Low_complexity 1 25 0 401 290 143 18 chrX 36732986 36733203 -140240937 + L1MC4a LINE L1 5694 5937 -1871 849 203 6 11 chrX 36733222 36733399 -140240741 - MER104 DNA MER2_type -4 176 1 204 330 51 66 chrX 36734184 36734381 -140239759 + L2 LINE L2 2920 3113 -159 328 308 135 26 chrX 36734416 36734572 -140239568 - MIR SINE MIR -1 261 89 1146 270 88 31 chrX 36735057 36735740 -140238400 + L2 LINE L2 2550 3293 -20 888 288 160 19 chrX 36735864 36736157 -140237983 - L2 LINE L2 -245 3068 2818 2182 117 3 3 chrX 36736157 36736466 -140237674 - AluSq SINE Alu -4 309 1 888 288 160 19 chrX 36736466 36736676 -140237464 - L2 LINE L2 -495 2818 2502 266 333 69 87 chrX 36736707 36736983 -140237157 + L2 LINE L2 3001 3271 -1 297 229 0 0 chrX 36739210 36739271 -140234869 - MIR SINE MIR -84 178 118 424 193 12 0 chrX 36739281 36739364 -140234776 + MIR SINE MIR 78 161 -101 640 112 128 40 chrX 36739945 36740070 -140234070 - MER58C DNA MER1_type 0 215 80 1873 144 3 23 chrX 36740420 36740726 -140233414 - AluJb SINE Alu -2 310 11 1856 151 3 16 chrX 36740891 36741195 -140232945 + AluJb SINE Alu 1 300 -12 1904 100 89 0 chrX 36741200 36741481 -140232659 + AluSx SINE Alu 1 306 -6 1404 234 138 13 chrX 36741508 36741906 -140232234 - MLT1J2 LTR MaLR -2 448 1 1428 154 70 32 chrX 36741928 36742240 -140231900 + MER33 DNA MER1_type 1 324 0 2423 113 12 12 chrX 36743194 36743531 -140230609 - MER1B DNA MER1_type 0 337 1 259 390 37 5 chrX 36744690 36744880 -140229260 + MIR SINE MIR 58 253 -9 184 299 134 0 chrX 36744896 36744993 -140229147 + MIR SINE MIR 14 123 -139 463 294 5 54 chrX 36746784 36746968 -140227172 + G-rich Low_complexity Low_complexity 3 177 0 610 182 203 14 chrX 36747391 36747539 -140226601 + MER5B DNA MER1_type 3 178 0 518 283 17 11 chrX 36749289 36749466 -140224674 + CT-rich Low_complexity Low_complexity 3 180 0 241 240 15 15 chrX 36749542 36749820 -140224320 + CT-rich Low_complexity Low_complexity 1 278 0 1946 115 21 7 chrX 36749889 36750175 -140223965 - AluJb SINE Alu -22 290 1 380 357 0 27 chrX 36750175 36750360 -140223780 + C-rich Low_complexity Low_complexity 1 180 0 2441 103 0 0 chrX 36751011 36751321 -140222819 - AluSx SINE Alu -2 310 1 365 308 13 6 chrX 36751351 36751507 -140222633 + CT-rich Low_complexity Low_complexity 2 158 0 300 263 38 31 chrX 36751853 36752013 -140222127 + (TCTCTG)n Simple_repeat Simple_repeat 2 162 0 211 238 9 9 chrX 36752026 36752131 -140222009 + CT-rich Low_complexity Low_complexity 2 106 0 295 78 39 0 chrX 36753795 36753846 -140220294 + CT-rich Low_complexity Low_complexity 1 53 0 224 186 0 0 chrX 36754177 36754220 -140219920 - MIR SINE MIR -114 148 106 478 335 0 0 chrX 36754552 36754731 -140219409 + GA-rich Low_complexity Low_complexity 2 180 0 303 273 0 36 chrX 36754740 36754905 -140219235 + (CAGAGA)n Simple_repeat Simple_repeat 2 160 0 2430 97 0 0 chrX 36755687 36755986 -140218154 - AluSg SINE Alu -11 299 1 2132 128 23 10 chrX 36756077 36756383 -140217757 - AluSx SINE Alu -2 310 1 2183 131 3 0 chrX 36756576 36756882 -140217258 - AluSg SINE Alu -3 307 1 2392 88 3 19 chrX 36756902 36757220 -140216920 - AluSq SINE Alu 0 313 1 2027 146 3 3 chrX 36757222 36757517 -140216623 - AluJb SINE Alu -17 295 1 2636 52 0 3 chrX 36757699 36758004 -140216136 + AluY SINE Alu 1 304 -7 2214 104 0 42 chrX 36758042 36758386 -140215754 - AluSx SINE Alu 0 312 1 461 125 0 0 chrX 36760206 36760278 -140213862 - AluS SINE Alu -6 304 233 1371 117 0 29 chrX 36760312 36760449 -140213691 + AluSx SINE Alu 1 132 -180 2135 106 31 7 chrX 36760449 36760741 -140213399 + AluSg SINE Alu 1 299 -11 1371 117 0 29 chrX 36760741 36760808 -140213332 + AluSx SINE Alu 132 199 -113 492 103 0 0 chrX 36760809 36760877 -140213263 + AluSc SINE Alu 66 133 -176 2121 113 0 47 chrX 36760877 36761195 -140212945 + AluSx SINE Alu 1 303 -9 964 314 60 22 chrX 36761199 36761652 -140212488 - L2 LINE L2 -18 3295 2826 206 182 0 23 chrX 36762147 36762191 -140211949 + (TAA)n Simple_repeat Simple_repeat 3 45 0 606 266 21 84 chrX 36762195 36762306 -140211834 - MIR SINE MIR 0 262 171 2362 65 25 0 chrX 36762306 36762611 -140211529 - AluSp SINE Alu 0 312 1 606 266 21 84 chrX 36762611 36762735 -140211405 - MIR SINE MIR -91 171 41 203 200 127 0 chrX 36765370 36765425 -140208715 + L2 LINE L2 3137 3198 -74 2120 129 17 3 chrX 36765454 36765756 -140208384 - AluSx SINE Alu -6 306 1 2175 127 17 0 chrX 36765883 36766183 -140207957 - AluSx SINE Alu -7 305 1 2109 108 0 54 chrX 36766193 36766400 -140207740 - AluSx SINE Alu 0 330 113 2228 110 3 0 chrX 36766400 36766692 -140207448 - AluSg SINE Alu -17 293 1 2359 103 0 3 chrX 36766692 36766992 -140207148 - AluSx SINE Alu -13 299 1 2109 108 0 54 chrX 36766992 36767130 -140207010 - AluSx SINE Alu -215 115 1 2110 112 7 43 chrX 36767170 36767473 -140206667 - AluSx SINE Alu -20 292 1 2381 103 0 3 chrX 36767491 36767803 -140206337 - AluY SINE Alu 0 311 1 1099 173 25 25 chrX 36767823 36767960 -140206180 - L1MD3 LINE L1 -16 7979 7840 2483 78 16 0 chrX 36767960 36768266 -140205874 + AluY SINE Alu 1 311 0 1099 173 25 25 chrX 36768266 36768365 -140205775 - L1MD3 LINE L1 -154 7841 7743 1658 260 80 30 chrX 36768373 36768912 -140205228 - MLT1E LTR MaLR -13 580 15 2592 136 29 100 chrX 36768975 36769055 -140205085 + L1MD3 LINE L1 6668 6752 -1243 2290 118 0 0 chrX 36769055 36769360 -140204780 - AluSq SINE Alu -8 305 1 2592 136 29 100 chrX 36769360 36769515 -140204625 + L1MD3 LINE L1 6752 6916 -1079 2555 80 0 3 chrX 36769515 36769827 -140204313 + AluSq SINE Alu 1 311 -2 2592 136 29 100 chrX 36769827 36769890 -140204250 + L1MD3 LINE L1 6916 6982 -1013 2368 98 0 0 chrX 36769890 36770187 -140203953 + AluSc SINE Alu 1 297 -12 2592 136 29 100 chrX 36770187 36770324 -140203816 + L1MD3 LINE L1 6982 7049 -946 876 207 0 0 chrX 36770324 36770488 -140203652 + FAM SINE Alu 1 164 -11 2592 136 29 100 chrX 36770488 36770681 -140203459 + L1MD3 LINE L1 7049 7254 -741 646 175 67 0 chrX 36770689 36770809 -140203331 + AluJb SINE Alu 2 129 -183 2043 103 92 0 chrX 36770811 36771092 -140203048 - AluSx SINE Alu -5 307 1 23 0 0 0 chrX 36771092 36771115 -140203025 + AT_rich Low_complexity Low_complexity 1 23 0 2346 64 3 20 chrX 36771120 36771418 -140202722 + AluY SINE Alu 1 293 -18 502 162 27 36 chrX 36771429 36771540 -140202600 + MLT1F1 LTR MaLR 13 122 -445 2303 123 0 0 chrX 36771540 36771848 -140202292 + AluSx SINE Alu 1 308 -4 1595 82 5 0 chrX 36771849 36772044 -140202096 + AluSc SINE Alu 1 196 -113 263 32 0 0 chrX 36772044 36772075 -140202065 - AluY SINE Alu -215 93 63 1315 128 0 39 chrX 36772075 36772279 -140201861 - AluSx SINE Alu -115 197 2 444 37 0 0 chrX 36772285 36772339 -140201801 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2471 87 7 0 chrX 36772341 36772651 -140201489 - AluSx SINE Alu 0 312 1 2332 96 3 3 chrX 36772812 36773113 -140201027 - AluSx SINE Alu -11 301 1 386 259 0 9 chrX 36773117 36773225 -140200915 + L1MEc LINE L1 45 151 -6245 985 178 18 0 chrX 36773225 36773394 -140200746 + AluJb SINE Alu 133 304 -8 480 216 10 0 chrX 36773394 36773491 -140200649 + L1MEc LINE L1 137 234 -6162 1953 113 31 9 chrX 36773505 36773831 -140200309 + L1MB4 LINE L1 5848 6180 0 1976 206 130 51 chrX 36773831 36774238 -140199902 + L1M4 LINE L1 3335 3708 -2438 2367 113 3 0 chrX 36774238 36774549 -140199591 - AluSx SINE Alu 0 312 1 1976 206 130 51 chrX 36774549 36774705 -140199435 + L1M4 LINE L1 3708 3850 -2296 2357 95 0 16 chrX 36774705 36775022 -140199118 + AluSq SINE Alu 1 312 -1 1976 206 130 51 chrX 36775022 36775141 -140198999 + L1M4 LINE L1 3850 4072 -2074 2342 79 30 13 chrX 36775167 36775470 -140198670 - AluSq SINE Alu -5 308 1 1617 140 115 11 chrX 36775471 36775749 -140198391 - AluSg SINE Alu -3 307 1 1236 187 0 9 chrX 36775812 36776026 -140198114 + AluSx SINE Alu 1 212 -100 368 96 0 9 chrX 36776026 36776118 -140198022 + AluSq SINE Alu 78 250 -53 1278 164 0 22 chrX 36776118 36776171 -140197969 + AluJb SINE Alu 85 138 -174 2099 148 0 7 chrX 36776171 36776474 -140197666 + AluSg SINE Alu 1 301 -9 1278 164 0 22 chrX 36776474 36776651 -140197489 + AluJb SINE Alu 138 310 -2 1880 196 53 24 chrX 36776655 36776813 -140197327 + L1M4 LINE L1 4476 4628 -1518 2570 51 14 0 chrX 36776813 36777108 -140197032 - AluSp SINE Alu -14 299 1 1880 196 53 24 chrX 36777108 36777402 -140196738 + L1M4 LINE L1 4628 4941 -1205 2085 119 0 10 chrX 36777415 36777709 -140196431 - AluSx SINE Alu 0 312 22 335 263 47 84 chrX 36777723 36777793 -140196347 + L1ME2 LINE L1 5972 6043 -121 2320 101 0 0 chrX 36777793 36778091 -140196049 - AluSg SINE Alu -12 298 1 335 263 47 84 chrX 36778091 36778139 -140196001 + L1ME2 LINE L1 6043 6091 -73 2479 66 10 13 chrX 36778139 36778444 -140195696 - AluY SINE Alu -7 304 1 335 263 47 84 chrX 36778444 36778514 -140195626 + L1ME2 LINE L1 6091 6154 -10 2736 29 0 22 chrX 36778529 36778845 -140195295 + AluY SINE Alu 1 309 -2 570 233 0 8 chrX 36778867 36778996 -140195144 + AluJo SINE Alu 2 129 -183 323 341 0 11 chrX 36779007 36779095 -140195045 - L1MC4 LINE L1 -1339 6703 6617 2294 81 18 0 chrX 36779095 36779379 -140194761 - AluSq SINE Alu -24 289 1 2416 65 0 7 chrX 36779385 36779679 -140194461 - AluSc SINE Alu -17 292 1 1244 145 0 0 chrX 36779698 36779870 -140194270 + AluJo SINE Alu 130 301 -11 706 144 0 17 chrX 36779875 36779993 -140194147 + AluSg/x SINE Alu 174 289 -21 994 188 53 122 chrX 36780006 36780383 -140193757 + L1MC4a LINE L1 6352 6702 -1106 2249 138 0 0 chrX 36780392 36780704 -140193436 - AluSx SINE Alu 0 312 1 1009 159 7 0 chrX 36780764 36780915 -140193225 + AluJo SINE Alu 6 157 -155 1187 153 0 11 chrX 36780916 36781099 -140193041 + AluJb SINE Alu 115 295 -17 2103 118 3 39 chrX 36781107 36781412 -140192728 + AluSq SINE Alu 1 294 -19 784 208 6 6 chrX 36781414 36781573 -140192567 + AluJo SINE Alu 137 295 -7 2353 111 0 0 chrX 36781585 36781891 -140192249 + AluSq SINE Alu 3 308 -5 2170 130 0 16 chrX 36781894 36782031 -140192109 + AluSx SINE Alu 1 139 -173 9406 24 0 0 chrX 36782031 36783972 -140190168 + L1PA3 LINE L1 4235 6155 0 2170 130 0 16 chrX 36783972 36784149 -140189991 + AluSx SINE Alu 139 310 -2 1911 185 31 24 chrX 36784221 36784494 -140189646 - MER68 LTR ERV1 -148 414 135 2054 120 3 3 chrX 36784494 36784815 -140189325 - AluSx SINE Alu 0 321 1 1911 185 31 24 chrX 36784815 36784923 -140189217 - MER68 LTR ERV1 -427 135 29 1844 103 4 0 chrX 36784985 36785228 -140188912 - AluSx SINE Alu -10 302 59 998 222 63 0 chrX 36785259 36785480 -140188660 - L1MC4 LINE L1 -513 7529 7295 388 94 0 0 chrX 36785480 36785533 -140188607 + AluJo SINE Alu 87 139 -163 1591 85 0 24 chrX 36785538 36785750 -140188390 + AluSq SINE Alu 1 207 -106 1203 95 0 0 chrX 36785750 36785898 -140188242 - AluSq/x SINE Alu -164 148 1 2434 94 0 0 chrX 36785898 36786206 -140187934 - AluSx SINE Alu -4 308 1 849 150 52 0 chrX 36786207 36786380 -140187760 - L1MC4 LINE L1 -828 7214 7033 763 87 0 0 chrX 36786401 36786504 -140187636 - L1MC4 LINE L1 -1153 6889 6787 531 261 29 19 chrX 36786496 36786703 -140187437 + L1 LINE L1 4141 4349 -1797 * 983 196 0 12 chrX 36786724 36786892 -140187248 + FAM SINE Alu 6 171 -14 325 238 29 57 chrX 36786903 36787008 -140187132 + L1 LINE L1 4366 4467 -1679 512 228 20 13 chrX 36787008 36787157 -140186983 + L1MC3 LINE L1 6086 6235 -1550 1929 132 48 0 chrX 36787158 36787453 -140186687 + AluSx SINE Alu 1 309 -3 2135 141 0 10 chrX 36787462 36787775 -140186365 + AluJb SINE Alu 1 310 -2 2364 81 3 19 chrX 36787781 36788088 -140186052 + AluSx SINE Alu 1 302 -10 2402 97 3 0 chrX 36788088 36788398 -140185742 + AluSp SINE Alu 1 312 -1 1096 103 0 0 chrX 36788404 36788540 -140185600 + AluSq/x SINE Alu 1 136 -176 2395 96 0 10 chrX 36788540 36788843 -140185297 + AluSx SINE Alu 1 300 -12 862 148 8 0 chrX 36788846 36788968 -140185172 - AluJo/FLAM SINE Alu -189 123 1 2409 64 7 7 chrX 36788977 36789275 -140184865 - AluSq SINE Alu -15 298 1 1117 209 104 3 chrX 36789399 36789686 -140184454 - L1ME3 LINE L1 -90 6072 5757 380 240 23 38 chrX 36790049 36790171 -140183969 + MIR SINE MIR 31 153 -76 26 0 0 0 chrX 36790179 36790205 -140183935 + AT_rich Low_complexity Low_complexity 1 26 0 2490 59 0 0 chrX 36790205 36790495 -140183645 - AluY SINE Alu -21 290 1 2157 72 11 0 chrX 36790498 36790763 -140183377 - AluSx SINE Alu -6 306 39 1562 279 78 7 chrX 36790784 36791232 -140182908 - MLT1J LTR MaLR -31 480 1 253 257 71 0 chrX 36792467 36792537 -140181603 - MER91B DNA MER1_type -26 164 90 2296 103 3 0 chrX 36792562 36792852 -140181288 + AluSx SINE Alu 2 292 -20 1025 187 21 43 chrX 36792905 36793140 -140181000 + MIR SINE MIR 12 241 -21 292 175 39 10 chrX 36794160 36794263 -140179877 + (TCTCTG)n Simple_repeat Simple_repeat 3 108 0 229 273 29 36 chrX 36794270 36794322 -140179818 + CT-rich Low_complexity Low_complexity 1 52 -86 2542 87 3 0 chrX 36794322 36794634 -140179506 - AluSp SINE Alu 0 313 1 229 273 29 36 chrX 36794634 36794720 -140179420 + CT-rich Low_complexity Low_complexity 52 138 0 210 328 0 0 chrX 36794845 36794903 -140179237 - L2 LINE L2 -92 3180 3123 333 0 0 0 chrX 36794969 36795006 -140179134 + (CA)n Simple_repeat Simple_repeat 2 38 0 562 69 0 0 chrX 36795341 36795413 -140178727 + AluS SINE Alu 24 95 -218 363 20 5 0 chrX 36795413 36795462 -140178678 - AluY SINE Alu -256 44 2 2331 112 0 6 chrX 36795727 36796041 -140178099 - AluSx SINE Alu 0 312 1 240 265 20 51 chrX 36796051 36796149 -140177991 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 838 167 7 21 chrX 36796817 36796961 -140177179 + FLAM_C SINE Alu 1 142 -1 2239 119 10 3 chrX 36797028 36797331 -140176809 + AluSx SINE Alu 1 305 -7 2466 90 0 0 chrX 36797447 36797746 -140176394 + AluSq SINE Alu 1 299 -14 246 269 124 54 chrX 36797766 36798047 -140176093 - L1MC4 LINE L1 -307 7735 7334 225 250 28 14 chrX 36798064 36798136 -140176004 - MIR SINE MIR -71 191 119 189 0 0 0 chrX 36798415 36798436 -140175704 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 386 298 16 25 chrX 36798785 36799030 -140175110 + CT-rich Low_complexity Low_complexity 1 242 0 180 296 0 0 chrX 36799156 36799200 -140174940 - MIR SINE MIR -164 98 55 368 328 17 11 chrX 36799589 36799793 -140174347 + (TCCA)n Simple_repeat Simple_repeat 1 205 0 216 0 0 0 chrX 36800753 36800777 -140173363 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 349 273 12 0 chrX 36801151 36801323 -140172817 + (TGGA)n Simple_repeat Simple_repeat 4 177 0 384 294 7 28 chrX 36801336 36801479 -140172661 + (TGGA)n Simple_repeat Simple_repeat 4 143 0 221 283 0 8 chrX 36801642 36801762 -140172378 + (TGGA)n Simple_repeat Simple_repeat 4 122 0 401 271 94 52 chrX 36801912 36802104 -140172036 - MIR SINE MIR -43 219 20 181 152 0 0 chrX 36802646 36802679 -140171461 - MIR SINE MIR -61 147 115 223 240 0 0 chrX 36803111 36803161 -140170979 + (CTG)n Simple_repeat Simple_repeat 3 52 0 2198 116 0 0 chrX 36805584 36805886 -140168254 - AluSx SINE Alu -10 302 1 372 224 31 31 chrX 36805887 36805985 -140168155 + MIR3 SINE MIR 104 201 -7 260 280 138 5 chrX 36805989 36806179 -140167961 + MIR SINE MIR 39 256 -6 23 0 0 0 chrX 36806304 36806327 -140167813 + AT_rich Low_complexity Low_complexity 1 23 0 268 285 180 23 chrX 36806604 36806776 -140167364 - MIR SINE MIR -5 257 59 278 205 19 28 chrX 36807397 36807485 -140166655 - MIR SINE MIR -60 148 60 256 320 94 8 chrX 36808176 36808304 -140165836 - L2 LINE L2 -214 3058 2920 2285 77 7 3 chrX 36808765 36809062 -140165078 - AluSc SINE Alu -11 298 1 1981 93 0 99 chrX 36809065 36809261 -140164879 - AluSq SINE Alu -12 301 150 2202 111 3 0 chrX 36809261 36809567 -140164573 - AluSg SINE Alu -3 307 1 1981 93 0 99 chrX 36809567 36809704 -140164436 - AluSq SINE Alu -163 150 1 976 245 36 5 chrX 36809704 36810001 -140164139 - L2 LINE L2 -235 3078 2775 628 233 140 40 chrX 36810017 36810245 -140163895 - MIR SINE MIR -1 261 11 247 196 0 0 chrX 36810270 36810316 -140163824 + MIR SINE MIR 205 250 -12 2407 71 0 0 chrX 36810341 36810638 -140163502 - AluY SINE Alu -14 297 1 2319 95 3 0 chrX 36810644 36810949 -140163191 - AluSx SINE Alu -6 306 1 316 240 279 0 chrX 36812661 36812765 -140161375 - MIR3 SINE MIR -37 171 39 281 198 245 28 chrX 36812906 36813012 -140161128 + MIR SINE MIR 22 150 -112 * 1098 332 102 10 chrX 36813010 36813789 -140160351 - L2 LINE L2 0 3272 2397 452 297 38 38 chrX 36814205 36814390 -140159750 - MIR SINE MIR -65 197 13 264 259 213 0 chrX 36814409 36814517 -140159623 - MIR SINE MIR -14 248 118 617 81 40 10 chrX 36814521 36814620 -140159520 + U6 snRNA snRNA 1 102 -5 186 323 21 21 chrX 36814642 36814738 -140159402 - MIR SINE MIR -81 127 32 2149 103 0 22 chrX 36814842 36815161 -140158979 + AluJo SINE Alu 1 312 0 342 45 0 0 chrX 36816043 36816087 -140158053 + (CCG)n Simple_repeat Simple_repeat 1 44 0 207 211 14 14 chrX 36816255 36816326 -140157814 + (CCG)n Simple_repeat Simple_repeat 3 73 0 * 240 253 23 0 chrX 36816314 36816401 -140157739 + (CGG)n Simple_repeat Simple_repeat 1 89 0 198 0 0 0 chrX 36817470 36817492 -140156648 + (CA)n Simple_repeat Simple_repeat 2 23 0 926 112 8 15 chrX 36819545 36819679 -140154461 + FLAM_A SINE Alu 1 133 0 282 270 0 22 chrX 36820217 36820306 -140153834 + MIR SINE MIR 45 131 -131 187 343 46 9 chrX 36821025 36821133 -140153007 + MIR SINE MIR 41 152 -56 2084 172 0 26 chrX 36821306 36821695 -140152445 - L1MB8 LINE L1 0 6178 5800 2196 109 0 6 chrX 36821721 36822033 -140152107 - AluSx SINE Alu -2 310 1 2252 79 0 3 chrX 36822181 36822472 -140151668 - AluY SINE Alu -21 290 1 1666 226 41 68 chrX 36822874 36822943 -140151197 - MLT1D LTR MaLR 0 505 436 2284 73 0 67 chrX 36822943 36823273 -140150867 + AluSg1 SINE Alu 1 308 -1 1666 226 41 68 chrX 36823273 36823633 -140150507 - MLT1D LTR MaLR -69 436 68 2053 102 48 0 chrX 36823641 36823936 -140150204 - AluSx SINE Alu -1 311 3 1783 138 13 20 chrX 36823936 36824101 -140150039 - AluJb SINE Alu -16 296 130 2217 107 0 0 chrX 36824101 36824409 -140149731 - AluSx SINE Alu -4 308 1 1783 138 13 20 chrX 36824409 36824539 -140149601 - AluJb SINE Alu -182 130 1 1666 226 41 68 chrX 36824539 36824625 -140149515 - MLT1D LTR MaLR -437 68 3 381 250 132 26 chrX 36824699 36824851 -140149289 - MIR SINE MIR -73 189 22 2145 114 0 16 chrX 36825423 36825739 -140148401 - AluSx SINE Alu -1 311 1 2443 73 3 3 chrX 36826071 36826384 -140147756 - AluSp SINE Alu 0 313 1 2023 134 0 19 chrX 36826395 36826708 -140147432 - AluSx SINE Alu -5 307 1 315 345 52 0 chrX 36826799 36826915 -140147225 + L2 LINE L2 3151 3272 0 283 258 168 3 chrX 36827498 36827641 -140146499 - MIR3 SINE MIR -79 183 1 24 0 0 0 chrX 36827945 36827969 -140146171 + AT_rich Low_complexity Low_complexity 1 24 0 878 210 101 34 chrX 36827995 36828235 -140145905 - MER46C DNA MER2_type -23 315 54 2407 72 0 0 chrX 36828235 36828539 -140145601 + AluY SINE Alu 1 304 -7 878 210 101 34 chrX 36828539 36828565 -140145575 - MER46C DNA MER2_type -284 54 31 2197 100 3 3 chrX 36828762 36829063 -140145077 - AluSp SINE Alu -12 301 1 400 291 47 20 chrX 36829903 36830051 -140144089 - MIR SINE MIR -96 166 15 874 214 21 83 chrX 36830166 36830503 -140143637 - L1MC5 LINE L1 -28 7933 7618 263 262 195 20 chrX 36830656 36830805 -140143335 + MIR3 SINE MIR 30 204 -4 413 275 112 17 chrX 36830841 36831019 -140143121 + MIR SINE MIR 49 243 -19 626 101 9 0 chrX 36831466 36831575 -140142565 + (TG)n Simple_repeat Simple_repeat 2 111 0 236 280 140 0 chrX 36832221 36832314 -140141826 - MIR SINE MIR -109 153 48 2317 94 0 7 chrX 36832334 36832643 -140141497 - AluSg SINE Alu -3 307 1 210 299 11 46 chrX 36832664 36832751 -140141389 + MIR SINE MIR 48 131 -77 240 259 59 87 chrX 36833301 36833442 -140140698 - MIR3 SINE MIR -11 197 54 180 246 53 18 chrX 36834486 36834543 -140139597 - MIR SINE MIR -115 147 89 2228 100 0 3 chrX 36835082 36835383 -140138757 - AluSq SINE Alu -13 300 1 345 368 88 0 chrX 36836009 36836180 -140137960 - MIR SINE MIR -14 248 63 1128 133 0 0 chrX 36837248 36837413 -140136727 + FRAM SINE Alu 1 165 -1 182 376 32 0 chrX 36837430 36837523 -140136617 - L2 LINE L2 -274 2998 2903 244 309 105 46 chrX 36837558 36837710 -140136430 + L2 LINE L2 3082 3242 -30 520 288 0 65 chrX 36837734 36837832 -140136308 - MIR SINE MIR -13 249 171 2368 82 0 0 chrX 36837832 36838135 -140136005 - AluSx SINE Alu -9 303 1 520 288 0 65 chrX 36838135 36838251 -140135889 - MIR SINE MIR -91 171 49 216 214 0 0 chrX 36838251 36838293 -140135847 + T-rich Low_complexity Low_complexity 1 42 0 412 300 8 17 chrX 36838319 36838439 -140135701 + MIR SINE MIR 34 152 -56 219 333 54 0 chrX 36839653 36839746 -140134394 + MIR SINE MIR 10 107 -155 1355 178 55 20 chrX 36840019 36840075 -140134065 - L1MC3 LINE L1 -2 7783 7730 2218 103 0 7 chrX 36840075 36840375 -140133765 + AluSx SINE Alu 1 298 -14 1355 178 55 20 chrX 36840375 36840790 -140133350 - L1MC3 LINE L1 -55 7730 5814 1329 148 0 130 chrX 36840806 36841130 -140133010 - AluSx SINE Alu -30 282 1 2014 117 7 13 chrX 36841165 36841465 -140132675 + AluSx SINE Alu 1 298 -14 653 194 25 90 chrX 36841487 36841588 -140132552 - L1MC2 LINE L1 -11 6333 6227 2251 83 7 0 chrX 36841588 36841920 -140132220 - AluSq SINE Alu 0 334 1 653 194 25 90 chrX 36841920 36841991 -140132149 - L1MC2 LINE L1 -117 6227 6171 2328 83 3 0 chrX 36841991 36842292 -140131848 - AluSq SINE Alu -11 302 1 653 194 25 90 chrX 36842292 36842317 -140131823 - L1MC2 LINE L1 -173 6171 6146 * 1488 161 68 7 chrX 36842304 36842614 -140131526 - L1MC3 LINE L1 -256 7529 7201 271 277 42 34 chrX 36842616 36842735 -140131405 - MLT1F1 LTR MaLR -434 133 14 2200 86 0 10 chrX 36842810 36843112 -140131028 - AluSq SINE Alu -14 299 1 5651 156 52 84 chrX 36843113 36843655 -140130485 - L1MC3 LINE L1 -1002 6783 6225 2428 64 0 3 chrX 36843655 36843967 -140130173 - AluY SINE Alu 0 311 1 5651 156 52 84 chrX 36843967 36844047 -140130093 - L1MC3 LINE L1 -1560 6225 6144 2168 94 7 10 chrX 36844047 36844344 -140129796 - AluSx SINE Alu -10 302 7 5651 156 52 84 chrX 36844344 36844363 -140129777 - L1MC3 LINE L1 -1641 6144 6126 2169 91 3 3 chrX 36844363 36844683 -140129457 - AluSx SINE Alu 0 320 1 5651 156 52 84 chrX 36844683 36844944 -140129196 - L1MC3 LINE L1 -1659 6126 5858 1680 148 24 24 chrX 36844944 36845235 -140128905 - AluJb SINE Alu -11 301 11 5651 156 52 84 chrX 36845235 36845821 -140128319 - L1MC3 LINE L1 -1927 5858 5339 3875 175 86 22 chrX 36845824 36846594 -140127546 + MER21B LTR ERV1 40 858 -5 2275 86 0 7 chrX 36847137 36847440 -140126700 + AluSx SINE Alu 1 301 -11 2465 60 0 0 chrX 36848489 36848791 -140125349 - AluY SINE Alu -9 302 1 1196 270 98 29 chrX 36848804 36849558 -140124582 - L2 LINE L2 -5 3308 2468 235 242 71 99 chrX 36852295 36852352 -140121788 + MIR SINE MIR 86 143 -119 2242 107 0 0 chrX 36852352 36852651 -140121489 + AluSx SINE Alu 1 299 -13 235 242 71 99 chrX 36852651 36852775 -140121365 + MIR SINE MIR 143 262 0 263 261 11 11 chrX 36855365 36855457 -140118683 + (TG)n Simple_repeat Simple_repeat 2 93 0 2251 92 0 0 chrX 36856620 36856915 -140117225 - AluSx SINE Alu -17 295 1 2139 105 0 3 chrX 36856926 36857221 -140116919 - AluSg SINE Alu -16 294 1 1136 37 7 0 chrX 36857222 36857358 -140116782 - AluSp SINE Alu -176 137 1 199 288 0 45 chrX 36857458 36857524 -140116616 - L2 LINE L2 0 3313 3251 319 227 23 11 chrX 36857587 36857675 -140116465 - L2 LINE L2 -1 3312 3224 208 253 160 0 chrX 36857738 36857813 -140116327 - L2 LINE L2 -2 3311 3225 1385 163 156 0 chrX 36857864 36858134 -140116006 - AluJo SINE Alu 0 312 1 226 262 21 124 chrX 36858239 36858384 -140115756 - MIR3 SINE MIR -76 132 3 207 0 0 0 chrX 36859657 36859680 -140114460 + (GCCTG)n Simple_repeat Simple_repeat 3 25 0 186 43 0 0 chrX 36860210 36860233 -140113907 + (T)n Simple_repeat Simple_repeat 1 23 0 1308 137 40 0 chrX 36861188 36861414 -140112726 - AluSx SINE Alu -77 235 1 189 0 0 0 chrX 36862348 36862369 -140111771 + (TG)n Simple_repeat Simple_repeat 1 21 0 306 359 15 0 chrX 36863304 36863435 -140110705 + MIR SINE MIR 119 251 -11 372 160 10 175 chrX 36864225 36864425 -140109715 - L1MC5 LINE L1 -39 7922 7756 1336 49 0 12 chrX 36864474 36864637 -140109503 - AluSg SINE Alu -139 171 11 364 236 75 55 chrX 36864646 36864845 -140109295 - L1MC5 LINE L1 -426 7535 7333 2121 79 0 7 chrX 36865372 36865649 -140108491 + AluSg SINE Alu 1 275 -35 2321 99 0 0 chrX 36865746 36866048 -140108092 - AluSq SINE Alu -11 302 1 1856 90 0 0 chrX 36866242 36866486 -140107654 + AluY SINE Alu 2 245 -66 2196 122 0 3 chrX 36866589 36866900 -140107240 - AluSg SINE Alu 0 310 1 332 319 7 37 chrX 36867492 36867627 -140106513 + MIR SINE MIR 80 210 -52 1106 259 4 8 chrX 36867677 36867928 -140106212 + MIR SINE MIR 13 262 0 285 339 79 32 chrX 36867891 36868080 -140106060 - MIR SINE MIR -13 249 52 * 2221 113 0 0 chrX 36872009 36872309 -140101831 + AluSq SINE Alu 1 300 -13 1724 126 12 114 chrX 36872897 36873231 -140100909 + AluJo SINE Alu 1 300 -2 1678 80 9 4 chrX 36873277 36873503 -140100637 + AluSg/x SINE Alu 85 311 -1 2208 88 0 3 chrX 36873525 36873819 -140100321 - AluY SINE Alu -18 293 1 1761 176 0 13 chrX 36874168 36874480 -140099660 - AluJb SINE Alu -4 308 1 2157 99 3 13 chrX 36874508 36874811 -140099329 + AluSx SINE Alu 2 301 -11 1176 111 6 28 chrX 36874813 36874993 -140099147 + AluSg/x SINE Alu 135 310 0 373 227 0 0 chrX 36875179 36875254 -140098886 - HsTC2 DNA Tc2 -1823 75 1 277 294 203 43 chrX 36875256 36875532 -140098608 - MLT1L LTR MaLR -76 539 220 184 348 0 45 chrX 36876044 36876133 -140098007 + L2 LINE L2 3138 3222 -50 196 146 98 0 chrX 36880453 36880494 -140093646 - MIR3 SINE MIR -48 160 116 210 208 0 0 chrX 36880680 36880733 -140093407 + GA-rich Low_complexity Low_complexity 2 54 0 1708 172 3 3 chrX 36880884 36881169 -140092971 + AluJb SINE Alu 1 285 -27 243 61 0 0 chrX 36881169 36881202 -140092938 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 628 269 30 41 chrX 36881713 36881792 -140092348 + MIR SINE MIR 20 98 -164 2267 85 0 13 chrX 36881792 36882098 -140092042 - AluSx SINE Alu -10 302 1 628 269 30 41 chrX 36882098 36882215 -140091925 + MIR SINE MIR 98 214 -48 21 0 0 0 chrX 36882244 36882265 -140091875 + AT_rich Low_complexity Low_complexity 1 21 0 1940 157 3 0 chrX 36882285 36882591 -140091549 + AluJb SINE Alu 6 312 0 2358 97 3 0 chrX 36883590 36883900 -140090240 - AluSq SINE Alu -2 311 1 480 209 76 9 chrX 36883948 36884053 -140090087 - MIR SINE MIR -63 145 34 204 40 0 0 chrX 36885102 36885127 -140089013 + (GGA)n Simple_repeat Simple_repeat 1 25 0 213 354 0 0 chrX 36885157 36885256 -140088884 + GA-rich Low_complexity Low_complexity 2 100 0 227 306 0 0 chrX 36885678 36885727 -140088413 - L2 LINE L2 -3 3310 3262 777 272 117 11 chrX 36886032 36886392 -140087748 - L2 LINE L2 -413 2901 2504 347 303 59 2 chrX 36886381 36886567 -140087573 - MIR SINE MIR -28 234 2 * 2041 123 0 3 chrX 36886645 36886938 -140087202 + AluJb SINE Alu 1 292 -20 1836 124 3 54 chrX 36886971 36887289 -140086851 + AluSx SINE Alu 1 303 0 634 336 33 0 chrX 36887290 36887564 -140086576 + L1MC/D LINE L1 5433 5715 -2093 918 273 28 12 chrX 36887718 36887967 -140086173 + MIR SINE MIR 7 259 -3 837 280 108 36 chrX 36887985 36888179 -140085961 - L1MC4a LINE L1 -1870 5938 5759 2036 101 0 44 chrX 36888179 36888495 -140085645 + AluSx SINE Alu 1 302 -10 837 280 108 36 chrX 36888495 36888772 -140085368 - L1MC4a LINE L1 -2049 5759 5433 2225 107 0 10 chrX 36888773 36889081 -140085059 - AluSx SINE Alu -7 305 1 196 344 109 16 chrX 36889112 36889304 -140084836 - L2 LINE L2 -1390 1924 1715 602 269 18 6 chrX 36889369 36889540 -140084600 + MIR SINE MIR 56 228 -34 34 0 0 0 chrX 36889757 36889791 -140084349 + GC_rich Low_complexity Low_complexity 1 34 0 449 340 63 59 chrX 36891335 36891993 -140082147 + L1M4c LINE L1 930 1721 -4592 357 351 40 7 chrX 36892420 36892568 -140081572 - L2 LINE L2 -21 3292 3140 296 267 79 109 chrX 36892632 36892730 -140081410 - L2 LINE L2 0 3313 3220 2110 72 65 0 chrX 36892730 36893008 -140081132 + AluSp SINE Alu 2 297 -16 296 267 79 109 chrX 36893008 36893074 -140081066 - L2 LINE L2 -93 3220 3154 348 291 7 73 chrX 36893174 36893325 -140080815 - L2 LINE L2 -8 3305 3165 834 212 6 0 chrX 36893361 36893526 -140080614 + MIR SINE MIR 91 256 -6 520 283 48 21 chrX 36894063 36894250 -140079890 + MIR SINE MIR 47 238 -24 416 273 38 38 chrX 36894562 36894694 -140079446 + MIR3 SINE MIR 7 138 -70 1250 265 30 56 chrX 36894697 36895005 -140079135 - L2 LINE L2 -5 3308 3014 2440 79 0 0 chrX 36895005 36895309 -140078831 + AluSc SINE Alu 1 304 -5 1250 265 30 56 chrX 36895309 36895461 -140078679 - L2 LINE L2 -299 3014 2860 214 204 330 0 chrX 36895457 36895545 -140078595 + MIR SINE MIR 143 259 -3 * 310 274 142 0 chrX 36896934 36897047 -140077093 + MIR SINE MIR 19 147 -61 549 311 62 0 chrX 36897088 36897281 -140076859 + MIR SINE MIR 33 237 -25 551 227 102 11 chrX 36897325 36897501 -140076639 + MIR SINE MIR 67 258 -4 2342 62 7 0 chrX 36897521 36897812 -140076328 + AluSp SINE Alu 1 293 -20 2159 134 0 0 chrX 36899199 36899535 -140074605 + AluJb SINE Alu 5 340 0 2366 97 0 0 chrX 36899538 36899847 -140074293 + AluSx SINE Alu 1 309 -3 295 235 385 0 chrX 36899998 36900185 -140073955 + L2 LINE L2 2485 2743 -571 622 176 38 94 chrX 36900185 36900344 -140073796 - AluJo SINE Alu -43 269 120 309 294 20 75 chrX 36900359 36900505 -140073635 + L2 LINE L2 3133 3270 -43 185 83 28 0 chrX 36900854 36900890 -140073250 + (TA)n Simple_repeat Simple_repeat 2 38 0 21 36 0 0 chrX 36903571 36903599 -140070541 + GC_rich Low_complexity Low_complexity 1 28 0 2346 66 13 0 chrX 36904098 36904399 -140069741 - AluSx SINE Alu -7 305 1 1106 148 21 11 chrX 36906548 36906737 -140067403 - AluJo SINE Alu -121 191 1 1539 241 73 33 chrX 36906788 36906895 -140067245 - L2 LINE L2 0 3313 3212 2301 88 10 0 chrX 36906895 36907189 -140066951 + AluSx SINE Alu 4 300 -12 1539 241 73 33 chrX 36907189 36907653 -140066487 - L2 LINE L2 -101 3212 2726 229 142 0 151 chrX 36907732 36907769 -140066371 + L1MC4 LINE L1 6614 6655 -1387 2223 102 3 0 chrX 36907769 36908064 -140066076 + AluSx SINE Alu 1 296 -16 2127 106 0 7 chrX 36908066 36908359 -140065781 + AluSp SINE Alu 1 291 -22 229 142 0 151 chrX 36908359 36908424 -140065716 + L1MC4 LINE L1 6656 6703 -1339 393 242 0 63 chrX 36908460 36908555 -140065585 + L1MC4 LINE L1 6614 6702 -1340 421 287 26 19 chrX 36908560 36908719 -140065421 - L1MC4 LINE L1 -1339 6983 1922 326 214 0 0 chrX 36908697 36908753 -140065387 - L1MC4 LINE L1 -1333 6989 6934 * 1859 145 0 0 chrX 36908759 36909035 -140065105 - AluJb SINE Alu -36 276 1 2393 233 86 46 chrX 36909035 36909789 -140064351 - L2 LINE L2 -777 2537 1748 2279 74 27 0 chrX 36909789 36910086 -140064054 + AluSx SINE Alu 1 305 -7 2393 233 86 46 chrX 36910086 36910120 -140064020 - L2 LINE L2 -1566 1748 1717 183 129 0 0 chrX 36914136 36914167 -140059973 + (CACCAT)n Simple_repeat Simple_repeat 3 33 0 1768 156 13 7 chrX 36914574 36914881 -140059259 - AluJo SINE Alu -3 309 1 355 244 57 16 chrX 36916007 36916031 -140058109 + MER91B DNA MER1_type 46 68 -122 2029 100 3 55 chrX 36916031 36916342 -140057798 - AluSx SINE Alu -17 295 1 355 244 57 16 chrX 36916342 36916440 -140057700 + MER91B DNA MER1_type 68 173 -17 626 269 24 18 chrX 36917115 36917282 -140056858 - MIR SINE MIR -35 227 60 583 242 113 60 chrX 36918548 36918669 -140055471 - MER46C DNA MER2_type -17 321 208 2369 72 7 0 chrX 36918669 36918973 -140055167 + AluSp SINE Alu 1 306 -7 583 242 113 60 chrX 36918973 36919039 -140055101 - MER46C DNA MER2_type -130 208 147 1864 152 0 52 chrX 36919039 36919184 -140054956 + AluJo SINE Alu 1 152 -160 2420 70 0 10 chrX 36919184 36919497 -140054643 + AluSg SINE Alu 1 310 0 1864 152 0 52 chrX 36919497 36919680 -140054460 + AluJo SINE Alu 152 312 0 583 242 113 60 chrX 36919680 36919793 -140054347 - MER46C DNA MER2_type -191 147 4 855 132 0 31 chrX 36919923 36920052 -140054088 + FLAM_C SINE Alu 1 125 -8 953 111 0 7 chrX 36920287 36920422 -140053718 - AluJo SINE Alu -178 134 1 200 328 0 0 chrX 36920425 36920486 -140053654 + MIR SINE MIR 83 143 -65 452 336 48 60 chrX 36920786 36921023 -140053117 + L2 LINE L2 2898 3136 -177 2363 90 6 0 chrX 36921023 36921334 -140052806 - AluSp SINE Alu 0 313 1 1836 173 20 0 chrX 36921334 36921635 -140052505 - AluJb SINE Alu -5 307 1 2360 79 0 0 chrX 36921640 36921943 -140052197 - AluSg1 SINE Alu -6 303 1 452 336 48 60 chrX 36921943 36922118 -140052022 + L2 LINE L2 3139 3312 -1 258 279 156 16 chrX 36922119 36922241 -140051899 + MIR SINE MIR 18 156 -106 2225 135 0 0 chrX 36927760 36928072 -140046068 + AluSx SINE Alu 1 312 0 184 406 31 0 chrX 36928312 36928408 -140045732 - MIR SINE MIR -96 166 68 1904 119 48 20 chrX 36929510 36929804 -140044336 + AluSg SINE Alu 1 302 -8 724 215 8 0 chrX 36929897 36930027 -140044113 - FLAM_C SINE Alu -2 131 1 981 181 6 0 chrX 36930038 36930209 -140043931 - FRAM SINE Alu -10 166 1 766 223 60 80 chrX 36930241 36930306 -140043834 - L1ME1 LINE L1 -55 6111 6046 1465 164 47 43 chrX 36930306 36930605 -140043535 + AluJo SINE Alu 1 300 -12 766 223 60 80 chrX 36930605 36930903 -140043237 - L1ME1 LINE L1 -120 6046 5755 911 192 112 69 chrX 36930905 36931181 -140042959 - AluJo SINE Alu -4 308 21 1099 186 46 65 chrX 36931183 36931237 -140042903 - L1ME1 LINE L1 -404 5762 5708 1295 197 51 109 chrX 36931237 36931263 -140042877 + MLT1B LTR MaLR 1 27 -363 183 42 0 0 chrX 36931263 36931287 -140042853 + (TA)n Simple_repeat Simple_repeat 2 25 0 1977 112 7 3 chrX 36931287 36931602 -140042538 - AluSq SINE Alu 0 316 1 1295 197 51 109 chrX 36931602 36931985 -140042155 + MLT1B LTR MaLR 25 388 -2 1099 186 46 65 chrX 36931985 36932136 -140042004 - L1ME1 LINE L1 -458 5708 5562 2089 81 10 39 chrX 36932136 36932444 -140041696 + AluSp SINE Alu 1 299 -14 1099 186 46 65 chrX 36932444 36932544 -140041596 - L1ME1 LINE L1 -604 5562 5462 1558 63 0 0 chrX 36934286 36934477 -140039663 - L1PA5 LINE L1 0 6154 5964 323 321 36 0 chrX 36935108 36935220 -140038920 + MIR SINE MIR 2 117 -145 2703 69 3 16 chrX 36935231 36935564 -140038576 + L1PA13 LINE L1 5805 6134 -29 1884 112 68 0 chrX 36935564 36935842 -140038298 - AluSx SINE Alu -15 297 1 2703 69 3 16 chrX 36935842 36935872 -140038268 + L1PA13 LINE L1 6134 6163 0 2269 92 0 19 chrX 36935878 36936218 -140037922 + AluY SINE Alu 1 311 0 2867 156 48 94 chrX 36936383 36936536 -140037604 - L1MB8 LINE L1 -1 6177 6018 1571 175 7 21 chrX 36936536 36936671 -140037469 + AluJb SINE Alu 2 137 -175 2192 112 0 13 chrX 36936671 36936984 -140037156 + AluSc SINE Alu 1 309 0 1571 175 7 21 chrX 36936984 36937133 -140037007 + AluJb SINE Alu 137 282 -30 279 79 0 0 chrX 36937133 36937171 -140036969 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1834 135 14 3 chrX 36937181 36937469 -140036671 - 7SLRNA srpRNA srpRNA -13 307 17 2867 156 48 94 chrX 36937469 36937989 -140036151 - L1MB8 LINE L1 -168 6010 5467 1769 151 0 33 chrX 36937989 36938288 -140035852 - AluSx SINE Alu -23 289 1 1974 141 10 0 chrX 36938297 36938596 -140035544 - AluSx SINE Alu -10 302 1 2867 156 48 94 chrX 36938596 36938712 -140035428 - L1MB8 LINE L1 -719 5459 5339 1969 147 79 108 chrX 36938712 36939006 -140035134 + MLT1D LTR MaLR 3 304 -201 1893 83 8 0 chrX 36939006 36939258 -140034882 + AluSq SINE Alu 52 305 -8 2379 53 40 0 chrX 36939260 36939559 -140034581 + AluY SINE Alu 1 311 0 1969 147 79 108 chrX 36939559 36939779 -140034361 + MLT1D LTR MaLR 305 505 0 2867 156 48 94 chrX 36939779 36939823 -140034317 - L1MB8 LINE L1 -838 5340 5360 317 207 17 0 chrX 36939829 36939887 -140034253 + L1MC4 LINE L1 6640 6698 -1344 2035 113 3 3 chrX 36939887 36940170 -140033970 - AluSx SINE Alu -29 283 1 2074 83 4 0 chrX 36940201 36940466 -140033674 - AluY SINE Alu -45 266 1 2253 100 0 0 chrX 36940466 36940756 -140033384 - AluSg SINE Alu -20 290 1 690 239 46 10 chrX 36940756 36941044 -140033096 - L1M4 LINE L1 -1970 4987 1996 325 259 12 0 chrX 36941047 36941126 -140033014 - LTR42 LTR ERVL 0 495 416 838 235 45 10 chrX 36941126 36941483 -140032657 + LTR2 LTR ERV1 1 401 -48 2435 111 5 13 chrX 36941486 36941874 -140032266 + Harlequin LTR ERV1 1 385 -6511 19072 164 15 2 chrX 36941942 36945328 -140028812 + Harlequin LTR ERV1 336 3740 -4073 1253 148 0 0 chrX 36945319 36945515 -140028625 - Harlequin LTR ERV1 -3061 4752 4557 * 985 168 0 0 chrX 36945530 36945691 -140028449 - Harlequin LTR ERV1 -5428 2385 2225 18468 150 6 21 chrX 36945712 36945827 -140028313 + Harlequin LTR ERV1 3736 3851 -3962 2404 69 0 3 chrX 36945827 36946130 -140028010 + AluY SINE Alu 1 302 -9 18468 150 6 21 chrX 36946130 36950168 -140023972 + Harlequin LTR ERV1 3851 7811 -2 1247 235 121 10 chrX 36950168 36950572 -140023568 + LTR2 LTR ERV1 1 449 0 570 202 18 0 chrX 36950572 36950681 -140023459 - LTR42 LTR ERVL -76 419 309 408 216 0 0 chrX 36950685 36950759 -140023381 - Harlequin LTR ERV1 -1322 5574 5501 2019 135 7 0 chrX 36950770 36951073 -140023067 - LTR42 LTR ERVL -190 305 1 324 184 40 13 chrX 36951074 36951150 -140022990 - L1M4 LINE L1 -4859 1996 1919 2316 111 3 0 chrX 36951158 36951456 -140022684 + AluSq SINE Alu 8 306 -7 2341 102 3 13 chrX 36951456 36951770 -140022370 + AluSx SINE Alu 1 311 -1 1200 144 0 0 chrX 36951779 36951959 -140022181 + AluSg/x SINE Alu 121 300 -10 1764 159 23 23 chrX 36951971 36952272 -140021868 + AluJo SINE Alu 1 301 -11 263 210 0 16 chrX 36952277 36952339 -140021801 - L1M4 LINE L1 -5034 1925 1865 1385 115 206 0 chrX 36952343 36952595 -140021545 + MER83B LTR ERV1 6 309 -69 2011 101 94 11 chrX 36952595 36952882 -140021258 - AluSp SINE Alu 0 313 3 31 0 0 0 chrX 36952884 36952915 -140021225 + AT_rich Low_complexity Low_complexity 1 31 0 669 89 0 0 chrX 36952915 36953005 -140021135 - AluS SINE Alu -221 92 3 2187 120 0 22 chrX 36953007 36953324 -140020816 - AluSx SINE Alu -2 310 1 2481 74 0 16 chrX 36953332 36953641 -140020499 - AluY SINE Alu -1 310 7 546 141 0 0 chrX 36953647 36953732 -140020408 + MER83B LTR ERV1 294 378 0 432 0 0 0 chrX 36953752 36953800 -140020340 + (TATG)n Simple_repeat Simple_repeat 1 48 0 786 233 6 84 chrX 36953827 36954093 -140020047 - L1M4 LINE L1 -4990 1865 1630 2472 64 0 10 chrX 36954093 36954390 -140019750 - AluY SINE Alu -16 295 2 786 233 6 84 chrX 36954390 36954466 -140019674 - L1M4 LINE L1 -5225 1630 1550 2316 103 0 31 chrX 36954479 36954513 -140019627 - AluSx SINE Alu -2 310 276 261 0 0 0 chrX 36954513 36954542 -140019598 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2316 103 0 31 chrX 36954542 36954827 -140019313 - AluSx SINE Alu -36 276 1 2208 108 7 10 chrX 36954829 36955134 -140019006 - AluSq SINE Alu -9 304 1 629 213 47 7 chrX 36955135 36955285 -140018855 - L1M4 LINE L1 -6693 166 11 302 322 81 35 chrX 36955292 36955466 -140018674 - L1ME3A LINE L1 0 6170 5989 1660 167 80 53 chrX 36955608 36955787 -140018353 + MSTB1 LTR MaLR 3 176 -252 2400 82 0 3 chrX 36955787 36956080 -140018060 + AluSc SINE Alu 1 292 -17 721 82 18 0 chrX 36956085 36956195 -140017945 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 1660 167 80 53 chrX 36956195 36956416 -140017724 + MSTB1 LTR MaLR 179 418 -10 743 165 0 8 chrX 36956434 36956561 -140017579 + FLAM_C SINE Alu 2 127 -6 21 0 0 0 chrX 36956562 36956583 -140017557 + AT_rich Low_complexity Low_complexity 1 21 0 1033 204 108 9 chrX 36956599 36956830 -140017310 + AluJo SINE Alu 56 309 -3 2348 110 3 0 chrX 36956836 36957146 -140016994 + AluSp SINE Alu 1 311 -2 2042 134 3 10 chrX 36957149 36957462 -140016678 + AluSx SINE Alu 1 311 -1 2353 81 0 3 chrX 36957472 36957804 -140016336 + AluSx SINE Alu 2 332 0 1137 154 23 64 chrX 36957867 36958087 -140016053 - AluJo SINE Alu -67 245 35 2390 101 7 0 chrX 36958093 36958400 -140015740 - AluSq SINE Alu -4 309 1 2405 82 0 25 chrX 36958411 36958440 -140015700 - AluSq SINE Alu -3 310 282 372 22 0 0 chrX 36958440 36958485 -140015655 + (TG)n Simple_repeat Simple_repeat 1 45 0 2405 82 0 25 chrX 36958485 36958773 -140015367 - AluSq SINE Alu -31 282 1 331 328 41 32 chrX 36958773 36958923 -140015217 - L1M4 LINE L1 -780 5366 5219 1472 122 0 28 chrX 36958923 36959081 -140015059 - AluJb SINE Alu -23 289 128 209 30 61 0 chrX 36959081 36959114 -140015026 + T-rich Low_complexity Low_complexity 2 36 0 2290 100 0 0 chrX 36959114 36959395 -140014745 - AluSg SINE Alu -29 281 1 1472 122 0 28 chrX 36959395 36959449 -140014691 - AluJb SINE Alu -182 130 82 331 328 41 32 chrX 36959449 36959490 -140014650 - L1M4 LINE L1 -927 5219 5158 637 214 0 0 chrX 36959973 36960099 -140014041 - FLAM_A SINE Alu -7 135 10 2259 92 7 0 chrX 36960140 36960423 -140013717 + AluSx SINE Alu 9 293 -19 975 255 0 4 chrX 36960683 36960918 -140013222 + L1MD3 LINE L1 7426 7659 -336 2273 115 7 0 chrX 36960924 36961219 -140012921 + AluSx SINE Alu 1 297 -15 1549 78 11 0 chrX 36961219 36961410 -140012730 + AluSg SINE Alu 1 193 -117 2498 79 0 0 chrX 36961411 36961714 -140012426 - AluY SINE Alu -8 303 1 871 108 0 16 chrX 36961715 36961844 -140012296 + AluSg SINE Alu 183 309 -1 2218 96 0 10 chrX 36961864 36962157 -140011983 + AluY SINE Alu 1 290 -21 554 133 0 0 chrX 36962171 36962254 -140011886 - AluSg/x SINE Alu -17 295 213 818 172 0 0 chrX 36962254 36962382 -140011758 - FRAM SINE Alu -44 132 5 2053 153 3 0 chrX 36962598 36962932 -140011208 - AluSx SINE Alu 0 312 1 2014 140 0 0 chrX 36962962 36963241 -140010899 + AluSx SINE Alu 9 287 -25 278 67 22 0 chrX 36963241 36963286 -140010854 + (TA)n Simple_repeat Simple_repeat 2 47 0 914 180 6 17 chrX 36963529 36963707 -140010433 - FRAM SINE Alu 0 176 1 2215 129 0 16 chrX 36963738 36964055 -140010085 - AluSx SINE Alu 0 312 1 1592 177 0 4 chrX 36964217 36964482 -140009658 - AluJb SINE Alu -47 265 2 2429 109 0 0 chrX 36964557 36964869 -140009271 - AluSx SINE Alu 0 312 1 2300 88 17 0 chrX 36964948 36965242 -140008898 - AluSx SINE Alu 0 312 14 2393 101 3 0 chrX 36965258 36965564 -140008576 - AluSx SINE Alu -1 311 5 233 75 25 0 chrX 36965566 36965606 -140008534 - Alu SINE Alu -166 137 97 1070 155 0 6 chrX 36965676 36965844 -140008296 - FRAM SINE Alu -17 159 1 207 189 0 0 chrX 36965884 36965921 -140008219 + L2 LINE L2 3270 3306 -7 2457 84 0 3 chrX 36966000 36966310 -140007830 + AluSc SINE Alu 1 309 0 186 244 85 0 chrX 36967143 36967225 -140006915 - L2 LINE L2 -1017 2297 2209 1333 200 99 9 chrX 36968039 36968411 -140005729 - L2 LINE L2 -332 2981 2574 2280 122 0 3 chrX 36968783 36969095 -140005045 - AluSx SINE Alu -1 311 1 788 239 26 77 chrX 36969170 36969276 -140004864 + L2 LINE L2 2358 2468 -846 2339 103 0 0 chrX 36969276 36969578 -140004562 + AluSx SINE Alu 1 302 -10 788 239 26 77 chrX 36969578 36969781 -140004359 + L2 LINE L2 2468 2651 -663 996 268 156 22 chrX 36969786 36970259 -140003881 + L2 LINE L2 2777 3312 -1 430 213 32 0 chrX 36970739 36970833 -140003307 + MIR SINE MIR 108 204 -58 838 153 16 0 chrX 36970833 36970957 -140003183 + FLAM_C SINE Alu 1 126 -17 2471 77 6 19 chrX 36970983 36971296 -140002844 + AluY SINE Alu 1 309 -2 709 244 85 29 chrX 36971372 36971472 -140002668 + MER46C DNA MER2_type 1 94 -244 2347 123 0 0 chrX 36971472 36971782 -140002358 - AluSx SINE Alu -2 310 1 709 244 85 29 chrX 36971782 36971927 -140002213 + MER46C DNA MER2_type 94 260 -78 314 138 0 17 chrX 36971927 36971985 -140002155 - MER116 DNA Mariner 0 80 24 2218 109 0 0 chrX 36972018 36972326 -140001814 + AluSq SINE Alu 1 308 0 2319 111 7 0 chrX 36974703 36975009 -139999131 - AluSg SINE Alu -2 308 1 239 103 26 0 chrX 36975010 36975049 -139999091 - L1MD3 LINE L1 -1059 6936 6897 1764 169 0 24 chrX 36975049 36975216 -139998924 - AluJo SINE Alu -29 283 124 2312 106 3 0 chrX 36975216 36975517 -139998623 + AluSq SINE Alu 1 302 -11 1764 169 0 24 chrX 36975517 36975639 -139998501 - AluJo SINE Alu -188 124 1 2027 135 0 30 chrX 36976427 36976731 -139997409 + AluSx SINE Alu 5 299 -13 813 150 0 46 chrX 36976854 36977007 -139997133 - AluJo SINE Alu -19 283 138 21 0 0 0 chrX 36977988 36978009 -139996131 + AT_rich Low_complexity Low_complexity 1 21 0 889 143 7 36 chrX 36978009 36978149 -139995991 - AluJo SINE Alu -176 136 1 2516 91 0 0 chrX 36978156 36978464 -139995676 - AluSg SINE Alu -2 308 1 319 301 0 0 chrX 36978640 36978723 -139995417 - L2 LINE L2 -4 3309 3227 1145 262 97 4 chrX 36978728 36979209 -139994931 - L2 LINE L2 -22 3291 2752 1211 123 32 21 chrX 36979398 36979585 -139994555 - AluJb SINE Alu -9 303 115 2389 103 0 0 chrX 36979585 36979885 -139994255 + AluSx SINE Alu 1 300 -12 745 166 58 0 chrX 36979894 36980033 -139994107 + MLT1A1 LTR MaLR 55 201 -164 2707 53 0 0 chrX 36980104 36980407 -139993733 + AluY SINE Alu 1 303 -8 1263 183 101 8 chrX 36980414 36980671 -139993469 - MSTD LTR MaLR -2 394 114 646 173 60 0 chrX 36980696 36980829 -139993311 - MLT1B LTR MaLR -46 344 204 234 0 0 0 chrX 36980838 36980864 -139993276 + (TC)n Simple_repeat Simple_repeat 2 27 0 248 208 0 0 chrX 36980874 36980922 -139993218 - MSTD LTR MaLR -334 94 47 2096 125 0 0 chrX 36980924 36981203 -139992937 - AluSx SINE Alu -7 305 27 1818 178 26 0 chrX 36981284 36981587 -139992553 - AluJo SINE Alu -1 311 1 2334 93 23 0 chrX 36981592 36981894 -139992246 - AluSx SINE Alu -3 309 1 663 234 31 92 chrX 36981905 36981969 -139992171 - MIR SINE MIR -10 252 186 2040 96 0 86 chrX 36981969 36982313 -139991827 - AluSx SINE Alu 0 317 1 663 234 31 92 chrX 36982313 36982507 -139991633 - MIR SINE MIR -76 186 8 431 313 89 16 chrX 36982562 36982808 -139991332 - L1ME3 LINE L1 -335 5827 5564 724 243 26 31 chrX 36983299 36983499 -139990641 - MIR SINE MIR 0 262 61 1608 193 7 26 chrX 36983558 36983864 -139990276 - AluJo SINE Alu -12 300 1 24 0 0 0 chrX 36984013 36984037 -139990103 + AT_rich Low_complexity Low_complexity 1 24 0 1556 176 0 24 chrX 36984037 36984292 -139989848 - AluJb SINE Alu -33 279 31 192 111 0 0 chrX 36984432 36984468 -139989672 + (TATG)n Simple_repeat Simple_repeat 2 37 0 1977 144 7 3 chrX 36984468 36984752 -139989388 - AluSx SINE Alu -27 285 1 1270 124 0 6 chrX 36984752 36984929 -139989211 - AluSg/x SINE Alu -3 306 131 1883 154 20 10 chrX 36984930 36985229 -139988911 - AluSx SINE Alu -10 302 1 2435 74 0 0 chrX 36985236 36985566 -139988574 - AluSx SINE Alu 0 330 1 1872 182 0 10 chrX 36985843 36986150 -139987990 - AluJo SINE Alu -8 304 1 271 161 74 37 chrX 36986455 36986501 -139987639 - MER20B DNA MER1_type -6 777 725 2569 66 3 0 chrX 36986501 36986802 -139987338 + AluSp SINE Alu 1 302 -11 271 161 74 37 chrX 36986802 36986836 -139987304 - MER20B DNA MER1_type -58 725 694 235 347 71 0 chrX 36986951 36987049 -139987091 + L2 LINE L2 3166 3270 -2 326 317 150 6 chrX 36987297 36987464 -139986676 + MIR SINE MIR 15 205 -57 2680 42 0 6 chrX 36989119 36989430 -139984710 + AluY SINE Alu 1 309 -2 2678 61 0 0 chrX 36989844 36990155 -139983985 - AluY SINE Alu 0 311 1 2292 99 3 0 chrX 36990320 36990613 -139983527 - AluSx SINE Alu -18 294 1 1620 193 7 0 chrX 36990848 36991128 -139983012 - AluJo SINE Alu -30 282 1 2118 136 0 3 chrX 36991137 36991439 -139982701 - AluSx SINE Alu -10 302 2 1323 172 31 4 chrX 36991466 36991693 -139982447 + AluJo SINE Alu 64 296 -16 2332 113 0 3 chrX 36991695 36992005 -139982135 + AluSq SINE Alu 1 309 -4 2327 96 3 3 chrX 36992025 36992327 -139981813 + AluSx SINE Alu 1 302 -10 239 174 0 0 chrX 36992349 36992395 -139981745 + Alu SINE Alu 254 299 -4 2143 102 49 0 chrX 36992616 36992900 -139981240 + AluSc SINE Alu 1 298 -11 938 199 6 0 chrX 36992911 36993072 -139981068 + AluJb SINE Alu 137 298 -14 1769 179 13 3 chrX 36993123 36993425 -139980715 + AluJo SINE Alu 1 305 -7 315 206 0 59 chrX 36993569 36993585 -139980555 + AluSc SINE Alu 118 133 -166 2185 100 10 26 chrX 36993585 36993895 -139980245 + AluSg SINE Alu 1 305 -5 2519 65 0 0 chrX 36993895 36994188 -139979952 + AluY SINE Alu 1 293 -18 315 206 0 59 chrX 36994188 36994238 -139979902 + AluSc SINE Alu 131 181 -118 1104 189 32 0 chrX 36994240 36994425 -139979715 - AluJo SINE Alu -121 191 1 1472 96 5 0 chrX 36994567 36994754 -139979386 + AluSp SINE Alu 1 188 -125 563 143 0 0 chrX 36994754 36994845 -139979295 - AluS SINE Alu -220 92 2 326 291 90 8 chrX 36994886 36995020 -139979120 - L2 LINE L2 0 3313 3169 287 45 68 0 chrX 36995132 36995176 -139978964 + AluJb SINE Alu 87 133 -169 2106 137 7 0 chrX 36995176 36995468 -139978672 - AluSx SINE Alu -18 294 1 1669 108 0 0 chrX 36995593 36995805 -139978335 + AluSg/x SINE Alu 81 292 -20 1829 153 10 35 chrX 36995814 36996128 -139978012 + AluJo SINE Alu 1 306 -6 996 200 238 0 chrX 36996128 36996363 -139977777 + AluSp SINE Alu 1 291 -12 1931 78 108 0 chrX 36996446 36996715 -139977425 + AluSg SINE Alu 1 298 -12 1540 253 78 5 chrX 36996775 36997213 -139976927 + MER119 DNA MER1_type 3 472 -111 554 174 60 40 chrX 36997294 36997443 -139976697 - L1ME1 LINE L1 -70 6096 5945 2265 64 34 0 chrX 36997511 36997807 -139976333 - AluY SINE Alu -4 307 2 2866 9 0 0 chrX 36997871 36998189 -139975951 - AluYb8 SINE Alu 0 318 1 2251 104 0 0 chrX 36998191 36998488 -139975652 - AluSx SINE Alu -5 307 11 2093 71 46 11 chrX 36998534 36998817 -139975323 + AluY SINE Alu 1 293 -18 2029 119 7 7 chrX 36998828 36999113 -139975027 + AluSq SINE Alu 10 294 -19 1316 172 18 85 chrX 36999162 36999294 -139974846 - L1MB2 LINE L1 0 6171 6032 1934 117 14 3 chrX 36999294 36999584 -139974556 + AluSx SINE Alu 1 293 -19 1316 172 18 85 chrX 36999584 36999840 -139974300 - L1MB2 LINE L1 -139 6032 5814 1188 191 38 0 chrX 36999841 37000051 -139974089 - AluSg/x SINE Alu 0 312 95 * 1395 138 0 0 chrX 37000050 37000253 -139973887 + AluSg/x SINE Alu 86 288 -22 681 161 55 81 chrX 37000253 37000356 -139973784 - L1M4 LINE L1 -5370 1172 1068 2219 112 0 0 chrX 37000356 37000652 -139973488 - AluSx SINE Alu -16 296 1 681 161 55 81 chrX 37000652 37000784 -139973356 - L1M4 LINE L1 -5474 1068 943 676 194 15 8 chrX 37000784 37000918 -139973222 - FRAM SINE Alu -4 172 38 1985 229 21 19 chrX 37000939 37001220 -139972920 - L1M4 LINE L1 -5589 953 669 2166 120 0 9 chrX 37001220 37001536 -139972604 - AluSq SINE Alu 0 313 1 1985 229 21 19 chrX 37001536 37001738 -139972402 - L1M4 LINE L1 -5873 669 469 785 167 0 129 chrX 37001738 37001924 -139972216 - AluJb SINE Alu -12 300 139 529 257 82 6 chrX 37001924 37002107 -139972033 + L2 LINE L2 1993 2189 -1125 1069 173 11 0 chrX 37002107 37002284 -139971856 - AluSg/x SINE Alu 0 312 131 2126 107 3 3 chrX 37002284 37002582 -139971558 - AluSq SINE Alu -15 298 1 1069 173 11 0 chrX 37002582 37002595 -139971545 - AluSg/x SINE Alu -181 131 120 189 94 0 0 chrX 37002595 37002627 -139971513 + (A)n Simple_repeat Simple_repeat 1 32 0 437 113 0 0 chrX 37002672 37002734 -139971406 + AluJ/FLAM SINE Alu 1 62 -250 583 171 7 59 chrX 37002748 37002767 -139971373 + LTR23 LTR ERV1 3 21 -416 2080 137 3 0 chrX 37002767 37003073 -139971067 + AluSx SINE Alu 3 309 -3 583 171 7 59 chrX 37003073 37003205 -139970935 + LTR23 LTR ERV1 21 146 -291 2287 87 0 0 chrX 37003205 37003494 -139970646 + AluSq SINE Alu 1 289 -24 249 122 0 0 chrX 37003494 37003535 -139970605 + MER41B LTR ERV1 595 635 0 1779 162 0 13 chrX 37003779 37004088 -139970052 - AluJb SINE Alu -7 305 1 400 202 0 0 chrX 37004088 37004187 -139969953 - L1MEc LINE L1 -5557 839 741 2070 235 51 43 chrX 37004200 37004746 -139969394 - L1MEc LINE L1 -5702 694 141 2075 108 10 10 chrX 37004746 37005043 -139969097 + AluSx SINE Alu 1 297 -15 2070 235 51 43 chrX 37005043 37005142 -139968998 - L1MEc LINE L1 -6255 141 44 758 132 66 8 chrX 37005153 37005274 -139968866 - FLAM_C SINE Alu -15 128 1 394 369 172 10 chrX 37005290 37005628 -139968512 - L2 LINE L2 -896 2418 2136 2285 105 0 13 chrX 37005628 37005762 -139968378 + AluSg SINE Alu 1 135 -175 2510 50 0 0 chrX 37005762 37006059 -139968081 + AluSg SINE Alu 1 297 -13 2285 105 0 13 chrX 37006059 37006237 -139967903 + AluSg SINE Alu 135 309 -1 394 369 172 10 chrX 37006237 37006502 -139967638 - L2 LINE L2 -1178 2136 1717 977 108 29 0 chrX 37006767 37006906 -139967234 - U4 snRNA snRNA -1 144 2 1021 122 10 61 chrX 37006909 37006929 -139967211 - AluSg/x SINE Alu -9 303 284 2027 112 13 7 chrX 37006929 37007234 -139966906 - AluSq SINE Alu -6 307 1 1021 122 10 61 chrX 37007234 37007390 -139966750 - AluSg/x SINE Alu -28 284 135 2298 84 0 3 chrX 37007390 37007687 -139966453 - AluSg SINE Alu -14 296 1 1021 122 10 61 chrX 37007687 37007705 -139966435 - AluSg/x SINE Alu -177 135 118 2210 73 3 38 chrX 37007730 37008046 -139966094 + AluSp SINE Alu 1 305 -8 2342 90 0 0 chrX 37008191 37008503 -139965637 + AluSx SINE Alu 1 312 0 2179 122 0 0 chrX 37010390 37010694 -139963446 - AluSx SINE Alu -8 304 1 188 239 0 0 chrX 37011463 37011509 -139962631 - L2 LINE L2 -5 3308 3263 949 186 0 6 chrX 37011510 37011682 -139962458 - MIR SINE MIR -20 242 72 403 318 9 14 chrX 37011861 37012018 -139962122 + MIR3 SINE MIR 17 171 -49 240 312 54 11 chrX 37014386 37014479 -139959661 - L2 LINE L2 -182 3090 2994 1637 173 18 3 chrX 37017934 37018217 -139955923 + AluJo SINE Alu 1 287 -25 1539 160 26 67 chrX 37018217 37018336 -139955804 + AluJb SINE Alu 2 124 -188 2210 73 13 17 chrX 37018336 37018638 -139955502 - AluSg SINE Alu -9 301 1 1539 160 26 67 chrX 37018638 37018831 -139955309 + AluJb SINE Alu 124 301 -11 2121 88 35 0 chrX 37019276 37019559 -139954581 + AluSg SINE Alu 1 293 -17 201 292 0 15 chrX 37020539 37020604 -139953536 + GA-rich Low_complexity Low_complexity 5 68 0 200 196 109 0 chrX 37022360 37022406 -139951734 + L2 LINE L2 3187 3237 -76 953 228 91 9 chrX 37022440 37022672 -139951468 + MIR SINE MIR 2 252 -10 213 143 0 0 chrX 37022710 37022745 -139951395 - MIR SINE MIR -108 154 120 2327 81 0 19 chrX 37022811 37023121 -139951019 - AluSq SINE Alu -9 304 1 419 281 127 20 chrX 37025418 37025671 -139948469 - MER46C DNA MER2_type -36 302 23 2109 77 46 11 chrX 37025696 37025845 -139948295 - AluSp SINE Alu -18 295 153 2521 56 0 0 chrX 37025845 37026149 -139947991 - AluY SINE Alu -7 304 1 2109 77 46 11 chrX 37026149 37026284 -139947856 - AluSp SINE Alu -160 153 1 380 243 99 0 chrX 37027186 37027297 -139946843 - MIR SINE MIR -57 205 84 194 314 179 0 chrX 37027298 37027438 -139946702 + L2 LINE L2 2807 2971 -343 300 330 26 9 chrX 37027553 37027668 -139946472 + L2 LINE L2 3197 3313 0 2191 115 3 10 chrX 37028606 37028919 -139945221 - AluSx SINE Alu -1 311 1 849 203 0 25 chrX 37030239 37030402 -139943738 + AluJo SINE Alu 1 159 -153 300 227 0 80 chrX 37030877 37030952 -139943188 - MIR SINE MIR -55 153 85 333 68 0 0 chrX 37031177 37031221 -139942919 + (CCA)n Simple_repeat Simple_repeat 2 45 0 183 225 0 0 chrX 37031669 37031709 -139942431 + MIR SINE MIR 110 145 -63 952 152 88 34 chrX 37032024 37032228 -139941912 + MIR SINE MIR 46 260 -2 2468 69 0 0 chrX 37032412 37032717 -139941423 - AluSg1 SINE Alu -4 305 1 21 0 0 0 chrX 37035386 37035407 -139938733 + GC_rich Low_complexity Low_complexity 1 21 0 2132 115 0 3 chrX 37036632 37036927 -139937213 + AluSx SINE Alu 1 294 -18 2389 91 0 0 chrX 37037002 37037309 -139936831 + AluSx SINE Alu 6 312 0 1029 204 84 14 chrX 37037317 37037601 -139936539 - L1MB8 LINE L1 -81 6097 5794 2364 84 3 0 chrX 37038064 37038375 -139935765 - AluSp SINE Alu -1 312 1 570 186 0 172 chrX 37038729 37038795 -139935345 - MLT1D LTR MaLR 0 505 429 2315 91 3 0 chrX 37038795 37039102 -139935038 + AluSc SINE Alu 1 308 -1 570 186 0 172 chrX 37039102 37039134 -139935006 - MLT1D LTR MaLR -76 429 393 1657 123 37 60 chrX 37039134 37039399 -139934741 + AluSx SINE Alu 12 271 -41 198 0 0 0 chrX 37039399 37039421 -139934719 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1657 123 37 60 chrX 37039421 37039455 -139934685 + AluSx SINE Alu 271 304 -8 570 186 0 172 chrX 37039455 37039556 -139934584 - MLT1D LTR MaLR -112 393 340 1447 124 76 55 chrX 37039556 37039846 -139934294 + MER1B DNA MER1_type 1 296 -43 2069 114 0 0 chrX 37039848 37040157 -139933983 + AluSx SINE Alu 1 309 0 739 192 21 65 chrX 37040180 37040412 -139933728 - MLT1D LTR MaLR -198 269 47 1143 147 0 0 chrX 37040412 37040582 -139933558 + AluJb SINE Alu 132 301 -11 1895 142 14 0 chrX 37040591 37040880 -139933260 + AluSx SINE Alu 1 293 -19 2220 93 0 13 chrX 37040887 37041198 -139932942 + AluY SINE Alu 1 307 -4 648 118 0 0 chrX 37041660 37041753 -139932387 + AluSg/x SINE Alu 215 307 -3 2192 112 3 10 chrX 37041822 37042136 -139932004 + AluSx SINE Alu 1 312 0 2417 65 7 3 chrX 37042150 37042457 -139931683 + AluY SINE Alu 3 310 -1 1649 162 3 65 chrX 37042672 37042852 -139931288 - AluJo SINE Alu -11 301 148 2394 77 0 16 chrX 37042852 37043165 -139930975 - AluSc SINE Alu -1 308 1 1649 162 3 65 chrX 37043165 37043305 -139930835 - AluJo SINE Alu -164 148 1 2277 89 0 7 chrX 37043345 37043647 -139930493 - AluSx SINE Alu -12 300 1 2071 87 7 20 chrX 37043648 37043948 -139930192 - AluSx SINE Alu -16 296 1 2397 68 3 3 chrX 37044038 37044346 -139929794 - AluSx SINE Alu -4 308 1 224 271 34 0 chrX 37044623 37044682 -139929458 + L2 LINE L2 3212 3272 0 465 283 44 13 chrX 37044687 37044846 -139929294 - MIR SINE MIR -6 256 93 185 128 0 26 chrX 37045574 37045613 -139928527 + (GGA)n Simple_repeat Simple_repeat 1 38 0 2449 85 0 0 chrX 37047835 37048129 -139926011 + AluSc SINE Alu 1 294 -15 2430 97 0 0 chrX 37051350 37051649 -139922491 - AluSg SINE Alu -11 299 1 2132 128 23 10 chrX 37051740 37052046 -139922094 - AluSx SINE Alu -2 310 1 2183 131 3 0 chrX 37052239 37052545 -139921595 - AluSg SINE Alu -3 307 1 2392 88 3 19 chrX 37052565 37052883 -139921257 - AluSq SINE Alu 0 313 1 2027 146 3 3 chrX 37052885 37053180 -139920960 - AluJb SINE Alu -17 295 1 2636 52 0 3 chrX 37053362 37053667 -139920473 + AluY SINE Alu 1 304 -7 2230 101 0 42 chrX 37053705 37054049 -139920091 - AluSx SINE Alu 0 312 1 461 125 0 0 chrX 37055870 37055942 -139918198 - AluS SINE Alu -6 304 233 1371 117 0 29 chrX 37055976 37056113 -139918027 + AluSx SINE Alu 1 132 -180 2110 110 31 7 chrX 37056113 37056405 -139917735 + AluSg SINE Alu 1 299 -11 1371 117 0 29 chrX 37056405 37056472 -139917668 + AluSx SINE Alu 132 199 -113 492 103 0 0 chrX 37056473 37056541 -139917599 + AluSc SINE Alu 66 133 -176 2121 113 0 47 chrX 37056541 37056859 -139917281 + AluSx SINE Alu 1 303 -9 964 314 60 22 chrX 37056863 37057316 -139916824 - L2 LINE L2 -18 3295 2826 206 182 0 23 chrX 37057811 37057855 -139916285 + (TAA)n Simple_repeat Simple_repeat 3 45 0 606 266 21 84 chrX 37057859 37057970 -139916170 - MIR SINE MIR 0 262 171 2362 65 25 0 chrX 37057970 37058275 -139915865 - AluSp SINE Alu 0 312 1 606 266 21 84 chrX 37058275 37058399 -139915741 - MIR SINE MIR -91 171 41 439 309 50 53 chrX 37058676 37058819 -139915321 + L1M4 LINE L1 4189 4331 -1815 2152 123 7 0 chrX 37058819 37059121 -139915019 + AluSg1 SINE Alu 3 306 -3 439 309 50 53 chrX 37059121 37059278 -139914862 + L1M4 LINE L1 4331 4488 -1658 1359 163 0 46 chrX 37059987 37060226 -139913914 + AluJo SINE Alu 85 312 0 12681 110 8 53 chrX 37060236 37063057 -139911083 + L1P3 LINE L1 7 2810 -3651 1059 96 0 7 chrX 37063058 37063193 -139910947 + AluY SINE Alu 1 134 -177 2455 62 0 3 chrX 37063193 37063535 -139910605 + AluY SINE Alu 1 311 0 8261 95 2 0 chrX 37063535 37064755 -139909385 + L1P3 LINE L1 2802 4024 -2437 904 131 6 25 chrX 37064785 37064945 -139909195 + L1MC1 LINE L1 6177 6333 0 1709 211 60 76 chrX 37064962 37065271 -139908869 + L1M4 LINE L1 3520 3832 -2314 1888 150 18 0 chrX 37065271 37065585 -139908555 + AluSx SINE Alu 1 319 0 1709 211 60 76 chrX 37065585 37065789 -139908351 + L1M4 LINE L1 3832 4025 -2121 2437 70 3 3 chrX 37065789 37066087 -139908053 - AluY SINE Alu -13 298 1 1709 211 60 76 chrX 37066087 37066191 -139907949 + L1M4 LINE L1 4025 4129 -2017 1611 135 8 8 chrX 37066195 37066432 -139907708 + AluJb SINE Alu 1 237 -75 473 270 73 21 chrX 37066435 37066648 -139907492 + L1ME1 LINE L1 5937 6139 -27 1969 149 7 0 chrX 37066693 37067001 -139907139 - AluJb SINE Alu -2 310 1 756 229 108 8 chrX 37067055 37067295 -139906845 - L1ME3A LINE L1 -218 5952 5689 183 156 0 0 chrX 37068412 37068444 -139905696 + GA-rich Low_complexity Low_complexity 3 34 0 2204 114 7 0 chrX 37069087 37069377 -139904763 + AluSx SINE Alu 1 292 -20 435 19 0 0 chrX 37069378 37069430 -139904710 + (GA)n Simple_repeat Simple_repeat 1 52 0 1965 146 14 0 chrX 37069436 37069716 -139904424 + AluJb SINE Alu 1 284 -28 381 296 56 0 chrX 37069827 37069989 -139904151 - MIR SINE MIR 0 262 92 190 176 0 0 chrX 37069977 37070011 -139904129 + MIR SINE MIR 69 102 -160 * 232 278 28 0 chrX 37070151 37070223 -139903917 - MIR SINE MIR -112 150 77 2308 101 0 3 chrX 37070634 37070932 -139903208 - AluSx SINE Alu -15 297 1 539 185 129 138 chrX 37070952 37071292 -139902848 - L1ME3A LINE L1 -66 6104 5768 669 306 127 35 chrX 37071423 37071568 -139902572 - L1ME3A LINE L1 -946 5200 5070 1994 113 55 10 chrX 37071568 37071860 -139902280 - AluSg SINE Alu -5 305 1 669 306 127 35 chrX 37071860 37072311 -139901829 - L1ME3A LINE L1 -1076 5070 4549 1015 254 74 7 chrX 37072316 37072615 -139901525 - L2 LINE L2 -1247 2067 1749 24 0 0 0 chrX 37073247 37073271 -139900869 + AT_rich Low_complexity Low_complexity 1 24 0 191 171 24 0 chrX 37075160 37075201 -139898939 + L2 LINE L2 2501 2542 -772 1009 75 46 52 chrX 37075201 37075224 -139898916 + L1MA2 LINE L1 6132 6154 -150 2069 118 42 0 chrX 37075224 37075512 -139898628 + AluSx SINE Alu 1 300 -12 1009 75 46 52 chrX 37075512 37075662 -139898478 + L1MA2 LINE L1 6154 6304 0 28 0 0 0 chrX 37075662 37075690 -139898450 + AT_rich Low_complexity Low_complexity 1 28 0 767 210 0 7 chrX 37075764 37075907 -139898233 + L1MC4 LINE L1 6701 6842 -1200 2385 99 3 6 chrX 37075908 37076297 -139897843 + AluSx SINE Alu 1 388 0 300 261 120 0 chrX 37076302 37076394 -139897746 + L1M4 LINE L1 3073 3175 -2971 1221 186 40 108 chrX 37076397 37076842 -139897298 + L1MC5 LINE L1 6749 7163 -798 213 98 0 82 chrX 37076900 37076961 -139897179 + (TTAA)n Simple_repeat Simple_repeat 1 56 0 710 228 172 12 chrX 37076988 37077238 -139896902 + L1MC5 LINE L1 7397 7686 -275 393 113 0 0 chrX 37077260 37077313 -139896827 + Alu SINE Alu 1 53 -247 859 116 322 0 chrX 37077318 37077464 -139896676 + AluSg/x SINE Alu 105 297 -12 664 197 64 32 chrX 37077465 37077683 -139896457 + L1MC5 LINE L1 7701 7925 -36 261 0 0 0 chrX 37077686 37077715 -139896425 + (CA)n Simple_repeat Simple_repeat 1 29 0 1156 272 81 17 chrX 37077715 37078226 -139895914 + L2 LINE L2 2563 3133 -180 441 0 0 0 chrX 37078226 37078275 -139895865 + (CA)n Simple_repeat Simple_repeat 2 50 0 1156 272 81 17 chrX 37078275 37078469 -139895671 + L2 LINE L2 3133 3313 0 1897 159 7 0 chrX 37078881 37079171 -139894969 - AluJb SINE Alu -20 292 1 442 227 85 11 chrX 37079457 37079633 -139894507 - L1ME4a LINE L1 -8 6113 5925 245 298 193 0 chrX 37079662 37079843 -139894297 - L1ME4a LINE L1 -276 5845 5630 2202 125 0 3 chrX 37079872 37080169 -139893971 + AluSq SINE Alu 1 296 -17 2213 103 0 0 chrX 37080170 37080443 -139893697 + AluSx SINE Alu 1 273 -39 261 0 0 0 chrX 37080455 37080484 -139893656 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2286 103 3 0 chrX 37081025 37081317 -139892823 - AluSx SINE Alu -19 293 1 754 157 0 22 chrX 37081475 37081609 -139892531 - FLAM_C SINE Alu 0 133 3 377 137 107 176 chrX 37081612 37081743 -139892397 - MIR SINE MIR -59 203 82 739 195 32 85 chrX 37084034 37084280 -139889860 + MER112 DNA MER1_type 17 249 -11 753 165 30 43 chrX 37084280 37084444 -139889696 + MIR SINE MIR 59 220 -42 226 286 59 34 chrX 37084401 37084520 -139889620 - MIR3 SINE MIR -10 198 77 * 301 312 9 18 chrX 37084533 37084642 -139889498 + MIR SINE MIR 2 109 -153 686 211 29 39 chrX 37084945 37085149 -139888991 - L2 LINE L2 0 3313 3112 321 199 96 37 chrX 37085349 37085485 -139888655 - L2 LINE L2 -1202 2112 1969 301 324 51 33 chrX 37086152 37086457 -139887683 - L2 LINE L2 -262 3051 2739 312 326 81 29 chrX 37086485 37086657 -139887483 + MIR SINE MIR 63 243 -19 292 185 19 0 chrX 37086746 37086800 -139887340 + L2 LINE L2 3255 3309 -4 536 243 50 7 chrX 37087497 37087668 -139886472 + L1ME3 LINE L1 5986 6158 -4 24 32 0 0 chrX 37087772 37087803 -139886337 + AT_rich Low_complexity Low_complexity 1 31 0 403 252 10 10 chrX 37087820 37087923 -139886217 + MIR SINE MIR 60 162 -100 669 266 145 5 chrX 37088192 37088406 -139885734 - MIR SINE MIR -1 261 18 520 296 99 0 chrX 37089191 37089424 -139884716 + L2 LINE L2 2862 3117 -196 226 279 119 35 chrX 37089437 37089638 -139884502 + L2 LINE L2 3028 3245 -68 248 194 16 32 chrX 37090559 37090655 -139883485 + (CCG)n Simple_repeat Simple_repeat 1 94 0 195 139 0 0 chrX 37090851 37090887 -139883253 + (CGG)n Simple_repeat Simple_repeat 1 36 0 277 202 155 12 chrX 37092455 37092539 -139881601 - MIR SINE MIR -10 252 157 473 202 0 65 chrX 37092587 37092711 -139881429 - MLT1J LTR MaLR -3 508 393 1339 270 57 8 chrX 37092775 37093326 -139880814 + L2 LINE L2 2503 3088 -225 201 121 0 0 chrX 37094190 37094223 -139879917 + (T)n Simple_repeat Simple_repeat 1 33 0 499 299 21 46 chrX 37094766 37094960 -139879180 + MIR SINE MIR 71 259 -3 273 278 5 43 chrX 37096402 37096589 -139877551 + CT-rich Low_complexity Low_complexity 1 180 0 181 318 0 0 chrX 37096673 37096717 -139877423 + L2 LINE L2 3208 3251 -21 277 211 0 0 chrX 37097004 37097056 -139877084 + MIR SINE MIR 209 260 -2 * 417 320 106 11 chrX 37097051 37097571 -139876569 - L1ME4a LINE L1 -179 5942 5329 763 336 22 38 chrX 37097573 37097888 -139876252 - L1ME4a LINE L1 -826 5320 5011 717 324 20 4 chrX 37097888 37098138 -139876002 + MIR SINE MIR 7 260 -2 347 301 53 45 chrX 37098262 37098508 -139875632 - L1ME4a LINE L1 -1217 4929 4682 249 279 0 0 chrX 37098609 37098695 -139875445 + CT-rich Low_complexity Low_complexity 1 86 0 221 348 104 37 chrX 37098769 37098904 -139875236 - MIR3 SINE MIR -28 180 37 1413 134 16 8 chrX 37100310 37100557 -139873583 - MLT1C LTR MaLR -1 466 218 188 277 157 0 chrX 37100948 37101031 -139873109 + MIR3 SINE MIR 112 207 -1 948 282 64 6 chrX 37101365 37101723 -139872417 + L2 LINE L2 2264 2642 -672 288 0 0 0 chrX 37102016 37102048 -139872092 + (TG)n Simple_repeat Simple_repeat 2 33 0 566 269 0 7 chrX 37102766 37102907 -139871233 + MIR SINE MIR 61 200 -62 564 216 61 2 chrX 37104062 37104196 -139869944 + MIR SINE MIR 14 146 -63 683 233 7 9 chrX 37104202 37104358 -139869782 - MIR SINE MIR -61 147 7 555 16 0 0 chrX 37104449 37104513 -139869627 + (TC)n Simple_repeat Simple_repeat 1 64 0 217 50 25 25 chrX 37104512 37104552 -139869588 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 2290 90 0 3 chrX 37105474 37105775 -139868365 + AluSg1 SINE Alu 1 300 -9 396 171 276 0 chrX 37105886 37105991 -139868149 - MER45A DNA AcHobo -44 134 1 349 223 253 30 chrX 37105994 37106160 -139867980 - MIR SINE MIR -35 227 25 2282 107 0 0 chrX 37106289 37106599 -139867541 + AluSx SINE Alu 1 310 -2 228 282 176 48 chrX 37107226 37107394 -139866746 + MIR SINE MIR 36 225 -37 216 330 18 0 chrX 37107904 37108016 -139866124 + (CCCTAA)n Simple_repeat Simple_repeat 2 115 0 271 354 17 11 chrX 37108635 37108813 -139865327 + (CCCCAA)n Simple_repeat Simple_repeat 1 179 0 210 234 0 0 chrX 37109594 37109641 -139864499 + (CCCCAG)n Simple_repeat Simple_repeat 6 52 0 206 310 17 43 chrX 37110824 37110940 -139863200 - MIR SINE MIR -134 128 16 189 147 0 0 chrX 37112356 37112390 -139861750 + (CACCC)n Simple_repeat Simple_repeat 2 35 0 1778 130 52 0 chrX 37114449 37114770 -139859370 + AluSx SINE Alu 1 335 0 366 250 119 45 chrX 37114774 37115042 -139859098 + L1MC5 LINE L1 7645 7932 -29 2259 99 0 10 chrX 37115046 37115358 -139858782 + AluSc SINE Alu 1 309 0 245 315 11 43 chrX 37115365 37115549 -139858591 + (CAGAGA)n Simple_repeat Simple_repeat 2 179 0 390 299 19 22 chrX 37115604 37115861 -139858279 + GA-rich Low_complexity Low_complexity 1 257 -652 1830 170 20 0 chrX 37115861 37116167 -139857973 + AluJb SINE Alu 1 312 0 390 299 19 22 chrX 37116167 37116516 -139857624 + GA-rich Low_complexity Low_complexity 257 909 0 2198 90 0 0 chrX 37116627 37116904 -139857236 + AluSx SINE Alu 1 277 -35 192 40 0 0 chrX 37116905 37116930 -139857210 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 269 311 19 10 chrX 37116983 37117086 -139857054 - MIR SINE MIR -71 191 88 646 264 288 5 chrX 37117959 37118338 -139855802 - L2 LINE L2 -1 3312 2827 471 355 23 14 chrX 37118913 37119130 -139855010 + L1M4 LINE L1 5097 5315 -831 2099 140 3 0 chrX 37119201 37119508 -139854632 - AluSx SINE Alu -4 308 1 928 236 24 5 chrX 37119551 37119759 -139854381 + MIR SINE MIR 24 235 -27 2086 101 14 10 chrX 37120144 37120440 -139853700 - AluSx SINE Alu -15 297 1 2018 136 0 10 chrX 37120440 37120747 -139853393 - AluJb SINE Alu -6 306 1 605 217 97 11 chrX 37121289 37121436 -139852704 - MIR SINE MIR 0 262 96 1881 100 64 18 chrX 37121436 37121717 -139852423 + AluSg SINE Alu 1 294 -16 605 217 97 11 chrX 37121717 37121744 -139852396 - MIR SINE MIR -166 96 73 1283 180 118 37 chrX 37121848 37122120 -139852020 + AluJo SINE Alu 3 296 -6 2292 95 0 22 chrX 37122336 37122652 -139851488 + AluSg SINE Alu 1 309 -1 2335 93 0 3 chrX 37122657 37122959 -139851181 + AluSc SINE Alu 1 301 -8 564 262 143 18 chrX 37123127 37123295 -139850845 - MIR SINE MIR -62 200 12 2316 95 0 0 chrX 37124207 37124513 -139849627 + AluSx SINE Alu 1 306 -6 480 35 0 0 chrX 37124837 37124895 -139849245 + (TG)n Simple_repeat Simple_repeat 2 59 0 443 244 81 56 chrX 37125477 37125637 -139848503 + MIR SINE MIR 97 260 -2 2225 110 0 0 chrX 37125722 37126030 -139848110 + AluSx SINE Alu 1 308 -4 753 164 0 0 chrX 37126056 37126178 -139847962 + FLAM_C SINE Alu 14 135 -8 1000 163 18 0 chrX 37126932 37127098 -139847042 + FRAM SINE Alu 1 161 -15 342 326 61 8 chrX 37127103 37127235 -139846905 - L1M4 LINE L1 -1674 4472 4334 219 340 20 20 chrX 37127676 37127826 -139846314 + (CCCCAA)n Simple_repeat Simple_repeat 5 154 0 327 227 202 34 chrX 37127936 37128055 -139846085 + MIR SINE MIR 11 149 -113 857 213 51 37 chrX 37128057 37128273 -139845867 - MIR SINE MIR -29 233 15 258 350 11 17 chrX 37128337 37128514 -139845626 + (CCCCAA)n Simple_repeat Simple_repeat 5 180 0 2057 17 3 109 chrX 37130789 37131107 -139843033 + AluY SINE Alu 20 306 0 757 157 7 29 chrX 37131112 37131252 -139842888 + FLAM_C SINE Alu 7 143 0 2212 100 0 28 chrX 37131263 37131584 -139842556 + AluSx SINE Alu 1 312 0 2355 77 0 13 chrX 37131853 37132166 -139841974 + AluSg SINE Alu 1 309 -1 185 333 0 13 chrX 37132721 37132796 -139841344 + L2 LINE L2 2965 3038 -234 * 994 251 85 89 chrX 37132783 37133094 -139841046 - L2 LINE L2 0 3313 3003 2018 141 3 7 chrX 37133094 37133400 -139840740 + AluJo SINE Alu 1 305 -7 994 251 85 89 chrX 37133400 37133546 -139840594 - L2 LINE L2 -310 3003 2858 681 254 75 40 chrX 37134982 37135210 -139838930 - MIR SINE MIR -21 241 6 404 275 166 48 chrX 37135137 37135366 -139838774 + MIR SINE MIR 7 262 0 * 495 238 0 9 chrX 37136048 37136153 -139837987 - L2 LINE L2 -3 3310 3207 450 250 0 48 chrX 37136257 37136445 -139837695 + (CCCCAA)n Simple_repeat Simple_repeat 2 180 0 449 279 23 12 chrX 37136467 37136639 -139837501 + (CCCCAA)n Simple_repeat Simple_repeat 1 174 0 2311 96 0 6 chrX 37136688 37137000 -139837140 + AluSg SINE Alu 1 310 0 2257 75 26 10 chrX 37137098 37137403 -139836737 - AluY SINE Alu -1 310 1 1674 230 40 50 chrX 37138334 37138723 -139835417 - L2 LINE L2 -2 3311 2920 2192 109 0 10 chrX 37138723 37139025 -139835115 - AluSq SINE Alu -14 299 1 1674 230 40 50 chrX 37139025 37139060 -139835080 - L2 LINE L2 -393 2920 2886 1434 100 193 28 chrX 37139060 37139309 -139834831 + AluSc SINE Alu 3 292 -7 1674 230 40 50 chrX 37139309 37139554 -139834586 - L2 LINE L2 -427 2886 2638 2253 100 0 7 chrX 37139758 37140068 -139834072 - AluSx SINE Alu -4 308 1 1248 172 9 5 chrX 37140432 37140653 -139833487 + AluJo SINE Alu 86 307 -5 611 213 8 8 chrX 37140714 37140841 -139833299 - L2 LINE L2 -3 3310 3184 225 291 0 0 chrX 37140854 37140909 -139833231 - MIR SINE MIR -28 234 180 330 132 0 0 chrX 37140936 37140989 -139833151 + (GGA)n Simple_repeat Simple_repeat 1 53 0 248 247 41 63 chrX 37141596 37141712 -139832428 - MIR SINE MIR -66 142 30 573 271 99 36 chrX 37143234 37143455 -139830685 + MIR SINE MIR 4 238 -24 2141 108 9 22 chrX 37143463 37143779 -139830361 + AluSx SINE Alu 1 312 0 258 160 20 0 chrX 37143793 37143843 -139830297 + MIR SINE MIR 212 262 0 590 306 46 5 chrX 37143879 37144098 -139830042 - MIR SINE MIR -1 261 34 397 288 166 53 chrX 37145720 37145778 -139828362 - MLT1L LTR MaLR -21 594 544 514 283 11 48 chrX 37145778 37145864 -139828276 - MER104 DNA MER2_type 0 180 1 499 248 0 0 chrX 37145864 37145965 -139828175 - HsTC2 DNA Tc2 -1797 101 1 397 288 166 53 chrX 37145965 37146243 -139827897 - MLT1L LTR MaLR -71 544 220 184 348 0 45 chrX 37146755 37146844 -139827296 + L2 LINE L2 3138 3222 -50 205 146 98 0 chrX 37151164 37151205 -139822935 - MIR3 SINE MIR -48 160 116 210 208 0 0 chrX 37151391 37151444 -139822696 + GA-rich Low_complexity Low_complexity 2 54 0 1634 172 3 3 chrX 37151595 37151880 -139822260 + AluJb SINE Alu 1 285 -27 243 61 0 0 chrX 37151880 37151913 -139822227 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 655 254 35 46 chrX 37152424 37152503 -139821637 + MIR SINE MIR 20 98 -164 2233 85 0 13 chrX 37152503 37152809 -139821331 - AluSx SINE Alu -10 302 1 655 254 35 46 chrX 37152809 37152926 -139821214 + MIR SINE MIR 98 214 -48 21 0 0 0 chrX 37152955 37152976 -139821164 + AT_rich Low_complexity Low_complexity 1 21 0 1868 155 3 0 chrX 37152996 37153299 -139820841 + AluJb SINE Alu 6 309 -3 2312 97 3 0 chrX 37154301 37154611 -139819529 - AluSq SINE Alu -2 311 1 492 209 76 9 chrX 37154659 37154764 -139819376 - MIR SINE MIR -63 145 34 204 40 0 0 chrX 37155813 37155838 -139818302 + (GGA)n Simple_repeat Simple_repeat 1 25 0 213 354 0 0 chrX 37155868 37155967 -139818173 + GA-rich Low_complexity Low_complexity 2 100 0 219 306 0 0 chrX 37156389 37156438 -139817702 - L2 LINE L2 -3 3310 3262 769 273 103 35 chrX 37156697 37157103 -139817037 - L2 LINE L2 -377 2937 2504 366 282 64 7 chrX 37157092 37157278 -139816862 - MIR SINE MIR -28 234 2 * 1984 120 0 3 chrX 37157356 37157647 -139816493 + AluJb SINE Alu 1 290 -22 1786 124 3 54 chrX 37157682 37158000 -139816140 + AluSx SINE Alu 1 303 0 700 336 33 0 chrX 37158001 37158275 -139815865 + L1MC/D LINE L1 5433 5715 -2093 975 249 36 20 chrX 37158429 37158678 -139815462 + MIR SINE MIR 7 259 -3 975 278 108 36 chrX 37158696 37158890 -139815250 - L1MC4a LINE L1 -1870 5938 5759 1989 101 0 44 chrX 37158890 37159206 -139814934 + AluSx SINE Alu 1 302 -10 975 278 108 36 chrX 37159206 37159483 -139814657 - L1MC4a LINE L1 -2049 5759 5433 2167 107 0 10 chrX 37159484 37159792 -139814348 - AluSx SINE Alu -7 305 1 200 318 130 36 chrX 37159823 37160015 -139814125 - L2 LINE L2 -1390 1924 1715 601 269 18 6 chrX 37160080 37160251 -139813889 + MIR SINE MIR 56 228 -34 34 0 0 0 chrX 37160468 37160502 -139813638 + GC_rich Low_complexity Low_complexity 1 34 0 292 268 71 6 chrX 37162076 37162244 -139811896 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 * 402 286 17 11 chrX 37162187 37162365 -139811775 + GA-rich Low_complexity Low_complexity 2 180 0 441 218 40 23 chrX 37162374 37162548 -139811592 + (CAGA)n Simple_repeat Simple_repeat 2 178 0 * 465 233 0 39 chrX 37162455 37162635 -139811505 + (CAGAGA)n Simple_repeat Simple_repeat 6 178 0 193 109 43 0 chrX 37162661 37162707 -139811433 + (CAGAGA)n Simple_repeat Simple_repeat 4 51 0 331 224 0 26 chrX 37165364 37165440 -139808700 + L2 LINE L2 3197 3270 -2 236 304 51 0 chrX 37165442 37165521 -139808619 + L1ME LINE L1 5615 5697 -424 2785 84 38 5 chrX 37165655 37166047 -139808093 - L1PA8 LINE L1 0 6172 5768 3881 74 9 17 chrX 37166048 37166478 -139807662 + L1PA8A LINE L1 5058 5479 -652 2234 85 0 0 chrX 37166478 37166806 -139807334 + AluSq SINE Alu 1 328 0 3881 74 9 17 chrX 37166806 37167092 -139807048 + L1PA8A LINE L1 5479 5766 -365 1452 241 76 32 chrX 37167502 37167909 -139806231 - MER77 LTR ERV1 -6 599 175 566 252 52 19 chrX 37167988 37168143 -139805997 - MER77 LTR ERV1 -393 212 53 681 280 42 17 chrX 37168216 37168455 -139805685 - MIR SINE MIR -3 259 15 1276 265 46 33 chrX 37168790 37168912 -139805228 - L2 LINE L2 0 3313 3194 1061 206 33 9 chrX 37168912 37169098 -139805042 - MER58A DNA MER1_type -2197 223 30 2049 141 0 0 chrX 37169098 37169404 -139804736 + AluSx SINE Alu 1 306 -6 1061 206 33 9 chrX 37169404 37169431 -139804709 - MER58A DNA MER1_type -2390 30 5 1276 265 46 33 chrX 37169431 37169701 -139804439 - L2 LINE L2 -119 3194 2916 691 277 147 21 chrX 37169698 37169983 -139804157 + L2 LINE L2 2987 3307 -6 * 1897 138 92 14 chrX 37170008 37170356 -139803784 - THE1C LTR MaLR 0 375 1 2426 133 54 3 chrX 37170399 37170767 -139803373 + MSTC LTR MaLR 42 428 0 396 0 0 0 chrX 37171309 37171353 -139802787 + (CA)n Simple_repeat Simple_repeat 1 44 0 9153 35 0 0 chrX 37171474 37173373 -139800767 - L1PA3 LINE L1 0 6155 4300 8527 29 3 0 chrX 37173373 37174375 -139799765 + L1PA3 LINE L1 3325 4329 -1817 2160 100 10 0 chrX 37174375 37174675 -139799465 - AluY SINE Alu -8 303 1 552 299 40 17 chrX 37175016 37175190 -139798950 + MIR SINE MIR 85 262 0 2050 107 47 0 chrX 37175495 37175793 -139798347 - AluSx SINE Alu 0 312 1 382 243 27 0 chrX 37176149 37176223 -139797917 - MER5A DNA MER1_type -76 113 38 252 288 25 34 chrX 37176275 37176393 -139797747 + MER117 DNA MER1_type 79 195 -2 351 96 0 0 chrX 37176808 37176860 -139797280 + (GGA)n Simple_repeat Simple_repeat 3 54 0 2030 116 0 31 chrX 37176928 37177246 -139796894 + AluSx SINE Alu 1 308 -4 22240 132 28 11 chrX 37177257 37180715 -139793425 + L1MA2 LINE L1 14 3529 -4036 5669 132 20 4 chrX 37180700 37182138 -139792002 + L1MA2 LINE L1 5723 7181 -542 * 6205 85 12 40 chrX 37182138 37183319 -139790821 + L1PA10 LINE L1 4995 6151 -17 198 0 0 0 chrX 37183319 37183341 -139790799 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 6205 85 12 40 chrX 37183341 37183355 -139790785 + L1PA10 LINE L1 6151 6164 -4 3646 72 47 6 chrX 37183355 37183862 -139790278 + L1MA2 LINE L1 7188 7723 0 486 245 58 36 chrX 37184229 37184368 -139789772 - MIR SINE MIR -25 237 96 198 386 23 8 chrX 37184917 37185049 -139789091 + L2 LINE L2 2724 2857 -457 324 270 108 0 chrX 37185134 37185245 -139788895 - MIR3 SINE MIR -15 193 71 241 274 206 0 chrX 37185860 37185933 -139788207 - MIR3 SINE MIR -6 202 115 1894 152 0 31 chrX 37186018 37186340 -139787800 - AluJo SINE Alu 0 312 1 635 299 97 30 chrX 37186751 37187112 -139787028 - MARNA DNA Mariner -54 532 148 508 292 56 40 chrX 37187201 37187451 -139786689 + MIR SINE MIR 7 260 -2 204 211 0 0 chrX 37187653 37187691 -139786449 + CT-rich Low_complexity Low_complexity 1 38 0 183 318 95 0 chrX 37187747 37187810 -139786330 - MIR SINE MIR -57 151 83 416 277 142 26 chrX 37187917 37188072 -139786068 - MIR SINE MIR -8 254 82 270 374 15 15 chrX 37188581 37188712 -139785428 + MIR SINE MIR 17 147 -115 1452 165 70 11 chrX 37189037 37189309 -139784831 + AluJb SINE Alu 3 290 -22 2103 103 0 26 chrX 37189315 37189627 -139784513 + AluSg SINE Alu 1 304 -6 271 277 40 20 chrX 37190018 37190119 -139784021 + MIR3 SINE MIR 105 207 -1 639 201 17 0 chrX 37190556 37190730 -139783410 + GA-rich Low_complexity Low_complexity 1 177 0 1111 181 144 25 chrX 37190981 37191258 -139782882 + L1MD3 LINE L1 7577 7886 -109 214 279 67 77 chrX 37191292 37191396 -139782744 - L3 LINE CR1 -1430 147 45 496 167 13 0 chrX 37191543 37191621 -139782519 + AluJ/FLAM SINE Alu 2 80 -232 782 264 36 36 chrX 37192108 37192370 -139781770 + MIR SINE MIR 3 262 0 1633 134 46 11 chrX 37192381 37192664 -139781476 + L1MB7 LINE L1 5876 6168 -16 505 230 48 0 chrX 37192772 37192898 -139781242 + MIR SINE MIR 131 262 0 579 294 37 37 chrX 37193025 37193212 -139780928 + MIR SINE MIR 5 191 -71 2289 115 131 11 chrX 37193229 37193611 -139780529 + MSTA LTR MaLR 1 428 0 240 330 0 27 chrX 37193661 37193773 -139780367 + A-rich Low_complexity Low_complexity 3 111 0 1664 139 77 0 chrX 37194015 37194288 -139779852 - AluSp SINE Alu -19 294 1 1054 68 0 0 chrX 37194293 37194425 -139779715 - AluSq/x SINE Alu -180 133 2 1861 161 0 7 chrX 37194484 37194788 -139779352 - AluJo SINE Alu -8 304 3 261 0 0 0 chrX 37195700 37195729 -139778411 + (A)n Simple_repeat Simple_repeat 1 29 0 225 146 0 0 chrX 37196260 37196308 -139777832 + (GA)n Simple_repeat Simple_repeat 2 49 0 596 213 75 25 chrX 37196540 37196700 -139777440 + MLT1B LTR MaLR 4 171 -219 294 216 0 0 chrX 37196724 37196798 -139777342 + T-rich Low_complexity Low_complexity 1 74 0 1067 203 10 0 chrX 37196801 37196998 -139777142 + MLT1B LTR MaLR 192 390 0 2353 152 44 26 chrX 37197370 37197759 -139776381 - MSTD LTR MaLR 0 396 1 1894 206 48 28 chrX 37199258 37199715 -139774425 - MLT1C LTR MaLR -1 466 1 217 317 83 21 chrX 37199949 37200094 -139774046 - MIR SINE MIR -88 174 21 1420 175 73 94 chrX 37200445 37200679 -139773461 - MLT1A2 LTR MaLR 0 374 150 1536 139 31 4 chrX 37200679 37200938 -139773202 - L1MA4 LINE L1 -6 6294 6029 1420 175 73 94 chrX 37200938 37201085 -139773055 - MLT1A2 LTR MaLR -224 150 1 201 314 23 23 chrX 37201141 37201227 -139772913 + MIR SINE MIR 79 164 -98 225 279 13 0 chrX 37201597 37201676 -139772464 + L3b LINE CR1 1311 1390 -193 6066 58 19 26 chrX 37201684 37202455 -139771685 + MER4E LTR ERV1 1 766 0 296 403 16 0 chrX 37202800 37202929 -139771211 - MIR SINE MIR -130 132 2 409 350 52 38 chrX 37203010 37203301 -139770839 + L2 LINE L2 2464 2758 -556 1859 192 28 11 chrX 37203308 37203667 -139770473 + MLT1A1 LTR MaLR 1 365 0 301 243 74 128 chrX 37203705 37204001 -139770139 + L2 LINE L2 2933 3212 -60 15158 147 24 48 chrX 37205436 37205596 -139768544 - L1MA5 LINE L1 -3 6297 6135 2329 103 0 3 chrX 37205596 37205906 -139768234 + AluSg SINE Alu 2 310 0 15158 147 24 48 chrX 37205906 37207586 -139766554 - L1MA5 LINE L1 -165 6135 4416 297 0 0 0 chrX 37207586 37207619 -139766521 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 15158 147 24 48 chrX 37207619 37209515 -139764625 - L1MA5 LINE L1 -1884 4416 2676 2210 129 3 0 chrX 37209515 37209826 -139764314 + AluSx SINE Alu 1 312 0 15158 147 24 48 chrX 37209826 37210204 -139763936 - L1MA5 LINE L1 -3624 2676 2290 1907 141 0 0 chrX 37210986 37211312 -139762828 + AluJb SINE Alu 1 326 0 265 276 218 0 chrX 37211473 37211560 -139762580 - MER91C DNA MER1_type -32 108 3 3115 159 26 110 chrX 37212314 37212968 -139761172 + MER77 LTR ERV1 3 601 -4 364 303 33 35 chrX 37213995 37214162 -139759978 - MIR SINE MIR -67 141 18 240 290 14 14 chrX 37214382 37214451 -139759689 + L2 LINE L2 3183 3251 -21 291 290 176 23 chrX 37214587 37214718 -139759422 + MIR SINE MIR 92 242 -20 249 273 38 91 chrX 37216075 37216207 -139757933 - MIR SINE MIR -112 150 26 2123 151 0 0 chrX 37216813 37217125 -139757015 + AluSx SINE Alu 1 312 0 2628 139 148 17 chrX 37218299 37218682 -139755458 - MLT2B1 LTR ERVL 0 520 66 1297 176 120 50 chrX 37218682 37219023 -139755117 - MLT1A1 LTR MaLR 0 365 1 2628 139 148 17 chrX 37219023 37219099 -139755041 - MLT2B1 LTR ERVL -454 66 1 2013 144 0 22 chrX 37219435 37219754 -139754386 - AluJb SINE Alu 0 312 1 1277 185 14 149 chrX 37220176 37220547 -139753593 - MLT1A1 LTR MaLR 0 365 56 2310 102 0 0 chrX 37220547 37220842 -139753298 + AluSc SINE Alu 3 297 -12 1277 185 14 149 chrX 37220842 37220892 -139753248 - MLT1A1 LTR MaLR -309 56 1 2668 270 31 71 chrX 37221363 37222349 -139751791 + L1M4b LINE L1 11 1202 -5657 1411 181 17 148 chrX 37222544 37222582 -139751558 - MLT1A1 LTR MaLR 0 365 324 2067 147 0 0 chrX 37222582 37222882 -139751258 + AluSx SINE Alu 1 300 -12 1411 181 17 148 chrX 37222882 37223263 -139750877 - MLT1A1 LTR MaLR -41 324 1 1654 197 33 76 chrX 37223375 37223653 -139750487 + L1M4b LINE L1 1206 1456 -5403 1828 175 0 14 chrX 37223653 37223950 -139750190 + AluJo SINE Alu 1 293 -19 1654 197 33 76 chrX 37223950 37224158 -139749982 + L1M4b LINE L1 1456 1671 -5188 3021 179 2 0 chrX 37224173 37224708 -139749432 + L1 LINE L1 3682 4217 -1929 7064 162 153 35 chrX 37224708 37226239 -139747901 - MER52A LTR ERV1 0 1755 45 202 283 17 0 chrX 37226561 37226621 -139747519 + (CCA)n Simple_repeat Simple_repeat 3 63 0 299 175 16 0 chrX 37226673 37226736 -139747404 + L1 LINE L1 4214 4277 -1869 384 219 95 19 chrX 37226741 37226846 -139747294 + MER67A LTR ERV1 431 543 0 2505 160 52 27 chrX 37227087 37227530 -139746610 - MSTB2 LTR MaLR 0 457 4 1223 201 44 103 chrX 37228070 37228560 -139745580 - LTR34 LTR ERV1 -4 695 136 4829 116 31 25 chrX 37228621 37229138 -139745002 + LTR8 LTR ERV1 1 524 -167 2342 111 0 0 chrX 37229138 37229444 -139744696 + AluSx SINE Alu 1 306 -6 4829 116 31 25 chrX 37229444 37229613 -139744527 + LTR8 LTR ERV1 524 691 0 404 164 25 115 chrX 37229638 37229673 -139744467 - MER4C LTR ERV1 -349 116 79 1860 118 0 49 chrX 37229673 37229960 -139744180 + AluSx SINE Alu 1 273 -39 404 164 25 115 chrX 37229960 37230046 -139744094 - MER4C LTR ERV1 -386 79 6 789 260 60 44 chrX 37230149 37230468 -139743672 - LTR33 LTR ERVL -58 463 140 1254 262 99 52 chrX 37230528 37230822 -139743318 + MLT1F1 LTR MaLR 3 282 -285 900 185 135 126 chrX 37230822 37231378 -139742762 - MER34B LTR ERV1 0 565 5 1254 262 99 52 chrX 37231378 37231558 -139742582 + MLT1F1 LTR MaLR 282 507 -60 5842 75 1 0 chrX 37231558 37232248 -139741892 - LTR8 LTR ERV1 0 691 1 1254 262 99 52 chrX 37232248 37232307 -139741833 + MLT1F1 LTR MaLR 507 562 -5 250 309 73 32 chrX 37232301 37232424 -139741716 - LTR33 LTR ERVL -393 128 1 * 2795 92 23 5 chrX 37232449 37232839 -139741301 + MER4E LTR ERV1 1 397 -382 195 114 0 0 chrX 37233203 37233238 -139740902 + (TA)n Simple_repeat Simple_repeat 2 36 0 2410 170 43 47 chrX 37233310 37233797 -139740343 - MER31A LTR ERV1 0 485 1 306 259 129 0 chrX 37233941 37234026 -139740114 + L2 LINE L2 3152 3247 -25 1309 104 21 10 chrX 37234044 37234236 -139739904 + L1M1 LINE L1 15 208 -7357 2635 118 100 5 chrX 37234254 37234645 -139739495 + MSTA LTR MaLR 1 428 0 5960 109 27 11 chrX 37234662 37235665 -139738475 - L1PB2 LINE L1 -1 6150 5126 * 7497 194 44 71 chrX 37235661 37237414 -139736726 + L1M1 LINE L1 730 2417 -5148 1875 150 3 19 chrX 37237414 37237728 -139736412 + AluSq SINE Alu 1 309 -4 7497 194 44 71 chrX 37237728 37238074 -139736066 + L1M1 LINE L1 2417 2771 -4794 3463 176 36 5 chrX 37238073 37238816 -139735324 + L1M1 LINE L1 4226 4991 -2574 * 936 97 8 0 chrX 37238816 37238940 -139735200 + AluY SINE Alu 1 125 -186 469 209 183 20 chrX 37238947 37239100 -139735040 - MER39 LTR ERV1 -526 181 4 1574 175 132 9 chrX 37239195 37239521 -139734619 - MER31B LTR ERV1 0 466 101 376 214 12 32 chrX 37239519 37239636 -139734504 + MER34C LTR ERV1 7 111 -474 * 192 77 0 0 chrX 37239637 37239663 -139734477 + (A)n Simple_repeat Simple_repeat 1 26 0 712 189 49 70 chrX 37239780 37240074 -139734066 + MER34B LTR ERV1 392 565 0 459 196 52 0 chrX 37240074 37240171 -139733969 - MER31B LTR ERV1 -364 102 1 33 43 0 0 chrX 37240447 37240494 -139733646 + AT_rich Low_complexity Low_complexity 1 47 0 930 243 176 52 chrX 37240561 37240981 -139733159 - LTR29 LTR ERV1 -150 472 1 504 148 0 0 chrX 37241121 37241202 -139732938 - AluSp/q SINE Alu -1 312 232 844 113 0 0 chrX 37241215 37241330 -139732810 - AluSg1 SINE Alu -194 115 1 768 134 42 0 chrX 37241331 37241450 -139732690 + MER41B LTR ERV1 512 635 0 250 193 53 0 chrX 37241450 37241504 -139732636 - LTR48 LTR ERV1 -657 130 74 476 124 38 19 chrX 37241536 37241641 -139732499 + LTR37A LTR ERV1 320 426 0 3529 114 9 17 chrX 37242597 37243089 -139731051 + MER34C LTR ERV1 62 551 -34 4350 136 31 50 chrX 37243089 37243883 -139730257 + MER4E LTR ERV1 1 779 0 3529 114 9 17 chrX 37243883 37243918 -139730222 + MER34C LTR ERV1 551 585 0 995 227 0 0 chrX 37244455 37244640 -139729500 + MER5A DNA MER1_type 1 185 -4 279 246 88 26 chrX 37245432 37245546 -139728594 + MER57-int LTR ERV1 5682 5802 -1735 610 12 37 0 chrX 37245551 37245633 -139728507 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 1370 165 99 6 chrX 37246156 37246491 -139727649 + AluJo SINE Alu 40 282 -30 287 242 61 24 chrX 37248542 37248676 -139725464 + MIR SINE MIR 90 232 -30 1481 77 91 0 chrX 37249122 37249330 -139724810 - MER30 DNA MER1_type 0 230 4 484 201 91 19 chrX 37249357 37249511 -139724629 + MIR SINE MIR 98 262 0 625 193 9 0 chrX 37251362 37251471 -139722669 + Tigger3(Golem) DNA MER2_type 1 110 -2919 345 190 0 0 chrX 37251476 37251534 -139722606 + Tigger3(Golem) DNA MER2_type 85 142 -2887 * 1583 73 0 10 chrX 37251531 37251737 -139722403 + Tigger3(Golem) DNA MER2_type 2771 2974 -55 1212 62 0 0 chrX 37251745 37251889 -139722251 + AluSg/x SINE Alu 156 299 -11 1742 116 160 25 chrX 37251889 37252208 -139721932 - MSTA LTR MaLR -66 362 1 399 145 0 26 chrX 37252264 37252340 -139721800 + MER53 DNA DNA 115 188 -1 1748 161 139 3 chrX 37252344 37252674 -139721466 - MER89 LTR ERV1 0 559 185 3764 156 17 3 chrX 37252737 37253490 -139720650 + L1MB7 LINE L1 5323 6137 -29 268 247 21 145 chrX 37254146 37254272 -139719868 - MER5B DNA MER1_type -6 172 74 2004 129 3 14 chrX 37254272 37254447 -139719693 - AluSx SINE Alu 0 308 136 2406 92 0 0 chrX 37254447 37254751 -139719389 - AluY SINE Alu -7 304 1 2004 129 3 14 chrX 37254751 37254886 -139719254 - AluSx SINE Alu -172 136 1 268 247 21 145 chrX 37254886 37254944 -139719196 - MER5B DNA MER1_type -104 74 10 1596 126 49 8 chrX 37254961 37255207 -139718933 + L1MC/D LINE L1 5450 5705 -628 399 255 14 101 chrX 37255193 37255314 -139718826 - L1MDb LINE L1 -5308 1101 1004 * 2282 107 0 0 chrX 37255314 37255605 -139718535 - AluSg1 SINE Alu -18 291 1 399 255 14 101 chrX 37255605 37255691 -139718449 - L1MDb LINE L1 -5405 1004 912 1579 181 20 23 chrX 37255698 37256001 -139718139 - AluJo SINE Alu -10 302 1 1062 229 71 34 chrX 37256010 37256222 -139717918 - L1MDa LINE L1 -5109 1431 1228 2194 107 7 3 chrX 37256222 37256512 -139717628 - AluSx SINE Alu -21 291 1 1062 229 71 34 chrX 37256512 37256706 -139717434 - L1MDa LINE L1 -5312 1228 1010 928 129 34 0 chrX 37257875 37258022 -139716118 + AluJb SINE Alu 140 291 -21 450 0 0 0 chrX 37258973 37259023 -139715117 + (TG)n Simple_repeat Simple_repeat 2 51 0 632 102 11 0 chrX 37260149 37260266 -139713874 + FLAM_A SINE Alu 25 142 0 403 91 0 39 chrX 37260338 37260415 -139713725 + L1MB2 LINE L1 6098 6171 0 558 196 12 168 chrX 37260465 37260869 -139713271 - L1MC4 LINE L1 0 8042 7702 2063 124 0 31 chrX 37260869 37261191 -139712949 - AluSx SINE Alu 0 312 1 244 290 0 0 chrX 37261194 37261263 -139712877 - L1MC4 LINE L1 -467 7575 7507 1873 160 7 0 chrX 37261853 37262147 -139711993 - AluSx SINE Alu -15 297 2 920 144 8 0 chrX 37262171 37262303 -139711837 - AluSq/x SINE Alu -179 133 1 730 229 18 13 chrX 37262328 37262515 -139711625 - L1MC4 LINE L1 -207 7678 7416 318 148 0 0 chrX 37262890 37262944 -139711196 + (TA)n Simple_repeat Simple_repeat 1 54 0 259 233 47 0 chrX 37262947 37263033 -139711107 + L1MC4 LINE L1 6614 6703 -1339 1011 161 0 0 chrX 37263042 37263222 -139710918 + (TA)n Simple_repeat Simple_repeat 1 180 0 243 0 0 0 chrX 37263222 37263249 -139710891 + (T)n Simple_repeat Simple_repeat 1 27 0 2097 135 0 0 chrX 37263448 37263737 -139710403 - AluSx SINE Alu -23 289 1 187 322 82 7 chrX 37264028 37264174 -139709966 + MIR3 SINE MIR 52 208 0 1009 183 0 59 chrX 37264402 37264604 -139709536 - AluJb SINE Alu -38 274 85 649 308 59 7 chrX 37265307 37265596 -139708544 - L1M4 LINE L1 -1658 4488 4185 990 106 0 0 chrX 37265614 37265746 -139708394 - AluJb SINE Alu -180 132 1 586 293 108 3 chrX 37265766 37266063 -139708077 - L1M4 LINE L1 -1978 4168 3841 1637 175 14 20 chrX 37266067 37266359 -139707781 - AluJb SINE Alu -9 303 14 2453 152 0 0 chrX 37266372 37266748 -139707392 - MER41D LTR ERV1 -181 376 1 843 231 20 43 chrX 37266748 37266871 -139707269 - L1MDa LINE L1 -4986 1554 1430 1535 189 10 23 chrX 37266871 37267177 -139706963 - AluJo SINE Alu -10 302 1 843 231 20 43 chrX 37267177 37267356 -139706784 - L1MDa LINE L1 -5110 1430 1259 3830 131 11 23 chrX 37267383 37268023 -139706117 + L1MC1 LINE L1 5696 6327 -6 23 68 0 0 chrX 37268023 37268067 -139706073 + AT_rich Low_complexity Low_complexity 1 44 0 833 222 29 54 chrX 37268077 37268235 -139705905 + L1MB7 LINE L1 2170 2320 -3826 2451 85 0 0 chrX 37268235 37268530 -139705610 + AluSg SINE Alu 1 295 -15 833 222 29 54 chrX 37268530 37268650 -139705490 + L1MB7 LINE L1 2320 2441 -3705 * 5945 196 38 25 chrX 37268635 37269585 -139704555 + L1MB7 LINE L1 3881 4864 -1378 612 187 49 24 chrX 37269585 37269708 -139704432 - FLAM_C SINE Alu -6 127 2 5945 196 38 25 chrX 37269708 37270434 -139703706 + L1MB7 LINE L1 4864 5579 -663 262 247 0 47 chrX 37270430 37270515 -139703625 + L1ME1 LINE L1 5992 6072 -94 * 192 40 0 0 chrX 37270524 37270549 -139703591 + (CA)n Simple_repeat Simple_repeat 2 26 0 7109 125 8 11 chrX 37270570 37272084 -139702056 + L1MA3 LINE L1 4796 6305 0 1432 187 79 94 chrX 37272485 37272929 -139701211 + MER66A LTR ERV1 97 474 -4 225 0 0 0 chrX 37273261 37273286 -139700854 + (A)n Simple_repeat Simple_repeat 1 25 0 2736 172 24 4 chrX 37273792 37274246 -139699894 + MER6 DNA MER2_type 5 467 -398 324 143 0 0 chrX 37275568 37275624 -139698516 + (GGGGA)n Simple_repeat Simple_repeat 1 56 0 381 321 75 36 chrX 37276050 37276302 -139697838 + MLT1K LTR MaLR 3 264 -324 298 286 11 22 chrX 37276335 37276426 -139697714 + MLT1K LTR MaLR 434 523 -65 196 291 101 0 chrX 37278013 37278092 -139696048 - L2 LINE L2 -2 3270 3184 224 290 0 14 chrX 37278371 37278440 -139695700 - MIR3 SINE MIR -41 167 100 2570 71 3 0 chrX 37279243 37279553 -139694587 + AluSp SINE Alu 2 312 -1 2322 85 14 3 chrX 37279567 37279862 -139694278 + AluSc SINE Alu 1 298 -11 1902 142 7 3 chrX 37280103 37280391 -139693749 + AluJb SINE Alu 1 289 -23 3074 167 31 0 chrX 37280580 37281120 -139693020 + L1MB7 LINE L1 5616 6172 -12 1058 116 33 128 chrX 37281166 37281236 -139692904 + MER20 DNA MER1_type 1 76 -143 762 176 0 22 chrX 37281236 37281372 -139692768 - FLAM_C SINE Alu 0 133 1 2369 101 0 3 chrX 37281382 37281688 -139692452 - AluSp SINE Alu -7 306 2 1058 116 33 128 chrX 37281688 37281848 -139692292 + MER20 DNA MER1_type 85 219 0 1616 198 16 3 chrX 37281891 37282199 -139691941 - AluJo SINE Alu 0 312 1 1443 198 87 57 chrX 37283123 37283527 -139690613 + LOR1b LTR ERV1 46 461 0 620 209 85 13 chrX 37283527 37283680 -139690460 + L1ME1 LINE L1 5839 6002 -164 830 180 0 12 chrX 37283703 37283864 -139690276 + L1MA10 LINE L1 6176 6334 0 1527 134 0 5 chrX 37283899 37284116 -139690024 + AluSq SINE Alu 1 216 -97 213 300 0 12 chrX 37284421 37284501 -139689639 + (CAG)n Simple_repeat Simple_repeat 1 79 0 26 0 0 0 chrX 37289124 37289150 -139684990 + AT_rich Low_complexity Low_complexity 1 26 0 2467 93 0 0 chrX 37289150 37289462 -139684678 + AluSx SINE Alu 1 312 0 307 189 103 16 chrX 37290899 37291015 -139683125 - MIR SINE MIR -66 142 66 182 65 65 0 chrX 37291167 37291198 -139682942 + CT-rich Low_complexity Low_complexity 2 34 0 2307 113 0 0 chrX 37291953 37292262 -139681878 + AluSq SINE Alu 3 311 -2 273 29 0 0 chrX 37292349 37292383 -139681757 + (TG)n Simple_repeat Simple_repeat 2 35 0 219 125 0 0 chrX 37292385 37292425 -139681715 + (GA)n Simple_repeat Simple_repeat 1 40 0 676 182 33 0 chrX 37292773 37292894 -139681246 + FRAM SINE Alu 22 146 -30 2030 133 0 13 chrX 37292923 37293224 -139680916 + AluSx SINE Alu 1 297 -15 2215 135 3 0 chrX 37293300 37293633 -139680507 + LTR64 LTR ERVK 1 334 -224 2143 111 69 14 chrX 37293626 37293730 -139680410 + LTR44 LTR ERV1 138 235 -284 * 2130 122 0 3 chrX 37293730 37294026 -139680114 + AluSx SINE Alu 1 295 -17 2143 111 69 14 chrX 37294026 37294283 -139679857 + LTR44 LTR ERV1 235 519 0 501 189 0 22 chrX 37294493 37294583 -139679557 + MER21B LTR ERV1 3 90 -773 1471 157 112 4 chrX 37294605 37294872 -139679268 + MER21B LTR ERV1 19 314 -549 1552 36 0 36 chrX 37294872 37295067 -139679073 + L1PA3 LINE L1 5968 6155 0 242 36 0 0 chrX 37295064 37295092 -139679048 - AluY SINE Alu -260 40 13 27 87 0 0 chrX 37295218 37295287 -139678853 + AT_rich Low_complexity Low_complexity 1 69 0 628 237 19 6 chrX 37295339 37295495 -139678645 + MIR SINE MIR 70 227 -35 542 272 15 41 chrX 37295555 37295750 -139678390 + MIR SINE MIR 40 229 -33 2512 147 54 7 chrX 37295860 37296269 -139677871 - MSTC LTR MaLR 0 428 1 453 210 10 10 chrX 37296371 37296471 -139677669 - L2 LINE L2 0 3313 3214 736 243 131 82 chrX 37296481 37297638 -139676502 + MER52A-int LTR ERV1 45 1444 -4502 1816 160 3 7 chrX 37297969 37298263 -139675877 + AluJb SINE Alu 1 293 -19 1015 23 15 0 chrX 37298263 37298393 -139675747 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 2236 188 65 105 chrX 37298506 37299041 -139675099 + MER52A-int LTR ERV1 834 1389 -3547 1528 161 92 4 chrX 37299041 37299330 -139674810 + AluJb SINE Alu 1 312 0 2236 188 65 105 chrX 37299330 37299522 -139674618 + MER52A-int LTR ERV1 1389 1423 -3513 1612 142 4 0 chrX 37299522 37299775 -139674365 + AluJb SINE Alu 51 304 0 2236 188 65 105 chrX 37299775 37300029 -139674111 + MER52A-int LTR ERV1 1423 1686 -3250 180 0 0 0 chrX 37300050 37300070 -139674070 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2209 97 0 7 chrX 37300074 37300363 -139673777 - AluSx SINE Alu -25 287 1 1378 219 78 66 chrX 37300374 37301014 -139673126 + MER52A-int LTR ERV1 1686 2333 -2603 366 236 57 16 chrX 37301151 37301274 -139672866 + MER52A-int LTR ERV1 2391 2518 -2418 3518 25 0 0 chrX 37301274 37301679 -139672461 + L1PA2 LINE L1 5751 6155 0 2239 167 19 52 chrX 37301689 37301724 -139672416 + MER52A-int LTR ERV1 2509 2544 -2392 1428 111 38 46 chrX 37301724 37301826 -139672314 + L1MA4 LINE L1 6037 6138 -162 1928 172 0 3 chrX 37301826 37302123 -139672017 + AluJb SINE Alu 1 296 -16 1428 111 38 46 chrX 37302123 37302281 -139671859 + L1MA4 LINE L1 6138 6295 -5 2239 167 19 52 chrX 37302281 37302766 -139671374 + MER52A-int LTR ERV1 2544 3012 -1924 600 159 71 32 chrX 37302766 37302892 -139671248 + FLAM_C SINE Alu 2 132 -11 4652 166 54 99 chrX 37302899 37303281 -139670859 + MER52A-int LTR ERV1 2998 3396 -1540 2195 106 10 0 chrX 37303281 37303583 -139670557 + AluSx SINE Alu 1 305 -7 4652 166 54 99 chrX 37303583 37304307 -139669833 + MER52A-int LTR ERV1 3396 4151 -785 2086 109 4 0 chrX 37304307 37304583 -139669557 + AluSq SINE Alu 11 287 -26 4652 166 54 99 chrX 37304583 37304598 -139669542 + MER52A-int LTR ERV1 4151 4165 -771 1716 153 8 0 chrX 37304598 37304860 -139669280 + AluSx SINE Alu 11 274 -38 189 0 0 0 chrX 37304866 37304887 -139669253 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 4652 166 54 99 chrX 37304887 37305067 -139669073 + MER52A-int LTR ERV1 4170 4249 -687 319 218 138 11 chrX 37305073 37305160 -139668980 + LTR37A LTR ERV1 4 101 -325 798 214 153 98 chrX 37305163 37305550 -139668590 + MER52A-int LTR ERV1 4325 4732 -204 516 261 15 0 chrX 37305568 37305698 -139668442 - MER34 LTR ERV1 -410 132 1 266 303 10 20 chrX 37306024 37306123 -139668017 - MIR3 SINE MIR -50 158 61 2284 123 3 0 chrX 37306136 37306503 -139667637 - AluSx SINE Alu 0 368 1 8188 183 104 11 chrX 37307151 37308756 -139665384 + MER52A LTR ERV1 1 1755 0 4672 134 45 82 chrX 37308839 37309777 -139664363 - MER4D LTR ERV1 0 903 1 236 255 66 38 chrX 37309781 37309887 -139664253 + L1ME1 LINE L1 3248 3356 -2790 257 230 81 0 chrX 37309949 37310023 -139664117 + L1ME1 LINE L1 4672 4751 -1395 1996 166 168 109 chrX 37310024 37310515 -139663625 - MLT1E2 LTR MaLR -2 624 92 1936 157 0 3 chrX 37310515 37310820 -139663320 + AluJo SINE Alu 6 309 -3 1996 166 168 109 chrX 37310820 37310913 -139663227 - MLT1E2 LTR MaLR -534 92 6 4330 185 34 27 chrX 37310919 37312324 -139661816 + L1ME1 LINE L1 4747 6161 -5 2193 97 3 17 chrX 37312515 37312813 -139661327 + AluSx SINE Alu 1 294 -18 594 213 0 0 chrX 37313334 37313442 -139660698 - FRAM SINE Alu -9 167 60 1344 224 8 73 chrX 37313442 37313826 -139660314 + LTR37B LTR ERV1 48 406 -62 587 278 76 7 chrX 37313836 37314191 -139659949 + LTR16A LTR ERVL 9 450 0 243 261 0 31 chrX 37314212 37314226 -139659914 + GA-rich Low_complexity Low_complexity 2 15 -49 2068 116 4 0 chrX 37314226 37314501 -139659639 + AluY SINE Alu 1 276 -35 243 261 0 31 chrX 37314501 37314551 -139659589 + GA-rich Low_complexity Low_complexity 15 64 0 930 283 28 47 chrX 37314551 37314911 -139659229 + HERV16 LTR ERVL 38 390 -4606 304 253 12 12 chrX 37314918 37315001 -139659139 - HERV16 LTR ERVL -2258 3396 3314 1718 150 22 76 chrX 37315001 37315183 -139658957 - L1MB2 LINE L1 -37 6134 6058 1930 167 0 16 chrX 37315183 37315495 -139658645 - AluJb SINE Alu 0 312 6 1718 150 22 76 chrX 37315495 37315728 -139658412 - L1MB2 LINE L1 -113 6058 5814 443 149 0 0 chrX 37315750 37315817 -139658323 - AluJb SINE Alu -38 274 208 3911 265 53 50 chrX 37315905 37316250 -139657890 - HERV16 LTR ERVL -1900 3096 2754 1814 149 76 0 chrX 37316250 37316538 -139657602 - AluSx SINE Alu -2 310 1 3911 265 53 50 chrX 37316538 37317191 -139656949 - HERV16 LTR ERVL -2242 2754 2251 2752 124 64 31 chrX 37317191 37317387 -139656753 + MLT1C LTR MaLR 1 189 -278 393 70 0 0 chrX 37317387 37317444 -139656696 + (CA)n Simple_repeat Simple_repeat 1 57 0 2752 124 64 31 chrX 37317444 37317699 -139656441 + MLT1C LTR MaLR 189 467 0 3911 265 53 50 chrX 37317699 37318054 -139656086 - HERV16 LTR ERVL -2745 2251 1899 628 283 25 58 chrX 37318201 37318358 -139655782 + LTR16A LTR ERVL 103 249 -201 1121 188 81 75 chrX 37318358 37318730 -139655410 + MLT1A2 LTR MaLR 1 374 0 628 283 25 58 chrX 37318730 37318848 -139655292 + LTR16A LTR ERVL 249 369 -81 854 126 0 22 chrX 37318864 37318999 -139655141 + FLAM_C SINE Alu 2 133 0 1180 175 5 5 chrX 37319026 37319232 -139654908 + AluJo SINE Alu 85 290 -22 315 250 0 0 chrX 37319291 37319359 -139654781 + LTR37B LTR ERV1 401 468 0 1866 36 5 0 chrX 37321226 37321449 -139652691 + L1PA8 LINE L1 5949 6172 0 2420 79 0 0 chrX 37322662 37322954 -139651186 + AluSx SINE Alu 1 292 -20 7230 55 7 0 chrX 37323035 37324493 -139649647 + L1PA7 LINE L1 4692 6154 0 475 258 0 8 chrX 37325904 37326032 -139648108 + L2 LINE L2 3184 3310 -3 2216 95 23 0 chrX 37326091 37326395 -139647745 + AluSp SINE Alu 3 313 0 45107 40 2 1 chrX 37326588 37332731 -139641409 + L1PA4 LINE L1 1 6152 -3 375 23 0 0 chrX 37332834 37332878 -139641262 + (TG)n Simple_repeat Simple_repeat 2 45 0 2158 119 7 3 chrX 37333521 37333823 -139640317 - AluSx SINE Alu -9 303 1 936 238 8 31 chrX 37333866 37334127 -139640013 - MIR SINE MIR -5 257 3 230 231 154 8 chrX 37334527 37334644 -139639496 + MER113 DNA MER1_type? 91 224 -297 31 26 0 0 chrX 37334674 37334712 -139639428 + AT_rich Low_complexity Low_complexity 1 38 0 1774 165 7 3 chrX 37334712 37334997 -139639143 - AluJo SINE Alu -26 286 1 599 182 0 88 chrX 37335002 37335161 -139638979 + MER104 DNA Tc2 36 180 0 35 0 0 0 chrX 37335186 37335221 -139638919 + AT_rich Low_complexity Low_complexity 1 35 0 394 312 38 0 chrX 37335294 37335451 -139638689 - MIR SINE MIR -40 222 60 470 17 17 0 chrX 37336051 37336110 -139638030 + (TG)n Simple_repeat Simple_repeat 2 61 0 324 143 0 0 chrX 37336111 37336167 -139637973 + (GA)n Simple_repeat Simple_repeat 2 57 0 334 310 55 21 chrX 37336315 37336460 -139637680 + MIR SINE MIR 12 161 -101 919 159 25 4 chrX 37336671 37336847 -139637293 + MLT1D LTR MaLR 1 150 -355 1531 183 37 86 chrX 37336849 37337417 -139636723 + L1M4 LINE L1 2768 3307 -2839 715 191 33 60 chrX 37337417 37337549 -139636591 + L1MB2 LINE L1 5993 6120 -51 1830 185 0 3 chrX 37337549 37337862 -139636278 + AluJo SINE Alu 1 312 0 715 191 33 60 chrX 37337862 37337912 -139636228 + L1MB2 LINE L1 6120 6170 -1 213 68 27 68 chrX 37338961 37339035 -139635105 + (TTATA)n Simple_repeat Simple_repeat 5 75 0 1995 132 0 14 chrX 37339051 37339338 -139634802 - AluSx SINE Alu -29 283 1 2125 103 3 7 chrX 37339541 37339833 -139634307 + AluSx SINE Alu 22 312 0 1898 159 19 7 chrX 37339871 37340179 -139633961 + AluSx SINE Alu 1 312 0 808 241 68 2 chrX 37340208 37340447 -139633693 + L1ME LINE L1 5353 5610 -517 271 273 39 12 chrX 37340553 37340670 -139633470 + MIR SINE MIR 34 150 -63 2197 93 0 4 chrX 37340738 37341016 -139633124 + AluSq SINE Alu 1 277 -36 527 0 16 0 chrX 37341023 37341086 -139633054 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 1896 133 8 0 chrX 37341096 37341360 -139632780 + AluSx SINE Alu 1 266 -46 225 171 29 14 chrX 37341363 37341433 -139632707 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 234 204 19 0 chrX 37341593 37341647 -139632493 + (TTG)n Simple_repeat Simple_repeat 1 55 0 2111 176 75 45 chrX 37341820 37342287 -139631853 + MER77 LTR ERV1 116 596 -9 27 0 0 0 chrX 37342378 37342405 -139631735 + AT_rich Low_complexity Low_complexity 1 27 0 2284 120 0 0 chrX 37342629 37342928 -139631212 + AluSx SINE Alu 1 299 -13 756 128 8 8 chrX 37342928 37343038 -139631102 - FLAM_C SINE Alu -198 114 2 270 252 71 71 chrX 37343266 37343421 -139630719 - MIR SINE MIR -59 203 49 2200 189 92 15 chrX 37344144 37344600 -139629540 - LTR42 LTR ERVL -2 493 3 298 263 128 64 chrX 37345338 37345541 -139628599 + L1M4 LINE L1 3595 3824 -2322 1523 196 22 0 chrX 37345541 37345817 -139628323 + AluJb SINE Alu 3 284 -28 298 263 128 64 chrX 37345817 37345910 -139628230 + L1M4 LINE L1 3824 3910 -2236 495 264 108 17 chrX 37346054 37346285 -139627855 + L1M4 LINE L1 3918 4169 -1977 642 222 0 0 chrX 37346310 37346436 -139627704 + AluJb SINE Alu 7 132 -180 463 296 94 23 chrX 37346437 37346745 -139627395 + L1M4 LINE L1 4164 4493 -1653 405 0 0 0 chrX 37346856 37346901 -139627239 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1885 105 18 11 chrX 37346903 37347180 -139626960 - AluSg SINE Alu -31 279 1 998 216 5 28 chrX 37347781 37347999 -139626141 + AluSg/x SINE Alu 83 295 -15 1735 171 0 0 chrX 37348657 37348944 -139625196 + AluSx SINE Alu 1 287 -25 696 259 11 0 chrX 37349544 37349718 -139624422 + L1MC4 LINE L1 7503 7678 -364 432 202 0 0 chrX 37349748 37349832 -139624308 + AluS SINE Alu 2 85 -227 1032 136 0 6 chrX 37349832 37350001 -139624139 + AluSc SINE Alu 141 308 -1 448 223 36 62 chrX 37350006 37350199 -139623941 + L1MC4 LINE L1 7706 7893 -149 243 61 0 0 chrX 37350224 37350257 -139623883 + (TG)n Simple_repeat Simple_repeat 1 33 0 336 233 47 19 chrX 37350275 37350382 -139623758 + L1MC4 LINE L1 7783 8019 -23 394 107 0 40 chrX 37350459 37350534 -139623606 - L1MB2 LINE L1 -2 6169 6098 601 233 0 0 chrX 37350609 37350780 -139623360 - FLAM_A SINE Alu 0 171 1 366 107 0 0 chrX 37351879 37351935 -139622205 + (CA)n Simple_repeat Simple_repeat 2 57 0 877 138 12 30 chrX 37352870 37353037 -139621103 - FRAM SINE Alu -2 164 1 22 35 0 0 chrX 37353339 37353368 -139620772 + GC_rich Low_complexity Low_complexity 1 29 0 365 231 25 41 chrX 37354119 37354240 -139619900 + L1MDb LINE L1 1293 1411 -4998 1812 174 44 14 chrX 37354252 37354615 -139619525 + MER41D LTR ERV1 1 374 -183 1474 179 0 49 chrX 37354630 37354915 -139619225 + AluJb SINE Alu 14 284 -28 580 277 110 20 chrX 37354943 37355243 -139618897 + L1M4 LINE L1 3841 4167 -1979 681 168 8 8 chrX 37355265 37355396 -139618744 + AluJb SINE Alu 2 132 -180 377 299 60 63 chrX 37355418 37355560 -139618580 + L1M4 LINE L1 4189 4330 -1816 2165 111 3 0 chrX 37355560 37355866 -139618274 + AluSg1 SINE Alu 3 309 0 377 299 60 63 chrX 37355866 37356024 -139618116 + L1M4 LINE L1 4330 4488 -1658 2979 21 0 0 chrX 37356718 37357055 -139617085 + L1PA2 LINE L1 5612 5948 -207 23 68 0 0 chrX 37407078 37407122 -139567018 + AT_rich Low_complexity Low_complexity 1 44 0 43859 33 21 1 chrX 37408174 37414206 -139559934 + L1PA2 LINE L1 1 6155 0 351 274 75 40 chrX 37414918 37415119 -139559021 - L1ME3A LINE L1 0 6170 5963 402 194 24 48 chrX 37415185 37415309 -139558831 - L1ME3A LINE L1 -225 5945 5825 227 370 111 15 chrX 37417062 37417197 -139556943 - L2 LINE L2 -9 3263 3116 772 33 11 0 chrX 37418235 37418325 -139555815 - L1PA5 LINE L1 -6 6148 6058 258 268 122 0 chrX 37418902 37418984 -139555156 - MER5A DNA MER1_type -7 182 91 865 251 0 23 chrX 37421378 37421593 -139552547 + MIR SINE MIR 4 213 -49 1224 191 23 5 chrX 37421733 37421953 -139552187 - MER58A DNA MER1_type 0 224 1 506 57 143 0 chrX 37422176 37422246 -139551894 + MADE1 DNA Mariner 1 80 0 221 386 53 3 chrX 37422827 37422970 -139551170 + MIR SINE MIR 4 152 -72 252 86 0 0 chrX 37423405 37423440 -139550700 + (TA)n Simple_repeat Simple_repeat 2 36 0 1564 182 45 17 chrX 37424554 37424724 -139549416 - AluJo SINE Alu -13 299 116 180 0 0 0 chrX 37424724 37424744 -139549396 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1564 182 45 17 chrX 37424744 37424864 -139549276 - AluJo SINE Alu -196 116 1 21 71 0 0 chrX 37425423 37425465 -139548675 + AT_rich Low_complexity Low_complexity 1 42 0 258 32 0 0 chrX 37425622 37425653 -139548487 + (GA)n Simple_repeat Simple_repeat 1 31 0 * 324 0 0 0 chrX 37425652 37425688 -139548452 + (TG)n Simple_repeat Simple_repeat 2 37 0 925 94 47 0 chrX 37425732 37425859 -139548281 + AluSx SINE Alu 1 133 -180 207 0 0 0 chrX 37425859 37425882 -139548258 + (A)n Simple_repeat Simple_repeat 1 23 0 1329 89 0 0 chrX 37425907 37426075 -139548065 + AluSx SINE Alu 130 297 -15 1502 160 30 4 chrX 37426102 37426364 -139547776 + AluJo SINE Alu 12 280 -32 1215 181 3 101 chrX 37426385 37426723 -139547417 - L1MD2 LINE L1 -30 6329 6025 2233 42 0 4 chrX 37426853 37427114 -139547026 - AluY SINE Alu -10 301 42 1455 185 59 20 chrX 37427749 37428090 -139546050 + L1MA9 LINE L1 5921 6274 -38 889 274 80 29 chrX 37429910 37430343 -139543797 + L1MC4a LINE L1 5532 5988 -133 2210 126 0 0 chrX 37430343 37430645 -139543495 - AluJb SINE Alu -10 302 1 889 274 80 29 chrX 37430645 37430686 -139543454 + L1MC4a LINE L1 5988 6025 -96 1025 197 83 89 chrX 37431492 37431852 -139542288 + L1MC4 LINE L1 7682 8039 -3 2147 146 52 0 chrX 37432057 37432386 -139541754 - MER7A DNA MER2_type 0 346 3 1846 178 0 6 chrX 37432402 37432716 -139541424 - AluJb SINE Alu 0 312 1 217 286 0 0 chrX 37433355 37433411 -139540729 + CT-rich Low_complexity Low_complexity 1 56 0 396 149 40 0 chrX 37435306 37435380 -139538760 + MER116 DNA Mariner 4 80 0 539 283 115 16 chrX 37436179 37436370 -139537770 + MIR SINE MIR 53 262 0 195 69 0 0 chrX 37437088 37437117 -139537023 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 760 235 121 79 chrX 37437137 37437592 -139536548 + L1ME4a LINE L1 5648 6121 0 1687 196 6 6 chrX 37437636 37437948 -139536192 + AluJb SINE Alu 1 312 0 429 285 22 51 chrX 37439259 37439396 -139534744 - MIR SINE MIR -56 152 20 273 292 83 121 chrX 37439599 37439962 -139534178 - L2 LINE L2 -5 3267 2919 198 0 0 0 chrX 37443959 37443981 -139530159 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2207 108 0 23 chrX 37444342 37444649 -139529491 - AluSc SINE Alu -9 300 1 22 0 0 0 chrX 37445035 37445057 -139529083 + AT_rich Low_complexity Low_complexity 1 22 0 184 303 71 10 chrX 37445414 37445513 -139528627 - L3 LINE CR1 -23 1554 1450 629 258 60 43 chrX 37446863 37447096 -139527044 + MIR SINE MIR 1 237 -25 314 206 272 0 chrX 37448764 37448856 -139525284 + MER94 DNA DNA 3 119 -15 903 159 0 8 chrX 37449340 37449472 -139524668 - FLAM_C SINE Alu -1 132 2 226 248 60 120 chrX 37449788 37449905 -139524235 + MER5A DNA MER1_type 17 126 -63 358 191 12 60 chrX 37449992 37450076 -139524064 + L2 LINE L2 3184 3263 -9 439 338 0 0 chrX 37450275 37450408 -139523732 + MIR SINE MIR 59 191 -71 417 258 0 10 chrX 37450508 37450605 -139523535 - L2 LINE L2 -5 3267 3172 1738 149 4 0 chrX 37450651 37450913 -139523227 - AluJb SINE Alu -19 293 31 180 343 180 12 chrX 37451393 37451565 -139522575 - MIR SINE MIR -50 212 12 696 301 103 32 chrX 37452132 37452296 -139521844 + L2 LINE L2 2676 2827 -486 2925 129 50 5 chrX 37452296 37452738 -139521402 + MLT1C LTR MaLR 5 466 -1 696 301 103 32 chrX 37452738 37453075 -139521065 + L2 LINE L2 2827 3211 -102 937 138 29 29 chrX 37453076 37453250 -139520890 - FRAM SINE Alu -7 169 1 236 277 48 48 chrX 37453256 37453339 -139520801 + L2 LINE L2 3228 3310 -3 268 277 64 21 chrX 37453362 37453456 -139520684 - L2 LINE L2 -6 3266 3169 905 244 28 40 chrX 37453492 37453742 -139520398 + MIR SINE MIR 2 248 -14 605 254 0 23 chrX 37454010 37454140 -139520000 - L2 LINE L2 -1 3312 3186 592 287 45 49 chrX 37454382 37454629 -139519511 - MIR SINE MIR -16 246 1 1496 206 57 7 chrX 37454773 37455069 -139519071 - MLT1E LTR MaLR 0 593 283 296 167 0 0 chrX 37455072 37455120 -139519020 - MLT2D LTR ERVL 0 397 350 252 86 0 0 chrX 37455120 37455155 -139518985 + (TG)n Simple_repeat Simple_repeat 1 35 0 1890 189 27 11 chrX 37455163 37455528 -139518612 - MLT2D LTR ERVL -41 373 3 556 194 0 19 chrX 37455682 37455785 -139518355 - MLT1E LTR MaLR -492 101 1 887 277 93 95 chrX 37455785 37456481 -139517659 - MLT1E-int LTR MaLR 0 1371 677 1145 198 60 8 chrX 37456680 37456932 -139517208 - MLT1E-int LTR MaLR -765 606 342 197 219 0 0 chrX 37456934 37456975 -139517165 + L2 LINE L2 3257 3297 -16 225 299 52 13 chrX 37456998 37457075 -139517065 + MIR SINE MIR 139 218 -44 4350 106 3 54 chrX 37457085 37457728 -139516412 + MER4B LTR ERV1 1 610 0 570 238 88 25 chrX 37457754 37457914 -139516226 + MLT1B LTR MaLR 1 170 -204 1553 149 127 38 chrX 37458012 37458623 -139515517 - LTR8A LTR ERV1 0 727 2 867 241 0 0 chrX 37458624 37458794 -139515346 + MLT1B LTR MaLR 217 386 -4 303 134 0 19 chrX 37458924 37458990 -139515150 + AluJb SINE Alu 1 40 -262 1988 125 119 9 chrX 37458992 37459329 -139514811 - MER51B LTR ERV1 -2 375 2 1754 149 0 4 chrX 37459330 37459591 -139514549 + AluJb SINE Alu 37 296 -16 263 260 40 20 chrX 37459648 37459660 -139514480 - HAL1b LINE L1 -49 1299 1288 293 302 76 23 chrX 37459660 37459832 -139514308 - L1ME4a LINE L1 -73 6048 1198 896 211 22 93 chrX 37460702 37460972 -139513168 + MIR SINE MIR 5 255 -7 1509 163 73 35 chrX 37461018 37461306 -139512834 - AluJb SINE Alu -13 299 1 206 255 266 11 chrX 37461532 37461626 -139512514 + MER5A DNA MER1_type 49 166 -23 * 584 186 20 0 chrX 37461550 37461652 -139512488 - MER5A DNA MER1_type -77 112 9 198 0 0 0 chrX 37461848 37461870 -139512270 + (A)n Simple_repeat Simple_repeat 1 22 0 2902 127 23 26 chrX 37461870 37462475 -139511665 - MER4E LTR ERV1 0 779 2 2701 81 46 44 chrX 37462721 37463289 -139510851 + MER51A LTR ERV1 1 634 0 463 127 28 0 chrX 37463709 37463780 -139510360 + LTR8A LTR ERV1 1 73 -654 1153 119 0 0 chrX 37463783 37463934 -139510206 - AluSx SINE Alu -49 263 113 761 124 19 0 chrX 37463986 37464091 -139510049 - AluSx SINE Alu -205 108 2 1879 213 95 32 chrX 37464092 37464618 -139509522 + LTR8 LTR ERV1 133 691 0 441 273 67 13 chrX 37464701 37464851 -139509289 - MIR SINE MIR 0 262 105 3465 89 13 0 chrX 37465127 37465574 -139508566 - L1PA16 LINE L1 -4 6162 5710 904 293 64 48 chrX 37465995 37466316 -139507824 + L1MC4a LINE L1 5436 5769 -2039 1979 152 0 7 chrX 37466316 37466613 -139507527 + AluJb SINE Alu 1 295 -17 904 293 64 48 chrX 37466613 37466772 -139507368 + L1MC4a LINE L1 5769 5924 -1884 5345 125 34 31 chrX 37467249 37468124 -139506016 - L1MA9 LINE L1 0 6312 5435 4599 150 14 9 chrX 37468124 37468972 -139505168 + L1MA9 LINE L1 4589 5444 -743 3896 208 70 39 chrX 37468971 37469070 -139505070 - L1MD2 LINE L1 -13 6415 6321 * 1773 171 0 20 chrX 37469070 37469363 -139504777 - AluJb SINE Alu -25 287 1 3896 208 70 39 chrX 37469363 37470494 -139503646 - L1MD2 LINE L1 -107 6321 5148 582 288 19 19 chrX 37470495 37470700 -139503440 - L1MD2 LINE L1 -2549 3666 3462 287 261 80 43 chrX 37470701 37470839 -139503301 - L1MD2 LINE L1 -3925 2471 2329 2005 141 0 0 chrX 37470844 37471134 -139503006 - AluJb SINE Alu -22 290 1 3386 209 68 45 chrX 37471160 37471773 -139502367 + L1MDa LINE L1 1262 1912 -4628 2149 93 52 3 chrX 37471773 37472064 -139502076 - L1PA16 LINE L1 -9 6157 5853 3386 209 68 45 chrX 37472064 37472525 -139501615 + L1MDa LINE L1 1912 2361 -4179 832 110 93 0 chrX 37473042 37473160 -139500980 + FLAM_C SINE Alu 1 129 -4 271 327 105 12 chrX 37473288 37473450 -139500690 - MIR SINE MIR -4 258 82 297 311 30 30 chrX 37473537 37473669 -139500471 + L2 LINE L2 2881 3012 -260 295 227 0 40 chrX 37473674 37473749 -139500391 + L2 LINE L2 3201 3272 0 730 200 68 63 chrX 37474516 37474721 -139499419 - MIR SINE MIR 0 262 57 856 124 15 15 chrX 37475411 37475548 -139498592 - FRAM SINE Alu -19 157 21 182 327 0 0 chrX 37475843 37475895 -139498245 + L2 LINE L2 3249 3300 -13 186 43 0 0 chrX 37475895 37475918 -139498222 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 541 257 145 37 chrX 37476217 37476431 -139497709 + MLT1J LTR MaLR 238 474 -37 295 185 19 0 chrX 37476564 37476618 -139497522 - L2 LINE L2 -4 3309 3255 284 0 28 0 chrX 37476968 37477004 -139497136 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 967 92 40 6 chrX 37477007 37477180 -139496960 + CT-rich Low_complexity Low_complexity 2 180 0 1744 158 13 26 chrX 37477182 37477486 -139496654 - AluJb SINE Alu -12 300 1 5936 127 17 6 chrX 37477487 37478367 -139495773 - MER49 LTR ERV1 -33 890 1 1515 222 39 129 chrX 37478402 37478513 -139495627 + Charlie7 DNA MER1_type 43 162 -2450 6373 30 0 0 chrX 37478513 37479213 -139494927 + L1PA4 LINE L1 5456 6155 0 1515 222 39 129 chrX 37479213 37479533 -139494607 + Charlie7 DNA MER1_type 162 380 -2232 2228 106 0 31 chrX 37479533 37479818 -139494322 + AluSp SINE Alu 1 276 -37 303 28 0 0 chrX 37479818 37479854 -139494286 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2228 106 0 31 chrX 37479854 37479889 -139494251 + AluSp SINE Alu 276 311 -2 1515 222 39 129 chrX 37479889 37480207 -139493933 + Charlie7 DNA MER1_type 380 725 -1887 196 320 90 8 chrX 37480347 37480469 -139493671 + L2 LINE L2 2537 2668 -646 275 352 0 0 chrX 37480617 37480688 -139493452 + Charlie1 DNA MER1_type 1 71 -2690 * 1757 147 38 103 chrX 37480686 37480790 -139493350 + Charlie1 DNA MER1_type 2343 2452 -309 2161 130 0 22 chrX 37480790 37481106 -139493034 - AluSx SINE Alu -3 309 1 1757 147 38 103 chrX 37481106 37481270 -139492870 + Charlie1 DNA MER1_type 2452 2573 -188 2245 125 0 0 chrX 37481270 37481575 -139492565 - AluSx SINE Alu -7 305 1 1757 147 38 103 chrX 37481575 37481753 -139492387 + Charlie1 DNA MER1_type 2573 2761 0 196 312 80 43 chrX 37481759 37481897 -139492243 + L2 LINE L2 2766 2908 -406 231 114 0 0 chrX 37481946 37481990 -139492150 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 979 92 0 0 chrX 37481990 37482109 -139492031 - FLAM_C SINE Alu -24 119 1 336 226 39 59 chrX 37482179 37482281 -139491859 - LTR67 LTR ERVL -2 555 456 281 246 231 31 chrX 37482705 37482835 -139491305 - MIR3 SINE MIR -36 172 17 257 184 0 0 chrX 37482933 37482982 -139491158 - L2 LINE L2 -1 3271 3223 271 176 46 23 chrX 37483337 37483419 -139490721 + MIR SINE MIR 108 191 -51 278 173 49 74 chrX 37483429 37483510 -139490630 - LTR67 LTR ERVL -4 553 475 407 306 153 19 chrX 37484382 37484591 -139489549 - MLT1L LTR MaLR -343 272 36 1641 130 183 0 chrX 37484597 37484859 -139489281 + AluSx SINE Alu 1 310 -2 809 206 42 69 chrX 37485209 37485326 -139488814 + MIR SINE MIR 6 125 -137 1866 163 10 0 chrX 37485326 37485621 -139488519 - AluJb SINE Alu -14 298 1 809 206 42 69 chrX 37485621 37485765 -139488375 + MIR SINE MIR 125 260 -2 319 246 44 18 chrX 37485805 37485919 -139488221 + L1ME4a LINE L1 5999 6115 -6 2070 125 7 23 chrX 37486313 37486617 -139487523 + AluSx SINE Alu 1 299 -13 2328 107 0 0 chrX 37486987 37487296 -139486844 - AluSc SINE Alu 0 309 1 1786 154 7 0 chrX 37487685 37487987 -139486153 + AluJb SINE Alu 1 304 0 697 273 60 9 chrX 37489311 37489527 -139484613 + MIR SINE MIR 36 262 0 180 369 73 15 chrX 37489531 37489737 -139484403 + L2 LINE L2 2760 2977 -337 306 0 0 0 chrX 37490207 37490241 -139483899 + (CA)n Simple_repeat Simple_repeat 1 34 0 201 104 42 42 chrX 37490274 37490322 -139483818 + (TTATA)n Simple_repeat Simple_repeat 3 50 0 282 150 68 14 chrX 37490325 37490472 -139483668 + (TATAA)n Simple_repeat Simple_repeat 3 157 0 330 162 29 52 chrX 37490475 37490611 -139483529 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 1318 222 10 113 chrX 37491154 37491641 -139482499 + L2 LINE L2 2473 2909 -405 483 213 37 0 chrX 37491645 37491753 -139482387 + MER20B DNA MER1_type 657 768 -15 2652 192 6 64 chrX 37491928 37491941 -139482199 + MLT1F LTR MaLR 1 13 -529 2427 104 150 5 chrX 37491941 37492315 -139481825 - MSTA LTR MaLR 0 428 1 2652 192 6 64 chrX 37492315 37492797 -139481343 + MLT1F LTR MaLR 13 464 -78 1201 172 72 79 chrX 37492797 37493087 -139481053 - AluJo SINE Alu -24 288 1 2652 192 6 64 chrX 37493087 37493138 -139481002 + MLT1F LTR MaLR 464 516 -26 518 208 85 39 chrX 37493180 37493310 -139480830 + L2 LINE L2 3178 3313 0 1145 313 50 39 chrX 37493322 37493923 -139480217 + L1M4 LINE L1 4164 4780 -1366 2328 87 3 32 chrX 37493923 37494234 -139479906 + AluSq SINE Alu 1 302 -11 1145 313 50 39 chrX 37494234 37494516 -139479624 + L1M4 LINE L1 4780 5057 -1089 343 109 0 0 chrX 37494669 37494724 -139479416 - Alu SINE Alu -2 300 246 2149 116 3 7 chrX 37494757 37495060 -139479080 + AluSq SINE Alu 1 302 -11 1807 170 3 3 chrX 37495147 37495459 -139478681 - AluJb SINE Alu 0 312 1 579 101 0 0 chrX 37495561 37495640 -139478500 - L1MC1 LINE L1 0 6333 6255 306 284 108 34 chrX 37495753 37495929 -139478211 + L1M4b LINE L1 11 199 -6660 1578 224 60 69 chrX 37495932 37496573 -139477567 + L1M4b LINE L1 798 1411 -5448 2345 95 0 0 chrX 37496573 37496877 -139477263 + AluSq SINE Alu 1 304 -9 1578 224 60 69 chrX 37496877 37497087 -139477053 + L1M4b LINE L1 1411 1621 -5238 24 0 0 0 chrX 37497087 37497111 -139477029 + AT_rich Low_complexity Low_complexity 1 24 0 1936 36 0 0 chrX 37497111 37497330 -139476810 + L1PA5 LINE L1 5932 6150 -4 193 75 50 0 chrX 37497357 37497397 -139476743 + (TA)n Simple_repeat Simple_repeat 1 42 0 21 89 0 0 chrX 37497425 37497481 -139476659 + AT_rich Low_complexity Low_complexity 1 56 0 34 89 0 0 chrX 37497530 37497620 -139476520 + AT_rich Low_complexity Low_complexity 1 90 0 579 257 28 17 chrX 37497733 37497878 -139476262 - L1M4b LINE L1 -5435 1424 1275 3154 85 27 38 chrX 37497878 37498327 -139475813 + MLT2A1 LTR ERVL 1 444 0 579 257 28 17 chrX 37498327 37498360 -139475780 - L1M4b LINE L1 -5584 1275 1244 503 229 8 0 chrX 37498544 37498662 -139475478 + L1M4b LINE L1 1633 1751 -5104 1437 105 0 0 chrX 37498666 37498847 -139475293 + AluSq SINE Alu 1 181 -132 1884 233 58 41 chrX 37498927 37499460 -139474680 + MLT1E1 LTR MaLR 1 542 -112 1846 183 14 17 chrX 37499464 37499831 -139474309 + MLT1A1 LTR MaLR 5 365 0 412 134 30 0 chrX 37499831 37499897 -139474243 + MLT1E3 LTR MaLR 477 544 -49 1089 33 0 0 chrX 37499904 37500026 -139474114 - L1PA4 LINE L1 -8 6147 6026 484 62 15 0 chrX 37500058 37500123 -139474017 + MLT1E3 LTR MaLR 559 624 0 258 212 0 76 chrX 37500217 37500283 -139473857 + MER102b DNA MER1_type 27 87 -254 569 141 10 20 chrX 37500283 37500382 -139473758 + AluJo SINE Alu 39 136 -176 688 294 71 4 chrX 37500388 37500626 -139473514 + MER102b DNA MER1_type 88 341 0 3124 203 48 73 chrX 37501150 37501983 -139472157 - MER21B LTR ERV1 -51 812 1 2152 217 69 50 chrX 37502056 37502734 -139471406 - LTR8 LTR ERV1 0 691 1 507 241 153 39 chrX 37503334 37503377 -139470763 + L1MC/D LINE L1 5269 5306 -2502 2793 146 11 16 chrX 37503377 37503822 -139470318 - LTR47B LTR ERVL 0 443 1 507 241 153 39 chrX 37503822 37504060 -139470080 + L1MC/D LINE L1 5306 5582 -2226 644 268 52 11 chrX 37504771 37505109 -139469031 + MLT1K LTR MaLR 190 588 0 351 296 148 34 chrX 37505223 37505635 -139468505 + LTR67 LTR ERVL 99 557 0 1874 124 51 0 chrX 37505690 37505965 -139468175 - AluJb SINE Alu -15 297 9 483 105 22 21 chrX 37506591 37506680 -139467460 - MLT1B LTR MaLR -1 614 312 240 342 165 34 chrX 37506769 37507006 -139467134 - L2 LINE L2 -2 3270 3003 803 138 32 16 chrX 37507269 37507392 -139466748 + AluJb SINE Alu 2 126 -186 424 238 48 24 chrX 37507424 37507550 -139466590 - L1ME3A LINE L1 -15 6155 6027 307 222 42 14 chrX 37507572 37507644 -139466496 - MER81 DNA DNA -15 99 26 2486 138 5 42 chrX 37508032 37508437 -139465703 - MLT1B LTR MaLR 0 390 1 1240 160 11 80 chrX 37508463 37508725 -139465415 + AluJb SINE Alu 50 293 -19 486 290 34 11 chrX 37509660 37509836 -139464304 + MIR SINE MIR 25 204 -58 2827 257 40 122 chrX 37509958 37510509 -139463631 + L2 LINE L2 1300 1895 -1419 2292 38 0 11 chrX 37510509 37510775 -139463365 - L1PA5 LINE L1 -5 6149 5887 543 94 0 24 chrX 37510775 37510860 -139463280 + L1P LINE L1 4957 5039 -1107 2827 257 40 122 chrX 37510860 37511626 -139462514 + L2 LINE L2 1893 2587 -727 327 78 0 0 chrX 37511671 37511722 -139462418 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 383 0 21 0 chrX 37511723 37511770 -139462370 + (TG)n Simple_repeat Simple_repeat 1 48 0 395 246 82 0 chrX 37511879 37511989 -139462151 + MIR SINE MIR 123 241 -21 803 199 71 103 chrX 37513220 37513501 -139460639 - L2 LINE L2 0 3313 3042 254 234 91 0 chrX 37513486 37513563 -139460577 - L2 LINE L2 -345 2927 2844 * 3833 194 70 56 chrX 37513595 37513669 -139460471 - L1MC5 LINE L1 -236 7725 7653 2303 98 0 7 chrX 37513669 37513966 -139460174 + AluSq SINE Alu 3 297 -16 3833 194 70 56 chrX 37513966 37514991 -139459149 - L1MC5 LINE L1 -308 7653 6611 877 232 97 4 chrX 37515067 37515304 -139458836 - L2 LINE L2 -600 2714 2456 549 30 0 0 chrX 37516417 37516484 -139457656 + (TC)n Simple_repeat Simple_repeat 2 68 0 306 0 0 0 chrX 37516486 37516520 -139457620 + (CA)n Simple_repeat Simple_repeat 1 34 0 238 293 159 39 chrX 37516809 37517005 -139457135 - MIR SINE MIR -29 233 9 918 201 112 0 chrX 37517005 37517174 -139456966 + MER5A DNA MER1_type 2 189 0 238 293 159 39 chrX 37517174 37517185 -139456955 - MIR SINE MIR -253 9 1 447 312 40 0 chrX 37517600 37517725 -139456415 - L2 LINE L2 -2 3270 3141 318 274 39 39 chrX 37518135 37518237 -139455903 - L2 LINE L2 -28 3244 3143 244 330 47 47 chrX 37518305 37518411 -139455729 - L2 LINE L2 -30 3242 3137 309 373 10 0 chrX 37518954 37519056 -139455084 - L2 LINE L2 -36 3236 3134 296 117 52 26 chrX 37519197 37519274 -139454866 + CT-rich Low_complexity Low_complexity 2 80 0 1932 169 0 6 chrX 37519274 37519588 -139454552 - AluJo SINE Alu 0 312 1 299 308 23 38 chrX 37519837 37519970 -139454170 - L2 LINE L2 -1 3312 3182 306 313 127 0 chrX 37520300 37520434 -139453706 - L2 LINE L2 -5 3308 3158 902 196 92 0 chrX 37521733 37521906 -139452234 + MER5A DNA MER1_type 1 189 0 284 102 20 0 chrX 37522202 37522251 -139451889 + (TC)n Simple_repeat Simple_repeat 1 50 0 212 302 135 0 chrX 37522415 37522511 -139451629 - L2 LINE L2 -20 3252 3144 210 289 0 13 chrX 37522885 37522961 -139451179 + (TTCA)n Simple_repeat Simple_repeat 1 75 0 226 337 12 48 chrX 37523352 37523435 -139450705 - L2 LINE L2 -22 3250 3171 192 300 50 25 chrX 37524139 37524219 -139449921 - L2 LINE L2 -18 3295 3214 192 135 0 0 chrX 37524616 37524653 -139449487 + (TC)n Simple_repeat Simple_repeat 1 37 0 1076 122 24 0 chrX 37525115 37525279 -139448861 + MER5A DNA MER1_type 22 189 0 800 145 118 21 chrX 37525398 37525584 -139448556 - L1MC2 LINE L1 -2 6342 6139 2297 204 34 19 chrX 37525587 37528356 -139445784 - L1MC2 LINE L1 -148 6476 3559 467 172 35 11 chrX 37528356 37528443 -139445697 - L1MA5A LINE L1 -5 6292 6204 202 200 0 0 chrX 37528480 37528520 -139445620 + CT-rich Low_complexity Low_complexity 2 41 0 44001 29 22 1 chrX 37528520 37534549 -139439591 - L1HS LINE L1 0 6155 1 322 301 0 31 chrX 37534608 37534782 -139439358 + CT-rich Low_complexity Low_complexity 1 280 0 3957 217 22 5 chrX 37534832 37535780 -139438360 - L1MC2 LINE L1 -2904 3522 2559 4944 164 68 150 chrX 37535785 37536046 -139438094 - L1MC2 LINE L1 -4871 1555 1274 2214 114 0 16 chrX 37536046 37536361 -139437779 - AluSg SINE Alu 0 310 1 4944 164 68 150 chrX 37536361 37537788 -139436352 - L1MC2 LINE L1 -5152 1274 6 3702 26 22 0 chrX 37538205 37538621 -139435519 - L1PA4 LINE L1 -1 6154 5730 3363 23 3 5 chrX 37538621 37539010 -139435130 + L1PA4 LINE L1 5336 5723 -432 253 271 73 28 chrX 37539139 37539316 -139434824 - L1M4 LINE L1 -1488 4658 4474 335 304 144 11 chrX 37539368 37539638 -139434502 - L1M4 LINE L1 -1753 4393 4088 444 303 35 20 chrX 37539778 37540032 -139434108 - L1M4 LINE L1 -2230 3916 3659 775 227 91 36 chrX 37540479 37540699 -139433441 + Charlie1 DNA MER1_type 7 2476 -285 8218 22 0 0 chrX 37540767 37542158 -139431982 - L1PA3 LINE L1 -5 6150 4760 5733 23 0 0 chrX 37542158 37542810 -139431330 + L1PA3 LINE L1 4087 4738 -1408 664 156 16 8 chrX 37542811 37542933 -139431207 + Charlie1 DNA MER1_type 2639 2761 0 229 258 258 0 chrX 37543232 37543325 -139430815 - L2 LINE L2 -19 3253 3137 211 346 38 38 chrX 37544748 37544881 -139429259 - L2 LINE L2 -462 2852 2720 1554 227 89 23 chrX 37546728 37547247 -139426893 + L1MC4 LINE L1 6501 7053 -989 21 36 0 0 chrX 37547247 37547275 -139426865 + AT_rich Low_complexity Low_complexity 1 28 0 1270 251 6 9 chrX 37547297 37547644 -139426496 + L1MC4 LINE L1 7234 7579 -463 2356 185 69 63 chrX 37547682 37548040 -139426100 - MER99 DNA DNA -6 822 457 1780 154 0 49 chrX 37548040 37548346 -139425794 + AluJb SINE Alu 1 291 -21 2356 185 69 63 chrX 37548346 37548610 -139425530 - MER99 DNA DNA -371 457 196 2474 83 0 0 chrX 37548734 37549036 -139425104 - AluSx SINE Alu -10 302 1 469 216 67 8 chrX 37549154 37549288 -139424852 - LTR16A1 LTR ERVL 0 457 316 864 64 24 0 chrX 37549586 37549711 -139424429 - L1MA6 LINE L1 0 6300 6173 6052 160 106 48 chrX 37549754 37551248 -139422892 + THE1C-int LTR MaLR 1 1580 0 1684 140 49 83 chrX 37551250 37551636 -139422504 + THE1C LTR MaLR 3 375 0 642 234 21 21 chrX 37551637 37551825 -139422315 - L1M4 LINE L1 -1511 4635 4448 974 232 75 15 chrX 37552419 37552686 -139421454 + L1MEc LINE L1 20 302 -6094 719 182 176 0 chrX 37552691 37552786 -139421354 + L1MA9 LINE L1 6048 6125 -187 234 0 0 0 chrX 37552786 37552812 -139421328 + (CA)n Simple_repeat Simple_repeat 2 27 0 719 182 176 0 chrX 37552812 37552892 -139421248 + L1MA9 LINE L1 6125 6254 -58 236 212 24 47 chrX 37552961 37553013 -139421127 + A-rich Low_complexity Low_complexity 2 53 -31 448 116 0 0 chrX 37553013 37553082 -139421058 + L1MA9 LINE L1 6239 6307 -5 236 212 24 47 chrX 37553082 37553114 -139421026 + A-rich Low_complexity Low_complexity 53 84 0 472 287 27 0 chrX 37553180 37553403 -139420737 + L1MEc LINE L1 378 656 -5740 2961 158 52 32 chrX 37553403 37554080 -139420060 - MER67C LTR ERV1 0 710 21 2802 245 60 35 chrX 37554093 37555246 -139418894 + L1MEc LINE L1 653 1834 -4562 2243 68 51 3 chrX 37555287 37555579 -139418561 - AluSg SINE Alu -4 306 1 6819 236 39 35 chrX 37555900 37556028 -139418112 + L1M4 LINE L1 2900 3026 -3120 5338 45 0 5 chrX 37556028 37556678 -139417462 - L1PA6 LINE L1 -2 6152 5506 6819 236 39 35 chrX 37556678 37558645 -139415495 + L1M4 LINE L1 3026 5010 -1136 2308 93 3 16 chrX 37558645 37558981 -139415159 + AluSp SINE Alu 1 313 0 6819 236 39 35 chrX 37558981 37559293 -139414847 + L1M4 LINE L1 5010 5319 -827 258 116 0 0 chrX 37559357 37559400 -139414740 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 460 258 131 25 chrX 37559461 37559821 -139414319 + L1M4 LINE L1 3633 4030 -2116 409 286 95 16 chrX 37559824 37560128 -139414012 + L1M4 LINE L1 4102 4429 -1717 1890 234 56 30 chrX 37560206 37560978 -139413162 - L2 LINE L2 -5 3308 2502 977 137 86 15 chrX 37560979 37561176 -139412964 + MER2 DNA MER2_type 1 211 -134 1331 261 18 9 chrX 37561262 37561588 -139412552 - L2 LINE L2 -858 2456 2128 2267 236 282 96 chrX 37561961 37562228 -139411912 + L2 LINE L2 8 224 -3090 283 283 115 0 chrX 37562228 37562341 -139411799 - MER94 DNA DNA -7 127 2 2267 236 282 96 chrX 37562341 37563498 -139410642 + L2 LINE L2 224 1829 -1485 1334 204 36 4 chrX 37563498 37563969 -139410171 - L1MD2 LINE L1 -10 6349 5815 258 158 0 35 chrX 37564838 37564895 -139409245 - L1MD2 LINE L1 -2419 5623 5569 1707 111 4 4 chrX 37564899 37565134 -139409006 + AluSg/x SINE Alu 76 310 -2 3445 246 98 29 chrX 37565157 37566502 -139407638 - L2 LINE L2 -67 3246 1823 715 193 78 6 chrX 37566503 37566669 -139407471 + L1MDa LINE L1 9 186 -6354 2549 207 67 41 chrX 37566670 37567531 -139406609 + L1MDa LINE L1 660 1687 -4853 201 208 0 83 chrX 37567540 37567588 -139406552 + L2 LINE L2 3252 3295 -18 27 0 0 0 chrX 37567675 37567702 -139406438 + AT_rich Low_complexity Low_complexity 1 27 0 540 226 0 90 chrX 37567920 37568097 -139406043 - L2 LINE L2 -437 2877 2717 267 317 25 56 chrX 37568643 37568804 -139405336 + MIR SINE MIR 55 210 -52 1034 224 110 0 chrX 37568897 37569187 -139404953 + MER5C DNA MER1_type 3 324 0 2230 107 0 10 chrX 37569478 37569776 -139404364 - AluSx SINE Alu -17 295 1 995 251 77 40 chrX 37569969 37569989 -139404151 - L1MC4a LINE L1 -1961 5847 5829 1793 193 7 0 chrX 37569989 37570289 -139403851 - AluJo SINE Alu -10 302 1 995 251 77 40 chrX 37570289 37570615 -139403525 - L1MC4a LINE L1 -1979 5829 5516 243 88 0 0 chrX 37570615 37570649 -139403491 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1959 134 0 0 chrX 37570655 37570930 -139403210 - AluSx SINE Alu -37 275 1 995 251 77 40 chrX 37570930 37571045 -139403095 - L1MC4a LINE L1 -2296 5512 5361 265 236 0 18 chrX 37571248 37571303 -139402837 + L2 LINE L2 3202 3255 -17 630 215 230 20 chrX 37571995 37572195 -139401945 - MIR SINE MIR 0 262 21 2190 86 18 0 chrX 37572646 37572925 -139401215 - AluSq SINE Alu -29 284 1 253 352 72 53 chrX 37573064 37573328 -139400812 + L2 LINE L2 2696 2964 -350 3600 149 52 2 chrX 37573449 37574086 -139400054 + LTR65 LTR ERV1 1 669 0 390 255 0 41 chrX 37574188 37574286 -139399854 + MIR SINE MIR 50 143 -65 363 295 108 8 chrX 37574308 37574437 -139399703 + MIR SINE MIR 21 162 -100 586 228 74 12 chrX 37574521 37574683 -139399457 + MIR SINE MIR 73 244 -18 2073 58 48 65 chrX 37576608 37576918 -139397222 - AluSx SINE Alu -7 305 1 233 239 149 37 chrX 37577061 37577195 -139396945 - L1ME4a LINE L1 -8 6113 5965 604 294 218 18 chrX 37579118 37579553 -139394587 - L2 LINE L2 -470 2844 2323 629 219 56 124 chrX 37579990 37580107 -139394033 + MIR SINE MIR 46 141 -121 4246 110 14 1 chrX 37580107 37580760 -139393380 + L1MA4 LINE L1 5629 6289 -11 629 219 56 124 chrX 37580760 37580875 -139393265 + MIR SINE MIR 141 262 0 402 263 144 38 chrX 37581066 37581107 -139393033 - MIR3 SINE MIR -14 194 159 2455 50 0 0 chrX 37581107 37581404 -139392736 + AluY SINE Alu 1 297 -14 402 263 144 38 chrX 37581404 37581522 -139392618 - MIR3 SINE MIR -49 159 18 377 333 16 24 chrX 37581866 37581989 -139392151 - L2 LINE L2 -1 3271 3150 307 270 90 11 chrX 37582110 37582199 -139391941 - MER5B DNA MER1_type -23 155 60 897 261 161 40 chrX 37582493 37583015 -139391125 + L1ME4a LINE L1 5291 5875 -246 1248 199 21 8 chrX 37583070 37583306 -139390834 + MER8 DNA MER2_type 1 239 0 572 265 41 7 chrX 37583309 37583451 -139390689 + MIR SINE MIR 18 164 -98 718 203 55 6 chrX 37583451 37583614 -139390526 + MER5B DNA MER1_type 2 172 -6 253 211 224 0 chrX 37583634 37583710 -139390430 + MIR SINE MIR 170 262 0 307 210 120 0 chrX 37583966 37584066 -139390074 + L1ME4a LINE L1 5711 5822 -299 1583 135 22 94 chrX 37584071 37584390 -139389750 + AluJo SINE Alu 1 296 -16 1772 164 0 0 chrX 37584403 37584677 -139389463 - AluJb SINE Alu -36 276 3 317 216 58 14 chrX 37584773 37584912 -139389228 + L1ME4a LINE L1 5976 6120 -1 33 25 0 0 chrX 37585690 37585730 -139388410 + AT_rich Low_complexity Low_complexity 1 40 0 237 320 150 10 chrX 37585907 37586007 -139388133 + MIR SINE MIR 22 135 -127 918 150 47 52 chrX 37586008 37586221 -139387919 + MIR SINE MIR 16 227 -35 472 246 53 86 chrX 37586376 37586563 -139387577 - MIR3 SINE MIR -25 183 3 816 302 81 36 chrX 37587836 37588350 -139385790 - L2 LINE L2 -3 3310 2773 284 310 0 23 chrX 37588413 37588500 -139385640 + L2 LINE L2 3186 3270 -2 196 263 26 53 chrX 37588491 37588567 -139385573 + MIR SINE MIR 139 212 -50 * 759 188 51 7 chrX 37589403 37589541 -139384599 + FRAM SINE Alu 1 138 -38 296 265 17 17 chrX 37589543 37589660 -139384480 + L1MC4a LINE L1 5821 5937 -1871 7040 31 3 1 chrX 37590653 37592245 -139381895 + L1PA5 LINE L1 4542 6134 -20 193 269 0 0 chrX 37592438 37592490 -139381650 + L2 LINE L2 2706 2757 -557 339 236 264 0 chrX 37592522 37592632 -139381508 + MIR SINE MIR 32 170 -92 239 133 0 22 chrX 37592683 37592728 -139381412 - MER94 DNA DNA -85 49 6 184 236 109 0 chrX 37592732 37592787 -139381353 + MIR SINE MIR 168 228 -34 206 335 127 32 chrX 37592868 37593089 -139381051 + L2 LINE L2 2996 3237 -35 549 256 218 19 chrX 37593334 37593508 -139380632 + MIR SINE MIR 10 234 -28 2026 123 21 0 chrX 37593508 37593792 -139380348 + AluSx SINE Alu 1 290 -22 549 256 218 19 chrX 37593792 37593828 -139380312 + MIR SINE MIR 234 262 0 207 0 0 0 chrX 37594384 37594407 -139379733 + (T)n Simple_repeat Simple_repeat 1 23 0 14097 29 2 1 chrX 37594876 37597326 -139376814 - L1PA5 LINE L1 -8 6146 3695 215 373 79 16 chrX 37597635 37597761 -139376379 - L3 LINE CR1 -512 1065 932 601 152 0 0 chrX 37597815 37597907 -139376233 - U6 snRNA snRNA -15 92 1 1874 109 20 59 chrX 37597914 37598217 -139375923 - AluSc SINE Alu -18 291 1 2143 113 3 3 chrX 37598227 37598520 -139375620 - AluSx SINE Alu -19 293 1 2191 221 78 28 chrX 37598670 37599235 -139374905 - MLT1E LTR MaLR 0 593 1 2307 95 23 0 chrX 37599281 37599585 -139374555 - AluSp SINE Alu -2 311 1 394 309 62 12 chrX 37599606 37599768 -139374372 - L3 LINE CR1 -1004 573 404 345 253 202 15 chrX 37599785 37599983 -139374157 - L2 LINE L2 -953 2361 2127 199 240 67 13 chrX 37599983 37600058 -139374082 - L3 LINE CR1 -1137 440 362 226 231 48 115 chrX 37600264 37600368 -139373772 + MIR3 SINE MIR 99 195 -13 211 338 108 19 chrX 37600409 37600622 -139373518 + L2 LINE L2 1977 2208 -1106 309 223 81 81 chrX 37600633 37600781 -139373359 - L1ME4a LINE L1 0 6121 5974 1352 154 19 0 chrX 37601600 37601814 -139372326 + MER20 DNA MER1_type 2 219 0 295 374 0 41 chrX 37602188 37602311 -139371829 - MIR3 SINE MIR -81 127 10 611 238 116 0 chrX 37602860 37603032 -139371108 - MIR SINE MIR -1 261 70 1160 132 17 101 chrX 37603035 37603172 -139370968 + MER33 DNA MER1_type 61 163 -2422 1705 121 24 91 chrX 37603172 37603545 -139370595 - L1MA3 LINE L1 0 6305 5958 1160 132 17 101 chrX 37603545 37603695 -139370445 + MER33 DNA MER1_type 163 324 0 233 303 39 122 chrX 37603924 37604178 -139369962 - L2 LINE L2 -48 3224 2992 21 0 0 0 chrX 37605183 37605204 -139368936 + AT_rich Low_complexity Low_complexity 1 21 0 2385 67 14 3 chrX 37605353 37605650 -139368490 - AluSp SINE Alu -13 300 1 1812 197 0 0 chrX 37605760 37606070 -139368070 - AluJo SINE Alu -2 310 1 542 267 26 10 chrX 37606086 37606281 -139367859 - L1ME4a LINE L1 -320 5801 5604 22 35 0 0 chrX 37606464 37606493 -139367647 + AT_rich Low_complexity Low_complexity 1 29 0 938 268 53 38 chrX 37606643 37606707 -139367433 + MER115 DNA AcHobo 93 155 -538 1417 103 75 0 chrX 37606707 37606921 -139367219 - MER30 DNA MER1_type 0 230 1 938 268 53 38 chrX 37606921 37607195 -139366945 + MER115 DNA AcHobo 155 436 -257 265 264 0 0 chrX 37607201 37607254 -139366886 + Zaphod DNA AcHobo 3978 4030 -1 315 256 73 0 chrX 37607363 37607445 -139366695 - MIR SINE MIR -58 150 63 282 261 0 76 chrX 37607482 37607574 -139366566 + MIR SINE MIR 38 122 -86 747 232 50 6 chrX 37608745 37608926 -139365214 + MIR SINE MIR 23 211 -51 354 243 162 15 chrX 37608965 37609101 -139365039 - L3 LINE CR1 -165 1412 1257 669 337 61 76 chrX 37609242 37609481 -139364659 - L3 LINE CR1 -351 1226 985 2355 90 0 3 chrX 37609481 37609781 -139364359 + AluSx SINE Alu 1 299 -13 669 337 61 76 chrX 37609781 37610214 -139363926 - L3 LINE CR1 -592 985 564 1538 203 50 87 chrX 37610232 37610795 -139363345 - L1MD2 LINE L1 -15 6344 5803 609 367 94 50 chrX 37611989 37613473 -139360667 + L2 LINE L2 366 1913 -1401 594 315 34 21 chrX 37613768 37614006 -139360134 - MIR SINE MIR -16 246 6 394 220 37 0 chrX 37614744 37614853 -139359287 + LTR65 LTR ERV1 58 170 -499 390 274 56 13 chrX 37614983 37615178 -139358962 + LTR65 LTR ERV1 403 663 -6 216 250 0 0 chrX 37616506 37616554 -139357586 - L2 LINE L2 -5 3308 3261 22 35 0 0 chrX 37616782 37616811 -139357329 + AT_rich Low_complexity Low_complexity 1 29 0 895 261 29 1 chrX 37616817 37617039 -139357101 - MIR SINE MIR -28 234 9 28 0 0 0 chrX 37617201 37617229 -139356911 + AT_rich Low_complexity Low_complexity 1 28 0 208 87 22 65 chrX 37617233 37617279 -139356861 - MIR SINE MIR -13 249 206 3626 233 75 13 chrX 37617747 37619095 -139355045 - L1M4 LINE L1 -1643 4503 3072 * 7604 0 0 0 chrX 37619081 37619963 -139354177 - L1HS LINE L1 0 6155 5274 * 11955 22 0 1 chrX 37619961 37621431 -139352709 + L1HS LINE L1 3820 5288 -858 2805 224 46 25 chrX 37621433 37621535 -139352605 - L1M4 LINE L1 -3004 3142 3044 2318 126 0 0 chrX 37621535 37621844 -139352296 - AluSx SINE Alu -3 309 1 2805 224 46 25 chrX 37621844 37622715 -139351425 - L1M4 LINE L1 -3102 3044 2148 3579 142 43 31 chrX 37622721 37623402 -139350738 - L1MB8 LINE L1 -9 6980 6292 1966 205 63 11 chrX 37623402 37623680 -139350460 - L1MB8 LINE L1 -1627 5330 5068 485 100 11 0 chrX 37623680 37623770 -139350370 + (TA)n Simple_repeat Simple_repeat 1 91 0 1966 205 63 11 chrX 37623770 37624048 -139350092 - L1MB8 LINE L1 -1889 5068 4745 899 242 78 17 chrX 37624114 37624407 -139349733 - L1MB8 LINE L1 -6536 323 13 864 202 50 57 chrX 37624443 37624579 -139349561 - L1MC4 LINE L1 -4 8038 7903 414 0 0 0 chrX 37624579 37624625 -139349515 + (TG)n Simple_repeat Simple_repeat 2 47 0 864 202 50 57 chrX 37624625 37624770 -139349370 - L1MC4 LINE L1 -139 7903 7759 359 287 85 58 chrX 37624960 37625148 -139348992 - MIR SINE MIR -50 212 20 1340 41 41 0 chrX 37625831 37626001 -139348139 - L1PA4 LINE L1 -3 6152 5976 529 119 0 0 chrX 37626006 37626090 -139348050 - L1MB8 LINE L1 0 6178 6095 458 190 7 36 chrX 37626090 37626235 -139347905 + Tigger5 DNA MER2_type 1 194 -2129 * 508 123 0 12 chrX 37626232 37626313 -139347827 + Tigger5 DNA MER2_type 2244 2323 0 2026 148 71 0 chrX 37626320 37626438 -139347702 - L1MB7 LINE L1 -118 6066 5949 375 271 64 51 chrX 37626438 37626752 -139347388 - L1ME4a LINE L1 -187 5934 5617 522 266 68 13 chrX 37626969 37627147 -139346993 - MIR SINE MIR -68 140 1 271 211 11 142 chrX 37627204 37627394 -139346746 - L2 LINE L2 -819 2495 2331 454 294 61 50 chrX 37627400 37627580 -139346560 - L2 LINE L2 -4 3268 3087 1007 66 22 7 chrX 37627587 37627724 -139346416 + MER85 DNA T2_type 1 139 0 225 333 303 4 chrX 37627996 37628230 -139345910 + L2 LINE L2 2934 3237 -35 864 192 111 15 chrX 37628354 37628552 -139345588 + MER20 DNA MER1_type 3 219 0 852 176 74 6 chrX 37628585 37628761 -139345379 + MER5A DNA MER1_type 1 188 -1 367 292 0 18 chrX 37629876 37629989 -139344151 - MIR SINE MIR -120 142 32 293 319 3 12 chrX 37630427 37630520 -139343620 + MIR SINE MIR 29 118 -90 422 288 158 54 chrX 37630523 37630614 -139343526 + MIR SINE MIR 2 82 -180 1006 179 0 17 chrX 37630614 37630793 -139343347 + MER45A DNA AcHobo 1 176 -2 422 288 158 54 chrX 37630793 37630923 -139343217 + MIR SINE MIR 82 246 -16 296 280 0 13 chrX 37630934 37631009 -139343131 + MIR3 SINE MIR 107 180 -28 811 187 17 62 chrX 37632096 37632385 -139341755 - L1MA8 LINE L1 -6 6285 6010 2171 107 47 0 chrX 37633637 37633935 -139340205 + AluSx SINE Alu 1 312 0 543 302 39 17 chrX 37634240 37634419 -139339721 - MIR SINE MIR 0 262 80 2263 100 10 0 chrX 37634755 37635055 -139339085 + AluY SINE Alu 1 303 -8 8016 29 3 0 chrX 37635055 37636059 -139338081 - L1PA3 LINE L1 -1817 4329 3323 8968 35 0 0 chrX 37636059 37637936 -139336204 + L1PA3 LINE L1 4302 6178 0 396 0 0 0 chrX 37638077 37638121 -139336019 + (TG)n Simple_repeat Simple_repeat 1 44 0 2240 133 54 3 chrX 37638663 37639031 -139335109 - MSTC LTR MaLR 0 428 42 1865 138 92 14 chrX 37639074 37639422 -139334718 + THE1C LTR MaLR 1 375 0 660 284 147 21 chrX 37639447 37639732 -139334408 - L2 LINE L2 -6 3307 2987 * 1249 265 46 33 chrX 37639729 37639999 -139334141 + L2 LINE L2 2916 3194 -119 1045 210 33 9 chrX 37639999 37640026 -139334114 + MER58A DNA MER1_type 5 30 -2390 2169 141 0 0 chrX 37640026 37640332 -139333808 - AluSx SINE Alu -6 306 1 1045 210 33 9 chrX 37640332 37640518 -139333622 + MER58A DNA MER1_type 30 223 -1 1249 265 46 33 chrX 37640518 37640640 -139333500 + L2 LINE L2 3194 3313 0 666 280 42 17 chrX 37640975 37641214 -139332926 + MIR SINE MIR 15 259 -3 496 252 52 19 chrX 37641287 37641442 -139332698 + MER77 LTR ERV1 53 212 -393 1269 242 75 35 chrX 37641521 37641954 -139332186 + MER77 LTR ERV1 175 599 -6 3656 74 9 17 chrX 37642338 37642624 -139331516 - L1PA8A LINE L1 -365 5766 5479 2327 85 0 0 chrX 37642624 37642952 -139331188 - AluSq SINE Alu 0 328 1 3656 74 9 17 chrX 37642952 37643382 -139330758 - L1PA8A LINE L1 -652 5479 5058 2713 84 38 5 chrX 37643383 37643775 -139330365 + L1PA8 LINE L1 5768 6172 0 327 224 0 26 chrX 37643990 37644066 -139330074 - L2 LINE L2 -2 3270 3197 2293 100 42 31 chrX 37646909 37647269 -139326871 - THE1B LTR MaLR 0 364 1 2261 103 0 20 chrX 37651077 37651378 -139322762 + AluSg SINE Alu 1 295 -15 294 209 17 3 chrX 37654808 37654903 -139319237 + L1ME LINE L1 62 157 -5913 329 296 19 19 chrX 37655042 37655150 -139318990 + L1ME LINE L1 383 490 -5580 393 278 70 61 chrX 37655163 37655393 -139318747 + L1ME LINE L1 405 636 -5434 277 250 0 0 chrX 37655389 37655469 -139318671 + L1MA9 LINE L1 6195 6274 -38 * 2150 229 137 47 chrX 37655549 37655792 -139318348 + L1ME LINE L1 651 871 -5209 2052 100 4 4 chrX 37655792 37656063 -139318077 + AluSg SINE Alu 3 273 -37 188 33 0 33 chrX 37656069 37656099 -139318041 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2150 229 137 47 chrX 37656099 37656932 -139317208 + L1ME LINE L1 875 1831 -4249 290 196 0 0 chrX 37656931 37656982 -139317158 + L1MEc LINE L1 35 85 -6311 * 1649 253 68 0 chrX 37656987 37657500 -139316640 + L1MEc LINE L1 2562 3109 -3106 1183 123 5 0 chrX 37657521 37657725 -139316415 + L1MA8 LINE L1 6083 6287 -4 2635 39 0 16 chrX 37657735 37658047 -139316093 + AluY SINE Alu 1 307 -4 317 256 0 0 chrX 37658073 37658163 -139315977 + L1MEc LINE L1 3097 3186 -3029 * 3211 249 66 19 chrX 37658159 37659598 -139314542 + L1ME LINE L1 1858 3324 -2756 913 239 90 4 chrX 37659655 37659910 -139314230 - LTR16A LTR ERVL -172 278 2 2055 108 3 7 chrX 37660017 37660340 -139313800 + AluSx SINE Alu 3 324 0 22 0 0 0 chrX 37660340 37660362 -139313778 + AT_rich Low_complexity Low_complexity 1 22 0 268 235 106 12 chrX 37660383 37660468 -139313672 - L2 LINE L2 -16 3297 3205 2257 209 68 8 chrX 37663904 37664435 -139309705 - MER21B LTR ERV1 -11 852 290 2270 120 0 0 chrX 37664526 37664826 -139309314 - AluSx SINE Alu -12 300 1 4840 99 12 0 chrX 37664865 37665549 -139308591 - L1PA15 LINE L1 -4 6161 5470 256 123 56 78 chrX 37665569 37665748 -139308392 + (TTATA)n Simple_repeat Simple_repeat 2 176 0 * 433 154 33 55 chrX 37665628 37665810 -139308330 + (TTAA)n Simple_repeat Simple_repeat 2 179 0 312 222 17 33 chrX 37665822 37666002 -139308138 + (TAA)n Simple_repeat Simple_repeat 3 179 0 * 363 193 29 35 chrX 37665887 37666058 -139308082 + (TATAA)n Simple_repeat Simple_repeat 2 171 0 * 375 186 0 82 chrX 37665981 37666175 -139307965 + (TAAA)n Simple_repeat Simple_repeat 2 179 0 319 89 81 8 chrX 37666199 37666322 -139307818 + (TATAA)n Simple_repeat Simple_repeat 1 132 0 713 40 0 10 chrX 37666335 37666435 -139307705 - L1PA15 LINE L1 -698 5467 5369 857 182 168 10 chrX 37666441 37666644 -139307496 - MER21B LTR ERV1 -617 246 12 39 50 0 0 chrX 37667389 37667449 -139306691 + AT_rich Low_complexity Low_complexity 1 60 0 457 88 81 6 chrX 37667449 37667609 -139306531 + (TA)n Simple_repeat Simple_repeat 1 172 0 3118 144 31 13 chrX 37667670 37668225 -139305915 - MER34B LTR ERV1 0 565 1 1797 135 40 4 chrX 37669537 37669864 -139304276 + AluJo SINE Alu 1 337 0 7820 16 0 0 chrX 37670384 37671389 -139302751 - L1PA3 LINE L1 0 6155 5150 3962 34 0 0 chrX 37671389 37671888 -139302252 + L1PA3 LINE L1 4646 5144 -1002 2129 69 55 0 chrX 37672639 37672947 -139301193 + AluY SINE Alu 1 323 0 1236 211 49 98 chrX 37673298 37673628 -139300512 + L1MDa LINE L1 2079 2415 -4213 1646 153 108 13 chrX 37673628 37673942 -139300198 - MER2 DNA MER2_type 0 344 1 1236 211 49 98 chrX 37673942 37674233 -139299907 + L1MDa LINE L1 2415 2719 -3909 591 314 11 43 chrX 37674274 37674621 -139299519 + L1MCb LINE L1 27 362 -5683 513 285 50 46 chrX 37674927 37675242 -139298898 - L1MCc LINE L1 -5645 777 465 1653 106 171 33 chrX 37675242 37675517 -139298623 + AluSq SINE Alu 1 313 0 513 285 50 46 chrX 37675517 37675589 -139298551 - L1MCc LINE L1 -5957 465 44 1272 250 26 0 chrX 37675604 37676024 -139298116 - L1MC/D LINE L1 -734 5625 5197 189 376 85 12 chrX 37676141 37676306 -139297834 + L3 LINE CR1 209 385 -1192 2104 136 3 23 chrX 37676451 37676797 -139297343 + MER1B DNA MER1_type 1 339 0 1188 154 81 0 chrX 37676943 37677177 -139296963 - L1MD3 LINE L1 -13 7982 7730 1239 231 95 24 chrX 37677181 37677632 -139296508 - L1MC/D LINE L1 -939 5207 4725 1883 231 45 21 chrX 37677637 37678169 -139295971 + L1MD3 LINE L1 6733 7277 -718 722 172 0 0 chrX 37678170 37678292 -139295848 + MLT1F1 LTR MaLR 1 122 -445 1352 173 20 0 chrX 37678293 37678542 -139295598 + L1MD3 LINE L1 7402 7655 -340 * 3502 216 37 37 chrX 37678535 37678919 -139295221 - L1MC/D LINE L1 -1409 4737 4354 3146 37 3 0 chrX 37678919 37679298 -139294842 - L1PA4 LINE L1 -2 6153 5774 1812 163 0 11 chrX 37679298 37679581 -139294559 - AluSx SINE Alu -32 280 1 3502 216 37 37 chrX 37679581 37680223 -139293917 - L1MC/D LINE L1 -1790 4356 3710 429 188 164 36 chrX 37680236 37680401 -139293739 + L1M4 LINE L1 2445 2630 -3516 * 1868 235 6 19 chrX 37680386 37680900 -139293240 + L1M4 LINE L1 3409 3915 -2231 2481 194 78 63 chrX 37680903 37681709 -139292431 + L1M4 LINE L1 4052 4869 -1277 22 35 0 0 chrX 37682263 37682292 -139291848 + AT_rich Low_complexity Low_complexity 1 29 0 297 229 0 68 chrX 37684368 37684426 -139289714 - L1ME LINE L1 -397 5724 5676 2930 132 2 16 chrX 37684426 37684917 -139289223 - MER31A LTR ERV1 -1 484 1 297 229 0 68 chrX 37684917 37684976 -139289164 - L1ME LINE L1 -445 5676 5615 2138 132 0 0 chrX 37684977 37685272 -139288868 - AluJo SINE Alu -17 295 1 1582 219 75 29 chrX 37688026 37688543 -139285597 - L1MC4 LINE L1 0 8042 7502 419 291 137 0 chrX 37688570 37688687 -139285453 - L2 LINE L2 -18 3254 3122 360 195 12 24 chrX 37689619 37689701 -139284439 + MER94 DNA DNA 8 88 -46 721 294 99 5 chrX 37690356 37690761 -139283379 - L1M4 LINE L1 -1664 4482 4040 764 162 76 0 chrX 37690796 37690948 -139283192 + MER46A DNA MER2_type 2 176 -60 1342 241 156 19 chrX 37691003 37691980 -139282160 - L1M4 LINE L1 -2172 3974 2823 336 272 11 11 chrX 37691994 37692086 -139282054 + L1M4 LINE L1 2215 2306 -3840 274 257 100 7 chrX 37692092 37692232 -139281908 + L1M4 LINE L1 2350 2502 -3644 322 241 61 81 chrX 37694439 37694700 -139279440 + L1ME4a LINE L1 5855 6110 -11 209 194 71 31 chrX 37694726 37694824 -139279316 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 627 151 119 0 chrX 37694826 37694952 -139279188 + MIR SINE MIR 112 252 -10 306 0 0 0 chrX 37695322 37695356 -139278784 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 527 283 128 53 chrX 37695373 37695747 -139278393 - LTR67 LTR ERVL -7 550 149 587 137 0 11 chrX 37695795 37695890 -139278250 - AluYb8 SINE Alu -11 307 214 936 194 0 6 chrX 37696115 37696275 -139277865 + FRAM SINE Alu 1 159 -7 2149 123 13 0 chrX 37696738 37697039 -139277101 - AluSx SINE Alu -7 305 1 1990 218 92 23 chrX 37697522 37697961 -139276179 - MER68 LTR ERV1 -4 558 76 2515 204 105 11 chrX 37697961 37698533 -139275607 - MLT1E2 LTR MaLR 0 626 1 1990 218 92 23 chrX 37698533 37698615 -139275525 - MER68 LTR ERV1 -486 76 1 206 233 33 0 chrX 37698912 37698972 -139275168 + MIR SINE MIR 74 135 -127 197 191 34 79 chrX 37699067 37699156 -139274984 - L2 LINE L2 -50 3263 3179 555 21 65 0 chrX 37699715 37699808 -139274332 + CT-rich Low_complexity Low_complexity 2 100 0 191 323 54 39 chrX 37700679 37700809 -139273331 + MIR SINE MIR 56 187 -75 324 282 123 36 chrX 37701404 37701624 -139272516 + MIR SINE MIR 13 251 -11 979 185 72 26 chrX 37701988 37702183 -139271957 + MER63A DNA MER1_type 1 204 -6 186 43 0 0 chrX 37702210 37702233 -139271907 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2125 150 19 14 chrX 37703935 37704295 -139269845 - MLT1A1 LTR MaLR 0 365 4 1170 185 26 9 chrX 37704737 37704964 -139269176 - MSTB2 LTR MaLR -226 231 1 376 232 35 78 chrX 37705098 37705240 -139268900 - LTR67 LTR ERVL 0 557 422 5432 124 40 9 chrX 37706265 37707239 -139266901 + L1MB1 LINE L1 5160 6168 0 28 0 0 0 chrX 37707340 37707368 -139266772 + AT_rich Low_complexity Low_complexity 1 28 0 1900 174 36 77 chrX 37708790 37709284 -139264856 - HsTC2 DNA Tc2 0 1900 1251 706 229 7 0 chrX 37709260 37709413 -139264727 - HsTC2 DNA Tc2 -1385 513 360 * 1094 227 25 73 chrX 37709540 37709925 -139264215 - L1MD2 LINE L1 -17 6342 5970 3757 316 35 6 chrX 37709964 37711226 -139262914 - HERV16 LTR ERVL -3432 1564 266 1736 240 61 22 chrX 37711470 37711915 -139262225 - LTR16B LTR ERVL -2 462 1 279 79 0 0 chrX 37711991 37712029 -139262111 + (TC)n Simple_repeat Simple_repeat 1 38 0 1936 133 4 0 chrX 37712029 37712307 -139261833 - AluJb SINE Alu -22 290 12 2004 184 112 2 chrX 37713238 37713657 -139260483 + MLT1C LTR MaLR 1 465 -2 816 81 0 0 chrX 37713856 37713955 -139260185 - AluS SINE Alu -213 99 1 188 83 0 28 chrX 37713968 37714004 -139260136 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 5337 32 1 18 chrX 37714004 37714689 -139259451 - L1PA4 LINE L1 -24 6131 5462 648 288 86 21 chrX 37714730 37714973 -139259167 - MIR SINE MIR -2 260 2 2477 203 65 25 chrX 37716382 37716940 -139257200 - L1ME1 LINE L1 -5 6161 5582 203 175 0 0 chrX 37718449 37718489 -139255651 + (TAA)n Simple_repeat Simple_repeat 3 42 0 305 306 88 38 chrX 37719218 37719506 -139254634 + L2 LINE L2 2775 3081 -191 284 296 114 0 chrX 37719761 37719893 -139254247 - L2 LINE L2 -2606 708 562 884 182 19 0 chrX 37720015 37720169 -139253971 + FRAM SINE Alu 1 156 -20 198 150 0 0 chrX 37720392 37720432 -139253708 + (CTA)n Simple_repeat Simple_repeat 1 40 0 26 0 0 0 chrX 37720995 37721021 -139253119 + AT_rich Low_complexity Low_complexity 1 26 0 1307 188 110 55 chrX 37721327 37721673 -139252467 + MLT1A1 LTR MaLR 1 365 0 1934 167 229 15 chrX 37721946 37722401 -139251739 - L1MD2 LINE L1 -78 6281 5730 1166 97 32 75 chrX 37722403 37722589 -139251551 - FRAM SINE Alu -5 171 1 9778 176 108 45 chrX 37722604 37723041 -139251099 - L1MDa LINE L1 -4007 2533 2125 2108 130 23 0 chrX 37723041 37723340 -139250800 - AluSx SINE Alu -6 306 1 9778 176 108 45 chrX 37723340 37723998 -139250142 - L1MDa LINE L1 -4415 2125 1510 1796 129 56 31 chrX 37723998 37724284 -139249856 + AluSx SINE Alu 1 293 -19 9778 176 108 45 chrX 37724284 37725565 -139248575 - L1MDa LINE L1 -5030 1510 5 1595 241 121 71 chrX 37725583 37726313 -139247827 - L1MC5 LINE L1 -46 7915 7223 1081 164 26 62 chrX 37726313 37726539 -139247601 + MER20 DNA MER1_type 2 219 0 1595 241 121 71 chrX 37726539 37728036 -139246104 - L1MC5 LINE L1 -738 7223 5543 572 168 168 7 chrX 37729186 37729329 -139244811 + MIR SINE MIR 97 262 0 479 316 0 68 chrX 37729357 37729623 -139244517 + L2 LINE L2 2701 2948 -366 525 206 19 0 chrX 37729838 37729945 -139244195 + MIR SINE MIR 90 198 -64 246 250 11 23 chrX 37730016 37730104 -139244036 + L1M LINE L1 5318 5404 -766 217 284 253 0 chrX 37730122 37730217 -139243923 - L2 LINE L2 0 3313 3195 362 317 85 20 chrX 37730327 37730526 -139243614 - L2 LINE L2 -353 2961 2750 225 258 16 129 chrX 37730530 37730610 -139243530 - MLT1J LTR MaLR -2 509 446 363 228 78 106 chrX 37730610 37730790 -139243350 - MER104 DNA MER2_type -4 176 2 225 258 16 129 chrX 37730790 37730833 -139243307 - MLT1J LTR MaLR -65 446 400 307 248 9 28 chrX 37730938 37731047 -139243093 - L1MC5 LINE L1 -1479 4667 4561 1878 124 2 146 chrX 37731092 37731231 -139242909 - MER2 DNA MER2_type 0 345 188 1803 104 58 84 chrX 37731231 37731577 -139242563 + MER1B DNA MER1_type 1 337 0 1878 124 2 146 chrX 37731577 37731840 -139242300 - MER2 DNA MER2_type -157 188 1 24 32 0 0 chrX 37732016 37732047 -139242093 + AT_rich Low_complexity Low_complexity 1 31 0 975 194 36 60 chrX 37732091 37732343 -139241797 + Charlie2 DNA MER1_type 76 321 -2541 3525 216 50 17 chrX 37732373 37733303 -139240837 + Charlie2 DNA MER1_type 1876 2835 -27 240 261 43 0 chrX 37733803 37733872 -139240268 + L2 LINE L2 3239 3310 -3 180 0 0 0 chrX 37734094 37734114 -139240026 + (CAG)n Simple_repeat Simple_repeat 2 21 0 455 283 11 44 chrX 37735495 37735675 -139238465 + MER5A DNA MER1_type 16 189 0 294 236 0 0 chrX 37735922 37736045 -139238095 + G-rich Low_complexity Low_complexity 5 127 0 249 228 0 0 chrX 37736322 37736401 -139237739 + (CCCCAG)n Simple_repeat Simple_repeat 1 79 0 249 33 0 0 chrX 37738767 37738797 -139235343 + (A)n Simple_repeat Simple_repeat 1 30 0 425 256 45 34 chrX 37738797 37738973 -139235167 + MIR SINE MIR 79 256 -6 254 280 48 56 chrX 37739766 37739891 -139234249 + L2 LINE L2 3190 3313 0 1547 229 76 39 chrX 37740206 37740741 -139233399 - L1MC3 LINE L1 0 8042 7505 2430 81 0 19 chrX 37741463 37741773 -139232367 - AluSx SINE Alu -8 304 1 658 148 82 15 chrX 37742351 37742486 -139231654 - L1ME3A LINE L1 0 6170 6027 455 238 8 16 chrX 37742497 37742623 -139231517 - L1ME3A LINE L1 -194 5976 5852 432 94 62 0 chrX 37742640 37742704 -139231436 - MER51D LTR ERV1 -90 567 500 788 145 61 0 chrX 37742805 37742936 -139231204 - FRAM SINE Alu 0 40 1 1130 141 0 47 chrX 37743185 37743377 -139230763 - MER5A DNA MER1_type -6 183 1 474 306 57 89 chrX 37743847 37744183 -139229957 + L1MEd LINE L1 12 336 -5783 226 261 80 11 chrX 37744263 37744351 -139229789 + L1MEd LINE L1 465 558 -5561 254 111 0 0 chrX 37744892 37744937 -139229203 + L1MA4A LINE L1 6259 6303 0 388 332 60 68 chrX 37745075 37745458 -139228682 + L1MEd LINE L1 88 467 -5738 515 390 19 24 chrX 37745589 37746002 -139228138 + L1MEd LINE L1 539 949 -5256 615 298 139 19 chrX 37746238 37746711 -139227429 + L1MEd LINE L1 1288 1817 -4579 531 253 74 7 chrX 37747089 37747358 -139226782 + L1MEd LINE L1 2952 3238 -2977 1729 128 32 32 chrX 37747365 37747647 -139226493 + AluSx SINE Alu 30 311 -1 303 264 139 31 chrX 37747657 37747786 -139226354 + L1MEd LINE L1 3224 3366 -2849 2372 107 3 0 chrX 37747793 37748102 -139226038 + AluSx SINE Alu 1 310 -2 288 0 0 0 chrX 37748102 37748134 -139226006 + (TA)n Simple_repeat Simple_repeat 2 33 0 571 259 57 20 chrX 37748272 37748519 -139225621 + L1MEd LINE L1 3656 3911 -2304 377 322 27 0 chrX 37748529 37748675 -139225465 + HAL1 LINE L1 2 151 -2356 1252 276 35 51 chrX 37748709 37749282 -139224858 + L1MCb LINE L1 3 566 -5479 422 208 0 10 chrX 37749374 37749475 -139224665 + L1MCb LINE L1 571 670 -5375 2010 152 3 0 chrX 37749614 37749903 -139224237 - AluJo SINE Alu -22 290 1 1411 161 144 29 chrX 37750675 37751092 -139223048 + Charlie1b DNA MER1_type 12 476 -47 2356 232 78 2 chrX 37751093 37751735 -139222405 - L1ME1 LINE L1 -3 6163 5473 565 101 20 10 chrX 37751735 37751834 -139222306 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 1975 124 35 0 chrX 37751838 37752019 -139222121 - AluSx SINE Alu 0 312 116 213 65 0 0 chrX 37752019 37752050 -139222090 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1975 124 35 0 chrX 37752050 37752150 -139221990 - AluSx SINE Alu -196 116 21 2994 227 20 30 chrX 37752158 37752269 -139221871 - L1ME1 LINE L1 -673 5493 5382 1834 188 0 6 chrX 37752269 37752583 -139221557 - AluJb SINE Alu 0 312 1 2994 227 20 30 chrX 37752583 37753334 -139220806 - L1ME1 LINE L1 -784 5382 4625 1836 117 62 91 chrX 37753334 37753720 -139220420 + THE1C LTR MaLR 1 375 0 6052 160 106 48 chrX 37753720 37755214 -139218926 + THE1C-int LTR MaLR 1 1580 0 1664 143 49 83 chrX 37755216 37755602 -139218538 + THE1C LTR MaLR 3 375 0 2994 227 20 30 chrX 37755602 37755791 -139218349 - L1ME1 LINE L1 -1541 4625 4448 974 232 75 15 chrX 37756385 37756652 -139217488 + L1MEc LINE L1 20 302 -6094 719 182 176 0 chrX 37756657 37756752 -139217388 + L1MA9 LINE L1 6048 6125 -187 234 0 0 0 chrX 37756752 37756778 -139217362 + (CA)n Simple_repeat Simple_repeat 2 27 0 719 182 176 0 chrX 37756778 37756858 -139217282 + L1MA9 LINE L1 6125 6254 -58 236 212 24 47 chrX 37756927 37756979 -139217161 + A-rich Low_complexity Low_complexity 2 53 -31 448 116 0 0 chrX 37756979 37757048 -139217092 + L1MA9 LINE L1 6239 6307 -5 236 212 24 47 chrX 37757048 37757080 -139217060 + A-rich Low_complexity Low_complexity 53 84 0 472 287 27 0 chrX 37757146 37757369 -139216771 + L1MEc LINE L1 378 656 -5740 2961 158 52 32 chrX 37757369 37758046 -139216094 - MER67C LTR ERV1 0 710 21 2802 245 60 35 chrX 37758059 37759212 -139214928 + L1MEc LINE L1 653 1834 -4562 2243 68 51 3 chrX 37759253 37759545 -139214595 - AluSg SINE Alu -4 306 1 6831 236 39 35 chrX 37759866 37759994 -139214146 + L1M4 LINE L1 2900 3026 -3120 5338 45 0 5 chrX 37759994 37760644 -139213496 - L1PA6 LINE L1 -2 6152 5506 6831 236 39 35 chrX 37760644 37762611 -139211529 + L1M4 LINE L1 3026 5010 -1136 2308 93 3 16 chrX 37762611 37762947 -139211193 + AluSp SINE Alu 1 313 0 6831 236 39 35 chrX 37762947 37763259 -139210881 + L1M4 LINE L1 5010 5319 -827 258 116 0 0 chrX 37763323 37763366 -139210774 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 460 258 131 25 chrX 37763427 37763787 -139210353 + L1M4 LINE L1 3633 4030 -2116 409 286 95 16 chrX 37763790 37764094 -139210046 + L1M4 LINE L1 4102 4429 -1717 1890 234 56 30 chrX 37764172 37764944 -139209196 - L2 LINE L2 -5 3308 2502 977 137 86 15 chrX 37764945 37765142 -139208998 + MER2 DNA MER2_type 1 211 -134 1331 261 18 9 chrX 37765228 37765554 -139208586 - L2 LINE L2 -858 2456 2128 2267 236 282 96 chrX 37765927 37766194 -139207946 + L2 LINE L2 8 224 -3090 283 283 115 0 chrX 37766194 37766307 -139207833 - MER94 DNA DNA -7 127 2 2267 236 282 96 chrX 37766307 37767464 -139206676 + L2 LINE L2 224 1829 -1485 1334 204 36 4 chrX 37767464 37767935 -139206205 - L1MD2 LINE L1 -10 6349 5815 251 200 0 0 chrX 37768804 37768859 -139205281 - L1MD2 LINE L1 -2419 5623 5569 1707 111 4 4 chrX 37768863 37769098 -139205042 + AluSg/x SINE Alu 76 310 -2 3393 246 99 29 chrX 37769121 37770465 -139203675 - L2 LINE L2 -67 3246 1823 715 193 78 6 chrX 37770466 37770632 -139203508 + L1MDa LINE L1 9 186 -6354 2549 207 67 41 chrX 37770633 37771494 -139202646 + L1MDa LINE L1 660 1687 -4853 201 208 0 83 chrX 37771503 37771551 -139202589 + L2 LINE L2 3252 3295 -18 27 0 0 0 chrX 37771638 37771665 -139202475 + AT_rich Low_complexity Low_complexity 1 27 0 540 226 0 90 chrX 37771883 37772060 -139202080 - L2 LINE L2 -437 2877 2717 267 317 25 56 chrX 37772606 37772767 -139201373 + MIR SINE MIR 55 210 -52 1034 224 110 0 chrX 37772860 37773150 -139200990 + MER5C DNA MER1_type 3 324 0 2230 107 0 10 chrX 37773441 37773739 -139200401 - AluSx SINE Alu -17 295 1 995 251 77 40 chrX 37773932 37773952 -139200188 - L1MC4a LINE L1 -1961 5847 5829 1793 193 7 0 chrX 37773952 37774252 -139199888 - AluJo SINE Alu -10 302 1 995 251 77 40 chrX 37774252 37774578 -139199562 - L1MC4a LINE L1 -1979 5829 5516 243 88 0 0 chrX 37774578 37774612 -139199528 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1959 134 0 0 chrX 37774618 37774893 -139199247 - AluSx SINE Alu -37 275 1 995 251 77 40 chrX 37774893 37775008 -139199132 - L1MC4a LINE L1 -2296 5512 5361 265 236 0 18 chrX 37775211 37775266 -139198874 + L2 LINE L2 3202 3255 -17 630 215 230 20 chrX 37775958 37776158 -139197982 - MIR SINE MIR 0 262 21 2190 86 18 0 chrX 37776609 37776888 -139197252 - AluSq SINE Alu -29 284 1 253 352 72 53 chrX 37777027 37777291 -139196849 + L2 LINE L2 2696 2964 -350 3600 149 52 2 chrX 37777412 37778049 -139196091 + LTR65 LTR ERV1 1 669 0 390 255 0 41 chrX 37778151 37778249 -139195891 + MIR SINE MIR 50 143 -65 363 295 108 8 chrX 37778271 37778400 -139195740 + MIR SINE MIR 21 162 -100 586 228 74 12 chrX 37778484 37778646 -139195494 + MIR SINE MIR 73 244 -18 2063 58 48 65 chrX 37780572 37780881 -139193259 - AluSx SINE Alu -8 304 1 233 239 149 37 chrX 37781024 37781158 -139192982 - L1ME4a LINE L1 -8 6113 5965 604 294 218 18 chrX 37783081 37783516 -139190624 - L2 LINE L2 -470 2844 2323 629 219 56 124 chrX 37783953 37784070 -139190070 + MIR SINE MIR 46 141 -121 4246 110 14 1 chrX 37784070 37784723 -139189417 + L1MA4 LINE L1 5629 6289 -11 629 219 56 124 chrX 37784723 37784838 -139189302 + MIR SINE MIR 141 262 0 402 263 144 38 chrX 37785029 37785070 -139189070 - MIR3 SINE MIR -14 194 159 2455 50 0 0 chrX 37785070 37785367 -139188773 + AluY SINE Alu 1 297 -14 402 263 144 38 chrX 37785367 37785485 -139188655 - MIR3 SINE MIR -49 159 18 389 325 16 24 chrX 37785829 37785952 -139188188 - L2 LINE L2 -1 3271 3150 307 270 90 11 chrX 37786073 37786162 -139187978 - MER5B DNA MER1_type -23 155 60 897 261 161 40 chrX 37786456 37786978 -139187162 + L1ME4a LINE L1 5291 5875 -246 1248 199 21 8 chrX 37787033 37787269 -139186871 + MER8 DNA MER2_type 1 239 0 572 265 41 7 chrX 37787272 37787414 -139186726 + MIR SINE MIR 18 164 -98 718 203 55 6 chrX 37787414 37787577 -139186563 + MER5B DNA MER1_type 2 172 -6 253 211 224 0 chrX 37787597 37787673 -139186467 + MIR SINE MIR 170 262 0 307 210 120 0 chrX 37787929 37788029 -139186111 + L1ME4a LINE L1 5711 5822 -299 1583 135 22 94 chrX 37788034 37788353 -139185787 + AluJo SINE Alu 1 296 -16 1772 164 0 0 chrX 37788366 37788640 -139185500 - AluJb SINE Alu -36 276 3 317 216 58 14 chrX 37788736 37788875 -139185265 + L1ME4a LINE L1 5976 6120 -1 33 25 0 0 chrX 37789653 37789693 -139184447 + AT_rich Low_complexity Low_complexity 1 40 0 237 320 150 10 chrX 37789870 37789970 -139184170 + MIR SINE MIR 22 135 -127 918 150 47 52 chrX 37789971 37790184 -139183956 + MIR SINE MIR 16 227 -35 472 246 53 86 chrX 37790339 37790526 -139183614 - MIR3 SINE MIR -25 183 3 237 242 21 95 chrX 37791799 37791894 -139182246 - L2 LINE L2 -3 3310 3223 229 290 29 0 chrX 37992133 37992202 -138981938 + CT-rich Low_complexity Low_complexity 3 73 0 208 325 17 103 chrX 37993863 37993980 -138980160 + L2 LINE L2 3164 3270 -2 189 0 0 0 chrX 37994112 37994133 -138980007 + (CTTTG)n Simple_repeat Simple_repeat 2 22 0 180 231 11 165 chrX 37994272 37994363 -138979777 - L2 LINE L2 -24 3248 3172 670 242 13 7 chrX 37994505 37994654 -138979486 - MIR SINE MIR -86 176 27 253 306 64 19 chrX 37995338 37995472 -138978668 + MIR SINE MIR 4 146 -62 515 328 62 31 chrX 37996033 37996390 -138977750 + L2 LINE L2 1635 2002 -1312 5890 124 38 1 chrX 37996439 37997408 -138976732 + L1MA4 LINE L1 5296 6300 0 2183 116 3 0 chrX 37997418 37997712 -138976428 - AluSx SINE Alu -17 295 1 382 348 185 15 chrX 37997722 37998133 -138976007 + L2 LINE L2 2018 2498 -816 240 278 133 0 chrX 37998453 37998543 -138975597 + MIR SINE MIR 148 249 -13 280 315 8 55 chrX 37999483 37999610 -138974530 + L2 LINE L2 2562 2682 -632 2291 104 0 0 chrX 38000023 38000312 -138973828 - AluSx SINE Alu -23 289 1 306 266 93 63 chrX 38000543 38000780 -138973360 + L1 LINE L1 3150 3393 -2753 261 277 69 8 chrX 38001040 38001170 -138972970 + L1 LINE L1 3635 3772 -2374 600 164 79 0 chrX 38001193 38001345 -138972795 - LTR37A LTR ERV1 0 426 263 207 362 27 27 chrX 38001618 38001767 -138972373 + L2 LINE L2 470 618 -2696 1072 118 43 5 chrX 38001776 38001963 -138972177 - L1MA5A LINE L1 -2 6295 6102 313 304 109 0 chrX 38002203 38002295 -138971845 - L2 LINE L2 -24 3248 3147 292 213 107 0 chrX 38002302 38002377 -138971763 - MER58B DNA MER1_type -15 326 244 2306 96 54 0 chrX 38002377 38002730 -138971410 - L1MA5A LINE L1 -257 6040 5669 200 188 0 0 chrX 38002730 38002762 -138971378 + (CATA)n Simple_repeat Simple_repeat 3 34 0 857 180 133 0 chrX 38002762 38002973 -138971167 + MER58B DNA MER1_type 88 326 -15 313 304 109 0 chrX 38002981 38003073 -138971067 + L2 LINE L2 3147 3248 -24 24 0 0 0 chrX 38003557 38003581 -138970559 + AT_rich Low_complexity Low_complexity 1 24 0 846 216 4 122 chrX 38003581 38003835 -138970305 + MER58A DNA MER1_type 1 224 0 402 284 26 26 chrX 38004086 38004202 -138969938 - L2 LINE L2 -1 3271 3156 355 298 36 42 chrX 38004191 38004359 -138969781 + MIR SINE MIR 34 200 -62 * 21 36 0 0 chrX 38004378 38004406 -138969734 + AT_rich Low_complexity Low_complexity 1 28 0 359 217 87 70 chrX 38004410 38004525 -138969615 - L2 LINE L2 -6 3307 3191 2224 55 0 28 chrX 38004662 38004976 -138969164 + AluY SINE Alu 1 306 0 484 319 37 16 chrX 38005202 38005390 -138968750 - MIR3 SINE MIR -1 207 16 218 335 65 49 chrX 38006195 38006440 -138967700 + L2 LINE L2 1540 1788 -1526 1881 210 59 16 chrX 38006477 38006920 -138967220 - MLT1C LTR MaLR 0 467 6 659 319 136 53 chrX 38006925 38007761 -138966379 + L2 LINE L2 1954 2928 -344 3322 55 18 35 chrX 38007761 38008213 -138965927 - MLT2A1 LTR ERVL 0 444 1 659 319 136 53 chrX 38008213 38008590 -138965550 + L2 LINE L2 2928 3272 0 190 217 0 22 chrX 38008703 38008749 -138965391 - L2 LINE L2 -829 2485 2441 223 353 0 0 chrX 38008791 38008859 -138965281 - MIR SINE MIR -1 261 194 483 332 37 21 chrX 38008873 38009114 -138965026 - L2 LINE L2 -946 2368 2124 1778 286 55 65 chrX 38009148 38010308 -138963832 - L2 LINE L2 0 3313 2170 1031 215 6 57 chrX 38010308 38010624 -138963516 + L1MC4 LINE L1 7743 8042 0 1554 222 114 134 chrX 38010744 38011199 -138962941 - L2 LINE L2 -1141 2173 1743 1550 106 13 0 chrX 38011199 38011435 -138962705 + L1MA4 LINE L1 6056 6294 -6 1554 222 114 134 chrX 38011435 38011880 -138962260 - L2 LINE L2 -1571 1743 1291 430 348 36 36 chrX 38011880 38012101 -138962039 - L2 LINE L2 -1285 2029 1809 183 323 113 0 chrX 38012154 38012216 -138961924 + L2 LINE L2 3137 3205 -67 250 291 64 18 chrX 38013179 38013289 -138960851 + L2 LINE L2 3199 3313 0 215 353 41 33 chrX 38014349 38014471 -138959669 + L3b LINE CR1 1106 1228 -355 293 323 108 48 chrX 38014848 38015015 -138959125 + L3b LINE CR1 1272 1448 -135 492 291 71 95 chrX 38015229 38015649 -138958491 + L2 LINE L2 2150 2559 -755 1382 68 4 112 chrX 38015650 38015901 -138958239 - L1PA13 LINE L1 -11 6152 5929 372 344 151 19 chrX 38015914 38016173 -138957967 + L2 LINE L2 2894 3186 -86 2686 225 52 41 chrX 38016251 38017244 -138956896 - L1M4 LINE L1 -999 5541 4538 * 5945 167 43 15 chrX 38017220 38018581 -138955559 - L1MDa LINE L1 -3772 2768 1366 15749 106 17 31 chrX 38018585 38020046 -138954094 + Tigger1 DNA MER2_type 1 1481 -937 6744 56 0 0 chrX 38020046 38020887 -138953253 + L1PA7 LINE L1 5314 6154 0 15749 106 17 31 chrX 38020887 38021396 -138952744 + Tigger1 DNA MER2_type 1481 1933 -485 1760 139 19 4 chrX 38021396 38021663 -138952477 + AluJb SINE Alu 1 271 -41 15749 106 17 31 chrX 38021663 38022143 -138951997 + Tigger1 DNA MER2_type 1933 2418 0 4960 191 103 11 chrX 38022144 38023265 -138950875 - L1MDa LINE L1 -5178 1362 139 397 183 59 0 chrX 38023301 38023403 -138950737 - L1M LINE L1 -844 5302 5213 618 160 38 0 chrX 38023428 38023534 -138950606 - L1MDa LINE L1 -6415 125 16 34 24 0 0 chrX 38023591 38023632 -138950508 + AT_rich Low_complexity Low_complexity 1 41 0 358 280 9 37 chrX 38024807 38024914 -138949226 - MIR SINE MIR -133 129 26 438 281 12 47 chrX 38025201 38025372 -138948768 - MIR SINE MIR -21 241 77 347 17 67 0 chrX 38026042 38026102 -138948038 + (TG)n Simple_repeat Simple_repeat 2 65 0 199 208 19 38 chrX 38027035 38027088 -138947052 - L2 LINE L2 -1 3312 3261 183 241 35 52 chrX 38027433 38027491 -138946649 - L2 LINE L2 -541 2773 2717 215 249 171 69 chrX 38027959 38028176 -138945964 + L2 LINE L2 1686 1924 -1390 427 238 232 0 chrX 38028261 38028412 -138945728 + MIR SINE MIR 71 256 -6 2214 106 0 7 chrX 38028484 38028777 -138945363 - AluSg SINE Alu -18 292 2 557 249 158 18 chrX 38028867 38029032 -138945108 - MER5A DNA MER1_type 0 189 2 325 281 85 55 chrX 38029042 38029241 -138944899 + L2 LINE L2 2160 2364 -950 1884 120 74 0 chrX 38029499 38029782 -138944358 + AluSx SINE Alu 1 304 -8 455 292 77 44 chrX 38029807 38030081 -138944059 + L1MC4a LINE L1 5114 5396 -750 1616 179 7 11 chrX 38030085 38030364 -138943776 + AluJo SINE Alu 6 283 -29 658 99 36 0 chrX 38030372 38030483 -138943657 + GA-rich Low_complexity Low_complexity 3 117 0 270 263 53 59 chrX 38030485 38030637 -138943503 + L1MC4a LINE L1 5386 5536 -2272 545 149 113 13 chrX 38030638 38030752 -138943388 + MER5A DNA MER1_type 9 116 -62 629 318 82 16 chrX 38030787 38031165 -138942975 + L1MC4a LINE L1 5522 5924 -1884 651 215 76 0 chrX 38031170 38031314 -138942826 - MIR SINE MIR -106 156 2 291 325 146 35 chrX 38032338 38032707 -138941433 - L2 LINE L2 -474 2840 2431 1523 161 14 135 chrX 38032743 38033158 -138940982 - MLT1A1 LTR MaLR 0 365 1 8643 145 21 15 chrX 38033408 38035344 -138938796 + L1MA9 LINE L1 3818 5768 -523 206 94 47 35 chrX 38035418 38035503 -138938637 + (TA)n Simple_repeat Simple_repeat 1 86 0 1040 100 59 0 chrX 38035508 38035678 -138938462 + L1MA9 LINE L1 5783 5962 -329 3498 114 17 17 chrX 38035678 38036209 -138937931 + L1PA16 LINE L1 5625 6157 -9 26 0 0 0 chrX 38036209 38036235 -138937905 + AT_rich Low_complexity Low_complexity 1 26 0 1841 148 45 11 chrX 38036237 38036594 -138937546 + L1MA9 LINE L1 5937 6305 -7 824 161 86 11 chrX 38037021 38037065 -138937075 - MER5A DNA MER1_type -1 188 149 11946 74 14 0 chrX 38037065 38039414 -138934726 + L1PA7 LINE L1 3784 6154 0 824 161 86 11 chrX 38039414 38039543 -138934597 - MER5A DNA MER1_type -40 149 2 195 69 0 0 chrX 38039884 38039913 -138934227 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2148 97 3 33 chrX 38040339 38040638 -138933502 + AluSc SINE Alu 1 290 -19 1063 263 54 48 chrX 38040640 38041157 -138932983 - L1ME4a LINE L1 -3 6118 5599 596 129 11 0 chrX 38041155 38041248 -138932892 - L1MB7 LINE L1 -23 6161 6068 * 556 176 49 0 chrX 38041256 38041358 -138932782 - U6 snRNA snRNA 0 107 1 347 283 127 12 chrX 38041359 38041525 -138932615 - L1ME4a LINE L1 -507 5614 5430 864 301 73 15 chrX 38042716 38043124 -138931016 + L2 LINE L2 2472 2903 -411 450 0 0 0 chrX 38044419 38044469 -138929671 + (CA)n Simple_repeat Simple_repeat 2 51 0 372 254 261 0 chrX 38045765 38045903 -138928237 + MER5A DNA MER1_type 9 182 -7 189 170 21 64 chrX 38046051 38046098 -138928042 - L2 LINE L2 -12 3301 3257 * 367 209 116 0 chrX 38046093 38046179 -138927961 - MIR SINE MIR -67 141 46 374 269 30 16 chrX 38046595 38046746 -138927394 - MIR3 SINE MIR -10 198 45 684 255 35 20 chrX 38048122 38048232 -138925908 + MIR SINE MIR 48 164 -98 1863 151 0 41 chrX 38048232 38048549 -138925591 + AluJo SINE Alu 1 304 -8 684 255 35 20 chrX 38048549 38048638 -138925502 + MIR SINE MIR 164 250 -12 316 327 46 13 chrX 38048666 38048819 -138925321 - MIR SINE MIR -27 235 78 2284 101 3 3 chrX 38049085 38049383 -138924757 + AluSx SINE Alu 1 298 -14 528 291 81 5 chrX 38049520 38049730 -138924410 - MIR SINE MIR -1 261 36 382 255 41 0 chrX 38049863 38049961 -138924179 - L2 LINE L2 -226 3046 2945 711 238 72 5 chrX 38049992 38050185 -138923955 - MIR SINE MIR -34 228 23 196 291 73 0 chrX 38050772 38050827 -138923313 + L2 LINE L2 3189 3247 -25 187 341 68 0 chrX 38051373 38051461 -138922679 + L2 LINE L2 3201 3294 -19 289 251 0 73 chrX 38051535 38051726 -138922414 + CT-rich Low_complexity Low_complexity 1 177 0 410 328 54 39 chrX 38052036 38052240 -138921900 + L2 LINE L2 3063 3269 -3 443 211 119 0 chrX 38052396 38052505 -138921635 - L2 LINE L2 0 3313 3192 244 244 39 13 chrX 38052942 38053020 -138921120 + MIR SINE MIR 34 113 -95 564 261 67 10 chrX 38053030 38053225 -138920915 + L2 LINE L2 1993 2198 -1116 365 256 17 0 chrX 38054027 38054144 -138919996 - MIR SINE MIR -12 250 132 307 281 41 8 chrX 38054164 38054285 -138919855 + MIR SINE MIR 29 153 -109 1323 156 0 0 chrX 38054291 38054502 -138919638 + L1PA16 LINE L1 5956 6166 0 194 225 0 0 chrX 38054533 38054573 -138919567 + L2 LINE L2 3214 3253 -19 218 287 11 144 chrX 38054607 38054711 -138919429 + MIR3 SINE MIR 43 115 -93 797 184 60 38 chrX 38054711 38054896 -138919244 + MER5A DNA MER1_type 1 189 0 218 287 11 144 chrX 38054896 38054972 -138919168 + MIR3 SINE MIR 115 199 -9 24 32 0 0 chrX 38057880 38057911 -138916229 + AT_rich Low_complexity Low_complexity 1 31 0 222 328 35 9 chrX 38058183 38058299 -138915841 + MIR SINE MIR 117 235 -27 845 197 43 107 chrX 38058725 38059025 -138915115 + L1ME2 LINE L1 5874 6154 -10 308 125 18 0 chrX 38059104 38059160 -138914980 - L1M4 LINE L1 -1685 4461 4405 3940 207 60 30 chrX 38059197 38060236 -138913904 - L1M4 LINE L1 -1721 4425 3356 358 185 64 32 chrX 38060284 38060430 -138913710 + L1MC4 LINE L1 7783 8037 -5 549 257 180 14 chrX 38060438 38060660 -138913480 + MIR SINE MIR 3 261 -1 397 212 116 48 chrX 38061269 38061415 -138912725 - MIR SINE MIR -54 208 53 673 297 88 0 chrX 38061422 38061661 -138912479 - MIR SINE MIR -1 261 2 187 194 0 0 chrX 38062165 38062201 -138911939 - L2 LINE L2 -27 3245 3210 277 333 53 0 chrX 38063606 38063720 -138910420 + L2 LINE L2 3181 3300 -13 605 279 88 9 chrX 38063784 38063999 -138910141 - MIR SINE MIR 0 262 31 221 203 0 34 chrX 38064250 38064309 -138909831 - MIR SINE MIR -57 205 149 412 169 39 130 chrX 38064345 38064499 -138909641 - MER5A DNA MER1_type -48 141 2 265 279 0 0 chrX 38064521 38064589 -138909551 - MIR SINE MIR -147 115 48 733 212 36 84 chrX 38064804 38065054 -138909086 + MIR SINE MIR 15 252 -10 916 281 103 48 chrX 38065406 38066133 -138908007 - L1ME4a LINE L1 -28 6093 5327 1081 171 0 11 chrX 38066215 38066391 -138907749 + FRAM SINE Alu 1 171 -5 3137 173 50 8 chrX 38066844 38067447 -138906693 - L1MB8 LINE L1 -37 6141 5514 2295 105 0 0 chrX 38067509 38067805 -138906335 + AluSx SINE Alu 1 296 -16 1136 132 22 0 chrX 38067901 38068083 -138906057 + MER5A DNA MER1_type 2 187 -2 337 245 41 0 chrX 38068699 38068797 -138905343 - MIR SINE MIR -56 206 105 677 246 22 11 chrX 38068826 38069005 -138905135 - MIR SINE MIR -1 261 81 599 281 62 44 chrX 38069318 38069883 -138904257 + L1ME LINE L1 4408 4982 -1164 21 0 0 0 chrX 38070098 38070119 -138904021 + AT_rich Low_complexity Low_complexity 1 21 0 332 296 75 86 chrX 38070152 38070432 -138903708 + L1ME LINE L1 5320 5596 -525 347 293 195 11 chrX 38072124 38072298 -138901842 + MIR SINE MIR 31 236 -26 1696 131 104 0 chrX 38072309 38072569 -138901571 + AluSx SINE Alu 1 287 -25 1314 69 0 0 chrX 38072570 38072744 -138901396 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 280 210 97 153 chrX 38073786 38073910 -138900230 - MIR3 SINE MIR -80 128 12 505 338 6 6 chrX 38074226 38074386 -138899754 + MER5A DNA MER1_type 6 165 -24 250 204 84 108 chrX 38074422 38074589 -138899551 - Charlie7 DNA MER1_type -1 2611 2449 665 283 137 54 chrX 38075365 38075680 -138898460 - L2 LINE L2 0 3272 2932 297 0 0 0 chrX 38075865 38075898 -138898242 + (CA)n Simple_repeat Simple_repeat 2 34 0 2473 276 100 44 chrX 38075940 38077583 -138896557 - L1ME4a LINE L1 -107 6014 4464 1902 151 21 0 chrX 38077583 38077868 -138896272 + AluSx SINE Alu 1 291 -21 2473 276 100 44 chrX 38077868 38079049 -138895091 - L1ME4a LINE L1 -1657 4464 2993 2053 126 0 26 chrX 38079049 38079359 -138894781 - AluSx SINE Alu -10 302 1 2473 276 100 44 chrX 38079359 38079581 -138894559 - L1ME4a LINE L1 -3128 2993 2785 2234 40 0 7 chrX 38079587 38079860 -138894280 + AluY SINE Alu 41 311 0 689 200 135 69 chrX 38080307 38080567 -138893573 - L2 LINE L2 0 3313 3037 288 0 0 0 chrX 38080612 38080644 -138893496 + (TG)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chrX 38080643 38080663 -138893477 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 216 143 54 0 chrX 38081239 38081295 -138892845 + (TA)n Simple_repeat Simple_repeat 2 60 0 243 0 0 0 chrX 38081304 38081331 -138892809 + (CA)n Simple_repeat Simple_repeat 2 28 0 1633 175 38 34 chrX 38081724 38082016 -138892124 - AluJb SINE Alu -19 293 1 1182 234 4 0 chrX 38082427 38082654 -138891486 + MIR SINE MIR 27 254 -8 191 59 0 59 chrX 38082655 38082689 -138891451 + (TTA)n Simple_repeat Simple_repeat 1 32 0 243 103 0 0 chrX 38083209 38083248 -138890892 + (CAG)n Simple_repeat Simple_repeat 1 39 0 * 525 121 0 0 chrX 38083246 38083329 -138890811 + (GGA)n Simple_repeat Simple_repeat 3 85 0 731 299 30 17 chrX 38083639 38083870 -138890270 + MIR SINE MIR 28 261 -1 1432 25 0 0 chrX 38084758 38084916 -138889224 + L1PA2 LINE L1 5998 6155 0 591 197 262 6 chrX 38085116 38085299 -138888841 - MIR SINE MIR -10 252 23 625 246 16 27 chrX 38085641 38085824 -138888316 - MIR SINE MIR -3 259 79 605 269 7 0 chrX 38086542 38086683 -138887457 + MIR SINE MIR 2 143 -119 2577 67 0 3 chrX 38088605 38088919 -138885221 + AluSq SINE Alu 1 313 0 207 256 215 33 chrX 38088919 38089030 -138885110 - MIR SINE MIR -86 176 40 1075 225 8 46 chrX 38090412 38090674 -138883466 - MIR SINE MIR -10 252 1 404 290 122 36 chrX 38090779 38091000 -138883140 - MIR SINE MIR 0 262 23 711 296 69 4 chrX 38091433 38091666 -138882474 - MIR SINE MIR 0 262 15 1676 157 61 4 chrX 38091849 38091961 -138882179 + AluSx SINE Alu 1 105 -207 318 26 0 0 chrX 38091961 38092000 -138882140 + (CA)n Simple_repeat Simple_repeat 2 40 0 1676 157 61 4 chrX 38092000 38092167 -138881973 + AluSx SINE Alu 105 296 -16 1949 166 0 0 chrX 38092862 38093170 -138880970 + AluJb SINE Alu 5 312 0 881 279 39 0 chrX 38093170 38093399 -138880741 + MIR SINE MIR 19 256 -6 252 200 0 0 chrX 38093601 38093666 -138880474 + (CA)n Simple_repeat Simple_repeat 2 66 0 22 70 0 0 chrX 38095164 38095207 -138878933 + AT_rich Low_complexity Low_complexity 1 43 0 397 303 91 6 chrX 38098463 38098628 -138875512 + MIR SINE MIR 2 180 -82 250 285 260 8 chrX 38098650 38098773 -138875367 + MER5A DNA MER1_type 36 189 0 4906 177 62 14 chrX 38098896 38098980 -138875160 + L1MB7 LINE L1 4277 4356 -1828 2195 102 0 0 chrX 38098980 38099327 -138874813 + AluY SINE Alu 1 347 0 4906 177 62 14 chrX 38099327 38100244 -138873896 + L1MB7 LINE L1 4356 5228 -956 1830 196 24 47 chrX 38100244 38100447 -138873693 - MLT1A2 LTR MaLR 0 374 183 2307 67 0 14 chrX 38100447 38100744 -138873396 + AluY SINE Alu 1 293 -18 1830 196 24 47 chrX 38100744 38100923 -138873217 - MLT1A2 LTR MaLR -191 183 1 4906 177 62 14 chrX 38100923 38101723 -138872417 + L1MB7 LINE L1 5228 6184 0 796 320 19 4 chrX 38101993 38102249 -138871891 + MIR SINE MIR 1 260 -2 189 184 265 0 chrX 38102325 38102374 -138871766 + MIR SINE MIR 63 124 -84 718 267 111 5 chrX 38102418 38102635 -138871505 + MIR SINE MIR 23 262 0 452 255 121 25 chrX 38103237 38103394 -138870746 - L2 LINE L2 0 3313 3142 1503 158 12 0 chrX 38103539 38103786 -138870354 - L1M2 LINE L1 -597 5715 5466 * 2004 158 114 0 chrX 38103780 38104184 -138869956 + L1MA9 LINE L1 5825 6274 -38 238 293 135 61 chrX 38105443 38105700 -138868440 + L2 LINE L2 2779 3042 -271 353 270 143 32 chrX 38105737 38105863 -138868277 + L2 LINE L2 3114 3253 -19 935 336 121 27 chrX 38105919 38106589 -138867551 + L2 LINE L2 2079 2811 -503 277 224 1 69 chrX 38106719 38106806 -138867334 - MLT1I LTR MaLR 0 567 309 2600 184 34 91 chrX 38107014 38107633 -138866507 - MLT1E LTR MaLR 0 593 10 245 186 0 51 chrX 38107633 38107692 -138866448 - MLT1I LTR MaLR -263 146 91 261 298 76 69 chrX 38108416 38108547 -138865593 - L2 LINE L2 -214 3058 2927 1123 193 85 22 chrX 38108605 38109045 -138865095 - MLT1E LTR MaLR -31 562 1 2694 163 65 12 chrX 38109120 38109600 -138864540 + LTR22 LTR ERVK 1 505 -4 210 308 0 31 chrX 38109889 38109954 -138864186 + L2 LINE L2 3134 3196 -76 232 232 0 18 chrX 38110123 38110179 -138863961 + L1ME LINE L1 5710 5764 -357 201 39 0 0 chrX 38110183 38110209 -138863931 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 868 186 7 7 chrX 38110209 38110354 -138863786 - FRAM SINE Alu -31 145 1 979 212 11 0 chrX 38110610 38110794 -138863346 + MER5A DNA MER1_type 1 186 -3 301 283 64 96 chrX 38111148 38111462 -138862678 + L2 LINE L2 100 403 -2911 1035 105 0 0 chrX 38112257 38112390 -138861750 + AluSq/x SINE Alu 1 133 -180 2198 94 3 0 chrX 38112392 38112678 -138861462 + AluY SINE Alu 1 287 -24 34 0 0 0 chrX 38112678 38112712 -138861428 + AT_rich Low_complexity Low_complexity 1 34 0 424 226 89 42 chrX 38112712 38112880 -138861260 - HAL1 LINE L1 -906 1601 1426 272 340 49 32 chrX 38113411 38113596 -138860544 + L2 LINE L2 1176 1363 -1951 2625 189 78 5 chrX 38113760 38114362 -138859778 + L1MC3 LINE L1 1582 2349 -4033 264 30 0 0 chrX 38114362 38114395 -138859745 + (CA)n Simple_repeat Simple_repeat 2 34 0 2625 189 78 5 chrX 38114395 38114450 -138859690 + L1MC3 LINE L1 2349 2399 -3983 1893 301 41 16 chrX 38114452 38115033 -138859107 + L1MDb LINE L1 8 603 -5806 364 181 164 26 chrX 38115129 38115245 -138858895 + L1MB8 LINE L1 6038 6169 -9 9362 173 71 56 chrX 38115249 38118354 -138855786 + L1MC3 LINE L1 4186 7429 -592 271 302 35 0 chrX 38118354 38118440 -138855700 + MLT1F1 LTR MaLR 35 123 -444 9362 173 71 56 chrX 38118440 38118649 -138855491 + L1MC3 LINE L1 7429 7633 -388 2480 76 0 0 chrX 38118649 38118952 -138855188 + AluY SINE Alu 1 303 -8 843 169 43 33 chrX 38118952 38119107 -138855033 + L1ME LINE L1 5428 5587 -579 3182 53 0 0 chrX 38119107 38119501 -138854639 - L1PA7 LINE L1 -2 6152 5759 410 279 14 20 chrX 38119580 38119727 -138854413 + L2 LINE L2 2118 2263 -1051 711 208 0 8 chrX 38119736 38119866 -138854274 + MER45A DNA AcHobo 1 129 -49 28 29 0 0 chrX 38119897 38119932 -138854208 + AT_rich Low_complexity Low_complexity 1 35 0 554 112 0 11 chrX 38119932 38120021 -138854119 - L1P LINE L1 -1136 5010 4923 186 281 16 16 chrX 38120127 38120191 -138853949 - MER5A DNA MER1_type -91 98 35 * 201 219 24 0 chrX 38120162 38120203 -138853937 + MER5A DNA MER1_type 137 178 -11 2089 169 78 30 chrX 38121063 38121536 -138852604 - L1MD2 LINE L1 -3 6356 5861 2822 219 73 21 chrX 38121538 38122267 -138851873 - L1MDb LINE L1 -5185 1224 458 368 238 0 48 chrX 38122312 38122396 -138851744 - L1MDb LINE L1 -6320 89 10 550 128 0 68 chrX 38122720 38122853 -138851287 + L1MB2 LINE L1 6048 6171 0 186 298 0 0 chrX 38123202 38123249 -138850891 + L2 LINE L2 3218 3264 -8 505 284 19 60 chrX 38123361 38123576 -138850564 - MIR SINE MIR -25 237 32 279 352 70 0 chrX 38123955 38124083 -138850057 + L2 LINE L2 3172 3308 -5 265 254 8 45 chrX 38124103 38124237 -138849903 + MER113 DNA MER1_type? 2 130 -391 250 277 15 0 chrX 38124347 38124412 -138849728 + MER113 DNA MER1_type? 456 521 0 460 221 200 0 chrX 38124462 38124607 -138849533 - MER5B DNA MER1_type -4 174 1 651 233 146 32 chrX 38125297 38125516 -138848624 - MIR SINE MIR -3 259 16 287 289 0 12 chrX 38125536 38125619 -138848521 - MIR3 SINE MIR -23 185 104 1226 239 173 31 chrX 38125654 38126132 -138848008 - L2 LINE L2 -3 3310 2765 613 198 161 6 chrX 38126572 38126734 -138847406 + MER5A DNA MER1_type 1 187 -2 14981 198 52 14 chrX 38126788 38126847 -138847293 - L1PB1 LINE L1 -1 6866 6811 2277 101 0 19 chrX 38126847 38127163 -138846977 - AluSx SINE Alu -2 310 1 14981 198 52 14 chrX 38127163 38133750 -138840390 - L1PB1 LINE L1 -56 6811 6 982 211 81 63 chrX 38133765 38133867 -138840273 - L2 LINE L2 -521 2793 2694 2370 85 0 0 chrX 38133867 38134161 -138839979 + AluSc SINE Alu 1 294 -15 982 211 81 63 chrX 38134161 38134377 -138839763 - L2 LINE L2 -620 2694 2466 2268 113 0 0 chrX 38134377 38134677 -138839463 + AluY SINE Alu 1 300 -11 982 211 81 63 chrX 38134677 38134689 -138839451 - L2 LINE L2 -848 2466 2456 386 281 106 19 chrX 38136024 38136184 -138837956 - MIR SINE MIR -43 219 46 756 233 161 9 chrX 38136362 38136585 -138837555 + MIR SINE MIR 6 262 0 228 220 17 17 chrX 38136779 38136838 -138837302 + L2 LINE L2 3214 3272 0 261 316 20 0 chrX 38137198 38137296 -138836844 + L2 LINE L2 2140 2239 -1075 232 111 0 0 chrX 38137298 38137334 -138836806 + MER63 DNA MER1_type 4 39 -891 356 125 31 94 chrX 38137334 38137451 -138836689 - L1M4 LINE L1 -407 5755 5647 559 313 111 16 chrX 38137453 38137696 -138836444 + L2 LINE L2 3007 3272 0 1497 238 45 55 chrX 38138660 38139008 -138835132 + L1ME3A LINE L1 5624 5967 -203 1811 171 3 0 chrX 38139008 38139301 -138834839 + AluJo SINE Alu 5 298 -14 1497 238 45 55 chrX 38139301 38139482 -138834658 + L1ME3A LINE L1 5967 6148 -22 578 298 57 36 chrX 38139520 38139768 -138834372 + MIR SINE MIR 8 260 -2 911 226 40 33 chrX 38139770 38140044 -138834096 - L1MCb LINE L1 -5364 681 406 982 162 94 27 chrX 38140047 38140310 -138833830 + MLT1B LTR MaLR 5 226 -164 1800 234 96 9 chrX 38140310 38140874 -138833266 + L1MD3 LINE L1 5391 6003 -1992 * 2574 156 24 28 chrX 38140407 38140908 -138833232 + L1MB8 LINE L1 5530 6028 -150 543 228 16 0 chrX 38140937 38141064 -138833076 - L1MD3 LINE L1 -34 7961 7833 2507 204 28 15 chrX 38141066 38141605 -138832535 - L1MD2 LINE L1 -216 6143 5598 2081 67 21 0 chrX 38141620 38141905 -138832235 + L1PA14 LINE L1 5869 6159 -2 6380 198 53 17 chrX 38141917 38143874 -138830266 - L1MDa LINE L1 -3580 2960 933 300 276 0 66 chrX 38143909 38143985 -138830155 - L1MDa LINE L1 -6343 197 127 1086 227 59 0 chrX 38143992 38144230 -138829910 - L1MDa LINE L1 -5452 1088 837 575 273 12 12 chrX 38144236 38144401 -138829739 - L1MDa LINE L1 -6357 183 19 591 174 14 14 chrX 38144411 38144555 -138829585 + L1MB8 LINE L1 6033 6176 -2 2186 116 0 17 chrX 38144589 38144891 -138829249 + AluSx SINE Alu 1 297 -15 371 377 52 5 chrX 38145085 38145276 -138828864 - MIR SINE MIR -6 256 57 255 346 108 49 chrX 38145294 38145479 -138828661 + L2 LINE L2 3077 3272 0 8864 224 44 39 chrX 38145609 38148312 -138825828 - L1M4 LINE L1 -886 5260 2542 332 264 16 16 chrX 38348312 38348437 -138625703 + L1M4b LINE L1 2266 2390 -4569 2332 102 3 6 chrX 38348506 38348820 -138625320 + AluSp SINE Alu 1 313 0 2303 106 3 0 chrX 38348854 38349157 -138624983 + AluSx SINE Alu 1 304 -8 26 30 0 0 chrX 38349403 38349436 -138624704 + AT_rich Low_complexity Low_complexity 1 33 0 2970 281 79 47 chrX 38349437 38350738 -138623402 + L1M4 LINE L1 3 1345 -5514 7628 219 33 32 chrX 38350741 38351655 -138622485 + L1M4 LINE L1 3895 4806 -2189 1599 209 70 11 chrX 38351655 38352029 -138622111 + MSTD LTR MaLR 1 396 0 7628 219 33 32 chrX 38352029 38352724 -138621416 + L1M4 LINE L1 4806 5499 -1496 2173 108 15 80 chrX 38352724 38352764 -138621376 + THE1B LTR MaLR 1 42 -322 2342 106 0 3 chrX 38352764 38353075 -138621065 - AluSx SINE Alu -2 310 1 2173 108 15 80 chrX 38353075 38353423 -138620717 + THE1B LTR MaLR 42 364 0 7628 219 33 32 chrX 38353423 38354086 -138620054 + L1M4 LINE L1 5499 6178 -817 2235 108 7 3 chrX 38354086 38354392 -138619748 + AluSg SINE Alu 1 307 -3 7628 219 33 32 chrX 38354392 38354606 -138619534 + L1M4 LINE L1 6178 6390 -605 4659 78 24 0 chrX 38354610 38355234 -138618906 - L1PA10 LINE L1 -4 6164 5526 2128 244 48 33 chrX 38355378 38355963 -138618177 + L1M4b LINE L1 2625 3208 -3749 16338 36 5 0 chrX 38355963 38358699 -138615441 + L1PA4 LINE L1 3414 6152 -3 2128 244 48 33 chrX 38358699 38359190 -138614950 + L1M4b LINE L1 3208 3690 -3267 1917 178 40 0 chrX 38359186 38359562 -138614578 - L1 LINE L1 -1015 5131 4741 * 1442 139 80 51 chrX 38359558 38359933 -138614207 + L1MA7 LINE L1 5903 6288 -3 * 26 0 0 0 chrX 38359933 38359959 -138614181 + AT_rich Low_complexity Low_complexity 1 26 0 675 120 10 0 chrX 38359962 38360084 -138614056 - L1ME LINE L1 -704 5466 5343 456 249 101 29 chrX 38360075 38360284 -138613856 - L1 LINE L1 -2110 4036 3813 * 4819 176 42 17 chrX 38360565 38361467 -138612673 - L1MC3 LINE L1 0 7785 6850 261 0 0 0 chrX 38361467 38361496 -138612644 + (TG)n Simple_repeat Simple_repeat 1 29 0 4819 176 42 17 chrX 38361496 38361671 -138612469 - L1MC3 LINE L1 -935 6850 6681 2020 256 92 65 chrX 38361741 38361809 -138612331 - L1M4c LINE L1 -4571 2388 2323 1862 157 13 16 chrX 38361809 38362115 -138612025 - AluJo SINE Alu -5 307 3 2020 256 92 65 chrX 38362115 38364347 -138609793 - L1M4c LINE L1 -4636 2323 25 215 281 53 0 chrX 38364369 38364426 -138609714 - L2 LINE L2 -5 3308 3249 455 288 50 14 chrX 38364445 38364664 -138609476 - L1ME1 LINE L1 -5 6161 5935 581 315 50 17 chrX 38365293 38365534 -138608606 - MIR SINE MIR -13 249 1 245 278 167 16 chrX 38366204 38366330 -138607810 - MIR SINE MIR -22 240 96 230 242 87 155 chrX 38366553 38366863 -138607277 + L3 LINE CR1 1104 1392 -185 1913 162 0 3 chrX 38367290 38367598 -138606542 + AluJb SINE Alu 2 308 -4 567 329 55 71 chrX 38367702 38368082 -138606058 - L2 LINE L2 -2 3270 2897 2251 86 0 7 chrX 38368631 38368922 -138605218 - AluSx SINE Alu -23 289 1 353 282 135 18 chrX 38370156 38370319 -138603821 + MIR SINE MIR 3 184 -78 1288 168 19 29 chrX 38371864 38372174 -138601966 + MER33 DNA MER1_type 1 307 -17 432 243 133 75 chrX 38372257 38372430 -138601710 + MIR SINE MIR 77 259 -3 441 225 92 33 chrX 38372667 38372787 -138601353 - L2 LINE L2 0 3313 3187 410 310 193 5 chrX 38373240 38373437 -138600703 + MIR SINE MIR 23 256 -6 392 265 81 44 chrX 38373562 38373698 -138600442 - MER63 DNA MER1_type -294 768 2 220 302 0 0 chrX 38373915 38373968 -138600172 + L2 LINE L2 3219 3271 -1 6340 221 68 74 chrX 38374345 38375901 -138598239 - L1MB7 LINE L1 -9 6244 4680 2365 91 0 0 chrX 38375901 38376198 -138597942 + AluSx SINE Alu 1 297 -15 6340 221 68 74 chrX 38376198 38377429 -138596711 - L1MB7 LINE L1 -1573 4680 3443 1801 176 5 57 chrX 38377429 38377833 -138596307 + MLT1B LTR MaLR 1 383 -7 6340 221 68 74 chrX 38377833 38378693 -138595447 - L1MB7 LINE L1 -2810 3443 2493 1664 171 20 40 chrX 38378693 38378997 -138595143 - AluJo SINE Alu -13 299 2 6340 221 68 74 chrX 38378997 38379381 -138594759 - L1MB7 LINE L1 -3760 2493 2108 2275 109 12 0 chrX 38379396 38379725 -138594415 - L1PA14 LINE L1 -2 6159 5827 1526 98 6 66 chrX 38379725 38379929 -138594211 - L1M3 LINE L1 -603 5558 5370 2339 89 7 0 chrX 38379929 38380221 -138593919 - AluSx SINE Alu -18 294 1 1526 98 6 66 chrX 38380221 38380322 -138593818 - L1M3 LINE L1 -791 5370 5265 405 289 58 50 chrX 38380311 38380671 -138593469 - L1MEc LINE L1 -4320 2076 1714 * 2512 271 92 50 chrX 38380665 38383102 -138591038 - L1M4c LINE L1 -4436 2702 11 2623 113 3 3 chrX 38383167 38383531 -138590609 - THE1B LTR MaLR 0 364 1 299 291 154 0 chrX 38384354 38384471 -138589669 + L2 LINE L2 3138 3272 0 312 298 60 68 chrX 38384843 38385209 -138588931 + L1ME LINE L1 4908 5270 -876 530 315 89 14 chrX 38385326 38385685 -138588455 + L1ME LINE L1 5420 5805 -316 340 226 22 15 chrX 38387489 38387626 -138586514 + GA-rich Low_complexity Low_complexity 3 140 0 560 282 108 47 chrX 38390061 38390369 -138583771 + L1ME4a LINE L1 5614 5961 -160 279 0 0 0 chrX 38390369 38390400 -138583740 + (TG)n Simple_repeat Simple_repeat 2 32 0 560 282 108 47 chrX 38390400 38390555 -138583585 + L1ME4a LINE L1 5961 6105 -16 809 227 82 28 chrX 38390622 38390868 -138583272 - MIR SINE MIR 0 262 9 279 273 193 0 chrX 38391138 38391226 -138582914 - L2 LINE L2 0 3272 3168 279 236 18 0 chrX 38391430 38391485 -138582655 - L2 LINE L2 -8 3264 3209 205 237 72 72 chrX 38391538 38391635 -138582505 - MIR SINE MIR 0 262 166 253 312 203 14 chrX 38392035 38392173 -138581967 - MIR SINE MIR -76 186 23 331 302 50 60 chrX 38394267 38394449 -138579691 - MIR SINE MIR -63 199 20 431 290 120 14 chrX 38394712 38394929 -138579211 - MIR SINE MIR 0 262 23 2183 111 10 3 chrX 38395040 38395347 -138578793 - AluJb SINE Alu -3 309 1 541 234 36 55 chrX 38395738 38396012 -138578128 + L1ME4a LINE L1 5652 5920 -201 188 314 0 23 chrX 38396167 38396253 -138577887 + MIR SINE MIR 129 212 -50 188 370 110 23 chrX 38396373 38396546 -138577594 + L2 LINE L2 2560 2747 -567 488 209 209 0 chrX 38396738 38396885 -138577255 + MER5A DNA MER1_type 6 188 -1 930 248 24 16 chrX 38397148 38397402 -138576738 + MIR SINE MIR 5 260 -2 485 373 72 0 chrX 38398807 38398960 -138575180 + MER91A DNA MER1_type 33 196 0 3246 143 19 19 chrX 38399163 38399679 -138574461 - MLT2B1 LTR ERVL -4 516 1 240 259 49 37 chrX 38400157 38400238 -138573902 + L3 LINE CR1 1043 1124 -453 2195 119 3 0 chrX 38400287 38400580 -138573560 + AluSx SINE Alu 1 294 -18 504 250 8 8 chrX 38400810 38400938 -138573202 - MIR SINE MIR -34 228 101 2776 135 2 38 chrX 38400938 38401390 -138572750 + L1MB1 LINE L1 5730 6165 -3 22 0 0 0 chrX 38401394 38401416 -138572724 + AT_rich Low_complexity Low_complexity 1 22 0 4464 199 34 84 chrX 38401468 38401939 -138572201 + L1ME1 LINE L1 4171 4664 -1502 2324 104 0 0 chrX 38401939 38402236 -138571904 - AluSx SINE Alu -15 297 1 4464 199 34 84 chrX 38402236 38402499 -138571641 + L1ME1 LINE L1 4664 4939 -1227 1540 173 3 89 chrX 38402499 38402823 -138571317 - AluJo SINE Alu -16 296 1 4464 199 34 84 chrX 38402823 38404200 -138569940 + L1ME1 LINE L1 4939 6162 -4 13121 214 72 32 chrX 38404289 38405295 -138568845 + L1MB1 LINE L1 1 965 -5027 1972 145 3 10 chrX 38405295 38405605 -138568535 + AluJo SINE Alu 1 308 -4 13121 214 72 32 chrX 38405605 38406780 -138567360 + L1MB1 LINE L1 965 2092 -3900 1737 34 0 10 chrX 38406780 38406986 -138567154 + AluY SINE Alu 96 299 -12 13121 214 72 32 chrX 38406986 38408189 -138565951 + L1MB1 LINE L1 2092 3246 -2746 2321 154 9 0 chrX 38408189 38408534 -138565606 - MER7A DNA MER2_type 0 346 1 13121 214 72 32 chrX 38408534 38409782 -138564358 + L1MB1 LINE L1 3246 4443 -1549 1559 183 0 36 chrX 38409782 38410056 -138564084 - AluJb SINE Alu -20 292 29 13121 214 72 32 chrX 38410056 38410577 -138563563 + L1MB1 LINE L1 4443 4942 -1050 2274 107 0 23 chrX 38410577 38410886 -138563254 + AluSx SINE Alu 1 302 -10 13121 214 72 32 chrX 38410886 38411819 -138562321 + L1MB1 LINE L1 4942 5992 0 342 45 0 0 chrX 38412986 38413030 -138561110 + (CA)n Simple_repeat Simple_repeat 2 45 0 414 204 0 0 chrX 38413231 38413334 -138560806 + (TA)n Simple_repeat Simple_repeat 1 103 0 937 17 0 63 chrX 38413368 38413543 -138560597 + (TA)n Simple_repeat Simple_repeat 1 164 0 934 242 62 12 chrX 38414058 38414302 -138559838 + MIR SINE MIR 4 259 -3 375 295 23 58 chrX 38414506 38414679 -138559461 + L3 LINE CR1 1395 1561 -16 231 284 0 74 chrX 38414917 38414998 -138559142 - MIR3 SINE MIR -36 172 98 229 329 12 12 chrX 38415380 38415462 -138558678 + GA-rich Low_complexity Low_complexity 3 84 0 576 261 144 33 chrX 38415670 38416060 -138558080 + L1MC4a LINE L1 5789 6221 -1587 205 167 28 0 chrX 38416387 38416423 -138557717 + GA-rich Low_complexity Low_complexity 2 38 0 442 290 35 14 chrX 38416561 38416706 -138557434 + MIR SINE MIR 20 167 -95 586 298 34 24 chrX 38416905 38417113 -138557027 + MIR SINE MIR 9 218 -44 437 148 12 0 chrX 38419571 38419652 -138554488 + GA-rich Low_complexity Low_complexity 1 82 0 351 207 0 0 chrX 38421036 38421094 -138553046 - 5S rRNA rRNA -63 58 1 370 171 92 0 chrX 38421280 38421356 -138552784 + MIR SINE MIR 70 152 -110 1759 63 0 0 chrX 38421358 38421565 -138552575 + AluSc SINE Alu 89 295 -14 188 216 118 0 chrX 38421688 38421739 -138552401 + L2 LINE L2 3216 3272 0 306 164 0 0 chrX 38422194 38422249 -138551891 + (ATTG)n Simple_repeat Simple_repeat 1 55 0 482 240 25 50 chrX 38422581 38422702 -138551438 - MIR SINE MIR -61 147 30 614 288 47 38 chrX 38422908 38423120 -138551020 + MIR SINE MIR 20 233 -29 1338 285 121 26 chrX 38426253 38426825 -138547315 + L3 LINE CR1 950 1575 -2 680 194 144 7 chrX 38428363 38428502 -138545638 - FRAM SINE Alu -8 158 1 283 259 0 0 chrX 38428565 38428619 -138545521 - U1 snRNA snRNA -32 133 80 1720 138 44 27 chrX 38429390 38429686 -138544454 + AluJb SINE Alu 1 301 -11 385 362 20 7 chrX 38429714 38429866 -138544274 - MIR3 SINE MIR -39 169 16 207 0 0 0 chrX 38430678 38430701 -138543439 + (A)n Simple_repeat Simple_repeat 1 23 0 462 79 0 0 chrX 38431497 38431560 -138542580 + (CGG)n Simple_repeat Simple_repeat 2 64 0 192 152 0 0 chrX 38432587 38432620 -138541520 + A-rich Low_complexity Low_complexity 2 34 0 489 304 0 59 chrX 38434334 38434538 -138539602 + MIR SINE MIR 21 212 -50 440 311 122 22 chrX 38434833 38435013 -138539127 + MIR3 SINE MIR 2 199 -9 333 0 0 0 chrX 38435119 38435156 -138538984 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chrX 38435733 38435754 -138538386 + AT_rich Low_complexity Low_complexity 1 21 0 2111 94 13 20 chrX 38435918 38436217 -138537923 + AluSg SINE Alu 1 297 -13 184 29 29 29 chrX 38436275 38436309 -138537831 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2191 152 27 25 chrX 38436314 38436722 -138537418 - L1MB1 LINE L1 -17 6151 5743 1936 121 18 25 chrX 38436722 38437167 -138536973 - L1MA9 LINE L1 0 6312 5812 4951 102 40 3 chrX 38437193 38437917 -138536223 - Tigger3(Golem) DNA MER2_type -1 3028 2278 643 213 0 0 chrX 38437908 38438016 -138536124 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 1801 143 19 23 chrX 38438034 38438342 -138535798 - L1M2 LINE L1 -519 5793 5487 694 151 36 0 chrX 38438349 38438488 -138535652 + L1M2 LINE L1 2714 2857 -3992 * 799 143 24 100 chrX 38438483 38438601 -138535539 - L1M2 LINE L1 -1399 4747 4650 2144 97 6 64 chrX 38438601 38438930 -138535210 - AluSg SINE Alu 0 310 1 799 143 24 100 chrX 38438930 38439021 -138535119 - L1M2 LINE L1 -1496 4650 4554 5718 146 27 25 chrX 38439037 38439155 -138534985 + L1MA4 LINE L1 5181 5297 -1003 378 0 0 0 chrX 38439155 38439197 -138534943 + (CA)n Simple_repeat Simple_repeat 2 43 0 5718 146 27 25 chrX 38439197 38439708 -138534432 + L1MA4 LINE L1 5297 5806 -494 1522 184 0 71 chrX 38439708 38440034 -138534106 + AluJo SINE Alu 1 303 -9 5718 146 27 25 chrX 38440034 38440165 -138533975 + L1MA4 LINE L1 5806 5935 -365 2293 94 3 38 chrX 38440165 38440485 -138533655 + AluSc SINE Alu 1 309 0 5718 146 27 25 chrX 38440485 38440841 -138533299 + L1MA4 LINE L1 5935 6299 -1 398 148 40 0 chrX 38440888 38440989 -138533151 + CT-rich Low_complexity Low_complexity 2 106 0 1318 174 13 0 chrX 38440992 38441216 -138532924 - AluJo SINE Alu 0 312 86 2468 90 0 0 chrX 38441248 38441558 -138532582 + AluSq SINE Alu 2 311 -2 308 319 69 17 chrX 38441611 38441727 -138532413 - MIR SINE MIR -20 242 121 360 0 0 0 chrX 38443683 38443723 -138530417 + (TG)n Simple_repeat Simple_repeat 2 41 0 192 40 0 0 chrX 38444535 38444560 -138529580 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 505 322 65 82 chrX 38445046 38445289 -138528851 + L2 LINE L2 2444 2690 -582 1569 193 0 0 chrX 38445289 38445528 -138528612 - MER8 DNA MER2_type 0 239 1 505 322 65 82 chrX 38445528 38446127 -138528013 + L2 LINE L2 2690 3270 -2 420 335 49 30 chrX 38446503 38446706 -138527434 + L2 LINE L2 2849 3055 -217 1227 268 49 6 chrX 38446755 38447080 -138527060 - MLT1K LTR MaLR -2 586 248 287 272 144 67 chrX 38447196 38447257 -138526883 + L2 LINE L2 3076 3131 -141 351 0 0 0 chrX 38447257 38447296 -138526844 + (TG)n Simple_repeat Simple_repeat 2 40 0 287 272 144 67 chrX 38447296 38447414 -138526726 + L2 LINE L2 3131 3269 -3 810 204 113 29 chrX 38447697 38447937 -138526203 + MIR SINE MIR 2 261 -1 775 258 5 16 chrX 38448495 38448689 -138525451 - MIR SINE MIR -19 243 52 1070 31 79 0 chrX 38448704 38448831 -138525309 - MER85 DNA T2_type -2 137 1 474 239 71 39 chrX 38448859 38449014 -138525126 + MIR SINE MIR 103 262 0 453 319 70 25 chrX 38449603 38449888 -138524252 + L1ME4a LINE L1 5548 5845 -276 593 270 25 35 chrX 38450294 38450494 -138523646 + MIR SINE MIR 23 220 -42 2149 146 22 28 chrX 38450495 38450797 -138523343 + MLT1A1 LTR MaLR 1 302 -63 1793 179 0 13 chrX 38450797 38451104 -138523036 - AluJo SINE Alu -9 303 1 2149 146 22 28 chrX 38451104 38451163 -138522977 + MLT1A1 LTR MaLR 302 360 -5 183 214 24 24 chrX 38451165 38451207 -138522933 + L2 LINE L2 3219 3260 -12 * 307 225 50 0 chrX 38451201 38451281 -138522859 + MIR SINE MIR 120 203 -59 1970 137 7 3 chrX 38451738 38452049 -138522091 + AluSq SINE Alu 1 312 0 267 287 57 41 chrX 38452076 38452198 -138521942 - MIR SINE MIR -6 256 133 277 315 167 63 chrX 38452281 38453113 -138521027 + L2 LINE L2 2345 3263 -9 811 231 30 15 chrX 38453252 38453455 -138520685 + L2 LINE L2 3105 3310 -3 252 361 112 39 chrX 38454701 38454864 -138519276 + L2 LINE L2 2516 2666 -648 2105 124 0 0 chrX 38454864 38455178 -138518962 - AluSx SINE Alu 0 314 1 252 361 112 39 chrX 38455178 38455343 -138518797 + L2 LINE L2 2666 2869 -445 974 237 46 50 chrX 38455377 38455638 -138518502 - MIR SINE MIR -6 256 2 184 282 64 39 chrX 38455854 38455932 -138518208 + L2 LINE L2 3201 3280 -33 577 227 73 84 chrX 38456124 38456255 -138517885 - L1MC4 LINE L1 -2 8040 7909 314 45 23 0 chrX 38456255 38456299 -138517841 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 577 227 73 84 chrX 38456299 38456524 -138517616 - L1MC4 LINE L1 -133 7909 7688 329 242 118 50 chrX 38456529 38456690 -138517450 + MIR SINE MIR 64 235 -27 842 256 65 12 chrX 38456712 38456958 -138517182 + MIR SINE MIR 3 261 -1 21 36 0 0 chrX 38457121 38457149 -138516991 + AT_rich Low_complexity Low_complexity 1 28 0 1003 206 36 12 chrX 38458647 38458894 -138515246 - L1MB8 LINE L1 -7 6171 5919 626 238 33 0 chrX 38458914 38459065 -138515075 + MIR SINE MIR 70 225 -37 1700 112 22 0 chrX 38459215 38459439 -138514701 - MER30 DNA MER1_type 0 230 2 435 287 101 42 chrX 38459698 38459935 -138514205 - L3 LINE CR1 -539 1038 788 302 0 26 0 chrX 38460567 38460605 -138513535 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5537 90 9 7 chrX 38460789 38461479 -138512661 - LTR8 LTR ERV1 0 691 1 21821 134 62 64 chrX 38461479 38462344 -138511796 - HUERS-P1 LTR ERV1 0 6263 5398 2401 90 3 0 chrX 38462344 38462644 -138511496 - AluSp SINE Alu -12 301 1 21821 134 62 64 chrX 38462644 38463098 -138511042 - HUERS-P1 LTR ERV1 -865 5398 4945 2235 78 0 11 chrX 38463098 38463404 -138510736 + AluSc SINE Alu 1 303 0 21821 134 62 64 chrX 38463404 38464997 -138509143 - HUERS-P1 LTR ERV1 -1318 4945 3350 2264 119 6 0 chrX 38464997 38465308 -138508832 - AluSp SINE Alu 0 313 1 21821 134 62 64 chrX 38465308 38466250 -138507890 - HUERS-P1 LTR ERV1 -2913 3350 2408 5726 27 2 6 chrX 38466250 38466883 -138507257 + L1PA5 LINE L1 5525 6154 0 21821 134 62 64 chrX 38466883 38467054 -138507086 - HUERS-P1 LTR ERV1 -3855 2408 2238 2271 95 0 10 chrX 38467054 38467348 -138506792 - AluSx SINE Alu -21 291 1 21821 134 62 64 chrX 38467348 38469134 -138505006 - HUERS-P1 LTR ERV1 -4025 2238 1 5215 85 6 54 chrX 38469134 38469860 -138504280 - LTR8 LTR ERV1 0 691 1 866 275 29 16 chrX 38470260 38470419 -138503721 + MIR SINE MIR 6 162 -100 1913 157 0 14 chrX 38470419 38470576 -138503564 - AluJb SINE Alu -22 290 132 300 27 0 0 chrX 38470576 38470613 -138503527 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2183 109 0 3 chrX 38470613 38470898 -138503242 - AluSx SINE Alu -28 284 1 1913 157 0 14 chrX 38470898 38471033 -138503107 - AluJb SINE Alu -178 134 1 866 275 29 16 chrX 38471033 38471117 -138503023 + MIR SINE MIR 162 252 -10 180 242 65 32 chrX 38471122 38471184 -138502956 - L3 LINE CR1 -822 755 692 1271 177 9 14 chrX 38471783 38471998 -138502142 - MER58A DNA MER1_type 0 224 11 1245 299 51 50 chrX 38472058 38472769 -138501371 + L2 LINE L2 2530 3244 -69 265 216 57 11 chrX 38472817 38472905 -138501235 - L1MA10 LINE L1 -2 6332 6241 1500 202 63 27 chrX 38472915 38473246 -138500894 - MER2 DNA MER2_type 0 344 2 241 174 0 0 chrX 38473269 38473315 -138500825 + LTR66 LTR ERVL 394 439 -171 242 284 14 0 chrX 38473328 38473402 -138500738 - L1ME1 LINE L1 -77 6089 6015 6645 200 19 17 chrX 38473514 38473973 -138500167 - L1MB4 LINE L1 0 6678 6221 2372 100 0 0 chrX 38473973 38474273 -138499867 - AluSx SINE Alu -12 300 1 6645 200 19 17 chrX 38474273 38474801 -138499339 - L1MB4 LINE L1 -457 6221 5696 2291 116 0 0 chrX 38474801 38475104 -138499036 - AluSx SINE Alu -9 303 1 6645 200 19 17 chrX 38475104 38476495 -138497645 - L1MB4 LINE L1 -982 5696 4302 1605 245 25 4 chrX 38476490 38476967 -138497173 - L1MB4 LINE L1 -2709 3935 3449 * 316 185 25 37 chrX 38476959 38477040 -138497100 - L1MB4 LINE L1 -5634 908 829 * 723 293 91 56 chrX 38477088 38477274 -138496866 - L1MB4 LINE L1 -5829 713 535 705 26 52 0 chrX 38477274 38477390 -138496750 + (TA)n Simple_repeat Simple_repeat 2 123 0 1579 147 42 53 chrX 38477393 38477678 -138496462 - AluJo SINE Alu -30 282 1 723 293 91 56 chrX 38477678 38478094 -138496046 - L1MB4 LINE L1 -6008 534 86 1609 81 0 27 chrX 38478108 38478194 -138495946 - L1MA3 LINE L1 -3 6302 6215 2452 148 52 47 chrX 38478194 38478620 -138495520 + MSTA LTR MaLR 1 428 0 1609 81 0 27 chrX 38478620 38478754 -138495386 - L1MA3 LINE L1 -90 6215 6088 181 356 0 0 chrX 38478798 38478857 -138495283 - MER5B DNA MER1_type -119 59 1 495 304 92 48 chrX 38480154 38480447 -138493693 - LTR33A LTR ERVL -15 508 203 468 297 67 113 chrX 38480911 38481238 -138492902 + L2 LINE L2 2961 3272 0 1999 189 101 2 chrX 38481604 38482001 -138492139 + MER63B DNA MER1_type 1 436 0 2355 95 0 3 chrX 38482414 38482719 -138491421 - AluSx SINE Alu -8 304 1 671 258 83 39 chrX 38482995 38483224 -138490916 - MIR SINE MIR -22 240 2 266 264 345 9 chrX 38484267 38484377 -138489763 + MER5B DNA MER1_type 1 147 -31 23 0 0 0 chrX 38484548 38484571 -138489569 + AT_rich Low_complexity Low_complexity 1 23 0 276 30 0 0 chrX 38484672 38484705 -138489435 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 30 0 0 chrX 38486407 38486440 -138487700 + AT_rich Low_complexity Low_complexity 1 33 0 2519 113 31 22 chrX 38486725 38487141 -138486999 - L1MA7 LINE L1 -103 6188 5769 4384 96 53 5 chrX 38487156 38487274 -138486866 - L1MA2 LINE L1 0 6304 6193 869 164 0 0 chrX 38487274 38487402 -138486738 - FLAM_C SINE Alu -5 128 1 4384 96 53 5 chrX 38487402 38487919 -138486221 - L1MA2 LINE L1 -111 6193 5638 252 195 0 0 chrX 38488133 38488174 -138485966 - MIR SINE MIR -79 129 89 475 279 76 70 chrX 38488277 38488660 -138485480 + L3 LINE CR1 1177 1561 -16 333 306 90 21 chrX 38489469 38489613 -138484527 + MER5A DNA MER1_type 35 188 -1 312 253 26 102 chrX 38489627 38489831 -138484309 - MIR SINE MIR -25 183 1 270 260 39 13 chrX 38491534 38491611 -138482529 - MIR SINE MIR -70 192 114 999 231 0 34 chrX 38491621 38491855 -138482285 - MIR SINE MIR -2 260 35 2261 107 0 0 chrX 38491913 38492222 -138481918 - AluY SINE Alu -2 309 1 1999 133 44 3 chrX 38492222 38492516 -138481624 - AluJo SINE Alu -6 306 1 385 288 196 0 chrX 38492660 38492813 -138481327 - L2 LINE L2 -1 3271 3089 * 401 318 114 30 chrX 38492794 38493030 -138481110 + MIR SINE MIR 6 261 -1 308 330 0 0 chrX 38493906 38493997 -138480143 - MIR SINE MIR -116 146 56 1267 228 33 22 chrX 38493997 38494489 -138479651 - MLT1E LTR MaLR 0 593 1 313 243 14 0 chrX 38495158 38495228 -138478912 - L2 LINE L2 0 3313 3243 1006 236 26 9 chrX 38495587 38495820 -138478320 - MIR SINE MIR -1 261 25 223 333 25 66 chrX 38495852 38496050 -138478090 - L2 LINE L2 -264 3008 2819 1767 161 9 38 chrX 38496065 38496382 -138477758 + AluJb SINE Alu 1 308 -4 259 257 14 68 chrX 38496444 38496518 -138477622 - L2 LINE L2 -3 3269 3200 471 285 12 30 chrX 38496546 38496711 -138477429 - L2 LINE L2 -179 3093 2932 606 239 0 15 chrX 38497028 38497158 -138476982 - MIR SINE MIR -113 149 22 264 273 73 45 chrX 38497275 38497321 -138476819 + MIR SINE MIR 102 145 -107 1330 271 48 23 chrX 38497321 38497638 -138476502 + MLT1I LTR MaLR 1 332 -77 216 97 0 0 chrX 38497638 38497669 -138476471 + (CA)n Simple_repeat Simple_repeat 2 32 0 1330 271 48 23 chrX 38497669 38497750 -138476390 + MLT1I LTR MaLR 331 409 0 264 273 73 45 chrX 38497750 38497818 -138476322 + MIR SINE MIR 145 212 -40 300 355 9 9 chrX 38498573 38498683 -138475457 - MIR SINE MIR -128 134 25 1048 152 134 172 chrX 38498685 38499074 -138475066 - MLT1A2 LTR MaLR 0 374 1 2285 201 46 0 chrX 38499074 38499491 -138474649 - MLT1A2-int LTR MaLR 0 1735 1300 324 164 0 60 chrX 38499559 38499626 -138474514 - MLT1A2-int LTR MaLR -994 741 679 1845 170 40 54 chrX 38499742 38500362 -138473778 - MLT1A2-int LTR MaLR -629 742 5 2075 197 19 96 chrX 38500366 38500408 -138473732 - MLT2B1 LTR ERVL 0 520 476 1254 95 0 0 chrX 38500408 38500587 -138473553 + (TA)n Simple_repeat Simple_repeat 2 180 0 2075 197 19 96 chrX 38500587 38501107 -138473033 - MLT2B1 LTR ERVL -44 476 1 308 323 121 20 chrX 38501265 38501463 -138472677 + L2 LINE L2 2653 2870 -444 331 307 140 7 chrX 38502757 38502907 -138471233 - MIR SINE MIR -73 189 20 202 200 0 0 chrX 38504021 38504056 -138470084 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 377 376 14 28 chrX 38504081 38504371 -138469769 - L2 LINE L2 -341 2973 2688 966 288 141 9 chrX 38504683 38505214 -138468926 + L2 LINE L2 1684 2284 -1030 12737 100 15 17 chrX 38505214 38506034 -138468106 - Tigger1 DNA MER2_type -1 2417 1596 2175 109 3 16 chrX 38506034 38506338 -138467802 - AluSx SINE Alu -12 300 1 12737 100 15 17 chrX 38506338 38507355 -138466785 - Tigger1 DNA MER2_type -822 1596 585 5905 224 123 51 chrX 38507356 38508615 -138465525 + L1MA4 LINE L1 1 1458 -5751 192 40 0 0 chrX 38508615 38508640 -138465500 + (CACCC)n Simple_repeat Simple_repeat 5 29 0 5905 224 123 51 chrX 38508640 38509439 -138464701 + L1MA4 LINE L1 1458 2198 -5011 * 9577 159 23 10 chrX 38509434 38511022 -138463118 + L1MA4 LINE L1 4628 6244 -964 3895 182 8 48 chrX 38511022 38511774 -138462366 + MER72 LTR ERV1 1 722 0 9577 159 23 10 chrX 38511774 38511935 -138462205 + L1MA4 LINE L1 6244 6401 -807 7203 106 16 16 chrX 38511925 38512412 -138461728 + L1MA1 LINE L1 5016 5502 -800 * 2122 123 30 0 chrX 38512412 38512713 -138461427 + AluSx SINE Alu 1 310 -2 7203 106 16 16 chrX 38512713 38513503 -138460637 + L1MA1 LINE L1 5502 6293 -9 6188 133 17 1 chrX 38513516 38514476 -138459664 + L1MA4 LINE L1 6379 7353 -9 3324 127 30 74 chrX 38514476 38515100 -138459040 - Tigger1 DNA MER2_type -1821 597 1 3839 133 45 23 chrX 38515162 38515898 -138458242 - LTR1B LTR ERV1 0 826 1 191 302 86 17 chrX 38515902 38516018 -138458122 + L2 LINE L2 2358 2481 -833 697 280 98 64 chrX 38516018 38516383 -138457757 + L2 LINE L2 2772 3158 -155 3745 155 75 5 chrX 38516383 38517035 -138457105 - LTR34 LTR ERV1 -1 698 1 697 280 98 64 chrX 38517035 38517193 -138456947 + L2 LINE L2 3158 3309 -4 2237 82 7 3 chrX 38517332 38517623 -138456517 + AluSx SINE Alu 1 292 -20 34 0 0 0 chrX 38518697 38518731 -138455409 + AT_rich Low_complexity Low_complexity 1 34 0 405 282 56 14 chrX 38519228 38519370 -138454770 + MIR SINE MIR 28 175 -87 411 343 10 43 chrX 38519687 38519894 -138454246 - L2 LINE L2 -210 3062 2863 555 348 44 0 chrX 38519914 38520072 -138454068 + MER91A DNA MER1_type 2 166 -30 196 226 69 88 chrX 38520118 38520220 -138453920 + L2 LINE L2 2794 2893 -421 217 139 0 0 chrX 38520735 38520771 -138453369 - L2 LINE L2 -3 3310 3275 548 282 56 42 chrX 38520902 38521118 -138453022 + MIR SINE MIR 5 223 -39 200 298 58 29 chrX 38521265 38521369 -138452771 + L2 LINE L2 3165 3271 -42 * 216 317 85 12 chrX 38521365 38521447 -138452693 + L2 LINE L2 3155 3242 -30 439 110 0 121 chrX 38521453 38521544 -138452596 + MADE1 DNA Mariner 1 80 0 757 236 25 0 chrX 38521548 38521709 -138452431 - MIR SINE MIR -62 200 36 196 259 111 0 chrX 38521723 38521777 -138452363 + L2 LINE L2 3210 3269 -3 301 243 48 19 chrX 38522377 38522480 -138451660 - MIR SINE MIR -49 213 108 2255 222 95 14 chrX 38522691 38523740 -138450400 + L1MB5 LINE L1 2074 3223 -3159 2159 159 9 61 chrX 38523822 38524141 -138449999 + MER54A LTR ERVL 494 787 -114 2338 90 0 7 chrX 38524141 38524440 -138449700 + AluSg SINE Alu 1 297 -13 2159 159 9 61 chrX 38524440 38524547 -138449593 + MER54A LTR ERVL 787 898 -3 6955 55 1 2 chrX 38524551 38525363 -138448777 + L1PA6 LINE L1 5344 6154 0 2897 249 85 17 chrX 38525412 38526405 -138447735 + L1MB5 LINE L1 3244 4303 -2079 2812 188 28 7 chrX 38526613 38527188 -138446952 + L1MB5 LINE L1 5593 6179 -231 2392 213 108 12 chrX 38527199 38527792 -138446348 - MER21B LTR ERV1 -1 862 213 438 181 0 0 chrX 38527790 38527862 -138446278 - MER21B LTR ERV1 -779 84 13 * 1230 166 18 22 chrX 38527888 38528111 -138446029 + L1MB5 LINE L1 6181 6402 -8 2021 245 68 35 chrX 38528160 38528967 -138445173 - L1MDa LINE L1 -4189 2351 1518 * 5791 127 1 2 chrX 38528966 38529812 -138444328 + L1PA15 LINE L1 5315 6159 -6 991 268 77 48 chrX 38529922 38530232 -138443908 - MLT1E LTR MaLR -150 443 125 22036 64 1 9 chrX 38530373 38533223 -138440917 - L1P LINE L1 -3318 2828 2 12400 127 27 34 chrX 38533223 38535865 -138438275 - L1P3 LINE L1 -3743 2718 9 1022 231 17 37 chrX 38536133 38536181 -138437959 - L1M4 LINE L1 -1577 4569 4522 3694 92 34 4 chrX 38536181 38536679 -138437461 + LTR10D LTR ERV1 1 513 0 1022 231 17 37 chrX 38536679 38536928 -138437212 - L1M4 LINE L1 -1624 4522 4278 238 302 48 0 chrX 38537168 38537231 -138436909 - MIR SINE MIR -62 146 81 4244 191 70 21 chrX 38537387 38538103 -138436037 + L1MB8 LINE L1 4441 5121 -1057 2308 107 0 10 chrX 38538103 38538411 -138435729 + AluSp SINE Alu 1 305 -8 4244 191 70 21 chrX 38538411 38539302 -138434838 + L1MB8 LINE L1 5121 6131 -47 2092 133 33 5 chrX 38539430 38539812 -138434328 - L1M2 LINE L1 -669 5622 5231 1739 229 48 77 chrX 38539810 38540431 -138433709 - L1M3e LINE L1 -6251 779 177 * 984 218 0 15 chrX 38540845 38541051 -138433089 + AluJo SINE Alu 106 308 -4 3571 213 167 55 chrX 38541622 38542803 -138431337 - L1M2b LINE L1 -5896 1313 1 11549 108 19 15 chrX 38542829 38544533 -138429607 + Tigger1 DNA MER2_type 585 2295 -123 192 234 0 21 chrX 38544866 38544913 -138429227 + MER5A DNA MER1_type 59 104 -85 781 224 73 41 chrX 38545018 38545264 -138428876 - MIR SINE MIR -4 258 5 268 289 44 11 chrX 38545689 38545779 -138428361 - L2 LINE L2 -17 3296 3204 717 312 72 24 chrX 38545895 38546299 -138427841 - LTR16A LTR ERVL -7 443 2 305 271 51 17 chrX 38546958 38547076 -138427064 + L2 LINE L2 2974 3095 -177 315 250 100 0 chrX 38547975 38548055 -138426085 + L2 LINE L2 3185 3272 0 498 297 27 14 chrX 38548918 38549066 -138425074 + L3 LINE CR1 1407 1556 -21 3721 265 87 30 chrX 38549542 38550359 -138423781 - L1M4 LINE L1 -4867 1675 740 288 0 0 0 chrX 38550359 38550391 -138423749 + (TG)n Simple_repeat Simple_repeat 2 33 0 3721 265 87 30 chrX 38550391 38551018 -138423122 - L1M4 LINE L1 -5802 740 150 2066 236 58 99 chrX 38551013 38552103 -138422037 + L1M4 LINE L1 2174 3218 -2928 * 18872 77 32 25 chrX 38552208 38553126 -138421014 + MER61A-int LTR ERV1 2557 3467 -1750 2436 65 3 3 chrX 38553126 38553434 -138420706 - AluSx SINE Alu -4 308 1 18872 77 32 25 chrX 38553434 38555157 -138418983 + MER61A-int LTR ERV1 3467 5217 0 1831 120 120 10 chrX 38555157 38555466 -138418674 + MER61A LTR ERV1 1 343 0 1041 210 24 8 chrX 38555466 38555718 -138418422 + L1M4 LINE L1 4969 5224 -922 417 272 37 44 chrX 38556644 38556780 -138417360 + MIR SINE MIR 119 253 -9 5583 147 28 0 chrX 38556943 38557823 -138416317 + Tigger1 DNA MER2_type 1 905 -1513 1947 114 4 4 chrX 38557923 38558194 -138415946 - AluSx SINE Alu -41 271 1 368 236 254 33 chrX 38558247 38558439 -138415701 - MIR SINE MIR -17 245 19 2411 56 3 0 chrX 38558677 38559005 -138415135 + AluSp SINE Alu 1 329 0 467 213 35 57 chrX 38560247 38560388 -138413752 - MIR SINE MIR -120 142 5 1270 158 78 89 chrX 38560389 38560938 -138413202 + Tigger2 DNA MER2_type 1 543 -2175 556 171 0 0 chrX 38560938 38561020 -138413120 + AluJ/FRAM SINE Alu 214 295 -17 1274 147 30 0 chrX 38561053 38561250 -138412890 + Tigger2 DNA MER2_type 552 754 -1964 950 171 149 22 chrX 38561315 38561496 -138412644 - AluJb SINE Alu -23 289 86 1446 142 9 0 chrX 38561496 38561714 -138412426 - AluJo SINE Alu -92 220 1 647 175 63 0 chrX 38561714 38561840 -138412300 + Tigger2 DNA MER2_type 2492 2625 -93 1203 204 0 42 chrX 38561841 38562081 -138412059 + MER8 DNA MER2_type 2 231 -8 513 115 39 115 chrX 38562088 38562192 -138411948 + Tigger2 DNA MER2_type 2623 2718 0 444 229 0 79 chrX 38562208 38562348 -138411792 - MER112 DNA MER1_type -131 129 1 323 276 96 27 chrX 38562351 38562477 -138411663 - L1ME LINE L1 -522 5640 5505 317 255 75 107 chrX 38562528 38562727 -138411413 - L1ME LINE L1 -647 5517 5325 291 299 179 0 chrX 38562745 38562862 -138411278 - MIR SINE MIR -77 185 48 458 248 28 48 chrX 38563002 38563147 -138410993 - MIR SINE MIR -52 210 69 202 290 14 29 chrX 38563153 38563222 -138410918 - MIR SINE MIR -115 93 26 767 204 68 0 chrX 38563572 38563734 -138410406 + MER5B DNA MER1_type 6 178 0 342 352 91 17 chrX 38563769 38563945 -138410195 - MER5A DNA MER1_type 0 189 1 313 305 46 33 chrX 38564429 38564580 -138409560 - L2 LINE L2 -515 2799 2647 560 310 44 41 chrX 38566162 38566501 -138407639 + MER110-int LTR ERV1 158 497 -4150 281 25 25 0 chrX 38566636 38566676 -138407464 - L1P LINE L1 -998 5148 5108 14583 90 3 38 chrX 38566677 38568898 -138405242 - L1P LINE L1 -1126 5020 2878 1321 218 22 80 chrX 38568998 38569411 -138404729 - MLT2B3 LTR ERVL -161 393 5 198 0 0 0 chrX 38570310 38570332 -138403808 + (TG)n Simple_repeat Simple_repeat 2 23 0 2280 79 0 41 chrX 38570695 38571012 -138403128 - AluY SINE Alu -7 304 1 2920 6 6 0 chrX 38571018 38571333 -138402807 - AluYb8 SINE Alu -1 317 1 2062 75 7 11 chrX 38571543 38571850 -138402290 + AluY SINE Alu 12 317 0 1109 297 70 34 chrX 38571850 38572404 -138401736 + L2 LINE L2 2737 3309 -4 383 203 248 20 chrX 38572679 38572832 -138401308 + L2 LINE L2 3121 3308 -5 182 283 67 0 chrX 38572851 38572911 -138401229 + MIR SINE MIR 120 183 -79 835 228 0 0 chrX 38573393 38573555 -138400585 + MLT1A2 LTR MaLR 1 162 -212 1804 140 11 7 chrX 38573607 38573879 -138400261 + AluJo SINE Alu 13 285 -27 957 248 43 26 chrX 38673915 38674060 -138300080 - L1M1 LINE L1 -7246 319 178 536 117 0 0 chrX 38674060 38674137 -138300003 - MADE1 DNA Mariner 0 80 4 957 248 43 26 chrX 38674137 38674294 -138299846 - L1M1 LINE L1 -7387 178 12 * 5089 230 36 10 chrX 38674279 38677591 -138296549 - L1 LINE L1 -2877 3451 71 771 282 126 66 chrX 38677723 38678414 -138295726 - L1M4 LINE L1 -913 5233 4492 2216 120 0 10 chrX 38678414 38678715 -138295425 - AluSx SINE Alu -14 298 1 771 282 126 66 chrX 38678715 38678778 -138295362 - L1M4 LINE L1 -1654 4492 4434 1110 314 21 33 chrX 38679440 38679953 -138294187 - HERV16 LTR ERVL -3428 1568 1062 320 328 14 141 chrX 38679953 38680380 -138293760 + L2 LINE L2 2838 3210 -62 24 32 0 0 chrX 38680755 38680786 -138293354 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chrX 38682053 38682075 -138292065 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1266 254 8 22 chrX 38683117 38683519 -138290621 + L1ME LINE L1 5380 5775 -395 1388 142 0 9 chrX 38684718 38684929 -138289211 - AluJb SINE Alu -17 295 87 3512 151 8 29 chrX 38685177 38685768 -138288372 + L1PA16 LINE L1 5588 6166 0 2234 68 50 0 chrX 38685861 38686142 -138287998 - AluY SINE Alu -16 295 1 545 253 41 54 chrX 38686247 38686572 -138287568 - LTR40a LTR ERVL -41 478 119 372 330 58 49 chrX 38686823 38687272 -138286868 + L1M4 LINE L1 4071 4523 -1623 226 291 19 39 chrX 38687424 38687527 -138286613 + L1M4 LINE L1 4746 4846 -1300 252 0 0 0 chrX 38687534 38687562 -138286578 + (CA)n Simple_repeat Simple_repeat 1 28 0 2166 224 54 18 chrX 38688774 38689323 -138284817 - MER77 LTR ERV1 -4 601 54 743 187 52 19 chrX 38691816 38691971 -138282169 + MLT1A2 LTR MaLR 2 161 -213 247 229 114 57 chrX 38693211 38693316 -138280824 + MLT1A2 LTR MaLR 330 440 -214 219 69 0 0 chrX 38693520 38693549 -138280591 + (T)n Simple_repeat Simple_repeat 1 29 0 314 321 112 25 chrX 38695692 38695888 -138278252 - L1MC4 LINE L1 -420 7622 7410 223 293 111 30 chrX 38695891 38696089 -138278051 + L2 LINE L2 2647 2860 -454 207 139 0 0 chrX 38696485 38696521 -138277619 + (TG)n Simple_repeat Simple_repeat 2 37 0 2955 162 46 22 chrX 38696930 38696973 -138277167 + LTR49 LTR ERV1 11 51 -544 2346 95 0 0 chrX 38696973 38697268 -138276872 - AluY SINE Alu -16 295 1 2955 162 46 22 chrX 38697268 38697825 -138276315 + LTR49 LTR ERV1 51 595 0 3965 171 75 18 chrX 38697826 38698564 -138275576 + LTR49-int LTR ERV1 1 780 -5551 252 196 45 125 chrX 38698595 38698707 -138275433 + LTR49-int LTR ERV1 1154 1256 -5502 * 2516 216 58 59 chrX 38698705 38698909 -138275231 + LTR49-int LTR ERV1 782 985 -5346 4516 52 2 0 chrX 38698909 38699460 -138274680 + L1PA7 LINE L1 5618 6169 0 2516 216 58 59 chrX 38699460 38700373 -138273767 + LTR49-int LTR ERV1 985 2103 -4228 544 202 48 58 chrX 38700383 38700587 -138273553 + LTR49-int LTR ERV1 1150 3129 -3202 * 764 249 40 26 chrX 38700542 38700815 -138273325 + LTR57-int LTR ERVL 1234 1510 -3833 265 108 0 0 chrX 38701038 38701075 -138273065 + LTR49 LTR ERV1 175 211 -384 2138 187 78 2 chrX 38701421 38701817 -138272323 + MSTB LTR MaLR 1 426 0 2338 178 83 4 chrX 38702047 38702526 -138271614 + L1MB3 LINE L1 5639 6155 -28 1539 192 40 21 chrX 38702527 38702853 -138271287 + L1MB5 LINE L1 5803 6131 -49 2479 84 3 0 chrX 38702853 38703155 -138270985 + L1PA8 LINE L1 5852 6163 -9 1539 192 40 21 chrX 38703155 38703191 -138270949 + L1MB5 LINE L1 6131 6165 -15 1667 231 63 43 chrX 38703763 38704252 -138269888 - MER21B LTR ERV1 -48 815 317 4464 174 35 50 chrX 38705293 38706261 -138267879 - LTR13 LTR ERVK 0 954 1 1999 200 49 92 chrX 38707099 38707674 -138266466 - MLT2B3 LTR ERVL 0 554 5 22 35 0 0 chrX 38708663 38708692 -138265448 + AT_rich Low_complexity Low_complexity 1 29 0 476 301 59 0 chrX 38708930 38709169 -138264971 - L1ME3A LINE L1 -223 5947 5695 1034 180 101 0 chrX 38709212 38709440 -138264700 + Tigger6 DNA MER2_type 1347 1597 0 420 296 82 15 chrX 38709452 38709719 -138264421 - L1ME3A LINE L1 -1430 4716 4432 * 426 154 0 0 chrX 38709699 38709764 -138264376 - MLT1C-int LTR MaLR -1306 65 1 1904 180 123 26 chrX 38709765 38710188 -138263952 - MLT1C LTR MaLR -3 464 1 468 269 24 42 chrX 38710271 38710438 -138263702 + LTR41 LTR ERVL 9 172 -601 311 183 42 28 chrX 38711101 38711172 -138262968 + LTR41 LTR ERVL 693 764 -9 994 311 111 16 chrX 38711321 38712177 -138261963 - L1ME3A LINE L1 -1878 4268 3332 260 224 122 59 chrX 38712422 38712725 -138261415 - L1M4 LINE L1 -1426 4720 4399 1191 308 14 28 chrX 38712862 38713290 -138260850 + L1M3a LINE L1 1 422 -5533 308 350 32 6 chrX 38713509 38713666 -138260474 + L1M3a LINE L1 544 704 -5251 * 2588 288 48 31 chrX 38713651 38714890 -138259250 + L1MA7 LINE L1 302 1175 -4780 922 209 38 25 chrX 38714888 38715123 -138259017 + L1MA7 LINE L1 2016 2253 -3781 * 5176 154 29 43 chrX 38715125 38717103 -138257037 + L1MA7 LINE L1 3670 6175 -4 324 285 33 40 chrX 38717613 38717764 -138256376 + L1ME2 LINE L1 5734 5883 -281 242 268 62 18 chrX 38717873 38717985 -138256155 + L1MC4a LINE L1 5860 5976 -1832 358 274 33 75 chrX 38718154 38718366 -138255774 + HAL1b LINE L1 1109 1311 -37 332 323 60 29 chrX 38718509 38718825 -138255315 + L1 LINE L1 3931 4256 -1890 624 117 48 0 chrX 38718834 38718937 -138255203 - L1MA9 LINE L1 0 7731 7624 2674 141 39 5 chrX 38718937 38719349 -138254791 - MSTB LTR MaLR 0 426 1 9436 158 33 16 chrX 38719362 38720972 -138253168 - MSTB-int LTR MaLR -14 1637 1 2592 158 39 5 chrX 38720972 38721384 -138252756 - MSTB LTR MaLR 0 426 1 4479 160 42 23 chrX 38721384 38721429 -138252711 - L1MA9 LINE L1 -103 7628 7585 186 43 0 0 chrX 38721429 38721452 -138252688 + (TG)n Simple_repeat Simple_repeat 2 24 0 4479 160 42 23 chrX 38721452 38721853 -138252287 - L1MA9 LINE L1 -146 7585 7193 1616 188 44 44 chrX 38721853 38722194 -138251946 - MER2 DNA MER2_type -2 342 2 4479 160 42 23 chrX 38722194 38722603 -138251537 - L1MA9 LINE L1 -538 7193 6756 2102 154 73 18 chrX 38722627 38722970 -138251170 - THE1B LTR MaLR -2 362 1 12208 88 17 8 chrX 38722971 38724536 -138249604 - THE1B-int LTR MaLR -1 1579 1 607 147 0 11 chrX 38724536 38724631 -138249509 - THE1B LTR MaLR 0 375 282 406 39 0 19 chrX 38724612 38724664 -138249476 - THE1B LTR MaLR -313 51 1 * 2767 177 86 8 chrX 38724664 38725287 -138248853 - L1MA9 LINE L1 -811 6754 5967 287 175 0 0 chrX 38725327 38725390 -138248750 - L1MA9 LINE L1 -1826 5739 5677 749 226 0 0 chrX 38725409 38725542 -138248598 + FLAM_C SINE Alu 1 133 0 3439 248 48 24 chrX 38725567 38726996 -138247144 - L1MA9 LINE L1 -2928 4637 3157 1978 154 3 0 chrX 38726996 38727289 -138246851 - AluSx SINE Alu -16 296 3 3439 248 48 24 chrX 38727289 38727659 -138246481 - L1MA9 LINE L1 -4408 3157 2797 232 178 22 0 chrX 38727684 38727729 -138246411 + L1 LINE L1 4282 4327 -1819 4954 178 26 31 chrX 38727746 38728846 -138245294 + L1 LINE L1 4302 5396 -750 * 8757 43 20 2 chrX 38728841 38728936 -138245204 - L1PA14 LINE L1 -1034 5112 5020 6532 88 16 15 chrX 38728936 38729297 -138244843 + L1PA14 LINE L1 5130 5489 -672 2293 101 0 3 chrX 38729297 38729595 -138244545 + AluY SINE Alu 1 297 -14 6532 88 16 15 chrX 38729595 38730264 -138243876 + L1PA14 LINE L1 5489 6161 0 8757 43 20 2 chrX 38730264 38731246 -138242894 - L1PA3 LINE L1 -1126 5020 4015 8326 19 0 0 chrX 38731247 38732413 -138241727 + L1PA3 LINE L1 4990 6155 0 2473 231 98 42 chrX 38732420 38733291 -138240849 + L1ME LINE L1 1631 2455 -4085 2524 60 3 0 chrX 38733291 38733592 -138240548 + AluY SINE Alu 1 302 -9 2473 231 98 42 chrX 38733592 38733800 -138240340 + L1ME LINE L1 2455 2650 -3890 2441 124 0 16 chrX 38733836 38734206 -138239934 + THE1B LTR MaLR 1 364 0 10229 98 49 38 chrX 38734206 38735770 -138238370 + THE1B-int LTR MaLR 1 1580 0 2119 130 28 14 chrX 38735770 38736123 -138238017 + THE1B LTR MaLR 1 358 -6 541 178 116 39 chrX 38736136 38736265 -138237875 + MSTD LTR MaLR 258 396 0 349 325 136 53 chrX 38736335 38736769 -138237371 + L1M4 LINE L1 3769 4238 -1908 23 33 0 0 chrX 38737678 38737708 -138236432 + AT_rich Low_complexity Low_complexity 1 30 0 1785 160 0 42 chrX 38738029 38738335 -138235805 - AluJb SINE Alu -19 293 1 338 284 32 6 chrX 38738362 38738544 -138235596 + HAL1b LINE L1 339 1606 -827 1030 154 6 0 chrX 38738625 38738807 -138235333 - L1MB1 LINE L1 -1 6167 5985 1738 175 21 16 chrX 38738813 38739190 -138234950 - L1MB1 LINE L1 -232 5936 5558 1309 177 7 4 chrX 38739203 38739576 -138234564 + L1M3 LINE L1 5118 5492 -676 371 180 11 11 chrX 38739577 38739666 -138234474 + L1ME LINE L1 3033 3121 -3419 303 213 7 53 chrX 38740015 38740165 -138233975 - L1MC5 LINE L1 -184 7777 7635 7575 24 5 0 chrX 38740744 38742117 -138232023 + L1PA4 LINE L1 4771 6147 -8 921 223 14 105 chrX 38742300 38742445 -138231695 + L1ME LINE L1 5736 5893 -671 2178 113 10 0 chrX 38742445 38742747 -138231393 + AluY SINE Alu 1 305 -6 921 223 14 105 chrX 38742747 38742964 -138231176 + L1ME LINE L1 5893 6065 -499 334 329 116 14 chrX 38743567 38743774 -138230366 + L2 LINE L2 2743 2970 -344 219 234 32 75 chrX 38743968 38744062 -138230078 + L2 LINE L2 3178 3267 -5 404 277 80 100 chrX 38744576 38744687 -138229453 + L2 LINE L2 2815 2927 -386 9965 172 25 25 chrX 38744687 38746076 -138228064 - L1PA14 LINE L1 -17 6144 4758 2128 133 3 0 chrX 38746076 38746385 -138227755 - AluSx SINE Alu -2 310 1 9965 172 25 25 chrX 38746385 38747881 -138226259 - L1PA14 LINE L1 -1403 4758 3243 404 277 80 100 chrX 38747881 38748180 -138225960 + L2 LINE L2 2927 3217 -96 460 353 92 28 chrX 38748522 38748553 -138225587 + L2 LINE L2 2633 2661 -653 3156 44 7 7 chrX 38748553 38748959 -138225181 + L1PA7 LINE L1 5749 6154 0 460 353 92 28 chrX 38748959 38749244 -138224896 + L2 LINE L2 2661 2969 -345 213 277 15 31 chrX 38749385 38749450 -138224690 + L2 LINE L2 3208 3271 -1 204 339 0 9 chrX 38749614 38749726 -138224414 + (TCCA)n Simple_repeat Simple_repeat 1 111 0 265 226 9 9 chrX 38749740 38749846 -138224294 + (TCCA)n Simple_repeat Simple_repeat 2 107 0 442 339 6 0 chrX 38749923 38750100 -138224040 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 305 224 8 67 chrX 38751069 38751203 -138222937 + CT-rich Low_complexity Low_complexity 4 129 0 326 185 23 31 chrX 38751216 38751346 -138222794 + CT-rich Low_complexity Low_complexity 5 133 0 1644 130 0 16 chrX 38751820 38752074 -138222066 - MER1B DNA MER1_type -89 250 1 281 309 72 10 chrX 38752362 38752556 -138221584 - L1ME LINE L1 -419 5702 5497 301 345 28 14 chrX 38752572 38752714 -138221426 - MIR SINE MIR -101 161 18 2187 110 44 47 chrX 38753278 38753643 -138220497 - THE1B LTR MaLR 0 364 1 546 318 43 35 chrX 38754351 38754606 -138219534 + MIR SINE MIR 2 258 -4 3751 31 0 0 chrX 38755294 38755775 -138218365 - L1PA4 LINE L1 -794 5352 4872 6871 21 0 1 chrX 38755775 38756610 -138217530 + L1PA4 LINE L1 5355 6155 0 1439 176 16 64 chrX 38756741 38757117 -138217023 - LTR49-int LTR ERV1 -3307 3024 2667 371 159 0 0 chrX 38757117 38757186 -138216954 - L1PA16 LINE L1 -5 6161 6093 232 297 102 31 chrX 38757454 38757582 -138216558 - L2 LINE L2 -10 3303 3167 196 287 178 16 chrX 38757636 38757765 -138216375 - MIR SINE MIR -82 180 31 196 222 22 0 chrX 38758472 38758517 -138215623 + MIR SINE MIR 67 112 -150 28 0 0 0 chrX 38758647 38758675 -138215465 + AT_rich Low_complexity Low_complexity 1 28 0 2095 66 103 0 chrX 38759325 38759596 -138214544 + AluSp SINE Alu 1 299 -14 402 273 142 6 chrX 38759917 38760100 -138214040 + LTR40c LTR ERVL 152 359 -106 565 253 86 0 chrX 38760614 38760776 -138213364 - MIR SINE MIR -22 240 65 26 50 0 0 chrX 38760982 38761022 -138213118 + AT_rich Low_complexity Low_complexity 1 40 0 256 293 29 29 chrX 38761345 38761485 -138212655 + L2 LINE L2 2839 2978 -294 2138 181 56 52 chrX 38761907 38762405 -138211735 + MLT1D LTR MaLR 5 504 -1 661 118 31 16 chrX 38762406 38762533 -138211607 + MLT1D-int LTR MaLR 1 129 -1242 276 267 23 0 chrX 38762537 38762623 -138211517 + MLT1D-int LTR MaLR 1260 1347 -24 1716 177 79 48 chrX 38762627 38763045 -138211095 + MLT1D LTR MaLR 1 431 -74 22 0 0 0 chrX 38763419 38763441 -138210699 + AT_rich Low_complexity Low_complexity 1 22 0 2324 173 11 11 chrX 38763604 38764044 -138210096 + L1M1 LINE L1 2 441 -6768 11985 211 43 40 chrX 38764097 38765931 -138208209 + L1M1 LINE L1 1231 3057 -4308 1774 179 0 52 chrX 38765931 38766255 -138207885 + AluJo SINE Alu 3 309 -3 11985 211 43 40 chrX 38766255 38768434 -138205706 + L1M1 LINE L1 3057 5227 -2138 786 154 31 8 chrX 38768434 38768564 -138205576 - FLAM_C SINE Alu 0 133 1 11985 211 43 40 chrX 38768564 38769063 -138205077 + L1M1 LINE L1 5227 5723 -1642 569 157 0 22 chrX 38769063 38769152 -138204988 + AluS SINE Alu 2 88 -225 11985 211 43 40 chrX 38769152 38770091 -138204049 + L1M1 LINE L1 5723 6867 -498 1458 173 83 0 chrX 38770091 38770369 -138203771 + MSTB LTR MaLR 1 301 -125 1666 195 96 6 chrX 38770371 38770735 -138203405 - MSTB LTR MaLR -29 397 1 3924 217 71 4 chrX 38770739 38771656 -138202484 - L1M2 LINE L1 -5093 1756 779 2125 223 23 19 chrX 38771783 38772196 -138201944 - L1M2 LINE L1 -6362 487 70 2181 139 19 14 chrX 38772196 38772556 -138201584 + THE1B LTR MaLR 1 362 -2 2125 223 23 19 chrX 38772556 38772627 -138201513 - L1M2 LINE L1 -6779 70 1 * 11907 197 40 12 chrX 38772617 38774446 -138199694 + L1MA9 LINE L1 2121 3898 -2414 17244 29 0 1 chrX 38774446 38777285 -138196855 + L1PA3 LINE L1 3319 6155 0 11907 197 40 12 chrX 38777285 38779524 -138194616 + L1MA9 LINE L1 3898 6312 0 1670 257 206 9 chrX 38779526 38780410 -138193730 - L1MEc LINE L1 -1578 4637 3580 198 0 0 0 chrX 38780410 38780432 -138193708 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6281 26 0 3 chrX 38780432 38781208 -138192932 - L1PA3 LINE L1 -18 6137 5364 1852 259 85 30 chrX 38781203 38781693 -138192447 - L1MEc LINE L1 -2636 3579 3117 * 243 0 0 0 chrX 38781693 38781720 -138192420 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 253 0 0 0 chrX 38781719 38781747 -138192393 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 1852 259 85 30 chrX 38781720 38781747 -138192393 - L1MEc LINE L1 -3098 3117 3093 2232 79 0 4 chrX 38781747 38782026 -138192114 - AluSc SINE Alu -1 305 1 1852 259 85 30 chrX 38782026 38782529 -138191611 - L1MEc LINE L1 -3122 3093 2530 646 282 50 31 chrX 38782556 38783013 -138191127 - L1MEc LINE L1 -4706 1690 1225 2477 288 56 7 chrX 38783015 38783994 -138190146 - L1MEc LINE L1 -5223 1173 147 189 267 100 44 chrX 38784000 38784090 -138190050 + L2 LINE L2 3149 3243 -70 180 280 64 56 chrX 38784128 38784253 -138189887 - MIR SINE MIR -72 190 65 352 291 39 0 chrX 38785577 38785680 -138188460 - L2 LINE L2 -30 3242 3136 239 246 0 0 chrX 38786150 38786211 -138187929 - L2 LINE L2 -56 3257 3197 11361 22 0 0 chrX 38787285 38789385 -138184755 - L1PA3 LINE L1 -4 6151 4063 911 212 24 9 chrX 38789523 38789735 -138184405 + L1M4 LINE L1 4 218 -6324 * 1425 193 14 14 chrX 38789728 38790085 -138184055 + L1M4 LINE L1 1011 1367 -5175 * 41324 37 5 3 chrX 38790084 38796154 -138177986 + L1PA3 LINE L1 74 6155 0 1752 219 67 43 chrX 38796131 38796778 -138177362 + L1M4 LINE L1 826 1487 -4661 * 846 286 47 20 chrX 38796801 38797353 -138176787 + L1M4 LINE L1 2180 2746 -3900 277 284 0 0 chrX 38797386 38797481 -138176659 + L1M4 LINE L1 4617 4711 -1435 1914 238 7 2 chrX 38797533 38798076 -138176064 + L1M4 LINE L1 2752 3297 -3347 * 4079 214 34 19 chrX 38798070 38799839 -138174301 + L1M4 LINE L1 4500 6290 -392 1369 210 70 21 chrX 38799841 38800226 -138173914 - LTR52 LTR ERVL -5 416 13 1152 209 173 9 chrX 38800263 38800821 -138173319 + LTR50 LTR ERVL 4 751 -44 3349 199 68 2 chrX 38800870 38801920 -138172220 - LTR52-int LTR ERVL -23 3533 2368 1815 183 6 11 chrX 38801925 38802274 -138171866 + MLT2C1 LTR ERVL 3 349 -48 389 217 0 17 chrX 38802293 38802408 -138171732 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 35 0 0 0 chrX 38802430 38802465 -138171675 + AT_rich Low_complexity Low_complexity 1 35 0 384 22 0 0 chrX 38802477 38802522 -138171618 + (CA)n Simple_repeat Simple_repeat 2 46 0 1816 190 20 11 chrX 38802523 38802875 -138171265 - LTR52-int LTR ERVL -1656 1900 1546 893 206 59 9 chrX 38803083 38803302 -138170838 - LTR52-int LTR ERVL -1999 1557 1328 269 149 21 0 chrX 38803399 38803446 -138170694 + LTR52-int LTR ERVL 1348 1395 -2161 53 17 0 0 chrX 38803469 38803529 -138170611 + AT_rich Low_complexity Low_complexity 1 60 0 771 95 29 0 chrX 38803556 38803802 -138170338 + (TA)n Simple_repeat Simple_repeat 1 253 0 3017 67 9 6 chrX 38803802 38804217 -138169923 - MLT2A1 LTR ERVL -34 481 1 1050 179 52 68 chrX 38804217 38804585 -138169555 - LTR52-int LTR ERVL -2218 1338 977 204 40 0 0 chrX 38804585 38804610 -138169530 + (TC)n Simple_repeat Simple_repeat 2 26 0 1064 167 25 10 chrX 38804637 38804835 -138169305 - LTR52-int LTR ERVL -2580 976 776 * 2607 181 41 65 chrX 38804832 38805513 -138168627 - LTR52-int LTR ERVL -2889 667 3 1140 177 164 35 chrX 38805514 38805881 -138168259 - LTR52 LTR ERVL -5 416 3 1845 192 10 16 chrX 38805881 38806267 -138167873 + L1MB7 LINE L1 5787 6170 -14 220 255 234 0 chrX 38806345 38806439 -138167701 + L2 LINE L2 3198 3313 0 265 254 92 49 chrX 38806569 38806711 -138167429 - L1ME4a LINE L1 -28 6093 5946 676 281 18 9 chrX 38806841 38807062 -138167078 - L1ME3A LINE L1 -5 6165 5943 185 0 0 39 chrX 38807216 38807242 -138166898 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 9403 30 0 200 chrX 38807248 38808989 -138165151 + SVA Other Other 1 1400 0 922 254 40 12 chrX 38809037 38809364 -138164776 + L1MDa LINE L1 75 410 -6130 270 288 38 0 chrX 38809708 38809788 -138164352 + L1MDa LINE L1 785 867 -5673 3003 222 76 46 chrX 38810169 38811225 -138162915 + L1MDa LINE L1 847 1870 -4670 801 113 8 0 chrX 38811225 38811358 -138162782 + L1MA4 LINE L1 6156 6289 -11 3003 222 76 46 chrX 38811358 38811756 -138162384 + L1MDa LINE L1 1870 2322 -4218 2220 113 0 0 chrX 38811756 38812047 -138162093 - AluSx SINE Alu -21 291 1 3003 222 76 46 chrX 38812047 38812246 -138161894 + L1MDa LINE L1 2322 2514 -4026 869 257 50 29 chrX 38812280 38812736 -138161404 - L1M4 LINE L1 -2739 3407 2942 10195 179 53 22 chrX 38812736 38815082 -138159058 - L1MC3 LINE L1 -13 7772 5355 32 43 0 0 chrX 38816111 38816157 -138157983 + AT_rich Low_complexity Low_complexity 1 46 0 189 74 0 0 chrX 38816314 38816341 -138157799 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 216 260 27 0 chrX 38816447 38816520 -138157620 + MIR SINE MIR 188 262 0 341 283 191 7 chrX 38816833 38816985 -138157155 + L2 LINE L2 3130 3309 -4 604 36 12 0 chrX 38817190 38817274 -138156866 - L1PA3 LINE L1 0 6155 6071 * 7409 28 0 0 chrX 38817261 38818906 -138155234 + L1PA6 LINE L1 4511 6154 0 453 267 67 33 chrX 38819856 38820036 -138154104 + MIR SINE MIR 45 230 -32 365 303 55 30 chrX 38821043 38821208 -138152932 + MIR SINE MIR 46 214 -48 222 351 69 23 chrX 38821623 38821754 -138152386 - L2 LINE L2 0 3272 3136 933 235 41 99 chrX 38821756 38822373 -138151767 - L2 LINE L2 0 3313 2737 335 281 100 12 chrX 38823207 38823361 -138150779 - MIR SINE MIR -61 147 2 214 235 204 20 chrX 38823910 38824008 -138150132 + MIR SINE MIR 32 147 -115 6181 40 1 7 chrX 38824413 38825166 -138148974 + L1PA5 LINE L1 5401 6149 -5 3347 84 76 2 chrX 38825166 38825677 -138148463 + L1MA2 LINE L1 5754 6304 0 24 32 0 0 chrX 38825677 38825708 -138148432 + AT_rich Low_complexity Low_complexity 1 31 0 243 269 71 28 chrX 38825772 38825913 -138148227 + MIR SINE MIR 108 254 -8 17865 147 37 31 chrX 38826152 38828606 -138145534 + L1MA3 LINE L1 10 2448 -5117 2123 119 0 0 chrX 38828606 38828909 -138145231 + AluSc SINE Alu 1 303 0 17865 147 37 31 chrX 38828909 38830799 -138143341 + L1MA3 LINE L1 2448 4354 -3211 1964 145 3 10 chrX 38830799 38831095 -138143045 + AluSq SINE Alu 1 294 -19 17865 147 37 31 chrX 38831095 38831511 -138142629 + L1MA3 LINE L1 4354 4766 -2799 1935 195 15 0 chrX 38831507 38831913 -138142227 + L1MA3 LINE L1 6306 6717 -848 * 4776 123 44 5 chrX 38831913 38832645 -138141495 + L1MA3 LINE L1 6942 7708 -16 2054 120 6 32 chrX 38832645 38832961 -138141179 - AluSx SINE Alu -4 308 1 4776 123 44 5 chrX 38832961 38832979 -138141161 + L1MA3 LINE L1 7708 7724 0 294 302 71 16 chrX 38832987 38833113 -138141027 - MLT1H LTR MaLR -96 453 321 1692 173 126 24 chrX 38833174 38833722 -138140418 + L1ME1 LINE L1 5090 5672 -494 848 138 6 3 chrX 38833724 38833866 -138140274 + MSTB2 LTR MaLR 1 135 -229 18495 195 74 13 chrX 38833866 38837570 -138136570 - L1PA13 LINE L1 -858 5939 1701 1867 138 44 10 chrX 38837570 38837866 -138136274 - AluSx SINE Alu -6 306 1 18495 195 74 13 chrX 38837866 38839677 -138134463 - L1PA13 LINE L1 -5096 1701 1 473 119 0 0 chrX 38839686 38839753 -138134387 + MSTB2 LTR MaLR 391 457 0 1390 259 41 37 chrX 38839753 38840244 -138133896 + L1ME1 LINE L1 5670 6162 -4 239 314 0 0 chrX 38840248 38840334 -138133806 + L1ME1 LINE L1 6007 6092 -74 279 232 0 0 chrX 38840661 38840717 -138133423 - L2 LINE L2 -2 3311 3256 8128 24 2 0 chrX 38840855 38842507 -138131633 + L1PA4 LINE L1 4494 6147 -8 405 282 61 8 chrX 38843204 38843335 -138130805 + L2 LINE L2 3172 3309 -4 325 274 10 39 chrX 38843479 38843581 -138130559 + MIR SINE MIR 37 135 -73 410 291 112 15 chrX 38843626 38843760 -138130380 - L2 LINE L2 -1 3271 3125 261 0 0 0 chrX 38844128 38844157 -138129983 + (TTA)n Simple_repeat Simple_repeat 1 29 0 208 342 71 13 chrX 38844199 38844354 -138129786 - MIR SINE MIR -32 230 67 1181 241 26 3 chrX 38844367 38844674 -138129466 + L1MC4 LINE L1 6774 7087 -955 2198 157 28 41 chrX 38844696 38845268 -138128872 + MLT2A2 LTR ERVL 1 554 0 260 143 0 20 chrX 38845270 38845319 -138128821 + L1MC4 LINE L1 7099 7146 -896 2738 155 43 26 chrX 38845327 38845467 -138128673 + L1MA8 LINE L1 5688 5824 -467 1727 189 3 0 chrX 38845467 38845764 -138128376 + AluJo SINE Alu 3 300 -12 2738 155 43 26 chrX 38845764 38846158 -138127982 + L1MA8 LINE L1 5824 6231 -60 345 285 39 31 chrX 38846167 38846297 -138127843 + MIR SINE MIR 122 252 -10 287 351 18 0 chrX 38846721 38846832 -138127308 - MIR SINE MIR -83 179 67 200 289 99 66 chrX 38846918 38847039 -138127101 + L2 LINE L2 3178 3302 -11 315 0 0 0 chrX 38847826 38847861 -138126279 + (CA)n Simple_repeat Simple_repeat 2 36 0 370 343 106 26 chrX 38847939 38848280 -138125860 + MLT1L LTR MaLR 149 516 -99 3070 286 80 45 chrX 38848306 38849577 -138124563 - L2 LINE L2 -14 3299 1974 2065 116 4 0 chrX 38849577 38849854 -138124286 - AluSq SINE Alu -27 286 9 3070 286 80 45 chrX 38849854 38850222 -138123918 - L2 LINE L2 -1339 1974 1620 204 67 0 0 chrX 38850301 38850331 -138123809 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 232 178 206 0 chrX 38850375 38850448 -138123692 - MER94 DNA DNA -42 92 5 398 327 131 19 chrX 38850454 38850668 -138123472 + MIR SINE MIR 15 252 -10 514 165 11 0 chrX 38850904 38850995 -138123145 + MLT2B2 LTR ERVL 1 92 -423 * 706 228 54 0 chrX 38850994 38851143 -138122997 + MLT1E1 LTR MaLR 498 654 0 246 136 0 0 chrX 38851676 38851720 -138122420 + (TG)n Simple_repeat Simple_repeat 2 45 0 474 272 136 0 chrX 38852964 38853155 -138120985 + MIR SINE MIR 45 261 -1 272 309 55 36 chrX 38854185 38854350 -138119790 + MIR SINE MIR 46 213 -49 209 344 69 23 chrX 38854816 38854947 -138119193 - L2 LINE L2 0 3272 3136 745 255 62 94 chrX 38854949 38855634 -138118506 - L2 LINE L2 0 3313 2635 291 221 168 11 chrX 38856395 38856490 -138117650 - MIR SINE MIR -100 162 53 182 250 0 19 chrX 38857087 38857139 -138117001 + MIR SINE MIR 32 82 -180 539 221 55 180 chrX 38857926 38858432 -138115708 - MLT1H LTR MaLR -5 544 102 2461 164 73 0 chrX 38858639 38859036 -138115104 - MSTA LTR MaLR -2 426 1 1833 86 4 31 chrX 38859526 38859801 -138114339 + AluSg SINE Alu 35 302 0 209 186 0 0 chrX 38861731 38861774 -138112366 + G-rich Low_complexity Low_complexity 1 43 0 2328 65 41 0 chrX 38863023 38863313 -138110827 + AluSg SINE Alu 1 302 -8 263 367 33 8 chrX 38863837 38863957 -138110183 + L2 LINE L2 3107 3229 -43 227 150 0 0 chrX 38864140 38864180 -138109960 + L2 LINE L2 3274 3313 0 202 418 25 0 chrX 38864463 38864585 -138109555 + L2 LINE L2 3136 3260 -12 1881 201 99 48 chrX 38864755 38864804 -138109336 + L1MC5 LINE L1 7249 7294 -667 596 218 100 0 chrX 38864804 38864914 -138109226 + FLAM_A SINE Alu 1 121 -12 1881 201 99 48 chrX 38864914 38865511 -138108629 + L1MC5 LINE L1 7294 7928 -33 2597 48 0 0 chrX 38866499 38866794 -138107346 - AluY SINE Alu -16 295 1 305 282 0 0 chrX 38866920 38867005 -138107135 + MIR SINE MIR 80 164 -98 1709 182 4 0 chrX 38867068 38867348 -138106792 - AluJo SINE Alu -31 281 1 2811 208 37 0 chrX 38867982 38868496 -138105644 - REP3 LTR ERV -29 533 1 1943 204 41 24 chrX 38868553 38868964 -138105176 - LTR52 LTR ERVL -3 418 1 5908 239 42 9 chrX 38868964 38870226 -138103914 - LTR52-int LTR ERVL 0 3556 2253 3736 202 19 47 chrX 38870245 38871165 -138102975 - LTR52-int LTR ERVL -1417 2139 1318 1349 217 30 30 chrX 38871173 38871505 -138102635 - MLT2D LTR ERVL 0 414 83 677 200 97 6 chrX 38871505 38871527 -138102613 - Ricksha DNA DNA -2871 375 338 17059 162 101 75 chrX 38871527 38872877 -138101263 - ERVL-D LTR ERVL 0 5764 4449 2391 109 78 62 chrX 38872877 38873298 -138100842 + MSTC LTR MaLR 1 428 0 17059 162 101 75 chrX 38873298 38874051 -138100089 - ERVL-D LTR ERVL -1315 4449 3716 231 61 0 0 chrX 38874051 38874084 -138100056 + (CA)n Simple_repeat Simple_repeat 2 34 0 17059 162 101 75 chrX 38874084 38874351 -138099789 - ERVL-D LTR ERVL -2048 3716 3457 2238 139 73 14 chrX 38874351 38874695 -138099445 - THE1B LTR MaLR 0 364 1 17059 162 101 75 chrX 38874695 38874801 -138099339 - ERVL-D LTR ERVL -2307 3457 3355 802 206 67 31 chrX 38874801 38875024 -138099116 - L1MA9 LINE L1 -87 6225 5995 17059 162 101 75 chrX 38875024 38875723 -138098417 - ERVL-D LTR ERVL -2409 3355 2675 2487 104 44 14 chrX 38875723 38876087 -138098053 - THE1C LTR MaLR 0 375 1 17059 162 101 75 chrX 38876087 38876674 -138097466 - ERVL-D LTR ERVL -3089 2675 1676 508 186 0 0 chrX 38876674 38876760 -138097380 - MLT1A2 LTR MaLR 0 374 289 297 350 55 21 chrX 38877845 38878136 -138096004 - HERVL40 LTR ERVL -1596 3934 3634 1354 183 60 65 chrX 38878941 38879308 -138094832 + MLT1A1 LTR MaLR 1 365 0 2211 106 66 23 chrX 38879519 38879868 -138094272 - THE1B LTR MaLR 0 364 1 2070 169 119 28 chrX 38880329 38880792 -138093348 - MLT1D LTR MaLR 0 505 1 387 213 62 0 chrX 38882521 38882601 -138091539 - HERVL40 LTR ERVL -3337 2193 2109 2787 213 43 0 chrX 38883348 38883884 -138090256 - REP3 LTR ERV 0 562 4 24 0 0 0 chrX 38884523 38884547 -138089593 + AT_rich Low_complexity Low_complexity 1 24 0 32 26 0 0 chrX 38884577 38884616 -138089524 + AT_rich Low_complexity Low_complexity 1 39 0 7254 45 5 0 chrX 38885196 38886230 -138087910 + L1PA6 LINE L1 5106 6143 -11 2812 150 26 19 chrX 38886374 38886915 -138087225 - LTR24B LTR ERV1 -9 567 23 311 279 0 19 chrX 38887027 38887131 -138087009 - LTR24B-int LTR ERV1 -15 5108 5007 970 326 37 31 chrX 38887513 38888181 -138085959 - HERVR LTR ERV1 -437 6685 6014 282 368 7 0 chrX 38888421 38888557 -138085583 - HERVR LTR ERV1 -1353 5769 5633 24321 132 8 28 chrX 38888951 38890554 -138083586 + L1PA8A LINE L1 2 1636 -4810 2211 76 7 30 chrX 38890554 38890855 -138083285 + AluY SINE Alu 1 294 -17 24321 132 8 28 chrX 38890855 38895766 -138078374 + L1PA8A LINE L1 1636 6443 -3 17752 155 45 19 chrX 38895775 38903274 -138070866 + L1MA1 LINE L1 16 7714 -7 535 334 24 29 chrX 38903465 38903878 -138070262 - HERVR LTR ERV1 -2090 2557 2147 292 267 67 47 chrX 38904519 38904669 -138069471 - HERVR LTR ERV1 -3175 4217 4065 4653 209 38 28 chrX 38906420 38907808 -138066332 + L1MB2 LINE L1 2985 4386 -1760 21 57 0 0 chrX 38907813 38907848 -138066292 + AT_rich Low_complexity Low_complexity 1 35 0 1664 175 49 80 chrX 38907867 38908106 -138066034 + L1MB2 LINE L1 4899 5144 -1027 1809 61 0 0 chrX 38908106 38908319 -138065821 + AluY SINE Alu 1 213 -98 1664 175 49 80 chrX 38908319 38908879 -138065261 + L1MB2 LINE L1 5144 5668 -503 1385 158 36 39 chrX 38908926 38909256 -138064884 + L1MA9 LINE L1 5950 6278 -34 2752 145 32 4 chrX 38909260 38909764 -138064376 + L1MB2 LINE L1 5652 6169 -2 7009 201 9 14 chrX 38909867 38911572 -138062568 + L1 LINE L1 3620 5316 -830 4518 108 46 8 chrX 38911571 38912309 -138061831 + L1PA16 LINE L1 5392 6157 -9 * 4132 174 12 27 chrX 38912363 38913123 -138061017 - L1MA4 LINE L1 -11 6289 5519 1913 157 21 26 chrX 38913123 38913500 -138060640 - THE1C LTR MaLR 0 375 1 9947 118 40 9 chrX 38913508 38915038 -138059102 - THE1C-int LTR MaLR -2 1578 1 1955 119 32 37 chrX 38915038 38915415 -138058725 - THE1C LTR MaLR 0 375 1 4132 174 12 27 chrX 38915415 38915487 -138058653 - L1MA4 LINE L1 -786 5514 5460 5597 119 20 1 chrX 38915487 38917079 -138057061 + L1PA13 LINE L1 4554 6162 -1 261 105 0 0 chrX 38917079 38917117 -138057023 - L1MA4 LINE L1 -825 5475 5438 * 10204 153 47 10 chrX 38917115 38920340 -138053800 + L1MA3 LINE L1 2957 6305 0 226 315 96 0 chrX 38921357 38921430 -138052710 + L2 LINE L2 3107 3186 -86 190 264 42 28 chrX 38921564 38921636 -138052504 + MIR SINE MIR 32 104 -158 550 311 33 16 chrX 38921683 38921931 -138052209 + MIR SINE MIR 8 262 0 180 254 30 30 chrX 38921937 38922004 -138052136 + MIR SINE MIR 136 202 -60 2025 119 10 14 chrX 38922148 38922443 -138051697 + AluSq SINE Alu 1 294 -19 184 304 0 114 chrX 38922517 38922596 -138051544 + MIR SINE MIR 7 76 -186 536 253 7 14 chrX 38922783 38922929 -138051211 + MIR SINE MIR 24 168 -94 214 290 110 30 chrX 38923291 38923391 -138050749 + L2 LINE L2 3122 3229 -43 197 65 32 0 chrX 38923462 38923493 -138050647 + (TA)n Simple_repeat Simple_repeat 2 33 0 195 266 55 73 chrX 38923555 38923664 -138050476 - MIR SINE MIR -111 151 45 281 200 0 0 chrX 38924696 38924756 -138049384 - L1MCb LINE L1 -5768 277 218 434 229 72 54 chrX 38924761 38924927 -138049213 - L1MCb LINE L1 -6239 325 157 277 278 15 78 chrX 38924959 38925164 -138048976 + HAL1 LINE L1 2315 2506 -1 345 268 62 0 chrX 38925442 38925539 -138048601 - MIR SINE MIR -99 163 61 30 27 0 0 chrX 38925865 38925902 -138048238 + AT_rich Low_complexity Low_complexity 1 37 0 327 266 114 6 chrX 38926002 38926160 -138047980 + L1M4 LINE L1 3762 3936 -2210 631 273 214 0 chrX 38926224 38926499 -138047641 - MER46C DNA MER2_type -4 334 1 1677 243 35 23 chrX 38926551 38927073 -138047067 - L1ME3A LINE L1 -3 6167 5640 1486 222 127 23 chrX 38927074 38927666 -138046474 + MLT1E3 LTR MaLR 1 615 -9 658 201 20 20 chrX 38927674 38927823 -138046317 + MLT1E3-int LTR MaLR 1 149 -1222 787 231 33 96 chrX 38927828 38928191 -138045949 + MLT1E3-int LTR MaLR 1032 1371 0 795 229 171 24 chrX 38928191 38928738 -138045402 + MLT1E3 LTR MaLR 1 654 0 759 262 95 5 chrX 38928740 38929053 -138045087 - L1ME3A LINE L1 -536 5634 5296 1069 247 84 58 chrX 38929114 38929992 -138044148 - L1ME3A LINE L1 -1011 5135 4235 305 303 55 12 chrX 38929999 38930164 -138043976 - MLT1L LTR MaLR -302 313 142 1868 140 20 17 chrX 38930356 38930648 -138043492 + AluSx SINE Alu 1 293 -19 1933 119 32 0 chrX 38930648 38930926 -138043214 + AluSx SINE Alu 17 303 -9 856 240 53 0 chrX 38931168 38931376 -138042764 - MER20 DNA MER1_type 0 219 1 395 299 78 30 chrX 38931564 38931795 -138042345 - L1ME LINE L1 -367 5754 5513 239 268 116 51 chrX 38932329 38932467 -138041673 + L2 LINE L2 2338 2484 -830 608 234 14 7 chrX 38932471 38932616 -138041524 + MLT1G LTR MaLR 410 555 -35 273 216 10 98 chrX 38932797 38932991 -138041149 + (CATTT)n Simple_repeat Simple_repeat 4 180 0 * 345 172 15 121 chrX 38932973 38933171 -138040969 + (CATTC)n Simple_repeat Simple_repeat 3 179 0 2231 93 0 7 chrX 38933302 38933603 -138040537 + AluSx SINE Alu 1 299 -13 453 304 78 23 chrX 38933614 38933871 -138040269 + L1ME4a LINE L1 5589 5859 -262 22 0 0 0 chrX 38933927 38933949 -138040191 + AT_rich Low_complexity Low_complexity 1 22 0 246 62 0 0 chrX 38934645 38934677 -138039463 + (CA)n Simple_repeat Simple_repeat 2 33 0 378 265 60 150 chrX 38935353 38936058 -138038082 + L1M2 LINE L1 770 1410 -5439 233 304 147 45 chrX 38937779 38938003 -138036137 + MER115 DNA AcHobo 13 259 -434 382 264 16 47 chrX 38938114 38938243 -138035897 - MIR SINE MIR -82 180 56 * 721 300 30 8 chrX 38938217 38938454 -138035686 + MIR SINE MIR 21 262 0 550 277 25 6 chrX 38938894 38939053 -138035087 - MIR SINE MIR -1 261 100 675 204 127 0 chrX 38939673 38939830 -138034310 + MER45A DNA AcHobo 1 177 -1 497 273 28 14 chrX 38939953 38940096 -138034044 + MIR SINE MIR 24 168 -94 213 259 0 35 chrX 38940648 38940706 -138033434 + L2 LINE L2 3255 3310 -3 403 302 29 7 chrX 38941018 38941157 -138032983 + L2 LINE L2 3172 3313 0 242 197 26 0 chrX 38941448 38941571 -138032569 + CT-rich Low_complexity Low_complexity 1 126 0 2158 200 84 48 chrX 38941598 38941931 -138032209 - L1ME LINE L1 -370 5796 5477 3305 37 2 7 chrX 38941931 38942334 -138031806 + L1PA6 LINE L1 5749 6149 -5 2158 200 84 48 chrX 38942334 38942397 -138031743 - L1ME LINE L1 -689 5477 5418 309 26 0 0 chrX 38942397 38942435 -138031705 + (TG)n Simple_repeat Simple_repeat 2 39 0 1992 111 21 4 chrX 38942435 38942714 -138031426 - AluSx SINE Alu -28 284 1 2158 200 84 48 chrX 38942714 38943465 -138030675 - L1ME LINE L1 -747 5419 4601 * 2358 239 31 38 chrX 38943462 38944288 -138029852 - L1ME1 LINE L1 -5 6161 5341 2938 122 39 4 chrX 38944288 38944746 -138029394 + MER101 LTR ERV1 1 474 0 640 237 14 28 chrX 38945178 38945393 -138028747 - LTR4 LTR ERV1 0 596 385 1802 208 44 40 chrX 38946451 38947155 -138026985 + LTR43-int LTR ERV1 1199 3120 -3211 1021 187 37 79 chrX 38947369 38947957 -138026183 + LTR43-int LTR ERV1 1563 3646 -2685 822 150 20 45 chrX 38948092 38948292 -138025848 + LTR43-int LTR ERV1 3536 3730 -2868 506 155 0 21 chrX 38948424 38948521 -138025619 - LTR1 LTR ERV1 -690 95 1 1334 245 66 12 chrX 38948834 38949286 -138024854 + LTR43-int LTR ERV1 346 862 -3936 3612 190 23 26 chrX 38949287 38950025 -138024115 + LTR43-int LTR ERV1 4063 4798 0 4442 88 3 5 chrX 38950025 38950628 -138023512 + LTR43 LTR ERV1 1 602 0 857 163 163 51 chrX 38951370 38951566 -138022574 + MER20 DNA MER1_type 2 219 0 2725 213 81 23 chrX 38951807 38952599 -138021541 + L1ME1 LINE L1 5325 6162 -4 5672 141 14 2 chrX 38952679 38953670 -138020470 - L1MA4 LINE L1 -1 6299 5297 985 201 5 0 chrX 38953667 38953871 -138020269 - L1MA4 LINE L1 -2475 3671 3467 * 506 253 124 11 chrX 38955066 38955229 -138018911 + MER5A DNA MER1_type 4 187 -2 42476 35 2 1 chrX 38955433 38961584 -138012556 - L1PA3 LINE L1 0 6155 2 296 332 181 19 chrX 38961808 38962013 -138012127 - MIR SINE MIR -17 245 8 1366 172 95 37 chrX 38962199 38962390 -138011750 - L1MD2 LINE L1 -10 6349 6170 225 0 0 0 chrX 38962390 38962415 -138011725 + (TG)n Simple_repeat Simple_repeat 2 26 0 1366 172 95 37 chrX 38962415 38962511 -138011629 - L1MD2 LINE L1 -189 6170 6081 2167 66 0 76 chrX 38962511 38962842 -138011298 - AluSc SINE Alu 0 308 1 1366 172 95 37 chrX 38962842 38962900 -138011240 - L1MD2 LINE L1 -278 6081 5982 781 152 0 7 chrX 38962928 38963066 -138011074 - L1MD2 LINE L1 -652 5707 5571 554 276 52 17 chrX 38963753 38963927 -138010213 - MIR SINE MIR -14 248 69 433 322 101 5 chrX 38963917 38964125 -138010015 + MIR SINE MIR 23 250 -12 * 1322 155 54 0 chrX 38964862 38965120 -138009020 - Charlie1 DNA MER1_type -401 2360 2089 216 211 123 0 chrX 38965122 38965179 -138008961 + MIR SINE MIR 90 153 -109 387 0 0 0 chrX 38965685 38965728 -138008412 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 229 326 23 12 chrX 38965914 38966000 -138008140 - MIR SINE MIR -4 258 172 324 322 60 38 chrX 38966258 38966441 -138007699 + MIR SINE MIR 25 211 -51 315 71 0 0 chrX 38966468 38966510 -138007630 + (TA)n Simple_repeat Simple_repeat 1 42 0 362 308 137 24 chrX 38966639 38966850 -138007290 + L1M4 LINE L1 14 248 -6294 567 193 86 0 chrX 38967008 38967148 -138006992 + L1 LINE L1 3568 3719 -2427 2723 133 5 0 chrX 38967149 38967569 -138006571 - MSTB1 LTR MaLR 0 432 11 2289 221 33 46 chrX 38967570 38968294 -138005846 + L1 LINE L1 3731 4445 -1701 2517 150 9 30 chrX 38968302 38968763 -138005377 + L1M1 LINE L1 22 472 -7093 1478 170 0 15 chrX 38968763 38969028 -138005112 + MLT1A1 LTR MaLR 105 365 0 2534 184 4 2 chrX 38969029 38969507 -138004633 + MLT1A1-int LTR MaLR 2 480 -1255 3611 217 62 72 chrX 38969516 38970655 -138003485 + MLT1A1-int LTR MaLR 609 1735 0 1565 177 116 3 chrX 38970655 38970983 -138003157 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 38971452 38971474 -138002666 + AT_rich Low_complexity Low_complexity 1 22 0 2015 243 31 9 chrX 38972252 38972918 -138001222 + L1M4 LINE L1 3481 4161 -1985 202 224 0 0 chrX 38972919 38972968 -138001172 + A-rich Low_complexity Low_complexity 1 49 0 288 167 0 0 chrX 38973031 38973085 -138001055 - L1PB4 LINE L1 -3 6153 6100 2483 132 41 19 chrX 38973086 38973503 -138000637 - MSTB LTR MaLR 0 426 1 2576 151 46 0 chrX 38973503 38973940 -138000200 - L1PB4 LINE L1 -104 6052 5596 10217 167 15 12 chrX 38973989 38975711 -137998429 - L1M1 LINE L1 -5837 1728 1 3665 233 58 13 chrX 38975698 38976566 -137997574 - L1M1 LINE L1 -6640 925 19 * 11462 157 29 6 chrX 38976608 38978420 -137995720 + ERVL LTR ERVL 717 2569 -3195 754 221 25 12 chrX 38978420 38978583 -137995557 + MLT2B3 LTR ERVL 390 554 0 470 179 11 11 chrX 38978586 38978681 -137995459 - L1M4 LINE L1 -1194 5021 4927 * 4065 263 58 24 chrX 38978673 38980570 -137993570 - L1MEc LINE L1 -2517 3698 1772 319 317 39 39 chrX 38980604 38980721 -137993419 - L1M4c LINE L1 -4415 2723 2607 2391 88 7 0 chrX 38980721 38981017 -137993123 - AluSc SINE Alu -11 298 1 319 317 39 39 chrX 38981017 38981180 -137992960 - L1M4c LINE L1 -4530 2608 2293 1358 201 49 4 chrX 38981213 38981476 -137992664 - MLT1D LTR MaLR 0 505 231 399 143 16 0 chrX 38981476 38981539 -137992601 - MLT1D LTR MaLR -441 64 1 754 217 52 48 chrX 38981541 38981790 -137992350 - L1M4c LINE L1 -4681 2278 2029 653 158 73 12 chrX 38981785 38981949 -137992191 - L1M4c LINE L1 -5040 1815 1642 * 5255 71 18 10 chrX 38981959 38982631 -137991509 + L1PA13 LINE L1 5484 6160 -3 4854 131 44 40 chrX 38982871 38983718 -137990422 - MER4D LTR ERV1 -2 901 52 267 154 125 67 chrX 38983735 38983839 -137990301 - L1M4c LINE L1 -5096 1759 1650 2341 104 0 0 chrX 38983839 38984136 -137990004 + AluSx SINE Alu 1 297 -15 3257 181 52 11 chrX 38984140 38984752 -137989388 + LTR9B LTR ERV1 8 644 0 412 122 122 67 chrX 38984752 38984842 -137989298 + HUERS-P3 LTR ERV1 1 95 -7323 * 799 127 23 11 chrX 38984829 38984965 -137989175 + HUERS-P3 LTR ERV1 411 529 -6889 8402 153 16 17 chrX 38984969 38987188 -137986952 + HUERS-P3 LTR ERV1 764 3284 -5314 599 232 152 0 chrX 38987181 38987306 -137986834 + HUERS-P3 LTR ERV1 4539 4682 -4237 * 4514 121 30 8 chrX 38987307 38987969 -137986171 + HUERS-P3 LTR ERV1 4901 5577 -3342 * 4778 169 6 11 chrX 38987936 38988719 -137985421 + HUERS-P3 LTR ERV1 6143 6921 -1998 476 204 0 11 chrX 38988726 38988819 -137985321 + HUERS-P3 LTR ERV1 6854 6945 -473 835 165 16 36 chrX 38988822 38989016 -137985124 + HUERS-P3 LTR ERV1 2383 2572 -2443 1312 179 19 17 chrX 38989294 38989556 -137984584 + HUERS-P3 LTR ERV1 7163 8918 -1 3340 152 68 20 chrX 38989558 38990164 -137983976 + LTR9B LTR ERV1 10 644 0 1497 220 70 34 chrX 38990164 38990463 -137983677 - L1M4c LINE L1 -5194 1665 1343 6048 24 9 1 chrX 38990463 38991126 -137983014 + L1PA4 LINE L1 5483 6150 -5 1497 220 70 34 chrX 38991126 38991271 -137982869 - L1M4c LINE L1 -5516 1343 1205 476 262 136 52 chrX 38991483 38991645 -137982495 - L1M4c LINE L1 -5642 1217 1070 2486 168 54 2 chrX 38991645 38992050 -137982090 - MSTB LTR MaLR 0 426 1 476 262 136 52 chrX 38992050 38992191 -137981949 - L1M4c LINE L1 -5789 1070 649 634 242 6 30 chrX 38992256 38992421 -137981719 + MER67C LTR ERV1 1 161 -549 1484 172 151 32 chrX 38992426 38992863 -137981277 + LTR54B LTR ERV1 8 496 -2 * 3005 152 60 11 chrX 38992863 38993386 -137980754 + MER67C LTR ERV1 162 710 0 620 236 146 6 chrX 38993569 38993747 -137980393 - L1M4c LINE L1 -6646 213 11 291 169 17 0 chrX 38993752 38993811 -137980329 + L1MD3 LINE L1 7928 7987 -8 333 333 41 0 chrX 38993814 38993937 -137980203 - L2 LINE L2 -12 3260 3133 2328 48 0 0 chrX 38994317 38994586 -137979554 - AluSc SINE Alu -8 301 33 284 308 47 37 chrX 38994858 38994965 -137979175 - L2 LINE L2 -40 3232 3125 471 258 19 45 chrX 38995086 38995241 -137978899 - MIR SINE MIR -77 185 35 1819 160 7 3 chrX 38995747 38996035 -137978105 - AluJo SINE Alu -23 289 1 5283 36 3 0 chrX 38996042 38996626 -137977514 + L1PA5 LINE L1 5566 6151 -3 255 61 0 0 chrX 38996826 38996859 -137977281 + (TG)n Simple_repeat Simple_repeat 2 34 0 341 274 94 9 chrX 38996904 38997010 -137977130 + MIR SINE MIR 92 206 -56 295 333 106 16 chrX 38997227 38997350 -137976790 - L2 LINE L2 -40 3232 3099 217 316 0 0 chrX 38997840 38997897 -137976243 + MIR SINE MIR 48 104 -158 680 300 70 12 chrX 38997959 38998202 -137975938 + MIR SINE MIR 1 257 -5 546 371 51 30 chrX 38998965 38999591 -137974549 + L2 LINE L2 1253 1891 -1423 26 0 0 0 chrX 38999798 38999824 -137974316 + AT_rich Low_complexity Low_complexity 1 26 0 4293 193 23 16 chrX 38999824 39000720 -137973420 - L1MB8 LINE L1 -21 6968 6066 1520 204 90 6 chrX 39000726 39001237 -137972903 - L1MB8 LINE L1 -2922 4035 3424 2016 289 68 58 chrX 39001238 39002065 -137972075 - L1MB8 LINE L1 -5997 862 28 4130 140 22 2 chrX 39002070 39002669 -137971471 - LTR36 LTR ERV1 0 611 1 603 354 32 59 chrX 39002709 39003150 -137970990 - LTR36-int LTR ERV1 -73 7049 6621 368 177 32 0 chrX 39003169 39003241 -137970899 - MER49 LTR ERV1 -165 752 488 991 149 85 64 chrX 39003253 39003488 -137970652 - LTR36-int LTR ERV1 -178 6153 5914 10689 139 28 51 chrX 39003541 39007036 -137967104 - LTR36-int LTR ERV1 -529 5417 1634 478 129 35 65 chrX 39007025 39007180 -137966960 - LTR36-int LTR ERV1 -2530 4068 1731 * 6610 55 6 72 chrX 39007180 39008065 -137966075 + LTR12 LTR ERV1 1 826 0 22988 89 6 13 chrX 39008065 39011317 -137962823 + HERV9 LTR ERV1 40 714 0 2363 142 70 2 chrX 39011338 39011781 -137962359 - LTR36-int LTR ERV1 -6461 1659 1187 917 161 35 43 chrX 39011774 39012088 -137962052 - LTR36-int LTR ERV1 -476 1926 1076 * 521 250 8 31 chrX 39012169 39012297 -137961843 - LTR36-int LTR ERV1 -2738 1547 1423 653 290 29 25 chrX 39012611 39012856 -137961284 - LTR36-int LTR ERV1 -1422 364 119 4200 120 26 25 chrX 39012932 39013542 -137960598 - LTR36 LTR ERV1 0 611 1 413 342 44 0 chrX 39013583 39013811 -137960329 + L2 LINE L2 2146 2383 -931 538 100 0 0 chrX 39013815 39013885 -137960255 - LTR36 LTR ERV1 -103 508 439 239 236 18 45 chrX 39013905 39014015 -137960125 + L2 LINE L2 2401 2507 -807 1018 185 0 0 chrX 39014047 39014204 -137959936 - FRAM SINE Alu -20 156 1 303 312 43 0 chrX 39014207 39014300 -137959840 + L2 LINE L2 2533 2629 -685 485 356 31 62 chrX 39014453 39014841 -137959299 + L2 LINE L2 2856 3231 -41 504 216 43 36 chrX 39015132 39015271 -137958869 - L1MA9 LINE L1 -30 6282 6143 2318 56 38 0 chrX 39015274 39015562 -137958578 - AluY SINE Alu -12 299 1 322 296 43 9 chrX 39015606 39015721 -137958419 + MIR SINE MIR 45 163 -99 227 377 70 0 chrX 39017014 39017128 -137957012 - MER91A DNA MER1_type -74 122 1 304 226 73 79 chrX 39017251 39017360 -137956780 + L1ME4a LINE L1 5944 6053 -68 1560 109 50 0 chrX 39017360 39017598 -137956542 - L1MA3 LINE L1 0 6305 6056 304 226 73 79 chrX 39017598 39017665 -137956475 + L1ME4a LINE L1 6053 6119 -2 1110 174 40 25 chrX 39018005 39018280 -137955860 - L1MC5 LINE L1 -35 7926 7648 21 36 0 0 chrX 39018959 39018987 -137955153 + AT_rich Low_complexity Low_complexity 1 28 0 298 192 110 0 chrX 39018987 39019060 -137955080 - MER113 DNA MER1_type? -274 247 167 243 377 39 8 chrX 39019356 39019486 -137954654 - L2 LINE L2 0 3272 3139 193 300 83 0 chrX 39020128 39020188 -137953952 - L2 LINE L2 -220 3093 3029 1854 118 33 59 chrX 39020353 39020658 -137953482 - AluSx SINE Alu -15 297 1 564 138 53 0 chrX 39022105 39022199 -137951941 + L1PA13 LINE L1 6060 6158 -5 183 80 0 0 chrX 39024481 39024506 -137949634 + (CCG)n Simple_repeat Simple_repeat 1 25 0 215 91 91 0 chrX 39025584 39025628 -137948512 + T-rich Low_complexity Low_complexity 2 49 0 1373 7 0 0 chrX 39025643 39025788 -137948352 - L1PA3 LINE L1 -1 6154 6010 6497 19 0 0 chrX 39025788 39026776 -137947364 + L1PA3 LINE L1 4999 5986 -169 2389 78 3 0 chrX 39027436 39027743 -137946397 + AluSp SINE Alu 1 308 -5 243 287 23 47 chrX 39027804 39027933 -137946207 + L1M4 LINE L1 4038 4163 -1983 28 29 0 0 chrX 39028033 39028068 -137946072 + AT_rich Low_complexity Low_complexity 1 35 0 2595 149 73 0 chrX 39028624 39029021 -137945119 + MSTA LTR MaLR 1 426 -2 562 247 53 149 chrX 39029247 39029717 -137944423 + MLT1H LTR MaLR 118 542 -7 226 261 97 45 chrX 39029862 39029996 -137944144 - MIR SINE MIR -4 258 118 312 250 110 10 chrX 39031163 39031263 -137942877 + MIR SINE MIR 53 162 -100 749 257 57 79 chrX 39032093 39032695 -137941445 + L2 LINE L2 2737 3313 0 195 351 69 23 chrX 39032697 39032828 -137941312 + L2 LINE L2 3136 3272 0 180 358 49 0 chrX 39032947 39033028 -137941112 + L2 LINE L2 3155 3239 -33 346 311 60 27 chrX 39033252 39033435 -137940705 - MIR SINE MIR -28 234 46 476 256 66 29 chrX 39034472 39034684 -137939456 - MIR SINE MIR -32 230 12 2123 97 10 24 chrX 39035222 39035520 -137938620 + AluSq SINE Alu 1 294 -19 260 213 0 0 chrX 39036186 39036247 -137937893 - MER4-int LTR ERV1 -5423 1175 1115 836 180 53 0 chrX 39036780 39036930 -137937210 - MLT1E1 LTR MaLR 0 654 497 472 161 11 0 chrX 39036932 39037019 -137937121 - MLT2B2 LTR ERVL -427 88 1 507 277 98 36 chrX 39037264 39037488 -137936652 - MIR SINE MIR -10 252 15 693 269 32 50 chrX 39037708 39037990 -137936150 + L2 LINE L2 1628 1904 -1410 6706 56 5 1 chrX 39037991 39038832 -137935308 + L1P LINE L1 1938 2781 -3365 2165 296 108 24 chrX 39038835 39038907 -137935233 + L2 LINE L2 1909 1974 -1339 2335 101 0 0 chrX 39038907 39039204 -137934936 + AluSq SINE Alu 1 297 -16 2165 296 108 24 chrX 39039204 39040216 -137933924 + L2 LINE L2 1974 3067 -246 198 128 0 0 chrX 39040235 39040274 -137933866 + (T)n Simple_repeat Simple_repeat 1 39 0 42457 45 22 1 chrX 39040297 39046325 -137927815 - L1PA3 LINE L1 0 6155 1 411 322 10 34 chrX 39046344 39046552 -137927588 + L2 LINE L2 3097 3299 -14 234 214 165 19 chrX 39046805 39046908 -137927232 - MLT1L LTR MaLR -349 266 149 429 54 0 0 chrX 39046986 39047042 -137927098 + (TG)n Simple_repeat Simple_repeat 1 56 0 328 318 23 69 chrX 39047456 39047629 -137926511 - L1ME3A LINE L1 -37 6133 5969 215 383 42 8 chrX 39047857 39047977 -137926163 - L2 LINE L2 -11 3261 3138 269 298 39 29 chrX 39048064 39048168 -137925972 + MIR3 SINE MIR 68 172 -36 300 365 46 30 chrX 39048592 39048789 -137925351 - MIR SINE MIR 0 262 63 2338 190 54 134 chrX 39048845 39049811 -137924329 - L1MC4 LINE L1 -1 8041 7160 3118 163 39 19 chrX 39049811 39050259 -137923881 - L1MA8 LINE L1 -3 6288 5824 1647 205 3 0 chrX 39050259 39050556 -137923584 - AluJb SINE Alu -12 300 3 3118 163 39 19 chrX 39050556 39050695 -137923445 - L1MA8 LINE L1 -467 5824 5689 2338 190 54 134 chrX 39050695 39050753 -137923387 - L1MC4 LINE L1 -882 7160 7099 2015 176 35 29 chrX 39050755 39051306 -137922834 - MLT2A2 LTR ERVL 0 554 1 1185 234 29 3 chrX 39051326 39051634 -137922506 - L1MC4 LINE L1 -953 7089 6774 192 287 35 92 chrX 39051647 39051775 -137922365 + MIR SINE MIR 67 184 -78 2282 102 3 9 chrX 39051775 39052090 -137922050 + AluSq SINE Alu 1 313 0 192 287 35 92 chrX 39052090 39052135 -137922005 + MIR SINE MIR 184 230 -32 304 198 42 62 chrX 39052154 39052250 -137921890 + L1MC4 LINE L1 6984 7077 -965 427 271 123 0 chrX 39052576 39052698 -137921442 + L2 LINE L2 3136 3272 0 245 254 0 0 chrX 39052741 39052796 -137921344 - MIR SINE MIR -73 135 81 2246 102 0 13 chrX 39052796 39053100 -137921040 - AluSq SINE Alu -13 300 1 396 290 61 8 chrX 39053307 39053438 -137920702 - L2 LINE L2 -4 3309 3172 206 274 0 0 chrX 39053657 39053708 -137920432 + MIR SINE MIR 97 147 -115 192 312 91 0 chrX 39053795 39053872 -137920268 - MIR SINE MIR 0 262 179 37 93 0 0 chrX 39054093 39054200 -137919940 + AT_rich Low_complexity Low_complexity 1 107 0 1518 154 4 0 chrX 39054271 39054518 -137919622 - L1MA6 LINE L1 0 6300 6053 5719 230 26 12 chrX 39054520 39056040 -137918100 + L1 LINE L1 2581 4122 -2024 380 219 16 0 chrX 39056040 39056104 -137918036 + MER2 DNA MER2_type 1 65 -280 42619 63 4 2 chrX 39056248 39061993 -137912147 - L1P2 LINE L1 -397 5758 1 888 192 110 63 chrX 39062024 39062279 -137911861 + MER66B LTR ERV1 220 486 0 412 299 66 14 chrX 39062283 39062567 -137911573 + L1MC5 LINE L1 7215 7415 -393 333 284 14 33 chrX 39062601 39062812 -137911328 + L1MC5 LINE L1 7509 7715 -246 * 5414 169 22 14 chrX 39062802 39063136 -137911004 + L1PB4 LINE L1 4220 4550 -1606 2289 108 3 0 chrX 39063136 39063612 -137910528 + AluSp SINE Alu 6 482 0 5414 169 22 14 chrX 39063612 39065200 -137908940 + L1PB4 LINE L1 4550 6156 0 212 256 0 0 chrX 39066461 39066504 -137907636 + polypurine Low_complexity Low_complexity 5 47 0 334 357 32 36 chrX 39066588 39066868 -137907272 - L2 LINE L2 -470 2844 2566 2255 78 7 3 chrX 39066889 39067203 -137906937 + AluSp SINE Alu 1 315 0 2010 175 116 16 chrX 39067210 39067695 -137906445 + L1MA9 LINE L1 4432 4964 -1182 * 2185 172 103 74 chrX 39067669 39068279 -137905861 + L1MA9 LINE L1 5651 6278 -34 23 0 0 0 chrX 39068348 39068371 -137905769 + AT_rich Low_complexity Low_complexity 1 23 0 2330 78 3 3 chrX 39068529 39068825 -137905315 + AluSp SINE Alu 1 296 -17 266 192 96 0 chrX 39069028 39069080 -137905060 - L2 LINE L2 -3 3310 3254 317 226 0 0 chrX 39069274 39069336 -137904804 - MIR SINE MIR -92 170 109 2157 166 78 14 chrX 39069442 39069875 -137904265 - L1MC2 LINE L1 0 6344 5884 2172 120 0 7 chrX 39069877 39070186 -137903954 - AluSc SINE Alu -2 307 1 344 22 22 0 chrX 39070199 39070244 -137903896 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 39798 42 23 2 chrX 39070244 39076253 -137897887 - L1PA3 LINE L1 -13 6142 2 7486 249 70 34 chrX 39076246 39076404 -137897736 - L1MC2 LINE L1 -445 5899 5748 * 2318 151 28 35 chrX 39076404 39076507 -137897633 + MSTC LTR MaLR 1 103 -325 1945 173 0 3 chrX 39076507 39076808 -137897332 + AluSg SINE Alu 1 300 -10 2318 151 28 35 chrX 39076808 39077135 -137897005 + MSTC LTR MaLR 103 428 0 7486 249 70 34 chrX 39077135 39079354 -137894786 - L1MC2 LINE L1 -596 5748 3610 7330 35 6 0 chrX 39079354 39081029 -137893111 + L1PA5 LINE L1 4447 6141 -13 7486 249 70 34 chrX 39081029 39082223 -137891917 - L1MC2 LINE L1 -2734 3610 2220 2264 119 0 0 chrX 39082223 39082517 -137891623 - AluSx SINE Alu -18 294 1 7486 249 70 34 chrX 39082517 39082627 -137891513 - L1MC2 LINE L1 -4124 2220 2115 874 153 0 8 chrX 39082638 39082769 -137891371 - AluSq/x SINE Alu -182 130 1 337 274 21 120 chrX 39083010 39083219 -137890921 - MIR SINE MIR -70 192 6 211 229 13 47 chrX 39083308 39083407 -137890733 + L2 LINE L2 2896 2992 -321 2642 121 0 0 chrX 39084065 39084429 -137889711 - THE1B LTR MaLR 0 364 1 233 298 0 0 chrX 39084477 39084534 -137889606 + L2 LINE L2 3257 3313 0 218 378 5 41 chrX 39084577 39084773 -137889367 + L2 LINE L2 1227 1415 -1899 3310 222 64 28 chrX 39084959 39085452 -137888688 - L1ME1 LINE L1 -5 6972 6498 2501 142 42 31 chrX 39085452 39085904 -137888236 - MSTB2 LTR MaLR 0 457 1 3310 222 64 28 chrX 39085904 39087092 -137887048 - L1ME1 LINE L1 -479 6498 5227 2039 141 131 13 chrX 39087092 39087475 -137886665 + MSTA LTR MaLR 1 428 0 3310 222 64 28 chrX 39087475 39087829 -137886311 - L1ME1 LINE L1 -1750 5227 4887 252 0 0 0 chrX 39087832 39087860 -137886280 + (TG)n Simple_repeat Simple_repeat 2 29 0 643 148 31 10 chrX 39087871 39088067 -137886073 + CT-rich Low_complexity Low_complexity 1 200 0 1407 166 102 4 chrX 39088067 39088332 -137885808 - AluJo SINE Alu -13 299 9 572 261 22 14 chrX 39088340 39088562 -137885578 - L1ME1 LINE L1 -2094 4863 4640 807 168 0 29 chrX 39088563 39088700 -137885440 + FLAM_C SINE Alu 1 133 -10 548 262 112 0 chrX 39088758 39088972 -137885168 - L1ME1 LINE L1 -5291 1568 1331 185 62 0 31 chrX 39089013 39089045 -137885095 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 41012 47 6 0 chrX 39089045 39095138 -137879002 - L1PA4 LINE L1 -24 6131 1 320 301 23 102 chrX 39095253 39095469 -137878671 - L1ME1 LINE L1 -5622 1233 1035 335 335 78 23 chrX 39095805 39096023 -137878117 - L1ME1 LINE L1 -6617 242 13 1146 261 88 16 chrX 39096093 39096468 -137877672 - MLT1H LTR MaLR -2 547 146 957 192 80 7 chrX 39096478 39096824 -137877316 - MER61C LTR ERV1 -30 404 1 15772 103 4 4 chrX 39096824 39099411 -137874729 - MER61C-int LTR ERV1 0 5217 2554 2077 143 0 0 chrX 39099412 39099699 -137874441 + AluSx SINE Alu 1 287 -25 251 253 32 0 chrX 39101288 39101383 -137872757 - L1ME LINE L1 -298 5823 5726 1382 80 0 6 chrX 39102660 39102836 -137871304 + AluSg/x SINE Alu 122 296 -16 273 276 61 20 chrX 39103288 39103386 -137870754 - L2 LINE L2 -30 3283 3182 309 261 18 54 chrX 39103446 39103557 -137870583 + MIR SINE MIR 69 175 -87 415 411 44 35 chrX 39104378 39104716 -137869424 - L2 LINE L2 -38 3234 2894 208 349 151 0 chrX 39104754 39104880 -137869260 + L2 LINE L2 3167 3311 -2 1937 211 39 46 chrX 39105547 39106079 -137868061 + MER63C DNA MER1_type 253 830 -231 2432 68 0 3 chrX 39106079 39106386 -137867754 - AluY SINE Alu -5 306 1 1937 211 39 46 chrX 39106386 39106488 -137867652 + MER63C DNA MER1_type 830 931 0 333 206 29 0 chrX 39106879 39106981 -137867159 + GA-rich Low_complexity Low_complexity 1 105 0 241 246 0 43 chrX 39107113 39107182 -137866958 + MIR SINE MIR 176 241 -21 * 529 260 32 19 chrX 39107180 39107334 -137866806 + MIR SINE MIR 33 188 -74 287 305 42 17 chrX 39107722 39107840 -137866300 - MIR SINE MIR -71 191 71 182 437 42 0 chrX 39107932 39108051 -137866089 + L2 LINE L2 3139 3262 -10 423 236 12 103 chrX 39108449 39108614 -137865526 + L2 LINE L2 3162 3311 -2 184 302 69 43 chrX 39108743 39108859 -137865281 + MIR SINE MIR 19 137 -125 546 285 0 33 chrX 39108890 39109041 -137865099 - L2 LINE L2 0 3272 3127 264 292 66 59 chrX 39109620 39109789 -137864351 - MIR SINE MIR -37 171 2 186 245 53 75 chrX 39111163 39111257 -137862883 + L2 LINE L2 3143 3234 -38 32 81 0 0 chrX 39111483 39111557 -137862583 + AT_rich Low_complexity Low_complexity 1 74 0 23 54 0 0 chrX 39111565 39111602 -137862538 + AT_rich Low_complexity Low_complexity 1 37 0 431 261 97 34 chrX 39111615 39111791 -137862349 - MIR SINE MIR -48 214 28 294 235 71 55 chrX 39113075 39113194 -137860946 + MIR SINE MIR 1 112 -96 236 304 0 0 chrX 39113195 39113251 -137860889 - L2 LINE L2 0 3313 3258 * 270 148 98 0 chrX 39113239 39113300 -137860840 + MIR SINE MIR 98 164 -98 211 309 138 32 chrX 39113412 39113535 -137860605 + L2 LINE L2 3137 3272 0 497 281 57 0 chrX 39114403 39114631 -137859509 + MER113 DNA MER1_type? 6 246 -275 502 269 7 7 chrX 39115726 39115867 -137858273 + MLT2F LTR ERVL 1 141 -522 680 219 38 22 chrX 39115871 39116054 -137858086 + MLT1E3 LTR MaLR 46 231 -393 466 249 53 112 chrX 39115887 39116261 -137857879 + MLT2C1 LTR ERVL 44 395 -2 * 2414 77 3 0 chrX 39116330 39116628 -137857512 - AluSg SINE Alu -11 299 1 268 288 45 45 chrX 39117089 39117221 -137856919 - L2 LINE L2 -227 3045 2914 258 297 32 19 chrX 39117733 39117888 -137856252 - L1ME LINE L1 -233 5888 5732 271 247 0 25 chrX 39117899 39117980 -137856160 + L1MC4a LINE L1 5860 5938 -1870 216 109 65 22 chrX 39118776 39118822 -137855318 + GA-rich Low_complexity Low_complexity 1 48 0 646 253 83 75 chrX 39118944 39119102 -137855038 + MIR SINE MIR 1 156 -106 2989 104 9 2 chrX 39119102 39119533 -137854607 + MER57B LTR ERV1 1 434 0 646 253 83 75 chrX 39119533 39119549 -137854591 + MIR SINE MIR 156 170 -92 2263 81 10 0 chrX 39119549 39119844 -137854296 + AluSx SINE Alu 1 298 -14 646 253 83 75 chrX 39119844 39119921 -137854219 + MIR SINE MIR 170 255 -7 21 0 0 0 chrX 39120168 39120189 -137853951 + AT_rich Low_complexity Low_complexity 1 21 0 2109 122 10 0 chrX 39120332 39120626 -137853514 - AluSx SINE Alu -15 297 1 24 32 0 0 chrX 39121009 39121040 -137853100 + AT_rich Low_complexity Low_complexity 1 31 0 2354 89 0 0 chrX 39121708 39122000 -137852140 - AluSg SINE Alu -18 292 1 330 323 16 8 chrX 39122005 39122132 -137852008 + L1ME LINE L1 332 459 -5611 277 305 10 61 chrX 39122234 39122431 -137851709 + L1ME LINE L1 467 653 -5417 3337 42 10 2 chrX 39122574 39122984 -137851156 + L1PA5 LINE L1 5737 6149 -5 361 212 176 32 chrX 39123039 39123193 -137850947 - MER41B LTR ERV1 -251 341 97 470 286 26 28 chrX 39123275 39123557 -137850583 - L1MC4 LINE L1 -725 7236 7001 200 182 0 0 chrX 39123589 39123622 -137850518 + CT-rich Low_complexity Low_complexity 2 34 0 987 231 64 25 chrX 39123633 39123914 -137850226 - L1MC4 LINE L1 -982 7060 6769 4624 211 98 58 chrX 39123934 39124242 -137849898 - L1MD2 LINE L1 -9 6350 6056 983 24 60 0 chrX 39124242 39124409 -137849731 + (TA)n Simple_repeat Simple_repeat 2 178 0 4624 211 98 58 chrX 39124409 39125324 -137848816 - L1MD2 LINE L1 -303 6056 5179 1929 145 0 3 chrX 39125324 39125613 -137848527 - AluJb SINE Alu -24 288 1 4624 211 98 58 chrX 39125613 39126204 -137847936 - L1MD2 LINE L1 -1180 5179 4613 1166 211 47 76 chrX 39126204 39126587 -137847553 - MLT1A2 LTR MaLR -2 372 1 4624 211 98 58 chrX 39126587 39127645 -137846495 - L1MD2 LINE L1 -1746 4613 3336 2343 68 3 7 chrX 39127645 39127978 -137846162 - AluSp SINE Alu 0 313 1 4624 211 98 58 chrX 39127978 39128189 -137845951 - L1MD2 LINE L1 -3023 3336 3135 1588 113 0 13 chrX 39128189 39128420 -137845720 - AluSg/x SINE Alu -3 309 82 23 0 0 0 chrX 39128545 39128568 -137845572 + AT_rich Low_complexity Low_complexity 1 23 0 7539 95 16 19 chrX 39128568 39129747 -137844393 - MER61-int LTR ERV1 -2649 2568 1393 1978 111 12 43 chrX 39129752 39129996 -137844144 - MER61-int LTR ERV1 -3945 1272 1022 2051 144 0 0 chrX 39129996 39130288 -137843852 + AluSg SINE Alu 1 292 -18 2249 106 30 0 chrX 39130290 39130592 -137843548 + AluSp SINE Alu 2 312 -1 1978 111 12 43 chrX 39130592 39130669 -137843471 - MER61-int LTR ERV1 -4196 1021 958 623 85 0 11 chrX 39130669 39130763 -137843377 - MER61-int LTR ERV1 -4377 840 748 301 271 0 0 chrX 39130764 39130834 -137843306 - tRNA-Glu-GAG tRNA tRNA -5 70 1 640 264 23 29 chrX 39130834 39131008 -137843132 - MER61B-int LTR ERV1 -4864 353 181 734 102 8 34 chrX 39131037 39131155 -137842985 - MER61B-int LTR ERV1 -5102 115 1 1545 171 148 39 chrX 39131163 39131520 -137842620 - MER61B LTR ERV1 -29 396 1 225 336 131 8 chrX 39131832 39131954 -137842186 - MIR SINE MIR -106 156 20 1242 199 8 17 chrX 39132357 39132598 -137841542 + MER8 DNA MER2_type 1 239 0 1962 163 0 0 chrX 39132826 39133121 -137841019 + AluJb SINE Alu 1 295 -17 476 321 54 60 chrX 39133708 39134060 -137840080 + L1M4 LINE L1 4061 4410 -1736 275 125 0 36 chrX 39134449 39134505 -137839635 + L1M4 LINE L1 4580 4633 -1513 245 241 139 0 chrX 39134814 39134893 -137839247 - MIR SINE MIR 0 262 173 2061 129 0 4 chrX 39135137 39135440 -137838700 - AluSc SINE Alu 0 304 3 311 313 0 0 chrX 39135502 39135585 -137838555 + MIR SINE MIR 45 127 -135 274 328 55 16 chrX 39135987 39136115 -137838025 - L2 LINE L2 -19 3294 3162 246 241 0 0 chrX 39136910 39136968 -137837172 + L2 LINE L2 3256 3313 0 207 400 0 29 chrX 39136951 39137021 -137837119 + L2 LINE L2 3119 3186 -86 * 183 345 179 0 chrX 39137204 39137288 -137836852 + L2 LINE L2 3142 3240 -32 236 301 21 0 chrX 39137307 39137400 -137836740 + MER113 DNA MER1_type? 1 95 -426 405 314 124 5 chrX 39137521 39137706 -137836434 - MIR SINE MIR -16 246 40 3430 108 6 12 chrX 39138535 39139034 -137835106 + MER39B LTR ERV1 158 653 0 303 288 72 32 chrX 39139046 39139171 -137834969 - MIR SINE MIR -41 221 92 314 191 94 30 chrX 39139471 39139614 -137834526 + LTR48 LTR ERV1 449 737 -49 1854 146 3 94 chrX 39139686 39140057 -137834083 - MER1B DNA MER1_type 0 337 1 236 163 143 0 chrX 39140385 39140434 -137833706 + MIR SINE MIR 93 148 -114 24 32 0 0 chrX 39140620 39140651 -137833489 + AT_rich Low_complexity Low_complexity 1 31 0 330 308 38 25 chrX 39141175 39141386 -137832754 - MIR SINE MIR -1 261 53 311 225 50 83 chrX 39141392 39141512 -137832628 + MER63 DNA MER1_type 2 743 -319 332 268 62 39 chrX 39141551 39141567 -137832573 + MIR SINE MIR 74 88 -174 2210 179 0 3 chrX 39141567 39141931 -137832209 + MLT1A1 LTR MaLR 3 365 0 332 268 62 39 chrX 39141931 39142093 -137832047 + MIR SINE MIR 88 256 -6 1670 189 102 50 chrX 39142981 39143423 -137830717 + MER31B LTR ERV1 1 543 0 5139 200 63 57 chrX 39143473 39143865 -137830275 + MER31B-int LTR ERV1 15 403 -4533 3852 186 35 1 chrX 39143865 39144573 -137829567 + MER44D DNA MER2_type 1 604 -1 5139 200 63 57 chrX 39144573 39145472 -137828668 + MER31B-int LTR ERV1 403 1314 -3622 2504 215 36 0 chrX 39146002 39146496 -137827644 + LTR53 LTR ERVL 1 512 -7 430 331 19 31 chrX 39146515 39146675 -137827465 - MIR SINE MIR -90 172 15 2155 109 7 0 chrX 39146762 39147047 -137827093 - AluSx SINE Alu -25 287 1 1954 86 0 0 chrX 39147070 39147313 -137826827 - AluSq SINE Alu -15 298 56 25129 123 9 8 chrX 39147314 39152118 -137822022 + L1PA8A LINE L1 1319 6119 -12 21 57 0 0 chrX 39152118 39152153 -137821987 + AT_rich Low_complexity Low_complexity 1 35 0 757 209 85 25 chrX 39152489 39152656 -137821484 - L1M4 LINE L1 -2780 3366 3174 839 181 81 0 chrX 39152656 39152816 -137821324 + FAM SINE Alu 1 173 -2 757 209 85 25 chrX 39152816 39152931 -137821209 - L1M4 LINE L1 -2972 3174 3067 * 6626 234 49 15 chrX 39152910 39155537 -137818603 - L1MB8 LINE L1 0 6178 3445 2254 111 7 0 chrX 39155537 39155844 -137818296 - AluSg SINE Alu -1 309 1 6626 234 49 15 chrX 39155844 39155969 -137818171 - L1MB8 LINE L1 -2733 3445 3326 1295 52 0 13 chrX 39156069 39156224 -137817916 - AluY SINE Alu -158 153 1 549 302 11 11 chrX 39156224 39156502 -137817638 - L1MB8 LINE L1 -2906 3240 2963 1175 187 60 87 chrX 39156507 39156644 -137817496 - L1MD2 LINE L1 -103 6650 6511 1936 90 45 64 chrX 39156644 39156955 -137817185 - AluSx SINE Alu -7 305 1 1175 187 60 87 chrX 39156955 39157186 -137816954 - L1MD2 LINE L1 -242 6511 6292 7495 47 2 0 chrX 39157186 39158886 -137815254 - L1PA5 LINE L1 -5 6149 4447 6335 233 38 17 chrX 39158896 39161187 -137812953 + L1MC/D LINE L1 3401 5741 -603 1613 138 20 0 chrX 39161187 39161440 -137812700 - MSTC LTR MaLR 0 428 171 10467 40 0 1 chrX 39161440 39162748 -137811392 - L1P LINE L1 -2220 3926 2620 1165 239 95 6 chrX 39162746 39163260 -137810880 - L1MD2 LINE L1 -449 6304 5609 * 1113 253 114 35 chrX 39163266 39164141 -137809999 - L1MD2 LINE L1 -3748 2793 1860 6078 103 13 32 chrX 39164162 39165340 -137808800 - L1PA10 LINE L1 0 6168 5011 414 132 33 22 chrX 39365342 39365433 -137608707 - L1M3e LINE L1 -4985 2045 1954 2382 85 0 31 chrX 39365444 39365761 -137608379 - AluSx SINE Alu -5 307 1 2019 129 0 20 chrX 39365789 39366083 -137608057 - AluJb SINE Alu -22 290 3 754 127 0 8 chrX 39366108 39366226 -137607914 - FLAM_C SINE Alu -25 118 2 6449 179 235 20 chrX 39366227 39367834 -137606306 - L1M3e LINE L1 -5072 1958 6 267 208 47 47 chrX 39367883 39367989 -137606151 - L1M4 LINE L1 -5557 1298 1193 1065 273 32 43 chrX 39368066 39368411 -137605729 - L1M4 LINE L1 -5667 1188 848 467 267 52 30 chrX 39368443 39368688 -137605452 - L1M4 LINE L1 -6306 549 16 329 250 62 28 chrX 39368693 39368837 -137605303 + L2 LINE L2 1678 1826 -1488 2260 113 10 0 chrX 39368880 39369181 -137604959 + AluSx SINE Alu 1 304 -8 1705 250 132 18 chrX 39369441 39369470 -137604670 - L1ME3A LINE L1 -233 5920 5896 189 0 0 0 chrX 39369470 39369491 -137604649 + (TG)n Simple_repeat Simple_repeat 2 22 0 2414 74 7 16 chrX 39369491 39369800 -137604340 - AluSx SINE Alu -6 306 1 1705 250 132 18 chrX 39369800 39370361 -137603779 - L1ME3A LINE L1 -257 5896 5401 1980 155 0 0 chrX 39370361 39370657 -137603483 + AluJb SINE Alu 3 298 -14 586 246 15 22 chrX 39370657 39370785 -137603355 - FLAM_A SINE Alu -6 127 1 1705 250 132 18 chrX 39370785 39370915 -137603225 - L1ME3A LINE L1 -751 5402 5140 1396 112 8 80 chrX 39370915 39371164 -137602976 - AluJb SINE Alu 0 312 82 870 261 123 74 chrX 39371229 39371594 -137602546 - L1ME3A LINE L1 -1066 5063 4718 1685 170 11 7 chrX 39371594 39371899 -137602241 - AluJb SINE Alu 0 306 1 870 261 123 74 chrX 39371899 39371932 -137602208 - L1ME3A LINE L1 -1411 4718 4688 1836 155 7 3 chrX 39371932 39372216 -137601924 - AluJb SINE Alu -27 285 1 870 261 123 74 chrX 39372216 39372562 -137601578 - L1ME3A LINE L1 -1441 4688 4280 217 0 29 29 chrX 39372584 39372618 -137601522 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1891 95 4 4 chrX 39372629 39372871 -137601269 - AluSx SINE Alu -39 273 32 2338 93 0 7 chrX 39372871 39373181 -137600959 - AluSx SINE Alu -4 308 1 3401 184 88 80 chrX 39373190 39374220 -137599920 - L1MC3 LINE L1 0 7785 6747 1409 263 99 31 chrX 39374225 39374925 -137599215 - L1ME3A LINE L1 -1890 4239 3493 3482 266 85 37 chrX 39375957 39377969 -137596171 - L1MEd LINE L1 -2629 3500 1312 354 45 0 0 chrX 39377969 39378013 -137596127 + (TAG)n Simple_repeat Simple_repeat 3 46 0 3482 266 85 37 chrX 39378013 39378519 -137595621 - L1MEd LINE L1 -4817 1312 832 700 207 20 25 chrX 39378520 39378718 -137595422 - HAL1 LINE L1 -331 2176 1980 1824 220 49 27 chrX 39378729 39379320 -137594820 + L2 LINE L2 2709 3313 0 234 327 44 0 chrX 39379958 39380071 -137594069 - L3 LINE CR1 -785 792 675 302 317 142 42 chrX 39380098 39380338 -137593802 - L2 LINE L2 -5 3267 3004 282 285 44 24 chrX 39380344 39380488 -137593652 - L1MDa LINE L1 -2299 4241 4093 2314 87 33 0 chrX 39380937 39381116 -137593024 - AluY SINE Alu -1 310 116 297 0 0 0 chrX 39381116 39381149 -137592991 + (TG)n Simple_repeat Simple_repeat 2 34 0 2314 87 33 0 chrX 39381149 39381269 -137592871 - AluY SINE Alu -195 116 1 343 279 79 64 chrX 39381301 39381566 -137592574 - L1MDa LINE L1 -4540 2000 1732 332 200 0 96 chrX 39381590 39381725 -137592415 - HAL1 LINE L1 -1441 1066 945 2051 134 0 0 chrX 39381730 39382047 -137592093 - AluSx SINE Alu 0 317 1 504 219 121 125 chrX 39382252 39382362 -137591778 + MIR SINE MIR 8 117 -145 390 85 34 0 chrX 39382362 39382421 -137591719 + U7 snRNA snRNA 2 62 -1 504 219 121 125 chrX 39382421 39382566 -137591574 + MIR SINE MIR 117 262 0 3890 199 47 25 chrX 39383229 39384150 -137589990 + L1ME LINE L1 3723 4663 -1483 320 346 28 28 chrX 39384278 39384489 -137589651 + L1ME LINE L1 5324 5534 -632 1887 171 10 0 chrX 39384967 39385265 -137588875 + AluJo SINE Alu 2 302 -10 2378 98 0 0 chrX 39385960 39386257 -137587883 + AluSq SINE Alu 1 297 -16 2122 103 3 3 chrX 39388105 39388418 -137585722 - AluSq SINE Alu 0 313 1 1018 128 70 0 chrX 39388418 39388574 -137585566 - FRAM SINE Alu -9 167 1 342 0 0 0 chrX 39388574 39388612 -137585528 + (TA)n Simple_repeat Simple_repeat 2 39 0 1849 160 14 0 chrX 39388612 39388920 -137585220 - AluSq SINE Alu 0 312 1 309 298 109 34 chrX 39388971 39389293 -137584847 - L1MDa LINE L1 -2451 4089 3744 379 100 0 0 chrX 39389321 39389371 -137584769 + Alu SINE Alu 1 50 -252 2343 71 3 17 chrX 39389372 39389666 -137584474 + AluSp SINE Alu 10 299 -14 284 224 30 18 chrX 39389773 39389938 -137584202 - L1MDa LINE L1 -2859 3681 3515 1061 118 0 0 chrX 39389941 39390093 -137584047 - AluSp/q SINE Alu -5 308 157 17680 31 3 6 chrX 39390193 39392365 -137581775 + L1P LINE L1 2459 4623 -1523 2305 87 33 0 chrX 39392900 39393078 -137581062 - AluY SINE Alu -2 309 116 297 0 0 0 chrX 39393078 39393111 -137581029 + (TG)n Simple_repeat Simple_repeat 2 34 0 2305 87 33 0 chrX 39393111 39393231 -137580909 - AluY SINE Alu -195 116 1 360 276 79 64 chrX 39393263 39393528 -137580612 - L1MDa LINE L1 -4540 2000 1732 332 200 0 96 chrX 39393552 39393687 -137580453 - HAL1 LINE L1 -1441 1066 945 2051 134 0 0 chrX 39393692 39394009 -137580131 - AluSx SINE Alu 0 317 1 493 223 121 125 chrX 39394214 39394324 -137579816 + MIR SINE MIR 8 117 -145 390 85 34 0 chrX 39394324 39394383 -137579757 + U7 snRNA snRNA 2 62 -1 493 223 121 125 chrX 39394383 39394528 -137579612 + MIR SINE MIR 117 262 0 3890 199 47 25 chrX 39395191 39396112 -137578028 + L1ME LINE L1 3723 4663 -1483 320 346 28 28 chrX 39396240 39396451 -137577689 + L1ME LINE L1 5324 5534 -632 1887 171 10 0 chrX 39396929 39397227 -137576913 + AluJo SINE Alu 2 302 -10 2385 95 0 0 chrX 39397922 39398218 -137575922 + AluSq SINE Alu 1 296 -17 2023 86 52 4 chrX 39400065 39400365 -137573775 - AluSp SINE Alu 0 313 1 1249 79 7 0 chrX 39400391 39400543 -137573597 + AluSp SINE Alu 1 153 -160 1465 101 5 0 chrX 39400545 39400734 -137573406 + AluSp SINE Alu 112 301 -12 704 299 108 29 chrX 39400737 39400942 -137573198 + L1ME LINE L1 4763 4950 -1196 2229 106 0 22 chrX 39400942 39401253 -137572887 + AluSx SINE Alu 1 304 -8 704 299 108 29 chrX 39401253 39401536 -137572604 + L1ME LINE L1 4950 5290 -856 1535 195 13 33 chrX 39401547 39401854 -137572286 + AluJo SINE Alu 1 301 -11 181 79 0 53 chrX 39401854 39401892 -137572248 + (GGA)n Simple_repeat Simple_repeat 1 36 0 646 287 61 65 chrX 39401913 39402225 -137571915 + L1ME LINE L1 5290 5601 -563 2203 117 0 13 chrX 39402225 39402532 -137571608 + AluSx SINE Alu 1 303 -9 646 287 61 65 chrX 39402532 39402662 -137571478 + L1ME LINE L1 5601 5730 -434 21 57 0 0 chrX 39402805 39402840 -137571300 + AT_rich Low_complexity Low_complexity 1 35 0 2193 130 3 0 chrX 39402890 39403190 -137570950 + AluSq SINE Alu 1 301 -12 198 270 0 0 chrX 39403581 39403655 -137570485 + CT-rich Low_complexity Low_complexity 1 74 0 2370 94 0 0 chrX 39404327 39404624 -137569516 - AluSg SINE Alu -13 297 1 1841 156 7 0 chrX 39406134 39406416 -137567724 + AluSx SINE Alu 11 294 -18 1882 121 0 0 chrX 39406424 39406672 -137567468 + AluSx SINE Alu 1 248 -64 28231 50 11 0 chrX 39407029 39410487 -137563653 + L1PA4 LINE L1 2 3497 -2649 8418 31 4 7 chrX 39410499 39412260 -137561880 + L1PA4 LINE L1 4393 6152 -3 42 65 0 0 chrX 39412362 39412439 -137561701 + AT_rich Low_complexity Low_complexity 1 77 0 691 164 55 0 chrX 39412439 39412567 -137561573 - AluJo SINE Alu -176 136 2 890 228 0 0 chrX 39412583 39412741 -137561399 + FAM SINE Alu 1 158 -17 1604 215 85 57 chrX 39412811 39413317 -137560823 - MLT2B1 LTR ERVL 0 520 1 13202 143 26 16 chrX 39413317 39415969 -137558171 - ERVL-B1 LTR ERVL -7 5757 3133 2317 138 25 0 chrX 39415969 39416324 -137557816 - THE1B LTR MaLR 0 364 1 13202 143 26 16 chrX 39416324 39416409 -137557731 - ERVL-B1 LTR ERVL -2631 3133 3050 718 200 0 15 chrX 39416409 39416539 -137557601 + FLAM_C SINE Alu 1 128 -5 2221 104 0 7 chrX 39416543 39416851 -137557289 + AluSx SINE Alu 1 306 -6 13202 143 26 16 chrX 39416851 39417073 -137557067 - ERVL-B1 LTR ERVL -2716 3048 2830 1843 173 0 10 chrX 39417073 39417386 -137556754 + AluJo SINE Alu 3 312 0 13202 143 26 16 chrX 39417386 39417717 -137556423 - ERVL-B1 LTR ERVL -2934 2830 2504 2661 141 26 60 chrX 39417717 39418220 -137555920 - LTR19A LTR ERV1 0 486 1 13202 143 26 16 chrX 39418220 39418794 -137555346 - ERVL-B1 LTR ERVL -3260 2504 1784 247 180 120 0 chrX 39420097 39420147 -137553993 + AluS SINE Alu 42 97 -205 2260 73 0 0 chrX 39420452 39420739 -137553401 + AluY SINE Alu 1 287 -24 2203 147 28 63 chrX 39421122 39421551 -137552589 - LTR3 LTR ERVK -14 418 5 600 137 0 11 chrX 39421555 39421650 -137552490 - HERVK3 LTR ERVK 0 7243 7150 8421 109 25 2 chrX 39421669 39422881 -137551259 - HERVK3 LTR ERVK -1885 5358 4119 * 10537 119 17 8 chrX 39422868 39424428 -137549712 - HERVK3 LTR ERVK -4333 2910 1336 6572 113 33 5 chrX 39424426 39425391 -137548749 - HERVK3 LTR ERVK -6211 1032 41 * 2304 147 25 54 chrX 39425392 39425833 -137548307 - LTR3 LTR ERVK 0 432 5 950 82 82 0 chrX 39426588 39426723 -137547417 + LTR9B LTR ERV1 1 146 -498 720 217 0 0 chrX 39426726 39426855 -137547285 - LTR8 LTR ERV1 -562 129 1 6092 75 15 15 chrX 39426855 39427657 -137546483 + HUERS-P3b LTR ERV1 3073 3874 -3544 * 16707 102 23 12 chrX 39427651 39430230 -137543910 + HUERS-P3b LTR ERV1 2124 7405 -13 1323 80 62 0 chrX 39430237 39430413 -137543727 + LTR9B LTR ERV1 1 187 -457 2122 108 16 3 chrX 39430413 39430718 -137543422 + AluSx SINE Alu 1 309 -3 828 139 21 14 chrX 39430719 39430863 -137543277 + AluJb SINE Alu 136 280 -32 267 31 0 0 chrX 39430872 39430904 -137543236 + (TATG)n Simple_repeat Simple_repeat 4 35 0 519 170 18 9 chrX 39430904 39431009 -137543131 - MLT2D LTR ERVL -305 109 1 1141 218 58 19 chrX 39431292 39431553 -137542587 - L1MC4 LINE L1 -132 7910 7640 2133 153 3 12 chrX 39432207 39432546 -137541594 - MLT1A1 LTR MaLR -18 347 12 2221 106 0 6 chrX 39433710 39434123 -137540017 + AluSx SINE Alu 1 411 0 219 36 0 0 chrX 39434123 39434151 -137539989 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 313 222 51 45 chrX 39434578 39434754 -137539386 + L1MEd LINE L1 921 1097 -5022 250 240 62 58 chrX 39434838 39435046 -137539094 + L1 LINE L1 4285 4493 -1653 2123 110 0 0 chrX 39435054 39435346 -137538794 + AluSq SINE Alu 2 293 -20 1408 165 0 0 chrX 39435346 39435570 -137538570 + AluJb SINE Alu 83 306 -6 1752 145 11 0 chrX 39435579 39435855 -137538285 + AluJb SINE Alu 19 297 -15 1210 255 88 84 chrX 39435859 39436168 -137537972 + L1ME3A LINE L1 4496 4802 -1360 2136 88 6 44 chrX 39436168 39436486 -137537654 + AluSx SINE Alu 1 306 -6 1210 255 88 84 chrX 39436486 39436759 -137537381 + L1ME3A LINE L1 4802 5072 -1090 832 110 0 59 chrX 39436759 39436895 -137537245 - FLAM_C SINE Alu -5 128 1 1210 255 88 84 chrX 39436895 39437204 -137536936 + L1ME3A LINE L1 5072 5378 -784 1527 143 37 50 chrX 39437204 39437504 -137536636 + AluJo SINE Alu 1 296 -16 1210 255 88 84 chrX 39437504 39437779 -137536361 + L1ME3A LINE L1 5378 5669 -493 2323 90 0 0 chrX 39437779 39438079 -137536061 + AluSx SINE Alu 1 300 -12 1210 255 88 84 chrX 39438079 39438214 -137535926 + L1ME3A LINE L1 5669 5802 -360 1536 136 122 18 chrX 39438214 39438500 -137535640 - LOR1a LTR ERV1 0 497 182 991 164 26 36 chrX 39438486 39438681 -137535459 - LOR1b LTR ERV1 -190 271 79 * 556 230 51 22 chrX 39438708 39438886 -137535254 + L1ME3A LINE L1 5798 5980 -190 811 191 0 0 chrX 39438978 39439114 -137535026 + AluJo SINE Alu 2 137 -175 568 114 0 88 chrX 39439114 39439228 -137534912 + MER50 LTR ERV1 497 600 -134 956 153 18 24 chrX 39439229 39439399 -137534741 + AluJo SINE Alu 121 289 -23 1743 149 7 0 chrX 39439891 39440167 -137533973 - AluJb SINE Alu -34 278 1 1053 217 4 0 chrX 39440602 39440828 -137533312 + L1MC1 LINE L1 4962 5188 -958 983 98 8 0 chrX 39440829 39440962 -137533178 + AluSq/x SINE Alu 3 136 -176 2125 112 3 0 chrX 39440965 39441261 -137532879 + AluSq SINE Alu 3 299 -14 539 125 0 0 chrX 39441272 39441352 -137532788 + AluSg/x SINE Alu 219 298 -14 6633 125 26 9 chrX 39441352 39441502 -137532638 + L1MC1 LINE L1 5181 5327 -1006 657 204 15 8 chrX 39441502 39441634 -137532506 + FLAM_A SINE Alu 1 133 0 6633 125 26 9 chrX 39441634 39442591 -137531549 + L1MC1 LINE L1 5327 6312 -21 1747 134 25 4 chrX 39442591 39442730 -137531410 - AluSx SINE Alu -30 282 148 2104 38 8 8 chrX 39442730 39442992 -137531148 - AluY SINE Alu -3 308 47 1747 134 25 4 chrX 39442992 39443128 -137531012 - AluSx SINE Alu -164 148 1 27 0 0 0 chrX 39443128 39443155 -137530985 + AT_rich Low_complexity Low_complexity 1 27 0 460 331 39 31 chrX 39443187 39443444 -137530696 + ERVL LTR ERVL 445 703 -5061 388 275 100 31 chrX 39443492 39443652 -137530488 + ERVL LTR ERVL 852 1022 -4742 302 65 0 0 chrX 39443660 39443706 -137530434 + Alu SINE Alu 257 302 0 2351 53 0 0 chrX 39443804 39444088 -137530052 - AluY SINE Alu -17 294 11 2266 79 7 0 chrX 39444089 39444393 -137529747 - AluSp SINE Alu -7 306 1 3505 190 156 17 chrX 39444434 39444447 -137529693 - L1M4 LINE L1 -798 5348 5338 1726 91 4 0 chrX 39444447 39444677 -137529463 - AluSx SINE Alu -81 231 1 3505 190 156 17 chrX 39444677 39445153 -137528987 - L1M4 LINE L1 -808 5338 4930 1617 139 0 93 chrX 39445153 39445477 -137528663 + AluJo SINE Alu 1 294 -18 3505 190 156 17 chrX 39445477 39445571 -137528569 - L1M4 LINE L1 -1216 4930 4850 2249 83 0 19 chrX 39445571 39445883 -137528257 - AluSg SINE Alu -4 306 1 3505 190 156 17 chrX 39445883 39446239 -137527901 - L1M4 LINE L1 -1296 4850 4276 1805 156 0 20 chrX 39446250 39446552 -137527588 - AluJo SINE Alu -16 296 1 1334 188 4 4 chrX 39446554 39446820 -137527320 - L1M4 LINE L1 -2222 3924 3659 318 360 17 24 chrX 39446821 39447118 -137527022 + ERVL LTR ERVL 1091 1385 -4379 1025 248 113 39 chrX 39447119 39447534 -137526606 + MLT1J1 LTR MaLR 1 446 0 913 239 124 32 chrX 39447875 39448223 -137525917 + ERVL LTR ERVL 1761 2140 -3345 2343 249 96 14 chrX 39448520 39449252 -137524888 + ERVL LTR ERVL 3522 4313 -1451 647 193 13 145 chrX 39449405 39449633 -137524507 + MLT1E-int LTR MaLR 974 1171 -200 850 133 30 0 chrX 39449633 39449768 -137524372 + FLAM_C SINE Alu 1 139 -4 2140 60 60 0 chrX 39449771 39450052 -137524088 - AluY SINE Alu -13 298 1 365 311 68 6 chrX 39450081 39450258 -137523882 + MLT1E-int LTR MaLR 1160 1347 -24 2171 183 101 68 chrX 39450289 39450391 -137523749 + MLT1E LTR MaLR 10 107 -486 2241 78 7 0 chrX 39450391 39450684 -137523456 - AluSp SINE Alu -17 296 2 2171 183 101 68 chrX 39450684 39451144 -137522996 + MLT1E LTR MaLR 107 591 -2 553 261 37 8 chrX 39451146 39451280 -137522860 + ERVL LTR ERVL 4173 4310 -1454 243 241 228 0 chrX 39452191 39452270 -137521870 - L2 LINE L2 -191 3081 2985 706 160 16 44 chrX 39453247 39453568 -137520572 + L1MB8 LINE L1 5819 6178 0 181 221 74 147 chrX 39453736 39453786 -137520354 - L2 LINE L2 -568 2746 2705 432 141 0 0 chrX 39453786 39453857 -137520283 + L1MB7 LINE L1 6105 6175 -9 181 221 74 147 chrX 39453857 39453901 -137520239 - L2 LINE L2 -609 2705 2659 210 202 146 45 chrX 39454008 39454097 -137520043 - MIR3 SINE MIR -103 105 8 25 0 0 0 chrX 39454210 39454235 -137519905 + AT_rich Low_complexity Low_complexity 1 25 0 248 281 16 0 chrX 39454513 39454577 -137519563 + GA-rich Low_complexity Low_complexity 3 67 0 423 247 21 0 chrX 39459314 39459407 -137514733 - MER5B DNA MER1_type -4 174 80 264 330 113 9 chrX 39459334 39459449 -137514691 + MER5A DNA MER1_type 36 162 -27 * 655 274 38 28 chrX 39462024 39462236 -137511904 + MIR SINE MIR 49 262 0 195 220 80 0 chrX 39462278 39462328 -137511812 - MIR SINE MIR -63 145 92 287 291 110 16 chrX 39463170 39463297 -137510843 - MIR SINE MIR -54 208 70 261 302 162 22 chrX 39463336 39463515 -137510625 - MIR SINE MIR 0 262 59 345 247 163 24 chrX 39464388 39464554 -137509586 - HAL1 LINE L1 -1 2506 2318 3259 224 171 60 chrX 39464560 39464926 -137509214 - HAL1 LINE L1 -458 2049 1725 2309 32 42 3 chrX 39464926 39465210 -137508930 - AluY SINE Alu -15 296 2 3259 224 171 60 chrX 39465210 39465871 -137508269 - HAL1 LINE L1 -782 1725 1139 1799 110 88 0 chrX 39465871 39466143 -137507997 - AluSx SINE Alu -11 301 6 3259 224 171 60 chrX 39466143 39466610 -137507530 - HAL1 LINE L1 -1368 1139 725 2512 62 0 0 chrX 39466610 39466901 -137507239 - AluY SINE Alu -20 291 1 3259 224 171 60 chrX 39466901 39467238 -137506902 - HAL1 LINE L1 -1782 725 1 248 307 79 18 chrX 39467252 39467366 -137506774 + L1MB7 LINE L1 5480 5600 -521 357 192 64 0 chrX 39467395 39467473 -137506667 - L1M4 LINE L1 -1569 4577 4495 23 0 0 0 chrX 39467957 39467980 -137506160 + AT_rich Low_complexity Low_complexity 1 23 0 1519 178 178 10 chrX 39468191 39468591 -137505549 + L1MB7 LINE L1 5718 6184 0 1487 154 24 48 chrX 39468635 39468688 -137505452 - MER33 DNA MER1_type -2261 324 271 2423 109 0 0 chrX 39468688 39468999 -137505141 + AluSx SINE Alu 2 312 0 2444 82 0 7 chrX 39469004 39469307 -137504833 + AluSq SINE Alu 7 307 -6 1487 154 24 48 chrX 39469307 39469579 -137504561 - MER33 DNA MER1_type -2318 267 1 2448 61 0 61 chrX 39469774 39470104 -137504036 + AluSx SINE Alu 3 312 0 367 346 58 0 chrX 39470479 39470583 -137503557 + L1MC4 LINE L1 6603 6712 -1330 2459 75 3 7 chrX 39470605 39470910 -137503230 - AluSx SINE Alu -8 304 1 2431 97 0 3 chrX 39470911 39471222 -137502918 - AluSx SINE Alu -2 310 1 25 0 0 0 chrX 39471492 39471517 -137502623 + AT_rich Low_complexity Low_complexity 1 25 0 921 281 78 8 chrX 39472021 39472277 -137501863 + MLT1J LTR MaLR 1 274 -237 309 260 83 0 chrX 39473328 39473424 -137500716 - MIR SINE MIR -60 202 99 320 282 176 0 chrX 39473442 39473584 -137500556 - MIR SINE MIR -27 235 69 2503 74 3 0 chrX 39474409 39474708 -137499432 - AluSg SINE Alu -10 300 1 2358 101 0 3 chrX 39474825 39475132 -137499008 + AluSx SINE Alu 1 306 -6 201 167 0 0 chrX 39475458 39475494 -137498646 + (TATG)n Simple_repeat Simple_repeat 4 39 0 335 240 127 27 chrX 39475908 39476058 -137498082 + L1ME4a LINE L1 5882 6046 -75 2230 111 0 10 chrX 39476067 39476365 -137497775 - AluJb SINE Alu -17 295 1 614 274 77 83 chrX 39477144 39477666 -137496474 - L2 LINE L2 -1 3271 2751 298 252 107 10 chrX 39478517 39478620 -137495520 + MIR SINE MIR 116 228 -34 349 261 34 11 chrX 39478648 39478736 -137495404 + L2 LINE L2 3147 3236 -36 977 199 0 0 chrX 39478766 39478917 -137495223 + FAM SINE Alu 1 151 -34 180 0 0 0 chrX 39478924 39478944 -137495196 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2033 142 14 0 chrX 39480681 39480976 -137493164 - AluJb SINE Alu -8 304 6 288 233 165 19 chrX 39481056 39481159 -137492981 - MIR SINE MIR -42 220 103 221 376 21 0 chrX 39481185 39481278 -137492862 + MIR SINE MIR 36 130 -78 610 167 0 0 chrX 39482012 39482108 -137492032 - FLAM_C SINE Alu -15 128 33 223 320 97 0 chrX 39482818 39482921 -137491219 - MIR SINE MIR -66 142 30 352 301 142 0 chrX 39483415 39483528 -137490612 + MIR SINE MIR 20 148 -114 467 316 50 1 chrX 39484100 39484267 -137489873 - MIR3 SINE MIR -28 180 4 278 280 243 23 chrX 39486249 39486463 -137487677 - MIR SINE MIR -1 261 1 246 299 231 8 chrX 39488486 39488603 -137485537 + L2 LINE L2 3129 3271 -1 285 239 151 24 chrX 39488835 39488976 -137485164 + MIR SINE MIR 16 138 -124 193 107 0 0 chrX 39488976 39489004 -137485136 + L2 LINE L2 3223 3250 -22 285 239 151 24 chrX 39489004 39489020 -137485120 + MIR SINE MIR 138 262 0 185 286 48 89 chrX 39489043 39489211 -137484929 - MIR SINE MIR -3 259 99 322 278 49 32 chrX 39489401 39489528 -137484612 - MIR SINE MIR -28 180 70 201 171 0 24 chrX 39489701 39489742 -137484398 + (TGG)n Simple_repeat Simple_repeat 3 42 0 237 304 0 0 chrX 39489866 39489922 -137484218 + MIR SINE MIR 16 71 -137 485 282 8 0 chrX 39490022 39490139 -137484001 - L2 LINE L2 0 3313 3196 335 250 62 0 chrX 39490157 39490253 -137483887 + MIR SINE MIR 96 197 -65 657 156 55 16 chrX 39490282 39490410 -137483730 - MIR SINE MIR -93 169 37 206 342 35 9 chrX 39490781 39490895 -137483245 + L2 LINE L2 2513 2629 -685 320 257 109 10 chrX 39490897 39490998 -137483142 + L1MC4 LINE L1 6586 6696 -1346 551 168 174 0 chrX 39491031 39491180 -137482960 + L1MC4 LINE L1 6997 7171 -871 1423 165 97 36 chrX 39491235 39491526 -137482614 + L1MC4 LINE L1 6762 7034 -1008 1929 147 27 3 chrX 39491526 39491818 -137482322 + AluJo SINE Alu 1 299 -13 1423 165 97 36 chrX 39491818 39491996 -137482144 + L1MC4 LINE L1 7034 7338 -704 294 298 88 56 chrX 39492143 39492358 -137481782 + L2 LINE L2 2870 3091 -181 981 207 30 5 chrX 39492448 39492651 -137481489 - MER3 DNA MER1_type 0 209 2 815 98 0 33 chrX 39492694 39492816 -137481324 - AluSg/x SINE Alu -3 306 189 180 0 0 0 chrX 39493171 39493191 -137480949 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 380 285 184 0 chrX 39493594 39493752 -137480388 - MIR SINE MIR -24 238 52 245 264 191 18 chrX 39494244 39494354 -137479786 + MIR SINE MIR 20 148 -60 394 302 82 6 chrX 39494636 39494795 -137479345 - MIR SINE MIR -82 180 10 26 0 0 0 chrX 39495247 39495273 -137478867 + AT_rich Low_complexity Low_complexity 1 26 0 213 39 0 0 chrX 39497093 39497119 -137477021 + (TGG)n Simple_repeat Simple_repeat 1 26 0 283 230 40 87 chrX 39497537 39497663 -137476477 - MIR3 SINE MIR -25 183 64 301 190 33 16 chrX 39498108 39498229 -137475911 + GA-rich Low_complexity Low_complexity 2 124 0 725 262 33 14 chrX 39499168 39499382 -137474758 - MIR SINE MIR -25 237 20 237 150 0 0 chrX 39499632 39499672 -137474468 + L3 LINE CR1 1195 1234 -343 396 315 102 5 chrX 39499832 39500029 -137474111 - MIR SINE MIR -13 249 34 445 183 287 18 chrX 39500057 39500221 -137473919 + L3 LINE CR1 1363 1570 -7 2045 141 13 0 chrX 39500521 39500825 -137473315 - AluJo SINE Alu -4 308 1 355 276 61 0 chrX 39502089 39502187 -137471953 + L2 LINE L2 3147 3250 -22 377 219 73 0 chrX 39502261 39502343 -137471797 - MIR SINE MIR -66 196 109 1066 146 101 0 chrX 39502367 39502566 -137471574 + MER20 DNA MER1_type 1 219 0 447 315 116 17 chrX 39502568 39502800 -137471340 + L3 LINE CR1 1212 1466 -111 2431 83 3 3 chrX 39502922 39503223 -137470917 - AluSx SINE Alu -11 301 1 2057 137 6 13 chrX 39503241 39503555 -137470585 - AluJb SINE Alu 0 312 1 394 277 59 121 chrX 39504226 39504299 -137469841 + L2 LINE L2 2950 3026 -246 2551 84 0 0 chrX 39504299 39504608 -137469532 + AluSx SINE Alu 1 309 -3 394 277 59 121 chrX 39504608 39504873 -137469267 + L2 LINE L2 3026 3267 -5 2298 110 0 10 chrX 39504876 39505185 -137468955 - AluSx SINE Alu -6 306 1 291 256 165 41 chrX 39505274 39505469 -137468671 - MIR SINE MIR -8 254 34 819 249 193 67 chrX 39505852 39506085 -137468055 + L1ME4a LINE L1 5421 5623 -498 2249 101 10 10 chrX 39506085 39506393 -137467747 + AluSc SINE Alu 1 308 -1 819 249 193 67 chrX 39506393 39506413 -137467727 + L1ME4a LINE L1 5623 5639 -482 2005 133 0 4 chrX 39506413 39506691 -137467449 + AluJb SINE Alu 24 300 -12 819 249 193 67 chrX 39506691 39507046 -137467094 + L1ME4a LINE L1 5639 6107 -14 279 54 0 0 chrX 39507084 39507121 -137467019 + (CA)n Simple_repeat Simple_repeat 2 38 0 2093 120 43 0 chrX 39507306 39507605 -137466535 + AluJo SINE Alu 1 312 0 2297 123 3 0 chrX 39508000 39508309 -137465831 - AluSx SINE Alu -2 310 1 341 320 56 74 chrX 39508337 39508674 -137465466 + L2 LINE L2 2919 3249 -23 214 308 8 39 chrX 39508706 39508836 -137465304 + (TGAA)n Simple_repeat Simple_repeat 4 129 0 267 235 59 35 chrX 39508846 39508931 -137465209 + L2 LINE L2 3205 3291 -22 645 301 21 5 chrX 39509466 39509652 -137464488 - MIR SINE MIR -43 219 31 207 170 0 43 chrX 39509717 39509764 -137464376 - MIR SINE MIR -187 75 31 1017 227 11 37 chrX 39509769 39510038 -137464102 + MIR SINE MIR 1 262 0 408 287 73 15 chrX 39510052 39510188 -137463952 - MIR SINE MIR -12 250 107 235 250 9 112 chrX 39510582 39510698 -137463442 - MIR3 SINE MIR -40 168 65 330 239 0 0 chrX 39511152 39511223 -137462917 - MIR3 SINE MIR -45 163 93 199 310 0 28 chrX 39511385 39511456 -137462684 - L3 LINE CR1 -4 1573 1505 445 323 31 0 chrX 39511614 39511744 -137462396 + MIR SINE MIR 56 189 -73 263 300 42 50 chrX 39511993 39512113 -137462027 - MIR SINE MIR -73 135 17 236 291 87 55 chrX 39512141 39512268 -137461872 - MIR3 SINE MIR -73 135 5 209 93 19 74 chrX 39512725 39512779 -137461361 + (CTGGGG)n Simple_repeat Simple_repeat 2 52 0 312 324 20 0 chrX 39513328 39513430 -137460710 + GA-rich Low_complexity Low_complexity 4 107 0 699 222 52 7 chrX 39513765 39513918 -137460222 + MLT1F LTR MaLR 1 160 -382 2184 115 3 0 chrX 39513924 39514210 -137459930 + AluJo SINE Alu 1 287 -25 2194 121 7 0 chrX 39514210 39514507 -137459633 - AluSx SINE Alu -13 299 1 46 62 0 0 chrX 39514507 39514588 -137459552 + AT_rich Low_complexity Low_complexity 1 81 0 1252 174 77 84 chrX 39514675 39514986 -137459154 + MLT1F LTR MaLR 234 542 0 248 250 0 17 chrX 39515109 39515169 -137458971 + L2 LINE L2 3254 3312 -1 406 296 78 48 chrX 39515363 39515569 -137458571 - MIR SINE MIR -6 256 45 186 399 11 16 chrX 39515627 39515810 -137458330 + L2 LINE L2 2919 3100 -172 339 211 294 0 chrX 39515939 39516048 -137458092 + MIR SINE MIR 117 257 -5 2267 110 3 3 chrX 39516195 39516495 -137457645 + AluSx SINE Alu 1 300 -12 235 232 0 21 chrX 39517375 39517470 -137456670 + GA-rich Low_complexity Low_complexity 2 94 0 186 304 223 18 chrX 39517647 39517759 -137456381 + L2 LINE L2 3134 3268 -4 1059 244 8 4 chrX 39519870 39520128 -137454012 - MIR SINE MIR -1 261 3 186 244 0 0 chrX 39520526 39520571 -137453569 + L2 LINE L2 3249 3293 -20 1918 115 41 0 chrX 39520719 39521018 -137453122 + AluSx SINE Alu 1 310 0 189 0 0 0 chrX 39521020 39521041 -137453099 + (CCA)n Simple_repeat Simple_repeat 1 21 0 2359 95 10 0 chrX 39521055 39521359 -137452781 + AluSx SINE Alu 1 307 -5 1882 154 7 7 chrX 39521369 39521661 -137452479 + AluSx SINE Alu 1 292 -20 2256 123 3 0 chrX 39521666 39521974 -137452166 + AluJb SINE Alu 2 310 -2 1120 226 91 69 chrX 39522030 39522648 -137451492 - L2 LINE L2 -4 3309 2692 620 214 48 14 chrX 39522896 39523041 -137451099 - MIR SINE MIR -66 196 47 360 266 77 7 chrX 39523421 39523564 -137450576 + MIR SINE MIR 21 173 -89 306 50 0 0 chrX 39523639 39523679 -137450461 + (CA)n Simple_repeat Simple_repeat 1 40 0 285 186 0 0 chrX 39523764 39523834 -137450306 + (CA)n Simple_repeat Simple_repeat 2 71 0 495 280 132 5 chrX 39524025 39524214 -137449926 - MIR SINE MIR 0 262 50 195 229 57 43 chrX 39524899 39524969 -137449171 + MIR3 SINE MIR 5 75 -133 461 272 8 8 chrX 39525068 39525193 -137448947 - MIR SINE MIR -126 136 12 189 247 65 13 chrX 39525346 39525423 -137448717 + L3b LINE CR1 1345 1425 -158 272 296 35 35 chrX 39525426 39525541 -137448599 - MIR3 SINE MIR -12 196 82 210 326 31 23 chrX 39526751 39526880 -137447260 + L2 LINE L2 2925 3054 -218 856 161 0 0 chrX 39527088 39527212 -137446928 - FLAM_C SINE Alu -19 124 1 232 295 16 23 chrX 39527287 39527416 -137446724 + (TGAG)n Simple_repeat Simple_repeat 1 128 0 435 302 54 7 chrX 39527588 39527737 -137446403 - MIR SINE MIR -76 186 31 367 248 119 18 chrX 39528180 39528289 -137445851 - MIR3 SINE MIR -2 206 87 234 156 0 0 chrX 39529166 39529211 -137444929 + CT-rich Low_complexity Low_complexity 1 45 0 646 230 126 29 chrX 39529520 39529694 -137444446 - MIR SINE MIR -43 219 29 505 268 112 27 chrX 39529833 39530057 -137444083 + MIR SINE MIR 20 262 0 240 210 0 32 chrX 39530384 39530446 -137443694 + GA-rich Low_complexity Low_complexity 3 62 0 205 301 97 21 chrX 39530581 39530674 -137443466 + MIR SINE MIR 92 191 -71 606 308 58 14 chrX 39530928 39531136 -137443004 + MIR SINE MIR 20 236 -26 270 348 10 60 chrX 39531173 39531374 -137442766 + L2 LINE L2 2857 3047 -225 1110 314 157 19 chrX 39531550 39532440 -137441700 + L2 LINE L2 1532 2544 -770 1552 223 109 13 chrX 39532453 39532901 -137441239 + L2 LINE L2 2823 3313 0 183 42 0 0 chrX 39533190 39533214 -137440926 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 340 337 89 20 chrX 39534178 39534424 -137439716 + L2 LINE L2 2920 3182 -90 593 299 19 24 chrX 39534483 39534694 -137439446 - MIR SINE MIR 0 262 53 180 283 0 0 chrX 39535045 39535091 -137439049 - L2 LINE L2 -74 3198 3153 * 653 242 71 0 chrX 39535083 39535265 -137438875 - MIR SINE MIR -34 228 34 457 304 76 61 chrX 39535359 39535622 -137438518 + L2 LINE L2 3004 3270 -2 889 276 75 6 chrX 39535807 39536126 -137438014 - L1MC4a LINE L1 -1868 5940 5600 1609 304 82 61 chrX 39536434 39536596 -137437544 - L1MC4a LINE L1 -503 5618 5461 2703 58 0 0 chrX 39536596 39536907 -137437233 - AluY SINE Alu 0 311 1 1609 304 82 61 chrX 39536907 39537307 -137436833 - L1MC4a LINE L1 -660 5461 5071 1688 125 46 59 chrX 39537307 39537610 -137436530 - AluSx SINE Alu -13 299 1 1609 304 82 61 chrX 39537610 39537872 -137436268 - L1MC4a LINE L1 -1050 5071 4816 1969 62 138 33 chrX 39537872 39538147 -137435993 - AluY SINE Alu -7 304 1 1609 304 82 61 chrX 39538147 39538884 -137435256 - L1MC4a LINE L1 -1305 4816 4095 233 132 0 0 chrX 39538884 39538922 -137435218 - MLT1F1 LTR MaLR -4 563 526 1609 304 82 61 chrX 39538922 39539360 -137434780 - L1MC4a LINE L1 -2026 4095 3667 2301 82 0 30 chrX 39539360 39539665 -137434475 - AluSg SINE Alu -14 296 1 1609 304 82 61 chrX 39539665 39539817 -137434323 - L1MC4a LINE L1 -2454 3667 3520 2412 100 0 0 chrX 39539817 39540117 -137434023 - AluSx SINE Alu -12 300 1 1609 304 82 61 chrX 39540117 39540145 -137433995 - L1MC4a LINE L1 -2601 3520 3494 2704 58 0 0 chrX 39540145 39540456 -137433684 - AluY SINE Alu 0 311 1 1609 304 82 61 chrX 39540456 39540923 -137433217 - L1MC4a LINE L1 -2627 3494 2877 2409 85 0 16 chrX 39541042 39541348 -137432792 + AluSg SINE Alu 1 301 -9 274 276 41 10 chrX 39541367 39541465 -137432675 + L2 LINE L2 2941 3041 -231 622 233 3 13 chrX 39541808 39542119 -137432021 + GA-rich Low_complexity Low_complexity 1 308 0 298 217 17 0 chrX 39542492 39542612 -137431528 + GA-rich Low_complexity Low_complexity 2 123 0 254 352 97 45 chrX 39543945 39544121 -137430019 - MIR SINE MIR -77 185 1 330 276 124 0 chrX 39544407 39544512 -137429628 - MIR SINE MIR -62 146 29 2010 127 3 59 chrX 39545061 39545383 -137428757 + AluSx SINE Alu 1 304 -8 189 162 0 0 chrX 39545409 39545446 -137428694 + MIR SINE MIR 81 117 -91 300 308 168 7 chrX 39545453 39545596 -137428544 + MIR SINE MIR 20 185 -77 468 211 26 18 chrX 39545885 39545999 -137428141 - L2 LINE L2 -19 3294 3180 371 284 125 0 chrX 39546048 39546224 -137427916 - L2 LINE L2 -338 2976 2779 367 318 63 55 chrX 39546659 39546914 -137427226 + L2 LINE L2 2985 3241 -31 679 297 75 43 chrX 39547181 39547555 -137426585 + L2 LINE L2 2887 3272 0 324 345 115 7 chrX 39547576 39547715 -137426425 + MIR SINE MIR 88 241 -21 2480 81 0 3 chrX 39548806 39549116 -137425024 + AluSc SINE Alu 1 309 0 209 282 71 12 chrX 39550361 39550446 -137423694 - MIR3 SINE MIR -10 198 109 352 298 30 15 chrX 39550834 39550965 -137423175 - MIR SINE MIR -60 202 70 224 238 32 32 chrX 39550965 39551028 -137423112 + MIR SINE MIR 65 127 -81 237 213 49 16 chrX 39551331 39551392 -137422748 - MIR SINE MIR -68 140 78 340 301 64 6 chrX 39551995 39552151 -137421989 + MIR SINE MIR 96 260 -2 376 231 5 156 chrX 39552231 39552417 -137421723 + MIR SINE MIR 34 191 -71 431 330 76 16 chrX 39552977 39553162 -137420978 + MER91A DNA MER1_type 1 196 0 261 0 0 0 chrX 39553481 39553510 -137420630 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 577 244 14 34 chrX 39554187 39554396 -137419744 - L2 LINE L2 -338 2976 2772 454 227 66 58 chrX 39554402 39554588 -137419552 + MIR3 SINE MIR 3 185 -62 262 306 14 0 chrX 39554635 39554707 -137419433 - MIR3 SINE MIR -28 180 108 183 239 0 0 chrX 39554919 39554965 -137419175 + (TG)n Simple_repeat Simple_repeat 2 47 0 264 306 93 72 chrX 39555352 39555545 -137418595 + MIR SINE MIR 59 255 -7 200 167 95 0 chrX 39555964 39556006 -137418134 - L2 LINE L2 -12 3260 3215 * 518 263 190 5 chrX 39555973 39556178 -137417962 - MIR SINE MIR -19 243 1 421 324 45 11 chrX 39556631 39556807 -137417333 + MIR3 SINE MIR 20 201 -7 2256 106 0 0 chrX 39556947 39557269 -137416871 - AluSx SINE Alu 0 322 1 2622 68 0 0 chrX 39557469 39557779 -137416361 + AluY SINE Alu 1 310 -1 2468 71 7 0 chrX 39558184 39558479 -137415661 - AluSx SINE Alu -15 297 1 2276 117 0 3 chrX 39558706 39559006 -137415134 - AluSx SINE Alu -13 299 1 227 193 0 35 chrX 39559082 39559139 -137415001 - HAL1 LINE L1 -299 2208 2154 1439 155 0 5 chrX 39559150 39559363 -137414777 - AluSg/x SINE Alu -17 295 84 3750 254 62 78 chrX 39559364 39559481 -137414659 - HAL1 LINE L1 -358 2149 2032 2066 145 17 0 chrX 39559481 39559771 -137414369 - AluJb SINE Alu -17 295 1 3750 254 62 78 chrX 39559771 39559992 -137414148 - HAL1 LINE L1 -475 2032 1809 2328 107 0 0 chrX 39559992 39560292 -137413848 + AluSx SINE Alu 1 300 -12 3750 254 62 78 chrX 39560292 39561222 -137412918 - HAL1 LINE L1 -698 1809 865 872 142 0 8 chrX 39561222 39561356 -137412784 - FLAM_C SINE Alu 0 133 1 3750 254 62 78 chrX 39561356 39561902 -137412238 - HAL1 LINE L1 -1642 865 365 1546 174 60 25 chrX 39561902 39562065 -137412075 - AluJo SINE Alu -19 293 114 216 0 0 0 chrX 39562065 39562089 -137412051 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1546 174 60 25 chrX 39562089 39562206 -137411934 - AluJo SINE Alu -198 114 3 3750 254 62 78 chrX 39562206 39562331 -137411809 - HAL1 LINE L1 -2142 365 239 245 349 47 0 chrX 39562346 39562452 -137411688 - HAL1 LINE L1 -2394 113 3 547 266 44 92 chrX 39562452 39562768 -137411372 + L2 LINE L2 2972 3272 0 298 263 90 21 chrX 39562989 39563240 -137410900 + L1ME4a LINE L1 5795 6099 -22 416 333 58 10 chrX 39563562 39563805 -137410335 + MER115 DNA AcHobo 87 376 -317 338 264 120 16 chrX 39563960 39564085 -137410055 + MIR SINE MIR 48 185 -77 527 256 106 6 chrX 39564093 39564253 -137409887 + MIR SINE MIR 11 186 -76 524 209 37 96 chrX 39564371 39564558 -137409582 + L2 LINE L2 3103 3278 -35 974 138 0 88 chrX 39564574 39564755 -137409385 + FRAM SINE Alu 1 157 -19 1416 183 133 0 chrX 39564801 39565064 -137409076 + AluJb SINE Alu 1 298 -14 1662 203 7 0 chrX 39565070 39565361 -137408779 + AluJo SINE Alu 5 297 -15 2230 115 3 0 chrX 39565664 39565959 -137408181 + AluSq SINE Alu 1 296 -17 2411 70 0 23 chrX 39565994 39566294 -137407846 + AluSg1 SINE Alu 1 293 -16 626 244 14 34 chrX 39767152 39767361 -137206779 - L2 LINE L2 -338 2976 2772 489 227 66 58 chrX 39767367 39767553 -137206587 + MIR3 SINE MIR 3 185 -62 275 306 14 0 chrX 39767600 39767672 -137206468 - MIR3 SINE MIR -28 180 108 183 239 0 0 chrX 39767884 39767930 -137206210 + (TG)n Simple_repeat Simple_repeat 2 47 0 287 306 93 72 chrX 39768317 39768510 -137205630 + MIR SINE MIR 59 255 -7 561 263 190 5 chrX 39768938 39769143 -137204997 - MIR SINE MIR -19 243 1 453 324 45 11 chrX 39769596 39769772 -137204368 + MIR3 SINE MIR 20 201 -7 2243 106 0 0 chrX 39769912 39770234 -137203906 - AluSx SINE Alu 0 322 1 2573 74 0 0 chrX 39770434 39770744 -137203396 + AluY SINE Alu 1 310 -1 2453 71 7 0 chrX 39771150 39771445 -137202695 - AluSx SINE Alu -15 297 1 2264 117 0 3 chrX 39771672 39771972 -137202168 - AluSx SINE Alu -13 299 1 1438 155 0 5 chrX 39772116 39772329 -137201811 - AluSg/x SINE Alu -17 295 84 3519 253 62 78 chrX 39772330 39772447 -137201693 - HAL1 LINE L1 -358 2149 2032 2058 145 17 0 chrX 39772447 39772737 -137201403 - AluJb SINE Alu -17 295 1 3519 253 62 78 chrX 39772737 39772958 -137201182 - HAL1 LINE L1 -475 2032 1809 2318 107 0 0 chrX 39772958 39773258 -137200882 + AluSx SINE Alu 1 300 -12 3519 253 62 78 chrX 39773258 39774188 -137199952 - HAL1 LINE L1 -698 1809 865 930 142 0 8 chrX 39774188 39774322 -137199818 - FLAM_C SINE Alu 0 133 1 3519 253 62 78 chrX 39774322 39774868 -137199272 - HAL1 LINE L1 -1642 865 365 1531 174 60 25 chrX 39774868 39775031 -137199109 - AluJo SINE Alu -19 293 114 216 0 0 0 chrX 39775031 39775055 -137199085 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1531 174 60 25 chrX 39775055 39775172 -137198968 - AluJo SINE Alu -198 114 3 3519 253 62 78 chrX 39775172 39775297 -137198843 - HAL1 LINE L1 -2142 365 239 233 349 47 0 chrX 39775312 39775418 -137198722 - HAL1 LINE L1 -2394 113 3 622 266 44 92 chrX 39775418 39775734 -137198406 + L2 LINE L2 2972 3272 0 292 266 90 21 chrX 39775955 39776206 -137197934 + L1ME4a LINE L1 5795 6099 -22 363 369 30 12 chrX 39776528 39776696 -137197444 + MER115 DNA AcHobo 87 257 -436 367 264 120 16 chrX 39776926 39777051 -137197089 + MIR SINE MIR 48 185 -77 562 239 85 65 chrX 39777059 39777260 -137196880 + MIR SINE MIR 11 215 -47 558 203 37 96 chrX 39777337 39777524 -137196616 + L2 LINE L2 3103 3278 -35 960 139 0 89 chrX 39777540 39777720 -137196420 + FRAM SINE Alu 1 156 -20 1408 183 133 0 chrX 39777766 39778029 -137196111 + AluJb SINE Alu 1 298 -14 1648 203 7 0 chrX 39778035 39778326 -137195814 + AluJo SINE Alu 5 297 -15 2219 115 3 0 chrX 39778629 39778924 -137195216 + AluSq SINE Alu 1 296 -17 2401 70 0 23 chrX 39778959 39779259 -137194881 + AluSg1 SINE Alu 1 293 -16 192 158 0 0 chrX 39779601 39779639 -137194501 + (ATG)n Simple_repeat Simple_repeat 3 40 0 2366 120 0 0 chrX 39780021 39780329 -137193811 - AluSx SINE Alu -4 308 1 2060 130 14 3 chrX 39780329 39780621 -137193519 - AluJo SINE Alu -17 295 1 604 325 54 6 chrX 39780680 39780846 -137193294 - MIR SINE MIR -77 185 12 265 257 76 0 chrX 39781399 39781504 -137192636 - MIR SINE MIR -60 148 36 1076 81 0 54 chrX 39782368 39782551 -137191589 - FLAM_C SINE Alu 0 175 1 316 299 0 35 chrX 39782587 39782731 -137191409 + HAL1 LINE L1 1164 1302 -1205 1987 124 64 0 chrX 39782732 39783014 -137191126 + AluSx SINE Alu 1 300 -12 2074 109 81 0 chrX 39783014 39783299 -137190841 + AluSx SINE Alu 1 308 -4 273 206 16 127 chrX 39783363 39783489 -137190651 + L1ME3A LINE L1 6054 6165 -5 312 239 9 55 chrX 39783498 39783607 -137190533 + HAL1 LINE L1 2050 2153 -354 331 244 46 71 chrX 39783660 39783857 -137190283 + HAL1b LINE L1 746 937 -411 1929 166 0 19 chrX 39783924 39784232 -137189908 + AluJo SINE Alu 1 302 -10 526 216 98 52 chrX 39784232 39784511 -137189629 + HAL1 LINE L1 2203 2497 -10 1886 161 19 19 chrX 39785217 39785528 -137188612 + AluJo SINE Alu 2 312 0 392 306 67 15 chrX 39785546 39785680 -137188460 - MIR SINE MIR -101 161 21 2570 71 3 6 chrX 39785950 39786281 -137187859 + AluSx SINE Alu 3 332 0 440 275 22 14 chrX 39786332 39786470 -137187670 + MIR3 SINE MIR 66 204 -4 238 323 165 8 chrX 39786573 39786700 -137187440 + L2 LINE L2 2562 2708 -606 2286 121 0 9 chrX 39786762 39787077 -137187063 + AluSx SINE Alu 1 312 0 581 226 43 154 chrX 39787254 39787604 -137186536 + L2 LINE L2 2925 3235 -37 269 305 126 11 chrX 39787717 39787812 -137186328 - MIR SINE MIR 0 262 157 285 221 22 0 chrX 39788417 39788494 -137185646 - MIR SINE MIR -76 132 82 220 313 15 0 chrX 39788970 39789037 -137185103 + MIR3 SINE MIR 141 208 0 757 210 0 7 chrX 39789124 39789262 -137184878 - FRAM SINE Alu -16 160 24 207 250 125 0 chrX 39789372 39789428 -137184712 - L2 LINE L2 0 3313 3251 261 257 27 14 chrX 39789447 39789521 -137184619 + L2 LINE L2 3198 3272 0 366 268 157 33 chrX 39790127 39790237 -137183903 + MIR SINE MIR 25 161 -101 2224 108 20 0 chrX 39790237 39790532 -137183608 + AluSq SINE Alu 1 301 -12 366 268 157 33 chrX 39790532 39790574 -137183566 + MIR SINE MIR 161 196 -66 1173 203 0 64 chrX 39790590 39790856 -137183284 + MIR SINE MIR 14 262 0 898 182 122 66 chrX 39791681 39791967 -137182173 + AluJo SINE Alu 1 302 0 282 284 95 35 chrX 39792595 39792711 -137181429 + MIR SINE MIR 66 188 -74 550 251 20 29 chrX 39793201 39793380 -137180760 + MIR SINE MIR 20 198 -64 408 304 92 56 chrX 39793621 39793980 -137180160 - L3 LINE CR1 -3 1574 1203 629 256 16 31 chrX 39794439 39794630 -137179510 - MIR3 SINE MIR -1 207 20 23 54 0 0 chrX 39795705 39795742 -137178398 + GC_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chrX 39796217 39796247 -137177893 + GC_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chrX 39796531 39796572 -137177568 + GC_rich Low_complexity Low_complexity 1 41 0 242 330 9 0 chrX 39796955 39797061 -137177079 + C-rich Low_complexity Low_complexity 6 112 0 225 299 0 0 chrX 39797117 39797261 -137176879 + C-rich Low_complexity Low_complexity 1 144 0 328 369 0 0 chrX 39797576 39797736 -137176404 + C-rich Low_complexity Low_complexity 1 160 0 405 182 0 61 chrX 39797841 39797940 -137176200 + L1MC2 LINE L1 4235 4327 -1819 914 98 16 0 chrX 39797941 39798063 -137176077 - FLAM_C SINE Alu -2 141 18 3105 214 17 12 chrX 39798070 39798384 -137175756 + L1MC2 LINE L1 4321 4632 -1514 2383 102 0 0 chrX 39798384 39798687 -137175453 - AluSg SINE Alu -7 303 1 3105 214 17 12 chrX 39798687 39799135 -137175005 + L1MC2 LINE L1 4632 5087 -1059 1342 175 5 5 chrX 39799136 39799359 -137174781 - AluSg/x SINE Alu -5 307 85 925 200 9 5 chrX 39799359 39799574 -137174566 + L1MC2 LINE L1 5082 5297 -849 802 193 0 0 chrX 39799576 39799711 -137174429 + FLAM_C SINE Alu 3 137 -6 2302 96 0 3 chrX 39799711 39800002 -137174138 - AluSg SINE Alu -20 290 1 4014 139 57 27 chrX 39800015 39800747 -137173393 + L1MC2 LINE L1 5269 6002 -164 1823 97 120 4 chrX 39800747 39801005 -137173135 - AluSg1 SINE Alu -15 294 7 4014 139 57 27 chrX 39801005 39801174 -137172966 + L1MC2 LINE L1 6002 6165 -1 243 253 13 0 chrX 39801182 39801257 -137172883 + L1MC4 LINE L1 7416 7491 -551 897 122 0 43 chrX 39801267 39801406 -137172734 - FLAM_C SINE Alu 0 133 1 465 303 73 44 chrX 39801407 39801589 -137172551 + L1MC4 LINE L1 7311 7486 -556 2507 69 3 3 chrX 39801589 39801893 -137172247 + AluSp SINE Alu 1 304 -9 465 303 73 44 chrX 39801893 39802194 -137171946 + L1MC4 LINE L1 7486 7916 -126 1715 148 112 7 chrX 39802476 39802753 -137171387 - AluSg SINE Alu -2 308 3 1778 169 7 0 chrX 39802763 39803053 -137171087 - AluJo SINE Alu -20 292 1 24 96 0 0 chrX 39803372 39803445 -137170695 + AT_rich Low_complexity Low_complexity 1 73 0 3149 93 7 2 chrX 39803532 39803963 -137170177 - L1PA8A LINE L1 -2 6129 5697 3245 80 14 0 chrX 39803963 39804701 -137169439 + L1PA8A LINE L1 4960 5704 -427 332 294 196 0 chrX 39804903 39805066 -137169074 + MIR SINE MIR 33 227 -35 24 0 0 0 chrX 39805268 39805292 -137168848 + AT_rich Low_complexity Low_complexity 1 24 0 267 167 0 83 chrX 39806679 39806775 -137167365 + C-rich Low_complexity Low_complexity 6 93 0 247 258 39 90 chrX 39807446 39807586 -137166554 + L2 LINE L2 2945 3078 -194 189 0 0 0 chrX 39807586 39807607 -137166533 + (TC)n Simple_repeat Simple_repeat 1 21 0 247 258 39 90 chrX 39807607 39807621 -137166519 + L2 LINE L2 3078 3091 -181 1116 141 41 0 chrX 39807910 39808169 -137165971 + L1MB7 LINE L1 5196 5463 -711 462 18 0 0 chrX 39809153 39809208 -137164932 + (CA)n Simple_repeat Simple_repeat 2 56 0 4318 131 9 48 chrX 39809208 39809833 -137164307 + L1MB7 LINE L1 5439 6030 -154 891 72 0 0 chrX 39809833 39809944 -137164196 + HY1 scRNA scRNA 1 111 -1 4318 131 9 48 chrX 39809944 39810094 -137164046 + L1MB7 LINE L1 6030 6184 0 1049 173 11 6 chrX 39810135 39810314 -137163826 - MIR SINE MIR -2 260 81 201 194 0 0 chrX 39810371 39810407 -137163733 + MIR SINE MIR 217 252 -10 475 266 65 35 chrX 39810557 39810726 -137163414 - L2 LINE L2 -4 3309 3136 1641 222 57 16 chrX 39810730 39811172 -137162968 + MLT1C LTR MaLR 8 467 0 198 301 44 53 chrX 39811211 39811324 -137162816 - L2 LINE L2 -56 3257 3146 237 324 27 0 chrX 39811638 39811712 -137162428 - L2 LINE L2 -523 2791 2716 2003 119 49 0 chrX 39812161 39812447 -137161693 + AluSx SINE Alu 1 300 -12 311 148 182 34 chrX 39812475 39812563 -137161577 - MIR3 SINE MIR -15 193 93 1017 272 118 37 chrX 39813234 39813590 -137160550 + L3 LINE CR1 1148 1538 -39 2008 152 10 7 chrX 39813590 39813892 -137160248 + AluJb SINE Alu 1 303 -9 1017 272 118 37 chrX 39813892 39813917 -137160223 + L3 LINE CR1 1538 1560 -17 508 232 0 0 chrX 39814211 39814310 -137159830 - MIR3 SINE MIR -15 193 95 279 306 16 58 chrX 39814331 39814452 -137159688 + L3 LINE CR1 1423 1538 -39 1314 174 15 0 chrX 39814453 39814654 -137159486 + AluJo SINE Alu 1 204 -108 329 234 140 19 chrX 39814833 39814940 -137159200 - L2 LINE L2 0 3313 3194 * 649 257 64 98 chrX 39814937 39815326 -137158814 + L2 LINE L2 2897 3272 0 2324 96 7 0 chrX 39815408 39815710 -137158430 - AluSp SINE Alu -9 304 1 2473 69 7 3 chrX 39816084 39816387 -137157753 + AluSx SINE Alu 1 304 -8 351 150 0 0 chrX 39816485 39816545 -137157595 + (TAA)n Simple_repeat Simple_repeat 1 60 0 351 230 81 11 chrX 39816567 39816654 -137157486 - MER81 DNA DNA -2 112 20 391 269 72 109 chrX 39816746 39816939 -137157201 - MIR3 SINE MIR -22 186 1 189 160 368 56 chrX 39818091 39818113 -137156027 + L3 LINE CR1 1078 1092 -485 186 43 0 0 chrX 39818113 39818136 -137156004 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 189 160 368 56 chrX 39818136 39818238 -137155902 + L3 LINE CR1 1092 1241 -336 * 239 313 131 0 chrX 39818222 39818321 -137155819 - MIR3 SINE MIR 0 208 97 320 322 0 0 chrX 39818321 39818411 -137155729 + L3 LINE CR1 1265 1354 -223 1908 114 4 0 chrX 39818411 39818704 -137155436 - AluSq SINE Alu 0 304 11 753 282 34 56 chrX 39818721 39818970 -137155170 - L1M4 LINE L1 -1940 4206 3966 1813 137 34 3 chrX 39818970 39819263 -137154877 - AluJb SINE Alu -10 302 1 753 282 34 56 chrX 39819263 39819368 -137154772 - L1M4 LINE L1 -2180 3966 3860 342 307 8 39 chrX 39819368 39819495 -137154645 + L3 LINE CR1 1344 1466 -111 1109 275 87 53 chrX 39819515 39820247 -137153893 - L2 LINE L2 -35 3278 2530 1498 179 5 73 chrX 39820251 39820403 -137153737 + L1M4 LINE L1 2612 2773 -3373 1652 168 3 32 chrX 39820403 39820718 -137153422 + AluJo SINE Alu 1 306 -6 1498 179 5 73 chrX 39820718 39820791 -137153349 + L1M4 LINE L1 2773 2849 -3297 2092 117 3 7 chrX 39820791 39821100 -137153040 + AluSx SINE Alu 3 310 -2 1498 179 5 73 chrX 39821100 39821269 -137152871 + L1M4 LINE L1 2849 2980 -3166 1226 210 61 66 chrX 39821267 39821431 -137152709 + L1M4 LINE L1 4233 4396 -1750 * 738 181 8 8 chrX 39821431 39821564 -137152576 - FLAM_C SINE Alu 0 133 1 2248 97 0 3 chrX 39821564 39821864 -137152276 - AluSx SINE Alu -13 299 1 1226 210 61 66 chrX 39821864 39822194 -137151946 + L1M4 LINE L1 4394 4774 -1372 1465 194 57 57 chrX 39822200 39822551 -137151589 - MER21B LTR ERV1 0 863 513 2210 96 0 7 chrX 39822643 39822973 -137151167 - AluSc SINE Alu 0 329 2 2703 183 45 11 chrX 39823310 39823780 -137150360 - MER21B LTR ERV1 -376 487 2 273 169 99 0 chrX 39823827 39823898 -137150242 - L2 LINE L2 -774 2540 2463 228 368 0 0 chrX 39824265 39824341 -137149799 + GA-rich Low_complexity Low_complexity 2 77 0 1372 313 35 16 chrX 39824754 39825121 -137149019 - L2 LINE L2 -778 2536 2153 3207 138 16 30 chrX 39825121 39825339 -137148801 + MER89 LTR ERV1 1 221 -338 2271 96 0 0 chrX 39825339 39825640 -137148500 + AluSx SINE Alu 1 301 -11 3207 138 16 30 chrX 39825640 39825988 -137148152 + MER89 LTR ERV1 221 559 0 1372 313 35 16 chrX 39825988 39826185 -137147955 - L2 LINE L2 -1161 2153 1961 689 112 207 9 chrX 39826886 39827002 -137147138 + AluJ SINE Alu 5 143 -169 456 289 103 40 chrX 39827041 39827497 -137146643 - L1 LINE L1 -1164 4982 4498 856 226 0 0 chrX 39827514 39827673 -137146467 + AluJ SINE Alu 137 295 -7 2141 101 3 0 chrX 39827676 39827973 -137146167 + AluSx SINE Alu 1 298 -14 2388 74 0 0 chrX 39828044 39828342 -137145798 - AluSg SINE Alu -12 298 1 1685 164 35 0 chrX 39828468 39828588 -137145552 + AluJo SINE Alu 1 115 -197 216 0 0 0 chrX 39828588 39828612 -137145528 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1685 164 35 0 chrX 39828612 39828778 -137145362 + AluJo SINE Alu 115 297 -15 1768 173 92 43 chrX 39828819 39828883 -137145257 - MLT1E LTR MaLR 0 593 534 2110 106 10 13 chrX 39828883 39829194 -137144946 + AluSq SINE Alu 1 310 -3 1768 173 92 43 chrX 39829194 39829499 -137144641 - MLT1E LTR MaLR -59 534 206 1644 136 0 121 chrX 39829539 39829893 -137144247 - AluJo SINE Alu 0 302 1 2364 47 3 7 chrX 39829904 39830203 -137143937 - AluY SINE Alu -9 302 5 469 184 29 10 chrX 39830211 39830314 -137143826 + MLT1E LTR MaLR 56 160 -433 436 148 14 169 chrX 39830322 39830391 -137143749 - MLT1E LTR MaLR -473 120 81 2236 82 0 0 chrX 39830391 39830709 -137143431 + AluSq SINE Alu 1 318 0 436 148 14 169 chrX 39830709 39830780 -137143360 - MLT1E LTR MaLR -512 81 1 2324 88 3 0 chrX 39830937 39831244 -137142896 - AluSx SINE Alu -2 310 3 1582 132 12 96 chrX 39831333 39831667 -137142473 + AluJo SINE Alu 1 306 -6 409 292 187 0 chrX 39831732 39831872 -137142268 - MIR SINE MIR -72 136 28 2281 77 0 13 chrX 39831958 39832309 -137141831 - AluSg SINE Alu 0 310 1 399 277 30 10 chrX 39832361 39832462 -137141678 + MIR SINE MIR 156 258 -4 5131 181 48 80 chrX 39832722 39834046 -137140094 + L1MC4 LINE L1 6762 8042 0 1703 120 101 0 chrX 39834091 39834367 -137139773 + AluSx SINE Alu 1 304 -8 1591 162 37 0 chrX 39834367 39834636 -137139504 + AluJb SINE Alu 27 307 -5 2286 96 3 3 chrX 39834636 39834948 -137139192 + AluSq SINE Alu 1 313 0 3213 221 19 60 chrX 39834956 39835265 -137138875 + L1MC2 LINE L1 4015 4335 -1811 838 107 16 0 chrX 39835265 39835387 -137138753 - FLAM_C SINE Alu -2 141 18 3213 221 19 60 chrX 39835387 39835713 -137138427 + L1MC2 LINE L1 4335 4673 -1473 2238 97 0 0 chrX 39835713 39836011 -137138129 - AluSg SINE Alu -12 298 1 3213 221 19 60 chrX 39836011 39836459 -137137681 + L1MC2 LINE L1 4673 5087 -1059 1227 175 5 5 chrX 39836460 39836683 -137137457 - AluSg/x SINE Alu -5 307 85 967 200 9 5 chrX 39836683 39836898 -137137242 + L1MC2 LINE L1 5082 5297 -849 785 181 0 8 chrX 39836900 39837033 -137137107 + AluJo SINE Alu 3 134 -178 2158 96 0 3 chrX 39837035 39837326 -137136814 - AluSg SINE Alu -20 290 1 5837 122 58 36 chrX 39837339 39838071 -137136069 + L1MC2 LINE L1 5269 5983 -361 1759 98 117 4 chrX 39838071 39838336 -137135804 - AluSg1 SINE Alu -14 295 1 5837 122 58 36 chrX 39838336 39838491 -137135649 + L1MC2 LINE L1 5983 6133 -211 2151 96 0 0 chrX 39838491 39838823 -137135317 + AluSg SINE Alu 1 332 0 5837 122 58 36 chrX 39838823 39838971 -137135169 + L1MC2 LINE L1 6133 6329 -15 1654 161 68 0 chrX 39838972 39839264 -137134876 + AluJb SINE Alu 1 312 0 1131 172 22 22 chrX 39839285 39839517 -137134623 + L1MB7 LINE L1 5813 6044 -140 2105 134 50 22 chrX 39839517 39839875 -137134265 + THE1C LTR MaLR 1 368 -7 815 108 0 8 chrX 39839886 39840016 -137134124 + L1MB8 LINE L1 6049 6177 -1 271 224 207 0 chrX 39840427 39840543 -137133597 + L1ME4a LINE L1 5781 5920 -201 233 211 105 0 chrX 39840561 39840618 -137133522 + L1ME4a LINE L1 5963 6025 -96 1660 172 0 10 chrX 39840855 39841146 -137132994 - AluJb SINE Alu -24 288 1 189 0 0 0 chrX 39841146 39841167 -137132973 + (T)n Simple_repeat Simple_repeat 1 21 0 457 200 10 40 chrX 39841412 39841512 -137132628 + MIR SINE MIR 75 171 -91 430 297 131 57 chrX 39841758 39842508 -137131632 - L2 LINE L2 -4 3268 2459 282 238 60 24 chrX 39842675 39842759 -137131381 + MIR3 SINE MIR 77 163 -45 248 260 23 141 chrX 39843143 39843320 -137130820 + MIR3 SINE MIR 49 204 -4 372 306 18 0 chrX 39843344 39843455 -137130685 + MIR3 SINE MIR 62 174 -34 1230 87 6 0 chrX 39843880 39844052 -137130088 + AluSg/x SINE Alu 127 299 -11 351 280 40 124 chrX 39844066 39844265 -137129875 - MIR SINE MIR -14 248 73 2421 62 0 10 chrX 39844265 39844571 -137129569 + AluSq SINE Alu 1 303 -10 351 280 40 124 chrX 39844571 39844621 -137129519 - MIR SINE MIR -189 73 20 439 286 135 70 chrX 39844701 39845057 -137129083 + HAL1 LINE L1 2 380 -2127 835 139 0 29 chrX 39845311 39845448 -137128692 - AluJb SINE Alu -179 133 1 2144 98 0 7 chrX 39845485 39845781 -137128359 + AluSx SINE Alu 1 294 -18 2435 40 0 7 chrX 39845783 39846084 -137128056 + AluY SINE Alu 1 299 -12 438 238 164 71 chrX 39846092 39846436 -137127704 + HAL1 LINE L1 1935 2318 -189 2108 120 0 0 chrX 39846436 39846737 -137127403 + AluSx SINE Alu 1 301 -11 438 238 164 71 chrX 39846737 39846770 -137127370 + HAL1 LINE L1 2318 2347 -160 771 281 70 65 chrX 39846787 39847190 -137126950 - MLT1L LTR MaLR -17 598 89 352 274 33 46 chrX 39847198 39847351 -137126789 + HAL1 LINE L1 2357 2507 0 2133 120 0 0 chrX 39847355 39847655 -137126485 + AluSx SINE Alu 1 300 -12 23 0 0 0 chrX 39847655 39847678 -137126462 + AT_rich Low_complexity Low_complexity 1 23 0 412 299 65 19 chrX 39847896 39848050 -137126090 + MIR SINE MIR 9 169 -93 201 250 42 0 chrX 39848034 39848082 -137126058 + L2 LINE L2 3263 3312 -1 * 1686 230 123 33 chrX 39848880 39849549 -137124591 + HAL1 LINE L1 993 1721 -786 2085 95 0 3 chrX 39849557 39849841 -137124299 + AluSc SINE Alu 1 283 -26 1750 118 0 4 chrX 39849841 39850085 -137124055 - AluSp SINE Alu -68 245 1 233 186 169 17 chrX 39850086 39850145 -137123995 - LTR67 LTR ERVL -58 499 432 987 290 68 54 chrX 39850442 39851266 -137122874 - L1ME3A LINE L1 -230 5940 5256 1089 279 97 36 chrX 39851609 39852085 -137122055 - MLT1K LTR MaLR -3 585 81 1136 205 184 21 chrX 39852112 39852493 -137121647 + HAL1 LINE L1 1710 2152 -355 234 157 59 0 chrX 39852544 39852595 -137121545 + HAL1b LINE L1 746 799 -549 461 186 0 143 chrX 39852728 39852799 -137121341 + HAL1 LINE L1 2265 2308 -199 2389 87 0 0 chrX 39852799 39853111 -137121029 + AluSx SINE Alu 1 312 0 461 186 0 143 chrX 39853111 39853179 -137120961 + HAL1 LINE L1 2308 2384 -123 1766 263 61 83 chrX 39853186 39854448 -137119692 + HAL1 LINE L1 1 1427 -1080 2300 68 0 7 chrX 39854470 39854801 -137119339 + AluSq SINE Alu 1 313 0 3301 204 73 10 chrX 39854810 39855863 -137118277 + L1MDa LINE L1 31 1558 -4982 1049 252 140 49 chrX 39855839 39856034 -137118106 + HAL1 LINE L1 1828 2004 -897 * 1628 79 0 0 chrX 39856034 39856248 -137117892 + AluY SINE Alu 82 295 -16 1049 252 140 49 chrX 39856248 39856702 -137117438 + HAL1 LINE L1 2004 2536 -365 372 285 112 42 chrX 39856735 39856949 -137117191 + HAL1b LINE L1 715 943 -405 364 248 106 93 chrX 39857003 39857249 -137116891 + HAL1 LINE L1 2245 2493 -14 285 313 85 59 chrX 39857377 39857649 -137116491 + L2 LINE L2 2841 3119 -153 2213 100 3 0 chrX 39857664 39857965 -137116175 - AluSx SINE Alu -9 303 2 333 109 0 0 chrX 39857988 39858043 -137116097 - AluSx SINE Alu -1 300 246 1544 94 0 19 chrX 39858043 39858119 -137116021 - AluSx SINE Alu -103 209 133 2185 100 0 0 chrX 39858119 39858419 -137115721 - AluSq SINE Alu -13 300 1 1544 94 0 19 chrX 39858419 39858555 -137115585 - AluSx SINE Alu -179 133 1 330 311 59 0 chrX 39858584 39858703 -137115437 + L2 LINE L2 2654 2779 -535 506 343 54 43 chrX 39858759 39859129 -137115011 + L2 LINE L2 2899 3272 0 221 296 12 0 chrX 39859134 39859215 -137114925 + (TGAA)n Simple_repeat Simple_repeat 3 84 0 188 196 0 20 chrX 39859241 39859292 -137114848 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 338 238 246 0 chrX 39860625 39860747 -137113393 + MIR3 SINE MIR 42 193 -15 466 265 38 8 chrX 39861288 39861420 -137112720 - L2 LINE L2 0 3272 3137 259 315 56 19 chrX 39861613 39861721 -137112419 + MER5B DNA MER1_type 4 115 -63 678 361 58 27 chrX 39861811 39862224 -137111916 + L2 LINE L2 2827 3252 -20 322 260 29 19 chrX 39862436 39862540 -137111600 + MIR SINE MIR 20 124 -84 208 254 60 15 chrX 39862671 39862738 -137111402 + MER5A DNA MER1_type 96 165 -24 281 191 0 0 chrX 39862843 39862890 -137111250 - MER5B DNA MER1_type -129 49 3 319 266 0 0 chrX 39862938 39863002 -137111138 + MIR3 SINE MIR 108 171 -37 513 233 204 0 chrX 39863015 39863191 -137110949 - MIR SINE MIR -29 233 22 564 272 76 34 chrX 39863432 39863860 -137110280 + L1MC4a LINE L1 5549 5993 -128 868 170 7 13 chrX 39864452 39864605 -137109535 - MIR SINE MIR -89 173 22 397 348 191 12 chrX 39864602 39864858 -137109282 + L2 LINE L2 2971 3272 0 * 269 196 0 0 chrX 39865029 39865080 -137109060 - MER4-int LTR ERV1 -5437 1161 1111 782 247 55 90 chrX 39866718 39867081 -137107059 + L2 LINE L2 2906 3253 -19 437 285 70 47 chrX 39868123 39868337 -137105803 + MIR SINE MIR 20 238 -24 329 267 144 34 chrX 39869066 39869212 -137104928 - L2 LINE L2 -5 3308 3147 2086 154 0 0 chrX 39869566 39869865 -137104275 - AluJb SINE Alu -13 299 1 1715 187 10 0 chrX 39869967 39870256 -137103884 + AluJo SINE Alu 1 292 -20 24 0 0 0 chrX 39870286 39870310 -137103830 + AT_rich Low_complexity Low_complexity 1 24 0 284 375 79 0 chrX 39870357 39870509 -137103631 - L2 LINE L2 -455 2859 2696 237 277 82 61 chrX 39870516 39870558 -137103582 + L1MC4a LINE L1 5825 5865 -1943 2522 50 0 25 chrX 39870558 39870876 -137103264 - AluY SINE Alu -1 310 1 237 277 82 61 chrX 39870876 39871064 -137103076 + L1MC4a LINE L1 5865 6060 -1748 600 268 55 57 chrX 39871129 39872057 -137102083 + L1MC4 LINE L1 7111 8041 -1 2370 80 0 0 chrX 39872309 39872596 -137101544 - AluY SINE Alu -24 287 1 2081 225 37 68 chrX 39872762 39873551 -137100589 + L1MC5 LINE L1 6563 7330 -631 643 163 8 0 chrX 39873552 39873675 -137100465 + Charlie5 DNA MER1_type 1 124 -2488 1865 166 23 8 chrX 39873676 39874018 -137100122 + Charlie5 DNA MER1_type 2234 2584 -40 2519 56 7 7 chrX 39874018 39874322 -137099818 + AluY SINE Alu 1 304 -7 1865 166 23 8 chrX 39874322 39874364 -137099776 + Charlie5 DNA MER1_type 2584 2624 0 248 170 0 0 chrX 39874365 39874412 -137099728 + L1MC5 LINE L1 7331 7377 -584 779 222 63 125 chrX 39874450 39874752 -137099388 + L1MC5 LINE L1 7373 7692 -269 2182 104 7 3 chrX 39874752 39875041 -137099099 + AluSg SINE Alu 2 291 -19 779 222 63 125 chrX 39875041 39875141 -137098999 + L1MC5 LINE L1 7692 7797 -164 2393 88 16 0 chrX 39875141 39875446 -137098694 - AluY SINE Alu -1 310 1 779 222 63 125 chrX 39875446 39875508 -137098632 + L1MC5 LINE L1 7797 7861 -100 2172 111 0 7 chrX 39875508 39875805 -137098335 + AluSg SINE Alu 1 295 -15 779 222 63 125 chrX 39875805 39875929 -137098211 + L1MC5 LINE L1 7861 7926 -35 248 203 17 0 chrX 39875952 39876011 -137098129 + L1MC4 LINE L1 6952 7011 -1031 2304 82 62 0 chrX 39876013 39876305 -137097835 + AluY SINE Alu 1 310 -1 2158 125 0 7 chrX 39876333 39876636 -137097504 + AluSx SINE Alu 1 301 -11 839 152 0 36 chrX 39876638 39876776 -137097364 + FLAM_C SINE Alu 1 133 0 1173 198 169 0 chrX 39876838 39877086 -137097054 - AluSg SINE Alu -10 290 1 23 0 0 0 chrX 39877089 39877112 -137097028 + AT_rich Low_complexity Low_complexity 1 23 0 983 142 9 75 chrX 39877127 39877339 -137096801 - MER20 DNA MER1_type -20 199 2 351 149 90 15 chrX 39877340 39877407 -137096733 - L1MC5 LINE L1 -243 7718 7647 2373 84 6 6 chrX 39877410 39877721 -137096419 + AluY SINE Alu 1 311 0 2330 97 10 0 chrX 39877760 39878049 -137096091 - AluSq SINE Alu -21 292 1 333 91 0 0 chrX 39878098 39878142 -137095998 - Alu SINE Alu -259 44 1 326 136 106 0 chrX 39878271 39878337 -137095803 - L1MC5 LINE L1 -620 7341 7269 1303 216 106 57 chrX 39878342 39879039 -137095101 + L1MC5 LINE L1 7262 7925 -36 318 298 93 58 chrX 39879081 39879176 -137094964 - L2 LINE L2 -676 2638 2548 2374 84 27 10 chrX 39879176 39879475 -137094665 + AluSq SINE Alu 1 304 -9 318 298 93 58 chrX 39879475 39879637 -137094503 - L2 LINE L2 -766 2548 2372 436 291 76 67 chrX 39880309 39880361 -137093779 + MIR SINE MIR 20 70 -192 2234 141 0 0 chrX 39880361 39880673 -137093467 + AluSx SINE Alu 1 312 0 436 291 76 67 chrX 39880673 39880830 -137093310 + MIR SINE MIR 70 231 -31 225 293 40 20 chrX 39882131 39882230 -137091910 - L1ME4a LINE L1 -52 6069 5969 1964 167 0 0 chrX 39882599 39882898 -137091242 + AluJb SINE Alu 1 299 -13 761 193 16 21 chrX 39882903 39883095 -137091045 + L1MC4 LINE L1 7852 8042 0 2120 107 17 7 chrX 39883204 39883504 -137090636 + AluSq SINE Alu 1 303 -10 268 284 128 49 chrX 39884037 39884241 -137089899 - L1ME4a LINE L1 -330 5791 5572 2423 87 0 0 chrX 39884260 39884558 -137089582 + AluSg SINE Alu 1 298 -12 231 299 71 14 chrX 39884605 39884816 -137089324 - L1ME4a LINE L1 -2331 5477 5255 238 150 0 0 chrX 39885053 39885093 -137089047 - L1ME4a LINE L1 -82 6039 6000 744 217 63 24 chrX 39885389 39885596 -137088544 - MIR SINE MIR -46 216 2 850 254 30 9 chrX 39885610 39885829 -137088311 + MIR SINE MIR 36 262 0 377 280 91 59 chrX 39886196 39886514 -137087626 + L2 LINE L2 2776 3093 -179 233 119 24 0 chrX 39887012 39887054 -137087086 + (TA)n Simple_repeat Simple_repeat 2 44 0 397 273 73 17 chrX 39887109 39887270 -137086870 - L1MC/D LINE L1 -739 5431 5264 186 342 144 0 chrX 39887392 39887503 -137086637 + L2 LINE L2 3180 3306 -7 369 182 0 165 chrX 39887558 39887679 -137086461 + L2 LINE L2 3172 3272 0 2312 86 13 29 chrX 39887886 39888199 -137085941 + AluSg SINE Alu 1 308 -2 1622 124 60 74 chrX 39888211 39888509 -137085631 + AluJb SINE Alu 13 306 -6 512 249 113 49 chrX 39888538 39888723 -137085417 - MIR SINE MIR -65 197 1 421 209 43 74 chrX 39889452 39889615 -137084525 - MER46C DNA MER2_type -1 337 180 402 187 72 191 chrX 39889755 39889812 -137084328 - MIR SINE MIR -45 217 155 1766 83 43 4 chrX 39889812 39890042 -137084098 - AluSx SINE Alu -18 294 56 402 187 72 191 chrX 39890042 39890193 -137083947 - MIR SINE MIR -107 155 34 2433 122 60 58 chrX 39891376 39891419 -137082721 + MER21B-int LTR ERV1 3662 3703 -488 774 221 0 0 chrX 39891419 39891550 -137082590 + FLAM_A SINE Alu 2 132 -1 2433 122 60 58 chrX 39891550 39891975 -137082165 + MER21B-int LTR ERV1 3703 4131 -60 2341 98 0 0 chrX 39892012 39892309 -137081831 - AluSx SINE Alu -14 298 2 4288 160 120 10 chrX 39892373 39893150 -137080990 + MER21B LTR ERV1 1 862 -1 205 245 61 0 chrX 39893290 39893339 -137080801 - MIR SINE MIR -36 226 175 2245 101 0 7 chrX 39893359 39893645 -137080495 + AluSx SINE Alu 1 284 -28 216 0 0 0 chrX 39893645 39893669 -137080471 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 192 40 0 0 chrX 39894147 39894172 -137079968 + (A)n Simple_repeat Simple_repeat 1 25 0 336 322 124 11 chrX 39894172 39894349 -137079791 + MIR SINE MIR 20 216 -46 248 110 44 80 chrX 39895097 39895147 -137078993 + MIR SINE MIR 104 150 -61 506 125 10 62 chrX 39895226 39895322 -137078818 - AluJo SINE Alu -177 135 45 741 247 100 68 chrX 39895442 39895524 -137078616 + MIR SINE MIR 3 81 -181 1526 189 3 36 chrX 39895524 39895658 -137078482 + AluJb SINE Alu 1 138 -164 1830 107 0 81 chrX 39895658 39895829 -137078311 + AluSx SINE Alu 39 177 -135 2393 99 0 3 chrX 39895829 39896142 -137077998 + AluSq SINE Alu 1 312 -1 1830 107 0 81 chrX 39896142 39896268 -137077872 + AluSx SINE Alu 177 312 0 1526 189 3 36 chrX 39896268 39896439 -137077701 + AluJb SINE Alu 138 296 -6 741 247 100 68 chrX 39896439 39896607 -137077533 + MIR SINE MIR 81 261 -1 2362 106 7 0 chrX 39896640 39896943 -137077197 + AluSg SINE Alu 1 305 -5 422 179 2 4 chrX 39896954 39897038 -137077102 - Tigger4(Zombi) DNA MER2_type 0 2731 2 229 200 0 36 chrX 39896991 39897046 -137077094 + MER46A DNA MER2_type 99 151 -85 * 291 271 0 25 chrX 39898234 39898352 -137075788 + CT-rich Low_complexity Low_complexity 5 119 0 2418 97 6 0 chrX 39899125 39899436 -137074704 + AluSq SINE Alu 1 313 0 998 189 5 21 chrX 39899653 39899843 -137074297 - MER5A DNA MER1_type 0 189 3 1921 114 77 0 chrX 39900741 39901014 -137073126 + AluSx SINE Alu 7 300 -12 1147 160 6 0 chrX 39901014 39901189 -137072951 + AluJo/FRAM SINE Alu 134 309 -3 2523 86 0 3 chrX 39901350 39901663 -137072477 + AluSx SINE Alu 1 312 0 23 54 0 0 chrX 39901663 39901700 -137072440 + AT_rich Low_complexity Low_complexity 1 37 0 1111 94 26 42 chrX 39901700 39901726 -137072414 + L1MB2 LINE L1 5984 6009 -162 2300 105 0 3 chrX 39901726 39902020 -137072120 - AluSc SINE Alu -16 293 1 1111 94 26 42 chrX 39902020 39902184 -137071956 + L1MB2 LINE L1 6009 6171 0 243 253 13 0 chrX 39902192 39902267 -137071873 + L1MC4 LINE L1 7416 7491 -551 897 122 0 43 chrX 39902277 39902416 -137071724 - FLAM_C SINE Alu 0 133 1 465 303 73 44 chrX 39902417 39902599 -137071541 + L1MC4 LINE L1 7311 7486 -556 2507 69 3 3 chrX 39902599 39902903 -137071237 + AluSp SINE Alu 1 304 -9 465 303 73 44 chrX 39902903 39903204 -137070936 + L1MC4 LINE L1 7486 7916 -126 1602 163 112 7 chrX 39903486 39903763 -137070377 - AluSg SINE Alu -2 308 3 1600 189 7 0 chrX 39903782 39904063 -137070077 - AluJo SINE Alu -29 283 1 2486 82 7 0 chrX 39904091 39904395 -137069745 + AluSx SINE Alu 1 306 -6 1856 185 0 0 chrX 39904575 39904872 -137069268 + AluJb SINE Alu 1 297 -15 2424 94 0 0 chrX 39904874 39905182 -137068958 + AluSg SINE Alu 1 308 -2 651 147 0 0 chrX 39905182 39905277 -137068863 + AluSg/x SINE Alu 193 287 -25 365 258 52 0 chrX 39905460 39905557 -137068583 + MIR SINE MIR 88 189 -73 2172 132 7 0 chrX 39905572 39905882 -137068258 + AluSx SINE Alu 1 312 0 973 197 6 0 chrX 39906566 39906744 -137067396 + MER20 DNA MER1_type 39 217 -2 529 290 102 28 chrX 39906917 39907172 -137066968 + L2 LINE L2 3040 3313 0 21 0 0 0 chrX 39907594 39907615 -137066525 + GC_rich Low_complexity Low_complexity 1 21 0 1615 178 20 14 chrX 39909123 39909416 -137064724 + AluJb SINE Alu 1 295 -17 1396 154 0 9 chrX 39909570 39909791 -137064349 + AluJo SINE Alu 87 305 -7 1532 82 5 10 chrX 39909795 39909990 -137064150 - AluSg SINE Alu -116 194 1 31 0 0 0 chrX 39909990 39910021 -137064119 + AT_rich Low_complexity Low_complexity 1 31 0 383 181 0 0 chrX 39910040 39910112 -137064028 + L1 LINE L1 4943 5014 -1132 781 143 67 0 chrX 39910114 39910233 -137063907 + FLAM_C SINE Alu 2 128 -5 1130 98 7 0 chrX 39910241 39910384 -137063756 + AluY SINE Alu 1 144 -167 784 294 87 7 chrX 39910456 39910744 -137063396 - L2 LINE L2 -290 2982 2675 225 0 0 0 chrX 39910845 39910870 -137063270 + (A)n Simple_repeat Simple_repeat 1 25 0 395 267 316 20 chrX 39910879 39911126 -137063014 - L2 LINE L2 -601 2713 2394 535 315 59 69 chrX 39911126 39911501 -137062639 - L2 LINE L2 -433 2881 2511 2008 145 7 0 chrX 39912034 39912316 -137061824 + AluSx SINE Alu 3 286 -26 228 148 0 115 chrX 39912377 39912438 -137061702 + L1MC4a LINE L1 6075 6128 -1680 386 279 7 68 chrX 39912503 39912650 -137061490 + MIR SINE MIR 9 146 -62 855 296 140 17 chrX 39912770 39913242 -137060898 - L2 LINE L2 -13 3259 2734 514 147 78 0 chrX 39914203 39914305 -137059835 + MIR SINE MIR 63 172 -90 251 259 24 106 chrX 39914320 39914405 -137059735 + L2 LINE L2 3121 3198 -74 233 345 44 0 chrX 39914476 39914589 -137059551 + L2 LINE L2 3165 3282 -31 * 299 173 0 0 chrX 39914569 39914621 -137059519 - L2 LINE L2 -354 2918 2867 387 321 129 13 chrX 39914630 39914894 -137059246 + L2 LINE L2 2929 3227 -45 380 293 0 0 chrX 39914897 39914979 -137059161 - MIR SINE MIR -81 127 46 2221 104 14 0 chrX 39917896 39918185 -137055955 + AluSx SINE Alu 1 293 -19 2328 100 0 19 chrX 39918334 39918643 -137055497 + AluSx SINE Alu 1 303 -9 180 244 39 118 chrX 39918823 39918950 -137055190 - L3 LINE CR1 -38 1539 1423 344 103 17 0 chrX 39919423 39919481 -137054659 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 283 278 61 35 chrX 39920046 39920161 -137053979 - L2 LINE L2 -32 3240 3123 820 283 197 25 chrX 39920845 39921095 -137053045 + L2 LINE L2 2838 3044 -269 866 188 40 143 chrX 39921095 39921472 -137052668 - MER46C DNA MER2_type 0 338 1 820 283 197 25 chrX 39921472 39921627 -137052513 + L2 LINE L2 3044 3313 0 2262 92 14 3 chrX 39921852 39922147 -137051993 - AluSx SINE Alu -14 298 1 816 202 35 40 chrX 39922148 39922346 -137051794 + MIR SINE MIR 62 258 -4 1854 206 81 4 chrX 39922361 39922818 -137051322 - Charlie4a DNA MER1_type 0 508 17 191 299 52 31 chrX 39923013 39923110 -137051030 + L2 LINE L2 1528 1626 -1688 871 167 0 0 chrX 39923150 39923282 -137050858 + FLAM_C SINE Alu 1 132 -11 711 298 256 13 chrX 39923854 39924556 -137049584 + L2 LINE L2 1891 2763 -551 2449 71 3 0 chrX 39924556 39924851 -137049289 - AluSx SINE Alu -16 296 1 958 158 16 32 chrX 39924964 39925023 -137049117 - MER53 DNA DNA -2 187 129 2216 105 28 0 chrX 39925023 39925309 -137048831 - AluSx SINE Alu -18 294 1 958 158 16 32 chrX 39925309 39925439 -137048701 - MER53 DNA DNA -60 129 1 247 284 84 42 chrX 39925518 39925613 -137048527 + L2 LINE L2 3174 3272 0 202 330 0 20 chrX 39925892 39925992 -137048148 + GA-rich Low_complexity Low_complexity 4 101 0 200 224 0 41 chrX 39926496 39926545 -137047595 + MIR SINE MIR 117 163 -99 255 79 0 0 chrX 39928082 39928120 -137046020 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2057 95 0 61 chrX 39928122 39928418 -137045722 - AluSx SINE Alu -23 289 12 1176 85 0 0 chrX 39928419 39928560 -137045580 - AluSq/x SINE Alu -172 141 1 2521 76 0 0 chrX 39928571 39928873 -137045267 - AluSc SINE Alu -7 302 1 956 196 26 10 chrX 39928874 39929068 -137045072 - MIR SINE MIR -64 198 2 1826 182 57 76 chrX 39929210 39929683 -137044457 - MER31B LTR ERV1 -2 464 1 842 132 0 23 chrX 39929695 39929824 -137044316 + FLAM_C SINE Alu 1 126 -17 1875 150 0 20 chrX 39929833 39930127 -137044013 - AluJb SINE Alu -24 288 1 190 250 143 0 chrX 39930148 39930204 -137043936 - MIR SINE MIR -163 99 36 2147 98 0 21 chrX 39930290 39930597 -137043543 - AluSx SINE Alu 0 301 1 312 237 172 32 chrX 39930623 39930716 -137043424 - L2 LINE L2 0 3313 3208 639 136 45 0 chrX 39930739 39930849 -137043291 - MER67B LTR ERV1 -4 657 543 1076 92 42 0 chrX 39930851 39930993 -137043147 - AluSg/x SINE Alu -15 297 150 362 120 0 0 chrX 39930994 39931044 -137043096 - Alu SINE Alu -252 50 1 2132 99 23 7 chrX 39931063 39931365 -137042775 - AluYa5 SINE Alu 0 311 5 836 224 49 32 chrX 39931365 39931611 -137042529 - MER67B LTR ERV1 -407 254 5 261 257 76 76 chrX 39931650 39931821 -137042319 - L2 LINE L2 -272 3041 2871 325 321 9 46 chrX 39931940 39932049 -137042091 + MER91A DNA MER1_type 1 105 -91 2088 142 54 20 chrX 39932164 39932491 -137041649 + MLT1A1 LTR MaLR 1 342 -23 180 0 0 0 chrX 39932491 39932511 -137041629 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2088 142 54 20 chrX 39932511 39932536 -137041604 + MLT1A1 LTR MaLR 342 365 0 2264 116 3 0 chrX 39932564 39932856 -137041284 + AluSx SINE Alu 1 293 -19 2228 107 10 3 chrX 39933248 39933547 -137040593 - AluSx SINE Alu -11 301 1 357 134 0 13 chrX 39933819 39933887 -137040253 + AluSx SINE Alu 1 49 -252 * 362 103 0 0 chrX 39933878 39933934 -137040206 + AluSp/q SINE Alu 158 207 -96 1821 128 0 0 chrX 39933935 39934186 -137039954 + AluSx SINE Alu 42 292 -20 21 57 0 0 chrX 39934187 39934222 -137039918 + AT_rich Low_complexity Low_complexity 1 35 0 2305 110 0 0 chrX 39934316 39934615 -137039525 - AluSq SINE Alu -14 299 1 226 173 291 36 chrX 39935019 39935129 -137039011 - MIR3 SINE MIR -58 150 13 227 250 0 60 chrX 39935187 39935271 -137038869 + GA-rich Low_complexity Low_complexity 5 83 0 753 261 0 33 chrX 39935310 39935494 -137038646 - MER5B DNA MER1_type 0 178 1 238 319 87 51 chrX 39935597 39935735 -137038405 + L3 LINE CR1 947 1089 -488 649 270 75 86 chrX 39935803 39936162 -137037978 - L2 LINE L2 -8 3264 2910 372 275 16 88 chrX 39936285 39936478 -137037662 - L2 LINE L2 -213 3059 2881 2441 45 10 7 chrX 39936513 39936804 -137037336 - AluY SINE Alu -19 292 1 2326 122 0 0 chrX 39936830 39937133 -137037007 - AluSx SINE Alu -9 303 1 896 139 0 15 chrX 39937197 39937334 -137036806 + AluJo SINE Alu 1 135 -177 474 230 0 44 chrX 39937381 39937494 -137036646 - MER5B DNA MER1_type -68 110 3 1803 162 17 7 chrX 39937580 39937870 -137036270 - AluJb SINE Alu -19 293 1 433 229 257 7 chrX 39937870 39938014 -137036126 - MIR SINE MIR -16 246 67 845 135 8 0 chrX 39938163 39938289 -137035851 - AluSg/x SINE Alu -4 306 180 1194 192 156 42 chrX 39938306 39938665 -137035475 - L1MC4a LINE L1 -1888 5920 5521 2444 65 3 0 chrX 39938693 39938985 -137035155 + AluY SINE Alu 2 294 -17 851 157 5 90 chrX 39938986 39939145 -137034995 - L1PA16 LINE L1 -7 6149 6052 2244 119 3 0 chrX 39939145 39939456 -137034684 - AluSx SINE Alu 0 312 1 851 157 5 90 chrX 39939456 39939608 -137034532 - L1PA16 LINE L1 -104 6052 5889 1959 148 24 0 chrX 39939630 39939920 -137034220 + AluJb SINE Alu 1 297 -15 1222 172 5 0 chrX 39939940 39940143 -137033997 - L1PA16 LINE L1 -4 6162 5959 1370 94 0 0 chrX 39940242 39940455 -137033685 + AluSg/x SINE Alu 126 338 0 350 135 0 0 chrX 39940466 39940518 -137033622 + MER66B LTR ERV1 295 346 -140 2281 88 40 0 chrX 39940875 39941171 -137032969 - AluSc SINE Alu -1 308 1 2543 81 3 0 chrX 39941171 39941480 -137032660 - AluSp SINE Alu -3 310 1 1999 118 53 0 chrX 39942476 39942799 -137031341 - L1PA16 LINE L1 -190 5976 5637 2324 92 10 7 chrX 39942894 39943198 -137030942 + AluSx SINE Alu 1 305 -7 1112 155 0 0 chrX 39943951 39944112 -137030028 + FRAM SINE Alu 1 160 -16 590 303 20 47 chrX 39944186 39944549 -137029591 + L1MCa LINE L1 89 325 -5720 2093 114 40 0 chrX 39944558 39944856 -137029284 - AluSx SINE Alu -2 310 1 216 0 0 0 chrX 39944864 39944888 -137029252 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 894 127 0 0 chrX 39944890 39945008 -137029132 - FLAM_C SINE Alu -25 118 1 1790 118 44 34 chrX 39945304 39945348 -137028792 - MER65A LTR ERV1 -1 444 402 2496 80 3 0 chrX 39945348 39945650 -137028490 + AluSg SINE Alu 1 303 -7 1790 118 44 34 chrX 39945650 39945926 -137028214 - MER65A LTR ERV1 -43 402 121 881 176 26 7 chrX 39945940 39946093 -137028047 + FRAM SINE Alu 1 153 -23 241 75 0 113 chrX 39946095 39946148 -137027992 - Alu SINE Alu 0 133 87 1036 217 5 9 chrX 39946150 39946367 -137027773 - AluJo SINE Alu -92 220 5 533 105 59 171 chrX 39946382 39946464 -137027676 - MER65B LTR ERV1 -396 135 45 2320 84 0 3 chrX 39946464 39946777 -137027363 - AluSq SINE Alu 0 312 1 533 105 59 171 chrX 39946777 39946788 -137027352 - MER65B LTR ERV1 -486 45 34 244 0 56 0 chrX 39946788 39946824 -137027316 + (TTG)n Simple_repeat Simple_repeat 2 39 0 533 105 59 171 chrX 39946824 39946880 -137027260 - MER65B LTR ERV1 -497 34 1 1694 76 80 80 chrX 39947203 39947517 -137026623 + LTR61 LTR ERV1 1 314 -281 707 93 37 0 chrX 39947646 39947753 -137026387 - LTR61 LTR ERV1 0 595 485 449 136 49 0 chrX 39947746 39947827 -137026313 + LTR61 LTR ERV1 511 595 0 * 798 92 15 8 chrX 39948068 39948199 -137025941 + (TTCC)n Simple_repeat Simple_repeat 2 133 0 2412 99 0 0 chrX 39948199 39948511 -137025629 - AluSx SINE Alu 0 312 1 1151 102 6 0 chrX 39948866 39949043 -137025097 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 236 170 19 0 chrX 39949050 39949103 -137025037 + CT-rich Low_complexity Low_complexity 1 54 0 2116 143 0 10 chrX 39949103 39949417 -137024723 - AluJb SINE Alu -1 311 1 2324 103 6 16 chrX 39949645 39949957 -137024183 - AluSx SINE Alu -3 309 1 1787 156 46 3 chrX 39949959 39950242 -137023898 - AluSx SINE Alu -17 295 1 980 180 0 50 chrX 39950247 39950447 -137023693 - AluJo SINE Alu -5 307 118 478 275 0 28 chrX 39950450 39950592 -137023548 + L2 LINE L2 3176 3313 0 1041 172 0 0 chrX 39950667 39950824 -137023316 + FRAM SINE Alu 1 153 -23 966 126 61 3 chrX 39950829 39951059 -137023081 + AluJb SINE Alu 2 302 -10 2449 93 0 0 chrX 39951272 39951584 -137022556 - AluSx SINE Alu 0 312 1 441 88 0 29 chrX 39951782 39951850 -137022290 - MER3 DNA MER1_type 0 209 144 1757 152 48 0 chrX 39951851 39952120 -137022020 + AluJo SINE Alu 1 282 -30 1374 143 86 9 chrX 39952126 39952405 -137021735 + L1MB3 LINE L1 5813 6100 -83 2289 110 0 7 chrX 39952407 39952716 -137021424 + AluSc SINE Alu 1 307 -2 1204 138 0 11 chrX 39952718 39952899 -137021241 - AluSg/x SINE Alu -14 298 120 2306 100 0 10 chrX 39952900 39953209 -137020931 - AluSq SINE Alu -7 306 1 664 177 0 0 chrX 39953209 39953322 -137020818 - MER3 DNA MER1_type -96 113 1 1159 192 99 71 chrX 39953569 39953838 -137020302 - L1MB5 LINE L1 -6 6168 5885 2179 132 0 3 chrX 39953838 39954134 -137020006 - AluSx SINE Alu -17 295 1 1159 192 99 71 chrX 39954134 39954228 -137019912 - L1MB5 LINE L1 -289 5885 5795 260 158 35 18 chrX 39954228 39954241 -137019899 - MER46A DNA MER2_type -78 158 145 554 146 285 0 chrX 39954241 39954385 -137019755 + MER46B DNA MER2_type 1 60 -176 2228 106 27 0 chrX 39954425 39954717 -137019423 - AluSx SINE Alu -12 300 1 1813 152 0 0 chrX 39954717 39954978 -137019162 + AluJb SINE Alu 30 292 -20 1309 89 5 0 chrX 39955007 39955197 -137018943 + MER46B DNA MER2_type 46 236 0 914 141 31 0 chrX 39955197 39955360 -137018780 - L1MB5 LINE L1 -391 5783 5616 1724 205 39 39 chrX 39955447 39955856 -137018284 + LTR2 LTR ERV1 41 449 0 2506 73 0 0 chrX 39955865 39956167 -137017973 - AluY SINE Alu -9 302 1 2106 160 7 10 chrX 39956167 39956726 -137017414 - L1MB5 LINE L1 -563 5611 5055 2000 89 0 4 chrX 39957154 39957411 -137016729 + AluSg SINE Alu 54 309 -1 1781 146 7 14 chrX 39957463 39957744 -137016396 + AluJo SINE Alu 1 279 -33 594 0 0 0 chrX 39957746 39957812 -137016328 + (GAGAA)n Simple_repeat Simple_repeat 4 69 0 478 139 10 40 chrX 39957832 39957933 -137016207 + L1MC4a LINE L1 5938 6035 -1773 779 264 171 26 chrX 39958357 39958709 -137015431 - L2 LINE L2 -1 3312 2910 212 122 24 0 chrX 39959061 39959102 -137015038 + CT-rich Low_complexity Low_complexity 4 45 0 180 0 0 0 chrX 39959263 39959283 -137014857 + (TC)n Simple_repeat Simple_repeat 2 21 0 330 26 0 0 chrX 39959374 39959413 -137014727 + (TC)n Simple_repeat Simple_repeat 1 39 0 275 119 0 17 chrX 39959413 39959472 -137014668 + (CA)n Simple_repeat Simple_repeat 2 59 0 1499 171 12 4 chrX 39959908 39960026 -137014114 + AluJo SINE Alu 1 117 -195 191 35 0 35 chrX 39960026 39960055 -137014085 + (TA)n Simple_repeat Simple_repeat 2 29 0 1499 171 12 4 chrX 39960055 39960188 -137013952 + AluJo SINE Alu 117 254 -58 669 253 109 0 chrX 39960201 39960375 -137013765 - L2 LINE L2 -2195 1119 927 245 174 0 0 chrX 39960377 39960423 -137013717 + MLT2B2 LTR ERVL 1 46 -469 4140 108 95 123 chrX 39960423 39960590 -137013550 + ERVL-B1 LTR ERVL 4858 5028 -736 2359 119 0 0 chrX 39960590 39960902 -137013238 - AluSx SINE Alu 0 312 1 4140 108 95 123 chrX 39960902 39961328 -137012812 + ERVL-B1 LTR ERVL 5028 5464 -300 1671 83 13 40 chrX 39961328 39961556 -137012584 + AluSq SINE Alu 1 222 -91 504 143 0 0 chrX 39961556 39961626 -137012514 - AluS SINE Alu -241 71 2 4140 108 95 123 chrX 39961626 39961887 -137012253 + ERVL-B1 LTR ERVL 5462 5757 -7 2165 182 12 103 chrX 39961887 39962459 -137011681 + MLT2B1 LTR ERVL 1 520 0 1208 209 54 179 chrX 39962461 39962655 -137011485 - L2 LINE L2 -2410 904 687 2039 145 0 0 chrX 39962655 39962944 -137011196 - AluSx SINE Alu -20 292 4 1208 209 54 179 chrX 39962944 39962990 -137011150 - L2 LINE L2 -2627 687 637 366 98 0 0 chrX 39962990 39963041 -137011099 - MER66B LTR ERV1 -141 345 295 909 130 0 36 chrX 39963046 39963184 -137010956 - FLAM_C SINE Alu 0 133 1 1208 209 54 179 chrX 39963184 39963645 -137010495 - L2 LINE L2 -2681 633 241 1334 228 40 68 chrX 39963662 39964106 -137010034 + L1MEc LINE L1 34 465 -5931 239 89 200 0 chrX 39964112 39964157 -137009983 - MER51A LTR ERV1 0 634 581 4024 95 14 35 chrX 39964168 39964259 -137009881 - MER51A LTR ERV1 -17 640 549 2406 107 0 0 chrX 39964259 39964567 -137009573 + AluSg SINE Alu 1 308 -2 4024 95 14 35 chrX 39964567 39965113 -137009027 - MER51A LTR ERV1 -108 549 2 670 211 84 84 chrX 39965114 39965315 -137008825 + L1MEc LINE L1 467 670 -5726 2137 136 3 22 chrX 39965315 39965632 -137008508 + AluJb SINE Alu 1 311 -1 670 211 84 84 chrX 39965632 39965667 -137008473 + L1MEc LINE L1 669 703 -5693 982 125 30 71 chrX 39965691 39965859 -137008281 - AluSg/x SINE Alu -18 294 134 842 186 41 29 chrX 39965860 39965915 -137008225 + L1MEc LINE L1 728 781 -5615 4701 137 28 27 chrX 39965915 39966699 -137007441 + LTR1 LTR ERV1 1 785 0 842 186 41 29 chrX 39966699 39966885 -137007255 + L1MEc LINE L1 781 972 -5424 986 112 0 65 chrX 39966886 39967056 -137007084 + FRAM SINE Alu 1 158 -18 1491 196 25 148 chrX 39967187 39967747 -137006393 - LTR41 LTR ERVL -282 491 1 707 179 0 0 chrX 39967817 39967929 -137006211 + FRAM SINE Alu 48 159 -17 831 253 86 27 chrX 39968116 39968417 -137005723 - ERVL LTR ERVL -268 5496 5178 2045 111 31 0 chrX 39968457 39968771 -137005369 + AluSx SINE Alu 1 323 0 5891 268 43 20 chrX 39968784 39970795 -137003345 - ERVL LTR ERVL -607 5157 3194 2253 92 3 0 chrX 39970795 39971090 -137003050 + AluSx SINE Alu 1 296 -16 5891 268 43 20 chrX 39971090 39971120 -137003020 - ERVL LTR ERVL -2570 3194 3166 1818 151 0 23 chrX 39971120 39971425 -137002715 + AluJb SINE Alu 1 298 -14 5891 268 43 20 chrX 39971425 39971601 -137002539 - ERVL LTR ERVL -2598 3166 2820 1768 158 0 48 chrX 39971608 39971924 -137002216 - MLT2D LTR ERVL 0 414 114 996 9 0 0 chrX 39971924 39972037 -137002103 + (TA)n Simple_repeat Simple_repeat 2 114 0 1730 157 11 14 chrX 39972037 39972188 -137001952 - AluJb SINE Alu -27 285 134 2312 69 0 7 chrX 39972188 39972499 -137001641 - AluY SINE Alu 0 311 1 1730 157 11 14 chrX 39972499 39972633 -137001507 - AluJb SINE Alu -178 134 1 2031 131 13 0 chrX 39972643 39972948 -137001192 - AluSx SINE Alu 0 312 4 4799 287 54 47 chrX 39972960 39973615 -137000525 - ERVL LTR ERVL -2930 2834 2185 1777 140 0 11 chrX 39973615 39973894 -137000246 - AluJo SINE Alu -32 280 5 4799 287 54 47 chrX 39973894 39974282 -136999858 - ERVL LTR ERVL -3579 2185 1801 800 141 0 63 chrX 39974282 39974424 -136999716 + FLAM_C SINE Alu 1 133 0 4799 287 54 47 chrX 39974424 39974449 -136999691 - ERVL LTR ERVL -3963 1801 1778 2389 61 0 0 chrX 39974449 39974745 -136999395 + AluY SINE Alu 2 297 -14 4799 287 54 47 chrX 39974745 39975720 -136998420 - ERVL LTR ERVL -3986 1778 775 1932 119 7 0 chrX 39976012 39976327 -136997813 - AluSg1 SINE Alu 0 317 1 2432 71 0 0 chrX 39976331 39976639 -136997501 - AluY SINE Alu -3 308 1 329 195 13 26 chrX 39976957 39977034 -136997106 - LTR41 LTR ERVL 0 773 698 1956 144 3 6 chrX 39977039 39977352 -136996788 + AluJb SINE Alu 1 312 0 2185 201 96 41 chrX 39977411 39978071 -136996069 - LTR41 LTR ERVL -77 696 1 738 189 57 94 chrX 39978073 39978210 -136995930 + L1M4 LINE L1 2889 3013 -3133 1909 142 0 3 chrX 39978210 39978499 -136995641 - AluJo SINE Alu -24 288 1 738 189 57 94 chrX 39978499 39978626 -136995514 + L1M4 LINE L1 3013 3143 -3003 1474 97 0 0 chrX 39978627 39978823 -136995317 + AluSq SINE Alu 2 197 -116 1908 203 30 136 chrX 39978838 39978998 -136995142 + L1M4 LINE L1 3364 3539 -2607 1640 121 3 140 chrX 39978998 39979140 -136995000 + AluJo SINE Alu 1 66 -246 2120 101 0 29 chrX 39979140 39979448 -136994692 + AluSg SINE Alu 1 299 -11 1640 121 3 140 chrX 39979448 39979661 -136994479 + AluJo SINE Alu 66 307 -5 1908 203 30 136 chrX 39979661 39979754 -136994386 + L1M4 LINE L1 3539 3640 -2506 2250 192 119 23 chrX 39979754 39980323 -136993817 - MLT1E3 LTR MaLR 0 624 1 1908 203 30 136 chrX 39980323 39980506 -136993634 + L1M4 LINE L1 3640 3841 -2305 2256 93 0 3 chrX 39980506 39980806 -136993334 + AluSq SINE Alu 1 299 -14 1908 203 30 136 chrX 39980806 39980880 -136993260 + L1M4 LINE L1 3841 3921 -2225 1783 155 0 3 chrX 39980880 39981170 -136992970 + AluJb SINE Alu 2 290 -22 1908 203 30 136 chrX 39981170 39981465 -136992675 + L1M4 LINE L1 3921 4086 -2060 412 125 0 0 chrX 39981533 39981597 -136992543 + LTR49-int LTR ERV1 3921 3984 -4136 * 1218 173 31 35 chrX 39981582 39981808 -136992332 + LTR49-int LTR ERV1 5939 6163 -595 1881 125 7 23 chrX 39981905 39982208 -136991932 - AluJb SINE Alu -14 298 1 1572 182 7 15 chrX 39982208 39982477 -136991663 + LTR49-int LTR ERV1 6831 7097 -1023 1166 164 18 49 chrX 39982480 39982705 -136991435 + MER49 LTR ERV1 1 218 -705 1867 115 7 0 chrX 39982779 39983058 -136991082 + AluSx SINE Alu 9 289 -23 2300 103 0 0 chrX 39983058 39983369 -136990771 + AluSq SINE Alu 1 311 -2 1804 146 56 12 chrX 39983664 39983985 -136990155 + LTR26 LTR ERV1 1 335 -268 2012 126 0 0 chrX 39983986 39984279 -136989861 + AluJb SINE Alu 1 293 -19 731 99 59 0 chrX 39984285 39984386 -136989754 - AluSg/x SINE Alu -53 257 151 1795 179 0 10 chrX 39984406 39984713 -136989427 - MER90 LTR ERV1 0 575 272 306 246 0 0 chrX 39984713 39984774 -136989366 - Tigger5 DNA MER2_type 0 2323 2263 1945 94 40 4 chrX 39984852 39985129 -136989011 - AluSc SINE Alu -22 287 1 1632 125 68 32 chrX 39985138 39985418 -136988722 - AluJo SINE Alu -22 290 1 234 260 14 0 chrX 39985419 39985492 -136988648 - MER94 DNA DNA -56 78 5 738 82 0 0 chrX 39985721 39985818 -136988322 + AluSg/x SINE Alu 205 301 -8 1669 139 31 54 chrX 39985818 39985968 -136988172 + AluJb SINE Alu 1 153 -159 2171 102 3 0 chrX 39985968 39986261 -136987879 + AluSx SINE Alu 1 294 -18 1669 139 31 54 chrX 39986261 39986427 -136987713 + AluJb SINE Alu 153 310 -2 510 168 105 63 chrX 39986427 39986570 -136987570 + LTR49-int LTR ERV1 3828 3976 -2355 * 2742 171 31 53 chrX 39986559 39987046 -136987094 + LTR49-int LTR ERV1 4294 4790 -1541 1785 62 9 0 chrX 39987046 39987272 -136986868 - AluY SINE Alu -18 293 66 2196 100 0 3 chrX 39987273 39987572 -136986568 - AluSq SINE Alu -15 298 1 2742 171 31 53 chrX 39987572 39987794 -136986346 + LTR49-int LTR ERV1 4789 4989 -1342 539 152 0 33 chrX 39987794 39987873 -136986267 - MER41A LTR ERV1 0 554 477 1597 71 0 0 chrX 39987873 39988071 -136986069 + AluY SINE Alu 1 198 -113 539 152 0 33 chrX 39988071 39988083 -136986057 - MER41A LTR ERV1 -77 477 466 237 75 0 0 chrX 39988074 39988114 -136986026 + AluY SINE Alu 269 308 0 * 3536 125 15 32 chrX 39988105 39988691 -136985449 - MER41B LTR ERV1 -57 578 3 3163 111 20 126 chrX 39988692 39988737 -136985403 + LTR49-int LTR ERV1 4985 5033 -913 6608 61 6 38 chrX 39988737 39990445 -136983695 + SVA Other Other 5 1383 -3 3163 111 20 126 chrX 39990445 39990559 -136983581 + LTR49-int LTR ERV1 5033 5157 -789 2176 85 24 3 chrX 39990559 39990852 -136983288 - AluSq SINE Alu -14 299 1 2187 89 20 7 chrX 39990854 39991158 -136982982 - AluY SINE Alu -3 308 1 216 0 0 0 chrX 39991158 39991182 -136982958 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3163 111 20 126 chrX 39991182 39991515 -136982625 + LTR49-int LTR ERV1 5157 5524 -422 2137 117 0 16 chrX 39991515 39991831 -136982309 + AluSx SINE Alu 2 312 0 3163 111 20 126 chrX 39991831 39991907 -136982233 + LTR49-int LTR ERV1 5524 5606 -340 2028 132 0 0 chrX 39991907 39992210 -136981930 + AluSx SINE Alu 5 307 -5 1939 156 0 0 chrX 39992212 39992519 -136981621 + AluSx SINE Alu 1 307 -5 3163 111 20 126 chrX 39992519 39992696 -136981444 + LTR49-int LTR ERV1 5234 5428 -518 541 225 13 40 chrX 39992676 39992827 -136981313 + LTR49-int LTR ERV1 4307 4453 -483 * 2492 106 11 17 chrX 39992827 39993185 -136980955 - LTR29 LTR ERV1 0 622 267 470 17 17 0 chrX 39993192 39993251 -136980889 + (TTCC)n Simple_repeat Simple_repeat 4 63 0 1600 158 13 48 chrX 39993287 39993541 -136980599 - AluJb SINE Alu -6 306 63 2517 47 0 0 chrX 39993541 39993842 -136980298 + AluY SINE Alu 2 302 -9 1600 158 13 48 chrX 39993842 39993898 -136980242 - AluJb SINE Alu -249 63 7 1814 92 69 0 chrX 39993904 39994165 -136979975 - LTR29 LTR ERV1 -342 280 2 1449 111 7 98 chrX 39994281 39994416 -136979724 + LTR49-int LTR ERV1 5907 6053 -278 2246 92 0 7 chrX 39994416 39994722 -136979418 + AluSq SINE Alu 1 304 -9 1449 111 7 98 chrX 39994722 39994826 -136979314 + LTR49-int LTR ERV1 6053 6165 -166 1874 138 0 11 chrX 39994826 39995109 -136979031 + AluJo SINE Alu 1 280 -32 225 0 0 0 chrX 39995116 39995141 -136978999 + (CCAA)n Simple_repeat Simple_repeat 1 25 0 1449 111 7 98 chrX 39995141 39995189 -136978951 + LTR49-int LTR ERV1 6125 6176 -155 825 127 0 8 chrX 39995190 39995316 -136978824 + FLAM_C SINE Alu 1 125 -18 23 33 0 0 chrX 39995316 39995346 -136978794 + AT_rich Low_complexity Low_complexity 1 30 0 642 218 18 41 chrX 39995346 39995516 -136978624 + LTR49-int LTR ERV1 6166 6331 0 2377 117 109 112 chrX 39995516 39995812 -136978328 + LTR49 LTR ERV1 1 296 -299 2183 121 0 6 chrX 39995812 39996127 -136978013 - AluSq SINE Alu 0 313 1 2377 117 109 112 chrX 39996127 39996302 -136977838 + LTR49 LTR ERV1 296 472 -123 1672 140 82 55 chrX 39996302 39996373 -136977767 - THE1C LTR MaLR 0 375 307 2060 129 6 0 chrX 39996373 39996684 -136977456 - AluSq SINE Alu 0 313 1 1672 140 82 55 chrX 39996684 39996977 -136977163 - THE1C LTR MaLR -68 307 1 2377 117 109 112 chrX 39996977 39997101 -136977039 + LTR49 LTR ERV1 472 595 0 1209 179 53 8 chrX 39997185 39997431 -136976709 - LTR54 LTR ERV1 0 510 254 567 207 0 0 chrX 39997433 39997544 -136976596 + Tigger2 DNA MER2_type 2 112 -2606 1755 130 36 18 chrX 39997549 39997847 -136976293 + AluSx SINE Alu 1 303 0 764 140 15 37 chrX 39997849 39997985 -136976155 + AluJo/FLAM SINE Alu 1 133 -169 259 119 0 4 chrX 39997985 39998021 -136976119 + AluY SINE Alu 133 161 -140 2056 190 84 26 chrX 39998021 39998484 -136975656 + LTR2B LTR ERV1 1 490 0 54963 49 17 14 chrX 39998492 40004829 -136969311 + Harlequin LTR ERV1 9 6372 -524 2458 62 7 0 chrX 40004829 40005134 -136969006 + AluY SINE Alu 1 307 -4 54963 49 17 14 chrX 40005134 40005661 -136968479 + Harlequin LTR ERV1 6372 6896 0 1929 176 79 41 chrX 40005680 40006122 -136968018 + LTR2B LTR ERV1 32 490 0 961 108 0 0 chrX 40006122 40006261 -136967879 + AluY SINE Alu 165 303 -8 1875 169 109 45 chrX 40006298 40006778 -136967362 + LTR10A LTR ERV1 1 548 0 * 4070 120 57 15 chrX 40006778 40007428 -136966712 - MER50 LTR ERV1 -54 680 4 5093 111 56 89 chrX 40007437 40007587 -136966553 + Tigger2 DNA MER2_type 123 276 -2442 1958 140 7 10 chrX 40007587 40007895 -136966245 + AluJo SINE Alu 1 307 -5 5093 111 56 89 chrX 40007895 40008712 -136965428 + Tigger2 DNA MER2_type 276 1058 -1660 648 144 0 10 chrX 40008712 40008967 -136965173 + AluJ SINE Alu 1 312 0 637 178 0 59 chrX 40009006 40009141 -136964999 + FLAM_A SINE Alu 14 140 -2 9835 109 40 13 chrX 40009157 40009238 -136964902 + Tigger2 DNA MER2_type 1060 1137 -1581 1878 147 10 3 chrX 40009238 40009545 -136964595 + AluJo SINE Alu 1 309 -3 9835 109 40 13 chrX 40009545 40010945 -136963195 + Tigger2 DNA MER2_type 1137 2581 -137 1706 123 35 60 chrX 40010944 40011260 -136962880 + THE1C LTR MaLR 66 373 -2 * 10224 113 9 54 chrX 40011264 40012178 -136961962 + THE1C-int LTR MaLR 3 812 -768 2059 137 0 3 chrX 40012178 40012478 -136961662 + AluSx SINE Alu 1 299 -13 10224 113 9 54 chrX 40012478 40013215 -136960925 + THE1C-int LTR MaLR 812 1580 0 1812 119 86 47 chrX 40013215 40013576 -136960564 + THE1C LTR MaLR 1 375 0 370 88 0 18 chrX 40013576 40013633 -136960507 + Tigger2 DNA MER2_type 2576 2631 -87 1881 142 3 7 chrX 40013635 40013931 -136960209 - AluJb SINE Alu -17 295 1 869 141 0 7 chrX 40013943 40014078 -136960062 - AluJo SINE Alu -178 134 1 472 202 32 0 chrX 40014078 40014172 -136959968 + Tigger2 DNA MER2_type 2612 2708 -10 1361 147 34 29 chrX 40014172 40014447 -136959693 - LTR54 LTR ERV1 -197 301 1 22 0 0 0 chrX 40014485 40014507 -136959633 + AT_rich Low_complexity Low_complexity 1 22 0 1883 138 0 25 chrX 40014630 40014948 -136959192 + AluJb SINE Alu 3 312 0 1920 148 7 10 chrX 40014948 40015252 -136958888 + AluSx SINE Alu 1 303 -9 1002 154 6 25 chrX 40015451 40015613 -136958527 - AluJb SINE Alu -17 295 137 283 191 19 19 chrX 40015624 40015712 -136958428 - L1ME LINE L1 -316 5854 5767 1662 153 42 21 chrX 40015788 40016075 -136958065 - AluJo SINE Alu -19 293 1 247 313 30 0 chrX 40016357 40016456 -136957684 - L1 LINE L1 -2328 3818 3717 1610 89 0 193 chrX 40016592 40016950 -136957190 - AluSc SINE Alu -8 291 3 251 306 63 9 chrX 40017020 40017131 -136957009 + L2 LINE L2 2971 3087 -185 24 0 0 0 chrX 40017457 40017481 -136956659 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chrX 40018256 40018284 -136955856 + AT_rich Low_complexity Low_complexity 1 28 0 185 253 147 41 chrX 40018941 40019111 -136955029 + L2 LINE L2 2702 2889 -425 291 146 0 0 chrX 40020129 40020170 -136953970 - AluSp SINE Alu -131 172 132 623 160 0 0 chrX 40020171 40020265 -136953875 - AluJ/FLAM SINE Alu -216 96 3 2201 107 7 0 chrX 40020280 40020571 -136953569 - AluSx SINE Alu -15 297 5 189 0 0 0 chrX 40021263 40021284 -136952856 + (T)n Simple_repeat Simple_repeat 1 21 0 234 0 0 0 chrX 40024038 40024064 -136950076 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 315 0 0 0 chrX 40024063 40024098 -136950042 + (TC)n Simple_repeat Simple_repeat 1 35 0 1995 154 0 7 chrX 40024976 40025274 -136948866 - AluJb SINE Alu -16 296 1 2444 73 3 3 chrX 40025456 40025759 -136948381 - AluSp SINE Alu -10 303 1 412 114 29 0 chrX 40025812 40025882 -136948258 - Charlie5 DNA MER1_type 0 2624 2553 2227 107 3 7 chrX 40026632 40026941 -136947199 - AluSg SINE Alu -2 308 1 2163 175 86 28 chrX 40029396 40030647 -136943493 + L1MB2 LINE L1 4577 6036 -135 255 192 39 0 chrX 40031214 40031266 -136942874 + LTR43-int LTR ERV1 1169 1222 -3576 26 0 0 0 chrX 40031718 40031744 -136942396 + AT_rich Low_complexity Low_complexity 1 26 0 5918 60 21 81 chrX 40031757 40033067 -136941073 + SVA Other Other 1 868 -520 6602 67 16 37 chrX 40033086 40034235 -136939905 + SVA Other Other 433 1386 0 244 265 44 0 chrX 40034261 40034329 -136939811 - L1MC4 LINE L1 -20 8022 7952 693 212 77 35 chrX 40034432 40034747 -136939393 - L1MC4 LINE L1 -98 7710 7373 641 308 93 9 chrX 40036047 40036368 -136937772 - L1ME LINE L1 -317 5804 5457 760 152 214 0 chrX 40037023 40037168 -136936972 - AluSg/x SINE Alu -6 303 128 422 165 76 25 chrX 40037161 40037240 -136936900 - AluY SINE Alu -233 85 3 * 252 86 0 0 chrX 40037574 40037609 -136936531 + (A)n Simple_repeat Simple_repeat 1 35 0 184 356 39 10 chrX 40038695 40038799 -136935341 - MIR3 SINE MIR -14 194 88 1073 133 174 0 chrX 40039069 40039264 -136934876 + MER30 DNA MER1_type 2 230 0 1651 158 106 62 chrX 40039652 40039959 -136934181 + MSTD LTR MaLR 13 340 -56 1905 147 0 27 chrX 40039959 40040258 -136933882 - AluJb SINE Alu -21 291 1 1651 158 106 62 chrX 40040258 40040318 -136933822 + MSTD LTR MaLR 340 396 0 291 290 109 52 chrX 40041150 40041343 -136932797 + MIR SINE MIR 43 246 -16 335 291 63 16 chrX 40042865 40042992 -136931148 - L1ME LINE L1 -458 5663 5531 228 238 32 0 chrX 40045563 40045626 -136928514 + L1ME LINE L1 5541 5605 -516 1543 153 219 3 chrX 40046940 40047292 -136926848 + MSTA LTR MaLR 1 428 0 2415 62 3 0 chrX 40047950 40048238 -136925902 + AluY SINE Alu 1 289 -22 200 59 29 0 chrX 40048241 40048275 -136925865 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1089 148 124 5 chrX 40048883 40049093 -136925047 + MER46A DNA MER2_type 1 235 -1 15123 134 60 13 chrX 40050327 40052920 -136921220 + Tigger2 DNA MER2_type 1 2715 -3 271 208 139 0 chrX 40054050 40054122 -136920018 + L2 LINE L2 3171 3252 -20 437 185 22 0 chrX 40055286 40055378 -136918762 - Charlie5 DNA MER1_type -2496 116 23 2311 88 7 0 chrX 40055632 40055927 -136918213 - AluSg SINE Alu -13 297 1 242 276 0 17 chrX 40056270 40056328 -136917812 + MIR SINE MIR 42 98 -164 346 209 264 0 chrX 40056513 40056642 -136917498 - MIR SINE MIR -47 215 53 2240 105 0 22 chrX 40056656 40056969 -136917171 + AluSx SINE Alu 1 306 -6 1357 224 0 4 chrX 40056973 40057232 -136916908 + AluJo SINE Alu 40 297 -15 2086 101 14 11 chrX 40057250 40057536 -136916604 + AluSx SINE Alu 1 287 -25 441 0 0 0 chrX 40058197 40058246 -136915894 + (TG)n Simple_repeat Simple_repeat 2 50 0 459 219 43 82 chrX 40060524 40060757 -136913383 + MIR SINE MIR 31 254 -8 209 338 14 0 chrX 40060987 40061058 -136913082 + MIR SINE MIR 78 149 -59 195 271 192 87 chrX 40061286 40061515 -136912625 - L2 LINE L2 -20 3252 3000 448 212 0 0 chrX 40062099 40062184 -136911956 - AluJ/FRAM SINE Alu -14 298 214 213 210 0 0 chrX 40062557 40062619 -136911521 + GA-rich Low_complexity Low_complexity 1 62 0 231 190 0 0 chrX 40062910 40062968 -136911172 + (TGG)n Simple_repeat Simple_repeat 3 60 0 308 277 123 8 chrX 40063586 40063716 -136910424 + MIR SINE MIR 106 250 -12 216 329 136 0 chrX 40063743 40063883 -136910257 + MIR SINE MIR 48 206 -56 182 185 0 0 chrX 40064763 40064790 -136909350 - L2 LINE L2 -24 3289 3263 1881 148 3 3 chrX 40064863 40065153 -136908987 - AluSx SINE Alu -22 290 1 351 263 10 0 chrX 40065161 40065260 -136908880 - MIR SINE MIR -118 144 45 214 370 58 45 chrX 40065567 40065721 -136908419 + MIR3 SINE MIR 2 157 -51 1560 183 11 14 chrX 40066629 40066914 -136907226 - AluJo SINE Alu -28 284 1 270 231 51 77 chrX 40067154 40067271 -136906869 - MIR SINE MIR -145 117 4 1821 128 0 0 chrX 40067764 40068051 -136906089 + AluSx SINE Alu 34 320 0 236 337 23 0 chrX 40068165 40068251 -136905889 + MER117 DNA MER1_type 71 158 -39 357 259 89 9 chrX 40068297 40068409 -136905731 + MIR SINE MIR 20 140 -68 759 113 81 65 chrX 40068431 40068555 -136905585 - FLAM_C SINE Alu -6 127 2 1991 143 7 3 chrX 40069536 40069830 -136904310 - AluJb SINE Alu -17 295 1 2273 108 0 3 chrX 40069840 40070146 -136903994 - AluSx SINE Alu -7 305 1 21 0 0 0 chrX 40070933 40070954 -136903186 + AT_rich Low_complexity Low_complexity 1 21 0 248 271 243 0 chrX 40074068 40074175 -136899965 + L2 LINE L2 3178 3310 -3 327 263 160 13 chrX 40074750 40074906 -136899234 + L2 LINE L2 2550 2728 -586 * 453 284 189 37 chrX 40074875 40075171 -136898969 + L2 LINE L2 2924 3264 -8 228 231 46 146 chrX 40075214 40075344 -136898796 - MIR3 SINE MIR -1 207 91 204 135 0 0 chrX 40076321 40076358 -136897782 + (TCC)n Simple_repeat Simple_repeat 3 39 0 431 201 106 0 chrX 40077244 40077357 -136896783 + MIR SINE MIR 37 163 -67 1585 167 0 0 chrX 40079833 40080090 -136894050 - AluJb SINE Alu -11 301 45 330 123 0 0 chrX 40080270 40080327 -136893813 + (TATG)n Simple_repeat Simple_repeat 4 60 0 235 188 0 0 chrX 40080328 40080376 -136893764 - LTR66 LTR ERVL -172 438 391 452 297 81 0 chrX 40080376 40080524 -136893616 + L1MC4 LINE L1 6767 6926 -1116 760 171 108 0 chrX 40080526 40080655 -136893485 + FLAM_C SINE Alu 1 143 0 883 159 40 7 chrX 40080758 40080909 -136893231 - AluJo SINE Alu -111 201 46 1032 285 109 25 chrX 40080910 40081397 -136892743 + L1MC4 LINE L1 7366 7893 -149 268 264 11 11 chrX 40081508 40081599 -136892541 + L1MC4 LINE L1 6912 7002 -1040 316 267 48 36 chrX 40081810 40081975 -136892165 + L1MC4 LINE L1 7115 7281 -761 286 233 90 109 chrX 40082116 40082382 -136891758 + L1MC5 LINE L1 7326 7586 -375 1673 133 53 21 chrX 40083241 40083526 -136890614 - AluJo SINE Alu -18 294 1 23 0 0 0 chrX 40083531 40083554 -136890586 + AT_rich Low_complexity Low_complexity 1 23 0 210 250 0 0 chrX 40084141 40084185 -136889955 - MIR SINE MIR -109 153 110 29 47 0 0 chrX 40084281 40084324 -136889816 + AT_rich Low_complexity Low_complexity 1 43 0 954 190 25 13 chrX 40084325 40084483 -136889657 - FAM SINE Alu -11 164 5 185 125 75 113 chrX 40084692 40084772 -136889368 - L2 LINE L2 -19 3253 3177 620 153 72 0 chrX 40084955 40085066 -136889074 + L1MB5 LINE L1 6048 6166 -8 454 311 92 5 chrX 40085203 40085424 -136888716 + MIR SINE MIR 17 254 -8 1762 153 55 4 chrX 40085531 40085806 -136888334 + AluJo SINE Alu 1 289 -23 1637 225 165 51 chrX 40085828 40086635 -136887505 + L1ME3 LINE L1 5250 6159 -3 265 324 173 15 chrX 40087020 40087356 -136886784 + L2 LINE L2 2281 2669 -645 705 198 0 8 chrX 40087448 40087569 -136886571 - AluSp/q SINE Alu -22 291 172 1762 88 0 18 chrX 40087582 40087809 -136886331 - AluSq SINE Alu -90 223 1 194 319 131 77 chrX 40088464 40088724 -136885416 + L2 LINE L2 2968 3241 -31 259 255 0 0 chrX 40091530 40091584 -136882556 - MIR SINE MIR -92 116 63 758 150 231 12 chrX 40091977 40092150 -136881990 - MER46A DNA MER2_type 0 236 26 584 126 23 23 chrX 40092592 40092707 -136881433 - AluJb SINE Alu 0 312 201 204 40 0 0 chrX 40094927 40094952 -136879188 + (A)n Simple_repeat Simple_repeat 1 25 0 630 189 63 119 chrX 40094972 40095274 -136878866 + L1ME2 LINE L1 5725 6009 -155 1806 147 33 0 chrX 40095323 40095638 -136878502 + AluSx SINE Alu 1 324 0 340 288 144 25 chrX 40096242 40096360 -136877780 - L2 LINE L2 -1 3271 3140 219 36 0 0 chrX 40096433 40096461 -136877679 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 2146 140 0 7 chrX 40097721 40098028 -136876112 + AluSq SINE Alu 1 305 -8 320 301 26 53 chrX 40098135 40098248 -136875892 - MIR3 SINE MIR -21 187 78 305 354 96 11 chrX 40098541 40098719 -136875421 - MIR SINE MIR -4 258 66 1805 122 0 0 chrX 40099018 40099264 -136874876 - AluSx SINE Alu -64 248 3 1177 167 142 4 chrX 40099708 40099941 -136874199 - AluJo SINE Alu -47 265 1 254 225 14 14 chrX 40101493 40101564 -136872576 - L1ME LINE L1 -299 5822 5752 252 241 98 45 chrX 40101626 40101738 -136872402 - L1ME LINE L1 -483 5638 5521 316 286 132 30 chrX 40101870 40102136 -136872004 + L1M4 LINE L1 3106 3398 -2748 2262 100 10 3 chrX 40102300 40102599 -136871541 - AluSx SINE Alu -8 304 4 186 43 0 0 chrX 40103327 40103350 -136870790 + (A)n Simple_repeat Simple_repeat 1 23 0 1682 157 58 24 chrX 40103990 40104283 -136869857 - AluJb SINE Alu -9 303 1 908 223 89 34 chrX 40107205 40107532 -136866608 + L1M4 LINE L1 3978 4322 -1824 885 117 0 0 chrX 40107902 40108022 -136866118 - AluSq/x SINE Alu -193 120 1 1365 107 0 0 chrX 40108066 40108243 -136865897 + AluSg/x SINE Alu 115 291 -21 192 77 0 0 chrX 40108243 40108269 -136865871 + (TAAG)n Simple_repeat Simple_repeat 1 26 0 504 232 0 0 chrX 40109530 40109655 -136864485 + (CTGGGG)n Simple_repeat Simple_repeat 6 130 0 324 0 0 0 chrX 40109948 40109984 -136864156 + (TG)n Simple_repeat Simple_repeat 2 37 0 1053 178 0 6 chrX 40110466 40110646 -136863494 - AluJb SINE Alu -84 228 50 248 228 130 22 chrX 40110778 40110870 -136863270 - L2 LINE L2 -56 3257 3156 24 0 0 0 chrX 40111277 40111301 -136862839 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 40112189 40112211 -136861929 + AT_rich Low_complexity Low_complexity 1 22 0 1801 135 104 18 chrX 40112905 40113231 -136860909 + MER46B DNA MER2_type 8 236 0 246 320 104 32 chrX 40113878 40114003 -136860137 - L2 LINE L2 0 3272 3139 218 277 161 19 chrX 40114058 40114213 -136859927 - MIR SINE MIR -29 233 57 277 174 71 82 chrX 40114933 40115031 -136859109 - MIR SINE MIR -79 183 87 355 139 16 30 chrX 40118053 40118120 -136856020 + AluJ/FRAM SINE Alu 232 282 -20 38 75 0 0 chrX 40118716 40118796 -136855344 + AT_rich Low_complexity Low_complexity 1 80 0 82 48 0 0 chrX 40118907 40119031 -136855109 + AT_rich Low_complexity Low_complexity 1 124 0 1543 158 18 32 chrX 40119061 40119346 -136854794 - AluJo SINE Alu -31 281 1 195 42 0 0 chrX 40119624 40119648 -136854492 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 797 223 67 10 chrX 40119705 40119898 -136854242 - MER105 DNA DNA 0 204 1 461 256 58 7 chrX 40119965 40120102 -136854038 + L1M4 LINE L1 6 149 -6393 1919 107 7 21 chrX 40120164 40120445 -136853695 + AluSx SINE Alu 1 277 -35 296 241 0 13 chrX 40120471 40120550 -136853590 + L1ME LINE L1 5667 5744 -377 499 325 119 17 chrX 40120653 40121074 -136853066 - L1M4 LINE L1 -1010 5136 4673 22 35 0 0 chrX 40121699 40121728 -136852412 + AT_rich Low_complexity Low_complexity 1 29 0 1639 71 0 5 chrX 40121882 40122093 -136852047 + AluY SINE Alu 97 306 -5 586 180 112 112 chrX 40122337 40122515 -136851625 + MER5A DNA MER1_type 1 178 -11 356 200 158 14 chrX 40122803 40123017 -136851123 + L1ME4a LINE L1 5198 5443 -719 353 231 89 0 chrX 40123089 40123229 -136850911 + L1MC/D LINE L1 5684 5843 -319 245 309 49 24 chrX 40123531 40123654 -136850486 - MIR SINE MIR -14 248 123 1954 136 0 3 chrX 40123813 40124100 -136850040 + AluJb SINE Alu 9 294 -18 641 136 291 41 chrX 40125659 40125909 -136848231 - Tigger7 DNA MER2_type -10 2477 1 366 271 50 48 chrX 40126074 40126317 -136847823 - L1MA1 LINE L1 -285 5885 5639 412 283 127 9 chrX 40126322 40126534 -136847606 - L1ME LINE L1 -612 5558 5322 2210 113 0 7 chrX 40127079 40127380 -136846760 - AluSq SINE Alu -14 299 1 1817 167 0 23 chrX 40127547 40127853 -136846287 - AluJb SINE Alu -13 299 1 1150 44 0 0 chrX 40129329 40129466 -136844674 + AluY SINE Alu 170 306 -5 285 29 0 0 chrX 40129466 40129500 -136844640 + (TA)n Simple_repeat Simple_repeat 2 35 0 1947 141 7 0 chrX 40129893 40130177 -136843963 - AluJo SINE Alu -26 286 1 233 49 73 0 chrX 40132245 40132286 -136841854 + A-rich Low_complexity Low_complexity 2 45 0 317 338 76 13 chrX 40132800 40132957 -136841183 + MIR SINE MIR 2 168 -94 182 265 48 60 chrX 40133082 40133165 -136840975 + MIR SINE MIR 107 188 -74 2392 295 43 38 chrX 40133361 40134228 -136839912 - ERVL LTR ERVL -2141 3623 2753 322 200 0 0 chrX 40134520 40134585 -136839555 + L1ME4a LINE L1 5594 5658 -463 1063 146 9 59 chrX 40134879 40135099 -136839041 - L1MA10 LINE L1 -15 6319 6111 1013 206 144 23 chrX 40135101 40135407 -136838733 + MER2 DNA MER2_type 2 344 -1 1202 189 28 12 chrX 40135412 40135660 -136838480 - L1MB1 LINE L1 -82 6107 5856 1040 165 13 43 chrX 40135662 40135892 -136838248 + L1M3 LINE L1 5254 5476 -692 1414 142 9 0 chrX 40136672 40136891 -136837249 + AluJb SINE Alu 87 307 -5 287 241 342 0 chrX 40136998 40137156 -136836984 - MIR SINE MIR -30 232 21 22 0 0 0 chrX 40137723 40137745 -136836395 + AT_rich Low_complexity Low_complexity 1 22 0 326 304 93 37 chrX 40138214 40138484 -136835656 + L1ME4a LINE L1 5630 5914 -207 808 239 10 15 chrX 40139518 40139723 -136834417 + L1M4 LINE L1 4049 4252 -1894 1461 97 18 26 chrX 40139767 40139817 -136834323 + AluY SINE Alu 83 132 -179 2142 112 0 7 chrX 40139817 40140113 -136834027 + AluSc SINE Alu 4 297 -12 1461 97 18 26 chrX 40140113 40140288 -136833852 + AluY SINE Alu 132 306 -5 1447 201 110 44 chrX 40140291 40140818 -136833322 + L1M4 LINE L1 4490 5051 -1095 6767 180 49 22 chrX 40140822 40141012 -136833128 + L1MC1 LINE L1 3885 4068 -2265 1530 102 195 12 chrX 40141012 40141258 -136832882 + AluSg1 SINE Alu 1 291 -18 6767 180 49 22 chrX 40141258 40141488 -136832652 + L1MC1 LINE L1 4068 4290 -2043 2503 59 0 3 chrX 40141488 40141793 -136832347 + AluY SINE Alu 1 304 -7 6767 180 49 22 chrX 40141793 40143605 -136830535 + L1MC1 LINE L1 4290 6333 0 341 291 159 11 chrX 40144579 40144761 -136829379 - MIR SINE MIR -48 214 6 2605 47 0 0 chrX 40144765 40145064 -136829076 - AluY SINE Alu -12 299 1 479 216 196 7 chrX 40145812 40145960 -136828180 + MER5A DNA MER1_type 13 188 -1 374 250 59 52 chrX 40145960 40146073 -136828067 + MIR SINE MIR 28 141 -121 235 293 52 0 chrX 40146331 40146389 -136827751 + L2 LINE L2 3248 3308 -5 * 336 341 104 0 chrX 40146385 40146549 -136827591 - L2 LINE L2 -1039 2275 2095 656 133 108 25 chrX 40146549 40146669 -136827471 + AluJb SINE Alu 1 130 -182 349 312 209 24 chrX 40146676 40146961 -136827179 - L2 LINE L2 -1194 2120 1761 2220 95 0 0 chrX 40146961 40147244 -136826896 + AluSq SINE Alu 1 283 -30 349 312 209 24 chrX 40147244 40147298 -136826842 - L2 LINE L2 -1553 1761 1718 1868 151 0 17 chrX 40147785 40148083 -136826057 - AluJb SINE Alu -19 293 1 226 226 75 0 chrX 40148780 40148833 -136825307 - MIR SINE MIR -172 90 34 660 60 0 180 chrX 40149591 40149741 -136824399 + AluJo SINE Alu 13 135 -177 242 265 42 89 chrX 40149872 40150014 -136824126 - MER5A DNA MER1_type -32 157 4 430 209 93 29 chrX 40150061 40150200 -136823940 + L1MC5 LINE L1 7760 7907 -54 224 268 98 71 chrX 40150496 40150608 -136823532 + L2 LINE L2 3140 3254 -18 2008 144 39 8 chrX 40151043 40151398 -136822742 - MER47A DNA MER2_type 0 366 1 2362 97 0 0 chrX 40151892 40152190 -136821950 + AluSg SINE Alu 1 298 -12 404 227 213 7 chrX 40152242 40152383 -136821757 + MIR SINE MIR 6 175 -87 185 311 14 14 chrX 40152892 40152966 -136821174 + MIR SINE MIR 151 224 -38 288 345 94 47 chrX 40154060 40154231 -136819909 + MIR3 SINE MIR 7 185 -23 225 237 0 0 chrX 40154538 40154597 -136819543 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 228 214 0 0 chrX 40154738 40154780 -136819360 + L1ME LINE L1 5560 5601 -520 1346 106 19 14 chrX 40154810 40155018 -136819122 + L1PB1 LINE L1 5942 6150 -1 245 135 135 0 chrX 40155179 40155231 -136818909 + L1ME LINE L1 5762 5820 -301 2488 45 7 13 chrX 40155239 40155547 -136818593 + AluY SINE Alu 1 306 -5 287 171 132 0 chrX 40155716 40155792 -136818348 + L1ME4a LINE L1 5762 5847 -274 503 261 107 38 chrX 40155877 40155996 -136818144 + L1MC4 LINE L1 7694 7803 -239 2384 78 14 0 chrX 40155996 40156290 -136817850 - AluSx SINE Alu -14 298 1 503 261 107 38 chrX 40156290 40156488 -136817652 + L1MC4 LINE L1 7803 8033 -9 23 0 0 0 chrX 40156848 40156871 -136817269 + AT_rich Low_complexity Low_complexity 1 23 0 1370 158 186 47 chrX 40157026 40157209 -136816931 - MER46B DNA MER2_type -2495 236 114 689 159 0 0 chrX 40157209 40157316 -136816824 - L1PB4 LINE L1 -12 6144 6038 1370 158 186 47 chrX 40157316 40157449 -136816691 - MER46B DNA MER2_type -2617 114 1 232 267 111 41 chrX 40157703 40157875 -136816265 - L1ME LINE L1 -538 5583 5400 237 128 43 21 chrX 40157998 40158045 -136816095 + L1ME4a LINE L1 5983 6030 -91 210 203 169 17 chrX 40158515 40158574 -136815566 + L2 LINE L2 3242 3309 -4 * 324 228 51 0 chrX 40158573 40158652 -136815488 - MIR SINE MIR -108 154 72 226 287 53 21 chrX 40158683 40158777 -136815363 - MIR SINE MIR -40 222 126 281 296 167 9 chrX 40159261 40159369 -136814771 + L2 LINE L2 3143 3267 -5 256 249 301 12 chrX 40159935 40160108 -136814032 - MIR SINE MIR -6 256 34 1635 191 82 77 chrX 40160297 40160908 -136813232 + L1MC5 LINE L1 6754 7367 -594 834 147 35 7 chrX 40160909 40161052 -136813088 + MER5A DNA MER1_type 43 189 0 * 954 230 24 19 chrX 40161052 40161260 -136812880 - MIR SINE MIR -46 216 8 22 0 0 0 chrX 40161322 40161344 -136812796 + AT_rich Low_complexity Low_complexity 1 22 0 248 247 78 0 chrX 40161715 40161792 -136812348 - L3 LINE CR1 -10 1567 1485 966 246 67 30 chrX 40162807 40163237 -136810903 + L1MC5 LINE L1 7372 7817 -144 832 139 0 29 chrX 40163237 40163374 -136810766 + AluJb SINE Alu 1 133 -179 339 203 120 15 chrX 40163386 40163519 -136810621 + L1MC5 LINE L1 7801 7947 -14 2407 47 7 0 chrX 40164895 40165170 -136808970 + AluSc SINE Alu 21 297 -12 189 0 0 0 chrX 40165921 40165942 -136808198 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 255 218 184 0 chrX 40165944 40166031 -136808109 - MIR SINE MIR -76 186 84 285 176 88 33 chrX 40168400 40168491 -136805649 + L1MC/D LINE L1 5375 5470 -2338 358 289 132 36 chrX 40168860 40169247 -136804893 - L1M4 LINE L1 -1396 4750 4327 1301 253 38 38 chrX 40169279 40169698 -136804442 + L1MC/D LINE L1 5376 5794 -2014 208 193 70 0 chrX 40170359 40170416 -136803724 + (CCCCAG)n Simple_repeat Simple_repeat 2 62 0 187 191 21 0 chrX 40170821 40170868 -136803272 + MIR SINE MIR 205 252 -10 1840 123 11 18 chrX 40171340 40171617 -136802523 - AluJb SINE Alu -18 294 20 615 257 72 116 chrX 40171779 40172150 -136801990 - L1MC4a LINE L1 -215 5906 5635 1852 119 7 70 chrX 40172150 40172452 -136801688 - AluJb SINE Alu -18 294 12 615 257 72 116 chrX 40172452 40172682 -136801458 - L1MC4a LINE L1 -486 5635 5396 1560 116 38 96 chrX 40172687 40173095 -136801045 - AluJo SINE Alu 0 397 7 464 309 102 37 chrX 40173332 40173734 -136800406 - L1MC4a LINE L1 -3039 3107 2680 562 177 0 10 chrX 40173833 40173929 -136800211 - FRAM SINE Alu -10 166 72 2211 109 0 28 chrX 40173978 40174298 -136799842 - AluSx SINE Alu -1 311 1 23 0 0 0 chrX 40174643 40174666 -136799474 + AT_rich Low_complexity Low_complexity 1 23 0 381 274 26 9 chrX 40174842 40174955 -136799185 + L2 LINE L2 3148 3262 -10 184 151 132 38 chrX 40174959 40175012 -136799128 - MIR SINE MIR -112 150 93 852 295 56 40 chrX 40175137 40176066 -136798074 - L1ME LINE L1 -376 5745 4801 461 213 109 20 chrX 40176068 40176243 -136797897 + MIR SINE MIR 12 246 -16 2450 214 73 25 chrX 40176470 40176543 -136797597 + L1M4 LINE L1 4180 4248 -1898 312 27 0 0 chrX 40176543 40176580 -136797560 + (CA)n Simple_repeat Simple_repeat 1 37 0 2450 214 73 25 chrX 40176580 40177147 -136796993 + L1M4 LINE L1 4248 4851 -1295 462 124 124 0 chrX 40177148 40177237 -136796903 + L1M4 LINE L1 4964 5063 -1083 1406 78 0 6 chrX 40177242 40177421 -136796719 - AluSp SINE Alu -2 311 134 2121 125 7 0 chrX 40177421 40177718 -136796422 - AluSx SINE Alu -13 299 1 667 225 99 31 chrX 40177718 40177940 -136796200 + L1ME1 LINE L1 5905 6141 -25 1004 247 118 35 chrX 40178164 40178559 -136795581 - MLT1L LTR MaLR -45 542 144 781 160 88 11 chrX 40178559 40178740 -136795400 + MER5C DNA MER1_type 5 199 -125 290 300 0 27 chrX 40178751 40178861 -136795279 - MLT1L LTR MaLR -508 107 1 618 209 29 112 chrX 40179255 40179347 -136794793 + MER112 DNA MER1_type 2 100 -156 369 0 0 0 chrX 40179347 40179388 -136794752 + (CA)n Simple_repeat Simple_repeat 2 42 0 618 209 29 112 chrX 40179388 40179573 -136794567 + MER112 DNA MER1_type 100 256 0 788 269 21 21 chrX 40180201 40180439 -136793701 - Charlie8 DNA MER1_type -2173 244 7 7979 17 0 1 chrX 40182013 40183508 -136790632 - L1PA2 LINE L1 -5 6150 4657 220 133 0 22 chrX 40183532 40183577 -136790563 + (CAAAAA)n Simple_repeat Simple_repeat 4 47 0 420 207 73 73 chrX 40183966 40184145 -136789995 + L1MC5 LINE L1 7732 7910 -51 2596 196 84 25 chrX 40184647 40185219 -136788921 + MLT1E2 LTR MaLR 21 626 0 2192 101 0 7 chrX 40185320 40185616 -136788524 - AluSx SINE Alu -18 294 1 462 307 93 20 chrX 40186051 40186505 -136787635 + MLT1J LTR MaLR 3 511 0 1921 139 3 20 chrX 40186576 40186870 -136787270 + AluJo SINE Alu 1 289 -23 1230 179 128 12 chrX 40186908 40187165 -136786975 + AluSg1 SINE Alu 1 287 -22 709 233 108 85 chrX 40187247 40187327 -136786813 - L1MC4 LINE L1 0 8042 7965 2070 104 9 57 chrX 40187327 40187644 -136786496 - AluSx SINE Alu -10 302 1 709 233 108 85 chrX 40187644 40188000 -136786140 - L1MC4 LINE L1 -77 7965 7596 424 298 0 35 chrX 40188266 40188340 -136785800 + L1M1 LINE L1 5416 5491 -678 2411 88 3 0 chrX 40188340 40188647 -136785493 + AluSp SINE Alu 1 308 -5 424 298 0 35 chrX 40188647 40188789 -136785351 + L1M1 LINE L1 5491 5622 -547 272 258 108 8 chrX 40188757 40188877 -136785263 + L1ME3A LINE L1 5764 5895 -275 * 299 252 75 0 chrX 40189058 40189165 -136784975 + L1MC4 LINE L1 7928 8042 0 1333 226 152 18 chrX 40189564 40189953 -136784187 + MLT1E2 LTR MaLR 19 459 -167 907 128 28 7 chrX 40189953 40190094 -136784046 + MER101 LTR ERV1 1 144 -330 1346 117 0 39 chrX 40190094 40190299 -136783841 - AluSg/x SINE Alu -14 296 100 2242 94 11 0 chrX 40190398 40190696 -136783444 - AluSx SINE Alu 0 303 3 1165 147 13 89 chrX 40190696 40190921 -136783219 + MER101 LTR ERV1 134 341 -133 781 184 0 0 chrX 40190923 40191048 -136783092 + FRAM SINE Alu 4 128 -48 882 102 23 0 chrX 40191094 40191222 -136782918 + MER101 LTR ERV1 344 474 0 759 156 23 0 chrX 40191231 40191359 -136782781 + MLT1D LTR MaLR 375 505 0 2492 87 0 0 chrX 40191529 40191838 -136782302 - AluSg SINE Alu -1 309 1 2126 104 10 10 chrX 40192311 40192608 -136781532 - AluJb SINE Alu -15 297 1 1755 146 65 4 chrX 40192636 40192911 -136781229 - AluJo SINE Alu -20 292 1 525 266 80 13 chrX 40192938 40193164 -136780976 - L1ME4a LINE L1 -4 6117 5877 471 211 139 53 chrX 40193223 40193431 -136780709 - L1MC4 LINE L1 -312 7730 7505 2407 81 3 0 chrX 40194200 40194497 -136779643 + AluSq SINE Alu 1 298 -15 2148 143 2 56 chrX 40194531 40194875 -136779265 + MLT1B LTR MaLR 1 321 -69 2487 66 10 3 chrX 40194875 40195179 -136778961 - AluSc SINE Alu -3 306 1 2148 143 2 56 chrX 40195179 40195246 -136778894 + MLT1B LTR MaLR 321 390 0 768 203 7 7 chrX 40195304 40195457 -136778683 - MER5B DNA MER1_type -25 153 1 2085 149 0 9 chrX 40195727 40196042 -136778098 - AluJb SINE Alu 0 312 1 866 124 0 16 chrX 40196169 40196298 -136777842 + FLAM_C SINE Alu 1 127 -6 1826 180 0 3 chrX 40196310 40196610 -136777530 + AluJo SINE Alu 1 299 -13 2405 65 0 0 chrX 40196787 40197077 -136777063 - AluY SINE Alu -21 290 1 574 181 19 0 chrX 40197084 40197189 -136776951 - FLAM_A SINE Alu -18 124 18 530 208 46 8 chrX 40197213 40197343 -136776797 - L1ME1 LINE L1 -17 6149 6015 1313 223 150 28 chrX 40198192 40198685 -136775455 - LTR67 LTR ERVL -1 556 4 1014 251 135 39 chrX 40200113 40200572 -136773568 + MLT1L LTR MaLR 5 507 -108 279 0 0 0 chrX 40200652 40200683 -136773457 + (TG)n Simple_repeat Simple_repeat 2 32 0 2170 116 3 0 chrX 40201388 40201682 -136772458 + AluSx SINE Alu 1 295 -17 540 292 56 0 chrX 40201997 40202175 -136771965 - MER5A DNA MER1_type -1 188 1 616 112 11 0 chrX 40202480 40202569 -136771571 - L1MC2 LINE L1 -8 6336 6247 2390 93 3 0 chrX 40202733 40203034 -136771106 + AluSx SINE Alu 1 302 -10 225 193 263 35 chrX 40203073 40203187 -136770953 - L1MA10 LINE L1 -1 6333 6194 2131 153 52 30 chrX 40203190 40203735 -136770405 - MLT2A2 LTR ERVL 0 554 1 2218 124 0 0 chrX 40203758 40204049 -136770091 - AluSx SINE Alu -21 291 1 2624 204 36 88 chrX 40204049 40204272 -136769868 - L1ME1 LINE L1 -143 6023 5790 1560 156 24 73 chrX 40204272 40204600 -136769540 - AluJo SINE Alu 0 312 1 2624 204 36 88 chrX 40204600 40204817 -136769323 - L1ME1 LINE L1 -376 5790 5563 10538 68 14 16 chrX 40204817 40206206 -136767934 + SVA Other Other 1 1386 0 2624 204 36 88 chrX 40206206 40206573 -136767567 - L1ME1 LINE L1 -603 5563 5257 788 186 53 75 chrX 40206574 40206627 -136767513 + MSTB1 LTR MaLR 1 54 -372 2589 61 0 3 chrX 40206627 40206938 -136767202 + AluY SINE Alu 1 310 -1 788 186 53 75 chrX 40206938 40207072 -136767068 + MSTB1 LTR MaLR 54 184 -242 873 150 0 0 chrX 40207086 40207219 -136766921 - AluJo SINE Alu -178 134 2 1318 188 53 0 chrX 40207220 40207465 -136766675 + MSTB1 LTR MaLR 175 432 0 8570 189 27 12 chrX 40207465 40207808 -136766332 + MSTB1-int LTR MaLR 1 337 -1314 2386 75 0 0 chrX 40207808 40208102 -136766038 + AluY SINE Alu 1 294 -17 8570 189 27 12 chrX 40208102 40208215 -136765925 + MSTB1-int LTR MaLR 337 447 -1204 2179 130 3 0 chrX 40208215 40208515 -136765625 + AluSq SINE Alu 1 301 -12 8570 189 27 12 chrX 40208515 40209601 -136764539 + MSTB1-int LTR MaLR 447 1572 -79 1739 158 10 17 chrX 40209601 40209893 -136764247 + AluJb SINE Alu 15 304 -8 8570 189 27 12 chrX 40209893 40209975 -136764165 + MSTB1-int LTR MaLR 1572 1651 0 1751 155 81 71 chrX 40209989 40210269 -136763871 + MSTB1 LTR MaLR 36 312 -120 196 0 118 0 chrX 40210269 40210303 -136763837 + T-rich Low_complexity Low_complexity 3 40 0 1753 136 21 21 chrX 40210303 40210583 -136763557 - AluJo SINE Alu -32 280 1 1751 155 81 71 chrX 40210583 40210694 -136763446 + MSTB1 LTR MaLR 311 432 0 1559 177 0 23 chrX 40210695 40210960 -136763180 + Tigger7 DNA MER2_type 9 267 -466 628 180 0 0 chrX 40210957 40211057 -136763083 + Tigger7 DNA MER2_type 2488 2587 0 * 569 192 42 0 chrX 40211057 40211177 -136762963 - L1ME1 LINE L1 -878 5268 5144 2350 97 10 10 chrX 40211268 40211577 -136762563 + AluSp SINE Alu 1 309 -4 1219 209 69 69 chrX 40211579 40211620 -136762520 - MLT1L LTR MaLR -58 557 517 1407 145 44 4 chrX 40211620 40211847 -136762293 - MER46A DNA MER2_type 0 236 1 1219 209 69 69 chrX 40211847 40212183 -136761957 - MLT1L LTR MaLR -97 518 180 988 183 18 0 chrX 40212197 40212366 -136761774 + MER58 DNA MER1_type 1 172 -2248 295 202 34 79 chrX 40212368 40212457 -136761683 - MSTB LTR MaLR -159 273 189 575 97 9 35 chrX 40212457 40212570 -136761570 + (TTCC)n Simple_repeat Simple_repeat 4 113 0 2018 124 30 7 chrX 40212585 40212884 -136761256 - AluSx SINE Alu -6 306 1 712 248 13 0 chrX 40212885 40213038 -136761102 - MSTB LTR MaLR -227 199 45 1599 123 0 0 chrX 40213038 40213257 -136760883 + AluSx SINE Alu 1 219 -93 668 174 0 9 chrX 40213292 40213401 -136760739 + Tigger3(Golem) DNA MER2_type 1 108 -2921 6778 64 20 0 chrX 40413411 40414509 -136559631 - L1PA7 LINE L1 0 6154 5051 1026 121 15 65 chrX 40414610 40414809 -136559331 - LTR1B LTR ERV1 -637 189 1 306 261 128 71 chrX 40414859 40415070 -136559070 + L1MC3 LINE L1 1064 1286 -5130 403 118 47 24 chrX 40415348 40415433 -136558707 - L1MB4 LINE L1 -3 6177 6091 2299 106 0 6 chrX 40415990 40416301 -136557839 - AluSx SINE Alu -3 309 1 2408 75 0 3 chrX 40416616 40416921 -136557219 + AluY SINE Alu 1 304 -7 982 141 50 15 chrX 40417311 40417510 -136556630 - MLT1B LTR MaLR -1 389 184 241 271 14 29 chrX 40417596 40417666 -136556474 - MER5B DNA MER1_type -32 146 78 21 36 0 0 chrX 40417686 40417714 -136556426 + AT_rich Low_complexity Low_complexity 1 28 0 225 65 0 0 chrX 40417761 40417792 -136556348 + Alu SINE Alu 2 32 -270 299 223 123 15 chrX 40417907 40418037 -136556103 + L1MC3 LINE L1 2132 2275 -4151 1582 268 42 71 chrX 40418076 40418935 -136555205 + L1MC3 LINE L1 4462 5257 -1444 2237 100 0 13 chrX 40418935 40419245 -136554895 + AluSg SINE Alu 1 306 -4 1582 268 42 71 chrX 40419245 40419922 -136554218 + L1MC3 LINE L1 5257 5952 -749 258 191 15 15 chrX 40419924 40419992 -136554148 - MER92B LTR ERV1 0 636 569 257 175 0 35 chrX 40420018 40420075 -136554065 + L1MC3 LINE L1 6280 6335 -290 403 216 36 36 chrX 40420077 40420216 -136553924 + MLT1A2 LTR MaLR 2 140 -234 574 205 72 6 chrX 40420347 40420513 -136553627 + LTR1B LTR ERV1 650 826 0 434 290 95 12 chrX 40421187 40421356 -136552784 + MIR SINE MIR 78 260 -2 534 262 148 5 chrX 40421743 40421956 -136552184 - MER45C DNA AcHobo -8 945 703 1090 260 64 14 chrX 40421960 40422321 -136551819 - MER45C DNA AcHobo -574 379 1 223 143 171 14 chrX 40422322 40422392 -136551748 + MIR SINE MIR 68 148 -114 198 103 0 0 chrX 40422395 40422424 -136551716 + (A)n Simple_repeat Simple_repeat 1 29 0 1137 208 50 36 chrX 40422459 40423009 -136551131 + LTR27 LTR ERV1 1 634 -2 2707 119 39 30 chrX 40423082 40423681 -136550459 + MER4E LTR ERV1 1 779 0 4180 147 53 42 chrX 40423681 40424408 -136549732 + MER4E-int LTR ERV1 1 719 -1067 2211 116 0 0 chrX 40424408 40424700 -136549440 - AluSx SINE Alu -20 292 1 4180 147 53 42 chrX 40424700 40425067 -136549073 + MER4E-int LTR ERV1 719 1360 -426 186 43 0 0 chrX 40425067 40425090 -136549050 + (TG)n Simple_repeat Simple_repeat 2 24 0 4180 147 53 42 chrX 40425090 40425113 -136549027 + MER4E-int LTR ERV1 1360 1381 -405 255 171 24 37 chrX 40425093 40425175 -136548965 + MER4B-int LTR ERV1 580 660 -4355 * 7915 122 61 41 chrX 40425181 40425441 -136548699 + MER4B-int LTR ERV1 1346 1599 -5159 438 19 0 0 chrX 40425441 40425495 -136548645 + L1PA3 LINE L1 6099 6152 -3 7915 122 61 41 chrX 40425495 40425872 -136548268 + MER4B-int LTR ERV1 1599 1967 -4791 1924 156 0 13 chrX 40425872 40426173 -136547967 + AluSx SINE Alu 1 297 -15 7915 122 61 41 chrX 40426173 40426342 -136547798 + MER4B-int LTR ERV1 1967 2131 -4627 2399 81 3 7 chrX 40426342 40426652 -136547488 - AluSg1 SINE Alu 0 309 1 7915 122 61 41 chrX 40426652 40428269 -136545871 + MER4B-int LTR ERV1 2131 3003 -3755 2340 76 3 7 chrX 40428269 40428570 -136545570 + AluSc SINE Alu 10 309 0 7915 122 61 41 chrX 40428570 40428665 -136545475 + MER4B-int LTR ERV1 3003 3095 -3663 4090 116 33 29 chrX 40428651 40429316 -136544824 + MER4B-int LTR ERV1 3421 4088 -2670 * 12011 100 27 4 chrX 40429315 40431119 -136543021 + MER4B-int LTR ERV1 4452 6295 -463 336 219 0 0 chrX 40434349 40434413 -136539727 + MER6B DNA MER2_type 11 74 -202 581 200 0 8 chrX 40434560 40434680 -136539460 + MER6B DNA MER2_type 92 210 0 966 151 6 19 chrX 40434752 40434911 -136539229 - AluJb SINE Alu -19 293 137 414 0 0 0 chrX 40437193 40437239 -136536901 + (TG)n Simple_repeat Simple_repeat 2 47 0 1723 107 9 0 chrX 40438238 40438471 -136535669 - AluSq SINE Alu -14 299 65 230 318 20 81 chrX 40439384 40439532 -136534608 + MIR SINE MIR 92 230 -32 344 246 170 28 chrX 40439791 40440095 -136534045 + MLT1J LTR MaLR 110 526 -89 390 313 38 23 chrX 40440137 40440268 -136533872 - MER5B DNA MER1_type -5 173 41 1222 232 38 51 chrX 40440323 40440530 -136533610 - L1MC5 LINE L1 -106 7855 7647 1883 143 7 7 chrX 40440530 40440817 -136533323 + AluJb SINE Alu 1 287 -25 1222 232 38 51 chrX 40440817 40441139 -136533001 - L1MC5 LINE L1 -314 7647 7333 1249 279 117 50 chrX 40441167 40442728 -136531412 - L1MC5 LINE L1 -733 7228 5545 268 204 140 32 chrX 40442897 40442990 -136531150 + L2 LINE L2 3168 3270 -2 383 316 155 11 chrX 40443104 40443382 -136530758 - L2 LINE L2 0 3313 2996 253 129 0 97 chrX 40443569 40443631 -136530509 - AluSp SINE Alu -116 187 132 538 310 77 38 chrX 40443799 40444521 -136529619 + L1MC/D LINE L1 2393 3223 -2923 394 314 78 33 chrX 40444601 40444907 -136529233 + L1MC/D LINE L1 3256 3575 -2571 723 273 71 66 chrX 40444941 40445291 -136528849 + L1MC/D LINE L1 3586 3933 -2278 213 94 0 0 chrX 40445291 40445323 -136528817 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 723 273 71 66 chrX 40445323 40446839 -136527301 + L1MC/D LINE L1 3933 5463 -748 954 152 6 12 chrX 40448502 40448673 -136525467 + MER2 DNA MER2_type 1 170 -175 265 164 0 55 chrX 40448777 40448832 -136525308 + MER2 DNA MER2_type 294 345 0 927 241 94 67 chrX 40449326 40450238 -136523902 + L1MC5 LINE L1 6889 7825 -136 1580 110 0 47 chrX 40450239 40450475 -136523665 + AluSg SINE Alu 1 225 -85 291 125 0 0 chrX 40450575 40450623 -136523517 + Alu SINE Alu 254 301 -1 5379 93 42 39 chrX 40450630 40450986 -136523154 + Tigger3b DNA MER2_type 268 621 -2407 2254 95 7 0 chrX 40450986 40451282 -136522858 - AluSp SINE Alu -15 298 1 5379 93 42 39 chrX 40451282 40451572 -136522568 + Tigger3b DNA MER2_type 621 909 -2119 2268 105 0 3 chrX 40451572 40451876 -136522264 - AluSq SINE Alu -10 303 1 5379 93 42 39 chrX 40451876 40452182 -136521958 + Tigger3b DNA MER2_type 909 1224 -7 4274 188 33 7 chrX 40452329 40453186 -136520954 + HERVL74 LTR ERVL 1217 2095 -3590 4699 216 20 30 chrX 40453343 40454582 -136519558 + HERVL74 LTR ERVL 2100 3556 0 1315 209 70 21 chrX 40454585 40454968 -136519172 + LTR52 LTR ERVL 8 409 -12 8220 216 51 73 chrX 40454970 40456077 -136518063 - L1M3 LINE L1 -730 6261 5131 2551 121 5 27 chrX 40456077 40456515 -136517625 - L1MA6 LINE L1 0 6300 5873 8220 216 51 73 chrX 40456515 40456870 -136517270 - L1M3 LINE L1 -1860 5131 4770 1986 122 4 0 chrX 40456870 40457149 -136516991 - AluJb SINE Alu -30 282 3 8220 216 51 73 chrX 40457149 40459451 -136514689 - L1M3 LINE L1 -2221 4770 2581 1615 238 36 30 chrX 40459526 40460157 -136513983 - L1M3 LINE L1 -4543 2416 1782 264 30 0 0 chrX 40460166 40460199 -136513941 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 282 24 0 chrX 40460199 40460284 -136513856 - L1MC4 LINE L1 -1341 6701 6615 310 294 0 22 chrX 40460203 40460295 -136513845 + L1MC4 LINE L1 6614 6703 -1339 * 351 0 0 0 chrX 40460324 40460363 -136513777 + (TG)n Simple_repeat Simple_repeat 2 40 0 370 244 61 9 chrX 40460367 40460482 -136513658 - L1M3 LINE L1 -5088 1767 1647 1024 222 23 30 chrX 40460486 40460788 -136513352 - LTR55 LTR ERV -2 546 247 881 117 29 18 chrX 40460788 40460959 -136513181 - LTR54 LTR ERV1 0 510 338 1745 245 159 0 chrX 40460959 40461474 -136512666 - L1M3 LINE L1 -5625 1230 634 396 226 199 33 chrX 40461549 40461730 -136512410 - L1M3 LINE L1 -6636 223 13 872 210 38 30 chrX 40461740 40462002 -136512138 - L1M4 LINE L1 -1038 5108 4845 3027 169 27 22 chrX 40462006 40462605 -136511535 + L1MC1 LINE L1 5304 5905 -428 833 148 28 0 chrX 40462605 40462747 -136511393 + AluSg/x SINE Alu 163 308 -4 2586 148 5 9 chrX 40462747 40463185 -136510955 + L1MC1 LINE L1 5893 6328 -5 780 277 15 7 chrX 40463275 40463549 -136510591 - L1M4 LINE L1 -1286 4860 4585 612 268 88 19 chrX 40463567 40463978 -136510162 - L1MEc LINE L1 -4271 2474 2036 408 209 36 36 chrX 40464032 40464171 -136509969 - L1MEc LINE L1 -5901 144 6 758 223 42 24 chrX 40464196 40464483 -136509657 - MER33 DNA MER1_type -31 293 2 222 333 76 28 chrX 40464489 40464738 -136509402 - L2 LINE L2 -1134 2180 1920 261 163 0 0 chrX 40464766 40464815 -136509325 + (TG)n Simple_repeat Simple_repeat 1 49 0 257 262 75 16 chrX 40464826 40465013 -136509127 + L1ME3A LINE L1 4860 5057 -1089 651 294 109 49 chrX 40465050 40465709 -136508431 + L1ME3A LINE L1 5262 5960 -210 2220 87 11 0 chrX 40466316 40466618 -136507522 - AluSc SINE Alu 0 305 1 1954 125 6 45 chrX 40466779 40467091 -136507049 - AluSx SINE Alu -12 300 1 1359 187 12 4 chrX 40467093 40467344 -136506796 - Tigger3(Golem) DNA MER2_type -2776 253 1 1082 257 167 60 chrX 40467366 40468239 -136505901 - LTR52-int LTR ERVL -2587 969 3 1667 188 42 72 chrX 40468240 40468617 -136505523 - LTR52 LTR ERVL -2 419 55 2310 100 3 0 chrX 40468617 40468918 -136505222 + AluSp SINE Alu 1 302 -11 1667 188 42 72 chrX 40468918 40468972 -136505168 - LTR52 LTR ERVL -366 55 1 2772 152 22 29 chrX 40468973 40469525 -136504615 + L1MB7 LINE L1 5452 5999 -185 243 0 0 0 chrX 40469735 40469762 -136504378 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 309 0 0 0 chrX 40469762 40469799 -136504341 - L1PA4 LINE L1 -8 6147 6111 210 319 7 92 chrX 40469801 40469942 -136504198 + L2 LINE L2 3023 3151 -121 215 377 49 16 chrX 40470264 40470447 -136503693 + L2 LINE L2 207 395 -2919 328 320 40 32 chrX 40471348 40471473 -136502667 + L2 LINE L2 3145 3270 -2 1109 222 47 68 chrX 40471606 40472192 -136501948 + L1MC5 LINE L1 6684 7255 -728 541 261 71 74 chrX 40472293 40472522 -136501618 + L1MC5 LINE L1 7260 7488 -473 2253 59 0 14 chrX 40472522 40472837 -136501303 + AluY SINE Alu 1 311 0 541 261 71 74 chrX 40472837 40473220 -136500920 + L1MC5 LINE L1 7488 7873 -88 1981 147 0 0 chrX 40473220 40473513 -136500627 - AluJo SINE Alu -19 293 1 541 261 71 74 chrX 40473513 40473548 -136500592 + L1MC5 LINE L1 7873 7907 -54 276 261 15 46 chrX 40473565 40473695 -136500445 + L1MC4a LINE L1 6850 6975 -833 291 271 42 0 chrX 40473805 40473949 -136500191 + L1MC5 LINE L1 7611 7760 -201 1895 251 100 32 chrX 40473949 40474853 -136499287 + L1ME3A LINE L1 4561 5402 -768 2350 84 0 3 chrX 40474853 40475149 -136498991 + AluSg SINE Alu 1 295 -15 1895 251 100 32 chrX 40475149 40475668 -136498472 + L1ME3A LINE L1 5402 6092 -78 2416 81 3 0 chrX 40475668 40475977 -136498163 + AluSg SINE Alu 1 310 0 1895 251 100 32 chrX 40475977 40476044 -136498096 + L1ME3A LINE L1 6092 6153 -17 462 101 0 0 chrX 40476097 40476166 -136497974 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 255 225 75 33 chrX 40476181 40476301 -136497839 + L1MC4 LINE L1 7914 8038 -4 23 54 0 0 chrX 40476432 40476469 -136497671 + AT_rich Low_complexity Low_complexity 1 37 0 231 293 47 28 chrX 40476534 40476640 -136497500 + MIR SINE MIR 79 186 -76 718 263 43 109 chrX 40477055 40477431 -136496709 + L2 LINE L2 2963 3313 0 248 304 14 0 chrX 40479604 40479673 -136494467 - L2 LINE L2 -1 3271 3202 199 260 20 0 chrX 40479722 40479772 -136494368 + L2 LINE L2 3222 3272 0 1490 190 32 88 chrX 40479870 40479993 -136494147 - L1MEc LINE L1 -3143 3003 2875 2073 138 3 7 chrX 40479993 40480283 -136493857 - AluJo SINE Alu -14 298 10 1490 190 32 88 chrX 40480283 40480716 -136493424 - L1MEc LINE L1 -3271 2875 2478 1731 101 61 3 chrX 40480716 40481013 -136493127 + HSMAR2 DNA Mariner 2 315 -987 712 156 0 0 chrX 40481017 40481126 -136493014 - AluSq/x SINE Alu -180 133 25 864 148 0 0 chrX 40481127 40481255 -136492885 + AluSg/x SINE Alu 147 274 -36 519 60 0 0 chrX 40481261 40481328 -136492812 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 6285 114 19 11 chrX 40481339 40481386 -136492754 + HSMAR2 DNA Mariner 299 344 -958 1793 162 0 59 chrX 40481386 40481707 -136492433 + AluJb SINE Alu 1 302 -10 6285 114 19 11 chrX 40481707 40482471 -136491669 + HSMAR2 DNA Mariner 344 1122 -180 207 0 0 0 chrX 40482471 40482494 -136491646 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6285 114 19 11 chrX 40482494 40482677 -136491463 + HSMAR2 DNA Mariner 1122 1302 0 645 231 21 54 chrX 40482677 40482835 -136491305 - L1MEc LINE L1 -3666 2480 2318 249 33 0 0 chrX 40482835 40482865 -136491275 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 1721 151 7 21 chrX 40482867 40483152 -136490988 - AluJo SINE Alu -31 281 1 645 231 21 54 chrX 40483152 40483238 -136490902 - L1MEc LINE L1 -3829 2317 2265 5288 208 21 9 chrX 40483594 40484708 -136489432 + L1M4b LINE L1 11 1138 -5721 1854 278 48 14 chrX 40484718 40485546 -136488594 + L1M4b LINE L1 1379 2372 -4766 1807 159 0 36 chrX 40485546 40485855 -136488285 + AluJo SINE Alu 8 305 -7 1854 278 48 14 chrX 40485855 40485966 -136488174 + L1M4b LINE L1 2372 2478 -4660 331 326 7 21 chrX 40486312 40486456 -136487684 + L1M4b LINE L1 2586 2727 -4411 387 215 104 15 chrX 40486927 40487062 -136487078 + L1ME3 LINE L1 6016 6162 0 3967 261 73 22 chrX 40487072 40488467 -136485673 + L1MEc LINE L1 39 1538 -4858 2349 94 13 0 chrX 40488467 40488775 -136485365 - AluSx SINE Alu 0 312 1 3967 261 73 22 chrX 40488775 40489069 -136485071 + L1MEc LINE L1 1538 1815 -4581 2955 235 44 30 chrX 40489116 40489198 -136484942 + L1M4b LINE L1 2808 2887 -4070 2189 107 10 3 chrX 40489198 40489506 -136484634 + AluSp SINE Alu 1 310 -3 2955 235 44 30 chrX 40489506 40489873 -136484267 + L1M4b LINE L1 2887 3248 -3709 2440 81 0 0 chrX 40489873 40490171 -136483969 + AluSq SINE Alu 1 298 -15 2955 235 44 30 chrX 40490171 40490679 -136483461 + L1M4b LINE L1 3248 3748 -3209 1984 86 61 7 chrX 40490679 40490958 -136483182 + AluSc SINE Alu 1 294 -15 2955 235 44 30 chrX 40490958 40491307 -136482833 + L1M4b LINE L1 3748 4091 -2866 2182 105 0 10 chrX 40491329 40491625 -136482515 + AluSc SINE Alu 7 299 -10 477 267 41 51 chrX 40491668 40491863 -136482277 - Charlie8 DNA MER1_type -2199 218 26 863 152 61 18 chrX 40492046 40492211 -136481929 - MER5B DNA MER1_type 0 178 7 192 331 150 16 chrX 40492419 40492546 -136481594 - L2 LINE L2 -4 3268 3125 2302 95 3 10 chrX 40493058 40493364 -136480776 + AluSp SINE Alu 1 304 -9 663 315 31 22 chrX 40493573 40493795 -136480345 - MIR SINE MIR -22 240 17 2180 254 88 18 chrX 40494572 40495387 -136478753 + L1MDa LINE L1 34 1039 -5501 2104 107 0 0 chrX 40495397 40495677 -136478463 + AluSg SINE Alu 14 293 -17 1592 190 60 35 chrX 40495677 40496130 -136478010 + L1MDa LINE L1 1135 1602 -4938 2501 199 30 42 chrX 40496134 40496826 -136477314 + L1MDa LINE L1 1726 2409 -4131 1351 286 55 25 chrX 40496863 40497352 -136476788 + L1MDb LINE L1 31 534 -5875 464 192 59 18 chrX 40497354 40497615 -136476525 + L1MDb LINE L1 1057 1372 -5037 312 200 30 10 chrX 40497618 40497718 -136476422 + L1MDb LINE L1 2484 2585 -3821 * 1392 241 39 32 chrX 40497698 40498203 -136475937 + L1MDb LINE L1 3447 3959 -2447 1866 159 3 3 chrX 40498203 40498509 -136475631 - AluJb SINE Alu 0 306 1 1392 241 39 32 chrX 40498509 40498619 -136475521 + L1MDb LINE L1 3959 4067 -2339 23 0 0 0 chrX 40498679 40498702 -136475438 + AT_rich Low_complexity Low_complexity 1 23 0 251 230 0 81 chrX 40498783 40498857 -136475283 + L2 LINE L2 3246 3313 0 259 315 15 69 chrX 40498914 40499044 -136475096 + MIR SINE MIR 11 133 -129 575 332 21 35 chrX 40499125 40499465 -136474675 - MLT1I LTR MaLR -4 405 71 365 234 21 11 chrX 40499560 40499654 -136474486 + L2 LINE L2 2476 2570 -744 317 81 161 0 chrX 40499731 40499793 -136474347 - MLT2B1 LTR ERVL 0 520 449 1240 183 0 4 chrX 40499793 40500033 -136474107 - Tigger5 DNA MER2_type 0 2323 2085 799 190 0 7 chrX 40500023 40500165 -136473975 - Tigger5 DNA MER2_type -2085 238 98 * 1573 165 32 29 chrX 40500165 40500444 -136473696 - AluJo SINE Alu -26 286 7 688 273 43 51 chrX 40500568 40500824 -136473316 + L2 LINE L2 2561 2814 -500 369 323 75 57 chrX 40500850 40501132 -136473008 + L2 LINE L2 3017 3303 -10 254 246 262 16 chrX 40501135 40501257 -136472883 + L2 LINE L2 3162 3313 0 659 366 32 42 chrX 40501263 40501640 -136472500 - L2 LINE L2 -22 3250 2878 636 278 12 0 chrX 40501646 40501815 -136472325 - MER90 LTR ERV1 0 614 444 358 313 0 9 chrX 40501819 40501931 -136472209 - MER90 LTR ERV1 -486 128 18 988 277 42 37 chrX 40502153 40502611 -136471529 - LTR40c LTR ERVL -5 460 1 2571 112 55 32 chrX 40503540 40504132 -136470008 - MER4E LTR ERV1 0 779 1 2224 109 18 39 chrX 40504132 40504183 -136469957 - MER4E-int LTR ERV1 0 6758 6707 204 40 0 0 chrX 40504183 40504208 -136469932 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2224 109 18 39 chrX 40504208 40504540 -136469600 - MER4E-int LTR ERV1 -51 6707 6383 2363 91 0 26 chrX 40505449 40505756 -136468384 - AluSq SINE Alu -14 299 1 268 214 48 87 chrX 40506653 40506779 -136467361 - L1ME3 LINE L1 -81 6081 5961 1428 230 35 85 chrX 40506863 40507640 -136466500 - L1MC5 LINE L1 -430 7531 6794 705 319 39 0 chrX 40507867 40508096 -136466044 - MIR SINE MIR -2 260 23 243 0 0 0 chrX 40509069 40509096 -136465044 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 221 333 18 35 chrX 40509197 40509311 -136464829 + MIR SINE MIR 23 134 -128 2427 116 19 16 chrX 40509573 40509936 -136464204 - THE1B LTR MaLR 0 364 1 561 219 18 7 chrX 40509940 40510084 -136464056 + MLT1A1 LTR MaLR 248 365 0 814 104 55 77 chrX 40510962 40510990 -136463150 + L1MA8 LINE L1 6112 6139 -152 2343 100 3 0 chrX 40510990 40511291 -136462849 + AluSx SINE Alu 1 302 -10 814 104 55 77 chrX 40511291 40511445 -136462695 + L1MA8 LINE L1 6139 6290 -1 1229 265 58 48 chrX 40511467 40512347 -136461793 + L1MC5 LINE L1 6989 7877 -84 287 344 80 16 chrX 40512399 40512524 -136461616 + MER5B DNA MER1_type 46 178 0 276 229 0 0 chrX 40512789 40512850 -136461290 - MLT1J LTR MaLR -340 171 111 214 343 60 30 chrX 40513089 40513223 -136460917 - MIR SINE MIR -17 245 108 1014 100 47 79 chrX 40513725 40513915 -136460225 - MSTB2 LTR MaLR 0 457 274 2163 128 0 3 chrX 40514374 40514686 -136459454 - AluSx SINE Alu -1 311 1 1929 193 141 75 chrX 40515133 40515901 -136458239 - LTR1B LTR ERV1 -8 818 1 261 311 22 11 chrX 40515928 40516018 -136458122 + L1MDb LINE L1 180 270 -6139 2117 259 38 39 chrX 40516269 40517010 -136457130 + L1MDb LINE L1 681 1420 -4989 1198 225 37 90 chrX 40517066 40517523 -136456617 + L1MC/D LINE L1 1 433 -5612 3526 124 32 0 chrX 40517533 40517940 -136456200 + MER41A LTR ERV1 7 436 -118 1984 122 36 16 chrX 40517940 40518243 -136455897 - AluSq SINE Alu -2 311 3 3526 124 32 0 chrX 40518243 40518366 -136455774 + MER41A LTR ERV1 436 554 0 302 252 54 54 chrX 40518368 40518515 -136455625 + L1MC/D LINE L1 436 582 -5463 2172 130 0 16 chrX 40518515 40518831 -136455309 + AluJb SINE Alu 1 311 -1 839 256 54 19 chrX 40518842 40519158 -136454982 + L1MC/D LINE L1 552 878 -5167 1003 168 23 113 chrX 40519232 40519287 -136454853 + L1MC/D LINE L1 2344 2402 -4162 1416 113 24 5 chrX 40519287 40519500 -136454640 + L1MA3 LINE L1 6084 6300 -5 1003 168 23 113 chrX 40519500 40519753 -136454387 + L1MC/D LINE L1 2402 2624 -3940 2246 73 3 27 chrX 40519765 40520065 -136454075 - AluSg SINE Alu -17 293 1 2126 96 44 10 chrX 40520524 40520817 -136453323 + AluSg1 SINE Alu 1 303 -6 790 275 104 78 chrX 40521125 40521416 -136452724 + L1MC/D LINE L1 3333 3615 -2949 1720 168 9 35 chrX 40521416 40521731 -136452409 + AluSx SINE Alu 1 307 -5 790 275 104 78 chrX 40521731 40522274 -136451866 + L1MC/D LINE L1 3615 4200 -2364 2480 150 41 7 chrX 40522274 40522687 -136451453 + MSTA LTR MaLR 1 427 -1 790 275 104 78 chrX 40522687 40522865 -136451275 + L1MC/D LINE L1 4200 4372 -2192 1258 244 96 15 chrX 40523178 40523575 -136450565 - MLT1J1 LTR MaLR -12 434 6 1068 303 35 26 chrX 40523590 40524052 -136450088 + L1MC/D LINE L1 5760 6225 -2001 468 280 97 19 chrX 40524081 40524288 -136449852 + MIR SINE MIR 31 253 -9 2412 87 10 0 chrX 40524326 40524636 -136449504 - AluSp SINE Alu 0 313 1 203 152 0 0 chrX 40524922 40524955 -136449185 + A-rich Low_complexity Low_complexity 3 35 0 510 296 7 0 chrX 40525082 40525224 -136448916 - MER45C DNA AcHobo -108 845 703 1148 258 69 17 chrX 40525228 40525588 -136448552 - MER45C DNA AcHobo -574 379 1 414 257 115 20 chrX 40525588 40525736 -136448404 + MIR SINE MIR 67 228 -34 302 136 0 0 chrX 40525769 40525813 -136448327 + MER4B LTR ERV1 1 44 -566 1461 291 58 60 chrX 40525821 40526754 -136447386 + L1M4 LINE L1 183 1113 -5429 614 327 68 56 chrX 40526777 40527545 -136446595 - L2 LINE L2 -1309 2005 1229 373 228 56 99 chrX 40528443 40528605 -136445535 - MIR SINE MIR -78 184 30 183 276 124 38 chrX 40528790 40528895 -136445245 - MIR SINE MIR -36 226 113 3730 218 85 43 chrX 40529088 40530319 -136443821 - L1MB8 LINE L1 -11 6167 4889 2485 166 14 47 chrX 40530319 40530832 -136443308 - L1MA8 LINE L1 0 6291 5796 236 352 50 11 chrX 40530884 40531063 -136443077 - L1MEc LINE L1 -6166 230 45 276 191 0 0 chrX 40531931 40531986 -136442154 - MIR SINE MIR -65 143 94 209 385 28 7 chrX 40532892 40533035 -136441105 + MIR SINE MIR 67 212 -50 1719 144 14 17 chrX 40533105 40533397 -136440743 + AluJb SINE Alu 17 307 -5 202 271 0 0 chrX 40533779 40533827 -136440313 + L2 LINE L2 3224 3271 -1 1368 276 116 87 chrX 40534252 40534828 -136439312 + MLT1G LTR MaLR 1 588 -2 319 303 49 33 chrX 40535119 40535241 -136438899 - MIR SINE MIR -132 130 7 309 357 42 0 chrX 40537442 40537585 -136436555 - L1MDb LINE L1 -3713 2502 2354 2705 274 60 31 chrX 40537627 40538776 -136435364 - L1MDb LINE L1 -3897 2318 1087 1918 116 74 0 chrX 40538776 40539061 -136435079 - AluSg SINE Alu -4 306 1 2705 274 60 31 chrX 40539061 40539647 -136434493 - L1MDb LINE L1 -5128 1087 519 1064 171 5 42 chrX 40539650 40539867 -136434273 - L1MC3 LINE L1 -172 7613 7405 324 70 0 0 chrX 40539867 40539910 -136434230 + (T)n Simple_repeat Simple_repeat 1 43 0 850 155 7 7 chrX 40539925 40539984 -136434156 - AluJb SINE Alu -130 182 124 495 0 0 0 chrX 40539984 40540039 -136434101 + (TG)n Simple_repeat Simple_repeat 2 56 0 850 155 7 7 chrX 40540039 40540121 -136434019 - AluJb SINE Alu -187 125 41 3049 240 12 31 chrX 40540121 40540954 -136433186 - L1MC3 LINE L1 -369 7416 6600 1377 138 45 16 chrX 40541140 40541386 -136432754 - L1MA3 LINE L1 -160 6145 5893 1846 183 64 21 chrX 40542957 40543346 -136430794 + LTR52 LTR ERVL 3 408 -13 502 263 93 29 chrX 40543437 40543749 -136430391 - L1M4 LINE L1 -840 5306 4975 913 208 21 16 chrX 40543754 40543951 -136430189 - L1M4 LINE L1 -2452 3694 3493 2357 161 3 5 chrX 40543951 40544318 -136429822 - MER47A DNA MER2_type 0 366 1 913 208 21 16 chrX 40544318 40544380 -136429760 - L1M4 LINE L1 -2653 3493 3433 268 254 15 0 chrX 40544558 40544625 -136429515 - L1MDb LINE L1 -6054 342 275 2763 265 118 21 chrX 40544670 40545386 -136428754 - L1MEc LINE L1 -5156 1240 379 2299 70 0 17 chrX 40545386 40545685 -136428455 - AluY SINE Alu -16 295 2 2763 265 118 21 chrX 40545685 40546065 -136428075 - L1MEc LINE L1 -6017 379 37 235 291 33 103 chrX 40546091 40546304 -136427836 - L1M4 LINE L1 -1896 4250 4053 711 266 79 0 chrX 40546442 40546645 -136427495 - MIR SINE MIR -21 241 23 21 0 0 0 chrX 40547863 40547884 -136426256 + AT_rich Low_complexity Low_complexity 1 21 0 2283 183 60 20 chrX 40548716 40549219 -136424921 + Charlie1b DNA MER1_type 1 523 0 8205 28 0 0 chrX 40549249 40550792 -136423348 - L1PA3 LINE L1 -3 6152 4610 1699 166 0 30 chrX 40551511 40551807 -136422333 - AluJb SINE Alu -25 287 1 2303 210 28 28 chrX 40552021 40552526 -136421614 + MLT1D LTR MaLR 1 505 0 965 144 17 204 chrX 40552526 40552928 -136421212 + MLT1D-int LTR MaLR 1 327 -1044 396 164 0 0 chrX 40552997 40553052 -136421088 + MLT1D LTR MaLR 1 55 -450 1406 174 21 90 chrX 40553052 40553386 -136420754 + MLT1D-int LTR MaLR 333 643 -728 1955 210 30 155 chrX 40553445 40553764 -136420376 + MLT1D-int LTR MaLR 632 989 -382 2153 101 0 58 chrX 40553764 40554092 -136420048 + AluSc SINE Alu 1 309 0 1955 210 30 155 chrX 40554092 40554584 -136419556 + MLT1D-int LTR MaLR 989 1337 -34 2016 138 0 0 chrX 40554584 40554888 -136419252 - AluJb SINE Alu 0 304 1 1955 210 30 155 chrX 40554888 40554920 -136419220 + MLT1D-int LTR MaLR 1337 1371 0 2460 175 29 44 chrX 40554925 40555339 -136418801 + MLT1D LTR MaLR 6 501 -94 2773 105 63 19 chrX 40555339 40555749 -136418391 - MSTA LTR MaLR 0 428 1 2460 175 29 44 chrX 40555749 40555842 -136418298 + MLT1D LTR MaLR 501 594 -1 1699 112 59 40 chrX 40556251 40556587 -136417553 - MER61C LTR ERV1 0 434 1 610 265 131 30 chrX 40556641 40557160 -136416980 - L1ME LINE L1 -417 5733 5156 611 141 0 0 chrX 40557160 40557245 -136416895 - MER77 LTR ERV1 -14 591 507 1111 240 52 93 chrX 40557246 40557634 -136416506 - MER77 LTR ERV1 -233 372 1 207 167 0 0 chrX 40557687 40557729 -136416411 + T-rich Low_complexity Low_complexity 1 42 0 513 276 94 65 chrX 40557752 40558168 -136415972 - L1ME LINE L1 -1031 5098 4671 252 308 91 18 chrX 40558295 40558571 -136415569 - L1ME LINE L1 -1621 4508 4213 1992 112 47 4 chrX 40558755 40559033 -136415107 - AluSx SINE Alu -22 290 1 2333 106 0 3 chrX 40559429 40559741 -136414399 + AluSq SINE Alu 1 311 -2 313 263 88 51 chrX 40559888 40560025 -136414115 + MIR SINE MIR 13 154 -108 2193 209 82 29 chrX 40560198 40560719 -136413421 - MER44D DNA MER2_type -1 604 1 2339 161 88 31 chrX 40560752 40561230 -136412910 - MLT1D LTR MaLR 0 505 1 314 286 58 52 chrX 40561823 40562169 -136411971 - L1ME LINE L1 -5030 1089 742 403 286 9 9 chrX 40562692 40562797 -136411343 - MIR SINE MIR -110 152 48 499 295 78 41 chrX 40563314 40563558 -136410582 + MIR SINE MIR 10 262 0 948 268 113 36 chrX 40564057 40564205 -136409935 - L1ME4a LINE L1 -11 6110 5975 1977 103 25 150 chrX 40564205 40564439 -136409701 - MLT1B LTR MaLR 0 390 237 1579 91 0 0 chrX 40564439 40564638 -136409502 - AluSq SINE Alu -114 199 1 1977 103 25 150 chrX 40564638 40564849 -136409291 - MLT1B LTR MaLR -153 237 1 948 268 113 36 chrX 40564849 40565377 -136408763 - L1ME4a LINE L1 -146 5975 5320 492 304 75 19 chrX 40566884 40567098 -136407042 - MIR SINE MIR 0 262 37 483 295 86 30 chrX 40567852 40568062 -136406078 + MIR SINE MIR 40 259 -3 802 292 0 0 chrX 40568183 40568354 -136405786 - MER91B DNA MER1_type -2 188 18 1411 172 0 49 chrX 40568361 40568669 -136405471 + MLT1D LTR MaLR 3 295 -210 566 141 0 0 chrX 40568669 40568771 -136405369 + AluSg/x SINE Alu 203 304 0 2273 107 3 0 chrX 40568796 40569095 -136405045 + AluSx SINE Alu 1 300 -12 340 332 149 44 chrX 40569098 40569667 -136404473 - L2 LINE L2 -634 2680 2052 23 78 0 0 chrX 40570020 40570071 -136404069 + AT_rich Low_complexity Low_complexity 1 51 0 497 278 126 27 chrX 40570234 40570511 -136403629 - HAL1 LINE L1 -194 2313 1980 1768 117 16 8 chrX 40570511 40570759 -136403381 - AluSx SINE Alu -27 285 36 497 278 126 27 chrX 40570759 40570895 -136403245 - HAL1 LINE L1 -527 1980 1859 381 258 96 22 chrX 40570889 40571067 -136403073 - HAL1 LINE L1 -1042 1465 1275 * 456 260 77 0 chrX 40571067 40571171 -136402969 + L2 LINE L2 3198 3309 -4 6189 159 54 25 chrX 40571633 40572139 -136402001 - L1MA9 LINE L1 -2 6310 5820 219 69 0 0 chrX 40572139 40572168 -136401972 + (TG)n Simple_repeat Simple_repeat 2 30 0 6189 159 54 25 chrX 40572168 40573002 -136401138 - L1MA9 LINE L1 -492 5820 5011 234 0 0 0 chrX 40573002 40573028 -136401112 + (TG)n Simple_repeat Simple_repeat 2 27 0 6189 159 54 25 chrX 40573028 40574000 -136400140 - L1MA9 LINE L1 -1301 5011 3912 569 192 8 32 chrX 40574071 40574196 -136399944 + L2 LINE L2 3192 3313 0 308 337 23 58 chrX 40574263 40574524 -136399616 - HAL1 LINE L1 -1187 1320 1069 2273 124 132 5 chrX 40574542 40574922 -136399218 + MSTA LTR MaLR 1 428 0 3242 71 25 7 chrX 40576093 40576529 -136397611 - MLT2A1 LTR ERVL 0 444 1 243 61 0 0 chrX 40577077 40577110 -136397030 + (TG)n Simple_repeat Simple_repeat 1 33 0 394 187 33 33 chrX 40578224 40578315 -136395825 - THE1C LTR MaLR -2 426 336 857 132 5 100 chrX 40578358 40578400 -136395740 - AluJo/FRAM SINE Alu -6 306 262 1943 142 3 7 chrX 40578400 40578702 -136395438 + AluSx SINE Alu 2 302 -10 857 132 5 100 chrX 40578702 40578849 -136395291 - AluJo/FRAM SINE Alu -50 262 135 575 229 179 21 chrX 40578876 40579156 -136394984 + MER5C DNA MER1_type 1 324 0 489 140 54 21 chrX 40579529 40579622 -136394518 - U6 snRNA snRNA -11 96 1 21 0 0 0 chrX 40579990 40580011 -136394129 + AT_rich Low_complexity Low_complexity 1 21 0 7446 35 0 3 chrX 40580087 40581161 -136392979 - L1PA5 LINE L1 0 6154 5082 754 219 127 17 chrX 40581558 40581849 -136392291 + MER41B LTR ERV1 97 384 -94 27 0 0 0 chrX 40581858 40581885 -136392255 + AT_rich Low_complexity Low_complexity 1 27 0 1603 135 45 22 chrX 40581885 40582196 -136391944 - THE1C LTR MaLR -57 318 1 198 0 0 0 chrX 40582326 40582348 -136391792 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 234 0 0 0 chrX 40582347 40582373 -136391767 + (GA)n Simple_repeat Simple_repeat 1 26 0 294 287 24 84 chrX 40582508 40582675 -136391465 - MLT1J LTR MaLR -131 380 224 351 304 89 68 chrX 40582944 40583280 -136390860 - L2 LINE L2 -37 3276 2934 3060 241 54 42 chrX 40583313 40584394 -136389746 - L1MEc LINE L1 -5236 1160 67 261 0 0 0 chrX 40585573 40585602 -136388538 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4321 167 39 40 chrX 40686258 40687236 -136286904 - L1P LINE L1 -4880 1266 290 7127 46 0 2 chrX 40687368 40688350 -136285790 - L1P LINE L1 -3767 2379 1400 1918 149 55 3 chrX 40688882 40689244 -136284896 + MLT1B LTR MaLR 8 388 -2 1039 47 7 0 chrX 40689392 40689542 -136284598 + L1P2 LINE L1 5311 5461 -694 1272 126 10 5 chrX 40689941 40690140 -136284000 + AluSx SINE Alu 1 200 -112 22 35 0 0 chrX 40690140 40690169 -136283971 + AT_rich Low_complexity Low_complexity 1 29 0 231 190 7 102 chrX 40690332 40690469 -136283671 + C-rich Low_complexity Low_complexity 2 125 0 217 189 0 38 chrX 40690611 40690664 -136283476 + C-rich Low_complexity Low_complexity 3 53 0 429 298 33 56 chrX 40691266 40691468 -136282672 - L1ME3 LINE L1 0 6166 5963 1995 246 33 35 chrX 40691944 40692551 -136281589 - L1MEc LINE L1 -5749 647 42 297 242 30 45 chrX 40692555 40692687 -136281453 + LTR16B LTR ERVL 200 329 -135 214 143 0 36 chrX 40692888 40692944 -136281196 + (CCCCCT)n Simple_repeat Simple_repeat 2 55 0 251 324 0 28 chrX 40692945 40693053 -136281087 + CT-rich Low_complexity Low_complexity 2 106 0 * 344 320 0 33 chrX 40692992 40693197 -136280943 + C-rich Low_complexity Low_complexity 1 198 0 431 261 72 20 chrX 40693778 40694027 -136280113 + L1M4 LINE L1 4612 4873 -1273 1095 101 16 79 chrX 40696338 40696473 -136277667 + AluSx SINE Alu 2 123 -189 1893 136 3 23 chrX 40696473 40696781 -136277359 + AluSx SINE Alu 1 302 -10 1095 101 16 79 chrX 40696781 40696834 -136277306 + AluSx SINE Alu 123 178 -134 203 208 19 19 chrX 40696893 40696946 -136277194 + CT-rich Low_complexity Low_complexity 1 53 0 185 226 12 0 chrX 40696998 40697082 -136277058 + C-rich Low_complexity Low_complexity 3 87 0 1331 279 51 42 chrX 40697184 40697579 -136276561 + L1MEc LINE L1 1000 1390 -5006 2417 70 3 10 chrX 40697579 40697893 -136276247 - AluSp SINE Alu 0 313 2 1331 279 51 42 chrX 40697893 40698308 -136275832 + L1MEc LINE L1 1390 1817 -4579 225 219 0 0 chrX 40699966 40700039 -136274101 + G-rich Low_complexity Low_complexity 1 73 0 1655 21 0 0 chrX 40701293 40701479 -136272661 + L1PA3 LINE L1 5970 6155 0 596 193 67 1 chrX 40701481 40701631 -136272509 - L1MC3 LINE L1 -144 7678 7493 670 276 4 70 chrX 40701639 40701882 -136272258 + L2 LINE L2 3086 3312 -1 194 321 0 0 chrX 40702031 40702084 -136272056 + L2 LINE L2 2417 2469 -845 2215 85 20 0 chrX 40702962 40703268 -136270872 + AluSx SINE Alu 1 312 0 426 163 20 0 chrX 40703579 40703677 -136270463 + MER113 DNA MER1_type? 110 209 -312 210 379 98 21 chrX 40704156 40704391 -136269749 + L2 LINE L2 2934 3186 -86 1798 134 10 17 chrX 40704724 40705015 -136269125 - AluSx SINE Alu -9 303 15 1538 209 0 13 chrX 40705025 40705326 -136268814 - AluJb SINE Alu -15 297 1 253 175 18 18 chrX 40705414 40705471 -136268669 + MLT1I LTR MaLR 353 409 0 1798 133 207 13 chrX 40706019 40706396 -136267744 - LTR7 LTR ERV1 0 450 1 1870 132 43 0 chrX 40706410 40706736 -136267404 + LTR10A LTR ERV1 208 547 -62 489 134 24 0 chrX 40706755 40706837 -136267303 + Alu SINE Alu 228 311 0 1349 130 5 10 chrX 40706841 40707049 -136267091 + AluSx SINE Alu 1 207 -105 639 87 10 19 chrX 40707051 40707154 -136266986 - LTR7 LTR ERV1 0 450 349 1254 110 42 30 chrX 40707259 40707496 -136266644 + AluY SINE Alu 55 294 -17 1747 122 3 91 chrX 40707871 40708191 -136265949 - AluSx SINE Alu -20 292 1 309 131 0 0 chrX 40708193 40708254 -136265886 - AluSp/q SINE Alu 0 303 243 5950 79 2 2 chrX 40708358 40709277 -136264863 + L1P LINE L1 2334 3252 -2894 204 172 0 69 chrX 40709331 40709389 -136264751 + C-rich Low_complexity Low_complexity 3 56 0 184 283 19 0 chrX 40709963 40710016 -136264124 - MIR SINE MIR -98 164 111 327 241 18 9 chrX 40710650 40710762 -136263378 + G-rich Low_complexity Low_complexity 2 114 0 377 270 0 36 chrX 40710889 40711000 -136263140 + L2 LINE L2 2223 2329 -985 553 289 3 111 chrX 40711300 40711615 -136262525 + L2 LINE L2 2217 2497 -817 559 257 35 51 chrX 40711615 40711872 -136262268 - L1MEc LINE L1 -5984 412 160 340 323 0 0 chrX 40712009 40712139 -136262001 + C-rich Low_complexity Low_complexity 1 130 0 549 164 0 39 chrX 40713652 40713756 -136260384 - AluSc SINE Alu -72 237 138 1759 123 23 52 chrX 40713756 40714066 -136260074 - AluSq SINE Alu -12 301 1 1910 127 24 3 chrX 40715657 40715949 -136258191 + AluSx SINE Alu 1 298 -14 560 239 0 0 chrX 40715955 40716072 -136258068 + FLAM_C SINE Alu 3 119 -24 257 303 73 28 chrX 40716512 40716621 -136257519 - L2 LINE L2 -204 3068 2955 469 374 5 0 chrX 40716641 40716844 -136257296 + LTR16B LTR ERVL 9 212 -252 1649 214 77 8 chrX 40716845 40717365 -136256775 - L1MEc LINE L1 -4189 2207 1652 2040 103 7 40 chrX 40717465 40717765 -136256375 - AluSx SINE Alu -22 290 1 299 275 25 17 chrX 40718680 40718800 -136255340 - MER66-int LTR ERV1 -6339 337 217 2176 111 3 16 chrX 40718894 40719201 -136254939 - AluSc SINE Alu -6 303 1 976 124 0 28 chrX 40719202 40719347 -136254793 - FLAM_C SINE Alu -2 141 1 1056 184 31 65 chrX 40719347 40719768 -136254372 + MER66-int LTR ERV1 653 1114 -5562 1496 118 0 0 chrX 40719768 40719963 -136254177 - AluSc SINE Alu -17 292 98 1045 160 0 11 chrX 40720101 40720282 -136253858 + AluSg/x SINE Alu 114 292 -20 2273 86 7 0 chrX 40720289 40720581 -136253559 + AluY SINE Alu 1 294 -17 1651 144 28 21 chrX 40721842 40722133 -136252007 - AluSx SINE Alu -19 293 1 314 211 53 0 chrX 40722136 40722212 -136251928 - AluJ/FRAM SINE Alu 0 302 223 1391 174 20 8 chrX 40722454 40722707 -136251433 + 7SLRNA srpRNA srpRNA 1 256 -64 245 287 57 0 chrX 40724437 40724559 -136249581 + MER74B LTR ERVL 211 339 -283 2287 94 7 7 chrX 40724567 40724874 -136249266 - AluY SINE Alu -4 307 1 664 193 0 14 chrX 40724889 40725034 -136249106 - AluSq SINE Alu -31 282 140 350 333 0 0 chrX 40725042 40725204 -136248936 + C-rich Low_complexity Low_complexity 1 162 0 4211 126 7 5 chrX 40725304 40726428 -136247712 - L1MA2 LINE L1 -452 5852 4730 253 313 7 35 chrX 40726679 40726823 -136247317 + GA-rich Low_complexity Low_complexity 1 140 0 6709 52 4 2 chrX 40727333 40728165 -136245975 + L1PA2 LINE L1 5322 6154 -1 1740 185 0 0 chrX 40728165 40728484 -136245656 + L1M4 LINE L1 3979 4297 -1849 257 327 115 0 chrX 40729122 40729287 -136244853 + MIR SINE MIR 50 233 -29 256 26 77 0 chrX 40729320 40729359 -136244781 - L1MA6 LINE L1 -6 6294 6253 822 157 324 0 chrX 40730194 40730404 -136243736 + AluJb SINE Alu 18 295 -17 478 314 78 29 chrX 40730410 40730652 -136243488 + L1M4 LINE L1 4457 4710 -1436 758 224 0 8 chrX 40730655 40730789 -136243351 + FLAM_A SINE Alu 1 133 0 710 229 65 36 chrX 40731076 40731382 -136242758 + L1MC4 LINE L1 7728 8042 0 217 170 19 19 chrX 40731540 40731593 -136242547 + G-rich Low_complexity Low_complexity 6 58 0 303 130 39 13 chrX 40732683 40732760 -136241380 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 3243 210 42 16 chrX 40733068 40734035 -136240105 - L1ME1 LINE L1 -108 6058 5076 972 183 6 6 chrX 40734037 40734217 -136239923 - MLT1C LTR MaLR -2 465 286 420 20 0 0 chrX 40735389 40735438 -136238702 + (TAG)n Simple_repeat Simple_repeat 2 50 0 2501 97 24 11 chrX 40736380 40736760 -136237380 - LTR1 LTR ERV1 0 785 401 3117 81 27 7 chrX 40736761 40737206 -136236934 + MER11B LTR ERVK 1 454 -782 274 249 85 24 chrX 40737344 40737559 -136236581 + (TGAG)n Simple_repeat Simple_repeat 1 228 0 2217 91 7 3 chrX 40737640 40737937 -136236203 - AluY SINE Alu -10 301 4 1166 195 13 89 chrX 40737941 40738244 -136235896 - AluJb SINE Alu -12 300 21 352 280 21 0 chrX 40739523 40739616 -136234524 - L2 LINE L2 -1 3312 3218 874 191 72 29 chrX 40739711 40739988 -136234152 - L1MD3 LINE L1 0 7995 7707 709 297 19 19 chrX 40739986 40740242 -136233898 - L1MC4a LINE L1 -1048 6760 6505 * 1648 153 40 58 chrX 40742286 40742633 -136231507 + MSTA LTR MaLR 2 342 -86 3939 95 4 24 chrX 40742835 40743315 -136230825 + MER1A DNA MER1_type 4 473 -2227 2288 98 3 0 chrX 40743315 40743610 -136230530 + AluSg SINE Alu 1 296 -14 3939 95 4 24 chrX 40743610 40743664 -136230476 + MER1A DNA MER1_type 473 527 0 273 236 132 42 chrX 40743697 40743841 -136230299 + L1MCb LINE L1 214 370 -5675 10640 62 6 1 chrX 40747221 40748652 -136225488 + L1P LINE L1 803 2239 -3907 363 333 11 11 chrX 40749016 40749190 -136224950 + (TG)n Simple_repeat Simple_repeat 2 175 0 410 328 11 11 chrX 40749217 40749394 -136224746 + (TG)n Simple_repeat Simple_repeat 1 177 0 319 259 0 32 chrX 40749449 40749634 -136224506 + (TG)n Simple_repeat Simple_repeat 1 179 0 194 284 0 9 chrX 40749694 40749810 -136224330 + (TG)n Simple_repeat Simple_repeat 1 115 0 26 50 0 0 chrX 40750029 40750069 -136224071 + GC_rich Low_complexity Low_complexity 1 40 0 3031 161 6 7 chrX 40750227 40750768 -136223372 - L1P LINE L1 -5606 540 1 286 271 45 68 chrX 40751330 40751463 -136222677 + L2 LINE L2 3134 3263 -9 195 42 0 0 chrX 40751466 40751490 -136222650 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 278 215 168 19 chrX 40751713 40751820 -136222320 + MIR SINE MIR 84 206 -56 23 33 0 0 chrX 40751960 40751990 -136222150 + AT_rich Low_complexity Low_complexity 1 30 0 292 283 13 150 chrX 40752347 40752580 -136221560 - MIR SINE MIR -13 249 49 221 271 160 21 chrX 40752586 40752730 -136221410 + MIR SINE MIR 94 257 -5 240 266 18 9 chrX 40752914 40753023 -136221117 + L1ME3 LINE L1 5962 6071 -91 184 289 89 52 chrX 40753118 40753253 -136220887 + MIR SINE MIR 112 251 -11 766 273 28 52 chrX 40753447 40754019 -136220121 + L1ME LINE L1 5010 5569 -593 4947 41 0 0 chrX 40754051 40754688 -136219452 + L1P LINE L1 4767 5403 -743 3413 77 25 0 chrX 40755230 40755672 -136218468 - MLT2A2 LTR ERVL 0 453 1 1333 135 0 5 chrX 40756197 40756390 -136217750 + AluSg/x SINE Alu 100 291 -21 181 200 147 21 chrX 40756829 40756924 -136217216 + L2 LINE L2 3133 3239 -33 186 267 0 0 chrX 40758001 40758091 -136216049 + C-rich Low_complexity Low_complexity 1 90 0 469 262 33 31 chrX 40758421 40758827 -136215313 + (TGAG)n Simple_repeat Simple_repeat 1 407 0 204 278 28 56 chrX 40758842 40759022 -136215118 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 1805 213 47 9 chrX 40761582 40762033 -136212107 - MER110A LTR ERV1 0 468 1 279 0 0 0 chrX 40762141 40762172 -136211968 + (TG)n Simple_repeat Simple_repeat 2 32 0 1475 93 0 18 chrX 40762183 40762409 -136211731 - L1MA5 LINE L1 -11 6289 6068 1349 107 10 10 chrX 40763731 40763927 -136210213 - AluSq SINE Alu -117 196 1 7403 65 17 2 chrX 40764952 40766427 -136207713 - L1P LINE L1 -2545 3601 1927 399 259 59 7 chrX 40767017 40767152 -136206988 - L1ME4a LINE L1 -11 6110 5969 313 282 153 24 chrX 40767524 40767694 -136206446 - L1ME4a LINE L1 -135 5986 5795 311 281 106 19 chrX 40767820 40767980 -136206160 + MIR SINE MIR 88 261 -1 538 67 11 11 chrX 40769240 40769329 -136204811 + (CA)n Simple_repeat Simple_repeat 2 90 0 9584 54 1 4 chrX 40769745 40770976 -136203164 - L1P LINE L1 -4019 2127 901 3316 258 44 10 chrX 40771258 40772266 -136201874 + L1M4 LINE L1 3425 4466 -1680 668 172 0 47 chrX 40772375 40772503 -136201637 - AluSq/x SINE Alu -189 123 2 2368 57 0 3 chrX 40772517 40772813 -136201327 - AluY SINE Alu -16 295 1 1874 109 4 0 chrX 40772864 40773131 -136201009 - AluY SINE Alu -16 295 28 1767 125 50 0 chrX 40773352 40773632 -136200508 - AluSg SINE Alu -16 294 1 885 183 24 33 chrX 40773637 40773850 -136200290 - AluJo SINE Alu -16 296 86 348 344 32 85 chrX 40774048 40774423 -136199717 - L2 LINE L2 -52 3220 2866 282 189 0 0 chrX 40774596 40774649 -136199491 - L1MC4a LINE L1 -228 7580 7528 * 701 106 0 29 chrX 40774630 40774734 -136199406 - L1MC3 LINE L1 -989 6796 6696 6523 73 13 4 chrX 40776026 40777303 -136196837 - L1PA7 LINE L1 -15 6139 4870 195 42 0 0 chrX 40777592 40777616 -136196524 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 457 16 32 0 chrX 40777845 40777877 -136196263 + (TAGA)n Simple_repeat Simple_repeat 1 97 0 457 16 32 0 chrX 40777877 40777939 -136196201 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 874 142 19 0 chrX 40779234 40779389 -136194751 - AluSq SINE Alu -29 284 127 1923 123 10 0 chrX 40779458 40779760 -136194380 - AluSc SINE Alu -4 305 1 463 325 50 28 chrX 40780799 40781257 -136192883 + L1ME3A LINE L1 3176 3643 -2503 503 304 52 52 chrX 40781259 40781683 -136192457 + L1ME3A LINE L1 3663 4086 -2060 828 274 56 81 chrX 40781764 40782268 -136191872 + L1ME3A LINE L1 5657 6147 -23 516 16 0 0 chrX 40782704 40782765 -136191375 + (CA)n Simple_repeat Simple_repeat 1 61 0 891 134 0 0 chrX 40782887 40783036 -136191104 - L1MA9 LINE L1 -5 6307 6159 969 183 20 10 chrX 40783044 40783241 -136190899 - L1PA16 LINE L1 -23 6143 5945 598 209 22 30 chrX 40783243 40783377 -136190763 - FLAM_A SINE Alu 0 133 1 2737 158 25 16 chrX 40783378 40783758 -136190382 - L1MA9 LINE L1 -140 6172 5784 306 73 0 0 chrX 40783758 40783799 -136190341 + (TG)n Simple_repeat Simple_repeat 2 42 0 2737 158 25 16 chrX 40783799 40783930 -136190210 - L1MA9 LINE L1 -528 5784 5656 6728 69 11 17 chrX 40784031 40784906 -136189234 - Harlequin LTR ERV1 -2675 4221 3352 3907 43 2 6 chrX 40784905 40785435 -136188705 - Harlequin LTR ERV1 -4322 2574 2047 * 778 35 53 0 chrX 40785443 40785556 -136188584 + AluY SINE Alu 2 120 -191 1214 148 157 0 chrX 40785873 40786109 -136188031 - AluJb SINE Alu -19 293 21 5995 50 3 0 chrX 40786227 40786949 -136187191 + LTR5 LTR ERVK 1 724 -245 504 103 51 0 chrX 40787051 40787129 -136187011 - AluS SINE Alu -230 83 2 2006 104 3 10 chrX 40787136 40787309 -136186831 - AluSq SINE Alu -6 307 135 2388 44 7 3 chrX 40787309 40787605 -136186535 - AluY SINE Alu -14 297 1 2006 104 3 10 chrX 40787605 40787720 -136186420 - AluSq SINE Alu -178 135 21 832 221 6 0 chrX 40787857 40788015 -136186125 - AluJb SINE Alu -16 296 138 700 188 42 55 chrX 40788020 40788138 -136186002 + MER20 DNA MER1_type 57 174 -45 1384 186 24 20 chrX 40788138 40788433 -136185707 + AluJo SINE Alu 1 296 -16 700 188 42 55 chrX 40788433 40788479 -136185661 + MER20 DNA MER1_type 174 219 0 306 124 101 0 chrX 40788745 40788834 -136185306 + L1M LINE L1 5300 5397 -903 4840 191 35 44 chrX 40788843 40790383 -136183757 - MER52A LTR ERV1 0 1755 532 619 266 0 0 chrX 40790372 40790500 -136183640 - MER52A LTR ERV1 -1627 128 1 * 2369 131 16 0 chrX 40790501 40790875 -136183265 + L1M1 LINE L1 5406 5785 -515 3450 158 78 240 chrX 40791499 40792647 -136181493 + MER52A LTR ERV1 59 1105 -192 1782 139 17 0 chrX 40793789 40794076 -136180064 + AluSc SINE Alu 1 292 -17 290 196 18 0 chrX 40794293 40794349 -136179791 - MLT1I LTR MaLR 0 409 353 687 265 0 0 chrX 40794447 40794613 -136179527 + AluJb SINE Alu 9 174 -138 2346 183 8 55 chrX 40795015 40795545 -136178595 + L1MA10 LINE L1 5819 6323 -11 1040 248 100 22 chrX 40795566 40796054 -136178086 + L1M4 LINE L1 2415 2940 -3206 515 294 120 15 chrX 40796069 40796633 -136177507 + L1M4 LINE L1 3035 3660 -2486 249 290 46 15 chrX 40796634 40796765 -136177375 + L1M4 LINE L1 3816 3950 -2196 1677 216 59 11 chrX 40796829 40797023 -136177117 - L1MD3 LINE L1 -2 7993 7810 4435 136 19 6 chrX 40797023 40797721 -136176419 - MER39 LTR ERV1 0 707 1 1677 216 59 11 chrX 40797721 40797970 -136176170 - L1MD3 LINE L1 -185 7810 7529 369 223 32 21 chrX 40797975 40798069 -136176071 + MLT1F1 LTR MaLR 40 134 -433 412 121 0 0 chrX 40798069 40798135 -136176005 + L1MD3 LINE L1 7414 7479 -516 813 225 84 16 chrX 40798193 40798384 -136175756 + MER21B LTR ERV1 657 860 -3 1810 261 63 10 chrX 40798398 40798981 -136175159 - L1MEc LINE L1 -3355 2860 2247 2237 143 3 34 chrX 40798982 40799367 -136174773 - L1PB4 LINE L1 -2 6154 5782 466 178 11 0 chrX 40799725 40799815 -136174325 - L1PB4 LINE L1 -959 5187 5097 * 2220 273 52 32 chrX 40799814 40800882 -136173258 - L1MEc LINE L1 -4098 2298 1210 1454 196 84 21 chrX 40800986 40801368 -136172772 - L1PB4 LINE L1 -1800 4346 3941 1765 113 4 0 chrX 40801371 40801628 -136172512 + AluSp SINE Alu 49 306 -7 1690 109 60 25 chrX 40801629 40801914 -136172226 + AluY SINE Alu 1 295 -16 1762 260 71 42 chrX 40802581 40803585 -136170555 - L1ME3A LINE L1 -11 6159 5127 1164 353 50 35 chrX 40803658 40804610 -136169530 + L1MB1 LINE L1 2756 3722 -2424 12312 44 0 1 chrX 40804743 40806235 -136167905 - L1P LINE L1 -1341 4805 3315 205 284 40 47 chrX 40808990 40809138 -136165002 + (CGTG)n Simple_repeat Simple_repeat 4 150 0 2443 221 7 101 chrX 40810703 40811593 -136162547 + L1MB1 LINE L1 3718 4523 -1623 2324 204 45 5 chrX 40811598 40812152 -136161988 + L1MB1 LINE L1 5257 5832 -336 3860 181 43 18 chrX 40812156 40812896 -136161244 + L1M1 LINE L1 16 774 -6791 219 167 42 21 chrX 40814041 40814089 -136160051 - L3 LINE CR1 -917 660 612 1573 156 181 11 chrX 40815759 40815794 -136158346 - MLT2D LTR ERVL 0 414 386 324 0 0 0 chrX 40815794 40815830 -136158310 + (TG)n Simple_repeat Simple_repeat 2 37 0 1573 156 181 11 chrX 40815830 40816147 -136157993 - MLT2D LTR ERVL -28 386 2 3105 216 43 1 chrX 40817040 40818257 -136155883 + L1MCa LINE L1 1864 3134 -3292 260 204 0 0 chrX 40818371 40818425 -136155715 + LTR10A LTR ERV1 556 609 0 428 71 57 43 chrX 40818425 40818495 -136155645 + Alu SINE Alu 222 292 -19 951 70 0 8 chrX 40818497 40818625 -136155515 + FLAM_C SINE Alu 1 127 -16 1578 179 26 23 chrX 40818717 40818885 -136155255 - AluSx SINE Alu -3 309 138 2216 112 3 0 chrX 40818885 40819181 -136154959 - AluSq SINE Alu -14 299 3 1578 179 26 23 chrX 40819181 40819320 -136154820 - AluSx SINE Alu -174 138 1 1474 95 43 9 chrX 40819330 40819541 -136154599 - AluSq SINE Alu -15 298 81 336 267 0 11 chrX 40820260 40820350 -136153790 - MER117 DNA MER1_type -108 89 1 183 311 19 29 chrX 40820583 40820686 -136153454 - L2 LINE L2 -2071 1243 1142 663 228 68 6 chrX 40821390 40821552 -136152588 - MER45A DNA AcHobo -3 175 4 441 0 0 0 chrX 40821685 40821734 -136152406 + (CA)n Simple_repeat Simple_repeat 2 50 0 929 88 0 0 chrX 40821857 40821982 -136152158 - L1P LINE L1 -6021 125 1 * 3011 182 4 13 chrX 40821980 40822218 -136151922 - L1M2 LINE L1 -703 5609 5370 2147 122 0 3 chrX 40822218 40822514 -136151626 - AluY SINE Alu -16 295 1 3011 182 4 13 chrX 40822514 40823175 -136150965 - L1M2 LINE L1 -942 5370 4713 3205 155 34 12 chrX 40823179 40823855 -136150285 - L1M2 LINE L1 -1544 4602 3912 2261 153 22 136 chrX 40823855 40824489 -136149651 + L1MA8 LINE L1 5449 6010 -281 1131 197 72 12 chrX 40824662 40824982 -136149158 - L1M2 LINE L1 -2298 3848 3510 308 169 31 15 chrX 40824983 40825048 -136149092 - L1MD3 LINE L1 -10 7985 7920 254 203 47 31 chrX 40825110 40825174 -136148966 - L1MC3 LINE L1 -225 7560 7496 1591 172 26 23 chrX 40827081 40827244 -136146896 - AluSx SINE Alu -8 304 138 2219 104 3 3 chrX 40827244 40827541 -136146599 - AluSq SINE Alu -14 299 3 1591 172 26 23 chrX 40827541 40827680 -136146460 - AluSx SINE Alu -174 138 1 1967 103 28 11 chrX 40827689 40827971 -136146169 - AluSg SINE Alu -10 300 14 1233 157 80 70 chrX 40828058 40828357 -136145783 + AluJo SINE Alu 1 302 -10 20468 39 8 0 chrX 40829235 40831928 -136142212 - L1P LINE L1 -2470 3676 962 5260 154 29 46 chrX 40832951 40834029 -136140111 + Tigger2 DNA MER2_type 2 1060 -1658 775 64 0 0 chrX 40834051 40834160 -136139980 - L1PA4 LINE L1 -930 5216 5108 5944 30 1 0 chrX 40834160 40834927 -136139213 + L1PA4 LINE L1 5217 5984 -171 2177 120 0 3 chrX 40835754 40836053 -136138087 + AluSp SINE Alu 1 298 -15 962 142 0 0 chrX 40836061 40836195 -136137945 + AluSq/x SINE Alu 2 135 -178 1853 159 3 0 chrX 40836195 40836491 -136137649 + AluSx SINE Alu 1 297 -15 1125 129 6 0 chrX 40836864 40837027 -136137113 - AluSc SINE Alu 0 309 146 300 175 35 0 chrX 40837727 40837784 -136136356 - AluSp/q SINE Alu -5 298 240 1453 84 0 0 chrX 40837785 40837964 -136136176 - AluY SINE Alu -132 179 1 702 220 122 98 chrX 40837998 40838093 -136136047 - MER66B LTR ERV1 0 486 395 729 213 6 52 chrX 40838093 40838267 -136135873 - FRAM SINE Alu 0 166 1 702 220 122 98 chrX 40838267 40838282 -136135858 - MER66B LTR ERV1 -91 395 382 2003 112 22 0 chrX 40838282 40838551 -136135589 - AluSx SINE Alu -37 275 1 702 220 122 98 chrX 40838551 40838776 -136135364 - MER66B LTR ERV1 -104 382 142 2177 217 60 18 chrX 40839979 40840373 -136133767 + L1 LINE L1 3828 4257 -1889 2512 83 0 13 chrX 40840373 40840687 -136133453 + AluY SINE Alu 2 311 0 2177 217 60 18 chrX 40840687 40840896 -136133244 + L1 LINE L1 4257 4456 -1690 665 242 55 0 chrX 40840896 40841061 -136133079 + FRAM SINE Alu 1 167 -9 316 235 52 17 chrX 40841085 40841200 -136132940 + L1 LINE L1 4566 4684 -1462 1988 140 0 7 chrX 40841213 40841505 -136132635 - AluSx SINE Alu -15 297 8 6287 54 24 6 chrX 40841505 40842342 -136131798 + LTR13 LTR ERVK 1 852 -155 1209 161 0 5 chrX 40842460 40842521 -136131619 - AluSg SINE Alu -115 195 135 2447 91 0 0 chrX 40842521 40842817 -136131323 - AluSg SINE Alu -13 297 2 1209 161 0 5 chrX 40842817 40842948 -136131192 - AluSg SINE Alu -175 135 4 703 142 55 8 chrX 40843254 40843381 -136130759 + FLAM_C SINE Alu 1 133 0 2095 128 0 3 chrX 40843386 40843668 -136130472 + AluSx SINE Alu 14 294 -18 2248 105 16 3 chrX 40843668 40843972 -136130168 + AluSp SINE Alu 1 309 -4 1590 150 15 0 chrX 40843972 40844232 -136129908 + AluSp SINE Alu 1 264 -49 2128 116 0 23 chrX 40844469 40844779 -136129361 - AluSc SINE Alu -6 303 1 2366 117 0 0 chrX 40844779 40845087 -136129053 - AluSx SINE Alu -4 308 1 2240 105 7 0 chrX 40845414 40845710 -136128430 - AluSx SINE Alu -14 298 1 1298 195 93 6 chrX 40848570 40848969 -136125171 - MER66-int LTR ERV1 -4677 1999 1531 757 227 22 0 chrX 40851450 40851635 -136122505 + L1 LINE L1 2456 2644 -3502 4026 183 39 9 chrX 40851639 40852520 -136121620 + L1 LINE L1 3088 3994 -2152 14242 67 5 4 chrX 40852526 40854457 -136119683 + L1P LINE L1 13 1945 -4201 2253 116 3 0 chrX 40855254 40855556 -136118584 + AluSx SINE Alu 1 303 -9 2132 96 20 10 chrX 40855564 40855856 -136118284 + AluY SINE Alu 1 295 -16 2334 62 20 3 chrX 40856558 40856850 -136117290 - AluY SINE Alu -13 298 2 1461 186 69 9 chrX 40857165 40857499 -136116641 + Harlequin LTR ERV1 1378 1731 -4918 330 216 79 26 chrX 40857486 40857810 -136116330 + Harlequin LTR ERV1 860 1123 -5773 * 864 254 57 25 chrX 40857965 40858541 -136115599 - L1M4 LINE L1 -492 5686 5080 13392 188 10 3 chrX 40858542 40859726 -136114414 + L1PA14 LINE L1 2362 3537 -2624 254 50 25 0 chrX 40859726 40859766 -136114374 + (CAA)n Simple_repeat Simple_repeat 2 42 0 13392 188 10 3 chrX 40859766 40862414 -136111726 + L1PA14 LINE L1 3537 6160 -1 14076 141 13 5 chrX 40862594 40865175 -136108965 + Harlequin LTR ERV1 4281 6895 -1 2925 46 54 5 chrX 40865175 40865546 -136108594 + LTR2B LTR ERV1 1 389 -101 505 326 96 33 chrX 40865648 40866109 -136108031 - L1 LINE L1 -2839 4009 1737 518 266 106 18 chrX 40866235 40866453 -136107687 + MER63 DNA MER1_type 824 1060 0 1624 126 29 48 chrX 40866630 40866939 -136107201 - AluSx SINE Alu -8 304 2 903 76 0 0 chrX 40866940 40867058 -136107082 - AluSg/x SINE Alu -11 299 182 180 0 0 0 chrX 40867535 40867555 -136106585 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1555 112 43 0 chrX 40867569 40867801 -136106339 + AluSx SINE Alu 1 242 -70 926 94 16 0 chrX 40867879 40868007 -136106133 + AluJo SINE Alu 85 214 -98 268 71 71 0 chrX 40868009 40868051 -136106089 + FLAM SINE Alu 82 126 -7 2134 67 3 11 chrX 40868057 40868367 -136105773 + AluY SINE Alu 1 308 0 7911 58 2 0 chrX 40869712 40870727 -136103413 - L1P LINE L1 -2422 3724 2708 3990 151 35 0 chrX 40870828 40871462 -136102678 - Tigger2 DNA MER2_type -929 1789 1134 1809 151 10 3 chrX 40871474 40871779 -136102361 - AluSx SINE Alu 0 312 6 234 268 0 49 chrX 40871812 40871894 -136102246 + C-rich Low_complexity Low_complexity 1 78 0 390 341 0 0 chrX 40871917 40872090 -136102050 + C-rich Low_complexity Low_complexity 1 173 0 1636 143 4 8 chrX 40872514 40872772 -136101368 - AluSq SINE Alu -56 257 1 848 192 136 9 chrX 40872784 40872998 -136101142 - AluJb SINE Alu -26 286 46 1368 150 15 8 chrX 40872999 40873265 -136100875 + AluSg SINE Alu 6 273 -37 4700 72 2 6 chrX 40873416 40874043 -136100097 + L1P LINE L1 3722 4345 -1801 1503 181 31 16 chrX 40874738 40875058 -136099082 + L1M1 LINE L1 3237 3561 -4004 1134 151 6 6 chrX 40875060 40875239 -136098901 - THE1C LTR MaLR 0 375 197 2346 106 0 0 chrX 40875240 40875552 -136098588 + MER9 LTR ERVK 3 314 -197 229 367 0 0 chrX 40877823 40877962 -136096178 + C-rich Low_complexity Low_complexity 1 139 0 4028 34 2 0 chrX 40878062 40878532 -136095608 + L1PA5 LINE L1 5676 6146 -8 1582 173 7 0 chrX 40878704 40878999 -136095141 - AluJo SINE Alu -15 297 1 322 307 39 13 chrX 40879004 40879157 -136094983 - L1MA10 LINE L1 -9 6325 6169 320 256 40 32 chrX 40879161 40879286 -136094854 - L1ME1 LINE L1 -231 5935 5810 267 271 11 18 chrX 40879423 40879702 -136094438 + G-rich Low_complexity Low_complexity 1 276 0 8169 76 1 1 chrX 40880808 40882097 -136092043 - L1P2 LINE L1 -512 5643 4354 2204 112 0 6 chrX 40882659 40882971 -136091169 + AluSq SINE Alu 1 310 -3 310 263 0 17 chrX 40883037 40883155 -136090985 + FLAM_C SINE Alu 3 118 -15 496 322 0 0 chrX 40883214 40883388 -136090752 + C-rich Low_complexity Low_complexity 1 174 0 194 186 116 23 chrX 40883575 40883618 -136090522 - L2 LINE L2 -248 3065 3019 427 209 119 130 chrX 40883645 40883822 -136090318 - MER5B DNA MER1_type -3 175 1 586 286 55 35 chrX 40883827 40884082 -136090058 - L2 LINE L2 -339 2975 2716 652 208 37 12 chrX 40884094 40884282 -136089858 - L1MC4a LINE L1 -297 5824 5641 223 248 148 50 chrX 40884929 40885030 -136089110 + MIR SINE MIR 131 241 -21 1988 129 7 10 chrX 40886831 40887141 -136086999 - AluSx SINE Alu -3 309 1 182 333 0 39 chrX 40887500 40887578 -136086562 + L3 LINE CR1 1192 1266 -311 540 319 54 5 chrX 40888156 40888360 -136085780 - MIR SINE MIR -2 260 47 26 50 0 0 chrX 40888603 40888643 -136085497 + AT_rich Low_complexity Low_complexity 1 40 0 481 321 110 31 chrX 40888888 40889178 -136084962 + L1ME3 LINE L1 5636 5948 -214 24 0 0 0 chrX 40889416 40889440 -136084700 + AT_rich Low_complexity Low_complexity 1 24 0 508 334 74 38 chrX 40890119 40890511 -136083629 + L3 LINE CR1 1057 1462 -115 199 227 0 0 chrX 40890651 40890695 -136083445 - L3 LINE CR1 -6 1571 1528 401 300 162 29 chrX 40890873 40890899 -136083241 + MIR SINE MIR 3 24 -238 2235 103 3 0 chrX 40890899 40891210 -136082930 + AluSp SINE Alu 1 312 -1 401 300 162 29 chrX 40891210 40891393 -136082747 + MIR SINE MIR 24 240 -22 354 188 35 47 chrX 40891548 40891633 -136082507 + MER103 DNA DNA 67 150 -16 673 323 39 22 chrX 40891696 40891925 -136082215 - L3 LINE CR1 -1155 422 190 320 259 31 68 chrX 40892943 40893105 -136081035 + MIR3 SINE MIR 23 178 -30 213 333 117 17 chrX 40893835 40893955 -136080185 - MIR SINE MIR -21 241 110 240 111 0 0 chrX 40894119 40894155 -136079985 + (T)n Simple_repeat Simple_repeat 1 36 0 519 156 0 0 chrX 40894195 40894285 -136079855 - AluY SINE Alu -3 308 219 26 0 0 0 chrX 40894426 40894452 -136079688 + AT_rich Low_complexity Low_complexity 1 26 0 337 186 59 59 chrX 40894784 40894902 -136079238 + L2 LINE L2 2689 2806 -508 1991 97 31 66 chrX 40895129 40895448 -136078692 - AluSg SINE Alu -2 308 1 510 238 26 84 chrX 40895541 40895768 -136078372 + L1MC5 LINE L1 7226 7439 -522 833 242 49 24 chrX 40896691 40896978 -136077162 - MLT1L LTR MaLR 0 609 281 373 308 103 19 chrX 40897436 40897592 -136076548 + MIR SINE MIR 14 182 -80 1574 214 97 29 chrX 40897932 40898408 -136075732 - MER21B LTR ERV1 -56 807 276 1967 94 50 0 chrX 40898409 40898686 -136075454 - AluSx SINE Alu -21 291 1 937 135 9 2 chrX 40898789 40898947 -136075193 - L1PA16 LINE L1 -338 5828 5670 277 219 271 0 chrX 40898952 40899048 -136075092 - L2 LINE L2 -648 2666 2545 236 317 75 12 chrX 40900315 40900499 -136073641 - MIR SINE MIR -33 229 41 240 250 0 18 chrX 40900698 40900754 -136073386 + L2 LINE L2 3193 3247 -25 22 0 0 0 chrX 40901048 40901070 -136073070 + AT_rich Low_complexity Low_complexity 1 22 0 1824 225 16 50 chrX 40902255 40902414 -136071726 + HERVL68 LTR ERVL 1284 1447 -1590 836 140 0 29 chrX 40902414 40902550 -136071590 - FLAM_C SINE Alu 0 133 2 1824 225 16 50 chrX 40902550 40902874 -136071266 + HERVL68 LTR ERVL 1447 1751 -1286 292 133 33 0 chrX 40902885 40902945 -136071195 + CT-rich Low_complexity Low_complexity 2 63 0 1378 170 76 4 chrX 40902954 40903114 -136071026 - AluJo SINE Alu -14 298 151 324 0 0 0 chrX 40903114 40903150 -136070990 + (TG)n Simple_repeat Simple_repeat 2 37 0 1378 170 76 4 chrX 40903150 40903265 -136070875 - AluJo SINE Alu -161 151 3 1191 197 48 34 chrX 40903269 40903302 -136070838 + HERVL68 LTR ERVL 1740 1771 -1266 4335 114 25 8 chrX 40903302 40903944 -136070196 + MER39B LTR ERV1 1 653 0 1191 197 48 34 chrX 40903944 40904204 -136069936 + HERVL68 LTR ERVL 1771 2037 -1000 913 196 6 0 chrX 40904209 40904382 -136069758 + AluJb SINE Alu 137 310 -2 296 300 79 21 chrX 40904559 40904749 -136069391 + HERVL68 LTR ERVL 2218 2418 -619 376 222 14 140 chrX 40904955 40905029 -136069111 + MLT1B LTR MaLR 105 187 -203 2127 110 3 3 chrX 40905029 40905339 -136068801 + AluSx SINE Alu 1 310 -2 376 222 14 140 chrX 40905339 40905352 -136068788 + MLT1B LTR MaLR 187 200 -190 252 0 0 0 chrX 40905352 40905380 -136068760 + (TC)n Simple_repeat Simple_repeat 1 28 0 376 222 14 140 chrX 40905380 40905512 -136068628 + MLT1B LTR MaLR 200 297 -93 3264 225 52 30 chrX 40905612 40906458 -136067682 + HERVL68 LTR ERVL 2039 2903 -134 1821 187 31 8 chrX 40906458 40906811 -136067329 + MLT2D LTR ERVL 1 361 -53 255 103 0 0 chrX 40906816 40906855 -136067285 + (TC)n Simple_repeat Simple_repeat 2 40 0 396 0 0 0 chrX 40906855 40906899 -136067241 + (CA)n Simple_repeat Simple_repeat 2 45 0 471 139 14 0 chrX 40906925 40906997 -136067143 + HERVL68 LTR ERVL 2904 2976 -61 199 407 29 29 chrX 40907105 40907245 -136066895 - L2 LINE L2 -8 3264 3125 484 273 43 14 chrX 40907410 40907619 -136066521 - MER20B DNA MER1_type -287 496 282 253 206 151 0 chrX 40907640 40907713 -136066427 - MER20B DNA MER1_type -676 107 24 1603 225 45 26 chrX 40908181 40908688 -136065452 - L1MCc LINE L1 -1367 5574 5058 * 2356 243 84 65 chrX 40908687 40909864 -136064276 - L1MCc LINE L1 -2330 4611 3412 674 93 9 0 chrX 40909869 40909977 -136064163 + (TA)n Simple_repeat Simple_repeat 2 110 0 266 247 26 0 chrX 40909977 40910054 -136064086 - L1MCc LINE L1 -6328 95 17 315 305 11 11 chrX 40910123 40910218 -136063922 + MER58 DNA MER1_type 1 95 -120 791 281 96 14 chrX 40910252 40910615 -136063525 - L1MCc LINE L1 -3571 3370 2978 229 103 0 0 chrX 40910620 40910659 -136063481 - Alu SINE Alu -2 300 262 1008 261 20 45 chrX 40910671 40911024 -136063116 - L1MCc LINE L1 -6063 360 17 365 259 24 1 chrX 40911108 40911288 -136062852 + MER58 DNA MER1_type 16 2417 -3 1781 115 0 15 chrX 40911553 40911823 -136062317 + AluSx SINE Alu 39 304 -8 1243 193 106 90 chrX 40911829 40912316 -136061824 + MER66A LTR ERV1 106 478 0 1671 142 194 3 chrX 40912317 40912684 -136061456 - L1M2 LINE L1 -577 5735 5299 541 202 0 0 chrX 40912711 40912800 -136061340 - AluJb SINE Alu -75 237 149 306 221 143 14 chrX 40913717 40913852 -136060288 - L1ME4a LINE L1 0 6121 5968 380 140 0 43 chrX 40913852 40913945 -136060195 + L1MA7 LINE L1 6199 6287 -4 1569 182 48 0 chrX 40914074 40914365 -136059775 + AluJb SINE Alu 1 305 -7 208 257 0 14 chrX 40914371 40914441 -136059699 + A-rich Low_complexity Low_complexity 4 72 0 26 30 0 0 chrX 40914722 40914755 -136059385 + AT_rich Low_complexity Low_complexity 1 33 0 237 239 77 111 chrX 40915475 40915592 -136058548 + MER41A LTR ERV1 191 303 -251 * 1378 159 70 92 chrX 40915587 40915946 -136058194 + MER66A LTR ERV1 128 478 0 264 295 82 0 chrX 40916780 40916902 -136057238 + MER112 DNA MER1_type 124 255 -5 1839 137 65 0 chrX 40917027 40917319 -136056821 - AluSx SINE Alu -1 311 1 323 183 0 0 chrX 40917920 40917980 -136056160 - MSTB2 LTR MaLR -397 60 1 262 184 0 0 chrX 40917982 40918031 -136056109 - MLT1C LTR MaLR -272 195 147 2232 123 0 3 chrX 40918779 40919081 -136055059 + AluSx SINE Alu 1 301 -11 1502 208 65 25 chrX 40919245 40919704 -136054436 + MER110A LTR ERV1 26 482 -2 2759 107 8 3 chrX 40919778 40920151 -136053989 - THE1C LTR MaLR 0 375 1 1208 208 4 12 chrX 40920372 40920622 -136053518 + AluJo SINE Alu 45 292 -20 23 33 0 0 chrX 40920627 40920657 -136053483 + AT_rich Low_complexity Low_complexity 1 30 0 191 299 173 24 chrX 40923559 40923686 -136050454 - MIR SINE MIR -111 151 6 1528 193 3 33 chrX 40924519 40924825 -136049315 + AluJb SINE Alu 1 297 -15 2133 134 13 0 chrX 40926677 40926983 -136047157 - AluSx SINE Alu -2 310 1 2363 110 0 0 chrX 40928156 40928465 -136045675 - AluSc SINE Alu 0 309 1 1265 217 54 7 chrX 40928513 40928790 -136045350 + AluJo SINE Alu 1 290 -12 1789 187 158 13 chrX 40928835 40929220 -136044920 + MER21B LTR ERV1 1 441 -422 300 313 69 7 chrX 40929404 40929548 -136044592 + MIR SINE MIR 50 202 -60 29 0 0 0 chrX 40929724 40929753 -136044387 + AT_rich Low_complexity Low_complexity 1 29 0 856 318 75 25 chrX 40930018 40930508 -136043632 - REP3 LTR ERV -47 515 1 193 318 16 0 chrX 40930619 40930682 -136043458 - L2 LINE L2 -5 3308 3245 634 260 128 0 chrX 40930875 40931117 -136043023 - L1M4 LINE L1 -1235 4911 4639 501 300 186 6 chrX 40931144 40931471 -136042669 - L2 LINE L2 -1531 1783 1398 226 167 0 0 chrX 40931521 40931557 -136042583 + MLT1B LTR MaLR 1 36 -354 2253 156 10 10 chrX 40931595 40931980 -136042160 + MLT1B LTR MaLR 4 388 -2 239 222 74 0 chrX 40935604 40935658 -136038482 - MIR SINE MIR -111 151 94 8276 19 1 1 chrX 40936266 40937467 -136036673 + L1PA3 LINE L1 4955 6155 0 330 250 23 0 chrX 40938347 40938435 -136035705 - L1M4 LINE L1 -2462 3684 3595 252 0 0 0 chrX 40938508 40938536 -136035604 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 746 202 0 0 chrX 40938743 40938867 -136035273 - FLAM_C SINE Alu -9 124 1 1618 206 6 3 chrX 40940381 40940701 -136033439 + L1 LINE L1 4819 5139 -1007 843 235 54 64 chrX 40940715 40941014 -136033126 + L1MEc LINE L1 1987 2288 -3927 1417 160 113 0 chrX 40941014 40941270 -136032870 + AluJo SINE Alu 1 285 -27 843 235 54 64 chrX 40941270 40941684 -136032456 + L1MEc LINE L1 2288 2644 -3571 504 0 0 0 chrX 40942013 40942069 -136032071 + (TA)n Simple_repeat Simple_repeat 1 56 0 2517 169 11 55 chrX 40942071 40942615 -136031525 - LTR1 LTR ERV1 -265 520 1 453 36 0 0 chrX 40942730 40942785 -136031355 + (TA)n Simple_repeat Simple_repeat 1 55 0 503 247 52 26 chrX 40942785 40942979 -136031161 + L1M4 LINE L1 4286 4484 -1662 249 33 0 0 chrX 40942990 40943020 -136031120 + (TA)n Simple_repeat Simple_repeat 1 30 0 587 60 0 0 chrX 40943026 40943093 -136031047 - AluSg/x SINE Alu -30 280 214 1900 243 84 19 chrX 40943099 40943720 -136030420 + L1M4 LINE L1 4476 5136 -1010 182 172 0 0 chrX 40943883 40943912 -136030228 - MIR SINE MIR -72 190 162 504 299 25 30 chrX 40944102 40944303 -136029837 - MIR SINE MIR 0 262 63 198 339 50 41 chrX 40944660 40944781 -136029359 - MER5A DNA MER1_type 0 189 68 198 0 0 0 chrX 40945566 40945588 -136028552 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5245 99 16 4 chrX 40945602 40946339 -136027801 - L1PB1 LINE L1 -21 6846 6101 1558 16 11 37 chrX 40946339 40946526 -136027614 - L1PA4 LINE L1 -2 6153 5972 756 33 0 0 chrX 40946526 40946616 -136027524 + L1PA4 LINE L1 5855 5944 -210 * 15243 205 18 5 chrX 40946612 40948254 -136025886 - L1PB1 LINE L1 -748 6114 4495 1147 31 0 0 chrX 40948254 40948384 -136025756 - L1PA6 LINE L1 -3 6151 6022 15243 205 18 5 chrX 40948384 40950360 -136023780 - L1PB1 LINE L1 -2367 4495 2474 2488 174 11 2 chrX 40950460 40950930 -136023210 - L1PB1 LINE L1 -4970 1893 1420 3206 227 73 8 chrX 40950935 40951719 -136022421 - L1PB1 LINE L1 -5998 865 31 888 184 68 24 chrX 40951725 40951932 -136022208 - AluJo SINE Alu -13 299 84 237 246 55 36 chrX 40952155 40952265 -136021875 + MER20B DNA MER1_type 27 138 -645 * 458 296 41 10 chrX 40952262 40952458 -136021682 + MER20B DNA MER1_type 290 491 -292 216 0 0 0 chrX 40952989 40953013 -136021127 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 1438 240 0 20 chrX 40953013 40953371 -136020769 - MLT2D LTR ERVL -63 351 1 2230 209 30 27 chrX 40953381 40953942 -136020198 - HERVL68-D LTR ERVL -144 2893 2331 312 345 47 0 chrX 40954581 40954729 -136019411 - MIR SINE MIR -62 200 46 21 0 0 0 chrX 40955398 40955419 -136018721 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chrX 40955526 40955551 -136018589 + AT_rich Low_complexity Low_complexity 1 25 0 245 218 11 58 chrX 40955744 40955831 -136018309 + MIR SINE MIR 180 262 0 755 161 16 16 chrX 40955942 40956066 -136018074 + FLAM_C SINE Alu 1 124 -9 332 235 25 0 chrX 40956349 40956430 -136017710 + L1M4 LINE L1 3595 3677 -2469 1525 161 7 179 chrX 40956435 40956877 -136017263 + MER47A DNA MER2_type 1 366 0 1219 264 70 37 chrX 40956877 40957506 -136016634 + L1M4 LINE L1 3681 4330 -1816 3753 190 102 19 chrX 40957511 40958297 -136015843 - MER21B LTR ERV1 -12 851 1 1489 151 180 65 chrX 40958299 40958683 -136015457 - MSTA LTR MaLR 0 428 1 1178 213 18 15 chrX 40958768 40959040 -136015100 - AluJo SINE Alu -39 273 1 295 319 0 0 chrX 40959799 40959890 -136014250 - MER94 DNA DNA -39 95 5 1541 98 0 0 chrX 40960786 40960980 -136013160 - AluSx SINE Alu -118 194 1 1256 202 4 0 chrX 40964572 40964805 -136009335 - AluJo SINE Alu -34 278 45 1501 219 50 48 chrX 40965093 40965572 -136008568 - MER110A LTR ERV1 -2 466 19 2329 91 0 3 chrX 40966945 40967241 -136006899 - AluSc SINE Alu -14 295 1 271 292 83 0 chrX 40967300 40967420 -136006720 - MER112 DNA MER1_type -7 253 124 2781 133 0 23 chrX 40968226 40968655 -136005485 - L1PA11 LINE L1 -8 6166 5748 431 197 163 14 chrX 40968833 40968980 -136005160 - L1M4 LINE L1 -1227 4919 4751 183 100 0 0 chrX 40969025 40969055 -136005085 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 445 252 7 7 chrX 40969266 40969401 -136004739 - L2 LINE L2 -1655 1659 1525 287 133 0 0 chrX 40969430 40969475 -136004665 + MER77 LTR ERV1 561 605 0 759 296 43 72 chrX 40969523 40969978 -136004162 + HERVL68-D LTR ERVL 6 522 -2515 1544 183 29 0 chrX 40969978 40970257 -136003883 + AluJo SINE Alu 1 287 -25 759 296 43 72 chrX 40970257 40970489 -136003651 + HERVL68-D LTR ERVL 522 759 -2278 1648 233 59 33 chrX 40970507 40971018 -136003122 + HERVL68-D LTR ERVL 1834 2357 -680 543 192 0 0 chrX 40971200 40971299 -136002841 + FLAM_C SINE Alu 45 143 0 903 173 26 0 chrX 40971316 40971472 -136002668 + FRAM SINE Alu 1 154 -22 2018 104 35 3 chrX 40971614 40971903 -136002237 + AluSx SINE Alu 1 298 -14 1420 177 0 4 chrX 40972343 40972586 -136001554 - AluJb SINE Alu 0 312 71 291 191 0 0 chrX 40974357 40974420 -135999720 + (CA)n Simple_repeat Simple_repeat 1 63 0 1796 117 25 25 chrX 40975007 40975327 -135998813 + AluSx SINE Alu 1 320 0 1574 209 37 27 chrX 40976222 40976623 -135997517 + HERVL68-D LTR ERVL 2489 2893 -144 1452 224 8 20 chrX 40976633 40976990 -135997150 + MLT2D LTR ERVL 1 353 -61 180 0 0 0 chrX 40977001 40977021 -135997119 + (TC)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chrX 40977021 40977042 -135997098 + (CA)n Simple_repeat Simple_repeat 1 21 0 428 100 17 0 chrX 40977078 40977138 -135997002 + HERVL68 LTR ERVL 2912 2972 -65 410 284 50 15 chrX 40977543 40977744 -135996396 - MER20B DNA MER1_type -286 497 290 268 243 29 0 chrX 40977773 40977843 -135996297 - MER20B DNA MER1_type -676 107 36 998 234 89 0 chrX 40978060 40978317 -135995823 + AluJb SINE Alu 6 285 -27 533 297 26 5 chrX 40978429 40978624 -135995516 - MER20B DNA MER1_type -294 489 291 823 201 72 14 chrX 40978962 40979171 -135994969 + AluJo SINE Alu 85 305 -7 489 309 10 29 chrX 40980420 40980624 -135993516 + MIR SINE MIR 63 262 0 2452 250 60 14 chrX 40981005 40981833 -135992307 - L1M4 LINE L1 -1008 5138 4273 1274 299 25 48 chrX 40981848 40982611 -135991529 - L1M4 LINE L1 -2330 3816 3072 778 132 15 37 chrX 40982611 40982747 -135991393 - AluSg/x SINE Alu 0 312 180 2340 105 0 0 chrX 40982762 40983066 -135991074 - AluSg SINE Alu -6 304 1 1958 221 68 30 chrX 40983071 40983664 -135990476 - L1M4 LINE L1 -3059 3087 2473 387 244 12 0 chrX 40983706 40983788 -135990352 - AluJb SINE Alu -175 127 45 1840 227 48 35 chrX 40983971 40984486 -135989654 - HERVL68-A1 LTR ERVL -680 2357 1836 703 302 58 61 chrX 40984491 40984737 -135989403 - HERVL68-A1 LTR ERVL -2262 775 530 1472 220 3 0 chrX 40984737 40985023 -135989117 - AluJo SINE Alu -25 287 1 703 302 58 61 chrX 40985023 40985462 -135988678 - HERVL68-A1 LTR ERVL -2507 530 9 301 209 116 0 chrX 40986023 40986109 -135988031 - L1M4 LINE L1 -1667 4479 4384 789 232 15 50 chrX 40986114 40986312 -135987828 + AluJo SINE Alu 2 192 -120 279 194 42 28 chrX 40986330 40986402 -135987738 + FRAM/FAM SINE Alu 18 90 -85 1847 201 131 16 chrX 40986491 40986906 -135987234 + MER21B LTR ERV1 1 554 -377 315 294 118 6 chrX 40987045 40987215 -135986925 + MIR SINE MIR 12 200 -62 263 317 30 12 chrX 40987324 40987491 -135986649 - MER113 DNA MER1_type? -341 180 11 230 312 96 55 chrX 40987692 40987910 -135986230 - REP3 LTR ERV -47 515 289 525 283 266 12 chrX 40988021 40988522 -135985618 - L2 LINE L2 -1535 1779 1152 2436 143 8 15 chrX 40988621 40989012 -135985128 - MLT1B LTR MaLR -2 388 1 1363 204 0 33 chrX 40989041 40989345 -135984795 - AluJo SINE Alu -18 294 1 877 199 14 1 chrX 40989606 40989788 -135984352 + L1 LINE L1 4797 4982 -1164 339 301 41 14 chrX 40989791 40989937 -135984203 + MER20B DNA MER1_type 342 491 -292 418 63 63 0 chrX 40990341 40990404 -135983736 - L1MA7 LINE L1 -7 6284 6218 279 241 139 15 chrX 40990426 40990563 -135983577 + L1ME4a LINE L1 5968 6121 0 324 98 39 0 chrX 40990675 40990726 -135983414 - MLT2A1 LTR ERVL -2 442 390 329 204 0 11 chrX 40990735 40990823 -135983317 + (TA)n Simple_repeat Simple_repeat 2 88 0 2956 86 10 5 chrX 40990823 40991217 -135982923 - MLT2A1 LTR ERVL -40 404 9 881 118 7 7 chrX 40991967 40992102 -135982038 - L1MA3 LINE L1 0 6305 6171 1983 129 13 26 chrX 40992130 40992440 -135981700 - AluSx SINE Alu -6 306 1 21 36 0 0 chrX 40992542 40992570 -135981570 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrX 40992606 40992626 -135981514 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 768 232 0 7 chrX 40992627 40992782 -135981358 + FRAM SINE Alu 12 165 -11 2781 197 20 2 chrX 40993023 40993560 -135980580 + L1 LINE L1 4784 5330 -816 838 146 7 21 chrX 40993561 40993705 -135980435 + AluJo SINE Alu 1 142 -170 925 301 14 7 chrX 40993705 40993991 -135980149 + L1MCc LINE L1 139 426 -5997 890 263 67 25 chrX 40994062 40994378 -135979762 - L1MA9 LINE L1 -30 6282 5954 498 109 30 20 chrX 40994418 40994519 -135979621 + CT-rich Low_complexity Low_complexity 4 105 0 310 148 37 0 chrX 40994531 40994585 -135979555 - L1MA9 LINE L1 -370 5942 5887 * 11659 33 11 0 chrX 40994577 40996626 -135977514 - L1PA4 LINE L1 -68 6087 4016 1028 179 56 0 chrX 40996626 40996821 -135977319 - MER110A LTR ERV1 -262 206 1 189 0 0 0 chrX 40996929 40996950 -135977190 + (TG)n Simple_repeat Simple_repeat 2 22 0 3137 122 19 33 chrX 40996961 40997477 -135976663 - L1MA5 LINE L1 -11 6289 5781 2180 130 60 0 chrX 40997511 40997879 -135976261 - L1MA4 LINE L1 -1 6299 5910 506 187 0 0 chrX 40997879 40997954 -135976186 - AluJ/FLAM SINE Alu -228 84 10 1817 144 3 27 chrX 40999934 41000233 -135973907 + AluSx SINE Alu 1 292 -20 196 333 95 27 chrX 41000450 41000597 -135973543 - MIR3 SINE MIR 0 208 52 2048 154 0 0 chrX 41002160 41002472 -135971668 - AluSx SINE Alu 0 312 1 1758 117 8 4 chrX 41003528 41003784 -135970356 + AluSq SINE Alu 34 290 -23 201 143 0 0 chrX 41003784 41003819 -135970321 + (CAAAC)n Simple_repeat Simple_repeat 5 39 0 229 114 45 0 chrX 41003901 41003945 -135970195 - MLT2A1 LTR ERVL 0 444 399 2049 183 41 26 chrX 41004045 41004583 -135969557 - MLT2A2 LTR ERVL -6 548 2 257 270 96 9 chrX 41005545 41005660 -135968480 - MER112 DNA MER1_type -12 248 124 2927 119 12 0 chrX 41006443 41006864 -135967276 - L1PA11 LINE L1 -1 6173 5748 358 226 158 0 chrX 41007031 41007177 -135966963 - L1M4 LINE L1 -1227 4919 4751 320 294 7 7 chrX 41007239 41007375 -135966765 + L2 LINE L2 1525 1660 -1654 327 279 174 18 chrX 41007581 41007800 -135966340 - L2 LINE L2 -1537 1777 1525 261 143 0 0 chrX 41007832 41007874 -135966266 + MER77 LTR ERV1 564 605 0 375 340 13 51 chrX 41007874 41008109 -135966031 + MER77-int LTR ERV1 5 230 -3961 * 947 280 59 58 chrX 41007943 41008364 -135965776 + HERVL68-D LTR ERVL 24 531 -2506 1506 212 4 0 chrX 41008364 41008642 -135965498 + AluJo SINE Alu 9 287 -25 947 280 59 58 chrX 41008642 41008871 -135965269 + HERVL68-D LTR ERVL 531 758 -2279 1551 253 58 31 chrX 41008889 41009406 -135964734 + HERVL68-D LTR ERVL 1836 2366 -671 926 178 16 70 chrX 41009515 41009757 -135964383 + AluJb SINE Alu 50 278 -34 2053 122 0 7 chrX 41010037 41010360 -135963780 + AluSp SINE Alu 6 313 0 2022 106 6 26 chrX 41011790 41012122 -135962018 + AluSq SINE Alu 9 334 0 2018 127 0 0 chrX 41012610 41012893 -135961247 - AluSx SINE Alu -19 293 11 2464 71 0 0 chrX 41013923 41014220 -135959920 - AluY SINE Alu -14 297 1 1208 204 27 44 chrX 41015285 41015579 -135958561 + AluJo SINE Alu 1 289 -13 1989 190 101 22 chrX 41015630 41016059 -135958081 + MER21B LTR ERV1 1 554 -377 267 347 48 0 chrX 41016221 41016368 -135957772 + MIR SINE MIR 47 200 -62 248 281 83 21 chrX 41016434 41016626 -135957514 - MER113 DNA MER1_type? -307 214 11 2049 228 35 25 chrX 41017041 41017606 -135956534 + HERVL68-D LTR ERVL 2323 2893 -144 1447 229 16 19 chrX 41017616 41017983 -135956157 + MLT2D LTR ERVL 1 366 -48 351 0 0 0 chrX 41018034 41018073 -135956067 + (CA)n Simple_repeat Simple_repeat 2 40 0 447 164 14 0 chrX 41018093 41018166 -135955974 + HERVL68 LTR ERVL 2899 2972 -65 930 215 62 5 chrX 41019102 41019311 -135954829 + AluJo SINE Alu 85 305 -7 364 314 15 44 chrX 41020561 41020765 -135953375 + MIR SINE MIR 65 262 0 22 0 0 0 chrX 41021125 41021147 -135952993 + AT_rich Low_complexity Low_complexity 1 22 0 2246 230 96 15 chrX 41021147 41021885 -135952255 - L1M4 LINE L1 -1007 5139 4342 486 326 48 24 chrX 41021955 41022289 -135951851 - L1M4 LINE L1 -2330 3816 3475 632 101 0 0 chrX 41023771 41023860 -135950280 - MLT2A2 LTR ERVL -363 90 2 640 49 0 0 chrX 41024831 41024913 -135949227 - L1PA2 LINE L1 0 6155 6074 4127 42 17 0 chrX 41025465 41025947 -135948193 + LTR2B LTR ERV1 1 490 0 2617 124 5 43 chrX 41026249 41026693 -135947447 - L1PA11 LINE L1 0 6174 5748 312 245 175 0 chrX 41026865 41027008 -135947132 - L1M4 LINE L1 -1228 4918 4751 240 345 7 0 chrX 41027066 41027205 -135946935 + L2 LINE L2 1521 1660 -1654 254 295 58 36 chrX 41027490 41027629 -135946511 - L2 LINE L2 -1648 1666 1525 264 143 0 0 chrX 41027661 41027703 -135946437 + MER77 LTR ERV1 564 605 0 758 329 32 44 chrX 41027755 41028197 -135945943 + HERVL68-D LTR ERVL 9 525 -2512 1473 199 11 3 chrX 41028197 41028483 -135945657 + AluJo SINE Alu 1 288 -24 758 329 32 44 chrX 41028483 41028715 -135945425 + HERVL68-D LTR ERVL 525 758 -2279 1463 231 62 45 chrX 41028727 41029255 -135944885 + HERVL68-D LTR ERVL 1830 2366 -671 880 246 0 25 chrX 41029376 41029616 -135944524 + AluJb SINE Alu 45 278 -34 507 96 0 0 chrX 41029756 41029839 -135944301 + (CA)n Simple_repeat Simple_repeat 2 84 0 3970 53 0 8 chrX 41029942 41030432 -135943708 + L1PA7 LINE L1 5669 6154 0 1258 243 3 13 chrX 41030445 41030749 -135943391 + AluJb SINE Alu 1 301 -1 2339 265 57 14 chrX 41031758 41032570 -135941570 - L1M4 LINE L1 -1022 5124 4278 635 273 58 68 chrX 41032572 41032953 -135941187 - L1M4 LINE L1 -2333 3813 3437 849 179 71 0 chrX 41032972 41033140 -135941000 - L1MA1 LINE L1 -5 6297 6118 279 71 0 0 chrX 41037567 41037609 -135936531 + (T)n Simple_repeat Simple_repeat 1 42 0 5678 152 10 16 chrX 41041068 41042645 -135931495 - L1MA2 LINE L1 -175 6129 4568 2387 267 67 29 chrX 41042647 41042982 -135931158 - L1M4 LINE L1 -2696 3450 3129 2144 123 10 0 chrX 41042982 41043291 -135930849 - AluSx SINE Alu 0 312 1 2387 267 67 29 chrX 41043291 41044128 -135930012 - L1M4 LINE L1 -3017 3129 2234 21 36 0 0 chrX 41044347 41044375 -135929765 + AT_rich Low_complexity Low_complexity 1 28 0 255 93 0 0 chrX 41044540 41044583 -135929557 + (A)n Simple_repeat Simple_repeat 1 43 0 515 216 6 0 chrX 41044898 41045060 -135929080 + CT-rich Low_complexity Low_complexity 3 165 0 4369 121 13 13 chrX 41045127 41045814 -135928326 - L1PA13 LINE L1 -2 6161 5475 945 269 16 41 chrX 41045867 41046232 -135927908 - L1MCc LINE L1 -6051 372 17 253 322 23 0 chrX 41046301 41046388 -135927752 + MER58 DNA MER1_type 1 89 -2331 1176 178 7 48 chrX 41046986 41047255 -135926885 + AluJo SINE Alu 45 302 -10 2330 72 10 3 chrX 41047831 41048124 -135926016 - AluSc SINE Alu -14 295 1 21 0 0 0 chrX 41049217 41049238 -135924902 + AT_rich Low_complexity Low_complexity 1 21 0 648 227 60 0 chrX 41050283 41050433 -135923707 - AluSg/x SINE Alu -18 292 134 813 233 4 40 chrX 41053421 41053649 -135920491 + AluJo SINE Alu 3 222 -90 25 0 0 0 chrX 41053678 41053703 -135920437 + AT_rich Low_complexity Low_complexity 1 25 0 1676 223 105 25 chrX 41053752 41054160 -135919980 + MER21B LTR ERV1 1 441 -422 380 300 65 10 chrX 41054560 41054760 -135919380 - MER113 DNA MER1_type? -297 224 14 1624 146 8 4 chrX 41054819 41055073 -135919067 + AluSq SINE Alu 52 306 -7 309 242 23 8 chrX 41055073 41055201 -135918939 + GA-rich Low_complexity Low_complexity 1 130 0 286 308 39 0 chrX 41055962 41056066 -135918074 + MIR SINE MIR 82 189 -73 3472 219 37 1 chrX 41057451 41058181 -135915959 - MLT1C-int LTR MaLR -615 756 1 2658 162 0 9 chrX 41058187 41058453 -135915687 - MLT1C LTR MaLR -6 461 199 2355 161 4 62 chrX 41058453 41058871 -135915269 - MSTB2 LTR MaLR -1 456 68 2030 136 0 31 chrX 41058871 41059188 -135914952 - AluSx SINE Alu -3 309 3 2355 161 4 62 chrX 41059188 41059253 -135914887 - MSTB2 LTR MaLR -389 68 1 2658 162 0 9 chrX 41059253 41059425 -135914715 - MLT1C LTR MaLR -268 199 27 186 43 0 0 chrX 41059658 41059681 -135914459 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1192 214 7 31 chrX 41060557 41060851 -135913289 + AluJo SINE Alu 1 287 -15 2123 184 10 8 chrX 41060884 41061271 -135912869 + MLT1B LTR MaLR 1 388 -2 207 308 51 13 chrX 41061371 41061449 -135912691 + L2 LINE L2 1153 1233 -2081 292 296 159 13 chrX 41061653 41061879 -135912261 + L2 LINE L2 1525 1783 -1531 520 263 136 8 chrX 41061908 41062144 -135911996 + L1M4 LINE L1 4640 4905 -1241 703 331 67 26 chrX 41062510 41063002 -135911138 + REP3 LTR ERV 3 514 -48 380 300 65 10 chrX 41063222 41063422 -135910718 + MER113 DNA MER1_type? 14 224 -297 1175 228 140 25 chrX 41063822 41064178 -135909962 - MER21B LTR ERV1 -422 441 45 570 154 103 3 chrX 41264178 41264351 -135709789 - AluJo SINE Alu -75 237 1 22 0 0 0 chrX 41264593 41264615 -135709525 + AT_rich Low_complexity Low_complexity 1 22 0 1971 130 47 7 chrX 41264740 41265040 -135709100 - AluJb SINE Alu 0 312 1 741 214 0 0 chrX 41265040 41265166 -135708974 - FLAM_A SINE Alu -6 127 2 21 0 0 0 chrX 41265174 41265195 -135708945 + AT_rich Low_complexity Low_complexity 1 21 0 780 167 14 36 chrX 41265298 41265436 -135708704 - AluJo SINE Alu -176 136 2 625 200 9 17 chrX 41265674 41265789 -135708351 - AluJo/FRAM SINE Alu -23 289 176 1866 98 4 8 chrX 41265790 41266035 -135708105 - AluY SINE Alu -67 244 1 1278 190 148 8 chrX 41266054 41266317 -135707823 - AluJo SINE Alu -12 300 1 22 0 0 0 chrX 41266325 41266347 -135707793 + AT_rich Low_complexity Low_complexity 1 22 0 2543 73 0 6 chrX 41266349 41266662 -135707478 + AluY SINE Alu 1 311 0 2446 90 0 0 chrX 41267032 41267342 -135706798 - AluSq SINE Alu -3 310 1 2960 161 59 2 chrX 41268360 41268838 -135705302 + MLT1D LTR MaLR 1 505 0 470 270 43 9 chrX 41268854 41268969 -135705171 - L2 LINE L2 0 3272 3154 600 153 27 0 chrX 41269116 41269227 -135704913 - L1MD3 LINE L1 0 7995 7882 894 137 0 0 chrX 41269230 41269361 -135704779 - FLAM_C SINE Alu -12 131 1 2099 169 39 5 chrX 41269387 41269796 -135704344 - L1MC4a LINE L1 -343 7465 7043 255 283 98 0 chrX 41269975 41270067 -135704073 - MIR SINE MIR -71 191 91 2327 83 0 71 chrX 41270725 41271061 -135703079 - AluSx SINE Alu 0 312 1 205 361 66 16 chrX 41271310 41271432 -135702708 + MIR3 SINE MIR 3 130 -78 2241 116 0 0 chrX 41271542 41271844 -135702296 + AluSx SINE Alu 1 302 -10 1268 172 0 56 chrX 41271949 41272217 -135701923 + AluJo SINE Alu 44 296 -16 2117 138 0 0 chrX 41273276 41273567 -135700573 + AluJb SINE Alu 1 291 -21 2211 108 3 3 chrX 41273661 41273958 -135700182 + AluSx SINE Alu 1 297 -15 1543 148 121 0 chrX 41274029 41274286 -135699854 - AluJo SINE Alu -21 291 4 4158 132 44 75 chrX 41274313 41274365 -135699775 - L1MB4 LINE L1 0 6180 6128 2183 114 0 3 chrX 41274365 41274662 -135699478 - AluSx SINE Alu -16 296 1 4158 132 44 75 chrX 41274662 41274807 -135699333 - L1MB4 LINE L1 -52 6128 5980 2504 66 0 3 chrX 41274807 41275110 -135699030 + AluY SINE Alu 1 302 -9 4158 132 44 75 chrX 41275110 41275280 -135698860 - L1MB4 LINE L1 -200 5980 5806 2374 90 0 3 chrX 41275280 41275580 -135698560 + AluSg SINE Alu 1 299 -11 4158 132 44 75 chrX 41275580 41275939 -135698201 - L1MB4 LINE L1 -374 5806 5477 225 65 0 0 chrX 41275939 41275970 -135698170 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 4158 132 44 75 chrX 41275970 41276056 -135698084 - L1MB4 LINE L1 -703 5477 5390 601 218 222 51 chrX 41276056 41276172 -135697968 - MLT1B LTR MaLR -68 322 227 2319 103 0 3 chrX 41276172 41276482 -135697658 - AluSx SINE Alu -3 309 1 601 218 222 51 chrX 41276482 41276640 -135697500 - MLT1B LTR MaLR -163 227 1 1849 168 0 23 chrX 41277416 41277725 -135696415 - AluJb SINE Alu -10 302 1 1811 163 0 46 chrX 41277946 41278252 -135695888 - AluJb SINE Alu -20 292 1 2300 115 0 3 chrX 41278516 41278829 -135695311 - AluSx SINE Alu 0 312 1 2400 68 7 0 chrX 41279090 41279384 -135694756 + AluSp SINE Alu 2 297 -16 499 321 19 52 chrX 41279538 41279846 -135694294 + L1M4 LINE L1 2805 3102 -3044 27 73 0 0 chrX 41279870 41279925 -135694215 + AT_rich Low_complexity Low_complexity 1 55 0 2206 119 0 10 chrX 41279998 41280308 -135693832 + AluSx SINE Alu 1 307 -5 1691 159 10 30 chrX 41280406 41280701 -135693439 - AluJb SINE Alu -23 289 1 483 307 62 28 chrX 41280735 41281158 -135692982 - HAL1b LINE L1 -759 589 293 1787 142 60 7 chrX 41281724 41282005 -135692135 + AluJb SINE Alu 1 296 -16 1757 158 0 34 chrX 41282153 41282480 -135691660 - AluJb SINE Alu 0 317 1 198 89 107 0 chrX 41282559 41282615 -135691525 + (TATAG)n Simple_repeat Simple_repeat 3 64 0 2005 138 3 0 chrX 41282907 41283197 -135690943 + AluSx SINE Alu 1 291 -21 1156 208 5 18 chrX 41283709 41283930 -135690210 + MER58A DNA MER1_type 1 218 -6 2387 81 0 0 chrX 41284249 41284545 -135689595 + AluSg SINE Alu 1 296 -14 2332 69 24 0 chrX 41285503 41285791 -135688349 - AluSc SINE Alu -14 295 1 4955 140 35 18 chrX 41285803 41286634 -135687506 - L1MA7 LINE L1 -4 6287 5443 2217 104 0 3 chrX 41286666 41286965 -135687175 - AluSg SINE Alu -12 298 1 458 230 122 14 chrX 41286974 41287122 -135687018 - MIR SINE MIR -74 188 25 1396 201 60 66 chrX 41287149 41287265 -135686875 + L1MC5 LINE L1 7412 7527 -434 2282 170 25 37 chrX 41287265 41287554 -135686586 + MER63B DNA MER1_type 2 287 -775 1973 125 0 47 chrX 41287554 41287884 -135686256 - AluSx SINE Alu 0 316 1 2282 170 25 37 chrX 41287884 41288029 -135686111 + MER63B DNA MER1_type 287 432 -4 1396 201 60 66 chrX 41288029 41288183 -135685957 + L1MC5 LINE L1 7527 7680 -281 1732 167 3 36 chrX 41288183 41288488 -135685652 - AluJb SINE Alu -14 298 4 1396 201 60 66 chrX 41288488 41288719 -135685421 + L1MC5 LINE L1 7680 7911 -50 51 31 0 0 chrX 41288947 41289012 -135685128 + AT_rich Low_complexity Low_complexity 1 65 0 213 224 0 0 chrX 41289547 41289605 -135684535 + (TA)n Simple_repeat Simple_repeat 2 59 0 2075 134 0 29 chrX 41289667 41289980 -135684160 + AluJo SINE Alu 1 304 -8 243 0 0 0 chrX 41289980 41290007 -135684133 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 297 0 0 0 chrX 41290006 41290039 -135684101 + (GA)n Simple_repeat Simple_repeat 2 34 0 2313 92 0 10 chrX 41290138 41290443 -135683697 + AluSx SINE Alu 1 302 -10 421 209 52 9 chrX 41290463 41290578 -135683562 - L1ME4a LINE L1 -199 5922 5803 2338 112 0 6 chrX 41291464 41291778 -135682362 - AluSx SINE Alu 0 312 1 604 121 48 38 chrX 41291835 41292003 -135682137 - L1MA7 LINE L1 -752 5431 5276 272 284 91 0 chrX 41292145 41292233 -135681907 + MIR SINE MIR 7 102 -160 1757 174 0 24 chrX 41292279 41292577 -135681563 + AluJo SINE Alu 1 291 -21 2126 119 0 0 chrX 41292579 41292898 -135681242 + AluSx SINE Alu 1 319 0 1694 102 164 4 chrX 41293033 41293289 -135680851 + AluSc SINE Alu 1 297 -12 2389 81 0 0 chrX 41294650 41294947 -135679193 - AluY SINE Alu -14 297 1 2199 114 0 7 chrX 41295148 41295446 -135678694 - AluSx SINE Alu -16 296 1 459 299 22 0 chrX 41296103 41296240 -135677900 - HAL1 LINE L1 -625 1882 1743 419 214 20 10 chrX 41296253 41296351 -135677789 - MLT1E2 LTR MaLR -279 347 249 1894 157 3 10 chrX 41296749 41297054 -135677086 + AluJo SINE Alu 1 303 -9 231 278 174 17 chrX 41297149 41297264 -135676876 + L2 LINE L2 3134 3266 -6 2316 78 7 7 chrX 41297543 41297838 -135676302 + AluSg SINE Alu 1 295 -15 2072 127 0 17 chrX 41298545 41298844 -135675296 - AluJb SINE Alu -18 294 1 21 0 0 0 chrX 41299618 41299639 -135674501 + AT_rich Low_complexity Low_complexity 1 21 0 2464 82 0 3 chrX 41300010 41300316 -135673824 - AluSp SINE Alu -8 305 1 229 281 109 0 chrX 41300949 41301013 -135673127 - L2 LINE L2 -61 3211 3141 2306 64 0 0 chrX 41301383 41301707 -135672433 - AluY SINE Alu 0 324 1 2250 116 0 3 chrX 41302443 41302746 -135671394 - AluSx SINE Alu -10 302 1 337 273 173 0 chrX 41304950 41305060 -135669080 + MIR3 SINE MIR 34 162 -46 890 254 134 32 chrX 41305088 41305430 -135668710 - L2 LINE L2 -61 3252 2876 582 235 171 0 chrX 41305523 41305693 -135668447 - MIR SINE MIR -16 246 48 2156 128 0 0 chrX 41305811 41306108 -135668032 - AluSx SINE Alu -15 297 1 272 275 28 76 chrX 41306660 41306871 -135667269 - L1MC4 LINE L1 -1 8041 7841 3741 179 85 41 chrX 41306912 41307005 -135667135 - L1ME2 LINE L1 -19 6145 6058 1278 203 14 5 chrX 41307005 41307222 -135666918 - MER58A DNA MER1_type -1 223 5 3741 179 85 41 chrX 41307222 41307316 -135666824 - L1ME2 LINE L1 -106 6058 5970 1745 178 3 3 chrX 41307316 41307614 -135666526 - AluJo SINE Alu -14 298 1 3741 179 85 41 chrX 41307614 41307751 -135666389 - L1ME2 LINE L1 -194 5970 5841 2296 94 7 0 chrX 41307751 41308050 -135666090 - AluSp SINE Alu -12 301 1 3741 179 85 41 chrX 41308050 41308926 -135665214 - L1ME2 LINE L1 -323 5841 4885 1159 139 0 56 chrX 41308918 41308949 -135665191 - L1M4 LINE L1 -656 5518 5487 * 2616 50 7 0 chrX 41308949 41309251 -135664889 - AluY SINE Alu -7 304 1 1159 139 0 56 chrX 41309251 41309434 -135664706 - L1M4 LINE L1 -687 5487 5316 893 168 0 0 chrX 41309434 41309577 -135664563 - FLAM_C SINE Alu 0 143 1 2633 174 18 12 chrX 41309577 41310306 -135663834 - L1M4 LINE L1 -814 5332 4484 * 4188 112 61 79 chrX 41310304 41310394 -135663746 + L1MA9 LINE L1 5494 5584 -728 1961 141 3 20 chrX 41310394 41310699 -135663441 + AluJb SINE Alu 1 300 -12 4188 112 61 79 chrX 41310699 41311246 -135662894 + L1MA9 LINE L1 5584 6115 -197 2106 131 3 0 chrX 41311246 41311536 -135662604 - AluSx SINE Alu -21 291 1 4188 112 61 79 chrX 41311536 41311731 -135662409 + L1MA9 LINE L1 6115 6312 0 1631 185 56 33 chrX 41311747 41311782 -135662358 - L1M4 LINE L1 -1667 4479 4446 2526 136 0 8 chrX 41311782 41312157 -135661983 - L1PA16 LINE L1 0 6166 5795 1631 185 56 33 chrX 41312157 41312428 -135661712 - L1M4 LINE L1 -1700 4446 4157 2230 98 0 3 chrX 41312428 41312723 -135661417 - AluSg SINE Alu -16 294 1 1631 185 56 33 chrX 41312723 41312864 -135661276 - L1M4 LINE L1 -1989 4157 4021 472 221 154 0 chrX 41312885 41313021 -135661119 - L1ME1 LINE L1 -5 6161 6005 1171 202 5 0 chrX 41313155 41313373 -135660767 - AluJb SINE Alu -10 302 84 3224 230 28 71 chrX 41313474 41313628 -135660512 - L1M4 LINE L1 -972 5568 5409 2279 82 11 0 chrX 41313628 41313950 -135660190 - AluSq SINE Alu 0 325 1 3224 230 28 71 chrX 41313950 41314627 -135659513 - L1M4 LINE L1 -1131 5409 4704 1978 156 0 3 chrX 41314627 41314928 -135659212 - AluJb SINE Alu -12 300 1 3224 230 28 71 chrX 41314928 41315103 -135659037 - L1M4 LINE L1 -1836 4704 4523 2528 72 0 0 chrX 41315103 41315407 -135658733 + AluSc SINE Alu 1 304 -5 3224 230 28 71 chrX 41315407 41315722 -135658418 - L1M4 LINE L1 -2017 4523 4337 2242 104 0 7 chrX 41315722 41316021 -135658119 + AluSx SINE Alu 1 297 -15 3224 230 28 71 chrX 41316021 41316291 -135657849 - L1M4 LINE L1 -2203 4337 4057 1195 216 56 73 chrX 41316260 41316377 -135657763 - L1MDa LINE L1 -3526 3014 2897 * 2333 99 16 0 chrX 41316377 41316681 -135657459 - AluSx SINE Alu -3 309 1 1195 216 56 73 chrX 41316681 41317263 -135656877 - L1MDa LINE L1 -3643 2897 2325 519 17 0 0 chrX 41317263 41317323 -135656817 + (CA)n Simple_repeat Simple_repeat 1 60 0 1195 216 56 73 chrX 41317323 41317413 -135656727 - L1MDa LINE L1 -4215 2325 2235 2203 100 0 3 chrX 41317415 41317706 -135656434 - AluSx SINE Alu -22 290 1 1815 164 3 20 chrX 41317706 41318005 -135656135 - AluJo SINE Alu -8 304 11 374 175 126 10 chrX 41318012 41318115 -135656025 - L1MC4 LINE L1 -1116 6926 6812 1548 229 88 26 chrX 41318115 41318569 -135655571 - L2 LINE L2 -1600 1714 1233 752 103 0 9 chrX 41319179 41319286 -135654854 - AluSx SINE Alu -13 297 192 1140 92 0 0 chrX 41319286 41319428 -135654712 - AluSx SINE Alu -170 142 1 189 147 0 0 chrX 41320232 41320266 -135653874 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 837 153 51 0 chrX 41320272 41320409 -135653731 - FRAM SINE Alu -4 172 29 195 222 0 0 chrX 41320452 41320488 -135653652 - L2 LINE L2 -17 3255 3220 607 329 82 31 chrX 41321097 41321547 -135652593 - HAL1b LINE L1 -542 806 334 21 0 0 0 chrX 41321558 41321579 -135652561 + AT_rich Low_complexity Low_complexity 1 21 0 2283 88 3 44 chrX 41321660 41321806 -135652334 + AluSq SINE Alu 1 151 -162 2907 47 14 0 chrX 41321806 41322168 -135651972 + L1PA8 LINE L1 5805 6171 -1 2283 88 3 44 chrX 41322168 41322339 -135651801 + AluSq SINE Alu 151 305 -8 2009 113 28 0 chrX 41322341 41322632 -135651508 + AluSp SINE Alu 1 299 -14 391 228 118 0 chrX 41322832 41322959 -135651181 - L1ME3 LINE L1 0 6162 6021 2031 223 41 7 chrX 41322962 41323500 -135650640 - L1ME3 LINE L1 -303 5859 5304 1703 173 79 64 chrX 41323488 41324238 -135649902 - L1MC4 LINE L1 -417 7625 6813 * 1486 153 0 46 chrX 41324238 41324499 -135649641 - AluJo SINE Alu -23 289 41 1703 173 79 64 chrX 41324499 41324611 -135649529 - L1MC4 LINE L1 -1229 6813 6704 423 0 0 0 chrX 41324611 41324658 -135649482 + (TG)n Simple_repeat Simple_repeat 1 47 0 718 241 23 78 chrX 41324733 41324915 -135649225 + L2 LINE L2 2281 2447 -867 2209 104 6 31 chrX 41324915 41325233 -135648907 - AluSx SINE Alu 0 312 3 718 241 23 78 chrX 41325233 41325307 -135648833 + L2 LINE L2 2447 2523 -791 365 73 0 0 chrX 41325314 41325369 -135648771 - L1MA3 LINE L1 -5 6300 6246 834 133 7 7 chrX 41325370 41325505 -135648635 + AluJb SINE Alu 1 135 -177 1349 60 0 0 chrX 41325505 41325687 -135648453 - L1PA8 LINE L1 -352 5820 5639 2578 44 3 0 chrX 41325687 41326004 -135648136 + L1PA8 LINE L1 5845 6163 -9 25 0 0 0 chrX 41326004 41326029 -135648111 + AT_rich Low_complexity Low_complexity 1 25 0 1040 198 0 0 chrX 41326029 41326196 -135647944 + AluJb SINE Alu 129 295 -17 2585 93 65 16 chrX 41326196 41326645 -135647495 - L1MA3 LINE L1 -50 6255 5785 823 284 57 25 chrX 41326650 41326728 -135647412 + L2 LINE L2 2516 2590 -724 1394 124 169 8 chrX 41326728 41326977 -135647163 - AluSg1 SINE Alu -20 289 1 823 284 57 25 chrX 41326977 41327215 -135646925 + L2 LINE L2 2590 2842 -472 2199 114 0 3 chrX 41327236 41327535 -135646605 - AluSx SINE Alu -14 298 1 1470 154 86 39 chrX 41328273 41328396 -135645744 + AluJb SINE Alu 1 117 -195 2155 110 10 0 chrX 41328396 41328687 -135645453 - AluSx SINE Alu -18 294 1 1470 154 86 39 chrX 41328687 41328842 -135645298 + AluJb SINE Alu 117 292 -20 22 0 0 0 chrX 41328952 41328974 -135645166 + AT_rich Low_complexity Low_complexity 1 22 0 283 330 60 0 chrX 41329041 41329141 -135644999 + MIR SINE MIR 38 143 -119 228 295 158 0 chrX 41329317 41329412 -135644728 + MIR SINE MIR 151 260 -2 183 300 17 17 chrX 41329508 41329568 -135644572 + MER5B DNA MER1_type 69 128 -50 1892 135 76 0 chrX 41329780 41330069 -135644071 - AluSp SINE Alu -2 311 1 288 250 60 36 chrX 41330102 41330186 -135643954 + L2 LINE L2 3214 3299 -14 347 238 94 116 chrX 41330232 41330552 -135643588 + L1ME4a LINE L1 5596 5908 -213 22 70 0 0 chrX 41330655 41330698 -135643442 + AT_rich Low_complexity Low_complexity 1 43 0 836 252 84 26 chrX 41330714 41331024 -135643116 + L1ME4a LINE L1 5505 5832 -289 183 42 0 0 chrX 41331091 41331115 -135643025 + (TG)n Simple_repeat Simple_repeat 2 25 0 611 257 26 7 chrX 41331290 41331442 -135642698 + MER8 DNA MER2_type 1 155 -84 858 189 78 0 chrX 41331458 41331611 -135642529 - FRAM SINE Alu -10 166 2 2233 103 3 25 chrX 41331709 41332028 -135642112 + AluSx SINE Alu 1 312 0 188 281 88 94 chrX 41332654 41332814 -135641326 - L2 LINE L2 -469 2845 2687 949 185 17 62 chrX 41333850 41334105 -135640035 - L1MDb LINE L1 -5102 1307 1065 2079 145 0 0 chrX 41334105 41334402 -135639738 + AluSx SINE Alu 1 297 -15 949 185 17 62 chrX 41334402 41334438 -135639702 - L1MDb LINE L1 -5344 1065 1029 2407 95 0 0 chrX 41334438 41334743 -135639397 - AluSx SINE Alu -7 305 1 1205 204 62 57 chrX 41334750 41334922 -135639218 - L1MDb LINE L1 -5344 1065 895 2314 109 16 0 chrX 41334922 41335226 -135638914 - AluSx SINE Alu -3 309 1 1205 204 62 57 chrX 41335226 41335441 -135638699 - L1MDb LINE L1 -5514 895 676 767 307 12 4 chrX 41335548 41335799 -135638341 - L1MDb LINE L1 -6136 273 21 684 101 0 18 chrX 41336619 41336728 -135637412 - L1MB8 LINE L1 -1 6177 6071 279 288 152 0 chrX 41337142 41337274 -135636866 - L1ME4a LINE L1 -19 6102 5951 651 268 47 71 chrX 41337319 41337459 -135636681 - MIR SINE MIR -10 252 119 2343 99 0 0 chrX 41337459 41337751 -135636389 + AluSp SINE Alu 1 292 -21 651 268 47 71 chrX 41337751 41337864 -135636276 - MIR SINE MIR -143 119 5 240 216 59 49 chrX 41337887 41337989 -135636151 - L1ME4a LINE L1 -215 5906 5804 229 263 12 0 chrX 41338044 41338124 -135636016 + CT-rich Low_complexity Low_complexity 3 83 0 557 266 29 6 chrX 41338124 41338297 -135635843 - L1ME4a LINE L1 -415 5706 5530 196 276 20 82 chrX 41338928 41339008 -135635132 + MIR3 SINE MIR 96 169 -39 579 273 42 7 chrX 41339008 41339151 -135634989 + MER5B DNA MER1_type 2 149 -29 1905 141 10 14 chrX 41339173 41339463 -135634677 + AluJo SINE Alu 2 290 -22 24 0 0 0 chrX 41339469 41339493 -135634647 + AT_rich Low_complexity Low_complexity 1 24 0 660 154 0 0 chrX 41339547 41339664 -135634476 - L1MA3 LINE L1 0 6305 6189 28 0 0 0 chrX 41339774 41339802 -135634338 + AT_rich Low_complexity Low_complexity 1 28 0 2128 108 49 0 chrX 41340051 41340337 -135633803 - AluSx SINE Alu -12 300 1 2421 109 3 0 chrX 41340643 41340955 -135633185 - AluSq SINE Alu 0 313 1 323 299 0 0 chrX 41342205 41342302 -135631838 - L1ME1 LINE L1 -24 6142 6046 2108 70 56 21 chrX 41344493 41344777 -135629363 - AluSg SINE Alu -16 294 1 231 246 0 0 chrX 41344948 41345013 -135629127 - L1ME1 LINE L1 -1902 5906 5842 290 220 10 20 chrX 41345168 41345268 -135628872 + (TA)n Simple_repeat Simple_repeat 1 99 0 249 181 162 57 chrX 41345269 41345374 -135628766 - L1ME1 LINE L1 -1903 5905 5790 44 20 0 0 chrX 41345378 41345429 -135628711 + AT_rich Low_complexity Low_complexity 1 51 0 400 246 112 0 chrX 41345681 41345860 -135628280 - HAL1 LINE L1 -856 1634 1436 1067 151 38 5 chrX 41345881 41346067 -135628073 + MER3 DNA MER1_type 18 209 0 378 319 94 56 chrX 41346113 41346527 -135627613 - L1MEd LINE L1 -1110 1380 859 631 294 81 40 chrX 41346545 41347040 -135627100 + L1MC/D LINE L1 5243 5758 -747 360 111 0 0 chrX 41347194 41347248 -135626892 + (TG)n Simple_repeat Simple_repeat 2 55 0 1813 185 0 0 chrX 41347248 41347534 -135626606 - AluJo SINE Alu -26 286 1 384 22 0 0 chrX 41347551 41347596 -135626544 + (CA)n Simple_repeat Simple_repeat 2 46 0 3285 78 22 19 chrX 41347746 41348210 -135625930 - MER4C LTR ERV1 0 465 1 462 289 59 20 chrX 41348266 41348418 -135625722 + MIR SINE MIR 20 177 -85 3878 213 91 21 chrX 41348515 41349291 -135624849 - L1MB5 LINE L1 -36 6138 5418 2466 54 0 19 chrX 41349291 41349605 -135624535 - AluY SINE Alu -3 308 1 3878 213 91 21 chrX 41349605 41349626 -135624514 - L1MB5 LINE L1 -756 5418 5400 816 148 0 15 chrX 41349626 41349761 -135624379 + FLAM_C SINE Alu 1 133 0 3878 213 91 21 chrX 41349761 41350762 -135623378 - L1MB5 LINE L1 -774 5400 4162 2291 118 0 0 chrX 41350770 41351067 -135623073 - AluSx SINE Alu -15 297 1 244 250 89 0 chrX 41351774 41351830 -135622310 - L2 LINE L2 -71 3242 3182 2276 91 7 3 chrX 41352409 41352716 -135621424 - AluSq SINE Alu -5 308 1 441 0 0 0 chrX 41353581 41353630 -135620510 + (TTTTG)n Simple_repeat Simple_repeat 5 53 0 2371 92 3 3 chrX 41354485 41354789 -135619351 - AluSq SINE Alu -9 304 1 1976 124 0 48 chrX 41356316 41356630 -135617510 + AluSx SINE Alu 1 299 -13 427 242 227 33 chrX 41356665 41356996 -135617144 - L1MC4a LINE L1 -1666 6142 5748 2406 83 0 3 chrX 41357152 41357452 -135616688 + AluSx SINE Alu 1 299 -13 2438 86 0 0 chrX 41357890 41358194 -135615946 - AluY SINE Alu -7 304 1 1662 187 10 3 chrX 41358358 41358647 -135615493 - AluJo SINE Alu -21 291 1 1741 157 7 21 chrX 41358715 41359045 -135615095 - AluJo SINE Alu 0 327 2 303 161 0 0 chrX 41359226 41359282 -135614858 + CT-rich Low_complexity Low_complexity 3 58 0 1789 166 6 41 chrX 41359282 41359596 -135614544 - AluJo SINE Alu -9 303 1 2187 112 0 0 chrX 41360297 41360583 -135613557 + AluSq SINE Alu 1 286 -27 420 181 0 0 chrX 41360583 41360666 -135613474 + (CATA)n Simple_repeat Simple_repeat 3 85 0 2124 183 37 45 chrX 41360925 41361434 -135612706 + MLT1D LTR MaLR 1 505 0 1779 208 34 38 chrX 41361926 41362402 -135611738 - L1ME LINE L1 -379 5787 5314 465 126 63 72 chrX 41362416 41362527 -135611613 - L1MD1 LINE L1 -1 6241 6132 3750 217 50 16 chrX 41362545 41363374 -135610766 - L1ME LINE L1 -830 5316 4437 724 67 39 0 chrX 41363374 41363478 -135610662 - L1PA15 LINE L1 -4 6161 6054 3750 217 50 16 chrX 41363478 41363800 -135610340 - L1ME LINE L1 -1709 4437 4127 463 204 48 0 chrX 41363805 41363908 -135610232 - L1ME LINE L1 -2051 4095 3988 225 164 55 0 chrX 41363971 41364026 -135610114 - L1 LINE L1 -2467 3679 3622 1404 179 77 61 chrX 41364058 41364449 -135609691 - L1MB7 LINE L1 0 6184 5788 2806 157 18 54 chrX 41364457 41364595 -135609545 - L1MB8 LINE L1 -118 6060 5919 1650 115 50 0 chrX 41364595 41364865 -135609275 + AluJb SINE Alu 38 285 -27 2806 157 18 54 chrX 41364865 41365284 -135608856 - L1MB8 LINE L1 -259 5919 5522 991 204 17 26 chrX 41365284 41365572 -135608568 + L1MB8 LINE L1 5282 5490 -688 2802 157 22 147 chrX 41365612 41365869 -135608271 - L1MB8 LINE L1 -906 5240 4952 2360 87 7 0 chrX 41365869 41366179 -135607961 - AluSx SINE Alu 0 312 1 2802 157 22 147 chrX 41366179 41366239 -135607901 - L1MB8 LINE L1 -1194 4952 4886 2411 103 0 0 chrX 41366239 41366551 -135607589 - AluSx SINE Alu 0 312 1 2802 157 22 147 chrX 41366551 41367089 -135607051 - L1MB8 LINE L1 -1260 4886 4504 2304 122 0 0 chrX 41367089 41367400 -135606740 - AluSx SINE Alu -1 311 1 2802 157 22 147 chrX 41367400 41367458 -135606682 - L1MB8 LINE L1 -1642 4504 4440 1260 158 0 36 chrX 41367460 41367707 -135606433 - AluJo SINE Alu 0 310 72 988 192 77 35 chrX 41367716 41367870 -135606270 - L1MB8 LINE L1 -3453 2693 2522 2544 57 0 0 chrX 41367870 41368171 -135605969 + AluY SINE Alu 1 301 -10 988 192 77 35 chrX 41368171 41368276 -135605864 - L1MB8 LINE L1 -3624 2522 2423 2351 84 7 0 chrX 41368371 41368667 -135605473 - AluSp SINE Alu -15 298 1 923 225 56 107 chrX 41369441 41369798 -135604342 - L1MEc LINE L1 -3798 3159 2786 225 0 0 0 chrX 41369798 41369823 -135604317 + (TA)n Simple_repeat Simple_repeat 2 26 0 923 225 56 107 chrX 41369823 41369851 -135604289 - L1MEc LINE L1 -4171 2786 2758 2160 130 3 0 chrX 41369851 41370144 -135603996 - AluSx SINE Alu -18 294 1 923 225 56 107 chrX 41370144 41370157 -135603983 - L1MEc LINE L1 -4199 2758 2746 1660 173 19 42 chrX 41370157 41370469 -135603671 - AluJo SINE Alu -7 305 1 923 225 56 107 chrX 41370469 41370554 -135603586 - L1MEc LINE L1 -4211 2746 2658 2336 113 0 0 chrX 41370554 41370864 -135603276 - AluSq SINE Alu -3 310 1 2192 94 6 31 chrX 41370867 41371187 -135602953 - AluSx SINE Alu 0 312 1 923 225 56 107 chrX 41371187 41371612 -135602528 - L1MEc LINE L1 -4301 2656 2369 1761 149 11 0 chrX 41372174 41372442 -135601698 - AluJo SINE Alu -16 296 26 2289 73 43 7 chrX 41373039 41373341 -135600799 - AluSq SINE Alu 0 313 1 1536 248 53 2 chrX 41373344 41373799 -135600341 - L1MEc LINE L1 -4728 2231 1754 2167 110 3 0 chrX 41373846 41374136 -135600004 - AluSx SINE Alu -21 291 1 2035 216 88 111 chrX 41374151 41374422 -135599718 - L1MEc LINE L1 -5061 1794 1518 1511 164 17 13 chrX 41374422 41374660 -135599480 + MER8 DNA MER2_type 1 239 0 2035 216 88 111 chrX 41374660 41374981 -135599159 - L1MEc LINE L1 -5337 1518 1191 1480 143 4 86 chrX 41374981 41375103 -135599037 - AluJo SINE Alu -56 256 126 1977 107 28 17 chrX 41375103 41375392 -135598748 - AluSc SINE Alu -17 292 1 1480 143 4 86 chrX 41375392 41375403 -135598737 - AluJo SINE Alu -186 126 116 2441 67 10 0 chrX 41375403 41375701 -135598439 - AluY SINE Alu -10 301 1 1480 143 4 86 chrX 41375701 41375845 -135598295 - AluJo SINE Alu -196 116 1 2035 216 88 111 chrX 41375845 41376271 -135597869 - L1MEc LINE L1 -5664 1191 798 198 0 0 0 chrX 41376424 41376446 -135597694 + (TA)n Simple_repeat Simple_repeat 2 23 0 5069 71 25 10 chrX 41376453 41377556 -135596584 - SVA Other Other -955 1369 19 1263 80 0 0 chrX 41377599 41377761 -135596379 - AluY SINE Alu -7 304 143 2093 53 0 4 chrX 41377761 41378008 -135596132 - AluY SINE Alu -65 246 1 332 309 142 51 chrX 41378008 41378303 -135595837 - L1MEc LINE L1 -6207 648 327 1087 218 67 65 chrX 41378318 41378456 -135595684 - L1M4 LINE L1 -2528 3618 3482 2183 98 0 20 chrX 41378456 41378753 -135595387 + AluSx SINE Alu 1 291 -21 1087 218 67 65 chrX 41378753 41379150 -135594990 - L1M4 LINE L1 -2664 3482 3082 2293 86 0 3 chrX 41379156 41379458 -135594682 - AluSg SINE Alu -1 309 9 1542 153 0 41 chrX 41379490 41379758 -135594382 + AluJb SINE Alu 38 294 -18 3088 172 63 26 chrX 41379758 41380383 -135593757 - L1MC4a LINE L1 -1087 6698 6086 424 221 33 33 chrX 41380368 41380490 -135593650 - L1MC3 LINE L1 -1579 6206 6085 * 503 216 58 37 chrX 41380463 41380490 -135593650 - L1M4 LINE L1 -3168 2978 2953 2304 99 0 0 chrX 41380490 41380794 -135593346 - AluY SINE Alu -7 304 1 503 216 58 37 chrX 41380794 41380906 -135593234 - L1M4 LINE L1 -3193 2953 2831 2045 116 0 13 chrX 41380906 41381207 -135592933 - AluSg SINE Alu -5 305 9 503 216 58 37 chrX 41381207 41381256 -135592884 - L1M4 LINE L1 -3315 2831 2785 2288 114 0 0 chrX 41381280 41381579 -135592561 - AluSx SINE Alu -13 299 1 482 265 81 27 chrX 41381757 41381980 -135592160 - L1MEc LINE L1 -6613 246 12 22 35 0 0 chrX 41382038 41382067 -135592073 + AT_rich Low_complexity Low_complexity 1 29 0 1857 151 3 23 chrX 41382101 41382400 -135591740 - AluJo SINE Alu -19 293 1 579 242 51 6 chrX 41382710 41382867 -135591273 + MER103 DNA DNA 2 165 -1 2310 115 0 0 chrX 41382888 41383193 -135590947 + AluSx SINE Alu 1 305 -7 315 0 0 0 chrX 41383279 41383314 -135590826 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1186 114 0 0 chrX 41383317 41383475 -135590665 - AluSg/x SINE Alu -31 279 122 2028 219 125 8 chrX 41383539 41384036 -135590104 + MER68 LTR ERV1 1 555 -7 1490 137 5 0 chrX 41384065 41384276 -135589864 + AluJb SINE Alu 1 212 -100 2502 52 0 0 chrX 41384315 41384603 -135589537 + AluY SINE Alu 1 288 -23 531 289 96 5 chrX 41384618 41384805 -135589335 - MIR SINE MIR -57 205 2 2334 106 0 6 chrX 41384923 41385235 -135588905 + AluSq SINE Alu 1 310 -3 2179 122 3 0 chrX 41385687 41385991 -135588149 - AluSx SINE Alu -7 305 1 185 357 85 31 chrX 41386000 41386129 -135588011 - L2 LINE L2 -619 2695 2560 1589 182 37 14 chrX 41386326 41386622 -135587518 - AluJo SINE Alu -9 303 1 225 65 0 0 chrX 41387107 41387138 -135587002 + (TG)n Simple_repeat Simple_repeat 2 32 0 314 86 0 0 chrX 41387160 41387211 -135586929 - Alu SINE Alu -20 282 241 360 59 0 0 chrX 41387455 41387506 -135586634 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 1990 118 4 0 chrX 41387529 41387800 -135586340 - AluSx SINE Alu -35 277 6 2273 102 7 0 chrX 41388321 41388616 -135585524 + AluSx SINE Alu 1 297 -15 1952 91 0 0 chrX 41388786 41389029 -135585111 - AluSx SINE Alu -24 288 46 278 281 223 11 chrX 41389052 41389211 -135584929 + MIR SINE MIR 16 198 -64 336 300 86 7 chrX 41389756 41389896 -135584244 + MIR3 SINE MIR 51 201 -7 629 185 7 89 chrX 41389993 41390033 -135584107 + MER94 DNA DNA 1 43 -91 2445 71 7 0 chrX 41390033 41390328 -135583812 - AluSg SINE Alu -13 297 1 629 185 7 89 chrX 41390328 41390433 -135583707 + MER94 DNA DNA 43 134 0 1002 182 136 5 chrX 41390918 41391116 -135583024 - MER58A DNA MER1_type 0 224 1 746 218 83 0 chrX 41392092 41392248 -135581892 + MIR SINE MIR 40 208 -54 778 288 116 74 chrX 41392411 41392873 -135581267 - L2 LINE L2 -34 3238 2797 2339 92 3 6 chrX 41392873 41393187 -135580953 - AluSq SINE Alu 0 313 1 778 288 116 74 chrX 41393187 41393635 -135580505 - L2 LINE L2 -475 2797 2302 555 207 55 7 chrX 41393678 41393823 -135580317 - HAL1b LINE L1 -6 1342 1191 1905 96 0 15 chrX 41394995 41395255 -135578885 - AluSg SINE Alu -14 296 41 631 258 105 18 chrX 41400107 41400336 -135573804 - MIR SINE MIR -12 250 2 2362 96 0 0 chrX 41400416 41400717 -135573423 - AluSg SINE Alu -9 301 1 2129 134 0 3 chrX 41400720 41401019 -135573121 - AluJb SINE Alu -14 298 1 232 190 17 69 chrX 41401513 41401571 -135572569 + MIR3 SINE MIR 108 162 -46 529 190 113 21 chrX 41401758 41401900 -135572240 + MIR SINE MIR 90 244 -18 2224 94 0 0 chrX 41402160 41402437 -135571703 + AluSc SINE Alu 1 277 -32 483 256 107 48 chrX 41402724 41402788 -135571352 - MER5B DNA MER1_type 0 178 119 571 96 85 0 chrX 41402788 41402882 -135571258 + L1MB2 LINE L1 6068 6169 -2 483 256 107 48 chrX 41402882 41402985 -135571155 - MER5B DNA MER1_type -59 119 1 270 236 154 18 chrX 41403268 41403378 -135570762 - MIR SINE MIR -1 261 137 271 297 33 0 chrX 41403383 41403474 -135570666 + L2 LINE L2 3220 3313 0 428 293 60 8 chrX 41403478 41403611 -135570529 - MIR SINE MIR -117 145 6 236 250 29 0 chrX 41403648 41403716 -135570424 - MLT1K LTR MaLR -7 581 512 2241 100 3 0 chrX 41404230 41404519 -135569621 + AluSx SINE Alu 1 290 -22 2377 72 0 0 chrX 41404527 41404817 -135569323 + AluSc SINE Alu 1 290 -19 272 149 0 21 chrX 41404989 41405036 -135569104 - MER5A DNA MER1_type 0 189 144 3142 163 44 36 chrX 41405038 41405159 -135568981 + MER67B LTR ERV1 1 120 -541 2139 121 3 3 chrX 41405159 41405464 -135568676 - AluSx SINE Alu -7 305 1 3142 163 44 36 chrX 41405464 41405549 -135568591 + MER67B LTR ERV1 120 203 -458 2185 98 0 7 chrX 41405549 41405879 -135568261 - AluSx SINE Alu 0 328 1 3142 163 44 36 chrX 41405879 41406304 -135567836 + MER67B LTR ERV1 203 639 -22 716 166 29 14 chrX 41406307 41406446 -135567694 - MER5A DNA MER1_type -48 141 1 2313 97 0 26 chrX 41406450 41406759 -135567381 + AluSx SINE Alu 1 301 -11 685 145 197 8 chrX 41407294 41407411 -135566729 + AluJb SINE Alu 112 250 -62 2206 89 44 0 chrX 41408468 41408761 -135565379 - AluSc SINE Alu -3 306 1 186 103 0 0 chrX 41409119 41409148 -135564992 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 247 210 0 86 chrX 41409366 41409447 -135564693 + C-rich Low_complexity Low_complexity 2 75 0 471 312 145 50 chrX 41409621 41410227 -135563913 + L1M2 LINE L1 397 1060 -5789 233 242 11 0 chrX 41410297 41410388 -135563752 + (CCTA)n Simple_repeat Simple_repeat 3 94 0 194 420 0 8 chrX 41411029 41411160 -135562980 - L2 LINE L2 -218 3054 2925 818 249 69 29 chrX 41411858 41412103 -135562037 - MIR SINE MIR 0 262 8 245 339 87 8 chrX 41412199 41412326 -135561814 - L2 LINE L2 -2 3311 3175 332 224 155 17 chrX 41413819 41413935 -135560205 - MER113 DNA MER1_type? -383 138 7 360 317 66 6 chrX 41414070 41414253 -135559887 - MIR SINE MIR -3 259 66 1166 326 159 22 chrX 41414521 41415690 -135558450 + L2 LINE L2 1611 2939 -375 228 211 96 0 chrX 41416205 41416257 -135557883 - MIR SINE MIR -69 193 137 2322 113 0 0 chrX 41416287 41416588 -135557552 - AluSx SINE Alu -11 301 1 267 339 64 9 chrX 41416620 41416729 -135557411 - MIR SINE MIR -128 134 20 888 256 130 4 chrX 41416814 41417044 -135557096 + MIR SINE MIR 4 262 0 1053 122 0 30 chrX 41417064 41417228 -135556912 + AluJb SINE Alu 135 293 -19 294 246 15 15 chrX 41417380 41417445 -135556695 - L2 LINE L2 -5 3267 3203 651 265 76 9 chrX 41417450 41417673 -135556467 - L2 LINE L2 0 3313 3076 199 160 0 160 chrX 41417655 41417730 -135556410 - L2 LINE L2 -71 3201 3139 * 292 247 0 26 chrX 41417896 41417973 -135556167 + Charlie8 DNA MER1_type 1 75 -2342 4658 229 124 38 chrX 41418142 41418346 -135555794 + Charlie8 DNA MER1_type 61 246 -2171 2437 175 50 63 chrX 41418346 41418945 -135555195 + MLT1E LTR MaLR 3 593 0 4658 229 124 38 chrX 41418945 41419191 -135554949 + Charlie8 DNA MER1_type 246 470 -1947 2497 54 3 0 chrX 41419191 41419485 -135554655 + AluSp SINE Alu 1 295 -18 4658 229 124 38 chrX 41419485 41419875 -135554265 + Charlie8 DNA MER1_type 470 825 -1592 872 163 20 56 chrX 41419875 41420071 -135554069 + MER5A DNA MER1_type 1 189 0 4658 229 124 38 chrX 41420071 41421112 -135553028 + Charlie8 DNA MER1_type 825 2105 -312 1614 144 44 54 chrX 41421319 41421617 -135552523 - AluJo SINE Alu -17 295 1 227 240 93 0 chrX 41421621 41421696 -135552444 + Charlie8 DNA MER1_type 2320 2401 -16 204 138 0 0 chrX 41422044 41422073 -135552067 - MIR SINE MIR -115 147 119 2254 85 17 3 chrX 41422306 41422600 -135551540 + AluSq SINE Alu 1 298 -15 187 292 0 0 chrX 41423236 41423284 -135550856 - L2 LINE L2 -9 3263 3216 1624 158 27 37 chrX 41423430 41423727 -135550413 - AluJb SINE Alu -18 294 1 471 261 84 74 chrX 41423731 41423934 -135550206 + MIR SINE MIR 20 224 -38 367 209 52 43 chrX 41423950 41424065 -135550075 + L2 LINE L2 3189 3304 -9 435 202 37 55 chrX 41424076 41424185 -135549955 - L2 LINE L2 -20 3293 3187 1713 184 21 0 chrX 41424304 41424592 -135549548 + AluJb SINE Alu 1 294 -18 2339 89 0 10 chrX 41424750 41425054 -135549086 - AluSg SINE Alu -9 301 1 182 200 0 22 chrX 41425200 41425245 -135548895 + L2 LINE L2 3267 3310 -3 413 257 35 26 chrX 41425584 41425697 -135548443 + MER5A DNA MER1_type 13 126 -63 1417 247 64 59 chrX 41426053 41426628 -135547512 - L1MC4a LINE L1 -1889 5919 5342 2244 125 0 0 chrX 41426932 41427244 -135546896 - AluSx SINE Alu 0 312 1 244 230 40 14 chrX 41427268 41427342 -135546798 - L1P LINE L1 -1170 4976 4901 671 223 82 31 chrX 41427374 41427692 -135546448 + L1MC5 LINE L1 7452 7785 -176 * 5060 112 12 9 chrX 41427678 41428488 -135545652 + L1MB2 LINE L1 5357 6169 -2 2342 82 3 0 chrX 41428507 41428800 -135545340 + AluSx SINE Alu 1 294 -18 276 30 0 0 chrX 41428821 41428854 -135545286 + (CA)n Simple_repeat Simple_repeat 2 34 0 4042 166 26 5 chrX 41429060 41429841 -135544299 - L1MB7 LINE L1 -19 6165 5369 513 231 119 25 chrX 41429845 41430005 -135544135 + MIR SINE MIR 71 245 -17 374 259 107 9 chrX 41430603 41430715 -135543425 + MIR3 SINE MIR 36 158 -50 273 314 18 83 chrX 41430717 41431186 -135542954 - MER5B DNA MER1_type 0 178 21 288 304 6 95 chrX 41430740 41430807 -135543333 + MER5A DNA MER1_type 35 106 -83 2212 123 0 0 chrX 41430807 41431108 -135543032 + AluSx SINE Alu 1 301 -11 288 304 6 95 chrX 41431108 41431208 -135542932 + MER5A DNA MER1_type 106 187 -2 424 309 70 29 chrX 41431333 41431536 -135542604 + MIR SINE MIR 44 250 -12 452 186 307 21 chrX 41431875 41432015 -135542125 + MIR SINE MIR 25 204 -58 391 268 80 58 chrX 41432242 41432380 -135541760 + MIR SINE MIR 6 146 -62 894 117 15 44 chrX 41432836 41432973 -135541167 + FLAM_C SINE Alu 1 133 0 2316 110 0 0 chrX 41433951 41434252 -135539888 - AluSx SINE Alu -11 301 1 424 265 123 37 chrX 41434435 41434597 -135539543 + MIR SINE MIR 87 262 0 494 296 82 29 chrX 41434605 41434811 -135539329 + MIR SINE MIR 2 218 -44 1668 124 24 8 chrX 41484882 41485132 -135489008 + AluSx SINE Alu 59 312 0 2908 126 56 0 chrX 41485145 41485489 -135488651 - L1PB4 LINE L1 -4 6152 5776 288 0 0 0 chrX 41485489 41485521 -135488619 + (TG)n Simple_repeat Simple_repeat 2 33 0 2908 126 56 0 chrX 41485521 41485620 -135488520 - L1PB4 LINE L1 -380 5776 5684 2478 58 13 26 chrX 41485621 41485931 -135488209 - AluSp SINE Alu -7 306 1 5539 176 20 32 chrX 41485954 41486093 -135488047 - L1MB7 LINE L1 -897 5249 5110 2308 80 7 0 chrX 41486093 41486381 -135487759 - AluSx SINE Alu -22 290 1 5539 176 20 32 chrX 41486381 41486515 -135487625 - L1MB7 LINE L1 -1036 5110 4976 2367 93 0 13 chrX 41486515 41486690 -135487450 - AluSp SINE Alu -5 308 137 2580 71 0 0 chrX 41486690 41486999 -135487141 - AluY SINE Alu -2 309 1 2367 93 0 13 chrX 41486999 41487135 -135487005 - AluSp SINE Alu -176 137 1 2156 121 3 0 chrX 41487135 41487424 -135486716 - AluSx SINE Alu -22 290 1 5539 176 20 32 chrX 41487424 41488323 -135485817 - L1MB7 LINE L1 -1168 4978 4090 1740 139 20 57 chrX 41488329 41488485 -135485655 - AluJo SINE Alu -22 290 149 2262 98 0 0 chrX 41488485 41488780 -135485360 - AluSx SINE Alu -17 295 1 1740 139 20 57 chrX 41488780 41488924 -135485216 - AluJo SINE Alu -163 149 1 236 211 76 108 chrX 41488949 41489134 -135485006 - L1MC4 LINE L1 0 8042 7864 425 269 65 40 chrX 41489156 41489270 -135484870 - L1M4 LINE L1 -979 5167 5057 2110 79 101 0 chrX 41489270 41489547 -135484593 + AluY SINE Alu 1 305 -6 425 269 65 40 chrX 41489547 41489707 -135484433 - L1M4 LINE L1 -1089 5057 4886 1026 57 16 0 chrX 41489732 41489856 -135484284 - AluSg/x SINE Alu -20 290 165 283 91 36 36 chrX 41489856 41489911 -135484229 - MSTC-int LTR MaLR -1679 56 2 1969 130 26 10 chrX 41489913 41490220 -135483920 - AluJb SINE Alu 0 312 1 2138 114 157 24 chrX 41490220 41490596 -135483544 - MSTC LTR MaLR -2 426 1 2318 75 14 17 chrX 41490616 41490909 -135483231 - AluSc SINE Alu -17 292 1 626 169 25 157 chrX 41490909 41491151 -135482989 - L1M4 LINE L1 -1483 4663 4454 2394 87 0 26 chrX 41492416 41492727 -135481413 + AluSx SINE Alu 1 303 -9 15188 60 12 3 chrX 41492728 41494888 -135479252 + L1P2 LINE L1 3419 5589 -565 2201 128 0 0 chrX 41494978 41495282 -135478858 - AluSx SINE Alu -3 309 6 2219 105 0 7 chrX 41495418 41495712 -135478428 - AluSx SINE Alu -20 292 1 196 253 105 11 chrX 41495852 41495947 -135478193 - MIR SINE MIR -112 150 47 709 273 72 44 chrX 41496092 41496521 -135477619 + L1M4 LINE L1 4405 4845 -1301 2316 68 17 14 chrX 41496539 41496833 -135477307 + AluSx SINE Alu 1 295 -17 2138 114 157 24 chrX 41496853 41497229 -135476911 + MSTC LTR MaLR 1 426 -2 1980 129 26 7 chrX 41497229 41497531 -135476609 + AluJb SINE Alu 1 308 -4 4560 251 47 36 chrX 41497531 41498852 -135475288 + MSTC-int LTR MaLR 6 1340 -311 1525 145 64 57 chrX 41498879 41499034 -135475106 - AluJo SINE Alu -7 305 153 234 62 0 0 chrX 41499034 41499066 -135475074 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2281 75 0 7 chrX 41499066 41499348 -135474792 - AluY SINE Alu -31 280 1 1525 145 64 57 chrX 41499348 41499474 -135474666 - AluJo SINE Alu -158 154 21 296 100 20 20 chrX 41499484 41499534 -135474606 + MSTC-int LTR MaLR 1495 1544 -191 469 111 0 0 chrX 41499545 41499617 -135474523 + MSTC LTR MaLR 353 424 -4 2481 152 57 120 chrX 41499618 41500254 -135473886 + L1M4 LINE L1 4658 5333 -851 1682 180 7 10 chrX 41500254 41500543 -135473597 + AluJo SINE Alu 13 300 -12 2481 152 57 120 chrX 41500543 41500638 -135473502 + L1M4 LINE L1 5333 5432 -752 2195 87 11 0 chrX 41500638 41500939 -135473201 + AluSg SINE Alu 1 304 0 2481 152 57 120 chrX 41500939 41501216 -135472924 + L1M4 LINE L1 5432 5721 -463 2489 87 3 0 chrX 41501216 41501528 -135472612 + AluSq SINE Alu 1 313 0 2499 43 0 0 chrX 41501531 41501842 -135472298 + AluY SINE Alu 1 311 0 337 186 0 17 chrX 41502142 41502201 -135471939 - Alu SINE Alu -246 53 1 924 252 63 37 chrX 41502641 41503022 -135471118 + L1ME4a LINE L1 5524 5914 -207 2293 118 0 0 chrX 41503124 41503428 -135470712 - AluSx SINE Alu -8 304 1 2236 116 3 0 chrX 41503601 41503904 -135470236 + AluSq SINE Alu 1 304 -9 1517 166 72 28 chrX 41503910 41504200 -135469940 + AluJb SINE Alu 1 303 -9 241 206 48 32 chrX 41504382 41504445 -135469695 - L2 LINE L2 0 3272 3209 976 137 18 96 chrX 41504462 41504635 -135469505 - AluJb SINE Alu 0 309 157 2384 73 0 26 chrX 41504635 41504938 -135469202 - AluSg SINE Alu -15 295 1 976 137 18 96 chrX 41504938 41505009 -135469131 - AluJb SINE Alu -152 157 82 303 275 33 95 chrX 41505010 41505158 -135468982 - MIR SINE MIR -51 211 78 2552 64 0 22 chrX 41505158 41505472 -135468668 + AluY SINE Alu 1 307 -4 303 275 33 95 chrX 41505472 41505534 -135468606 - MIR SINE MIR -184 78 14 346 266 158 20 chrX 41506529 41506732 -135467408 - L1M4 LINE L1 -3442 2704 2474 204 125 0 0 chrX 41506988 41507020 -135467120 + (CCCCCT)n Simple_repeat Simple_repeat 2 33 0 2028 118 0 4 chrX 41507023 41507294 -135466846 - AluSx SINE Alu -42 270 1 590 276 6 41 chrX 41507313 41507516 -135466624 - MIR SINE MIR -62 146 5 270 328 77 92 chrX 41507635 41508090 -135466050 + L2 LINE L2 2825 3272 0 675 214 7 7 chrX 41508658 41508798 -135465342 + MIR SINE MIR 2 141 -121 2263 150 27 77 chrX 41508804 41509047 -135465093 - MSTB1 LTR MaLR -4 428 215 2255 76 7 4 chrX 41509047 41509323 -135464817 + AluSq SINE Alu 23 299 -14 2263 150 27 77 chrX 41509323 41509520 -135464620 - MSTB1 LTR MaLR -217 215 10 221 192 0 39 chrX 41509530 41509582 -135464558 + MIR SINE MIR 175 224 -38 2304 89 10 0 chrX 41509587 41509880 -135464260 - AluSp SINE Alu -17 296 1 21 36 0 0 chrX 41510336 41510364 -135463776 + AT_rich Low_complexity Low_complexity 1 28 0 666 149 0 90 chrX 41510436 41510503 -135463637 - MSTB1 LTR MaLR 0 432 381 2177 131 0 0 chrX 41510503 41510793 -135463347 - AluSx SINE Alu -22 290 1 666 149 0 90 chrX 41510793 41510859 -135463281 - MSTB1 LTR MaLR -51 381 311 227 292 0 0 chrX 41510859 41510924 -135463216 - L1ME LINE L1 -484 5637 5573 2373 112 0 6 chrX 41510937 41511251 -135462889 - AluSx SINE Alu 0 312 1 2041 94 0 0 chrX 41512235 41512491 -135461649 - AluSc SINE Alu -17 292 37 1053 197 0 49 chrX 41512694 41512778 -135461362 + MER58A DNA MER1_type 32 119 -2301 2376 106 0 3 chrX 41512778 41513089 -135461051 - AluSx SINE Alu -2 310 1 1053 197 0 49 chrX 41513089 41513207 -135460933 + MER58A DNA MER1_type 119 224 0 2266 95 3 0 chrX 41513960 41514255 -135459885 - AluSq SINE Alu -17 296 13 224 233 0 0 chrX 41514675 41514718 -135459422 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1056 95 0 7 chrX 41514864 41515011 -135459129 - AluSp SINE Alu -166 147 2 1791 133 10 13 chrX 41515540 41515840 -135458300 + AluSx SINE Alu 1 299 -13 1569 151 48 7 chrX 41515924 41516080 -135458060 - AluJo SINE Alu -30 282 109 477 0 0 0 chrX 41516080 41516133 -135458007 + (TG)n Simple_repeat Simple_repeat 1 53 0 1569 151 48 7 chrX 41516133 41516247 -135457893 - AluJo SINE Alu -203 109 1 2080 117 3 7 chrX 41516431 41516731 -135457409 - AluSx SINE Alu -13 299 1 2190 111 0 0 chrX 41516858 41517156 -135456984 + AluSx SINE Alu 1 298 -14 241 180 80 0 chrX 41517200 41517250 -135456890 - L2 LINE L2 0 3272 3219 2136 98 0 16 chrX 41517361 41517666 -135456474 - AluSx SINE Alu -12 300 1 2087 127 0 6 chrX 41517763 41518077 -135456063 - AluSx SINE Alu 0 312 1 1795 174 0 13 chrX 41518363 41518679 -135455461 - AluJb SINE Alu 0 312 1 2147 101 10 10 chrX 41518682 41518990 -135455150 - AluSq SINE Alu -5 308 1 2240 78 7 0 chrX 41519758 41520051 -135454089 - AluSp SINE Alu -18 295 1 296 48 24 0 chrX 41520084 41520126 -135454014 + (TC)n Simple_repeat Simple_repeat 1 43 0 1512 151 21 35 chrX 41520126 41520278 -135453862 - AluJb SINE Alu -32 280 132 2085 69 4 7 chrX 41520278 41520554 -135453586 - AluY SINE Alu -1 310 36 1512 151 21 35 chrX 41520554 41520685 -135453455 - AluJb SINE Alu -180 132 1 203 328 16 0 chrX 41520842 41520906 -135453234 - MIR SINE MIR -1 261 197 2736 7 0 0 chrX 41521325 41521630 -135452510 + AluY SINE Alu 1 305 -6 492 301 0 57 chrX 41521802 41521880 -135452260 - MIR SINE MIR -42 220 139 1574 139 93 11 chrX 41521880 41522160 -135451980 - AluJb SINE Alu -9 303 1 492 301 0 57 chrX 41522160 41522310 -135451830 - MIR SINE MIR -123 139 5 193 329 41 27 chrX 41522316 41522389 -135451751 - MIR SINE MIR -182 80 7 1781 145 0 0 chrX 41522496 41522758 -135451382 - AluJo SINE Alu -48 264 3 636 206 35 21 chrX 41522766 41522907 -135451233 - MIR SINE MIR -10 252 110 1627 135 38 4 chrX 41523210 41523477 -135450663 - AluSx SINE Alu 0 312 37 2058 69 8 0 chrX 41523477 41523737 -135450403 - AluSq SINE Alu -51 262 1 2187 76 7 10 chrX 41523752 41524053 -135450087 - AluSg SINE Alu -10 300 1 796 217 31 12 chrX 41524205 41524366 -135449774 + MIR SINE MIR 24 187 -75 1658 158 0 0 chrX 41524395 41524655 -135449485 - AluJb SINE Alu -13 299 40 187 179 45 0 chrX 41524656 41524696 -135449444 + MIR SINE MIR 116 157 -105 2224 69 10 0 chrX 41524865 41525153 -135448987 + AluSp SINE Alu 12 302 -11 556 294 94 5 chrX 41525234 41525435 -135448705 + MIR SINE MIR 2 220 -42 1867 150 0 0 chrX 41525444 41525738 -135448402 + AluJb SINE Alu 1 294 -18 1974 124 3 7 chrX 41525838 41526136 -135448004 + AluSx SINE Alu 1 297 -15 29 0 0 0 chrX 41527135 41527164 -135446976 + AT_rich Low_complexity Low_complexity 1 29 0 578 143 8 0 chrX 41527368 41527487 -135446653 + (TG)n Simple_repeat Simple_repeat 1 120 0 210 171 0 0 chrX 41527541 41527582 -135446558 + (TATG)n Simple_repeat Simple_repeat 4 44 0 417 86 0 0 chrX 41527582 41527640 -135446500 + (CATA)n Simple_repeat Simple_repeat 2 59 0 543 69 0 0 chrX 41530725 41530797 -135443343 + (CTATT)n Simple_repeat Simple_repeat 4 75 0 317 330 105 60 chrX 41531401 41531734 -135442406 + L2 LINE L2 2281 2628 -686 279 259 200 0 chrX 41532239 41532324 -135441816 + L2 LINE L2 3170 3271 -1 478 260 167 23 chrX 41532829 41533043 -135441097 - MIR SINE MIR -13 249 12 251 256 0 39 chrX 41533382 41533460 -135440680 - MIR SINE MIR -12 250 176 520 178 119 17 chrX 41533492 41533610 -135440530 - MLT1I LTR MaLR 0 409 280 2235 85 3 0 chrX 41533659 41533954 -135440186 + AluSp SINE Alu 2 297 -16 2689 10 7 0 chrX 41533955 41534262 -135439878 + AluYa5 SINE Alu 1 309 -2 2051 88 3 29 chrX 41534288 41534595 -135439545 - AluSq SINE Alu -14 299 1 503 125 0 0 chrX 41534598 41534670 -135439470 + U3 snRNA snRNA 1 72 -145 495 289 75 11 chrX 41534703 41534890 -135439250 - MLT1I LTR MaLR -203 206 8 264 186 221 12 chrX 41535103 41535189 -135438951 + MIR SINE MIR 158 261 -1 1973 119 3 3 chrX 41535623 41535916 -135438224 - AluSx SINE Alu -15 297 5 495 251 76 76 chrX 41536173 41536240 -135437900 + MER5A DNA MER1_type 10 76 -113 2200 95 0 7 chrX 41536240 41536535 -135437605 + AluSx SINE Alu 1 293 -19 495 251 76 76 chrX 41536535 41536582 -135437558 + MER5A DNA MER1_type 76 122 -67 2428 67 0 0 chrX 41536582 41536882 -135437258 - AluY SINE Alu -11 300 1 495 251 76 76 chrX 41536882 41536937 -135437203 + MER5A DNA MER1_type 121 180 -9 1638 140 14 14 chrX 41536948 41537233 -135436907 + AluJo SINE Alu 11 295 -17 193 271 21 0 chrX 41537316 41537364 -135436776 + MER5B DNA MER1_type 1 49 -129 2098 123 0 0 chrX 41537430 41537732 -135436408 + AluSx SINE Alu 1 302 -10 2328 76 0 0 chrX 41537741 41538042 -135436098 + AluY SINE Alu 11 311 0 21 0 0 0 chrX 41538101 41538122 -135436018 + AT_rich Low_complexity Low_complexity 1 21 0 769 135 0 0 chrX 41538131 41538242 -135435898 - FLAM_C SINE Alu -20 123 13 1852 134 7 3 chrX 41538248 41538539 -135435601 - AluJb SINE Alu -16 296 5 748 83 37 0 chrX 41538604 41538713 -135435427 - L1PB1 LINE L1 0 6151 6039 2177 78 10 36 chrX 41538716 41538887 -135435253 - AluSq SINE Alu -14 299 138 2203 95 3 3 chrX 41538887 41539193 -135434947 - AluSx SINE Alu -6 306 1 2177 78 10 36 chrX 41539193 41539328 -135434812 - AluSq SINE Alu -175 138 1 546 225 150 0 chrX 41539340 41539513 -135434627 - L1MC/D LINE L1 -1991 5817 5619 277 146 0 0 chrX 41539513 41539554 -135434586 - MLT1L LTR MaLR 0 615 575 838 157 21 120 chrX 41539668 41539730 -135434410 + MER5A DNA MER1_type 18 85 -104 2073 106 3 22 chrX 41539730 41540042 -135434098 + AluSx SINE Alu 4 309 -3 838 157 21 120 chrX 41540042 41540170 -135433970 + MER5A DNA MER1_type 85 189 0 339 298 34 62 chrX 41540180 41540358 -135433782 - MLT1K LTR MaLR -230 358 186 187 68 91 0 chrX 41540517 41540561 -135433579 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 617 290 76 20 chrX 41540561 41540864 -135433276 - L1MC/D LINE L1 -2219 5589 5270 2313 106 0 0 chrX 41540876 41541188 -135432952 - AluSx SINE Alu 0 312 1 306 301 88 47 chrX 41541220 41541390 -135432750 - L1MC/D LINE L1 -888 5258 5096 2019 108 10 24 chrX 41541390 41541685 -135432455 + AluSx SINE Alu 1 291 -21 306 301 88 47 chrX 41541685 41541959 -135432181 - L1MC/D LINE L1 -1050 5096 4796 1148 115 0 0 chrX 41541963 41542128 -135432012 - AluSp SINE Alu -1 312 148 1491 104 0 0 chrX 41542128 41542330 -135431810 - AluSx SINE Alu -110 202 1 1171 132 0 0 chrX 41542384 41542558 -135431582 - AluJb SINE Alu -13 299 126 2342 77 3 0 chrX 41542559 41542858 -135431282 - AluSp SINE Alu -13 300 1 822 153 22 29 chrX 41542998 41543135 -135431005 + AluJo SINE Alu 2 137 -175 238 162 27 0 chrX 41543194 41543231 -135430909 + Alu SINE Alu 1 38 -264 1676 91 0 9 chrX 41543231 41543461 -135430679 - AluSq SINE Alu -85 228 1 796 222 132 31 chrX 41543619 41543907 -135430233 - L2 LINE L2 -71 3242 2926 747 283 88 59 chrX 41543910 41544386 -135429754 + L1MC4a LINE L1 4982 5443 -678 1936 142 3 0 chrX 41544386 41544696 -135429444 + AluSq SINE Alu 1 311 -2 747 283 88 59 chrX 41544696 41544806 -135429334 + L1MC4a LINE L1 5443 5548 -573 2342 59 0 0 chrX 41544806 41545096 -135429044 - AluY SINE Alu -7 304 15 747 283 88 59 chrX 41545096 41545317 -135428823 + L1MC4a LINE L1 5548 5757 -364 2219 88 0 0 chrX 41545317 41545611 -135428529 + AluSc SINE Alu 1 294 -15 747 283 88 59 chrX 41545611 41545676 -135428464 + L1MC4a LINE L1 5757 5819 -302 373 195 0 125 chrX 41545884 41545964 -135428176 - MER45 DNA AcHobo -2 1579 1519 2271 101 0 0 chrX 41545964 41546271 -135427869 + AluSx SINE Alu 1 307 -5 373 195 0 125 chrX 41546271 41546318 -135427822 - MER45 DNA AcHobo -62 1519 1468 2962 58 0 0 chrX 41546320 41546667 -135427473 + L1P LINE L1 7 353 -5793 * 3069 36 3 0 chrX 41546662 41547023 -135427117 + L1P LINE L1 3455 3816 -2330 2031 25 0 0 chrX 41547023 41547248 -135426892 + L1PA4 LINE L1 5917 6152 -3 1785 118 3 46 chrX 41547272 41547576 -135426564 + AluSx SINE Alu 1 291 -21 737 133 172 0 chrX 41547581 41547686 -135426454 - MER45R DNA AcHobo -107 1474 1388 2093 119 0 0 chrX 41547686 41547981 -135426159 - AluSx SINE Alu -16 296 2 737 133 172 0 chrX 41547981 41548078 -135426062 - MER45R DNA AcHobo -193 1388 1237 2190 86 0 3 chrX 41548078 41548369 -135425771 - AluSp SINE Alu -14 299 10 2336 66 7 10 chrX 41548381 41548686 -135425454 - AluSq SINE Alu -9 304 1 1282 143 0 36 chrX 41548693 41548917 -135425223 - AluJo SINE Alu -15 297 82 233 56 0 28 chrX 41548919 41548955 -135425185 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1466 178 7 25 chrX 41548955 41549241 -135424899 - AluJo SINE Alu -31 281 1 4013 184 60 8 chrX 41549241 41550012 -135424128 - MER45R DNA AcHobo -770 811 1 702 267 40 8 chrX 41550193 41550444 -135423696 + MIR SINE MIR 4 262 0 804 277 147 23 chrX 41551337 41551361 -135422779 + L2 LINE L2 2919 2939 -374 2353 74 0 0 chrX 41551361 41551657 -135422483 - AluY SINE Alu -15 296 1 804 277 147 23 chrX 41551657 41551979 -135422161 + L2 LINE L2 2939 3308 -5 520 296 57 0 chrX 41551983 41552142 -135421998 + L2 LINE L2 3146 3313 0 194 363 97 17 chrX 41552144 41552433 -135421707 + L2 LINE L2 2316 2627 -687 830 216 196 4 chrX 41552450 41552695 -135421445 + MER69 DNA AcHobo 17 308 -918 812 107 25 16 chrX 41552724 41552846 -135421294 - AluJb SINE Alu -189 123 1 246 216 148 23 chrX 41552850 41552938 -135421202 + MER69 DNA AcHobo 304 402 -824 * 384 122 47 131 chrX 41552936 41552968 -135421172 + MER69 DNA AcHobo 2422 2455 -71 2092 105 0 0 chrX 41552968 41553263 -135420877 - AluSg SINE Alu -15 295 1 384 122 47 131 chrX 41553263 41553337 -135420803 + MER69 DNA AcHobo 2455 2519 -7 1332 161 104 7 chrX 41553341 41553620 -135420520 + AluJo SINE Alu 7 312 0 186 167 0 0 chrX 41554324 41554360 -135419780 + CT-rich Low_complexity Low_complexity 2 37 0 2198 91 13 0 chrX 41557246 41557555 -135416585 - AluSp SINE Alu 0 313 1 315 340 9 0 chrX 41557635 41557741 -135416399 + MIR SINE MIR 37 143 -65 2204 101 0 16 chrX 41558161 41558477 -135415663 - AluSx SINE Alu 0 312 2 203 316 74 21 chrX 41558584 41558679 -135415461 - MIR SINE MIR -5 257 158 355 344 97 32 chrX 41558752 41558999 -135415141 + L2 LINE L2 2715 2977 -337 369 245 75 9 chrX 41559138 41559244 -135414896 + L2 LINE L2 3201 3313 0 259 249 141 65 chrX 41559484 41559866 -135414274 - L1ME4a LINE L1 -2 6119 5709 2235 99 3 0 chrX 41560419 41560721 -135413419 - AluSg SINE Alu -7 303 1 182 246 217 0 chrX 41560802 41560871 -135413269 - MIR SINE MIR -82 180 97 520 243 27 9 chrX 41561001 41561112 -135413028 - MER5A DNA MER1_type 0 189 77 405 230 310 0 chrX 41561344 41561457 -135412683 + MER5A DNA MER1_type 42 189 0 190 250 238 36 chrX 41561615 41561699 -135412441 + MIR SINE MIR 28 128 -134 1165 225 109 50 chrX 41561803 41562045 -135412095 - L1M4 LINE L1 -2631 3515 3289 1922 132 3 10 chrX 41562045 41562341 -135411799 + AluJb SINE Alu 17 310 -2 1165 225 109 50 chrX 41562341 41562554 -135411586 - L1M4 LINE L1 -2857 3289 3019 2249 79 30 3 chrX 41562554 41562859 -135411281 - AluSq SINE Alu 0 313 1 1165 225 109 50 chrX 41562859 41562961 -135411179 - L1M4 LINE L1 -3127 3019 2924 435 128 0 0 chrX 41562975 41563053 -135411087 - Alu SINE Alu -1 309 232 1822 115 4 0 chrX 41763053 41763305 -135210835 + AluSx SINE Alu 59 311 -1 1064 163 12 0 chrX 41763306 41763478 -135210662 + AluSg/x SINE Alu 120 293 -19 2540 60 3 3 chrX 41763481 41763780 -135210360 + AluY SINE Alu 1 299 -12 25 31 0 0 chrX 41763817 41763849 -135210291 + AT_rich Low_complexity Low_complexity 1 32 0 2176 103 0 4 chrX 41763849 41764130 -135210010 + AluSx SINE Alu 1 280 -32 252 0 0 0 chrX 41764130 41764158 -135209982 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 703 211 160 9 chrX 41764314 41764527 -135209613 - MIR SINE MIR -11 251 7 2303 98 27 0 chrX 41765042 41765337 -135208803 + AluSx SINE Alu 1 303 -9 239 315 16 8 chrX 41765452 41765579 -135208561 + GA-rich Low_complexity Low_complexity 2 129 0 2489 80 3 0 chrX 41765650 41765950 -135208190 + AluSx SINE Alu 1 301 -11 283 336 9 26 chrX 41766051 41766164 -135207976 + L2 LINE L2 3146 3256 -16 * 487 279 56 0 chrX 41766149 41766310 -135207830 - MIR SINE MIR -12 250 81 251 280 38 89 chrX 41766537 41766694 -135207446 - L2 LINE L2 -94 3178 3030 506 165 0 0 chrX 41766711 41766790 -135207350 + MER69 DNA AcHobo 1 79 -2447 * 978 196 75 8 chrX 41766787 41767022 -135207118 + MER69 DNA AcHobo 1937 2193 -333 2136 119 7 0 chrX 41767022 41767317 -135206823 - AluJo SINE Alu -15 297 1 978 196 75 8 chrX 41767317 41767347 -135206793 + MER69 DNA AcHobo 2193 2220 -306 291 306 200 44 chrX 41767355 41767555 -135206585 + L2 LINE L2 1399 1567 -1747 267 31 0 0 chrX 41767555 41767587 -135206553 + (TC)n Simple_repeat Simple_repeat 2 33 0 291 306 200 44 chrX 41767587 41767746 -135206394 + L2 LINE L2 1567 1814 -1500 35 63 0 0 chrX 41767821 41767884 -135206256 + AT_rich Low_complexity Low_complexity 1 63 0 468 244 150 53 chrX 41768098 41768261 -135205879 - L1ME3A LINE L1 -219 5951 5751 2232 92 14 3 chrX 41768261 41768553 -135205587 + AluSq SINE Alu 1 295 -18 468 244 150 53 chrX 41768553 41768655 -135205485 - L1ME3A LINE L1 -419 5751 5660 2502 110 116 13 chrX 41768670 41769143 -135204997 - Charlie1b DNA MER1_type -1 522 1 571 182 59 10 chrX 41769143 41769289 -135204851 - L1ME3A LINE L1 -506 5656 5506 1631 267 161 25 chrX 41769291 41769443 -135204697 + L2 LINE L2 1848 1978 -1336 2779 39 0 0 chrX 41769443 41769750 -135204390 - AluY SINE Alu -2 309 3 1631 267 161 25 chrX 41769750 41770391 -135203749 + L2 LINE L2 1978 2749 -565 2315 103 7 0 chrX 41770541 41770843 -135203297 - AluSx SINE Alu -8 304 1 874 281 57 72 chrX 41770914 41771490 -135202650 + L2 LINE L2 2742 3307 -6 * 1694 298 189 54 chrX 41771487 41771759 -135202381 - L2 LINE L2 -250 3022 2788 189 0 0 0 chrX 41771759 41771780 -135202360 + (TA)n Simple_repeat Simple_repeat 2 22 0 2329 84 20 0 chrX 41771780 41772078 -135202062 - AluSx SINE Alu -8 304 1 1694 298 189 54 chrX 41772078 41772600 -135201540 - L2 LINE L2 -484 2788 2338 1890 112 0 0 chrX 41772600 41772850 -135201290 + AluSx SINE Alu 56 305 -7 1694 298 189 54 chrX 41772850 41773079 -135201061 - L2 LINE L2 -934 2338 2141 2035 89 79 7 chrX 41773079 41773359 -135200781 + AluSg SINE Alu 1 300 -10 1694 298 189 54 chrX 41773359 41774069 -135200071 - L2 LINE L2 -1131 2141 994 243 88 0 0 chrX 41774603 41774637 -135199503 + (TCCCC)n Simple_repeat Simple_repeat 3 36 0 37 52 0 0 chrX 41774857 41774915 -135199225 + GC_rich Low_complexity Low_complexity 1 58 0 201 175 0 0 chrX 41774945 41774985 -135199155 + (CTG)n Simple_repeat Simple_repeat 1 40 0 959 213 54 5 chrX 41775838 41776059 -135198081 - MIR SINE MIR -11 251 20 182 345 42 81 chrX 41776074 41776358 -135197782 - L2 LINE L2 -2075 1239 967 1343 268 48 22 chrX 41776923 41777337 -135196803 + L2 LINE L2 2886 3310 -3 180 219 0 0 chrX 41777357 41777398 -135196742 + L2 LINE L2 3271 3311 -2 362 250 80 30 chrX 41777706 41777806 -135196334 + MIR SINE MIR 39 143 -65 24 32 0 0 chrX 41777874 41777905 -135196235 + AT_rich Low_complexity Low_complexity 1 31 0 385 294 65 13 chrX 41778803 41778956 -135195184 + MER5B DNA MER1_type 17 177 -1 834 303 62 26 chrX 41779503 41779972 -135194168 - L2 LINE L2 -541 2773 2288 533 176 117 88 chrX 41779997 41780236 -135193904 - L1ME4a LINE L1 -100 6021 5776 6144 87 19 20 chrX 41780236 41781000 -135193140 - L1PA15 LINE L1 -3 6162 5399 2092 104 48 10 chrX 41781000 41781289 -135192851 - AluSx SINE Alu -12 300 1 6144 87 19 20 chrX 41781289 41781970 -135192170 - L1PA15 LINE L1 -766 5399 4719 2465 65 0 0 chrX 41781970 41782285 -135191855 - AluY SINE Alu 0 311 1 2505 68 0 19 chrX 41782289 41782598 -135191542 - AluSg SINE Alu 0 310 8 2300 94 0 0 chrX 41782603 41782921 -135191219 - AluSx SINE Alu 0 318 1 6144 87 19 20 chrX 41782921 41783142 -135190998 - L1PA15 LINE L1 -1453 4712 4488 262 276 53 0 chrX 41783144 41783220 -135190920 - L2 LINE L2 -1013 2301 2222 985 144 0 0 chrX 41783419 41783558 -135190582 + AluSg/x SINE Alu 135 273 -37 2234 106 13 19 chrX 41783570 41783882 -135190258 - AluSg SINE Alu 0 310 1 2174 136 0 10 chrX 41783908 41784043 -135190097 + AluSx SINE Alu 1 136 -176 2476 68 3 0 chrX 41784043 41784335 -135189805 + AluSc SINE Alu 1 293 -16 2174 136 0 10 chrX 41784335 41784509 -135189631 + AluSx SINE Alu 136 307 -5 2568 62 0 0 chrX 41784517 41784808 -135189332 + AluSc SINE Alu 2 292 -17 1922 164 0 7 chrX 41784818 41785123 -135189017 + AluJo SINE Alu 1 303 -9 206 303 53 0 chrX 41785964 41786040 -135188100 + MIR SINE MIR 60 139 -69 834 271 159 17 chrX 41786136 41786487 -135187653 - L2 LINE L2 0 3272 2872 301 362 73 15 chrX 41786648 41786977 -135187163 - L2 LINE L2 -709 2605 2258 230 293 12 37 chrX 41787185 41787267 -135186873 + C-rich Low_complexity Low_complexity 2 81 0 564 246 40 35 chrX 41787466 41787685 -135186455 + MIR SINE MIR 26 250 -12 237 261 51 14 chrX 41787763 41787901 -135186239 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 321 155 0 0 chrX 41788316 41788374 -135185766 + (TG)n Simple_repeat Simple_repeat 1 58 0 601 238 153 16 chrX 41788992 41789181 -135184959 + MIR SINE MIR 29 243 -19 621 233 5 85 chrX 41789595 41789637 -135184503 + Charlie8 DNA MER1_type 103 147 -194 2366 109 0 0 chrX 41789637 41789940 -135184200 + AluSx SINE Alu 1 303 -9 621 233 5 85 chrX 41789940 41790086 -135184054 + Charlie8 DNA MER1_type 147 276 -65 288 229 14 0 chrX 41791134 41791204 -135182936 - MIR SINE MIR -72 136 66 458 305 7 14 chrX 41791939 41792080 -135182060 - MIR SINE MIR -105 157 18 427 149 33 159 chrX 41792393 41792462 -135181678 + MER53 DNA DNA 3 79 -110 2291 97 0 0 chrX 41792462 41792751 -135181389 - AluSg SINE Alu -21 289 1 427 149 33 159 chrX 41792751 41792860 -135181280 + MER53 DNA DNA 79 152 -37 2327 102 3 0 chrX 41792860 41793155 -135180985 + AluSq SINE Alu 1 296 -17 427 149 33 159 chrX 41793155 41793189 -135180951 + MER53 DNA DNA 152 189 0 794 181 0 0 chrX 41793617 41793750 -135180390 + FLAM_A SINE Alu 1 133 0 1757 183 7 0 chrX 41793941 41794231 -135179909 + AluJo SINE Alu 5 296 -16 2343 87 10 0 chrX 41794477 41794803 -135179337 - AluSp SINE Alu 0 313 1 279 247 14 0 chrX 41795280 41795353 -135178787 + MIR SINE MIR 72 145 -63 1096 215 57 79 chrX 41796459 41796599 -135177541 + MER2 DNA MER2_type 1 143 -202 2209 98 17 0 chrX 41796599 41796886 -135177254 - AluSx SINE Alu -20 292 1 1096 215 57 79 chrX 41796886 41797098 -135177042 + MER2 DNA MER2_type 143 345 0 1984 172 0 0 chrX 41798285 41798593 -135175547 - AluJb SINE Alu -4 308 1 1776 90 0 0 chrX 41799562 41799774 -135174366 - AluSc SINE Alu -11 298 87 243 103 0 0 chrX 41800488 41800527 -135173613 + (GGA)n Simple_repeat Simple_repeat 1 39 0 209 139 14 178 chrX 41800679 41800764 -135173376 + MIR SINE MIR 74 139 -69 519 279 67 22 chrX 41801276 41801455 -135172685 - MIR SINE MIR -74 188 2 420 224 103 9 chrX 41802137 41802253 -135171887 + L2 LINE L2 3187 3313 0 2258 119 3 3 chrX 41802933 41803243 -135170897 + AluSx SINE Alu 1 310 -2 351 305 42 80 chrX 41803247 41803318 -135170822 - L2 LINE L2 -85 3187 3115 930 196 44 78 chrX 41803318 41803540 -135170600 + MIR SINE MIR 1 214 -48 2527 72 7 0 chrX 41803540 41803846 -135170294 + AluY SINE Alu 1 308 -3 930 196 44 78 chrX 41803846 41803894 -135170246 + MIR SINE MIR 214 262 0 351 305 42 80 chrX 41803894 41804035 -135170105 - L2 LINE L2 -157 3115 2983 215 242 44 88 chrX 41804052 41804143 -135169997 + L2 LINE L2 2655 2741 -573 188 340 146 0 chrX 41804351 41804454 -135169686 + L2 LINE L2 3137 3254 -18 198 0 0 0 chrX 41805973 41805995 -135168145 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 578 204 32 38 chrX 41805997 41806154 -135167986 - L2 LINE L2 -9 3304 3149 2507 72 3 3 chrX 41806156 41806461 -135167679 + AluSx SINE Alu 1 305 -7 1066 134 0 0 chrX 41806462 41806636 -135167504 + AluSg/x SINE Alu 136 309 0 1190 238 243 60 chrX 41806641 41807526 -135166614 - L2 LINE L2 -160 3153 2431 2334 110 0 0 chrX 41807526 41807826 -135166314 + AluSg SINE Alu 1 300 -10 1190 238 243 60 chrX 41807826 41807897 -135166243 - L2 LINE L2 -882 2431 2374 2432 88 3 0 chrX 41807897 41808202 -135165938 + AluSx SINE Alu 1 306 -6 1190 238 243 60 chrX 41808202 41808231 -135165909 - L2 LINE L2 -939 2374 1963 2498 84 0 0 chrX 41808958 41809268 -135164872 - AluSg SINE Alu 0 310 1 906 209 16 5 chrX 41809545 41809736 -135164404 + MIR SINE MIR 70 262 0 2172 104 0 3 chrX 41809798 41810128 -135164012 - AluSc SINE Alu 0 329 1 2286 107 3 0 chrX 41810130 41810428 -135163712 - AluSc SINE Alu -10 299 1 189 26 51 26 chrX 41810429 41810468 -135163672 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1093 52 0 37 chrX 41810468 41810604 -135163536 - AluYb8 SINE Alu -187 131 1 467 45 15 0 chrX 41810617 41810683 -135163457 - MER41B LTR ERV1 -88 547 481 445 283 81 7 chrX 41811533 41811711 -135162429 + MIR SINE MIR 16 208 -54 329 259 60 97 chrX 41811741 41811957 -135162183 - L2 LINE L2 -95 3177 2970 2356 90 27 0 chrX 41812023 41812322 -135161818 - AluSx SINE Alu -5 307 1 261 279 71 29 chrX 41812328 41812468 -135161672 - L2 LINE L2 -508 2806 2661 719 257 140 9 chrX 41812765 41813100 -135161040 - L1ME4a LINE L1 0 6121 5743 227 326 125 14 chrX 41813135 41813279 -135160861 - L1ME4a LINE L1 -359 5762 5603 532 154 27 0 chrX 41813298 41813408 -135160732 - L1ME4a LINE L1 -3 6118 6006 2518 82 0 0 chrX 41813658 41813961 -135160179 + AluSg SINE Alu 1 303 -7 311 237 123 0 chrX 41814526 41814640 -135159500 - MIR SINE MIR -64 198 71 381 252 98 66 chrX 41815510 41815796 -135158344 + L1MC4 LINE L1 7624 7918 -124 1874 146 14 52 chrX 41815828 41815919 -135158221 + MER7A DNA MER2_type 1 94 -2944 2350 107 13 0 chrX 41815919 41816218 -135157922 - AluSx SINE Alu -6 306 4 1874 146 14 52 chrX 41816218 41816488 -135157652 + MER7A DNA MER2_type 94 346 0 315 269 57 71 chrX 41816488 41816621 -135157519 + L1MC4 LINE L1 7908 8040 -2 621 256 7 151 chrX 41816703 41816885 -135157255 - MIR SINE MIR 0 262 140 979 106 0 0 chrX 41816885 41817017 -135157123 + FLAM_C SINE Alu 2 133 0 621 256 7 151 chrX 41817017 41817139 -135157001 - MIR SINE MIR -122 140 2 867 169 7 7 chrX 41817663 41817811 -135156329 - MER5B DNA MER1_type -3 175 28 2378 99 0 6 chrX 41817811 41818123 -135156017 - AluSg SINE Alu 0 310 1 286 267 0 0 chrX 41818194 41818280 -135155860 - L1MC4 LINE L1 -139 7903 7818 2251 128 0 0 chrX 41818295 41818599 -135155541 - AluJo SINE Alu -3 309 6 31 36 0 18 chrX 41818648 41818683 -135155457 + AT_rich Low_complexity Low_complexity 1 36 -19 2088 81 49 14 chrX 41818683 41818968 -135155172 - AluSq SINE Alu -18 295 1 31 36 0 18 chrX 41818968 41818988 -135155152 + AT_rich Low_complexity Low_complexity 36 55 0 2390 95 0 0 chrX 41819004 41819300 -135154840 + AluSx SINE Alu 1 296 -16 385 279 90 0 chrX 41819361 41819483 -135154657 - MIR SINE MIR -6 256 124 2266 111 0 3 chrX 41819525 41819823 -135154317 - AluSx SINE Alu -15 297 1 428 298 156 37 chrX 41819907 41820125 -135154015 + L2 LINE L2 3028 3271 -1 365 274 62 9 chrX 41820113 41820226 -135153914 - MIR SINE MIR -131 131 13 * 311 140 40 0 chrX 41820444 41820494 -135153646 - MIR SINE MIR -110 152 101 374 333 17 0 chrX 41820623 41820740 -135153400 - MIR3 SINE MIR -54 154 36 379 223 66 58 chrX 41821095 41821216 -135152924 - MIR3 SINE MIR -76 132 11 504 262 63 0 chrX 41821959 41822085 -135152055 - MIR SINE MIR -72 190 57 2339 91 3 13 chrX 41822103 41822410 -135151730 + AluSp SINE Alu 1 304 -9 449 186 0 12 chrX 41822587 41822673 -135151467 - MIR SINE MIR -10 252 168 314 322 58 8 chrX 41822936 41823057 -135151083 + MIR SINE MIR 36 162 -100 2452 96 0 0 chrX 41823565 41823867 -135150273 + AluSx SINE Alu 1 302 -10 234 270 86 46 chrX 41824819 41824971 -135149169 + MIR3 SINE MIR 37 194 -14 275 241 131 36 chrX 41826204 41826288 -135147852 + MIR SINE MIR 25 117 -91 512 165 62 0 chrX 41827570 41827667 -135146473 + MIR SINE MIR 81 183 -79 240 260 14 41 chrX 41827849 41827922 -135146218 + MIR SINE MIR 60 130 -78 191 324 264 20 chrX 41827990 41828391 -135145749 + L2 LINE L2 2151 2649 -665 1061 157 156 0 chrX 41829261 41829540 -135144600 + MER33 DNA MER1_type 1 323 -1 402 274 13 43 chrX 41829542 41829680 -135144460 - MIR SINE MIR -65 143 27 189 281 169 22 chrX 41830428 41830517 -135143623 + MER5A DNA MER1_type 50 151 -38 2047 213 28 45 chrX 41830526 41830558 -135143582 + L1M4 LINE L1 2650 2681 -3465 1936 147 26 37 chrX 41830558 41830755 -135143385 - MER2 DNA MER2_type 0 344 151 1969 132 7 0 chrX 41830755 41831044 -135143096 - AluSg SINE Alu -8 302 12 1936 147 26 37 chrX 41831044 41831194 -135142946 - MER2 DNA MER2_type -193 151 1 2047 213 28 45 chrX 41831194 41831538 -135142602 + L1M4 LINE L1 2681 3030 -3116 1867 146 0 59 chrX 41831538 41831675 -135142465 + AluJb SINE Alu 1 144 -168 2330 103 0 0 chrX 41831675 41831977 -135142163 + AluSx SINE Alu 1 302 -10 1867 146 0 59 chrX 41831977 41831988 -135142152 + AluJb SINE Alu 144 154 -158 1942 132 33 0 chrX 41831988 41832284 -135141856 + AluSx SINE Alu 1 305 0 1867 146 0 59 chrX 41832284 41832456 -135141684 + AluJb SINE Alu 154 304 -8 2047 213 28 45 chrX 41832456 41832630 -135141510 + L1M4 LINE L1 3030 3206 -2940 2074 132 0 0 chrX 41832630 41832940 -135141200 - AluSx SINE Alu 0 312 3 1550 174 60 7 chrX 41832944 41833106 -135141034 - AluJo SINE Alu -16 296 111 582 28 0 0 chrX 41833106 41833178 -135140962 + (TG)n Simple_repeat Simple_repeat 2 73 0 1550 174 60 7 chrX 41833178 41833296 -135140844 - AluJo SINE Alu -201 111 1 2047 213 28 45 chrX 41833296 41833419 -135140721 + L1M4 LINE L1 3209 3319 -2827 968 166 10 25 chrX 41833417 41833616 -135140524 + L1MB8 LINE L1 5886 6081 -97 * 1158 90 11 43 chrX 41833616 41833804 -135140336 + MLT1B LTR MaLR 1 182 -208 1380 148 33 29 chrX 41833820 41834063 -135140077 + AluJo SINE Alu 59 302 -10 239 32 0 0 chrX 41834190 41834221 -135139919 + L1MB8 LINE L1 6095 6125 -53 313 214 19 0 chrX 41834245 41834348 -135139792 - MER69 DNA AcHobo -106 2420 2316 957 104 0 15 chrX 41834352 41834486 -135139654 - AluSq/x SINE Alu -180 132 1 1111 176 120 14 chrX 41834486 41834845 -135139295 - MER69 DNA AcHobo -193 2333 1937 419 200 0 0 chrX 41834841 41834921 -135139219 - MER69 DNA AcHobo -2446 80 1 * 363 266 4 167 chrX 41834928 41835180 -135138960 - L2 LINE L2 -157 3115 2905 289 211 40 13 chrX 41835486 41835562 -135138578 - Charlie4 DNA MER1_type -7 1954 1877 937 86 0 0 chrX 41835578 41835695 -135138445 + AluSg/x SINE Alu 180 296 -14 725 120 28 9 chrX 41835699 41835807 -135138333 - AluJb SINE Alu -189 123 14 514 116 21 0 chrX 41835810 41835905 -135138235 - Charlie4 DNA MER1_type -67 1894 1798 2024 117 20 17 chrX 41835951 41836249 -135137891 + AluSx SINE Alu 1 299 -13 2525 84 7 0 chrX 41836435 41836743 -135137397 + AluSg SINE Alu 1 310 0 1363 167 0 16 chrX 41837015 41837260 -135136880 + AluJb SINE Alu 54 294 -18 2422 98 0 0 chrX 41837555 41837862 -135136278 + AluSx SINE Alu 1 307 -5 1318 93 0 0 chrX 41837862 41838023 -135136117 + AluSg/x SINE Alu 132 292 -18 380 309 24 42 chrX 41838075 41838240 -135135900 + LTR16B LTR ERVL 1 162 -302 1516 151 13 8 chrX 41838266 41838504 -135135636 + AluJb SINE Alu 55 293 -19 2354 101 0 7 chrX 41838539 41838845 -135135295 - AluSc SINE Alu -5 304 1 277 189 19 142 chrX 41838852 41838880 -135135260 + MLT1J LTR MaLR 415 445 -66 1503 137 82 75 chrX 41838880 41839173 -135134967 + AluJb SINE Alu 1 295 -17 277 189 19 142 chrX 41839173 41839250 -135134890 + MLT1J LTR MaLR 445 507 -4 2261 93 0 4 chrX 41839331 41839640 -135134500 + AluSx SINE Alu 3 310 0 363 200 0 0 chrX 41840283 41840348 -135133792 + MER92B LTR ERV1 1 65 -571 2413 80 0 7 chrX 41840353 41840652 -135133488 + AluSx SINE Alu 1 297 -15 889 284 95 19 chrX 41840653 41840970 -135133170 - L2 LINE L2 -703 2611 2271 623 213 130 57 chrX 41841005 41841305 -135132835 - L2 LINE L2 -1303 2011 1690 2269 103 0 0 chrX 41841311 41841602 -135132538 + AluSx SINE Alu 1 291 -21 458 283 115 49 chrX 41841604 41841830 -135132310 - L2 LINE L2 -1997 1317 1077 1565 189 74 109 chrX 41841830 41842327 -135131813 - MLT1E LTR MaLR -2 591 112 414 0 0 0 chrX 41842327 41842373 -135131767 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 852 143 8 0 chrX 41842373 41842492 -135131648 - FLAM_C SINE Alu -23 120 1 545 228 8 16 chrX 41842492 41842619 -135131521 - MLT1E LTR MaLR -467 126 1 485 193 14 151 chrX 41842620 41842687 -135131453 - L2 LINE L2 -2234 1080 1005 1678 213 116 76 chrX 41842687 41843255 -135130885 - MLT1E LTR MaLR 0 593 3 485 193 14 151 chrX 41843255 41843324 -135130816 - L2 LINE L2 -2309 1005 981 2168 84 0 25 chrX 41843324 41843628 -135130512 + AluSc SINE Alu 2 298 0 485 193 14 151 chrX 41843628 41843707 -135130433 - L2 LINE L2 -2333 981 893 * 589 302 0 59 chrX 41843689 41843858 -135130282 - MER91A DNA MER1_type -34 162 4 341 331 41 8 chrX 41843899 41844020 -135130120 + MIR SINE MIR 60 184 -78 2298 73 3 14 chrX 41844039 41844360 -135129780 - AluSq SINE Alu 0 318 1 1143 127 0 6 chrX 41844594 41844751 -135129389 - AluJb SINE Alu -20 292 137 2084 107 7 27 chrX 41844799 41845099 -135129041 + AluSx SINE Alu 1 294 -18 288 297 0 18 chrX 41845197 41845308 -135128832 + LTR67 LTR ERVL 442 550 -7 1575 158 6 73 chrX 41845494 41845608 -135128532 + AluJb SINE Alu 11 131 -181 467 31 31 0 chrX 41845608 41845672 -135128468 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 1575 158 6 73 chrX 41845672 41845873 -135128267 + AluJb SINE Alu 131 305 -7 2300 110 0 3 chrX 41845881 41846191 -135127949 + AluSp SINE Alu 1 309 -4 2326 83 0 3 chrX 41846191 41846480 -135127660 - AluSx SINE Alu -24 288 1 2193 60 60 18 chrX 41847413 41847695 -135126445 - AluY SINE Alu -17 294 1 1193 116 17 12 chrX 41847778 41847950 -135126190 - AluSx SINE Alu -139 173 1 1260 151 82 167 chrX 41848104 41848328 -135125812 + MLT1C LTR MaLR 6 248 -219 2285 119 3 3 chrX 41848328 41848640 -135125500 + AluSx SINE Alu 1 312 0 1260 151 82 167 chrX 41848640 41848848 -135125292 + MLT1C LTR MaLR 248 396 -71 2325 84 13 13 chrX 41848848 41849156 -135124984 - AluSp SINE Alu -5 308 1 1260 151 82 167 chrX 41849156 41849200 -135124940 + MLT1C LTR MaLR 396 442 -25 1970 165 0 3 chrX 41849440 41849749 -135124391 + AluJb SINE Alu 2 309 -3 1741 127 12 50 chrX 41849782 41849872 -135124268 + L1MB2 LINE L1 5821 5913 -258 777 159 15 15 chrX 41849872 41850004 -135124136 + FLAM_C SINE Alu 2 133 0 1741 127 12 50 chrX 41850004 41850236 -135123904 + L1MB2 LINE L1 5913 6131 -40 297 79 0 0 chrX 41850236 41850274 -135123866 + LTR23 LTR ERV1 320 357 -80 341 88 0 0 chrX 41850293 41850350 -135123790 + L1MB3 LINE L1 6127 6183 0 713 276 207 17 chrX 41850365 41850803 -135123337 + L2 LINE L2 2791 3313 0 893 209 25 0 chrX 41851040 41851198 -135122942 - FRAM SINE Alu -4 162 1 1908 142 4 4 chrX 41851450 41851724 -135122416 + AluJb SINE Alu 6 279 -33 1050 62 34 17 chrX 41851738 41851915 -135122225 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2167 130 0 3 chrX 41852077 41852376 -135121764 - AluJb SINE Alu -14 298 1 247 217 183 26 chrX 41852398 41852509 -135121631 - MLT1L LTR MaLR -339 276 148 627 224 0 0 chrX 41852509 41852643 -135121497 - Charlie1 DNA MER1_type 0 2761 2628 1907 159 0 20 chrX 41852644 41852945 -135121195 + AluJb SINE Alu 1 295 -17 2886 106 12 0 chrX 41852945 41853369 -135120771 - L1PA16 LINE L1 -28 6138 5710 806 203 115 21 chrX 41853369 41853561 -135120579 - Charlie1 DNA MER1_type -2551 210 1 842 158 8 0 chrX 41853842 41853975 -135120165 + AluJo SINE Alu 1 134 -178 269 257 136 7 chrX 41854100 41854240 -135119900 + MER113 DNA MER1_type? 1 158 -363 191 157 0 57 chrX 41854933 41855003 -135119137 + A-rich Low_complexity Low_complexity 1 66 0 2440 87 3 10 chrX 41855156 41855291 -135118849 + AluSx SINE Alu 1 135 -177 2326 93 3 0 chrX 41855291 41855593 -135118547 + AluY SINE Alu 1 303 -8 2440 87 3 10 chrX 41855593 41855769 -135118371 + AluSx SINE Alu 135 310 -2 350 365 0 0 chrX 41856039 41856146 -135117994 - MIR SINE MIR -61 147 41 324 209 58 0 chrX 41856544 41856630 -135117510 + L2 LINE L2 2553 2643 -671 776 233 49 0 chrX 41856632 41856795 -135117345 + MER91A DNA MER1_type 1 171 -25 2442 80 3 26 chrX 41856801 41857114 -135117026 - AluSg SINE Alu -2 308 3 241 254 127 0 chrX 41857122 41857193 -135116947 + MER91A DNA MER1_type 88 167 -29 1461 249 55 86 chrX 41857224 41857358 -135116782 + L2 LINE L2 2638 2775 -538 2246 105 0 29 chrX 41857358 41857671 -135116469 + AluSx SINE Alu 1 304 -8 1461 249 55 86 chrX 41857671 41858233 -135115907 + L2 LINE L2 2775 3313 0 2433 78 0 0 chrX 41859033 41859326 -135114814 + AluSg SINE Alu 1 293 -17 2489 75 0 3 chrX 41859352 41859658 -135114482 + AluY SINE Alu 3 307 -4 1874 157 3 7 chrX 41859716 41860015 -135114125 - AluJb SINE Alu -14 298 1 627 199 23 131 chrX 41860117 41860293 -135113847 + MLT1E LTR MaLR 1 166 -427 250 235 44 0 chrX 41860267 41860335 -135113805 + MLT1E LTR MaLR 114 184 -409 * 862 158 57 6 chrX 41860359 41860517 -135113623 + MLT1E LTR MaLR 428 593 0 2481 104 0 0 chrX 41860521 41860830 -135113310 + AluSx SINE Alu 1 309 -3 349 247 11 11 chrX 41860903 41860996 -135113144 + MIR SINE MIR 140 232 -30 253 240 27 0 chrX 41861268 41861343 -135112797 - L1MB5 LINE L1 0 6174 6098 4391 143 26 30 chrX 41861351 41861519 -135112621 - L1MB5 LINE L1 -119 6055 5888 2592 57 0 0 chrX 41861519 41861817 -135112323 - AluY SINE Alu -13 298 1 4391 143 26 30 chrX 41861817 41862218 -135111922 - L1MB5 LINE L1 -286 5888 5487 189 0 0 0 chrX 41862218 41862239 -135111901 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4391 143 26 30 chrX 41862239 41862399 -135111741 - L1MB5 LINE L1 -687 5487 5323 1906 148 27 20 chrX 41862399 41862697 -135111443 - AluJo SINE Alu -12 300 1 4391 143 26 30 chrX 41862697 41862820 -135111320 - L1MB5 LINE L1 -851 5323 5201 878 182 0 25 chrX 41862820 41862979 -135111161 - AluJo/FRAM SINE Alu -4 308 154 477 187 0 0 chrX 41862979 41863054 -135111086 - AluJ/FLAM SINE Alu -236 76 2 631 244 52 21 chrX 41863130 41863323 -135110817 + MER63A DNA MER1_type 1 199 -11 2413 84 0 0 chrX 41863607 41863904 -135110236 - AluSg SINE Alu -13 297 1 204 240 106 29 chrX 41864223 41864327 -135109813 - L2 LINE L2 -236 3036 2925 2195 102 0 31 chrX 41864391 41864713 -135109427 - AluSx SINE Alu 0 312 13 2182 74 3 0 chrX 41864868 41865184 -135108956 - AluY SINE Alu 0 317 1 1723 143 17 3 chrX 41865184 41865477 -135108663 - AluJb SINE Alu -15 297 1 1175 248 27 17 chrX 41865556 41865850 -135108290 - L2 LINE L2 -744 2570 2274 1080 140 0 0 chrX 41865851 41866008 -135108132 + AluSq SINE Alu 1 157 -156 1614 159 87 0 chrX 41866066 41866342 -135107798 - AluJo SINE Alu -1 301 2 686 283 125 0 chrX 41866345 41866529 -135107611 + MIR SINE MIR 21 227 -35 800 40 0 0 chrX 41866529 41866628 -135107512 - AluSg/x SINE Alu -11 298 200 733 222 0 0 chrX 41866702 41866855 -135107285 + L1MA10 LINE L1 6180 6332 -2 1001 118 0 0 chrX 41867117 41867332 -135106808 - AluSg/x SINE Alu 0 375 161 686 13 0 0 chrX 41867348 41867424 -135106716 + AluSq/x SINE Alu 61 136 -176 1950 94 0 31 chrX 41867424 41867711 -135106429 + AluSx SINE Alu 21 298 -14 1989 208 66 48 chrX 41867822 41868385 -135105755 + MER90 LTR ERV1 3 575 0 665 252 61 70 chrX 41868457 41868647 -135105493 + MLT1E LTR MaLR 1 190 -352 294 50 0 0 chrX 41868647 41868687 -135105453 + (TC)n Simple_repeat Simple_repeat 1 40 0 665 252 61 70 chrX 41868687 41868726 -135105414 + MLT1E LTR MaLR 190 228 -314 325 267 0 0 chrX 41868776 41868836 -135105304 + MLT1E LTR MaLR 370 429 -164 1055 83 22 33 chrX 41868899 41869079 -135105061 + L1MA1 LINE L1 5937 6114 -188 293 73 0 0 chrX 41869080 41869121 -135105019 - AluSp SINE Alu -10 293 253 1705 63 0 0 chrX 41869121 41869327 -135104813 - AluSp SINE Alu -107 206 1 1322 56 5 93 chrX 41869327 41869347 -135104793 + L1MA1 LINE L1 6108 6128 -174 2335 71 0 3 chrX 41869347 41869642 -135104498 - AluY SINE Alu -17 294 1 1322 56 5 93 chrX 41869642 41869668 -135104472 + L1MA1 LINE L1 6128 6155 -147 1807 133 24 3 chrX 41869668 41869962 -135104178 + AluSq SINE Alu 1 300 -13 1322 56 5 93 chrX 41869962 41870128 -135104012 + L1MA1 LINE L1 6155 6302 0 2181 110 7 0 chrX 41870143 41870451 -135103689 + AluSx SINE Alu 1 310 -2 460 241 113 0 chrX 41870451 41870584 -135103556 + L1ME3A LINE L1 5732 5879 -291 1950 132 3 0 chrX 41870584 41870879 -135103261 + AluSx SINE Alu 1 296 -16 2314 48 0 48 chrX 41870927 41871241 -135102899 + AluY SINE Alu 1 299 -12 27 92 0 0 chrX 41871260 41871336 -135102804 + AT_rich Low_complexity Low_complexity 1 76 0 2469 55 3 3 chrX 41871348 41871657 -135102483 + AluY SINE Alu 1 309 -2 1526 138 0 147 chrX 41871660 41871819 -135102321 + AluJo SINE Alu 1 81 -221 2115 104 7 0 chrX 41871819 41872118 -135102022 + AluSq SINE Alu 1 301 -12 1526 138 0 147 chrX 41872118 41872312 -135101828 + AluJo SINE Alu 81 302 0 1939 55 0 0 chrX 41872707 41872944 -135101196 + AluSq SINE Alu 1 237 -76 1663 139 38 29 chrX 41972944 41973260 -135000880 + L1MC2 LINE L1 5867 6185 -159 3119 24 0 0 chrX 41973570 41973941 -135000199 - L1P LINE L1 -1563 4583 4213 7600 26 0 1 chrX 41973941 41974961 -134999179 + L1PA4 LINE L1 5133 6151 -4 1221 248 94 35 chrX 41974979 41975434 -134998706 + L1M4 LINE L1 3839 4320 -1826 259 268 28 0 chrX 41975444 41975515 -134998625 + L1PA12 LINE L1 2 74 -7507 * 14918 120 37 0 chrX 41975514 41977865 -134996275 - L1PA8A LINE L1 -1485 4661 2225 4042 97 38 2 chrX 41977862 41978931 -134995209 + L1PA8A LINE L1 4668 5783 -348 * 1957 93 4 11 chrX 41978931 41979200 -134994940 + L1PB1 LINE L1 5874 6150 -1 6639 151 10 5 chrX 41979777 41981690 -134992450 - L1PA13 LINE L1 -2 6161 4144 1106 75 149 0 chrX 41982954 41983128 -134991012 + L1PB2 LINE L1 5951 6150 -1 2260 130 120 8 chrX 41983216 41983600 -134990540 - MSTA LTR MaLR 0 428 2 299 237 217 20 chrX 41985905 41986057 -134988083 + L1MC4 LINE L1 6765 6946 -1096 2291 108 0 6 chrX 41986079 41986393 -134987747 + AluSx SINE Alu 1 312 0 1116 268 119 18 chrX 41986397 41986908 -134987232 + L1MC4a LINE L1 5606 6168 -1640 284 257 70 82 chrX 41987199 41987370 -134986770 + HAL1 LINE L1 29 197 -2310 15158 31 3 1 chrX 41987441 41989287 -134984853 - L1P LINE L1 -1392 4754 2904 17070 41 0 0 chrX 41989289 41992179 -134981961 + L1PA5 LINE L1 3259 6154 0 537 235 148 9 chrX 41992179 41992396 -134981744 + HAL1 LINE L1 2075 2321 -186 * 3158 196 40 23 chrX 41992393 41993504 -134980636 + L1M4 LINE L1 4558 5695 -489 * 5707 165 53 6 chrX 41993492 41993737 -134980403 + L1MC1 LINE L1 5091 5323 -1010 2431 67 13 0 chrX 41993737 41994037 -134980103 + AluSp SINE Alu 1 304 -9 5707 165 53 6 chrX 41994037 41994385 -134979755 + L1MC1 LINE L1 5323 5653 -680 2103 130 3 10 chrX 41994385 41994693 -134979447 + AluJb SINE Alu 1 306 -6 5707 165 53 6 chrX 41994693 41995291 -134978849 + L1MC1 LINE L1 5653 6332 -1 327 233 53 0 chrX 41995321 41995455 -134978685 + L1MEc LINE L1 2548 2650 -3890 6004 201 43 61 chrX 41995506 41997412 -134976728 + L1M4 LINE L1 16 1918 -4728 6522 158 27 21 chrX 41997413 41998771 -134975369 + L1PA16 LINE L1 3960 5354 -812 2165 117 0 3 chrX 41998771 41999061 -134975079 + AluSx SINE Alu 1 289 -23 6522 158 27 21 chrX 41999061 41999870 -134974270 + L1PA16 LINE L1 5354 6157 -9 679 228 0 103 chrX 41999865 42000039 -134974101 + L1M4 LINE L1 1891 2037 -4609 * 936 85 15 0 chrX 42000039 42000169 -134973971 + FLAM_C SINE Alu 2 133 0 679 228 0 103 chrX 42000169 42000227 -134973913 + L1M4 LINE L1 2037 2099 -4547 1560 166 25 32 chrX 42000250 42000528 -134973612 - AluJo SINE Alu -34 278 3 206 170 0 21 chrX 42000542 42000589 -134973551 + (TA)n Simple_repeat Simple_repeat 1 46 0 210 98 33 66 chrX 42000613 42000735 -134973405 + (TA)n Simple_repeat Simple_repeat 1 118 0 2244 97 7 7 chrX 42000774 42001073 -134973067 + AluSx SINE Alu 1 299 -13 881 230 46 18 chrX 42001078 42001361 -134972779 + L1M4c LINE L1 1197 1487 -4897 340 100 0 0 chrX 42001366 42001416 -134972724 - L1M3 LINE L1 -361 5807 5758 * 13263 160 33 29 chrX 42001410 42003049 -134971091 - L1 LINE L1 -2216 5349 3719 2243 105 0 3 chrX 42003049 42003345 -134970795 - AluSg SINE Alu -10 300 6 13263 160 33 29 chrX 42003345 42004490 -134969650 - L1 LINE L1 -3846 3719 2581 2200 114 3 0 chrX 42004490 42004787 -134969353 - AluSx SINE Alu -14 298 1 13263 160 33 29 chrX 42004787 42005546 -134968594 - L1 LINE L1 -4984 2581 1827 2486 47 3 17 chrX 42005546 42005846 -134968294 + AluY SINE Alu 1 296 -15 13263 160 33 29 chrX 42005846 42005906 -134968234 - L1 LINE L1 -5738 1827 1769 252 0 0 0 chrX 42005906 42005934 -134968206 + (TC)n Simple_repeat Simple_repeat 2 29 0 13263 160 33 29 chrX 42005934 42006961 -134967179 - L1 LINE L1 -5796 1769 12 1310 221 60 0 chrX 42006964 42007280 -134966860 - L1 LINE L1 -3106 3040 2706 1456 238 84 45 chrX 42007301 42007740 -134966400 + L1ME1 LINE L1 5582 6049 -117 2248 106 3 0 chrX 42007740 42008042 -134966098 - AluSx SINE Alu -8 304 2 1456 238 84 45 chrX 42008042 42008160 -134965980 + L1ME1 LINE L1 6049 6161 -5 903 218 85 5 chrX 42008213 42008424 -134965716 + L1MCa LINE L1 35 262 -6164 * 2841 197 14 5 chrX 42008419 42009009 -134965131 + L1MCa LINE L1 776 1370 -5056 * 5238 149 25 20 chrX 42009006 42009261 -134964879 + L1MC2 LINE L1 5177 5429 -2356 2247 109 0 0 chrX 42009261 42009564 -134964576 + AluSx SINE Alu 1 303 -9 5238 149 25 20 chrX 42009564 42010338 -134963802 + L1MC2 LINE L1 5429 7671 -114 41 36 0 0 chrX 42010343 42010398 -134963742 + AT_rich Low_complexity Low_complexity 1 55 0 613 128 27 88 chrX 42010398 42010484 -134963656 + L1MC2 LINE L1 6205 6280 -64 2313 76 17 0 chrX 42010484 42010773 -134963367 - AluSx SINE Alu -18 294 1 613 128 27 88 chrX 42010773 42010834 -134963306 + L1MC2 LINE L1 6280 6343 -1 268 185 15 0 chrX 42010836 42010901 -134963239 + HAL1 LINE L1 2306 2371 -136 862 315 82 37 chrX 42011371 42012688 -134961452 + L1ME4a LINE L1 3689 5090 -1056 5446 111 13 5 chrX 42012692 42013511 -134960629 + L1MA4 LINE L1 5450 6275 -25 34 0 0 0 chrX 42013535 42013569 -134960571 + AT_rich Low_complexity Low_complexity 1 34 0 521 296 64 75 chrX 42013688 42014063 -134960077 + L1ME4a LINE L1 5665 6035 -86 747 264 125 39 chrX 42014099 42014436 -134959704 - L2 LINE L2 0 3313 2948 24 0 0 0 chrX 42014459 42014483 -134959657 + AT_rich Low_complexity Low_complexity 1 24 0 315 259 62 0 chrX 42014484 42014565 -134959575 - L2 LINE L2 -317 2955 2870 22 35 0 0 chrX 42014684 42014713 -134959427 + AT_rich Low_complexity Low_complexity 1 29 0 443 237 93 0 chrX 42014747 42014865 -134959275 + MIR SINE MIR 61 189 -73 259 163 0 0 chrX 42014883 42014926 -134959214 - MLT1K LTR MaLR 0 588 546 189 216 0 0 chrX 42015513 42015550 -134958590 + L2 LINE L2 3217 3253 -19 198 231 0 0 chrX 42015575 42015614 -134958526 + L2 LINE L2 3024 3062 -210 279 292 88 52 chrX 42015684 42015876 -134958264 - L2 LINE L2 -1 3271 3073 576 246 35 23 chrX 42015892 42016063 -134958077 + L2 LINE L2 2280 2452 -862 352 306 54 50 chrX 42016297 42016575 -134957565 + L1ME4a LINE L1 5591 5869 -252 217 371 69 0 chrX 42016794 42016910 -134957230 - L2 LINE L2 -28 3244 3121 735 108 0 20 chrX 42017784 42017886 -134956254 + FLAM_C SINE Alu 19 118 -25 466 213 177 14 chrX 42017977 42018118 -134956022 - MER5A DNA MER1_type -21 168 5 1857 78 82 4 chrX 42018263 42018518 -134955622 + AluSx SINE Alu 1 275 -37 180 0 0 0 chrX 42018523 42018543 -134955597 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 322 267 44 0 chrX 42018613 42018703 -134955437 - MIR SINE MIR -1 261 168 217 299 91 0 chrX 42018712 42018789 -134955351 + L2 LINE L2 3176 3259 -13 1095 204 56 21 chrX 42018996 42019334 -134954806 - L1MC5 LINE L1 -32 7929 7580 267 305 0 0 chrX 42019514 42019574 -134954566 + (TG)n Simple_repeat Simple_repeat 1 60 0 348 240 62 73 chrX 42019617 42019809 -134954331 - L2 LINE L2 -41 3272 3083 545 280 64 32 chrX 42019824 42019963 -134954177 + L1M4 LINE L1 14 164 -6378 4999 103 19 7 chrX 42019963 42020645 -134953495 + L1PA16 LINE L1 5476 6165 -1 545 280 64 32 chrX 42020645 42020723 -134953417 + L1M4 LINE L1 164 238 -6304 371 268 56 139 chrX 42020730 42021239 -134952901 + L2 LINE L2 2762 3227 -45 297 109 0 0 chrX 42021239 42021285 -134952855 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 181 215 114 13 chrX 42021286 42021365 -134952775 + L3 LINE CR1 1367 1453 -124 2181 177 87 100 chrX 42021659 42022291 -134951849 - MLT1E3 LTR MaLR 0 624 1 182 353 33 49 chrX 42022303 42022425 -134951715 - L2 LINE L2 -236 3036 2917 225 284 0 0 chrX 42023051 42023132 -134951008 + (CA)n Simple_repeat Simple_repeat 2 82 0 9589 96 18 7 chrX 42023162 42024448 -134949692 - HSMAR2 DNA Mariner -1 1301 2 288 286 34 115 chrX 42025677 42025911 -134948229 - L2 LINE L2 -85 3187 2973 * 310 315 93 19 chrX 42025890 42026106 -134948034 - L2 LINE L2 -448 2866 2635 997 271 66 66 chrX 42027033 42027410 -134946730 + L2 LINE L2 2896 3272 0 275 305 19 19 chrX 42027971 42028125 -134946015 + (CAGAGA)n Simple_repeat Simple_repeat 4 157 0 21174 148 35 62 chrX 42029096 42032445 -134941695 + L1M1 LINE L1 12 3452 -4113 2227 120 0 0 chrX 42032445 42032745 -134941395 - AluY SINE Alu -10 301 2 21174 148 35 62 chrX 42032745 42034408 -134939732 + L1M1 LINE L1 3452 5159 -2406 1172 51 7 0 chrX 42034408 42034545 -134939595 + AluY SINE Alu 1 138 -173 21174 148 35 62 chrX 42034545 42034750 -134939390 + L1M1 LINE L1 5159 5368 -2197 2360 90 0 0 chrX 42034750 42035040 -134939100 + AluY SINE Alu 2 291 -20 21174 148 35 62 chrX 42035040 42036566 -134937574 + L1M1 LINE L1 5368 6705 -860 1593 111 43 13 chrX 42036567 42036802 -134937338 + AluSq SINE Alu 61 302 -11 44149 47 1 4 chrX 42037327 42039171 -134934969 + L1PA4 LINE L1 2 1851 -4304 8968 61 5 165 chrX 42039171 42040765 -134933375 - SVA Other Other 0 1386 48 216 0 0 0 chrX 42040766 42040790 -134933350 + (GGGAGA)n Simple_repeat Simple_repeat 2 25 0 44149 47 1 4 chrX 42040790 42045115 -134929025 + L1PA4 LINE L1 1850 6152 -3 317 333 41 29 chrX 42045130 42045301 -134928839 - MLT1K LTR MaLR -333 255 83 1266 242 93 37 chrX 42045580 42046010 -134928130 - LTR67 LTR ERVL -7 550 97 232 317 89 0 chrX 42046713 42046814 -134927326 + MIR SINE MIR 80 189 -73 515 263 56 39 chrX 42046908 42047087 -134927053 - MIR3 SINE MIR -22 186 5 214 324 63 21 chrX 42047157 42047299 -134926841 - L2 LINE L2 -4 3268 3121 441 267 77 41 chrX 42047514 42047764 -134926376 + L1M4b LINE L1 20 553 -6302 6431 138 10 24 chrX 42048095 42048601 -134925539 - L1MA6 LINE L1 -9 6291 5780 540 42 0 0 chrX 42048601 42048672 -134925468 + (TG)n Simple_repeat Simple_repeat 2 72 0 6431 138 10 24 chrX 42048672 42049142 -134924998 - L1MA6 LINE L1 -520 5780 5336 6535 101 5 13 chrX 42049142 42050503 -134923637 - L1PA13 LINE L1 -1 6162 4791 6431 138 10 24 chrX 42050503 42050760 -134923380 - L1MA6 LINE L1 -964 5336 5077 1068 164 16 0 chrX 42050762 42050945 -134923195 + L1M3 LINE L1 5624 5809 -362 6149 131 8 27 chrX 42050945 42051409 -134922731 + L1PA16 LINE L1 4927 5398 -768 2635 69 0 0 chrX 42051409 42051726 -134922414 + L1PA6 LINE L1 5827 6143 -11 6149 131 8 27 chrX 42051726 42052521 -134921619 + L1PA16 LINE L1 5398 6166 0 1031 257 35 15 chrX 42052558 42052859 -134921281 + L1ME1 LINE L1 5887 6159 -7 242 309 66 90 chrX 42053038 42053371 -134920769 - L2 LINE L2 -346 2968 2644 * 996 295 50 25 chrX 42053369 42053728 -134920412 - L2 LINE L2 -27 3286 2919 802 306 92 30 chrX 42054070 42054334 -134919806 - L2 LINE L2 -11 3302 3011 514 264 18 0 chrX 42054334 42054444 -134919696 - MER81 DNA DNA -2 112 1 802 306 92 30 chrX 42054444 42054516 -134919624 - L2 LINE L2 -302 3011 2945 195 342 0 13 chrX 42055243 42055319 -134918821 + L3 LINE CR1 1493 1567 -10 30128 43 1 1 chrX 42055745 42060202 -134913938 + L1PA5 LINE L1 1412 6154 0 29 28 0 0 chrX 42060209 42060245 -134913895 + AT_rich Low_complexity Low_complexity 1 36 0 329 267 48 68 chrX 42061195 42061341 -134912799 + L2 LINE L2 2255 2397 -917 27 0 0 0 chrX 42062509 42062536 -134911604 + AT_rich Low_complexity Low_complexity 1 27 0 1935 140 0 3 chrX 42062539 42062825 -134911315 + AluJb SINE Alu 1 285 -27 183 42 0 0 chrX 42062829 42062853 -134911287 + (TATAA)n Simple_repeat Simple_repeat 4 27 0 297 0 0 0 chrX 42064354 42064387 -134909753 + (CA)n Simple_repeat Simple_repeat 2 34 0 2069 102 14 0 chrX 42064478 42064763 -134909377 + AluSx SINE Alu 1 289 -23 237 262 70 59 chrX 42065290 42065477 -134908663 - L2 LINE L2 -1155 2159 1971 291 366 0 0 chrX 42065724 42065817 -134908323 + G-rich Low_complexity Low_complexity 1 93 0 3609 113 43 51 chrX 42065928 42066536 -134907604 - LTR26 LTR ERV1 0 603 1 2399 95 0 7 chrX 42067195 42067501 -134906639 - AluSg SINE Alu -4 306 3 375 350 49 0 chrX 42067874 42068017 -134906123 - MER91A DNA MER1_type -35 161 12 254 216 182 11 chrX 42068358 42068446 -134905694 + MIR SINE MIR 152 254 -8 205 158 0 88 chrX 42068659 42068716 -134905424 + MIR SINE MIR 85 136 -72 1014 217 110 27 chrX 42068867 42069167 -134904973 + Charlie2 DNA MER1_type 6 330 -2452 * 2127 207 94 5 chrX 42069158 42069733 -134904407 + Charlie2 DNA MER1_type 1856 2481 -381 6329 95 31 16 chrX 42069738 42070685 -134903455 + L1MA3 LINE L1 5345 6305 0 5312 125 4 23 chrX 42073393 42073731 -134900409 - L1PB4 LINE L1 0 6156 5813 2562 48 7 0 chrX 42073731 42074022 -134900118 + AluY SINE Alu 1 293 -18 207 0 0 0 chrX 42074022 42074045 -134900095 + (TA)n Simple_repeat Simple_repeat 1 23 0 5312 125 4 23 chrX 42074045 42074544 -134899596 - L1PB4 LINE L1 -341 5815 5334 * 37167 53 1 1 chrX 42074535 42079081 -134895059 - L1P LINE L1 -1593 4553 11 248 198 161 0 chrX 42079348 42079424 -134894716 - MIR3 SINE MIR -4 204 115 2475 111 28 13 chrX 42079424 42079821 -134894319 + L1MA3 LINE L1 5903 6305 0 256 250 106 53 chrX 42079848 42079980 -134894160 - L2 LINE L2 -13 3259 3121 212 233 14 32 chrX 42080112 42080182 -134893958 - MIR SINE MIR -127 81 14 334 197 0 0 chrX 42080857 42080923 -134893217 + MIR SINE MIR 84 149 -113 3211 160 8 8 chrX 42081055 42081574 -134892566 - MER68 LTR ERV1 -36 526 8 358 243 75 0 chrX 42081584 42081691 -134892449 + L2 LINE L2 2230 2344 -970 * 705 300 52 4 chrX 42081689 42081919 -134892221 - MIR SINE MIR -1 261 21 8986 144 8 11 chrX 42081919 42084197 -134889943 - L1PA12 LINE L1 0 6168 3877 375 328 76 31 chrX 42084233 42084523 -134889617 + L2 LINE L2 2337 2639 -675 577 236 90 39 chrX 42084557 42084735 -134889405 + MLT1J LTR MaLR 323 509 -2 1788 218 3 0 chrX 42085389 42085733 -134888407 + L1MC2 LINE L1 50 394 -6032 389 156 55 119 chrX 42085734 42085843 -134888297 + MLT2B1 LTR ERVL 409 510 -10 7520 201 74 58 chrX 42085849 42086757 -134887383 + L1MC2 LINE L1 944 1836 -4590 393 221 26 0 chrX 42086757 42086834 -134887306 + Tigger5 DNA MER2_type 1 79 -2244 242 97 0 0 chrX 42086842 42086873 -134887267 + Tigger5 DNA MER2_type 2292 2322 -1 7520 201 74 58 chrX 42086873 42087381 -134886759 + L1MC2 LINE L1 1842 2341 -4085 1834 134 0 0 chrX 42087381 42087664 -134886476 - L1PA13 LINE L1 0 6163 5881 7520 201 74 58 chrX 42087664 42089349 -134884791 + L1MC2 LINE L1 2341 4215 -2211 2220 108 7 3 chrX 42089349 42089645 -134884495 - AluSx SINE Alu -15 297 1 7520 201 74 58 chrX 42089645 42089989 -134884151 + L1MC2 LINE L1 4215 4552 -1874 585 189 27 61 chrX 42089990 42090138 -134884002 + HsTC2 DNA Tc2 532 674 -1224 * 1064 206 67 18 chrX 42090136 42090418 -134883722 + HsTC2 DNA Tc2 1328 1799 -99 4095 204 23 18 chrX 42090423 42090631 -134883509 + L1MC2 LINE L1 4544 4750 -1874 1952 148 3 0 chrX 42090631 42091097 -134883043 + AluSx SINE Alu 1 467 0 213 39 0 0 chrX 42091099 42091125 -134883015 + (GGAAA)n Simple_repeat Simple_repeat 5 30 0 4095 204 23 18 chrX 42091125 42092561 -134881579 + L1MC2 LINE L1 4750 6195 -429 * 8035 140 13 14 chrX 42092559 42095031 -134879109 + L1MA2 LINE L1 3835 6303 -1 13651 30 2 0 chrX 42095145 42096758 -134877382 - L1PA3 LINE L1 -1503 4643 3028 7934 19 0 1 chrX 42096758 42098272 -134875868 + L1PA3 LINE L1 4640 6152 -3 188 278 25 62 chrX 42099897 42100059 -134874081 + L2 LINE L2 2898 3053 -219 201 39 0 0 chrX 42100507 42100533 -134873607 + (GTGTG)n Simple_repeat Simple_repeat 5 30 0 502 287 48 30 chrX 42102315 42102545 -134871595 + MIR SINE MIR 7 240 -22 256 289 86 23 chrX 42102659 42102787 -134871353 - MIR3 SINE MIR -65 143 8 303 272 49 37 chrX 42102933 42103095 -134871045 - MER5A DNA MER1_type -2 187 24 281 235 82 0 chrX 42103311 42103409 -134870731 + (TTCA)n Simple_repeat Simple_repeat 2 107 0 739 319 85 17 chrX 42103411 42103881 -134870259 - LTR33 LTR ERVL 0 521 20 260 316 164 6 chrX 42104977 42105148 -134868992 - MIR SINE MIR -12 250 53 1621 282 52 47 chrX 42106119 42106864 -134867276 + ERVL LTR ERVL 3205 3953 -1811 205 242 48 0 chrX 42106875 42106937 -134867203 - MIR SINE MIR -2 260 196 451 267 38 2 chrX 42106944 42107157 -134866983 + ERVL LTR ERVL 3967 4222 -1542 829 147 88 20 chrX 42107158 42107362 -134866778 + MER106B DNA MER1_type 827 1044 -15 184 312 109 26 chrX 42108433 42108699 -134865441 + L2 LINE L2 625 912 -2402 2936 10 0 0 chrX 42108988 42109299 -134864841 - AluY SINE Alu 0 311 1 580 234 36 7 chrX 42110073 42110210 -134863930 + MER117 DNA MER1_type 1 141 -56 431 216 63 33 chrX 42111028 42111189 -134862951 + MIR SINE MIR 47 224 -38 203 255 0 0 chrX 42111845 42111896 -134862244 + (TG)n Simple_repeat Simple_repeat 2 52 0 279 261 140 6 chrX 42111935 42112101 -134862039 + MIR SINE MIR 40 226 -36 475 296 68 11 chrX 42112175 42112351 -134861789 + MIR SINE MIR 20 205 -57 224 211 0 35 chrX 42112407 42112464 -134861676 + (CATA)n Simple_repeat Simple_repeat 4 58 0 219 252 42 67 chrX 42113227 42113346 -134860794 + MIR SINE MIR 39 142 -66 224 316 0 0 chrX 42114019 42114095 -134860045 + MIR SINE MIR 176 251 -11 283 324 17 28 chrX 42114183 42114359 -134859781 + MIR3 SINE MIR 2 175 -33 273 277 69 28 chrX 42115511 42115662 -134858478 + MIR SINE MIR 70 230 -32 207 333 137 17 chrX 42115707 42115824 -134858316 + L2 LINE L2 3142 3272 0 533 229 146 62 chrX 42118572 42118943 -134855197 - L1ME4a LINE L1 -2 6119 5718 304 315 64 18 chrX 42119083 42119302 -134854838 - L1ME4a LINE L1 -946 5200 4972 1525 328 38 36 chrX 42119945 42120687 -134853453 - L2 LINE L2 -520 2794 2048 2223 115 6 13 chrX 42120687 42121001 -134853139 + AluSx SINE Alu 1 312 0 1525 328 38 36 chrX 42121001 42121180 -134852960 - L2 LINE L2 -1266 2048 1871 547 220 0 18 chrX 42121188 42121297 -134852843 + MLT1J LTR MaLR 1 107 -404 473 293 130 17 chrX 42121292 42121485 -134852655 + MLT1J LTR MaLR 300 610 -5 * 291 28 0 0 chrX 42122787 42122823 -134851317 + (TC)n Simple_repeat Simple_repeat 2 37 0 1741 137 0 70 chrX 42122838 42123137 -134851003 - AluJb SINE Alu -34 278 1 345 319 35 7 chrX 42123483 42123627 -134850513 - MIR SINE MIR -112 150 3 357 252 62 62 chrX 42123821 42124079 -134850061 - HAL1 LINE L1 0 2507 2250 335 241 76 32 chrX 42124206 42124364 -134849776 - HAL1b LINE L1 -437 911 747 303 261 0 11 chrX 42124413 42124501 -134849639 - HAL1 LINE L1 -347 2160 2074 315 0 0 0 chrX 42124652 42124687 -134849453 + (CA)n Simple_repeat Simple_repeat 2 36 0 1240 221 70 105 chrX 42124736 42124962 -134849178 - L2 LINE L2 0 3313 3081 1321 88 5 0 chrX 42124962 42125156 -134848984 + L1MA4A LINE L1 6107 6301 -2 1240 221 70 105 chrX 42125156 42125642 -134848498 - L2 LINE L2 -232 3081 2611 1039 287 65 42 chrX 42125675 42125760 -134848380 - HAL1 LINE L1 -1127 1380 1298 1910 143 0 17 chrX 42125760 42126054 -134848086 - AluJo SINE Alu -23 289 1 1039 287 65 42 chrX 42126054 42126539 -134847601 - HAL1 LINE L1 -1209 1298 797 1128 207 51 8 chrX 42127050 42127287 -134846853 - MIR SINE MIR -13 249 3 471 264 153 0 chrX 42128114 42128277 -134845863 - MIR SINE MIR -13 249 62 507 270 151 0 chrX 42128588 42128740 -134845400 + MER5A DNA MER1_type 9 183 -6 713 271 39 27 chrX 42129217 42129374 -134844766 + MIR SINE MIR 2 165 -97 2444 90 3 0 chrX 42129374 42129684 -134844456 - AluY SINE Alu 0 311 1 713 271 39 27 chrX 42129684 42129784 -134844356 + MIR SINE MIR 165 262 0 269 339 40 16 chrX 42129789 42129913 -134844227 - L2 LINE L2 -9 3263 3137 1656 177 25 0 chrX 42129923 42130205 -134843935 + AluJo SINE Alu 1 289 -23 433 221 52 52 chrX 42130616 42130788 -134843352 - Charlie7 DNA MER1_type -1 2611 2440 264 328 45 80 chrX 42131207 42131408 -134842732 - MER91A DNA MER1_type -2 194 1 211 233 58 58 chrX 42132046 42132132 -134842008 + MIR SINE MIR 89 174 -88 319 279 0 0 chrX 42132421 42132500 -134841640 - L2 LINE L2 -5 3308 3230 * 931 242 79 29 chrX 42132476 42132753 -134841387 - L2 LINE L2 -730 2584 2294 1056 32 8 0 chrX 42132756 42132881 -134841259 - L1PA2 LINE L1 -252 5903 5778 559 0 0 0 chrX 42132881 42132946 -134841194 + L1PA3 LINE L1 6088 6152 -3 718 201 26 123 chrX 42132956 42133225 -134840915 - L2 LINE L2 -1018 2296 2054 180 350 36 77 chrX 42133239 42133433 -134840707 + L2 LINE L2 2995 3180 -92 23 0 0 0 chrX 42133519 42133542 -134840598 + AT_rich Low_complexity Low_complexity 1 23 0 216 185 56 19 chrX 42133805 42133859 -134840281 + MIR SINE MIR 111 166 -96 223 225 34 56 chrX 42133933 42134022 -134840118 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 343 333 124 0 chrX 42134177 42134354 -134839786 + MIR SINE MIR 52 250 -12 335 264 49 37 chrX 42135748 42135911 -134838229 + MER5A DNA MER1_type 23 187 -2 256 289 86 23 chrX 42136057 42136185 -134837955 + MIR3 SINE MIR 8 143 -65 563 284 47 30 chrX 42136299 42136531 -134837609 - MIR SINE MIR -22 240 5 192 40 0 0 chrX 42137013 42137038 -134837102 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 238 283 36 78 chrX 42138704 42138870 -134835270 - L2 LINE L2 -219 3053 2895 21119 157 19 16 chrX 42140575 42143504 -134830636 - L1MA2 LINE L1 0 7723 4805 5613 115 22 2 chrX 42143504 42143667 -134830473 - L1PA13 LINE L1 0 6163 6005 2204 112 3 0 chrX 42143667 42143953 -134830187 - AluSp SINE Alu -26 287 1 5613 115 22 2 chrX 42143953 42145183 -134828957 - L1PA13 LINE L1 -158 6005 4804 21119 157 19 16 chrX 42145183 42147593 -134826547 - L1MA2 LINE L1 -2918 4805 2344 2259 110 7 0 chrX 42147593 42147892 -134826248 + AluSx SINE Alu 1 301 -11 21119 157 19 16 chrX 42147892 42150226 -134823914 - L1MA2 LINE L1 -5379 2344 19 2226 239 20 9 chrX 42152754 42153057 -134821083 + L1MCb LINE L1 500 813 -5232 1494 174 8 0 chrX 42153057 42153304 -134820836 + AluJb SINE Alu 41 289 -23 2226 239 20 9 chrX 42153304 42153549 -134820591 + L1MCb LINE L1 813 1054 -4991 5753 119 1 14 chrX 42153569 42154432 -134819708 - L1PA15 LINE L1 -3 6162 5311 3325 186 92 10 chrX 42154432 42155686 -134818454 + L1MCb LINE L1 1050 2502 -4062 * 38734 37 31 2 chrX 42155683 42160380 -134813760 + L1P LINE L1 2 4837 -1309 993 43 0 0 chrX 42160382 42160497 -134813643 + AluYb8 SINE Alu 198 312 -6 8007 17 0 0 chrX 42160497 42161828 -134812312 + L1PA2 LINE L1 4824 6154 -1 2693 223 9 47 chrX 42161840 42162667 -134811473 + L1MCb LINE L1 2508 3298 -3266 820 267 20 16 chrX 42162974 42163221 -134810919 + MIR SINE MIR 3 250 -12 10042 36 3 0 chrX 42163699 42165648 -134808492 + L1PA5 LINE L1 4203 6154 0 1012 174 5 47 chrX 42165766 42165978 -134808162 + MER3 DNA MER1_type 7 209 0 408 20 0 0 chrX 42169229 42169278 -134804862 + (CTTG)n Simple_repeat Simple_repeat 2 50 0 266 122 0 0 chrX 42169278 42169319 -134804821 + MIR SINE MIR 84 124 -138 629 246 104 17 chrX 42169589 42169829 -134804311 - MIR SINE MIR 0 262 2 185 265 12 60 chrX 42169839 42169922 -134804218 + L3 LINE CR1 1280 1358 -219 737 297 7 19 chrX 42169930 42170240 -134803900 + L2 LINE L2 2459 2764 -550 391 245 33 54 chrX 42170469 42170653 -134803487 - MIR3 SINE MIR -7 201 22 265 226 26 41 chrX 42170599 42170711 -134803429 + MIR SINE MIR 79 150 -58 * 239 281 19 5 chrX 42171035 42171160 -134802980 + MIR SINE MIR 21 126 -82 370 188 32 85 chrX 42171174 42171303 -134802837 + L1ME LINE L1 5635 5756 -410 427 305 116 4 chrX 42173856 42174089 -134800051 + L2 LINE L2 621 879 -2435 2006 138 3 23 chrX 42174174 42174479 -134799661 - AluJo SINE Alu -13 299 1 267 330 0 10 chrX 42178018 42178115 -134796025 + (CCCCAG)n Simple_repeat Simple_repeat 2 97 0 354 244 0 12 chrX 42178313 42178399 -134795741 + MIR SINE MIR 48 132 -130 1695 194 10 44 chrX 42178427 42178814 -134795326 + MLT1A2 LTR MaLR 1 374 0 202 309 151 24 chrX 42179797 42179923 -134794217 + L3 LINE CR1 1348 1489 -88 219 270 47 61 chrX 42180490 42180638 -134793502 + MIR SINE MIR 39 184 -78 265 276 0 0 chrX 42181296 42181372 -134792768 + MIR SINE MIR 176 251 -11 282 265 29 66 chrX 42181507 42181643 -134792497 + MIR3 SINE MIR 50 180 -28 308 194 1 61 chrX 42182589 42182678 -134791462 + MIR SINE MIR 61 141 -67 208 353 80 27 chrX 42182800 42182950 -134791190 + L2 LINE L2 3114 3271 -1 1564 225 54 21 chrX 42186605 42187028 -134787112 + L1 LINE L1 2314 2750 -3396 188 65 0 32 chrX 42187029 42187060 -134787080 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 12604 29 2 0 chrX 42187060 42189266 -134784874 - L1PA3 LINE L1 -24 6131 3921 7097 183 51 8 chrX 42189275 42190804 -134783336 + L1 LINE L1 2740 4334 -1812 2494 95 11 16 chrX 42190812 42191174 -134782966 - L1PB1 LINE L1 -2 6149 5787 279 0 0 0 chrX 42191174 42191205 -134782935 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 318 26 0 0 chrX 42191204 42191243 -134782897 + (TG)n Simple_repeat Simple_repeat 2 40 0 2494 95 11 16 chrX 42191205 42191250 -134782890 - L1PB1 LINE L1 -364 5787 5782 226 155 0 52 chrX 42191288 42191346 -134782794 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 334 39 0 0 chrX 42191346 42191397 -134782743 - L1MA2 LINE L1 -151 6153 6103 321 221 41 8 chrX 42191397 42191519 -134782621 + (TA)n Simple_repeat Simple_repeat 1 126 0 218 202 0 67 chrX 42191522 42191700 -134782440 + (TATATG)n Simple_repeat Simple_repeat 2 167 0 301 233 12 23 chrX 42191703 42191789 -134782351 + (CATATA)n Simple_repeat Simple_repeat 5 89 0 320 147 11 68 chrX 42191791 42191968 -134782172 + (TATATG)n Simple_repeat Simple_repeat 3 169 0 474 247 0 33 chrX 42191984 42192331 -134781809 + (TA)n Simple_repeat Simple_repeat 1 335 0 474 247 0 33 chrX 42192347 42192529 -134781611 + (TA)n Simple_repeat Simple_repeat 1 176 0 474 247 0 33 chrX 42192544 42192726 -134781414 + (TA)n Simple_repeat Simple_repeat 1 176 0 * 508 151 0 78 chrX 42192665 42192857 -134781283 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 3882 71 26 11 chrX 42192873 42193426 -134780714 + L1P5 LINE L1 5236 5795 -356 44 35 0 0 chrX 42193452 42193510 -134780630 + AT_rich Low_complexity Low_complexity 1 58 0 360 43 93 37 chrX 42193513 42193674 -134780466 + (TA)n Simple_repeat Simple_repeat 2 171 0 3880 160 45 15 chrX 42193674 42194900 -134779240 - L1ME4a LINE L1 -157 5964 4713 395 296 99 56 chrX 42194898 42195341 -134778799 + L1MC3 LINE L1 5434 5895 -1913 * 333 333 42 57 chrX 42195383 42195805 -134778335 + L1ME LINE L1 20 427 -5643 1191 72 0 0 chrX 42195888 42196068 -134778072 + (TA)n Simple_repeat Simple_repeat 1 180 0 1271 265 63 28 chrX 42196078 42196833 -134777307 + L1ME LINE L1 464 1215 -4865 7961 19 14 0 chrX 42196863 42198237 -134775903 - L1PA3 LINE L1 0 6155 4773 3074 91 10 0 chrX 42198255 42198673 -134775467 - L1PA8 LINE L1 -15 6157 5736 3995 196 98 130 chrX 42198674 42199289 -134774851 + L1MC3 LINE L1 6045 6678 -1107 1974 125 11 0 chrX 42199289 42199553 -134774587 + AluSx SINE Alu 1 267 -45 3995 196 98 130 chrX 42199553 42200126 -134774014 + L1MC3 LINE L1 6678 7242 -543 298 234 26 13 chrX 42200126 42200206 -134773934 + MLT1F1 LTR MaLR 50 133 -442 3995 196 98 130 chrX 42200206 42200726 -134773414 + L1MC3 LINE L1 7242 7777 -8 1563 108 50 0 chrX 42200743 42201001 -134773139 - L1MA3 LINE L1 0 6305 6035 7416 28 1 0 chrX 42201015 42201870 -134772270 - L1PA3 LINE L1 0 6155 5300 3269 110 28 6 chrX 42201873 42202375 -134771765 - L1PA16 LINE L1 0 6166 5654 1924 222 48 31 chrX 42202741 42203286 -134770854 - L1ME3A LINE L1 -5 6165 5612 2678 202 43 10 chrX 42203722 42204231 -134769909 - REP3 LTR ERV 0 562 37 448 283 0 9 chrX 42204502 42204615 -134769525 + MER81 DNA DNA 1 112 -2 2159 114 4 0 chrX 42204808 42205112 -134769028 - AluSx SINE Alu 0 305 1 376 276 145 7 chrX 42205130 42205275 -134768865 - MIR SINE MIR -91 171 7 446 293 0 21 chrX 42205559 42205699 -134768441 - MER89-int LTR ERV1 -399 6402 6266 2015 123 70 22 chrX 42206900 42207257 -134766883 + THE1C LTR MaLR 2 375 0 276 228 114 73 chrX 42207589 42207712 -134766428 - HERVL40 LTR ERVL -2337 2686 2559 513 332 58 42 chrX 42208019 42208399 -134765741 - HERVL40 LTR ERVL -2655 2875 2490 16754 167 27 17 chrX 42209140 42210205 -134763935 - L1 LINE L1 -3386 3462 2409 3224 100 2 2 chrX 42210205 42210653 -134763487 + L1PA16 LINE L1 5710 6157 -9 16754 167 27 17 chrX 42210653 42213007 -134761133 - L1 LINE L1 -4439 2409 7 6032 107 21 0 chrX 42213258 42213813 -134760327 - L1PA13 LINE L1 -1 6477 5935 298 22 65 0 chrX 42213813 42213859 -134760281 + T-rich Low_complexity Low_complexity 2 50 0 6032 107 21 0 chrX 42213859 42214394 -134759746 - L1PA13 LINE L1 -543 5935 5374 11069 177 48 51 chrX 42214396 42217223 -134756917 - L1PA13 LINE L1 -1224 5237 2334 280 57 0 0 chrX 42217223 42217258 -134756882 + U2 snRNA snRNA 1 35 -153 11069 177 48 51 chrX 42217258 42218489 -134755651 - L1PA13 LINE L1 -4127 2334 1101 1257 132 4 53 chrX 42218488 42218731 -134755409 - L1PA13 LINE L1 -5639 236 6 * 2074 158 63 55 chrX 42219544 42220037 -134754103 + L1MB1 LINE L1 5671 6167 -1 669 199 36 0 chrX 42220052 42220218 -134753922 + L1M4 LINE L1 4909 5080 -1066 2444 178 7 2 chrX 42220318 42220761 -134753379 + L1PA12 LINE L1 11 455 -7126 959 149 0 11 chrX 42220765 42220939 -134753201 + L1MB8 LINE L1 5996 6167 -11 303 227 45 0 chrX 42221051 42221117 -134753023 - L1MDa LINE L1 -6393 147 79 2151 231 43 84 chrX 42221226 42221685 -134752455 - L1MD2 LINE L1 -62 6104 5628 5237 32 13 0 chrX 42221685 42222305 -134751835 + L1PA4 LINE L1 5525 6152 -3 2151 231 43 84 chrX 42222305 42222955 -134751185 - L1MD2 LINE L1 -538 5628 5048 1968 136 3 20 chrX 42222956 42223258 -134750882 - AluSg SINE Alu -11 299 3 600 244 52 28 chrX 42223262 42223512 -134750628 - L1MD2 LINE L1 -2136 4010 3755 35963 44 2 2 chrX 42223564 42228196 -134745944 + L1P LINE L1 1 4631 -1515 390 284 114 56 chrX 42229294 42229635 -134744505 - MER89-int LTR ERV1 -4591 2210 1850 286 226 27 116 chrX 42230511 42230657 -134743483 - MER89-int LTR ERV1 -5829 972 840 448 149 0 0 chrX 42231334 42231408 -134742732 - AluJ/FRAM SINE Alu -13 299 226 1545 272 63 20 chrX 42231551 42232102 -134742038 - MER90 LTR ERV1 0 575 1 1588 239 81 18 chrX 42232107 42233173 -134740967 + L1MCc LINE L1 1035 2181 -4760 657 241 103 9 chrX 42233194 42233418 -134740722 + L1M4 LINE L1 234 478 -6591 * 879 243 35 3 chrX 42233412 42233696 -134740444 + L1M4 LINE L1 4641 4933 -2234 1888 208 136 81 chrX 42233774 42234304 -134739836 + MLT1E2 LTR MaLR 96 626 0 254 203 33 111 chrX 42234304 42234457 -134739683 + L1M4 LINE L1 4929 5069 -2098 816 211 53 40 chrX 42234530 42234829 -134739311 + L1M4 LINE L1 5098 5400 -1767 33 0 0 0 chrX 42234904 42234937 -134739203 + AT_rich Low_complexity Low_complexity 1 33 0 330 26 0 0 chrX 42235114 42235153 -134738987 + (CA)n Simple_repeat Simple_repeat 2 40 0 320 375 33 53 chrX 42235935 42236180 -134737960 + L1M4b LINE L1 1497 1736 -5432 11340 208 29 50 chrX 42236261 42237286 -134736854 + L1M4b LINE L1 1786 2831 -4336 631 206 0 37 chrX 42237286 42237422 -134736718 + FLAM_C SINE Alu 1 131 -2 11340 208 29 50 chrX 42237422 42237488 -134736652 + L1M4b LINE L1 2831 2897 -4270 2092 126 7 7 chrX 42237488 42237781 -134736359 + AluSx SINE Alu 1 293 -19 11340 208 29 50 chrX 42237781 42241173 -134732967 + L1M4b LINE L1 2897 5867 -1300 915 223 110 56 chrX 42241176 42241531 -134732609 + MSTB2 LTR MaLR 1 374 -83 1472 171 24 0 chrX 42241532 42241830 -134732310 + L1M4b LINE L1 5920 6224 -943 * 15051 50 6 8 chrX 42241826 42242248 -134731892 - L1P LINE L1 -2898 3248 2826 2380 40 0 0 chrX 42242248 42242521 -134731619 - AluY SINE Alu 0 311 39 15051 50 6 8 chrX 42242521 42244148 -134729992 - L1P LINE L1 -3320 2826 1204 * 15801 59 1 0 chrX 42244144 42246682 -134727458 + L1PA4 LINE L1 3245 5785 -370 40861 51 1 3 chrX 42246682 42252888 -134721252 + L1PA4 LINE L1 1 6189 0 3239 29 0 0 chrX 42252888 42253271 -134720869 + L1PA4 LINE L1 5771 6153 -2 3361 183 15 3 chrX 42253275 42254022 -134720118 + L1MA8 LINE L1 6216 6970 -342 1046 104 0 0 chrX 42254023 42254177 -134719963 + MER41A LTR ERV1 400 553 -1 4431 106 34 27 chrX 42254264 42255080 -134719060 + MER41A-int LTR ERV1 1 1471 -5242 1022 136 0 8 chrX 42255072 42255251 -134718889 + PABL_A-int LTR ERV1 929 3252 -4564 * 264 59 0 0 chrX 42255252 42255286 -134718854 + (TC)n Simple_repeat Simple_repeat 1 34 0 495 0 0 0 chrX 42255286 42255341 -134718799 + (TG)n Simple_repeat Simple_repeat 2 56 0 12317 117 32 17 chrX 42255341 42255943 -134718197 + PABL_A-int LTR ERV1 1359 1950 -3996 1578 66 5 9 chrX 42255943 42256155 -134717985 - L1PA7 LINE L1 0 6154 5944 12317 117 32 17 chrX 42256155 42258532 -134715608 + PABL_A-int LTR ERV1 1950 5695 -251 204 40 0 0 chrX 42258532 42258557 -134715583 + (TA)n Simple_repeat Simple_repeat 2 26 0 6991 56 7 0 chrX 42258558 42259826 -134714314 - L1PA7 LINE L1 -19 6135 4860 6715 148 17 13 chrX 42259826 42261079 -134713061 - L1P3 LINE L1 -4036 2425 1168 615 141 0 0 chrX 42261083 42261175 -134712965 - L1P3 LINE L1 -6365 96 5 1648 71 76 4 chrX 42261181 42261419 -134712721 + MER41A-int LTR ERV1 5690 5944 -2 3343 80 9 0 chrX 42261419 42261881 -134712259 + MER41A LTR ERV1 1 466 -88 1743 147 39 6 chrX 42261886 42262219 -134711921 + L1MA8 LINE L1 6957 7300 -12 552 314 41 8 chrX 42262231 42262597 -134711543 - L1MCb LINE L1 -3453 3111 2734 3074 210 23 48 chrX 42262612 42263894 -134710246 - L1MCb LINE L1 -4829 1735 500 20952 169 23 19 chrX 42266399 42271154 -134702986 + L1M1 LINE L1 13 4748 -2817 5919 126 11 6 chrX 42271154 42272481 -134701659 + L1PA13 LINE L1 4812 6163 0 20952 169 23 19 chrX 42272481 42272556 -134701584 + L1M1 LINE L1 4748 4821 -2744 2016 161 0 0 chrX 42272556 42272866 -134701274 + AluSx SINE Alu 1 310 -2 20952 169 23 19 chrX 42272866 42273255 -134700885 + L1M1 LINE L1 4821 5253 -2312 231 219 47 16 chrX 42273255 42273319 -134700821 + MIR SINE MIR 104 169 -93 215 240 135 33 chrX 42273393 42273513 -134700627 - MIR3 SINE MIR -54 154 20 24 67 0 0 chrX 42273765 42273810 -134700330 + AT_rich Low_complexity Low_complexity 1 45 0 681 247 126 17 chrX 42274003 42274234 -134699906 - MIR SINE MIR -2 260 5 459 313 14 27 chrX 42274474 42274621 -134699519 + MIR3 SINE MIR 3 147 -61 865 286 48 66 chrX 42274705 42275083 -134699057 + L1MEd LINE L1 506 876 -5654 27184 39 3 1 chrX 42275084 42279109 -134695031 + L1PA4 LINE L1 2118 6149 -6 2096 263 86 36 chrX 42279099 42280129 -134694011 + L1MEd LINE L1 860 2040 -861 * 2376 81 0 0 chrX 42280179 42280523 -134693617 + AluY SINE Alu 1 311 0 909 263 75 45 chrX 42280968 42281453 -134692687 + L1MEd LINE L1 2384 2886 -3654 422 65 16 0 chrX 42282401 42282463 -134691677 + (TG)n Simple_repeat Simple_repeat 1 63 0 201 121 0 0 chrX 42282711 42282744 -134691396 + (TG)n Simple_repeat Simple_repeat 2 34 0 375 273 45 39 chrX 42283425 42283579 -134690561 + MIR SINE MIR 91 245 -17 529 305 76 76 chrX 42283825 42284140 -134690000 + L2 LINE L2 2945 3259 -13 220 330 0 0 chrX 42284265 42284353 -134689787 + (TA)n Simple_repeat Simple_repeat 1 88 0 592 320 51 75 chrX 42284566 42284636 -134689504 + L2 LINE L2 2461 2531 -741 2069 145 3 0 chrX 42284636 42284932 -134689208 - AluJb SINE Alu -15 297 1 592 320 51 75 chrX 42284932 42285688 -134688452 + L2 LINE L2 2531 3268 -4 288 0 0 0 chrX 42286134 42286166 -134687974 + (GA)n Simple_repeat Simple_repeat 2 33 0 390 181 0 42 chrX 42286221 42286293 -134687847 - Zaphod DNA AcHobo 0 4031 3963 * 522 340 57 57 chrX 42286290 42286608 -134687532 - MER115 DNA AcHobo -266 427 110 327 316 133 5 chrX 42287585 42287781 -134686359 + MIR SINE MIR 38 258 -4 211 307 173 8 chrX 42289411 42289538 -134684602 - L2 LINE L2 -4 3268 3121 222 162 147 44 chrX 42289548 42289616 -134684524 - L2 LINE L2 -3 3269 3195 410 248 137 59 chrX 42290112 42290265 -134683875 - MIR SINE MIR -13 249 85 65 0 0 0 chrX 42290770 42290835 -134683305 + AT_rich Low_complexity Low_complexity 1 65 0 2250 107 3 7 chrX 42290941 42291251 -134682889 + AluSx SINE Alu 1 309 -3 500 269 160 6 chrX 42291716 42291872 -134682268 - MER91A DNA MER1_type -8 188 9 254 325 25 50 chrX 42291869 42291989 -134682151 + MIR SINE MIR 49 165 -97 * 364 273 54 54 chrX 42292334 42292518 -134681622 + MIR3 SINE MIR 7 190 -66 461 294 75 48 chrX 42292689 42292876 -134681264 - MIR3 SINE MIR -10 198 7 343 247 43 11 chrX 42293042 42293135 -134681005 - MIR3 SINE MIR -28 180 85 493 348 124 53 chrX 42293420 42294238 -134679902 + L2 LINE L2 2383 3272 0 275 341 244 24 chrX 42294264 42294510 -134679630 + L3 LINE CR1 1277 1576 -1 334 308 136 28 chrX 42294611 42294825 -134679315 + MIR SINE MIR 20 256 -6 424 260 75 12 chrX 42295873 42296023 -134678117 - MIR3 SINE MIR -64 144 6 769 291 16 24 chrX 42296237 42296488 -134677652 + MIR SINE MIR 9 257 -5 507 295 32 21 chrX 42297766 42297956 -134676184 - MIR SINE MIR -64 198 7 301 267 89 40 chrX 42298001 42298102 -134676038 - MIR SINE MIR -73 135 30 223 341 62 16 chrX 42298247 42298376 -134675764 - L2 LINE L2 0 3272 3138 205 330 36 54 chrX 42298563 42298675 -134675465 - L2 LINE L2 -293 2979 2870 440 342 72 47 chrX 42298962 42299240 -134674900 + L2 LINE L2 2968 3252 -20 206 329 25 19 chrX 42299262 42299420 -134674720 + GA-rich Low_complexity Low_complexity 4 162 0 475 285 39 15 chrX 42299474 42299604 -134674536 + MIR3 SINE MIR 11 143 -65 222 262 16 0 chrX 42299616 42299677 -134674463 + (TAA)n Simple_repeat Simple_repeat 1 62 0 201 323 46 0 chrX 42299750 42299815 -134674325 + L2 LINE L2 3244 3311 -2 598 283 89 27 chrX 42300140 42300531 -134673609 + L1MCa LINE L1 51 424 -5999 4217 208 119 67 chrX 42300915 42301247 -134672893 + L1MCa LINE L1 1148 1461 -5480 1106 168 35 0 chrX 42301247 42301449 -134672691 - L1PA16 LINE L1 -1 6165 5957 4217 208 119 67 chrX 42301449 42302913 -134671227 + L1MCa LINE L1 1461 3038 -3903 291 71 0 0 chrX 42303405 42303447 -134670693 + (TCTCCC)n Simple_repeat Simple_repeat 3 44 0 6352 232 94 22 chrX 42303744 42304077 -134670063 + L1PB2 LINE L1 775 1083 -5328 8195 19 5 0 chrX 42304077 42305190 -134668950 + L1PA3 LINE L1 5040 6155 0 6352 232 94 22 chrX 42305190 42305821 -134668319 + L1PB2 LINE L1 1083 1667 -4744 2198 140 12 93 chrX 42305821 42306250 -134667890 + MSTD LTR MaLR 1 394 -2 6352 232 94 22 chrX 42306250 42306614 -134667526 + L1PB2 LINE L1 1667 2003 -4408 2092 141 0 0 chrX 42306614 42306918 -134667222 - AluSx SINE Alu -8 304 1 6352 232 94 22 chrX 42306918 42307049 -134667091 + L1PB2 LINE L1 2003 2123 -4288 24139 31 1 1 chrX 42307049 42310551 -134663589 - L1PA3 LINE L1 -3 6152 2650 6352 232 94 22 chrX 42310551 42312350 -134661790 + L1PB2 LINE L1 2123 6411 0 8125 194 120 76 chrX 42312355 42314108 -134660032 + L1MD3 LINE L1 4700 6374 -1621 357 82 0 0 chrX 42314108 42314157 -134659983 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 8125 194 120 76 chrX 42314157 42314543 -134659597 + L1MD3 LINE L1 6374 6742 -1253 2000 155 42 9 chrX 42314543 42314878 -134659262 + L1MC1 LINE L1 5987 6332 -1 8125 194 120 76 chrX 42314878 42315235 -134658905 + L1MD3 LINE L1 6742 7082 -913 646 214 8 0 chrX 42315235 42315361 -134658779 + MLT1F1 LTR MaLR 5 131 -436 8125 194 120 76 chrX 42315361 42315897 -134658243 + L1MD3 LINE L1 7082 7985 -10 434 253 97 26 chrX 42316145 42316299 -134657841 + L1MEd LINE L1 438 602 -5952 1996 227 45 61 chrX 42316390 42316993 -134657147 + MLT1E LTR MaLR 1 593 0 222 37 0 0 chrX 42317024 42317051 -134657089 + (CA)n Simple_repeat Simple_repeat 2 28 0 301 238 33 90 chrX 42317283 42317405 -134656735 + L1MEd LINE L1 851 965 -5589 414 0 0 0 chrX 42317420 42317466 -134656674 + (CA)n Simple_repeat Simple_repeat 2 47 0 781 273 41 43 chrX 42317477 42318382 -134655758 + L1MEd LINE L1 1168 2160 -4585 581 254 18 14 chrX 42318438 42318623 -134655517 + L1MEd LINE L1 10 156 -5889 1657 260 44 19 chrX 42318695 42319131 -134655009 + L1MEd LINE L1 3767 4225 -2339 1524 176 109 10 chrX 42319131 42319444 -134654696 - MER2 DNA MER2_type 0 344 1 1657 260 44 19 chrX 42319444 42319642 -134654498 + L1MEd LINE L1 4225 4417 -2147 917 182 164 17 chrX 42319661 42319892 -134654248 - MER93b LTR ERV1 -28 345 81 5947 96 16 16 chrX 42319892 42320753 -134653387 - L1PA13 LINE L1 -28 6135 5275 1075 243 30 32 chrX 42320751 42321089 -134653051 + L1MEd LINE L1 4407 4743 -1821 * 2544 232 37 49 chrX 42321094 42321835 -134652305 + L1ME LINE L1 4 802 -6057 1385 215 129 11 chrX 42321860 42322020 -134652120 + L1ME LINE L1 869 1009 -5850 203 0 37 0 chrX 42322020 42322047 -134652093 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1385 215 129 11 chrX 42322047 42322258 -134651882 + L1ME LINE L1 1009 1284 -5575 2581 243 38 41 chrX 42322352 42322882 -134651258 + L1ME LINE L1 2569 3099 -3858 844 142 0 30 chrX 42322882 42323016 -134651124 + FLAM_C SINE Alu 4 133 0 2581 243 38 41 chrX 42323016 42323622 -134650518 + L1ME LINE L1 3099 3678 -3279 * 7485 213 20 42 chrX 42323614 42325631 -134648509 + L1ME LINE L1 3912 5883 -1074 1916 134 48 6 chrX 42325631 42325966 -134648174 + L1MB7 LINE L1 5834 6182 -2 2321 253 119 80 chrX 42325968 42328219 -134645921 + L1ME3A LINE L1 2284 4446 -1700 258 32 0 0 chrX 42328219 42328250 -134645890 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 348 64 0 0 chrX 42328249 42328296 -134645844 + (TG)n Simple_repeat Simple_repeat 2 48 0 2321 253 119 80 chrX 42328250 42328396 -134645744 + L1ME3A LINE L1 4446 4727 -1419 538 251 144 16 chrX 42328393 42328580 -134645560 + L1ME3A LINE L1 5675 5885 -285 * 188 183 100 17 chrX 42328581 42328641 -134645499 - MIR SINE MIR -31 231 167 305 277 48 0 chrX 42328889 42328972 -134645168 - L2 LINE L2 -18 3254 3168 812 273 64 0 chrX 42329004 42329224 -134644916 - MIR SINE MIR -4 258 25 715 264 14 14 chrX 42332219 42332427 -134641713 + MIR SINE MIR 1 208 -54 341 306 102 38 chrX 42332661 42332818 -134641322 - MIR3 SINE MIR -32 176 10 209 262 66 0 chrX 42333052 42333113 -134641027 - MIR SINE MIR -69 139 75 336 352 79 42 chrX 42333408 42333789 -134640351 + L2 LINE L2 2843 3237 -35 214 308 0 56 chrX 42334673 42334780 -134639360 - MIR SINE MIR -82 180 80 490 238 0 16 chrX 42335494 42335616 -134638524 + L1ME LINE L1 6354 6473 -459 302 276 52 15 chrX 42335937 42336071 -134638069 - L2 LINE L2 0 3313 3175 821 249 65 4 chrX 42338526 42338755 -134635385 + MIR SINE MIR 1 243 -19 252 217 113 9 chrX 42339260 42339366 -134634774 + MIR3 SINE MIR 48 164 -44 245 270 131 15 chrX 42340006 42340143 -134633997 + MIR SINE MIR 58 210 -52 294 355 83 28 chrX 42340726 42341162 -134632978 - L2 LINE L2 -2 3270 2811 467 273 106 19 chrX 42341497 42341658 -134632482 + MER5B DNA MER1_type 4 178 0 509 312 44 34 chrX 42342148 42342443 -134631697 + L2 LINE L2 2375 2672 -642 230 267 0 17 chrX 42342611 42342671 -134631469 + L2 LINE L2 3255 3313 0 200 159 23 23 chrX 42342671 42342715 -134631425 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 327 212 168 35 chrX 42343062 42343175 -134630965 + MIR3 SINE MIR 58 185 -23 2114 128 16 0 chrX 42345002 42345308 -134628832 + AluSq SINE Alu 1 311 -2 2662 250 62 21 chrX 42346509 42347653 -134626487 + L2 LINE L2 2126 3310 -3 294 326 62 21 chrX 42347654 42347847 -134626293 - L2 LINE L2 -249 3023 2823 411 183 43 0 chrX 42347905 42347998 -134626142 - Charlie7 DNA MER1_type -5 2607 2511 400 141 141 84 chrX 42348002 42348144 -134625996 - Charlie7 DNA MER1_type -2455 157 8 249 342 180 4 chrX 42348150 42348378 -134625762 - L2 LINE L2 -558 2756 2489 843 219 11 11 chrX 42348590 42348777 -134625363 + MIR SINE MIR 59 245 -17 2396 86 0 19 chrX 42349216 42349529 -134624611 + AluSg SINE Alu 1 307 -3 464 333 56 61 chrX 42349689 42350101 -134624039 + L2 LINE L2 2848 3257 -15 523 189 85 108 chrX 42350939 42351198 -134622942 + MER112 DNA MER1_type 4 256 0 192 40 0 0 chrX 42352645 42352670 -134621470 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 588 65 0 0 chrX 42352669 42352746 -134621394 + (TG)n Simple_repeat Simple_repeat 2 78 0 527 266 106 32 chrX 42353075 42353263 -134620877 - MIR SINE MIR -49 213 12 382 257 52 22 chrX 42353542 42353678 -134620462 - MIR SINE MIR -121 141 2 794 218 48 0 chrX 42353922 42354110 -134620030 + MIR SINE MIR 65 261 -1 207 69 0 0 chrX 42354116 42354145 -134619995 + (CAT)n Simple_repeat Simple_repeat 2 30 0 374 274 9 19 chrX 42354854 42354960 -134619180 - MIR3 SINE MIR 0 208 104 300 366 71 0 chrX 42355166 42355278 -134618862 + L2 LINE L2 3153 3272 0 396 317 143 38 chrX 42355337 42355630 -134618510 - L2 LINE L2 -439 2875 2552 533 340 106 19 chrX 42355673 42356341 -134617799 - L2 LINE L2 -1390 1924 1199 576 335 87 20 chrX 42356452 42356960 -134617180 - L2 LINE L2 -1728 1586 1045 198 242 0 0 chrX 42358146 42358212 -134615928 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 424 301 15 39 chrX 42358289 42358496 -134615644 + MIR SINE MIR 32 236 -26 646 242 38 11 chrX 42358570 42358756 -134615384 - MIR SINE MIR -1 261 71 270 296 0 11 chrX 42358915 42359003 -134615137 + L1ME LINE L1 5528 5614 -507 900 303 80 13 chrX 42359017 42359674 -134614466 + L1MC4a LINE L1 5222 5906 -258 306 0 0 0 chrX 42359901 42359935 -134614205 + (TG)n Simple_repeat Simple_repeat 2 35 0 243 0 0 0 chrX 42362037 42362064 -134612076 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 2197 94 0 0 chrX 42362064 42362341 -134611799 - AluSg1 SINE Alu -32 277 1 236 353 24 0 chrX 42362927 42363012 -134611128 + MIR3 SINE MIR 3 89 -119 203 88 88 0 chrX 42363505 42363539 -134610601 + L2 LINE L2 3269 3305 -8 206 322 0 56 chrX 42363577 42363757 -134610383 + GA-rich Low_complexity Low_complexity 5 174 0 200 318 14 47 chrX 42363689 42363837 -134610303 + (CAGAGA)n Simple_repeat Simple_repeat 6 148 0 * 300 294 5 33 chrX 42364033 42364217 -134609923 + GA-rich Low_complexity Low_complexity 1 179 0 362 263 0 0 chrX 42364587 42364682 -134609458 + MIR SINE MIR 168 262 0 266 320 39 16 chrX 42364683 42364811 -134609329 + MIR SINE MIR 53 183 -79 831 259 29 17 chrX 42365556 42365795 -134608345 + MIR SINE MIR 20 261 -1 385 307 87 0 chrX 42365892 42366042 -134608098 + MIR3 SINE MIR 30 192 -16 490 252 16 8 chrX 42366096 42366219 -134607921 - MIR SINE MIR -129 133 10 209 146 49 0 chrX 42366918 42366959 -134607181 - MIR SINE MIR -92 116 74 338 301 0 27 chrX 42367252 42367398 -134606742 + GA-rich Low_complexity Low_complexity 1 142 0 311 295 8 8 chrX 42367434 42367556 -134606584 + GA-rich Low_complexity Low_complexity 2 123 0 228 317 62 12 chrX 42367888 42368008 -134606132 + MIR SINE MIR 28 147 -61 218 288 15 0 chrX 42368115 42368181 -134605959 + MIR SINE MIR 170 236 -26 * 941 261 39 0 chrX 42368180 42368414 -134605726 - MIR SINE MIR 0 262 20 207 256 23 35 chrX 42368450 42368536 -134605604 + CT-rich Low_complexity Low_complexity 1 85 0 715 272 68 62 chrX 42368714 42369181 -134604959 - L1MC/D LINE L1 -2021 5787 5318 465 246 156 12 chrX 42369194 42369361 -134604779 + MIR SINE MIR 2 192 -70 339 289 0 0 chrX 42369425 42369501 -134604639 - L2 LINE L2 0 3272 3197 251 322 47 86 chrX 42369598 42369831 -134604309 + L2 LINE L2 2958 3181 -91 257 263 0 13 chrX 42370485 42370561 -134603579 - L1ME LINE L1 -413 5708 5634 469 174 0 0 chrX 42370563 42370655 -134603485 - L1MB8 LINE L1 -26 6152 6061 3087 96 29 18 chrX 42371402 42371444 -134602696 - MLT2A2 LTR ERVL 0 453 413 180 0 0 0 chrX 42371444 42371464 -134602676 + (CA)n Simple_repeat Simple_repeat 2 21 0 3087 96 29 18 chrX 42371464 42371485 -134602655 - MLT2A2 LTR ERVL -40 413 394 312 120 0 0 chrX 42371485 42371535 -134602605 + (TA)n Simple_repeat Simple_repeat 2 51 0 3087 96 29 18 chrX 42371535 42371918 -134602222 - MLT2A2 LTR ERVL -59 394 1 287 373 44 6 chrX 42372067 42372225 -134601915 - L2 LINE L2 -219 3053 2890 735 257 69 0 chrX 42372338 42372513 -134601627 + MIR SINE MIR 11 197 -65 6125 23 0 0 chrX 42372516 42373263 -134600877 - L1PA4 LINE L1 -1500 4646 3900 7659 25 1 0 chrX 42373263 42374774 -134599366 + L1PA4 LINE L1 4644 6155 0 26 74 0 0 chrX 42375442 42375496 -134598644 + AT_rich Low_complexity Low_complexity 1 54 0 260 309 8 73 chrX 42375497 42375562 -134598578 - L2 LINE L2 -682 2632 2577 2556 148 29 7 chrX 42375562 42376009 -134598131 - MER65C LTR ERV1 -4 457 1 260 309 8 73 chrX 42376009 42376066 -134598074 - L2 LINE L2 -737 2577 2518 820 109 0 0 chrX 42376067 42376195 -134597945 + L1MB3 LINE L1 5704 5831 -352 304 241 80 0 chrX 42376448 42376560 -134597580 - MIR SINE MIR -122 140 20 2616 48 6 6 chrX 42376850 42377185 -134596955 - L1PA5 LINE L1 0 6154 5820 1978 126 45 14 chrX 42377185 42377542 -134596598 + L1MB3 LINE L1 5814 6181 -2 2498 69 0 0 chrX 42377785 42378090 -134596050 - AluY SINE Alu -6 305 1 5821 163 34 12 chrX 42378585 42379117 -134595023 + L1PB1 LINE L1 3960 4478 -1673 2517 18 0 0 chrX 42379117 42379393 -134594747 + AluYa5 SINE Alu 36 311 0 5821 163 34 12 chrX 42379393 42380395 -134593745 + L1PB1 LINE L1 4478 5555 -596 2008 100 11 4 chrX 42380395 42380712 -134593428 + AluSp SINE Alu 1 319 0 5821 163 34 12 chrX 42380712 42381323 -134592817 + L1PB1 LINE L1 5555 6151 0 449 318 81 67 chrX 42382560 42382803 -134591337 - L2 LINE L2 0 3272 3034 228 100 0 0 chrX 42382803 42382843 -134591297 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2215 100 0 0 chrX 42382843 42383123 -134591017 - AluSx SINE Alu -32 280 1 449 318 81 67 chrX 42383123 42383161 -134590979 - L2 LINE L2 -237 3035 2986 335 382 19 19 chrX 42383269 42383481 -134590659 - L2 LINE L2 -411 2903 2692 23308 25 33 0 chrX 42383644 42387377 -134586763 - L1PA4 LINE L1 -3 6152 2292 858 212 9 4 chrX 42387481 42387707 -134586433 - L1 LINE L1 -3570 2576 2350 4241 133 10 28 chrX 42387714 42388492 -134585648 - L1PA8A LINE L1 -4 6144 5395 2916 147 4 7 chrX 42388499 42389042 -134585098 - L1PA8A LINE L1 -3766 2380 1840 * 6672 34 0 0 chrX 42389036 42389866 -134584274 - L1P LINE L1 -1888 4258 3429 200 338 0 0 chrX 42390069 42390149 -134583991 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 1481 164 118 12 chrX 42390899 42391229 -134582911 - MLT1A1 LTR MaLR 0 365 1 669 340 20 73 chrX 42392606 42393015 -134581125 - L2 LINE L2 -61 3211 2825 3957 67 0 10 chrX 42393515 42394035 -134580105 - L1PA7 LINE L1 -3 6151 5637 1453 190 14 3 chrX 42394434 42394718 -134579422 + AluJb SINE Alu 1 287 -25 22854 51 5 0 chrX 42395094 42398070 -134576070 - L1P LINE L1 -3153 2993 4 3316 81 11 0 chrX 42398225 42398670 -134575470 + L1PA10 LINE L1 5718 6167 -1 456 267 89 22 chrX 42398673 42398853 -134575287 - L1ME3A LINE L1 -12 6158 5967 2110 115 16 10 chrX 42399063 42399367 -134574773 + AluSc SINE Alu 1 306 -3 2059 122 4 0 chrX 42400206 42400485 -134573655 + AluSx SINE Alu 1 280 -32 781 308 170 45 chrX 42400725 42401384 -134572756 - L2 LINE L2 -564 2750 2010 272 185 74 86 chrX 42401580 42401661 -134572479 - MER91C DNA MER1_type -30 110 31 2128 145 27 14 chrX 42402568 42402934 -134571206 + THE1C LTR MaLR 1 371 -4 9881 107 45 26 chrX 42402940 42404429 -134569711 + THE1C-int LTR MaLR 4 1525 -55 1954 138 47 0 chrX 42404429 42404727 -134569413 + AluSx SINE Alu 1 312 0 9881 107 45 26 chrX 42404727 42404785 -134569355 + THE1C-int LTR MaLR 1525 1580 0 1079 144 16 21 chrX 42404786 42404974 -134569166 + THE1C LTR MaLR 2 188 -187 1097 120 27 154 chrX 42404988 42405240 -134568900 + THE1C LTR MaLR 115 326 -49 2009 50 92 8 chrX 42405240 42405523 -134568617 - AluY SINE Alu 0 305 1 1097 120 27 154 chrX 42405523 42405568 -134568572 + THE1C LTR MaLR 326 375 0 204 250 76 76 chrX 42406688 42406780 -134567360 + MIR SINE MIR 58 149 -113 4939 54 76 1 chrX 42407070 42407742 -134566398 - LTR30 LTR ERV1 0 722 1 180 0 0 0 chrX 42408061 42408081 -134566059 + (TTA)n Simple_repeat Simple_repeat 2 21 0 207 0 0 0 chrX 42408616 42408639 -134565501 + (TG)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chrX 42409907 42409930 -134564210 + (TAAAAA)n Simple_repeat Simple_repeat 3 25 0 518 256 96 19 chrX 42410469 42410625 -134563515 - MIR SINE MIR -67 195 28 180 179 0 0 chrX 42410795 42410834 -134563306 + (CATA)n Simple_repeat Simple_repeat 4 42 0 207 0 0 0 chrX 42411662 42411685 -134562455 + (T)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chrX 42411844 42411870 -134562270 + AT_rich Low_complexity Low_complexity 1 26 0 340 261 61 17 chrX 42411954 42412069 -134562071 + L1ME LINE L1 5705 5824 -297 346 140 58 3 chrX 42412090 42412186 -134561954 + MER4B-int LTR ERV1 1280 1769 -4989 26 0 0 0 chrX 42412318 42412344 -134561796 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chrX 42412484 42412505 -134561635 + (T)n Simple_repeat Simple_repeat 1 21 0 272 232 54 36 chrX 42412777 42412889 -134561251 + L1ME LINE L1 5711 5824 -297 270 148 123 12 chrX 42412910 42412991 -134561149 + LTR57-int LTR ERVL 1317 1406 -3937 * 7486 136 56 49 chrX 42412928 42415081 -134559059 + MER4-int LTR ERV1 1687 4931 -1667 2244 151 3 6 chrX 42415081 42415419 -134558721 - MER1B DNA MER1_type 0 337 1 7486 136 56 49 chrX 42415419 42415495 -134558645 + MER4-int LTR ERV1 4931 5005 -1593 1889 149 46 0 chrX 42415595 42415923 -134558217 + MER41C LTR ERV1 212 554 0 696 158 0 86 chrX 42415923 42416073 -134558067 - MSTA LTR MaLR -126 302 166 323 275 54 12 chrX 42416073 42416240 -134557900 - L1M4 LINE L1 -3739 2407 2234 1750 104 6 79 chrX 42416917 42417235 -134556905 + THE1B LTR MaLR 70 364 0 290 167 17 0 chrX 42417350 42417410 -134556730 + CT-rich Low_complexity Low_complexity 3 63 0 4125 127 66 14 chrX 42417477 42418145 -134555995 - L1PA12 LINE L1 0 6168 5466 1169 251 47 0 chrX 42418224 42418543 -134555597 - L1MCc LINE L1 -6073 350 17 452 281 91 25 chrX 42418612 42418811 -134555329 + MER58C DNA MER1_type 1 212 -3 1452 176 103 86 chrX 42419015 42419552 -134554588 + MER66A LTR ERV1 97 478 0 208 50 0 50 chrX 42420794 42420834 -134553306 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2216 106 0 0 chrX 42420841 42421125 -134553015 + AluSg SINE Alu 3 286 -24 1506 229 61 24 chrX 42421379 42421843 -134552297 + MER110A LTR ERV1 19 479 -2 1241 166 12 20 chrX 42422144 42422391 -134551749 + AluJo SINE Alu 45 289 -23 189 0 0 0 chrX 42422520 42422541 -134551599 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1954 141 3 3 chrX 42422733 42423032 -134551108 - AluSx SINE Alu -12 300 2 658 310 27 54 chrX 42425710 42426078 -134548062 + L2 LINE L2 2806 3163 -150 2506 30 0 33 chrX 42426695 42426995 -134547145 - AluY SINE Alu -12 299 10 347 319 58 19 chrX 42427044 42427251 -134546889 - MIR SINE MIR -4 258 44 2173 205 188 12 chrX 42427495 42428081 -134546059 + L1MD2 LINE L1 5657 6345 -14 2195 102 20 3 chrX 42429352 42429655 -134544485 + AluSc SINE Alu 1 308 -1 451 262 150 11 chrX 42430187 42430374 -134543766 - MIR SINE MIR -1 261 49 318 238 0 0 chrX 42430801 42430864 -134543276 + L1MA4 LINE L1 1241 1303 -5262 * 3770 195 14 39 chrX 42430861 42431939 -134542201 + L1MA4 LINE L1 3239 4300 -3265 7861 39 0 0 chrX 42431963 42432983 -134541157 - L1PA5 LINE L1 -5 6149 5130 2889 50 0 0 chrX 42432983 42433340 -134540800 + L1P LINE L1 4629 4985 -1161 1038 172 15 0 chrX 42433371 42433574 -134540566 + L1MA4 LINE L1 4377 4582 -2983 775 177 38 0 chrX 42433549 42433707 -134540433 + L1MA4 LINE L1 5884 6047 -1518 * 1866 149 58 9 chrX 42433703 42434045 -134540095 + L1MA4 LINE L1 7081 7439 -280 360 163 35 12 chrX 42434055 42434141 -134539999 + L1MB4 LINE L1 6093 6180 0 359 149 59 41 chrX 42434675 42434777 -134539363 + L1MA8 LINE L1 5573 5661 -639 1612 115 56 28 chrX 42435417 42435705 -134538435 + L1MA8 LINE L1 5778 6073 -218 1189 71 0 0 chrX 42435706 42435860 -134538280 + MER41A LTR ERV1 401 554 0 5545 137 53 15 chrX 42435862 42436917 -134537223 + MER41A-int LTR ERV1 1 1091 -4855 222 37 0 0 chrX 42436917 42436944 -134537196 + (TG)n Simple_repeat Simple_repeat 2 28 0 1345 100 61 64 chrX 42436944 42437211 -134536929 + MER41A-int LTR ERV1 1359 3715 -4101 * 3504 237 51 5 chrX 42437206 42437792 -134536348 + MER41A-int LTR ERV1 5331 5943 -3 3611 86 0 2 chrX 42437793 42438261 -134535879 + MER41A LTR ERV1 1 467 -87 969 122 44 17 chrX 42438264 42438444 -134535696 + L1MA8 LINE L1 6059 6243 -48 2949 186 38 36 chrX 42438488 42439064 -134535076 + LTR22 LTR ERVK 1 577 -3 683 132 0 0 chrX 42439099 42439190 -134534950 + FLAM_A SINE Alu 36 126 -16 23 0 0 0 chrX 42439231 42439254 -134534886 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 42439367 42439388 -134534752 + AT_rich Low_complexity Low_complexity 1 21 0 849 226 43 24 chrX 42439969 42440177 -134533963 + MIR SINE MIR 22 233 -29 1123 125 0 0 chrX 42441407 42441567 -134532573 + AluSg/x SINE Alu 121 280 -32 403 136 49 0 chrX 42441872 42441953 -134532187 - MIR SINE MIR -81 181 97 783 233 92 29 chrX 42442958 42443268 -134530872 + LTR30 LTR ERV1 105 399 -94 279 203 0 0 chrX 42443954 42444013 -134530127 + (CTA)n Simple_repeat Simple_repeat 1 59 0 396 304 13 25 chrX 42444101 42444259 -134529881 - MIR SINE MIR -106 156 1 820 242 146 55 chrX 42444510 42445059 -134529081 - MLT1F1 LTR MaLR 0 595 1 1924 155 3 0 chrX 42445186 42445476 -134528664 + AluJb SINE Alu 3 293 -19 341 277 36 15 chrX 42445479 42445636 -134528504 + L1MC/D LINE L1 5645 5802 -319 6008 126 28 45 chrX 42445986 42446708 -134527432 + MER4A-int LTR ERV1 5510 6208 -390 2862 7 0 0 chrX 42446708 42447014 -134527126 - AluYa5 SINE Alu -5 306 1 6008 126 28 45 chrX 42447014 42447395 -134526745 + MER4A-int LTR ERV1 6208 6594 -4 4862 91 7 46 chrX 42447404 42448095 -134526045 + MER4A LTR ERV1 1 664 0 25 0 0 0 chrX 42448111 42448136 -134526004 + AT_rich Low_complexity Low_complexity 1 25 0 2480 63 0 28 chrX 42448165 42448484 -134525656 - AluY SINE Alu -1 310 1 804 178 0 0 chrX 42448944 42449073 -134525067 - FRAM SINE Alu -10 166 38 277 211 28 28 chrX 42450308 42450379 -134523761 + L2 LINE L2 3236 3306 -7 2379 82 0 31 chrX 42450756 42451075 -134523065 - AluSg SINE Alu -1 309 1 2004 105 10 7 chrX 42452073 42452367 -134521773 + AluSx SINE Alu 1 295 -17 2125 104 34 6 chrX 42453191 42453518 -134520622 + L1MA4 LINE L1 5965 6300 0 370 209 27 55 chrX 42455002 42455112 -134519028 - L2 LINE L2 -5 3308 3202 231 280 130 42 chrX 42456409 42456648 -134517492 + L2 LINE L2 763 1022 -2292 364 295 153 28 chrX 42456735 42457023 -134517117 + L2 LINE L2 1323 1646 -1668 1989 148 80 16 chrX 42457289 42457666 -134516474 + MER31A LTR ERV1 85 485 0 268 292 83 8 chrX 42457666 42457786 -134516354 + L2 LINE L2 1545 1673 -1641 837 82 16 16 chrX 42458272 42458392 -134515748 - MSTB LTR MaLR 0 426 307 778 123 174 58 chrX 42458392 42458547 -134515593 + MER41C LTR ERV1 1 173 -381 381 256 30 45 chrX 42459535 42459668 -134514472 + L2 LINE L2 3183 3313 0 189 200 0 100 chrX 42459671 42459697 -134514443 + L2 LINE L2 3142 3162 -110 5536 110 22 12 chrX 42459697 42460000 -134514140 - LTR19C LTR ERV1 0 779 481 183 42 0 0 chrX 42460000 42460024 -134514116 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5536 110 22 12 chrX 42460024 42460491 -134513649 - LTR19C LTR ERV1 -298 481 1 189 200 0 100 chrX 42460491 42460514 -134513626 + L2 LINE L2 3162 3186 -86 870 193 91 58 chrX 42461018 42461254 -134512886 - MER90 LTR ERV1 -6 608 365 5587 149 39 18 chrX 42461254 42462063 -134512077 - MER49 LTR ERV1 0 923 175 1481 226 85 87 chrX 42462063 42462675 -134511465 + LTR36 LTR ERV1 1 611 0 5587 149 39 18 chrX 42462675 42462853 -134511287 - MER49 LTR ERV1 -748 175 2 3687 155 56 26 chrX 42462854 42463533 -134510607 - MER50 LTR ERV1 -23 711 13 574 287 5 36 chrX 42463646 42463841 -134510299 - MER110-int LTR ERV1 -1851 2796 2608 24 0 0 0 chrX 42465334 42465358 -134508782 + AT_rich Low_complexity Low_complexity 1 24 0 200 175 33 25 chrX 42465473 42465593 -134508547 + (TA)n Simple_repeat Simple_repeat 1 121 0 667 289 77 34 chrX 42465656 42465954 -134508186 - Charlie2 DNA MER1_type -2441 341 31 206 214 112 11 chrX 42467024 42467113 -134507027 + MIR SINE MIR 109 206 -56 454 333 12 39 chrX 42467182 42467440 -134506700 + MIR SINE MIR 11 261 -1 1696 133 3 40 chrX 42467762 42468062 -134506078 - L1MA9 LINE L1 -370 5942 5654 1813 176 36 3 chrX 42468062 42468397 -134505743 + L1MA9 LINE L1 5965 6311 -1 22 0 0 0 chrX 42468442 42468464 -134505676 + AT_rich Low_complexity Low_complexity 1 22 0 1807 174 8 65 chrX 42470026 42470504 -134503636 + L1MA7 LINE L1 5757 6207 -84 387 113 0 0 chrX 42470916 42470978 -134503162 + (CA)n Simple_repeat Simple_repeat 1 62 0 191 107 36 89 chrX 42472642 42472698 -134501442 + MER5C DNA MER1_type 267 319 -5 322 231 0 33 chrX 42475389 42475480 -134498660 - MIR SINE MIR -48 214 127 1651 182 5 57 chrX 42475828 42476197 -134497943 - MLT1B LTR MaLR 0 390 41 5286 156 23 22 chrX 42476232 42477532 -134496608 - L1MA7 LINE L1 -4 6287 4984 25 31 0 0 chrX 42477738 42477770 -134496370 + AT_rich Low_complexity Low_complexity 1 32 0 1118 176 5 15 chrX 42477977 42478182 -134495958 - L1PA15 LINE L1 0 6165 5963 15221 144 24 10 chrX 42478195 42482822 -134491318 - L1MA3 LINE L1 0 7724 3019 2342 121 0 0 chrX 42482822 42483135 -134491005 - AluSq SINE Alu 0 313 1 15221 144 24 10 chrX 42483135 42483781 -134490359 - L1MA3 LINE L1 -4705 3019 2383 29332 99 15 22 chrX 42483805 42490260 -134483880 - L1PA7 LINE L1 -4 6465 6 1942 212 13 2 chrX 42490275 42490737 -134483403 - L1P LINE L1 -1490 4656 4190 503 346 71 18 chrX 42490777 42491282 -134482858 + L1M4 LINE L1 4388 4919 -1227 239 299 127 13 chrX 42493342 42493499 -134480641 + MIR3 SINE MIR 33 207 -1 2459 64 0 0 chrX 42493698 42493994 -134480146 - AluY SINE Alu -15 296 1 1061 201 43 74 chrX 42502373 42502672 -134471468 + AluJo SINE Alu 1 290 -12 930 182 131 28 chrX 42502729 42502815 -134471325 + MER21B LTR ERV1 1 77 -786 2027 104 0 0 chrX 42502815 42503074 -134471066 - AluSc SINE Alu -14 295 37 930 182 131 28 chrX 42503074 42503201 -134470939 + MER21B LTR ERV1 77 236 -627 925 218 46 18 chrX 42503214 42503498 -134470642 - HERVL68 LTR ERVL -910 2127 1836 659 291 54 52 chrX 42503521 42503749 -134470391 - HERVL68 LTR ERVL -2281 756 530 1561 185 7 7 chrX 42503749 42504036 -134470104 - AluJo SINE Alu -25 287 1 659 291 54 52 chrX 42504036 42504469 -134469671 - HERVL68 LTR ERVL -2507 530 9 272 119 0 0 chrX 42504521 42504563 -134469577 - MER77 LTR ERV1 0 605 564 470 279 155 9 chrX 42504595 42504821 -134469319 + L2 LINE L2 1525 1783 -1531 279 273 61 0 chrX 42504848 42504947 -134469193 + L1M4 LINE L1 4639 4743 -1403 35 41 0 0 chrX 42504947 42504996 -134469144 + AT_rich Low_complexity Low_complexity 1 49 0 396 206 144 7 chrX 42505024 42505170 -134468970 + L1M4 LINE L1 4751 4916 -1230 248 361 47 26 chrX 42505364 42505555 -134468585 + L2 LINE L2 3078 3272 0 563 336 52 11 chrX 42505670 42505956 -134468184 + REP3 LTR ERV 3 300 -262 251 300 48 14 chrX 42506357 42506567 -134467573 + MER113 DNA MER1_type? 11 227 -294 297 367 41 6 chrX 42506639 42506808 -134467332 - MIR SINE MIR -62 200 26 1410 155 43 19 chrX 42506967 42507225 -134466915 - MER21B LTR ERV1 -422 441 178 3848 217 6 26 chrX 42507286 42508115 -134466025 - L1 LINE L1 -3007 3841 3040 2213 103 7 10 chrX 42508115 42508415 -134465725 + AluSq SINE Alu 1 299 -14 3848 217 6 26 chrX 42508415 42508679 -134465461 - L1 LINE L1 -3808 3040 2772 3077 170 35 13 chrX 42508660 42509341 -134464799 - L1PBa LINE L1 -4118 2745 2050 * 382 123 386 9 chrX 42509693 42509807 -134464333 - MER4C LTR ERV1 -18 447 291 1430 148 55 49 chrX 42509935 42510279 -134463861 - MER4A LTR ERV1 -318 346 1 15571 99 54 22 chrX 42510295 42512451 -134461689 - MER4A-int LTR ERV1 -4 6594 4335 2440 76 3 0 chrX 42512451 42512752 -134461388 + AluY SINE Alu 1 302 -9 15571 99 54 22 chrX 42512752 42513268 -134460872 - MER4A-int LTR ERV1 -2263 4335 3837 416 152 18 30 chrX 42513261 42513422 -134460718 - MER4A-int LTR ERV1 -2911 3687 3438 * 971 80 0 16 chrX 42513424 42513549 -134460591 + AluSq/x SINE Alu 13 135 -177 2044 133 0 10 chrX 42513549 42513843 -134460297 + AluSx SINE Alu 1 291 -21 2972 127 90 8 chrX 42513843 42514496 -134459644 - MER4A-int LTR ERV1 -3154 3444 2738 1145 129 147 4 chrX 42514497 42514722 -134459418 + LTR8 LTR ERV1 1 257 -434 1151 102 10 0 chrX 42514722 42514919 -134459221 - MER4A-int LTR ERV1 -4103 2495 2297 * 3376 127 15 54 chrX 42514918 42515602 -134458538 - MER4A-int LTR ERV1 -3762 1253 597 6086 40 0 0 chrX 42515608 42516337 -134457803 - L1PA3 LINE L1 -3 6152 5424 211 259 19 0 chrX 42516346 42516400 -134457740 - L2 LINE L2 -518 2796 2742 25 0 0 0 chrX 42516415 42516440 -134457700 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrX 42516740 42516768 -134457372 + AT_rich Low_complexity Low_complexity 1 28 0 255 224 0 0 chrX 42516886 42516935 -134457205 - L1MD2 LINE L1 -88 6271 6223 4757 130 124 52 chrX 42517060 42518167 -134455973 - MER4A-int LTR ERV1 -5411 1187 1 1906 143 5 41 chrX 42518169 42518523 -134455617 - MER4A LTR ERV1 0 664 261 600 96 53 11 chrX 42518523 42518617 -134455523 - MER4A LTR ERV1 -566 98 1 1126 98 0 0 chrX 42518617 42518760 -134455380 + MER4B LTR ERV1 468 610 0 1160 194 90 11 chrX 42518760 42519038 -134455102 - MER4A-int LTR ERV1 -118 6213 5914 618 202 32 3 chrX 42519033 42519197 -134454943 - LTR49-int LTR ERV1 -406 5790 4351 * 4226 129 16 49 chrX 42519274 42519966 -134454174 - LTR8 LTR ERV1 -22 669 1 4102 146 80 8 chrX 42519972 42520726 -134453414 - LTR49-int LTR ERV1 -682 5649 4842 213 228 0 53 chrX 42522120 42522177 -134451963 + (CATA)n Simple_repeat Simple_repeat 2 55 0 741 206 82 24 chrX 42522202 42522372 -134451768 + MLT2B1 LTR ERVL 298 477 -43 279 0 0 0 chrX 42522374 42522405 -134451735 + (CA)n Simple_repeat Simple_repeat 2 32 0 1688 256 50 20 chrX 42522405 42522967 -134451173 + L1M4 LINE L1 4070 4648 -1498 982 109 0 13 chrX 42523046 42523202 -134450938 + MER41B LTR ERV1 482 635 0 267 122 365 14 chrX 42523204 42523278 -134450862 + MER41B-int LTR ERV1 3 102 -5844 4423 132 33 16 chrX 42523287 42524002 -134450138 + MER41B-int LTR ERV1 1 637 -5309 841 119 16 0 chrX 42524003 42524129 -134450011 - AluSc SINE Alu -5 304 177 964 64 0 16 chrX 42524234 42524359 -134449781 - AluSc SINE Alu -186 123 1 4264 157 101 19 chrX 42524359 42525424 -134448716 + MER41B-int LTR ERV1 630 1974 -3972 309 98 59 0 chrX 42525441 42525492 -134448648 + MER41B-int LTR ERV1 2167 2220 -3726 * 1559 114 8 17 chrX 42525488 42525725 -134448415 + MER41B-int LTR ERV1 3355 3589 -3948 10859 87 1 1 chrX 42525727 42527159 -134446981 + L1P LINE L1 2 1433 -4713 14343 38 19 2 chrX 42527159 42529562 -134444578 + L1PA4 LINE L1 3720 6149 -6 2522 163 57 10 chrX 42529562 42530052 -134444088 + MER41B-int LTR ERV1 3697 4209 -3607 897 159 0 0 chrX 42530053 42530185 -134443955 - AluSp/q SINE Alu -21 292 161 1702 117 0 0 chrX 42530187 42530417 -134443723 - AluSq SINE Alu -82 231 2 2189 110 29 29 chrX 42530432 42530808 -134443332 + MER41-int LTR ERV1 1727 3461 -2485 1017 291 40 2 chrX 42530908 42531306 -134442834 - L1M4 LINE L1 -1846 4300 3888 2355 60 39 0 chrX 42531307 42531592 -134442548 - AluSg SINE Alu -14 296 1 313 299 43 48 chrX 42531592 42531779 -134442361 - HAL1 LINE L1 -1206 1301 1116 1864 195 25 25 chrX 42533110 42533510 -134440630 - L1P LINE L1 -1103 5043 4644 22191 98 11 2 chrX 42533520 42537595 -134436545 - L1PA8 LINE L1 0 6172 2061 15223 43 5 1 chrX 42537606 42540149 -134433991 - L1PA5 LINE L1 0 6154 3605 225 80 40 20 chrX 42541538 42541588 -134432552 + (TA)n Simple_repeat Simple_repeat 2 52 0 338 80 13 40 chrX 42541637 42541712 -134432428 + (TA)n Simple_repeat Simple_repeat 2 74 0 203 250 71 0 chrX 42541750 42541806 -134432334 - MIR SINE MIR -118 144 85 23 33 0 0 chrX 42542562 42542592 -134431548 + AT_rich Low_complexity Low_complexity 1 30 0 284 146 0 0 chrX 42542760 42542801 -134431339 + 5S rRNA rRNA 2 42 -79 496 254 60 19 chrX 42542893 42543210 -134430930 - L1MC4 LINE L1 0 8042 7620 585 242 0 0 chrX 42543310 42543438 -134430702 - L1MC4 LINE L1 -402 7640 7513 246 261 183 35 chrX 42543458 42543573 -134430567 - L2 LINE L2 -5 3267 3136 193 326 79 0 chrX 42544357 42544446 -134429694 + MIR SINE MIR 50 145 -63 300 309 73 7 chrX 42544684 42544820 -134429320 + L1M4 LINE L1 2990 3134 -3012 180 176 0 0 chrX 42545245 42545279 -134428861 + CT-rich Low_complexity Low_complexity 4 37 0 26595 73 3 0 chrX 42546069 42549481 -134424659 - L1P LINE L1 -2722 3424 3 10668 149 30 40 chrX 42549482 42551828 -134422312 - L1P3 LINE L1 -4071 2390 24 1968 113 3 3 chrX 42551842 42552135 -134422005 - L1PA15-16 LINE L1 -4145 2704 2412 6195 165 16 12 chrX 42552268 42553305 -134420835 - L1PA15-16 LINE L1 -4893 1956 916 319 305 21 43 chrX 42553449 42553590 -134420550 + MER5A DNA MER1_type 7 144 -45 203 355 43 14 chrX 42553630 42553768 -134420372 + L2 LINE L2 2907 3048 -224 709 271 33 41 chrX 42554202 42554446 -134419694 - MIR SINE MIR -18 244 3 324 301 173 0 chrX 42555428 42555561 -134418579 - MIR SINE MIR -2 260 105 264 100 0 0 chrX 42555745 42555785 -134418355 + (TC)n Simple_repeat Simple_repeat 1 40 0 187 314 289 0 chrX 42557341 42557462 -134416678 + MIR3 SINE MIR 47 202 -6 180 277 231 0 chrX 42557648 42557778 -134416362 + MIR SINE MIR 31 190 -72 232 191 43 0 chrX 42557808 42557855 -134416285 - MLT2D LTR ERVL 0 414 366 610 217 0 0 chrX 42559018 42559124 -134415016 + MLT1E LTR MaLR 1 106 -487 10205 171 16 7 chrX 42559136 42562226 -134411914 - L1PB1 LINE L1 -2 7109 4177 4307 195 26 13 chrX 42562226 42563280 -134410860 - L1MD1 LINE L1 -163 6473 5400 * 28342 50 3 1 chrX 42563254 42567541 -134406599 - L1PA5 LINE L1 -1 6547 2253 620 155 10 0 chrX 42567539 42567636 -134406504 + L1P LINE L1 553 650 -5496 * 558 146 0 0 chrX 42567679 42567761 -134406379 - AluSg/x SINE Alu -16 294 213 2077 256 53 5 chrX 42567761 42568397 -134405743 - L1MD1 LINE L1 -1444 5096 4430 3093 209 74 62 chrX 42568409 42569521 -134404619 - L1PB1 LINE L1 -5904 1126 2 3662 250 47 14 chrX 42569538 42570764 -134403376 - L1MD1 LINE L1 -2629 3911 2646 7045 212 90 27 chrX 42570865 42572983 -134401157 - L1MD1 LINE L1 -4171 2369 18 1410 266 110 20 chrX 42572984 42573438 -134400702 + MLT1E LTR MaLR 99 593 0 378 337 89 36 chrX 42574387 42574950 -134399190 + L2 LINE L2 2589 3180 -92 559 291 46 30 chrX 42575312 42575529 -134398611 - MIR SINE MIR -6 256 37 214 281 23 47 chrX 42575634 42575762 -134398378 + L2 LINE L2 2862 2986 -286 214 299 52 13 chrX 42575874 42575951 -134398189 - MIR SINE MIR -131 131 52 1827 224 122 28 chrX 42576045 42576514 -134397626 + MLT2B2 LTR ERVL 1 513 -2 257 319 35 26 chrX 42576516 42576629 -134397511 - MER117 DNA MER1_type -75 122 9 463 236 209 7 chrX 42577097 42577245 -134396895 - MER5A DNA MER1_type 0 189 12 229 260 57 57 chrX 42577514 42577637 -134396503 - MIR SINE MIR -138 124 2 288 303 167 25 chrX 42577825 42577987 -134396153 - MIR SINE MIR -47 215 31 211 256 35 47 chrX 42578296 42578382 -134395758 - L2 LINE L2 0 3272 3188 340 319 25 44 chrX 42579633 42579793 -134394347 - MIR3 SINE MIR -35 173 17 276 234 52 13 chrX 42580991 42581068 -134393072 + MIR SINE MIR 66 145 -117 2486 87 7 0 chrX 42581086 42581426 -134392714 + AluSx SINE Alu 1 342 0 325 275 83 17 chrX 42581715 42581835 -134392305 - L2 LINE L2 -9 3263 3136 193 245 53 43 chrX 42581874 42581968 -134392172 - L2 LINE L2 -677 2637 2543 189 272 123 12 chrX 42581989 42582070 -134392070 + L2 LINE L2 3188 3277 -36 380 294 17 4 chrX 42582346 42582469 -134391671 + MIR SINE MIR 15 141 -67 2470 93 0 0 chrX 42583303 42583614 -134390526 - AluSq SINE Alu -2 311 1 1355 174 19 0 chrX 42584129 42584399 -134389741 - L1MA7 LINE L1 0 6291 6017 1243 274 102 42 chrX 42584694 42585153 -134388987 + MLT1G1 LTR MaLR 66 559 -36 3632 83 2 13 chrX 42585153 42585610 -134388530 + MLT2A2 LTR ERVL 1 452 -1 1243 274 102 42 chrX 42585610 42585650 -134388490 + MLT1G1 LTR MaLR 559 595 0 299 278 21 21 chrX 42586204 42586301 -134387839 + LTR67 LTR ERVL 457 553 -4 245 287 130 27 chrX 42586826 42587049 -134387091 + L1PBb LINE L1 1 246 -6603 2676 107 136 7 chrX 42587176 42587587 -134386553 - MER4C LTR ERV1 -1 464 1 813 264 25 51 chrX 42588544 42588925 -134385215 + L1PBb LINE L1 1418 1863 -4975 8525 159 17 25 chrX 42588938 42590450 -134383690 + L1P LINE L1 11 1511 -4635 19478 43 1 0 chrX 42590450 42593484 -134380656 + L1PA4 LINE L1 3110 6153 -2 7854 235 57 17 chrX 42593484 42594239 -134379901 - L1MA7 LINE L1 -180 6315 5592 2393 97 0 0 chrX 42594239 42594548 -134379592 + AluY SINE Alu 1 309 -2 7854 235 57 17 chrX 42594548 42597131 -134377009 - L1MA7 LINE L1 -903 5592 2745 678 320 30 79 chrX 42597130 42597624 -134376516 - L1MA7 LINE L1 -5187 1094 625 * 2886 262 13 19 chrX 42597641 42598343 -134375797 - L1MA7 LINE L1 -5580 701 4 12929 133 34 33 chrX 42599162 42600028 -134374112 - HUERS-P1 LTR ERV1 -1328 3552 2689 2073 125 14 0 chrX 42600028 42600325 -134373815 + AluJo SINE Alu 5 305 -7 12929 133 34 33 chrX 42600325 42602118 -134372022 - HUERS-P1 LTR ERV1 -2191 2689 766 3714 152 119 41 chrX 42602115 42602588 -134371552 - HUERS-P1 LTR ERV1 -5042 1221 1022 * 351 0 0 0 chrX 42602588 42602627 -134371513 + (GA)n Simple_repeat Simple_repeat 2 40 0 3714 152 119 41 chrX 42602627 42603352 -134370788 - HUERS-P1 LTR ERV1 -5241 1022 355 483 288 73 40 chrX 42603448 42603625 -134370515 - HUERS-P1 LTR ERV1 -6044 219 37 758 186 7 21 chrX 42603649 42603794 -134370346 - LTR8A LTR ERV1 0 727 585 1804 130 0 11 chrX 42603804 42604074 -134370066 - L1PA16 LINE L1 -9 6157 5891 4696 170 39 20 chrX 42604780 42605428 -134368712 - L1MC2 LINE L1 -11 6333 5662 2119 116 3 23 chrX 42605428 42605591 -134368549 - AluSx SINE Alu -16 296 140 2216 97 0 3 chrX 42605591 42605880 -134368260 - AluSc SINE Alu -17 292 5 2119 116 3 23 chrX 42605880 42606018 -134368122 - AluSx SINE Alu -172 140 1 4696 170 39 20 chrX 42606018 42606273 -134367867 - L1MC2 LINE L1 -682 5662 5413 3344 117 59 117 chrX 42606283 42606956 -134367184 + MER51A LTR ERV1 1 634 0 1443 167 10 5 chrX 42606958 42607372 -134366768 - L1MC2 LINE L1 -743 5403 5080 2327 85 3 0 chrX 42607373 42607666 -134366474 + AluSg SINE Alu 1 294 -16 308 289 0 22 chrX 42607666 42607756 -134366384 - L1MC4 LINE L1 -1342 6700 6613 217 141 0 31 chrX 42607760 42607824 -134366316 + (TA)n Simple_repeat Simple_repeat 2 63 0 554 235 47 7 chrX 42607828 42607977 -134366163 - L1MC2 LINE L1 -1065 5081 4927 930 156 40 0 chrX 42608635 42608808 -134365332 - L1MA8 LINE L1 0 6291 6112 249 102 0 23 chrX 42608809 42608858 -134365282 - L1MA5A LINE L1 -227 6068 6017 7378 122 19 0 chrX 42609683 42611218 -134362922 - L1MA1 LINE L1 0 6302 4739 3735 224 25 11 chrX 42611249 42612204 -134361936 - L1MA1 LINE L1 -2828 3318 2350 5767 127 19 19 chrX 42612207 42613061 -134361079 - L1PA13 LINE L1 -1 6162 5309 1950 156 0 0 chrX 42613061 42613363 -134360777 - AluSx SINE Alu -9 303 2 5767 127 19 19 chrX 42613363 42614481 -134359659 - L1PA13 LINE L1 -853 5310 4189 239 330 74 18 chrX 42614529 42614923 -134359217 + L1M4 LINE L1 4399 4814 -1332 2312 107 0 0 chrX 42615071 42615381 -134358759 - AluY SINE Alu -1 310 1 263 309 120 14 chrX 42616584 42616744 -134357396 - L1M4 LINE L1 -6298 244 54 216 0 0 0 chrX 42616744 42616768 -134357372 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 263 309 120 14 chrX 42616768 42616824 -134357316 - L1M4 LINE L1 -6488 54 5 186 368 184 24 chrX 42616850 42617062 -134357078 - L2 LINE L2 -9 3263 3018 518 205 0 0 chrX 42617506 42617589 -134356551 + AluJ/FLAM SINE Alu 2 84 -228 682 189 119 0 chrX 42617637 42617796 -134356344 + L1MA8 LINE L1 6114 6291 0 23 54 0 0 chrX 42618202 42618239 -134355901 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrX 42618552 42618573 -134355567 + AT_rich Low_complexity Low_complexity 1 21 0 8459 23 12 2 chrX 42618690 42619775 -134354365 - L1P LINE L1 -3045 3101 2006 5927 37 1 0 chrX 42619777 42620482 -134353658 + L1PA3 LINE L1 5449 6154 -1 207 0 0 0 chrX 42620485 42620508 -134353632 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1794 126 7 0 chrX 42620515 42620808 -134353332 - L1P LINE L1 -4288 1858 1564 1554 129 14 37 chrX 42620808 42621103 -134353037 - L1P4 LINE L1 -569 5599 5312 1650 176 3 3 chrX 42621109 42621415 -134352725 - AluSx SINE Alu 0 306 1 740 179 8 8 chrX 42621415 42621549 -134352591 - AluSq/x SINE Alu -177 135 2 4512 197 10 33 chrX 42621567 42622714 -134351426 - L1P4 LINE L1 -837 5309 4190 535 337 68 19 chrX 42622754 42623167 -134350973 + L1M4 LINE L1 4388 4820 -1326 22 0 0 0 chrX 42624861 42624883 -134349257 + AT_rich Low_complexity Low_complexity 1 22 0 523 85 32 0 chrX 42625007 42625101 -134349039 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 312 314 135 24 chrX 42625449 42625656 -134348484 - L1M4 LINE L1 -6298 244 15 229 383 168 19 chrX 42625687 42625901 -134348239 - L2 LINE L2 -9 3263 3018 504 179 0 0 chrX 42626345 42626429 -134347711 + AluJ/FLAM SINE Alu 1 84 -228 646 168 90 30 chrX 42626478 42626645 -134347495 + L1MA8 LINE L1 6114 6290 -1 557 155 0 0 chrX 42627466 42627550 -134346590 + AluJ/FLAM SINE Alu 1 84 -228 646 168 90 30 chrX 42627599 42627766 -134346374 + L1MA8 LINE L1 6114 6290 -1 21 0 0 0 chrX 42628534 42628555 -134345585 + AT_rich Low_complexity Low_complexity 1 21 0 1185 227 60 41 chrX 42628845 42629306 -134344834 + LTR19C LTR ERV1 130 779 0 4091 199 25 23 chrX 42629306 42630048 -134344092 - L1 LINE L1 -2115 4031 3285 1637 169 11 4 chrX 42630048 42630320 -134343820 - AluSx SINE Alu -1 311 38 4091 199 25 23 chrX 42630320 42630637 -134343503 - L1 LINE L1 -2861 3285 2970 2355 157 34 0 chrX 42630819 42631226 -134342914 + MSTB LTR MaLR 6 426 0 9255 173 12 10 chrX 42631226 42632873 -134341267 + MSTB-int LTR MaLR 1 1651 0 2436 161 31 5 chrX 42632873 42633288 -134340852 + MSTB LTR MaLR 1 426 0 835 231 5 29 chrX 42633300 42633387 -134340753 - L1ME LINE L1 -488 5678 5590 1583 214 36 11 chrX 42633387 42633743 -134340397 + MLT1A1 LTR MaLR 1 365 0 835 231 5 29 chrX 42633743 42633863 -134340277 - L1ME LINE L1 -576 5590 5476 699 236 165 7 chrX 42633895 42634192 -134339948 - L1ME LINE L1 -2184 3962 3619 2025 180 32 34 chrX 42634193 42634739 -134339401 - MLT2A2 LTR ERVL -8 546 1 7816 183 20 11 chrX 42634873 42637580 -134336560 + L1PA16 LINE L1 3440 6165 -1 339 265 37 62 chrX 42637593 42637907 -134336233 - L1ME LINE L1 -2669 3477 3170 2396 50 0 0 chrX 42637907 42638205 -134335935 - L1PA8 LINE L1 0 6172 5875 7221 89 3 15 chrX 42638205 42639265 -134334875 - L1P3 LINE L1 -5407 1054 8 6576 153 16 18 chrX 42639272 42639454 -134334686 - L1M1 LINE L1 -521 5781 5600 2061 125 6 13 chrX 42639454 42639765 -134334375 - AluSg1 SINE Alu 0 309 1 6576 153 16 18 chrX 42639765 42641372 -134332768 - L1M1 LINE L1 -702 5600 4006 5455 109 27 3 chrX 42641388 42642453 -134331687 - L1PB2 LINE L1 -10 6141 5063 1032 174 46 0 chrX 42642462 42642680 -134331460 - L1 LINE L1 -743 5403 5176 1891 154 73 5 chrX 42642708 42643090 -134331050 + L1MA5A LINE L1 5884 6291 -6 6965 93 17 1 chrX 42643230 42644312 -134329828 + L1M1 LINE L1 1950 3048 -4517 1793 289 12 68 chrX 42644311 42645289 -134328851 + L1P3 LINE L1 2 924 -4951 * 18240 35 2 0 chrX 42645289 42648253 -134325887 + L1PA4 LINE L1 3188 6152 -3 14438 141 18 0 chrX 42648265 42651544 -134322596 + L1PA10 LINE L1 2827 6166 -2 7227 140 12 8 chrX 42651547 42653955 -134320185 + L1MA2 LINE L1 3890 6304 0 22 56 0 0 chrX 42653955 42653991 -134320149 + AT_rich Low_complexity Low_complexity 1 36 0 1129 200 3 28 chrX 42653991 42654281 -134319859 - L1 LINE L1 -1286 4860 4578 202 29 57 0 chrX 42654353 42654388 -134319752 + (TA)n Simple_repeat Simple_repeat 1 37 0 252 0 0 0 chrX 42654388 42654416 -134319724 + (T)n Simple_repeat Simple_repeat 1 28 0 8023 129 21 34 chrX 42654533 42656243 -134317897 - L1P3 LINE L1 -4314 2147 433 22 0 0 0 chrX 42656334 42656356 -134317784 + AT_rich Low_complexity Low_complexity 1 22 0 450 312 19 13 chrX 42656932 42657089 -134317051 - MIR SINE MIR -46 216 59 399 243 34 29 chrX 42657079 42657209 -134316931 + MIR SINE MIR 23 149 -63 * 335 303 6 62 chrX 42657884 42658046 -134316094 - L2 LINE L2 0 3313 3161 544 227 0 8 chrX 42658187 42658315 -134315825 - L1MDa LINE L1 -6219 425 299 186 103 0 0 chrX 42658594 42658623 -134315517 + (TG)n Simple_repeat Simple_repeat 2 30 0 257 169 17 0 chrX 42658635 42658694 -134315446 + (TA)n Simple_repeat Simple_repeat 1 60 0 216 0 0 0 chrX 42658760 42658784 -134315356 + (CA)n Simple_repeat Simple_repeat 2 25 0 351 0 0 0 chrX 42658899 42658938 -134315202 + (TC)n Simple_repeat Simple_repeat 2 40 0 435 149 0 0 chrX 42658938 42659012 -134315128 + (TA)n Simple_repeat Simple_repeat 2 75 0 265 250 114 30 chrX 42659342 42659474 -134314666 - L1MDa LINE L1 -6298 244 102 216 0 0 0 chrX 42659502 42659526 -134314614 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 235 372 167 17 chrX 42659604 42659784 -134314356 - L2 LINE L2 -9 3263 3057 526 155 0 0 chrX 42660266 42660350 -134313790 + AluJ/FLAM SINE Alu 1 84 -228 666 164 91 12 chrX 42660399 42660564 -134313576 + L1MA8 LINE L1 6114 6291 0 22 0 0 0 chrX 42661325 42661347 -134312793 + AT_rich Low_complexity Low_complexity 1 22 0 1199 242 53 45 chrX 42661601 42662095 -134312045 + LTR19C LTR ERV1 137 779 0 3636 197 10 33 chrX 42662099 42662856 -134311284 - L1 LINE L1 -2119 4027 3295 1528 180 8 0 chrX 42662856 42663111 -134311029 - AluSx SINE Alu -18 294 38 3636 197 10 33 chrX 42663111 42663289 -134310851 - L1 LINE L1 -2851 3295 3114 1696 217 27 29 chrX 42663391 42663912 -134310228 - L1 LINE L1 -3277 2869 2350 * 4756 127 5 34 chrX 42663908 42664785 -134309355 - L1PA13 LINE L1 -1 6162 5312 1106 164 6 0 chrX 42664790 42664973 -134309167 - AluSg/x SINE Alu -7 303 120 922 197 5 0 chrX 42664973 42665166 -134308974 - L1P LINE L1 -3777 2369 2176 2427 80 0 6 chrX 42665200 42665513 -134308627 - AluY SINE Alu 0 311 1 21 0 0 0 chrX 42665758 42665779 -134308361 + AT_rich Low_complexity Low_complexity 1 21 0 310 225 25 0 chrX 42665867 42665947 -134308193 - L1M4 LINE L1 -1664 4482 4401 1279 218 47 88 chrX 42666040 42666527 -134307613 + LTR19C LTR ERV1 313 779 0 6515 196 22 28 chrX 42666527 42667288 -134306852 - L1M4 LINE L1 -2115 4031 3267 1652 182 0 0 chrX 42667288 42667563 -134306577 - AluSx SINE Alu 0 312 38 6515 196 22 28 chrX 42667563 42668494 -134305646 - L1M4 LINE L1 -2879 3267 2350 2805 10 0 3 chrX 42668513 42668824 -134305316 - AluYa5 SINE Alu -1 310 1 5024 124 8 12 chrX 42668830 42669683 -134304457 - L1PA13 LINE L1 -2 6161 5312 2041 145 0 7 chrX 42669685 42669995 -134304145 - AluSx SINE Alu -4 308 1 207 114 0 0 chrX 42670002 42670037 -134304103 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 475 282 131 27 chrX 42670140 42670583 -134303557 - L1M4 LINE L1 -2063 4083 3595 213 314 77 5 chrX 42671518 42671661 -134302479 + MIR SINE MIR 45 196 -66 763 123 57 25 chrX 42671661 42671783 -134302357 + FLAM_C SINE Alu 1 126 -17 233 286 111 10 chrX 42671877 42672076 -134302064 - MER113 DNA MER1_type? -297 224 6 427 317 81 38 chrX 42672290 42672637 -134301503 - REP3 LTR ERV -47 515 154 261 351 36 36 chrX 42672782 42672950 -134301190 - L2 LINE L2 -4 3268 3101 25 0 0 0 chrX 42672965 42672990 -134301150 + AT_rich Low_complexity Low_complexity 1 25 0 1769 208 51 62 chrX 42673188 42673722 -134300418 - L1ME LINE L1 -690 5476 4938 222 37 0 0 chrX 42673722 42673749 -134300391 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2205 71 0 11 chrX 42673751 42674034 -134300106 - AluY SINE Alu -31 280 1 1769 208 51 62 chrX 42674034 42674337 -134299803 - L1ME LINE L1 -1229 4937 4655 4324 184 60 7 chrX 42674350 42675902 -134298238 - L1MA9 LINE L1 -29 6283 4647 1445 238 68 40 chrX 42675908 42676373 -134297767 + L1 LINE L1 2785 3235 -4330 1888 158 7 0 chrX 42676373 42676664 -134297476 + AluSx SINE Alu 1 293 -19 405 0 0 0 chrX 42676666 42676711 -134297429 + (CA)n Simple_repeat Simple_repeat 2 46 0 1445 238 68 40 chrX 42676711 42676797 -134297343 + L1 LINE L1 3235 3355 -4210 627 221 29 0 chrX 42676790 42676930 -134297210 - L1P LINE L1 -1369 4777 4634 * 644 236 68 26 chrX 42676934 42677278 -134296862 + L1 LINE L1 3346 3701 -3864 1143 161 16 8 chrX 42677285 42677527 -134296613 + L1 LINE L1 5732 5975 -1590 2242 81 7 0 chrX 42677528 42677812 -134296328 + AluY SINE Alu 1 286 -25 1281 105 0 10 chrX 42677912 42678121 -134296019 + MER41A-int LTR ERV1 3099 3305 -1710 963 121 10 6 chrX 42678123 42678305 -134295835 + MER41A-int LTR ERV1 2343 2501 -2514 11746 94 25 4 chrX 42678331 42680077 -134294063 + MER41A-int LTR ERV1 4109 5890 -56 3479 73 2 0 chrX 42680078 42680542 -134293598 + MER41A LTR ERV1 3 467 -87 439 254 35 0 chrX 42680602 42680744 -134293396 - L1MEc LINE L1 -4565 1831 1685 1266 83 0 0 chrX 42680760 42680928 -134293212 - L1PA8 LINE L1 -1 6171 6004 7405 124 44 14 chrX 42680928 42681795 -134292345 - L1P3 LINE L1 -5163 1298 381 207 0 0 0 chrX 42681795 42681818 -134292322 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 7405 124 44 14 chrX 42681818 42682206 -134291934 - L1P3 LINE L1 -6080 381 6 2002 202 4 8 chrX 42682222 42682692 -134291448 - L1P LINE L1 -1490 4656 4189 232 275 99 12 chrX 42682956 42683127 -134291013 + L1M4 LINE L1 4629 4814 -1332 24 0 0 0 chrX 42683402 42683426 -134290714 + AT_rich Low_complexity Low_complexity 1 24 0 2409 35 0 0 chrX 42684480 42684766 -134289374 + AluY SINE Alu 1 286 -25 506 30 0 0 chrX 42734769 42734836 -134239304 + L1PA3 LINE L1 6089 6155 0 16714 83 2 2 chrX 42734836 42737285 -134236855 + L1P LINE L1 2065 4514 -1632 9264 59 6 3 chrX 42737385 42739400 -134234740 - L1PA3 LINE L1 -66 6089 4073 2012 112 35 11 chrX 42739412 42739871 -134234269 - L1P4 LINE L1 -567 5598 5129 3328 203 18 9 chrX 42739928 42740720 -134233420 + L1P LINE L1 4296 5094 -1052 2286 193 25 4 chrX 42740730 42741244 -134232896 - L1 LINE L1 -1778 4368 3844 11463 88 5 1 chrX 42741244 42743631 -134230509 - L1PA7 LINE L1 -2 6152 3759 6465 76 9 1 chrX 42743731 42744991 -134229149 + L1PA7 LINE L1 4874 6139 -15 704 238 26 0 chrX 42745002 42745229 -134228911 - L1 LINE L1 -1638 4508 4276 4258 179 37 45 chrX 42745305 42745894 -134228246 - L1MCa LINE L1 -4796 1630 1038 958 196 0 0 chrX 42745894 42746052 -134228088 - FAM SINE Alu -17 158 1 4258 179 37 45 chrX 42746052 42746352 -134227788 - L1MCa LINE L1 -5388 1038 749 2837 141 5 0 chrX 42746352 42746784 -134227356 - MER57B LTR ERV1 0 434 1 4258 179 37 45 chrX 42746784 42747008 -134227132 - L1MCa LINE L1 -5677 749 525 2348 153 41 30 chrX 42747031 42747493 -134226647 - Tigger2 DNA MER2_type -1 2717 2251 1366 142 122 52 chrX 42747493 42747714 -134226426 - THE1C LTR MaLR 0 375 120 3116 162 20 78 chrX 42747714 42748447 -134225693 - LTR8 LTR ERV1 0 691 1 1366 142 122 52 chrX 42748447 42748569 -134225571 - THE1C LTR MaLR -255 120 8 9613 128 34 6 chrX 42748571 42750197 -134223943 - Tigger2 DNA MER2_type -463 2255 584 2703 144 108 11 chrX 42750200 42750729 -134223411 + LTR8A LTR ERV1 1 580 -147 291 312 0 0 chrX 42750907 42750984 -134223156 - L2 LINE L2 -670 2644 2568 1237 192 63 31 chrX 42751284 42751601 -134222539 - LTR8 LTR ERV1 0 691 365 578 171 107 14 chrX 42751605 42751745 -134222395 - LTR1 LTR ERV1 0 785 633 * 704 129 8 15 chrX 42751740 42751872 -134222268 - LTR1 LTR ERV1 -654 131 1 1267 146 2 187 chrX 42751874 42752318 -134221822 - LTR8 LTR ERV1 -329 362 1 49 76 0 0 chrX 42752423 42752528 -134221612 + AT_rich Low_complexity Low_complexity 1 105 0 343 331 54 50 chrX 42752534 42752744 -134221396 - HAL1 LINE L1 -2 2505 2292 798 133 0 0 chrX 42752744 42752864 -134221276 - FLAM_C SINE Alu -13 120 1 343 331 54 50 chrX 42752864 42752895 -134221245 - HAL1 LINE L1 -215 2292 2263 339 197 13 0 chrX 42752975 42753051 -134221089 - MIR SINE MIR -3 259 183 4341 128 1 3 chrX 42755316 42755994 -134218146 + L1PA13 LINE L1 5486 6162 -1 298 105 18 18 chrX 42756060 42756117 -134218023 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 1616 251 94 24 chrX 42756857 42757614 -134216526 + L1M4 LINE L1 2242 3051 -3095 815 151 0 0 chrX 42757624 42757743 -134216397 + FLAM_C SINE Alu 1 119 -24 427 219 66 0 chrX 42757755 42757892 -134216248 + L1M4 LINE L1 4992 5137 -1009 534 293 15 34 chrX 42758195 42758400 -134215740 - MIR SINE MIR 0 262 62 209 367 33 25 chrX 42758761 42758881 -134215259 - MER5A DNA MER1_type -1 188 68 429 191 24 0 chrX 42759655 42759739 -134214401 - AluJ/FRAM SINE Alu -11 301 216 607 195 0 0 chrX 42759758 42759871 -134214269 - FLAM_C SINE Alu -28 115 3 271 214 29 0 chrX 42760085 42760155 -134213985 + MER20B DNA MER1_type 36 107 -676 390 291 39 15 chrX 42760176 42760379 -134213761 + MER20B DNA MER1_type 282 489 -294 448 137 14 0 chrX 42760804 42760877 -134213263 - HERVL68 LTR ERVL -65 2972 2899 288 0 0 0 chrX 42760896 42760928 -134213212 + (TG)n Simple_repeat Simple_repeat 1 32 0 1176 268 8 19 chrX 42760959 42761329 -134212811 - MLT2D LTR ERVL -48 366 1 2024 223 30 19 chrX 42761339 42761903 -134212237 - HERVL68 LTR ERVL -144 2893 2324 384 313 48 12 chrX 42762585 42762751 -134211389 - MIR SINE MIR -62 200 29 2874 66 3 5 chrX 42763562 42763942 -134210198 + L1PA8 LINE L1 5793 6171 -1 298 354 22 58 chrX 42763985 42764262 -134209878 - L2 LINE L2 -188 3084 2818 621 227 71 63 chrX 42764382 42764736 -134209404 + MER39 LTR ERV1 67 622 -85 679 186 0 0 chrX 42765481 42765605 -134208535 + FLAM_C SINE Alu 1 124 -9 2297 105 40 9 chrX 42765747 42766138 -134208002 + LTR3 LTR ERVK 1 432 0 222 239 0 0 chrX 42766609 42766655 -134207485 + A-rich Low_complexity Low_complexity 2 47 0 2433 81 7 0 chrX 42767413 42767720 -134206420 - AluSc SINE Alu 0 309 1 705 251 116 0 chrX 42771643 42771894 -134202246 - L1M4 LINE L1 -1227 4919 4640 353 297 181 20 chrX 42771929 42772283 -134201857 - L2 LINE L2 -1537 1777 1367 3489 214 32 0 chrX 42772310 42773006 -134201134 + MLT1-int LTR MaLR 201 918 -453 1965 214 46 7 chrX 42773171 42773582 -134200558 + MLT1-int LTR MaLR 937 1363 -8 1065 123 3 207 chrX 42773661 42773721 -134200419 - Tigger1 DNA MER2_type -57 2361 2290 1863 74 0 4 chrX 42773721 42773965 -134200175 + L1PB1 LINE L1 5906 6148 -3 1065 123 3 207 chrX 42773965 42774237 -134199903 - Tigger1 DNA MER2_type -128 2290 2097 2397 167 62 0 chrX 42774460 42774879 -134199261 - Tigger1 DNA MER2_type -324 2094 1650 2845 199 35 0 chrX 42775035 42775578 -134198562 + MER68 LTR ERV1 1 562 0 613 320 31 36 chrX 42775630 42776058 -134198082 + HERVL68 LTR ERVL 9 514 -2523 1620 194 3 7 chrX 42776069 42776363 -134197777 + AluJo SINE Alu 1 293 -19 222 91 0 0 chrX 42776639 42776672 -134197468 + (TC)n Simple_repeat Simple_repeat 1 33 0 28 29 0 0 chrX 42776684 42776719 -134197421 + AT_rich Low_complexity Low_complexity 1 35 0 471 235 12 54 chrX 42776720 42776886 -134197254 - MIR SINE MIR -58 204 46 4656 201 10 1 chrX 42777288 42778217 -134195923 - L1M4 LINE L1 -1748 4398 3462 411 168 11 53 chrX 42778200 42778295 -134195845 - L1P LINE L1 -2583 3563 3473 * 6909 65 4 8 chrX 42778295 42779279 -134194861 - L1PA6 LINE L1 -3 6151 5167 522 288 19 0 chrX 42779571 42779731 -134194409 + MIR SINE MIR 90 252 -10 545 128 11 0 chrX 42779926 42780020 -134194120 + L1MA7 LINE L1 6191 6285 -6 1809 127 0 107 chrX 42780242 42780588 -134193552 + AluSx SINE Alu 1 309 -3 335 282 97 41 chrX 42780621 42780816 -134193324 - L3 LINE CR1 -7 1570 1365 281 325 56 90 chrX 42780868 42781383 -134192757 - L2 LINE L2 -50 3222 2720 1575 155 70 7 chrX 42782852 42783123 -134191017 - AluSx SINE Alu -24 288 1 2192 120 3 3 chrX 42783240 42783539 -134190601 - AluSx SINE Alu -13 299 1 489 337 132 22 chrX 42783545 42783955 -134190185 - L3 LINE CR1 -343 1234 780 370 331 8 8 chrX 42784096 42784220 -134189920 - L3 LINE CR1 -827 750 627 314 230 0 14 chrX 42785333 42785407 -134188733 - MER52A LTR ERV1 -4 1751 1679 * 3819 197 74 85 chrX 42785395 42786578 -134187562 - MER52A LTR ERV1 -561 1194 25 1547 135 106 14 chrX 42788075 42788376 -134185764 - AluSx SINE Alu 0 312 2 2053 188 26 114 chrX 42789268 42789821 -134184319 + MLT2B3 LTR ERVL 1 498 -56 486 0 0 0 chrX 42789821 42789875 -134184265 + (TG)n Simple_repeat Simple_repeat 2 55 0 2053 188 26 114 chrX 42789875 42789928 -134184212 + MLT2B3 LTR ERVL 498 554 0 582 263 62 11 chrX 42790744 42790923 -134183217 + MER5A DNA MER1_type 2 189 0 187 227 160 13 chrX 42791268 42791343 -134182797 + L2 LINE L2 3228 3313 0 296 245 77 49 chrX 42792275 42792434 -134181706 - MIR SINE MIR -68 140 5 291 114 0 0 chrX 42792440 42792484 -134181656 + (TC)n Simple_repeat Simple_repeat 1 44 0 323 207 0 9 chrX 42794048 42794159 -134179981 + C-rich Low_complexity Low_complexity 4 113 0 50 114 0 0 chrX 42796296 42796542 -134177598 + AT_rich Low_complexity Low_complexity 1 246 0 26 30 0 0 chrX 42796927 42796960 -134177180 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 42797025 42797046 -134177094 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chrX 42797145 42797174 -134176966 + AT_rich Low_complexity Low_complexity 1 29 0 203 374 37 0 chrX 42797743 42797850 -134176290 + L2 LINE L2 2952 3062 -251 251 193 29 164 chrX 42798674 42798814 -134175326 + MLT1K LTR MaLR 129 249 -339 626 212 71 38 chrX 42798943 42799127 -134175013 + MLT1K LTR MaLR 391 580 -8 351 327 64 45 chrX 42799372 42799592 -134174548 - MIR SINE MIR -15 247 24 196 372 32 6 chrX 42800816 42800972 -134173168 + L2 LINE L2 1747 1906 -1408 1364 170 18 102 chrX 42802530 42802872 -134171268 - MLT2A2 LTR ERVL -140 313 1 1214 281 51 13 chrX 42802874 42803326 -134170814 - Charlie4a DNA MER1_type -1 507 39 1100 239 33 41 chrX 42803529 42803720 -134170420 + L1M4 LINE L1 2490 2681 -3465 1148 175 117 61 chrX 42803720 42804046 -134170094 + MER2 DNA MER2_type 1 344 0 1100 239 33 41 chrX 42804046 42804085 -134170055 + L1M4 LINE L1 2681 2719 -3427 507 238 181 36 chrX 42804085 42804278 -134169862 - MER58A DNA MER1_type 0 224 4 1100 239 33 41 chrX 42804278 42804465 -134169675 + L1M4 LINE L1 2719 2905 -3241 773 213 96 52 chrX 42804551 42804842 -134169298 + L1M4 LINE L1 3679 3982 -2164 518 204 9 0 chrX 42804839 42804952 -134169188 - L1M4 LINE L1 -884 5262 5149 * 3831 169 76 87 chrX 42804946 42805188 -134168952 - L1MA5A LINE L1 0 6297 6054 2208 93 0 10 chrX 42805188 42805488 -134168652 + AluSx SINE Alu 1 297 -15 3831 169 76 87 chrX 42805488 42806512 -134167628 - L1MA5A LINE L1 -243 6054 5046 232 276 8 60 chrX 42806518 42806652 -134167488 + MIR SINE MIR 125 251 -11 391 306 198 16 chrX 42806655 42806969 -134167171 + L2 LINE L2 2888 3258 -55 265 209 337 0 chrX 42807027 42807113 -134167027 - MIR SINE MIR -97 165 51 297 0 0 0 chrX 42808760 42808793 -134165347 + (T)n Simple_repeat Simple_repeat 1 33 0 2267 105 0 3 chrX 42810270 42810600 -134163540 + AluSg SINE Alu 1 329 0 2247 103 3 10 chrX 42811302 42811614 -134162526 + AluSx SINE Alu 1 310 -2 219 36 0 0 chrX 42812702 42812730 -134161410 + (CA)n Simple_repeat Simple_repeat 2 29 0 491 246 80 78 chrX 42813484 42813984 -134160156 - L1MC5 LINE L1 -10 7951 7451 252 100 0 0 chrX 42815028 42815068 -134159072 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 287 284 32 0 chrX 42815428 42815523 -134158617 + Charlie7 DNA MER1_type 4 101 -2511 * 370 184 34 75 chrX 42815515 42815662 -134158478 + Charlie7 DNA MER1_type 2434 2574 -38 1932 191 48 35 chrX 42815670 42816126 -134158014 - MLT1C LTR MaLR 0 467 6 409 312 68 43 chrX 42816809 42817043 -134157097 + MIR SINE MIR 12 251 -11 344 235 23 91 chrX 42817371 42817503 -134156637 - L2 LINE L2 0 3313 3191 357 24 0 0 chrX 42817905 42817947 -134156193 + (GA)n Simple_repeat Simple_repeat 1 42 0 183 129 0 0 chrX 42819822 42819853 -134154287 + (GA)n Simple_repeat Simple_repeat 2 32 0 191 289 0 0 chrX 42819926 42819971 -134154169 + MIR SINE MIR 106 150 -112 29 60 0 0 chrX 42820524 42820574 -134153566 + AT_rich Low_complexity Low_complexity 1 50 0 511 259 55 68 chrX 42821020 42821329 -134152811 + MER5C DNA MER1_type 17 321 -3 233 173 58 0 chrX 42822171 42822223 -134151917 + LTR13 LTR ERVK 661 715 -292 186 43 0 0 chrX 42822223 42822246 -134151894 + (TC)n Simple_repeat Simple_repeat 2 24 0 438 65 0 0 chrX 42822246 42822308 -134151832 + (CA)n Simple_repeat Simple_repeat 1 62 0 360 0 0 0 chrX 42822356 42822396 -134151744 + (TG)n Simple_repeat Simple_repeat 2 41 0 397 345 65 0 chrX 42822834 42823034 -134151106 + MIR SINE MIR 36 248 -14 4139 255 49 47 chrX 42823161 42824736 -134149404 + L2 LINE L2 1545 3114 -199 189 0 0 0 chrX 42824736 42824757 -134149383 + (CCA)n Simple_repeat Simple_repeat 2 22 0 4139 255 49 47 chrX 42824757 42824958 -134149182 + L2 LINE L2 3114 3313 0 286 340 77 30 chrX 42826193 42826428 -134147712 + MIR SINE MIR 5 250 -12 194 214 43 71 chrX 42827272 42827342 -134146798 + MIR SINE MIR 30 97 -111 201 318 36 45 chrX 42827692 42827802 -134146338 + L2 LINE L2 3160 3268 -4 232 235 39 0 chrX 42829088 42829139 -134145001 + L2 LINE L2 3202 3254 -18 186 43 0 0 chrX 42832855 42832878 -134141262 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 229 196 0 0 chrX 42832882 42832928 -134141212 + LTR66 LTR ERVL 394 439 -171 * 231 167 0 0 chrX 42832900 42832942 -134141198 - LTR66 LTR ERVL -171 439 398 198 103 0 0 chrX 42832942 42832971 -134141169 + (TA)n Simple_repeat Simple_repeat 1 29 0 432 186 59 0 chrX 42833766 42833868 -134140272 + MIR SINE MIR 123 230 -32 280 374 77 7 chrX 42834692 42835002 -134139138 - L1ME3A LINE L1 -240 5930 5599 421 319 145 15 chrX 42835488 42835826 -134138314 - L2 LINE L2 -555 2759 2378 201 138 0 0 chrX 42837032 42837061 -134137079 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 187 346 89 0 chrX 42837341 42837442 -134136698 - MIR SINE MIR -43 219 110 2915 3 0 0 chrX 42837465 42837776 -134136364 + AluYa5 SINE Alu 1 311 0 248 340 56 14 chrX 42837878 42838022 -134136118 - MIR SINE MIR -94 168 19 649 323 45 50 chrX 42838554 42838972 -134135168 - L2 LINE L2 -737 2577 2162 21 71 0 0 chrX 42839032 42839074 -134135066 + AT_rich Low_complexity Low_complexity 1 42 0 578 179 0 0 chrX 42839353 42839448 -134134692 - MLT1B LTR MaLR 0 390 296 189 275 0 0 chrX 42839789 42839829 -134134311 - MIR SINE MIR -5 257 218 * 331 373 78 43 chrX 42839828 42840174 -134133966 - L2 LINE L2 -1 3271 2914 433 298 85 29 chrX 42840265 42840652 -134133488 - L1ME LINE L1 -297 5824 5423 314 271 59 0 chrX 42840733 42840773 -134133367 - L1MA10 LINE L1 -41 6293 6254 3297 215 35 29 chrX 42840773 42841775 -134132365 - L1ME1 LINE L1 -76 6090 5078 2585 154 4 20 chrX 42841768 42841878 -134132262 - L1PB4 LINE L1 -1 6155 6046 * 6118 177 70 25 chrX 42841878 42842541 -134131599 - L1MA4 LINE L1 -261 6039 5407 2050 121 27 7 chrX 42842541 42842839 -134131301 - AluSq SINE Alu -9 304 1 6118 177 70 25 chrX 42842839 42842862 -134131278 - L1MA4 LINE L1 -893 5407 5386 198 0 0 0 chrX 42842862 42842884 -134131256 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 6118 177 70 25 chrX 42842884 42844076 -134130064 - L1MA4 LINE L1 -914 5386 4072 2070 245 43 18 chrX 42844099 42844772 -134129368 - L1ME1 LINE L1 -2512 3634 2945 368 132 15 0 chrX 42844928 42844996 -134129144 - L1PB4 LINE L1 -1098 5048 4980 825 242 45 0 chrX 42844999 42845197 -134128943 - L1PA13 LINE L1 -4861 1926 1720 303 353 0 10 chrX 42845193 42845295 -134128845 - L1PA13 LINE L1 -5360 1427 1327 * 2084 304 38 36 chrX 42845360 42846116 -134128024 - L1PA13 LINE L1 -5923 864 104 1955 146 0 29 chrX 42846116 42846425 -134127715 - AluSx SINE Alu -12 300 1 2084 304 38 36 chrX 42846425 42846530 -134127610 - L1PA13 LINE L1 -6683 104 1 2719 233 33 38 chrX 42846540 42847507 -134126633 - L1M4 LINE L1 -2797 3847 2886 225 179 0 0 chrX 42847903 42847959 -134126181 - L1MA7 LINE L1 -1 6290 6235 4972 237 86 27 chrX 42847970 42850133 -134124007 - L1M4 LINE L1 -3746 2898 626 287 302 94 19 chrX 42850462 42850621 -134123519 - L1M4 LINE L1 -6297 245 75 5509 247 42 30 chrX 42850664 42852954 -134121186 - L1MEc LINE L1 -2259 4385 2115 * 9469 25 4 0 chrX 42852948 42854047 -134120093 - L1P LINE L1 -1318 4828 3726 6398 33 0 0 chrX 42854047 42854750 -134119390 + L1PA3 LINE L1 5451 6155 0 539 257 55 38 chrX 42854750 42854961 -134119179 - L1MEc LINE L1 -4666 1980 1763 520 205 17 0 chrX 42854964 42855081 -134119059 + L1M4c LINE L1 2305 2423 -3961 4242 259 53 42 chrX 42855082 42856090 -134118050 - L1MEc LINE L1 -4833 1709 718 2379 176 26 16 chrX 42856090 42856517 -134117623 + MSTB1 LTR MaLR 1 431 -1 4242 259 53 42 chrX 42856517 42857235 -134116905 - L1MEc LINE L1 -5824 718 9 2419 289 30 57 chrX 42860849 42861767 -134112373 + L1MDa LINE L1 16 991 -5549 9364 58 0 1 chrX 42861768 42862954 -134111186 - L1P LINE L1 -3175 2971 1787 3351 43 0 0 chrX 42862952 42863346 -134110794 + L1P LINE L1 3872 4265 -1881 * 1592 215 74 49 chrX 42863351 42863580 -134110560 + L1MD2 LINE L1 5914 6161 -198 339 25 0 0 chrX 42863580 42863620 -134110520 + (CA)n Simple_repeat Simple_repeat 1 40 0 1592 215 74 49 chrX 42863620 42863822 -134110318 + L1MD2 LINE L1 6161 6356 -3 869 213 59 29 chrX 42863918 42864157 -134109983 - MLT1B LTR MaLR -141 249 4 246 250 15 15 chrX 42864325 42864393 -134109747 - MER20B DNA MER1_type 0 783 716 1113 261 50 39 chrX 42864417 42864774 -134109366 + MLT1I LTR MaLR 41 401 -8 243 141 16 94 chrX 42864780 42864844 -134109296 - MER20B DNA MER1_type -61 722 664 1317 92 54 14 chrX 42866025 42866337 -134107803 + THE1C LTR MaLR 1 375 0 22847 21 0 0 chrX 42868216 42872904 -134101236 - L1HS LINE L1 0 6155 1468 2183 233 119 2 chrX 42873189 42874237 -134099903 + MER69B DNA AcHobo 1 1214 -12 236 309 0 0 chrX 42874333 42874388 -134099752 + (TG)n Simple_repeat Simple_repeat 2 56 0 29 0 0 0 chrX 42874738 42874767 -134099373 + AT_rich Low_complexity Low_complexity 1 29 0 1086 303 75 36 chrX 42875581 42876023 -134098117 + MLT1E LTR MaLR 1 459 -134 987 112 22 0 chrX 42876110 42876244 -134097896 + AluSq/x SINE Alu 1 137 -175 636 225 7 0 chrX 42876248 42876386 -134097754 + MLT1F LTR MaLR 404 542 0 4352 136 20 11 chrX 42876446 42877190 -134096950 - L1MA8 LINE L1 -3 6288 5538 463 322 105 0 chrX 42878477 42878648 -134095492 - MER5A DNA MER1_type 0 189 1 1389 287 65 43 chrX 42879133 42880024 -134094116 + L1MB5 LINE L1 18 1079 -5567 24149 174 15 23 chrX 42880032 42882441 -134091699 + L1PA10 LINE L1 10 2437 -4046 2211 112 0 0 chrX 42882441 42882755 -134091385 + AluSq SINE Alu 1 314 0 24149 174 15 23 chrX 42882755 42886857 -134087283 + L1PA10 LINE L1 2437 6474 -9 2853 236 36 47 chrX 42886884 42888273 -134085867 + L1MB5 LINE L1 1069 2535 -4111 * 5097 251 45 12 chrX 42888270 42890035 -134084105 + L1MB5 LINE L1 3238 5060 -1584 2402 138 102 9 chrX 42890035 42890498 -134083642 + L1MA8 LINE L1 5764 6269 -22 23 54 0 0 chrX 42890499 42890536 -134083604 + AT_rich Low_complexity Low_complexity 1 37 0 2898 205 28 44 chrX 42890536 42891873 -134082267 + L1MB5 LINE L1 5047 6371 -301 5756 116 17 6 chrX 42891873 42893350 -134080790 + L1PA15 LINE L1 4694 6162 -3 2898 205 28 44 chrX 42893350 42893431 -134080709 + L1MB5 LINE L1 6371 6452 -220 2643 204 52 38 chrX 42893462 42893541 -134080599 + L1PB4 LINE L1 783 859 -5444 1628 146 24 3 chrX 42893541 42893828 -134080312 - L1MA6 LINE L1 -9 6291 5999 2643 204 52 38 chrX 42893828 42894611 -134079529 + L1PB4 LINE L1 859 1787 -4516 * 5409 177 14 10 chrX 42894601 42896577 -134077563 + L1PB4 LINE L1 4398 6381 -11 2215 200 28 92 chrX 42896580 42896916 -134077224 + L1M4 LINE L1 2179 2535 -4976 716 109 0 0 chrX 42896916 42897017 -134077123 + HY3 scRNA scRNA 1 101 0 2215 200 28 92 chrX 42897017 42897519 -134076621 + L1M4 LINE L1 2535 2900 -4611 2162 116 20 0 chrX 42897519 42897812 -134076328 + AluSx SINE Alu 1 299 -13 2215 200 28 92 chrX 42897812 42897899 -134076241 + L1M4 LINE L1 2900 2991 -4520 1094 116 0 0 chrX 42897899 42898045 -134076095 + AluSq/x SINE Alu 1 146 -166 501 122 0 0 chrX 42898045 42898119 -134076021 + AluS SINE Alu 227 300 -9 2774 244 33 75 chrX 42898250 42899224 -134074916 + L1M4 LINE L1 3196 4085 -3480 1936 173 40 3 chrX 42899224 42899576 -134074564 + MLT1A1 LTR MaLR 1 365 0 2774 244 33 75 chrX 42899576 42900214 -134073926 + L1M4 LINE L1 4085 4748 -2817 7804 14 0 0 chrX 42900240 42901134 -134073006 - L1PA2 LINE L1 -8 6147 5254 5198 214 72 54 chrX 42901136 42903568 -134070572 + L1MA9 LINE L1 3559 5947 -601 2132 149 33 0 chrX 42903568 42903903 -134070237 + MER7A DNA MER2_type 1 344 -2 186 43 0 0 chrX 42903903 42903926 -134070214 + (TA)n Simple_repeat Simple_repeat 2 24 0 5198 214 72 54 chrX 42903926 42904411 -134069729 + L1MA9 LINE L1 5946 6524 -24 2468 210 9 11 chrX 42904420 42904991 -134069149 + L1MA10 LINE L1 5765 6334 0 997 265 11 4 chrX 42905001 42905280 -134068860 + L1M4 LINE L1 6208 6488 -1077 2136 105 3 7 chrX 42907152 42907448 -134066692 - AluSx SINE Alu -17 295 1 313 300 46 92 chrX 42908441 42908504 -134065636 - L1MC4a LINE L1 -504 5727 5663 2322 85 0 16 chrX 42908504 42908809 -134065331 - AluSq SINE Alu -13 300 1 313 300 46 92 chrX 42908809 42909216 -134064924 - L1MC4a LINE L1 -568 5663 5504 25 0 0 0 chrX 42909318 42909343 -134064797 + AT_rich Low_complexity Low_complexity 1 25 0 296 291 138 21 chrX 42909348 42909674 -134064466 - L1ME3A LINE L1 -222 5948 5585 * 416 214 36 46 chrX 42909655 42909874 -134064266 - L1M1 LINE L1 -691 5479 5263 1768 138 47 4 chrX 42910072 42910348 -134063792 + AluJb SINE Alu 1 288 -24 21 0 0 0 chrX 42910348 42910369 -134063771 + AT_rich Low_complexity Low_complexity 1 21 0 306 231 167 0 chrX 42910401 42910479 -134063661 - L2 LINE L2 -2 3311 3221 243 100 0 0 chrX 42910499 42910539 -134063601 - Alu SINE Alu -7 301 262 2246 95 0 26 chrX 42910543 42910849 -134063291 - AluSx SINE Alu -14 298 1 206 282 145 16 chrX 42910850 42910974 -134063166 - L2 LINE L2 -90 3223 3084 353 339 31 12 chrX 42911004 42911323 -134062817 - L1ME3A LINE L1 -1356 4790 4466 332 308 40 18 chrX 42911400 42911554 -134062586 - L1ME3A LINE L1 -3127 3019 2857 2055 77 0 4 chrX 42911554 42911815 -134062325 + AluSq SINE Alu 39 298 -15 332 308 40 18 chrX 42911815 42911887 -134062253 - L1ME3A LINE L1 -3289 2857 2788 244 260 92 25 chrX 42912037 42912233 -134061907 - L1MC4a LINE L1 -1306 4909 4701 346 307 151 0 chrX 42912303 42912469 -134061671 - L1MC4a LINE L1 -3616 2599 2409 1841 164 3 3 chrX 42912648 42912941 -134061199 - AluJb SINE Alu -19 293 1 303 246 85 39 chrX 42913369 42913499 -134060641 - HAL1 LINE L1 -860 1647 1512 801 245 45 20 chrX 42913578 42913823 -134060317 + L1ME2 LINE L1 5910 6160 -4 302 291 51 33 chrX 42914437 42914683 -134059457 - L1MEd LINE L1 -4876 1329 1151 28457 130 16 55 chrX 42914700 42921115 -134053025 - L1PA8 LINE L1 -7 6165 13 515 269 79 53 chrX 42921129 42921495 -134052645 - L1MEd LINE L1 -5053 1152 802 32 0 0 0 chrX 42921870 42921902 -134052238 + AT_rich Low_complexity Low_complexity 1 32 0 301 231 39 0 chrX 42922855 42922933 -134051207 - MIR SINE MIR -63 199 119 251 71 24 0 chrX 42923835 42923877 -134050263 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2255 117 3 0 chrX 42924078 42924385 -134049755 - AluSc SINE Alu -1 308 1 399 35 0 85 chrX 42924702 42924781 -134049359 - MLT2A2 LTR ERVL 0 453 386 206 140 0 20 chrX 42924781 42924831 -134049309 + (TA)n Simple_repeat Simple_repeat 1 49 0 319 200 11 63 chrX 42924837 42924932 -134049208 + L1MC4 LINE L1 6614 6703 -1339 450 178 0 32 chrX 42924939 42925124 -134049016 + (TA)n Simple_repeat Simple_repeat 1 179 0 249 253 0 11 chrX 42925139 42925230 -134048910 + L1MC4 LINE L1 6614 6703 -1339 454 212 4 18 chrX 42925238 42926059 -134048081 + (TA)n Simple_repeat Simple_repeat 1 809 0 10908 35 0 0 chrX 42926065 42927444 -134046696 - L1P LINE L1 -1492 4654 3276 559 169 9 36 chrX 42927450 42928358 -134045782 + (TA)n Simple_repeat Simple_repeat 1 883 0 350 151 11 43 chrX 42928371 42928557 -134045583 + (TA)n Simple_repeat Simple_repeat 1 180 0 1064 101 13 0 chrX 42928579 42928738 -134045402 + HERVL LTR ERVL 4862 5022 -632 424 119 17 45 chrX 42928757 42928934 -134045206 + (TA)n Simple_repeat Simple_repeat 1 172 0 2766 91 10 5 chrX 42928934 42929330 -134044810 - MLT2A1 LTR ERVL -46 398 1 28594 69 9 1 chrX 42929330 42933125 -134041015 - HERVL-A1 LTR ERVL 0 5654 1831 887 237 60 5 chrX 42934307 42934522 -134039618 + MIR SINE MIR 9 235 -27 328 238 25 12 chrX 42934530 42934610 -134039530 + L2 LINE L2 3190 3270 -2 458 242 26 25 chrX 42934768 42934897 -134039243 - MIR SINE MIR -62 146 38 551 348 72 65 chrX 42935057 42935474 -134038666 - L2 LINE L2 -2 3270 2851 25 0 0 0 chrX 42936215 42936240 -134037900 + AT_rich Low_complexity Low_complexity 1 25 0 333 339 9 26 chrX 42936492 42936607 -134037533 + L1M3c LINE L1 3 115 -6026 1659 148 7 0 chrX 42937355 42937626 -134036514 - L1PB3 LINE L1 0 6154 5882 8192 214 30 20 chrX 42937627 42938341 -134035799 - L1PBb LINE L1 -1937 4911 4205 2516 63 0 0 chrX 42938341 42938644 -134035496 - AluY SINE Alu -8 303 1 8192 214 30 20 chrX 42938644 42941293 -134032847 - L1PBb LINE L1 -2643 4205 1326 437 88 150 0 chrX 42941295 42941375 -134032765 + L1PBb LINE L1 648 739 -5465 3380 251 32 24 chrX 42941380 42942664 -134031476 - L1PBa LINE L1 -5220 1629 17 268 316 59 20 chrX 42942667 42942819 -134031321 - L1PA15-16 LINE L1 -5419 1430 1273 * 2028 317 39 34 chrX 42942787 42944207 -134029933 - L1PA15-16 LINE L1 -5441 1409 1 2379 54 0 7 chrX 42944422 42944717 -134029423 + AluY SINE Alu 2 294 -17 8419 106 13 1 chrX 42944719 42945951 -134028189 - HSMAR1 DNA Mariner -19 1268 22 1052 188 16 0 chrX 42946080 42946272 -134027868 - MLT2D LTR ERVL -219 195 1 25552 172 66 47 chrX 42946277 42947309 -134026831 - ERVL-D LTR ERVL -12 5752 4741 331 248 54 47 chrX 42947309 42947438 -134026702 + AluJo SINE Alu 3 132 -170 25552 172 66 47 chrX 42947438 42948488 -134025652 - ERVL-D LTR ERVL -1023 4741 3713 2062 117 27 24 chrX 42948488 42948786 -134025354 + AluSx SINE Alu 1 299 -13 25552 172 66 47 chrX 42948786 42952187 -134021953 - ERVL-D LTR ERVL -2051 3713 33 5548 79 19 53 chrX 42952210 42953287 -134020853 + SVA Other Other 1 866 -520 650 67 7 44 chrX 42953304 42953439 -134020701 + SVA Other Other 665 794 -592 6928 59 6 49 chrX 42953452 42954449 -134019691 + SVA Other Other 433 1386 0 250 164 0 0 chrX 42954498 42954548 -134019592 - MLT2D LTR ERVL -7 457 418 339 25 0 0 chrX 42954563 42954603 -134019537 + (TG)n Simple_repeat Simple_repeat 2 41 0 1938 167 19 33 chrX 42954630 42954996 -134019144 - MLT2D LTR ERVL -53 361 1 215 243 0 14 chrX 42955041 42955111 -134019029 + (TA)n Simple_repeat Simple_repeat 1 69 0 2365 68 3 3 chrX 42958144 42958436 -134015704 + AluSp SINE Alu 1 292 -21 186 297 177 46 chrX 42958882 42959057 -134015083 + MIR SINE MIR 59 256 -6 317 339 43 21 chrX 42960016 42960202 -134013938 - L2 LINE L2 -2595 719 530 1053 128 6 18 chrX 42961186 42961350 -134012790 + AluJo SINE Alu 134 295 -17 617 172 0 0 chrX 42961809 42961925 -134012215 + L1MB3 LINE L1 6068 6183 0 1148 133 21 16 chrX 42964672 42964860 -134009280 - MER5A DNA MER1_type 0 189 1 674 295 79 4 chrX 42965222 42965449 -134008691 - MIR SINE MIR -14 248 5 211 369 31 39 chrX 42965665 42965795 -134008345 + L3b LINE CR1 1344 1472 -111 604 280 63 5 chrX 42965959 42966148 -134007992 - L2 LINE L2 -5 3308 3109 2042 179 32 46 chrX 42966168 42966672 -134007468 + MLT1D LTR MaLR 4 500 -5 1672 211 9 70 chrX 42966693 42967138 -134007002 - MLT2B1 LTR ERVL -97 423 6 1180 246 33 45 chrX 42967146 42967604 -134006536 - L2 LINE L2 -245 3068 2621 1978 195 22 76 chrX 42967605 42968147 -134005993 + MLT2B3 LTR ERVL 1 403 -50 295 175 0 0 chrX 42968229 42968286 -134005854 + MLT2B3 LTR ERVL 464 520 0 1174 225 132 59 chrX 42968287 42968727 -134005413 - L2 LINE L2 -691 2623 2152 21 0 0 0 chrX 42968732 42968753 -134005387 + AT_rich Low_complexity Low_complexity 1 21 0 1608 153 19 101 chrX 42968829 42969207 -134004933 + MER7A DNA MER2_type 1 345 -1 470 281 22 14 chrX 42969315 42969454 -134004686 - MIR SINE MIR 0 262 123 357 341 40 29 chrX 42969530 42969703 -134004437 - MIR SINE MIR -54 208 34 659 113 9 52 chrX 42969745 42969860 -134004280 + MER3 DNA MER1_type 1 110 -99 1245 19 0 6 chrX 42969860 42970018 -134004122 - L1PA3 LINE L1 -61 6094 5938 454 31 15 0 chrX 42970018 42970082 -134004058 + L1PA2 LINE L1 6090 6155 0 445 170 57 9 chrX 42970123 42970229 -134003911 + MER3 DNA MER1_type 99 209 0 265 208 0 0 chrX 42970187 42970240 -134003900 - MER3 DNA MER1_type -120 89 37 * 333 318 122 25 chrX 42970317 42970562 -134003578 + L1 LINE L1 3539 3807 -2339 48 0 0 0 chrX 42970590 42970638 -134003502 + AT_rich Low_complexity Low_complexity 1 48 0 1472 218 33 45 chrX 42970804 42971299 -134002841 + MLT1E LTR MaLR 47 593 0 352 294 81 60 chrX 42971540 42971788 -134002352 + L1ME LINE L1 5549 5801 -320 1219 251 145 42 chrX 42971808 42972157 -134001983 - MLT1J LTR MaLR -9 502 94 2161 128 3 0 chrX 42972157 42972462 -134001678 - AluSx SINE Alu -6 306 1 1219 251 145 42 chrX 42972462 42972567 -134001573 - MLT1J LTR MaLR -417 94 1 644 280 6 11 chrX 42973121 42973303 -134000837 + L2 LINE L2 1812 1992 -1322 39235 79 11 8 chrX 42973303 42979430 -133994710 - L1PA6 LINE L1 0 6154 10 206 272 120 0 chrX 42979430 42979522 -133994618 + L2 LINE L2 1984 2086 -1228 256 279 108 32 chrX 42979574 42979732 -133994408 + L2 LINE L2 2203 2372 -942 482 260 23 51 chrX 42980034 42980211 -133993929 + L2 LINE L2 3126 3297 -16 1844 120 175 71 chrX 42981079 42981445 -133992695 - MER4A LTR ERV1 0 664 261 468 154 77 0 chrX 42981445 42981536 -133992604 - MER4A LTR ERV1 -566 98 1 200 372 0 27 chrX 42981676 42981795 -133992345 + MIR SINE MIR 35 148 -83 610 230 62 17 chrX 42982417 42982595 -133991545 - MIR SINE MIR -71 191 6 689 243 132 0 chrX 42982619 42982808 -133991332 + MIR SINE MIR 13 226 -36 2275 115 0 0 chrX 42983124 42983437 -133990703 - L1PA13 LINE L1 -1 6162 5850 460 268 14 22 chrX 42983459 42983597 -133990543 - L1ME LINE L1 -420 5701 5565 4453 157 6 1 chrX 42983691 42985004 -133989136 + L1PB1 LINE L1 4475 5791 -360 665 120 3 53 chrX 42985004 42985386 -133988754 + (TA)n Simple_repeat Simple_repeat 1 362 0 285 58 92 23 chrX 42985439 42985526 -133988614 + (CATAT)n Simple_repeat Simple_repeat 3 95 0 2528 128 8 3 chrX 42985526 42985894 -133988246 + L1PB1 LINE L1 5781 6150 -1 702 222 40 0 chrX 42985896 42986072 -133988068 + Charlie2 DNA MER1_type 2644 2826 -36 785 223 36 0 chrX 42986074 42986240 -133987900 - MER5B DNA MER1_type -1 177 6 25 31 0 0 chrX 42986675 42986707 -133987433 + AT_rich Low_complexity Low_complexity 1 32 0 270 128 0 0 chrX 42987105 42987144 -133986996 - L1MB7 LINE L1 -262 5922 5884 534 266 84 44 chrX 42987379 42987582 -133986558 - MIR SINE MIR -18 244 34 370 297 88 20 chrX 42988426 42988574 -133985566 - MIR SINE MIR 0 262 105 2144 196 39 61 chrX 42988574 42989135 -133985005 - MLT2B3 LTR ERVL -5 549 1 246 319 14 14 chrX 42989159 42989228 -133984912 - MIR SINE MIR -180 82 14 2050 17 0 0 chrX 42989308 42989540 -133984600 - L1PA3 LINE L1 -1073 5073 4842 8109 22 7 0 chrX 42989540 42990610 -133983530 + L1PA3 LINE L1 5071 6152 -3 1206 308 75 15 chrX 42990627 42991105 -133983035 + L2 LINE L2 2805 3311 -2 364 342 61 52 chrX 42991114 42991345 -133982795 - L2 LINE L2 -13 3259 3027 637 237 111 21 chrX 42991970 42992160 -133981980 + MIR SINE MIR 53 259 -3 25 31 0 0 chrX 42992594 42992626 -133981514 + AT_rich Low_complexity Low_complexity 1 32 0 288 0 0 0 chrX 42992756 42992788 -133981352 + (TG)n Simple_repeat Simple_repeat 1 32 0 820 181 107 52 chrX 42992788 42993130 -133981010 - LTR7 LTR ERV1 -46 404 1 3840 100 11 12 chrX 42993130 42993688 -133980452 - HERVH LTR ERV1 0 7713 7157 1661 142 0 0 chrX 42993681 42993942 -133980198 - HERVH LTR ERV1 -1697 6016 5756 * 4126 146 6 16 chrX 42993932 42995204 -133978936 - HERVH LTR ERV1 -1925 4729 3357 12997 128 36 23 chrX 42995204 42997680 -133976460 - HERVH LTR ERV1 -4883 2830 1 742 93 0 19 chrX 42997680 42997787 -133976353 - LTR7 LTR ERV1 0 450 346 561 224 168 52 chrX 42998044 42998276 -133975864 - MIR SINE MIR -2 260 2 2164 125 3 3 chrX 42999169 42999474 -133974666 - AluSx SINE Alu -7 305 1 224 254 0 42 chrX 42999510 42999581 -133974559 + L2 LINE L2 2929 2996 -276 617 293 79 35 chrX 42999588 43000279 -133973861 - L1ME LINE L1 -452 5669 4954 1674 124 11 11 chrX 43000405 43000671 -133973469 + L1MA8 LINE L1 5897 6162 -129 8634 126 53 26 chrX 43000735 43002183 -133971957 - Tigger3(Golem) DNA MER2_type 0 3029 1543 7373 172 39 18 chrX 43002197 43002309 -133971831 + L1PB4 LINE L1 3734 3842 -2461 1015 120 0 0 chrX 43002309 43002442 -133971698 + FLAM_C SINE Alu 1 133 0 7373 172 39 18 chrX 43002442 43002513 -133971627 + L1PB4 LINE L1 3842 3910 -2393 1900 152 0 3 chrX 43002513 43002809 -133971331 + AluJb SINE Alu 3 297 -15 7373 172 39 18 chrX 43002809 43005021 -133969119 + L1PB4 LINE L1 3910 6300 -3 348 314 8 17 chrX 43005069 43005187 -133968953 + MIR SINE MIR 13 129 -133 380 292 59 45 chrX 43005197 43005240 -133968900 - MER112 DNA MER1_type -55 205 164 2339 83 13 10 chrX 43005240 43005552 -133968588 + AluSq SINE Alu 1 313 0 380 292 59 45 chrX 43005552 43005710 -133968430 - MER112 DNA MER1_type -96 164 1 478 250 37 43 chrX 43006449 43006613 -133967527 - MIR SINE MIR -65 197 35 308 254 142 15 chrX 43006649 43006783 -133967357 + MIR SINE MIR 72 222 -40 2454 157 46 10 chrX 43006910 43007323 -133966817 + MSTA LTR MaLR 1 428 0 799 231 95 13 chrX 43007781 43008009 -133966131 - MIR SINE MIR -1 261 16 300 313 10 21 chrX 43008249 43008345 -133965795 + L2 LINE L2 3146 3240 -32 378 61 45 0 chrX 43008398 43008464 -133965676 + GA-rich Low_complexity Low_complexity 2 70 0 596 312 15 10 chrX 43009050 43009249 -133964891 + MIR SINE MIR 61 260 -2 233 241 152 0 chrX 43009763 43009842 -133964298 - MIR SINE MIR -1 261 171 613 238 67 36 chrX 43009872 43010095 -133964045 + L1MC5 LINE L1 7697 7926 -35 577 289 96 8 chrX 43010167 43010422 -133963718 + L2 LINE L2 2736 3009 -304 42715 60 8 0 chrX 43010456 43016564 -133957576 - L1PA4 LINE L1 0 6155 1 619 306 78 17 chrX 43016565 43016859 -133957281 + L2 LINE L2 2994 3305 -8 7413 173 106 26 chrX 43017609 43019143 -133954997 + MER52A LTR ERV1 1 1755 0 308 274 52 15 chrX 43019419 43019560 -133954580 + MIR SINE MIR 32 177 -72 365 322 75 14 chrX 43019616 43019762 -133954378 + L2 LINE L2 3102 3256 -16 4432 218 33 6 chrX 43020883 43021935 -133952205 - L1 LINE L1 -981 5165 4085 3884 162 41 32 chrX 43021935 43022817 -133951323 + L1PB3 LINE L1 3156 4045 -2101 * 7066 123 58 45 chrX 43022813 43023991 -133950149 - L1PBa LINE L1 -5504 1359 160 4434 115 8 3 chrX 43023991 43024600 -133949540 - LTR9 LTR ERV1 0 612 1 7066 123 58 45 chrX 43024600 43024760 -133949380 - L1PBa LINE L1 -6703 160 4 9969 230 26 14 chrX 43024771 43024932 -133949208 - L1P LINE L1 -749 5397 5239 2658 112 44 5 chrX 43024932 43025344 -133948796 - MSTA LTR MaLR 0 428 1 9969 230 26 14 chrX 43025344 43027961 -133946179 - L1P LINE L1 -907 5239 2585 6142 154 13 5 chrX 43027974 43029769 -133944371 - L1MA2 LINE L1 0 6304 4496 4293 167 34 32 chrX 43029766 43030839 -133943301 + L1PB3 LINE L1 5078 6152 -2 * 39222 66 2 1 chrX 43031473 43037620 -133936520 + L1PA4 LINE L1 3 6155 0 224 277 0 0 chrX 43037756 43037803 -133936337 + polypurine Low_complexity Low_complexity 2 48 0 5820 45 1 0 chrX 43038596 43039302 -133934838 + L1PA3 LINE L1 5449 6155 0 8527 201 26 9 chrX 43039469 43039594 -133934546 - L1PA13 LINE L1 -4 6875 6754 4006 199 23 50 chrX 43039594 43040590 -133933550 - LTR5 LTR ERVK 0 969 1 8527 201 26 9 chrX 43040590 43043173 -133930967 - L1PA13 LINE L1 -125 6754 4140 4634 141 65 9 chrX 43043173 43045032 -133929108 - L1PA13 LINE L1 -4754 2109 1 * 5104 281 35 35 chrX 43045021 43047682 -133926458 - L1PA12 LINE L1 -4940 2641 244 8369 105 89 0 chrX 43048039 43049990 -133924150 + L1PA8 LINE L1 4124 6159 -13 26 50 0 0 chrX 43049990 43050030 -133924110 + AT_rich Low_complexity Low_complexity 1 40 0 40911 49 3 3 chrX 43050142 43056299 -133917841 - L1PA3 LINE L1 -3 6152 2 396 0 0 0 chrX 43056954 43056998 -133917142 + (CA)n Simple_repeat Simple_repeat 2 45 0 27 81 0 0 chrX 43057585 43057647 -133916493 + AT_rich Low_complexity Low_complexity 1 62 0 216 232 29 72 chrX 43057806 43057875 -133916265 - MIR SINE MIR -61 147 82 22 35 0 0 chrX 43058116 43058145 -133915995 + AT_rich Low_complexity Low_complexity 1 29 0 5844 111 20 0 chrX 43058379 43059549 -133914591 - L1PA15 LINE L1 -6 6159 4987 8090 216 15 16 chrX 43059553 43061632 -133912508 - L1PA15 LINE L1 -1282 4864 2788 22 35 0 0 chrX 43061937 43061966 -133912174 + AT_rich Low_complexity Low_complexity 1 29 0 306 349 0 0 chrX 43061982 43062091 -133912049 + (CACCAT)n Simple_repeat Simple_repeat 1 109 0 2501 112 0 3 chrX 43062376 43062732 -133911408 - THE1A LTR MaLR 0 355 1 1412 43 5 0 chrX 43062732 43062916 -133911224 - THE1A-int LTR MaLR 0 1580 1396 * 6130 107 10 9 chrX 43062904 43063827 -133910313 - THE1A-int LTR MaLR -656 924 1 2751 77 6 0 chrX 43063827 43064180 -133909960 - THE1A LTR MaLR 0 355 1 1660 194 20 20 chrX 43064574 43064977 -133909163 - MER65A LTR ERV1 0 445 43 229 88 0 0 chrX 43065011 43065045 -133909095 - MER65B LTR ERV1 -492 39 6 186 43 0 0 chrX 43065742 43065765 -133908375 + (A)n Simple_repeat Simple_repeat 1 23 0 271 258 112 11 chrX 43065790 43065879 -133908261 - L2 LINE L2 -2 3311 3214 335 374 37 11 chrX 43066028 43066215 -133907925 - L2 LINE L2 -193 3079 2888 825 255 53 0 chrX 43066419 43066666 -133907474 + MIR SINE MIR 2 261 -1 314 316 65 39 chrX 43066691 43066922 -133907218 - L2 LINE L2 -721 2593 2357 527 284 156 18 chrX 43067308 43067526 -133906614 + MIR SINE MIR 15 262 0 250 245 204 10 chrX 43067754 43067852 -133906288 + L2 LINE L2 3197 3313 0 7060 176 21 14 chrX 43067893 43069336 -133904804 + L1PA13 LINE L1 3858 5298 -865 2215 84 17 17 chrX 43069336 43069632 -133904508 + AluSg SINE Alu 1 296 -14 7060 176 21 14 chrX 43069632 43070501 -133903639 + L1PA13 LINE L1 5298 6160 -3 2680 120 20 29 chrX 43070552 43070886 -133903254 - MER4E LTR ERV1 0 779 444 4565 31 9 2 chrX 43070886 43071440 -133902700 - LTR6B LTR ERV1 0 558 1 2680 120 20 29 chrX 43071440 43071714 -133902426 - MER4E LTR ERV1 -335 444 1 937 237 11 0 chrX 43071944 43072130 -133902010 + MER5A DNA MER1_type 2 189 0 2417 93 29 44 chrX 43072435 43072598 -133901542 - MER4A LTR ERV1 0 664 500 2710 83 95 2 chrX 43072598 43073008 -133901132 + LTR7 LTR ERV1 1 448 -2 2417 93 29 44 chrX 43073008 43073254 -133900886 - MER4A LTR ERV1 -164 500 261 574 112 10 10 chrX 43073254 43073352 -133900788 - MER4A LTR ERV1 -566 98 1 5479 235 48 18 chrX 43073546 43075035 -133899105 + L1M3de LINE L1 2011 3454 -4111 180 0 0 0 chrX 43075035 43075055 -133899085 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5479 235 48 18 chrX 43075055 43076090 -133898050 + L1M3de LINE L1 3454 4456 -3109 2039 119 4 0 chrX 43076090 43076368 -133897772 - AluSg SINE Alu -19 291 13 5479 235 48 18 chrX 43076368 43077330 -133896810 + L1M3de LINE L1 4456 5595 -1970 11115 151 40 9 chrX 43077330 43079781 -133894359 - Tigger2 DNA MER2_type -124 2594 1 2563 206 39 69 chrX 43079782 43079861 -133894279 - L1 LINE L1 -3810 3755 3675 2072 155 119 13 chrX 43079861 43080248 -133893892 + MSTA LTR MaLR 1 428 0 2094 112 0 24 chrX 43080253 43080571 -133893569 - AluSc SINE Alu 0 309 1 2563 206 39 69 chrX 43080571 43081502 -133892638 - L1 LINE L1 -3894 3671 2771 1707 174 11 0 chrX 43081502 43081777 -133892363 - AluJo SINE Alu -30 282 5 2563 206 39 69 chrX 43081777 43081827 -133892313 - L1 LINE L1 -4794 2771 2721 937 199 22 9 chrX 43081828 43082054 -133892086 - L1 LINE L1 -4992 2497 2269 251 286 0 0 chrX 43082084 43082147 -133891993 - L1 LINE L1 -5525 1964 1902 1506 252 72 45 chrX 43082241 43082757 -133891383 - L1 LINE L1 -6494 995 466 406 179 26 0 chrX 43082774 43082852 -133891288 - L1MD2 LINE L1 -213 6146 6067 20849 178 19 21 chrX 43082861 43084695 -133889445 + L1PA14 LINE L1 829 2665 -4934 216 0 0 0 chrX 43084695 43084719 -133889421 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 20849 178 19 21 chrX 43084719 43088833 -133885307 + L1PA14 LINE L1 2665 7594 -5 1124 258 69 27 chrX 43088834 43089396 -133884744 - L1MDb LINE L1 -2309 4097 3512 212 57 0 29 chrX 43089402 43089437 -133884703 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 5203 28 29 0 chrX 43089437 43090086 -133884054 - L1PA3 LINE L1 -24 6131 5464 20387 43 3 0 chrX 43090088 43093404 -133880736 - L1PA5 LINE L1 -6 6148 2823 7228 126 2 0 chrX 43093408 43094522 -133879618 - L1P LINE L1 -5030 1116 1 4269 230 68 30 chrX 43094538 43095437 -133878703 - L1MDb LINE L1 -2898 3508 2645 1785 202 34 32 chrX 43095437 43095903 -133878237 - MLT1C LTR MaLR 0 467 1 4269 230 68 30 chrX 43095903 43096650 -133877490 - L1MDb LINE L1 -3761 2645 1928 2086 129 129 21 chrX 43096650 43097036 -133877104 - MSTA LTR MaLR 0 428 1 4269 230 68 30 chrX 43097036 43097703 -133876437 - L1MDb LINE L1 -4478 1928 1288 2051 123 0 36 chrX 43097703 43098012 -133876128 - AluSq SINE Alu -15 298 1 4269 230 68 30 chrX 43098012 43098494 -133875646 - L1MDb LINE L1 -5118 1288 588 234 0 0 0 chrX 43098512 43098538 -133875602 + (CCA)n Simple_repeat Simple_repeat 1 26 0 443 196 20 0 chrX 43098622 43098724 -133875416 - L1MDb LINE L1 -5374 1035 932 1566 271 59 22 chrX 43098833 43099343 -133874797 - L1MDb LINE L1 -5872 537 9 38098 64 25 2 chrX 43099579 43105567 -133868573 - L1PA3 LINE L1 -27 6128 2 10599 131 12 91 chrX 43105568 43107810 -133866330 - L1P LINE L1 -4071 2075 11 730 137 0 0 chrX 43107816 43107940 -133866200 - L1P LINE L1 -2660 3486 3363 * 19020 91 4 2 chrX 43107938 43111348 -133862792 + L1PA7 LINE L1 2490 5907 -247 7730 112 40 4 chrX 43111450 43112722 -133861418 - MER41-int LTR ERV1 -315 5631 4314 28928 118 9 57 chrX 43112730 43119074 -133855066 + L1PA7 LINE L1 12 6037 -117 25028 83 9 9 chrX 43119204 43122274 -133851866 - L1P LINE L1 -757 5389 2339 188 0 74 0 chrX 43122274 43122301 -133851839 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 25028 83 9 9 chrX 43122301 43124133 -133850007 - L1P LINE L1 -3807 2339 508 14680 66 19 2 chrX 43126024 43128853 -133845287 - L1PA6 LINE L1 -2 6152 3276 559 168 10 35 chrX 43128859 43129680 -133844460 + (TA)n Simple_repeat Simple_repeat 1 800 0 21 0 0 0 chrX 43130818 43130839 -133843301 + AT_rich Low_complexity Low_complexity 1 21 0 28959 52 3 1 chrX 43131547 43136213 -133837927 + L1PA4 LINE L1 1483 6155 0 224 277 0 0 chrX 43136349 43136396 -133837744 + polypurine Low_complexity Low_complexity 2 48 0 720 162 185 6 chrX 43136715 43136888 -133837252 - MSTA LTR MaLR -224 204 1 201 74 0 0 chrX 43136895 43136922 -133837218 + (TG)n Simple_repeat Simple_repeat 2 28 0 198 355 91 62 chrX 43137376 43137618 -133836522 + L2 LINE L2 3017 3265 -7 650 259 92 6 chrX 43138193 43138367 -133835773 + MIR SINE MIR 7 195 -67 361 288 0 42 chrX 43139015 43139133 -133835007 + MIR SINE MIR 101 213 -49 466 207 36 21 chrX 43141386 43141526 -133832614 + L1MCa LINE L1 134 275 -6151 3415 89 16 2 chrX 43141526 43142019 -133832121 + MER41A LTR ERV1 1 500 -54 5257 128 44 21 chrX 43142094 43144403 -133829737 + MER41A-int LTR ERV1 1 2943 -2072 3894 261 44 24 chrX 43194426 43197488 -133776652 - L1PA13 LINE L1 -3223 3574 1 7194 227 20 18 chrX 43197501 43197549 -133776591 - L1P LINE L1 -844 5302 5256 8464 46 8 0 chrX 43197549 43198510 -133775630 - LTR5 LTR ERVK 0 969 1 7194 227 20 18 chrX 43198510 43200609 -133773531 - L1P LINE L1 -890 5256 3156 393 290 43 79 chrX 43200651 43200954 -133773186 - LTR67 LTR ERVL 0 557 266 758 325 103 21 chrX 43201115 43201648 -133772492 + L2 LINE L2 1465 2041 -1273 316 363 13 32 chrX 43201648 43201805 -133772335 + L2 LINE L2 2664 2817 -497 566 336 134 36 chrX 43201881 43202189 -133771951 + L2 LINE L2 2824 3191 -122 384 22 0 0 chrX 43202189 43202234 -133771906 + (TG)n Simple_repeat Simple_repeat 2 46 0 566 336 134 36 chrX 43202234 43202371 -133771769 + L2 LINE L2 3191 3313 0 262 261 43 14 chrX 43202373 43202442 -133771698 + L2 LINE L2 3243 3313 0 248 389 30 15 chrX 43202635 43202766 -133771374 - L2 LINE L2 -356 2957 2825 1883 111 0 64 chrX 43202888 43203186 -133770954 + AluSx SINE Alu 1 279 -33 351 0 0 0 chrX 43203187 43203226 -133770914 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 428 241 19 28 chrX 43203963 43204071 -133770069 + MIR SINE MIR 156 262 0 1344 303 44 8 chrX 43204096 43204597 -133769543 - LTR33 LTR ERVL -2 519 1 1018 93 0 0 chrX 43204800 43204964 -133769176 - AluSg/x SINE Alu 0 318 155 525 347 126 18 chrX 43204975 43205373 -133768767 - L1PA13 LINE L1 -5314 1473 1033 3462 254 32 23 chrX 43205408 43206318 -133767822 - L1PA13 LINE L1 -5869 918 1 991 167 5 5 chrX 43206326 43206588 -133767552 - L1M1 LINE L1 -743 5403 5182 * 2527 230 119 36 chrX 43206577 43207468 -133766672 - L1M2b LINE L1 -5937 1272 13 861 234 60 47 chrX 43207473 43207609 -133766531 - Charlie4a DNA MER1_type -1505 456 323 865 62 108 0 chrX 43207609 43207738 -133766402 + L1PA11 LINE L1 6031 6173 -1 861 234 60 47 chrX 43207738 43207894 -133766246 - Charlie4a DNA MER1_type -1638 323 155 180 0 0 0 chrX 43207894 43207914 -133766226 + (TA)n Simple_repeat Simple_repeat 1 20 0 861 234 60 47 chrX 43207914 43208000 -133766140 - Charlie4a DNA MER1_type -1806 155 72 16736 193 67 25 chrX 43208000 43210613 -133763527 + L1PA11 LINE L1 1 2504 -3957 180 0 0 0 chrX 43210613 43210633 -133763507 + (CAA)n Simple_repeat Simple_repeat 2 21 0 16736 193 67 25 chrX 43210633 43212890 -133761250 + L1PA11 LINE L1 2504 5214 -1247 2560 111 10 10 chrX 43212889 43213287 -133760853 + THE1C-int LTR MaLR 1183 1580 0 * 2220 128 19 24 chrX 43213287 43213663 -133760477 + THE1C LTR MaLR 1 374 -1 5960 97 23 23 chrX 43213664 43214943 -133759197 + L1PA11 LINE L1 5210 6488 -1 247 235 73 0 chrX 43214943 43215011 -133759129 - Charlie4a DNA MER1_type -429 79 7 429 239 116 43 chrX 43215077 43215314 -133758826 - L1ME LINE L1 -585 5566 5309 180 258 0 76 chrX 43215457 43215523 -133758617 - L2 LINE L2 -643 2671 2611 192 179 0 0 chrX 43215739 43215778 -133758362 + (TG)n Simple_repeat Simple_repeat 2 40 0 460 282 175 29 chrX 43215879 43216085 -133758055 + MIR SINE MIR 22 257 -5 568 275 70 15 chrX 43216290 43216490 -133757650 - MIR SINE MIR 0 262 52 239 367 25 0 chrX 43216499 43216578 -133757562 - MIR SINE MIR -92 116 36 22 56 0 0 chrX 43216647 43216683 -133757457 + AT_rich Low_complexity Low_complexity 1 36 0 31 36 0 18 chrX 43217649 43217683 -133756457 + AT_rich Low_complexity Low_complexity 1 35 -20 2346 147 35 5 chrX 43217683 43218106 -133756034 - L1MA4 LINE L1 -6 6294 5859 31 36 0 18 chrX 43218106 43218127 -133756013 + AT_rich Low_complexity Low_complexity 35 55 0 213 232 54 18 chrX 43218361 43218473 -133755667 + (TA)n Simple_repeat Simple_repeat 2 117 0 378 119 15 0 chrX 43218476 43218543 -133755597 - MER116 DNA Mariner -4 76 9 206 332 24 87 chrX 43218697 43218905 -133755235 - L3b LINE CR1 -93 1490 1296 324 344 67 35 chrX 43220085 43220367 -133753773 - L2 LINE L2 -610 2704 2414 228 277 6 113 chrX 43220593 43220752 -133753388 + L2 LINE L2 2845 2986 -286 360 270 61 17 chrX 43220786 43220901 -133753239 - L1ME3A LINE L1 -10 6160 6041 1170 241 7 62 chrX 43220916 43221351 -133752789 - L1ME3A LINE L1 -203 5967 5557 1602 231 10 60 chrX 43221877 43222040 -133752100 + L1M4 LINE L1 8 178 -6364 2510 60 0 19 chrX 43222040 43222357 -133751783 + AluY SINE Alu 1 311 0 1602 231 10 60 chrX 43222357 43222696 -133751444 + L1M4 LINE L1 178 485 -6057 423 227 10 0 chrX 43222732 43222829 -133751311 + L1M4 LINE L1 486 583 -5959 252 219 9 48 chrX 43222837 43222942 -133751198 + L1M4 LINE L1 2287 2387 -4259 605 239 124 17 chrX 43223007 43223398 -133750742 + L1M4 LINE L1 2540 2986 -3658 561 246 28 17 chrX 43223391 43223570 -133750570 - L1M4 LINE L1 -6349 193 13 * 511 281 77 30 chrX 43223592 43223891 -133750249 - L1MC/D LINE L1 -1990 5818 5506 26 0 0 0 chrX 43223891 43223917 -133750223 + AT_rich Low_complexity Low_complexity 1 26 0 1724 132 8 8 chrX 43223976 43224234 -133749906 - AluSx SINE Alu -5 307 50 2768 122 52 23 chrX 43224235 43224711 -133749429 - LTR2B LTR ERV1 0 490 1 35938 192 11 7 chrX 43224723 43231493 -133742647 - HERVE LTR ERV1 -1017 6796 1 2916 104 32 56 chrX 43231493 43231995 -133742145 - LTR2B LTR ERV1 0 490 1 329 113 0 19 chrX 43231995 43232048 -133742092 - AluSx SINE Alu -250 52 1 2432 243 26 9 chrX 43232099 43232787 -133741353 - L1ME1 LINE L1 -1 6165 5466 423 189 81 0 chrX 43232793 43232904 -133741236 - L1MA7 LINE L1 -11 6280 6161 3692 184 37 16 chrX 43232905 43234273 -133739867 - L1MA7 LINE L1 -238 6053 4665 5449 212 104 49 chrX 43234296 43234520 -133739620 - L1MA5A LINE L1 0 6297 6087 2763 19 0 0 chrX 43234520 43234830 -133739310 - AluY SINE Alu -1 310 1 5449 212 104 49 chrX 43234830 43235876 -133738264 - L1MA5A LINE L1 -210 6087 5100 718 122 0 0 chrX 43235876 43235991 -133738149 - L1MA5A LINE L1 0 6297 6183 5449 212 104 49 chrX 43235991 43237417 -133736723 - L1MA5A LINE L1 -1197 5100 3428 3222 115 9 20 chrX 43237450 43237989 -133736151 - L1MA1 LINE L1 -1 6301 5769 18924 185 28 28 chrX 43237989 43240895 -133733245 - L1PA11 LINE L1 -9 6480 3574 1897 129 37 7 chrX 43240895 43241190 -133732950 - AluSq SINE Alu -9 304 1 18924 185 28 28 chrX 43241190 43241443 -133732697 - L1PA11 LINE L1 -2915 3574 3322 2072 123 4 0 chrX 43241443 43241762 -133732378 - AluSc SINE Alu 0 320 1 18924 185 28 28 chrX 43241762 43244642 -133729498 - L1PA11 LINE L1 -3167 3322 467 5150 223 52 10 chrX 43244672 43246122 -133728018 - L1 LINE L1 -984 5162 3652 4200 115 95 6 chrX 43246156 43247022 -133727118 - L1PBa LINE L1 -3974 2888 1898 39430 47 24 1 chrX 43247041 43253056 -133721084 - L1PA4 LINE L1 0 6155 1 607 259 0 0 chrX 43253056 43253214 -133720926 - L1PA13 LINE L1 -2263 4534 4377 238 176 0 0 chrX 43253314 43253365 -133720775 - L1PA13 LINE L1 -3055 3742 3692 329 119 0 17 chrX 43253365 43253458 -133720682 - AluS SINE Alu 0 301 231 9048 239 45 22 chrX 43253461 43255687 -133718453 - L1PA13 LINE L1 -3113 3684 1329 3221 26 0 5 chrX 43255687 43256071 -133718069 + L1PA2 LINE L1 5774 6155 0 9048 239 45 22 chrX 43256071 43257399 -133716741 - L1PA13 LINE L1 -5468 1329 33 1089 110 0 0 chrX 43257417 43257580 -133716560 + (TA)n Simple_repeat Simple_repeat 1 163 0 6444 79 2 2 chrX 43257598 43259295 -133714845 - L1PA7 LINE L1 -2 6467 4784 20570 117 22 17 chrX 43259298 43263171 -133710969 - L1PA7 LINE L1 -1848 4613 706 245 241 0 0 chrX 43263174 43263228 -133710912 - L1M2 LINE L1 -4197 2652 2599 229 218 26 0 chrX 43263228 43263306 -133710834 + (TA)n Simple_repeat Simple_repeat 2 81 0 238 213 0 64 chrX 43263310 43263404 -133710736 + L1MC4 LINE L1 6614 6701 -1341 301 161 129 0 chrX 43263430 43263492 -133710648 - L1M2 LINE L1 -6377 472 403 11030 228 61 4 chrX 43263493 43266423 -133707717 - L1 LINE L1 -3707 3141 43 301 184 0 0 chrX 43266417 43266466 -133707674 + L1M2 LINE L1 4 52 -6797 * 357 133 17 0 chrX 43266466 43266526 -133707614 - L1 LINE L1 -6787 62 2 279 343 42 17 chrX 43266697 43266986 -133707154 + L1PA12 LINE L1 8 303 -7278 4561 63 5 8 chrX 43269091 43269690 -133704450 + L1PA8 LINE L1 5576 6172 0 2295 125 14 3 chrX 43269692 43270053 -133704087 + L1PA8A LINE L1 5766 6130 -1 21 0 0 0 chrX 43270668 43270689 -133703451 + AT_rich Low_complexity Low_complexity 1 21 0 928 323 46 58 chrX 43270793 43271613 -133702527 - MER110-int LTR ERV1 -1685 2962 2153 3616 213 32 41 chrX 43271944 43272244 -133701896 - L1MB4 LINE L1 -3 6413 6112 2587 33 0 3 chrX 43272244 43272543 -133701597 - AluY SINE Alu -13 298 1 3616 213 32 41 chrX 43272543 43273005 -133701135 - L1MB4 LINE L1 -304 6112 5648 2002 128 3 7 chrX 43273005 43273303 -133700837 - AluSq SINE Alu -15 298 2 3616 213 32 41 chrX 43273303 43274214 -133699926 - L1MB4 LINE L1 -768 5648 4769 847 110 0 0 chrX 43274214 43274341 -133699799 - L1MA2 LINE L1 0 6304 6178 3616 213 32 41 chrX 43274341 43274618 -133699522 - L1MB4 LINE L1 -1647 4769 4491 3517 114 19 5 chrX 43274631 43275199 -133698941 - L1MA2 LINE L1 0 6304 5729 1579 47 0 0 chrX 43275214 43275406 -133698734 - L1PA3 LINE L1 -150 6005 5814 * 35279 45 2 1 chrX 43275400 43280603 -133693537 - L1PA3 LINE L1 0 6155 950 3264 281 48 13 chrX 43280627 43282006 -133692134 - L1MB4 LINE L1 -1880 4502 3076 1677 240 48 9 chrX 43282029 43282470 -133691670 - L1MB4 LINE L1 -4733 1651 1194 2045 170 3 15 chrX 43282877 43283218 -133690922 + MER1B DNA MER1_type 1 337 0 1383 210 15 15 chrX 43283361 43283633 -133690507 + AluJb SINE Alu 7 278 -34 245 50 0 25 chrX 43283634 43283674 -133690466 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1914 233 87 23 chrX 43284465 43284946 -133689194 - MLT2B1 LTR ERVL 0 520 9 1196 243 16 0 chrX 43285243 43285498 -133688642 - MER90 LTR ERV1 -9 566 308 219 36 0 0 chrX 43285945 43285973 -133688167 + (TAG)n Simple_repeat Simple_repeat 1 28 0 181 234 0 94 chrX 43286441 43286488 -133687652 - L2 LINE L2 -2 3311 3270 2655 140 17 0 chrX 43286488 43286909 -133687231 + MSTA LTR MaLR 1 428 0 181 234 0 94 chrX 43286909 43286925 -133687215 - L2 LINE L2 -43 3270 3254 2907 242 43 8 chrX 43288740 43289456 -133684684 + L1MCa LINE L1 158 898 -5666 1137 223 34 10 chrX 43289463 43289759 -133684381 + L1MCa LINE L1 780 1082 -4963 805 124 33 7 chrX 43289754 43289907 -133684233 - L1M1 LINE L1 -827 5476 5320 * 4390 179 60 21 chrX 43289914 43290332 -133683808 - L1PB4 LINE L1 -5 6151 5751 2128 133 16 37 chrX 43290332 43290715 -133683425 + THE1C LTR MaLR 1 375 0 4390 179 60 21 chrX 43290715 43290757 -133683383 - L1PB4 LINE L1 -405 5751 5712 2084 133 7 0 chrX 43290757 43291051 -133683089 - AluSx SINE Alu -16 296 1 4390 179 60 21 chrX 43291051 43292006 -133682134 - L1PB4 LINE L1 -444 5712 4677 4295 236 107 18 chrX 43292004 43293162 -133680978 + L1MCa LINE L1 1062 2115 -4449 * 411 21 0 0 chrX 43293162 43293210 -133680930 + (TG)n Simple_repeat Simple_repeat 1 48 0 4295 236 107 18 chrX 43293210 43294118 -133680022 + L1MCa LINE L1 2115 3316 -3248 5292 176 43 3 chrX 43294124 43295702 -133678438 + L1PB4 LINE L1 4503 6149 -7 801 236 111 16 chrX 43295689 43296066 -133678074 + L1MCa LINE L1 3302 3714 -2850 * 21 36 0 0 chrX 43296067 43296095 -133678045 + AT_rich Low_complexity Low_complexity 1 28 0 866 257 4 8 chrX 43296257 43296502 -133677638 + L1MCa LINE L1 4105 4348 -2216 272 216 0 0 chrX 43296516 43296567 -133677573 + FRAM/FAM SINE Alu 26 76 -90 813 199 84 0 chrX 43296590 43296756 -133677384 - AluJb SINE Alu -3 309 130 198 0 0 0 chrX 43296770 43296792 -133677348 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1764 38 5 0 chrX 43296792 43297004 -133677136 - L1PA3 LINE L1 -18 6137 5925 723 226 88 11 chrX 43297008 43297189 -133676951 + L1MCa LINE L1 4359 4553 -2011 2030 177 44 25 chrX 43297192 43297599 -133676541 + MSTB1 LTR MaLR 18 432 0 2823 185 15 15 chrX 43297646 43298236 -133675904 + L1M2 LINE L1 3797 4386 -1760 257 139 0 0 chrX 43298238 43298274 -133675866 + L1M2 LINE L1 5609 5644 -668 10320 156 24 14 chrX 43298277 43300094 -133674046 + Tigger1 DNA MER2_type 2 1835 -583 550 153 15 23 chrX 43300095 43300226 -133673914 - L1MB8 LINE L1 0 6178 6049 * 5001 159 9 13 chrX 43300222 43301986 -133672154 - L1PA16 LINE L1 -6 6160 4379 1431 65 0 0 chrX 43302008 43302193 -133671947 - L1PA5 LINE L1 0 6154 5970 528 170 128 0 chrX 43302193 43302287 -133671853 - MER21B LTR ERV1 -547 316 211 33359 96 10 10 chrX 43302287 43307111 -133667029 - L1P LINE L1 -1313 4833 11 4336 236 55 45 chrX 43307122 43308371 -133665769 - L1M4 LINE L1 -1651 4993 3758 1721 203 7 0 chrX 43308371 43308667 -133665473 + AluJb SINE Alu 1 298 -14 4336 236 55 45 chrX 43308667 43309040 -133665100 - L1M4 LINE L1 -2886 3758 3390 3401 62 20 0 chrX 43309040 43309489 -133664651 - L1PA10 LINE L1 -4 6164 5707 4336 236 55 45 chrX 43309489 43310652 -133663488 - L1M4 LINE L1 -3254 3390 2240 7016 58 2 2 chrX 43310652 43311744 -133662396 + L1PA7 LINE L1 5058 6149 -5 4336 236 55 45 chrX 43311744 43312187 -133661953 - L1M4 LINE L1 -4404 2240 1803 2014 119 53 0 chrX 43312187 43312472 -133661668 + AluSx SINE Alu 1 300 -12 4336 236 55 45 chrX 43312472 43312809 -133661331 - L1M4 LINE L1 -4841 1803 842 198 0 0 0 chrX 43312811 43312833 -133661307 + (T)n Simple_repeat Simple_repeat 1 22 0 225 204 0 0 chrX 43312846 43312890 -133661250 + A-rich Low_complexity Low_complexity 1 44 0 336 146 0 101 chrX 43312965 43313054 -133661086 - L1P LINE L1 -3449 2697 2618 * 1664 267 39 12 chrX 43313051 43313568 -133660572 - L1P3 LINE L1 -4861 1014 484 302 301 75 64 chrX 43313613 43313786 -133660354 + MIR3 SINE MIR 34 208 0 204 346 66 37 chrX 43314105 43314241 -133659899 + MIR3 SINE MIR 16 155 -53 237 33 0 0 chrX 43314358 43314388 -133659752 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 703 204 0 0 chrX 43314389 43314502 -133659638 + FLAM_A SINE Alu 1 113 -29 21 36 0 0 chrX 43314533 43314561 -133659579 + AT_rich Low_complexity Low_complexity 1 28 0 799 283 11 2 chrX 43314975 43315203 -133658937 - MIR SINE MIR 0 262 34 1235 120 70 33 chrX 43315822 43315891 -133658249 - L1MA9 LINE L1 -5 6307 6242 297 0 0 0 chrX 43315891 43315924 -133658216 + (TA)n Simple_repeat Simple_repeat 1 33 0 1235 120 70 33 chrX 43315924 43316095 -133658045 - L1MA9 LINE L1 -70 6242 6058 696 185 0 48 chrX 43316250 43316396 -133657744 + FLAM_C SINE Alu 1 139 -4 286 226 16 16 chrX 43316557 43316619 -133657521 - L2 LINE L2 -4 3268 3207 434 249 195 78 chrX 43317033 43317076 -133657064 + MIR SINE MIR 34 71 -191 1651 162 87 29 chrX 43317076 43317421 -133656719 - MLT1A1 LTR MaLR 0 365 1 434 249 195 78 chrX 43317421 43317582 -133656558 + MIR SINE MIR 71 262 0 233 331 71 18 chrX 43317707 43317860 -133656280 - MIR SINE MIR -15 247 83 2172 102 7 0 chrX 43318672 43318956 -133655184 - AluSg SINE Alu -24 286 1 2540 62 0 0 chrX 43320161 43320467 -133653673 + AluY SINE Alu 1 306 -5 210 205 0 0 chrX 43321149 43321188 -133652952 + L2 LINE L2 3267 3305 -8 362 291 29 10 chrX 43321539 43321642 -133652498 + MIR SINE MIR 38 142 -120 23 0 0 0 chrX 43321832 43321855 -133652285 + AT_rich Low_complexity Low_complexity 1 23 0 887 135 0 0 chrX 43322019 43322145 -133651995 - AluJb SINE Alu -186 126 1 587 21 63 11 chrX 43322492 43322587 -133651553 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 351 165 372 8 chrX 43323082 43323203 -133650937 - MIR SINE MIR 0 262 98 219 286 61 10 chrX 43323223 43323321 -133650819 + MIR SINE MIR 160 262 0 629 282 34 15 chrX 43323418 43323624 -133650516 + L2 LINE L2 3104 3313 0 424 311 0 0 chrX 43323615 43323721 -133650419 - MIR SINE MIR -156 106 1 * 484 271 57 26 chrX 43325040 43325232 -133648908 + MIR SINE MIR 65 262 0 1590 282 102 24 chrX 43325417 43325997 -133648143 + L2 LINE L2 2377 3060 -253 2447 96 3 0 chrX 43325997 43326309 -133647831 - AluSq SINE Alu 0 313 1 1590 282 102 24 chrX 43326309 43326531 -133647609 + L2 LINE L2 3060 3263 -50 1705 172 27 20 chrX 43326643 43326939 -133647201 + AluJb SINE Alu 1 298 -14 397 126 184 0 chrX 43326960 43327047 -133647093 + L1MA9 LINE L1 6209 6311 -1 13294 162 62 19 chrX 43328406 43334980 -133639160 + L1PA3 LINE L1 3 6881 0 9117 190 43 18 chrX 43334988 43335214 -133638926 + L1PA15 LINE L1 2849 3068 -3097 8518 33 3 0 chrX 43335214 43337022 -133637118 + L1PA3 LINE L1 4348 6155 0 9117 190 43 18 chrX 43337022 43340033 -133634107 + L1PA15 LINE L1 3068 6165 0 189 0 0 0 chrX 43340054 43340075 -133634065 + (A)n Simple_repeat Simple_repeat 1 21 0 301 276 53 26 chrX 43340075 43340227 -133633913 - L1ME LINE L1 -555 5566 5411 1595 175 62 10 chrX 43340232 43340523 -133633617 - AluSx SINE Alu -6 306 1 22 35 0 0 chrX 43340700 43340729 -133633411 + AT_rich Low_complexity Low_complexity 1 29 0 321 286 70 29 chrX 43340729 43340900 -133633240 - L1ME LINE L1 -1234 4912 4735 196 374 33 11 chrX 43341242 43341333 -133632807 + L2 LINE L2 2925 3017 -255 3360 286 75 15 chrX 43341441 43342810 -133631330 + L2 LINE L2 1850 3313 0 279 200 0 0 chrX 43343084 43343134 -133631006 + L2 LINE L2 3262 3311 -2 285 316 64 41 chrX 43343142 43343313 -133630827 + L3 LINE CR1 787 961 -616 2809 176 41 40 chrX 43343313 43343724 -133630416 + L1MB5 LINE L1 4869 5278 -896 2302 86 0 16 chrX 43343724 43344037 -133630103 + AluSg SINE Alu 1 308 -2 2176 106 0 0 chrX 43344045 43344349 -133629791 - AluSx SINE Alu 0 304 1 2809 176 41 40 chrX 43344349 43344940 -133629200 + L1MB5 LINE L1 5284 5874 -300 542 68 0 0 chrX 43344940 43345013 -133629127 + L1PA5 LINE L1 6078 6151 -3 6838 69 8 1 chrX 43345025 43345982 -133628158 + L1PA7 LINE L1 5192 6154 0 216 0 0 0 chrX 43346712 43346736 -133627404 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1260 214 3 41 chrX 43346741 43346954 -133627186 + L1MB5 LINE L1 5861 6060 -114 2144 129 3 0 chrX 43346954 43347248 -133626892 + AluSx SINE Alu 2 296 -16 1260 214 3 41 chrX 43347248 43347352 -133626788 + L1MB5 LINE L1 6060 6166 -8 2289 120 28 11 chrX 43347805 43348163 -133625977 - THE1B LTR MaLR 0 364 1 309 321 37 30 chrX 43348288 43348422 -133625718 - L2 LINE L2 -627 2687 2553 232 295 90 26 chrX 43348478 43348605 -133625535 - L2 LINE L2 -1009 2305 2165 1638 126 4 0 chrX 43348605 43348852 -133625288 + L1PA16 LINE L1 5910 6157 -9 232 295 90 26 chrX 43348852 43348880 -133625260 - L2 LINE L2 -1149 2165 2140 351 219 31 21 chrX 43348955 43349051 -133625089 + Charlie8 DNA MER1_type 85 181 -2236 188 289 118 26 chrX 43349689 43349765 -133624375 + L2 LINE L2 3197 3279 -34 411 271 52 0 chrX 43350011 43350107 -133624033 - MLT1F1 LTR MaLR -164 403 303 1473 308 43 66 chrX 43350197 43351152 -133622988 - L2 LINE L2 -229 3043 2107 365 340 29 30 chrX 43351226 43351405 -133622735 - L1 LINE L1 -3286 2860 2676 217 338 117 7 chrX 43352039 43352184 -133621956 - MIR SINE MIR -27 235 75 817 198 17 25 chrX 43352213 43352450 -133621690 - Charlie1a DNA MER1_type 0 1455 1221 759 224 45 0 chrX 43352468 43352624 -133621516 + FRAM SINE Alu 1 160 -16 742 205 0 0 chrX 43352624 43352780 -133621360 - Charlie1a DNA MER1_type -250 1205 1050 435 70 0 0 chrX 43352781 43352838 -133621302 - L1PA5 LINE L1 -2021 4125 4069 10087 35 0 0 chrX 43352838 43354871 -133619269 + L1PA5 LINE L1 4142 6151 -3 242 245 71 10 chrX 43354885 43354912 -133619228 - Charlie1a DNA MER1_type -1700 1061 1037 2609 150 32 26 chrX 43354912 43355418 -133618722 - L1PA16 LINE L1 -2 6164 5656 242 245 71 10 chrX 43355418 43355488 -133618652 - Charlie1a DNA MER1_type -1724 1037 958 2449 82 0 0 chrX 43355504 43355835 -133618305 - L1PA13 LINE L1 -19 6144 5814 2397 76 21 0 chrX 43355835 43356157 -133617983 - L1PA4 LINE L1 0 6155 5821 3713 67 0 2 chrX 43356171 43356651 -133617489 + L1PA5 LINE L1 5673 6151 -3 28167 59 1 1 chrX 43356665 43362174 -133611966 - L1PA4 LINE L1 -520 5635 1 3372 161 11 8 chrX 43362173 43363359 -133610781 - L1PA13 LINE L1 -336 5832 4643 * 247 384 43 85 chrX 43363454 43363712 -133610428 - L2 LINE L2 -6 3266 3020 288 220 22 22 chrX 43363747 43363838 -133610302 - MER112 DNA MER1_type -85 175 85 198 239 45 34 chrX 43363870 43363958 -133610182 - L3 LINE CR1 -734 843 755 264 130 0 0 chrX 43363959 43364005 -133610135 + (T)n Simple_repeat Simple_repeat 1 46 0 3232 16 0 0 chrX 43364008 43364394 -133609746 - L1HS LINE L1 0 6155 5770 350 0 0 0 chrX 43364390 43364432 -133609708 + L1P2 LINE L1 5711 5752 -402 * 434 222 10 0 chrX 43364427 43364526 -133609614 - L1P LINE L1 -1489 4657 4558 368 194 0 0 chrX 43364536 43364603 -133609537 + L1PA12 LINE L1 967 1033 -6548 3027 230 99 23 chrX 43364603 43364843 -133609297 - Charlie1a DNA MER1_type -1783 978 758 1563 202 28 0 chrX 43364843 43365130 -133609010 + AluJo SINE Alu 3 297 -15 3027 230 99 23 chrX 43365130 43365797 -133608343 - Charlie1a DNA MER1_type -2003 758 2 2016 136 7 23 chrX 43366375 43366685 -133607455 - AluSx SINE Alu -7 305 1 189 236 36 18 chrX 43366930 43366985 -133607155 - MIR SINE MIR -11 251 196 1597 192 159 0 chrX 43367431 43367759 -133606381 + L1 LINE L1 4245 4672 -1474 2984 51 3 0 chrX 43367759 43368129 -133606011 - L1PA5 LINE L1 -4 6150 5780 1597 192 159 0 chrX 43368129 43368273 -133605867 + L1 LINE L1 4672 4792 -1354 11687 164 102 7 chrX 43368281 43370636 -133603504 + L1MA3 LINE L1 778 3355 -4210 5851 58 1 0 chrX 43370636 43371371 -133602769 - L1PA5 LINE L1 -6 6148 5413 29064 65 4 1 chrX 43371371 43377466 -133596674 - L1PA4 LINE L1 -4 6151 41 34973 102 10 3 chrX 43377467 43382860 -133591280 - L1PA5 LINE L1 -727 5427 2 1310 153 51 0 chrX 43382862 43383137 -133591003 + L1MA3 LINE L1 3347 3635 -3930 40811 51 2 2 chrX 43383137 43389287 -133584853 + L1PA3 LINE L1 1 6152 -3 11612 200 21 13 chrX 43389303 43393329 -133580811 + L1MA3 LINE L1 3619 7674 -50 34306 103 9 9 chrX 43393343 43399493 -133574647 + L1PA6 LINE L1 2 6147 -7 40 49 0 0 chrX 43399595 43399656 -133574484 + AT_rich Low_complexity Low_complexity 1 61 0 4511 195 42 21 chrX 43399656 43401030 -133573110 + L1MA10 LINE L1 4908 6319 -15 200 98 0 24 chrX 43401507 43401548 -133572592 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6742 161 11 6 chrX 43401548 43403967 -133570173 - L1MA1 LINE L1 -5 7716 5286 6670 216 26 9 chrX 43404685 43405121 -133569019 - L1MA1 LINE L1 -2259 5306 4879 2463 107 28 6 chrX 43405121 43405477 -133568663 - THE1B LTR MaLR 0 364 1 10390 115 17 35 chrX 43405479 43407085 -133567055 - THE1B-int LTR MaLR -2 1578 1 2287 140 22 0 chrX 43407085 43407441 -133566699 - THE1B LTR MaLR 0 364 1 6670 216 26 9 chrX 43407441 43408733 -133565407 - L1MA1 LINE L1 -2685 4880 3544 911 152 66 0 chrX 43408736 43408887 -133565253 + AluSg/x SINE Alu 134 294 -18 12246 165 27 49 chrX 43408897 43412145 -133561995 - L1MA1 LINE L1 -4013 3552 15 240 256 67 56 chrX 43412401 43412491 -133561649 + MIR SINE MIR 5 95 -167 2353 106 6 3 chrX 43412521 43412879 -133561261 - AluSq SINE Alu 0 359 1 2119 198 86 42 chrX 43412955 43413596 -133560544 - LTR1B LTR ERV1 -157 669 1 900 198 4 79 chrX 43413655 43413908 -133560232 + MLT1B LTR MaLR 1 234 -156 507 146 22 0 chrX 43413909 43413998 -133560142 + MLT1B LTR MaLR 377 467 0 501 299 111 0 chrX 43414000 43414144 -133559996 - MIR SINE MIR -101 161 2 2375 112 0 0 chrX 43414797 43415141 -133558999 + AluSx SINE Alu 1 344 0 1381 329 48 28 chrX 43415141 43415627 -133558513 + L2 LINE L2 2275 2783 -489 1078 229 122 4 chrX 43415627 43415770 -133558370 - AluJo SINE Alu -9 293 168 396 0 0 0 chrX 43415770 43415814 -133558326 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1078 229 122 4 chrX 43415814 43415932 -133558208 - AluJo SINE Alu -134 168 1 1381 329 48 28 chrX 43415932 43416215 -133557925 + L2 LINE L2 2783 3059 -213 240 35 0 0 chrX 43416655 43416684 -133557456 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2159 107 0 21 chrX 43416686 43416975 -133557165 - AluSc SINE Alu -26 283 1 23 33 0 0 chrX 43418320 43418350 -133555790 + AT_rich Low_complexity Low_complexity 1 30 0 1274 112 11 0 chrX 43418946 43419124 -133555016 + AluSg/x SINE Alu 121 300 -12 222 144 10 196 chrX 43419193 43419290 -133554850 + MIR SINE MIR 133 211 -51 1026 178 0 0 chrX 43419515 43419684 -133554456 + MER5A DNA MER1_type 18 186 -3 2306 99 3 10 chrX 43419730 43420044 -133554096 - AluSx SINE Alu 0 312 1 7468 115 97 85 chrX 43420696 43422373 -133551767 - pTR5 LTR ERV1 0 2438 743 763 201 116 0 chrX 43422430 43422594 -133551546 + MIR SINE MIR 80 262 0 263 272 97 78 chrX 43422799 43423005 -133551135 - L2 LINE L2 -8 3305 3096 822 143 0 8 chrX 43423193 43423326 -133550814 - FLAM_C SINE Alu 0 133 2 237 268 24 49 chrX 43423400 43423482 -133550658 - L2 LINE L2 -649 2665 2586 324 274 62 0 chrX 43423590 43423703 -133550437 - L1ME4a LINE L1 -2 6119 6000 470 242 28 60 chrX 43423866 43423997 -133550143 - L1ME4a LINE L1 -193 5928 5807 1473 176 12 112 chrX 43423997 43424400 -133549740 - MLT1A1 LTR MaLR -2 363 1 470 242 28 60 chrX 43424400 43424516 -133549624 - L1ME4a LINE L1 -314 5807 5689 364 315 142 5 chrX 43424668 43424865 -133549275 + L3 LINE CR1 1148 1371 -206 * 1049 198 26 30 chrX 43424863 43425095 -133549045 - MIR SINE MIR 0 262 32 295 287 53 127 chrX 43425095 43425339 -133548801 - L2 LINE L2 -2 3270 3045 272 229 43 0 chrX 43425348 43425418 -133548722 + MER117 DNA MER1_type 88 160 -37 724 216 49 5 chrX 43425526 43425730 -133548410 + MER113 DNA MER1_type? 5 217 -304 187 286 0 0 chrX 43425786 43425835 -133548305 + L3 LINE CR1 1524 1572 -5 2187 99 24 0 chrX 43426607 43426899 -133547241 - AluSg SINE Alu -11 299 1 396 0 0 0 chrX 43427131 43427175 -133546965 + (CA)n Simple_repeat Simple_repeat 2 45 0 396 318 71 34 chrX 43427507 43427580 -133546560 - MIR SINE MIR 0 262 193 467 188 236 35 chrX 43427580 43427724 -133546416 - MER69A DNA AcHobo -4 173 1 396 318 71 34 chrX 43427724 43427889 -133546251 - MIR SINE MIR -69 193 15 230 222 0 0 chrX 43428448 43428493 -133545647 + GA-rich Low_complexity Low_complexity 3 47 0 256 296 49 0 chrX 43429057 43429138 -133545002 + L2 LINE L2 3188 3272 0 671 208 58 0 chrX 43429853 43430007 -133544133 + MIR SINE MIR 100 262 0 186 311 90 112 chrX 43430063 43430330 -133543810 - L2 LINE L2 -102 3170 2910 196 297 173 32 chrX 43430424 43430609 -133543531 - L2 LINE L2 -849 2465 2255 * 384 264 0 88 chrX 43430607 43430766 -133543374 + MIR SINE MIR 118 262 0 200 242 30 15 chrX 43430768 43430834 -133543306 + CT-rich Low_complexity Low_complexity 4 70 0 221 297 14 0 chrX 43431554 43431628 -133542512 + CT-rich Low_complexity Low_complexity 2 76 0 200 316 214 0 chrX 43433539 43433656 -133540484 + MIR SINE MIR 48 189 -73 2352 87 7 0 chrX 43434673 43434971 -133539169 - AluSp SINE Alu -13 300 1 22 35 0 0 chrX 43435147 43435176 -133538964 + AT_rich Low_complexity Low_complexity 1 29 0 580 196 52 26 chrX 43435497 43435650 -133538490 + MIR SINE MIR 60 216 -46 297 51 0 0 chrX 43436098 43436137 -133538003 + (TG)n Simple_repeat Simple_repeat 1 39 0 198 0 0 0 chrX 43436219 43436241 -133537899 + (TA)n Simple_repeat Simple_repeat 2 23 0 279 211 126 0 chrX 43436249 43436344 -133537796 - Charlie8 DNA MER1_type -2261 156 50 463 142 55 102 chrX 43436367 43436494 -133537646 + MLT1B LTR MaLR 5 125 -265 21 57 0 0 chrX 43436494 43436529 -133537611 + AT_rich Low_complexity Low_complexity 1 35 0 279 270 27 9 chrX 43436538 43436649 -133537491 - MIR SINE MIR -1 261 149 282 29 0 0 chrX 43436656 43436691 -133537449 + (TG)n Simple_repeat Simple_repeat 2 36 0 484 270 30 44 chrX 43436696 43436957 -133537183 - L1MC4a LINE L1 -297 5824 5688 1253 219 42 70 chrX 43436962 43437363 -133536777 - MLT1B LTR MaLR 0 390 1 463 233 106 87 chrX 43437382 43437453 -133536687 + MER102b DNA MER1_type 61 129 -1299 2136 116 14 0 chrX 43437453 43437747 -133536393 + AluSq SINE Alu 1 298 -15 463 233 106 87 chrX 43437747 43437950 -133536190 + MER102b DNA MER1_type 129 340 -1 289 316 0 0 chrX 43438085 43438164 -133535976 - L2 LINE L2 -2 3270 3192 496 256 53 53 chrX 43438516 43438743 -133535397 - Charlie8 DNA MER1_type -2180 237 11 601 287 29 29 chrX 43439992 43440166 -133533974 + MIR SINE MIR 20 193 -69 477 107 27 0 chrX 43440189 43440264 -133533876 + L1PA10 LINE L1 6091 6167 -1 320 231 109 32 chrX 43440268 43440424 -133533716 + L1MC5 LINE L1 7741 7908 -53 1972 152 7 3 chrX 43440433 43440723 -133533417 - AluSx SINE Alu -21 291 1 227 366 0 50 chrX 43440897 43440998 -133533142 - MIR SINE MIR -81 127 32 300 315 89 4 chrX 43441163 43441309 -133532831 - MIR SINE MIR -55 207 39 402 208 48 64 chrX 43441722 43441847 -133532293 - MIR SINE MIR -56 206 84 2211 108 10 7 chrX 43442785 43443090 -133531050 - AluSg SINE Alu -4 306 1 661 174 19 193 chrX 43443347 43443469 -133530671 + MIR SINE MIR 39 90 -172 1594 160 91 0 chrX 43443469 43443744 -133530396 - AluJo SINE Alu -12 300 1 661 174 19 193 chrX 43443744 43443891 -133530249 + MIR SINE MIR 90 261 -1 30 0 0 0 chrX 43445203 43445233 -133528907 + AT_rich Low_complexity Low_complexity 1 30 0 758 281 28 14 chrX 43445671 43445888 -133528252 - MIR SINE MIR -29 233 14 255 283 66 71 chrX 43445912 43446124 -133528016 - L2 LINE L2 -729 2585 2375 214 217 100 17 chrX 43446220 43446280 -133527860 - MIR SINE MIR -1 261 197 4324 128 88 7 chrX 43446280 43447364 -133526776 - Tigger3(Golem) DNA MER2_type 0 3029 2033 1681 57 0 0 chrX 43447364 43447576 -133526564 + L1PA5 LINE L1 5941 6152 -2 4324 128 88 7 chrX 43447576 43447633 -133526507 - Tigger3(Golem) DNA MER2_type -996 2033 1 283 311 34 25 chrX 43447633 43447752 -133526388 - MIR SINE MIR -64 198 79 490 220 0 28 chrX 43448212 43448321 -133525819 - L2 LINE L2 -23 3290 3185 2120 151 72 3 chrX 43448382 43448759 -133525381 - MER57A LTR ERV1 0 403 1 244 314 0 12 chrX 43449863 43449910 -133524230 - MIR SINE MIR -57 205 158 1819 159 25 91 chrX 43449910 43449996 -133524144 - MLT2D LTR ERVL 0 414 324 180 0 0 0 chrX 43449996 43450016 -133524124 + (GA)n Simple_repeat Simple_repeat 1 20 0 1819 159 25 91 chrX 43450016 43450370 -133523770 - MLT2D LTR ERVL -90 324 3 244 314 0 12 chrX 43450370 43450408 -133523732 - MIR SINE MIR -104 158 121 2234 106 0 10 chrX 43450681 43451017 -133523123 - AluSg SINE Alu 0 310 1 6969 121 11 10 chrX 43451021 43451273 -133522867 - L1MA2 LINE L1 0 6304 6054 2144 115 0 7 chrX 43451273 43451569 -133522571 - AluSx SINE Alu -16 296 3 6969 121 11 10 chrX 43451569 43453007 -133521133 - L1MA2 LINE L1 -250 6054 4611 1647 166 0 25 chrX 43453007 43453290 -133520850 - AluSx SINE Alu -2 310 35 308 156 0 0 chrX 43453325 43453370 -133520770 - AluSx SINE Alu -252 47 3 311 154 0 0 chrX 43453372 43453437 -133520703 - L1MA2 LINE L1 -1527 4619 4555 1662 210 115 73 chrX 43453514 43454267 -133519873 - LTR1B LTR ERV1 -37 983 1 8000 169 28 69 chrX 43454267 43455962 -133518178 - L1MA2 LINE L1 -1585 4561 2963 2184 118 3 0 chrX 43455962 43456258 -133517882 - AluSp SINE Alu -15 298 2 8000 169 28 69 chrX 43456258 43456617 -133517523 - L1MA2 LINE L1 -3183 2963 2591 3696 127 14 0 chrX 43456622 43457187 -133516953 - L1PA16 LINE L1 -10 6156 5584 2184 87 0 11 chrX 43457525 43457831 -133516309 - AluY SINE Alu 0 303 1 245 232 49 0 chrX 43458487 43458569 -133515571 - L1MC4 LINE L1 -164 7878 7793 321 149 68 0 chrX 43458962 43459036 -133515104 + MER113 DNA MER1_type? 4 82 -439 189 0 0 0 chrX 43459052 43459073 -133515067 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1297 202 90 43 chrX 43459124 43459569 -133514571 - MLT1C LTR MaLR -1 466 1 21 0 0 0 chrX 43459613 43459634 -133514506 + AT_rich Low_complexity Low_complexity 1 21 0 202 250 0 0 chrX 43459753 43459797 -133514343 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 0 0 0 chrX 43461012 43461035 -133513105 + AT_rich Low_complexity Low_complexity 1 23 0 262 152 0 0 chrX 43461910 43461980 -133512160 - AluSx SINE Alu 0 311 242 1538 111 0 0 chrX 43461981 43462179 -133511961 - AluSx SINE Alu -114 198 1 476 145 0 0 chrX 43462755 43462824 -133511316 - AluJ/FRAM SINE Alu -25 287 219 247 167 22 44 chrX 43462922 43463012 -133511128 - L1MC5 LINE L1 -261 7700 7613 46 120 0 0 chrX 43463477 43463768 -133510372 + AT_rich Low_complexity Low_complexity 1 291 0 330 339 16 8 chrX 43463885 43464006 -133510134 + L2 LINE L2 2960 3081 -191 23 68 0 0 chrX 43465257 43465301 -133508839 + AT_rich Low_complexity Low_complexity 1 44 0 187 282 81 96 chrX 43465564 43465773 -133508367 + L2 LINE L2 3107 3312 -1 23 0 0 0 chrX 43465817 43465840 -133508300 + AT_rich Low_complexity Low_complexity 1 23 0 210 296 0 0 chrX 43466003 43466057 -133508083 + L3 LINE CR1 1323 1376 -201 205 152 0 43 chrX 43466258 43466304 -133507836 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2733 71 14 0 chrX 43466484 43466834 -133507306 - THE1A LTR MaLR 0 355 1 229 244 47 58 chrX 43466834 43466920 -133507220 + Charlie7 DNA MER1_type 6 90 -2522 4332 159 15 18 chrX 43466933 43467775 -133506365 - L1MA8 LINE L1 -10 6281 5442 198 0 0 0 chrX 43468262 43468284 -133505856 + (CA)n Simple_repeat Simple_repeat 2 23 0 240 35 0 0 chrX 43468776 43468805 -133505335 + (TG)n Simple_repeat Simple_repeat 2 30 0 306 0 0 0 chrX 43469604 43469638 -133504502 + (CA)n Simple_repeat Simple_repeat 2 35 0 390 100 0 0 chrX 43469638 43469698 -133504442 + (GA)n Simple_repeat Simple_repeat 1 60 0 452 298 136 37 chrX 43470080 43470174 -133503966 - MER102b DNA MER1_type -1129 299 216 1306 171 78 84 chrX 43470174 43470519 -133503621 - MER2 DNA MER2_type -1 343 1 452 298 136 37 chrX 43470519 43470696 -133503444 - MER102b DNA MER1_type -1212 216 1 368 298 29 0 chrX 43470990 43471094 -133503046 + MIR3 SINE MIR 60 166 -42 2014 133 7 7 chrX 43471474 43471767 -133502373 - AluSx SINE Alu -19 293 1 549 234 22 122 chrX 43471985 43472207 -133501933 + L2 LINE L2 2651 2850 -464 185 382 40 0 chrX 43472205 43472281 -133501859 + L2 LINE L2 3005 3083 -230 * 23 33 0 0 chrX 43472337 43472367 -133501773 + AT_rich Low_complexity Low_complexity 1 30 0 2839 113 14 33 chrX 43472439 43472927 -133501213 - L1MA2 LINE L1 -7 6297 5819 3339 140 34 4 chrX 43473137 43474039 -133500101 - L1MA2 LINE L1 -506 5799 4875 1462 170 91 9 chrX 43674043 43674384 -133299756 + LTR49-int LTR ERV1 4044 4412 -1919 4509 89 8 0 chrX 43674384 43675010 -133299130 - L1PA8 LINE L1 -1 6486 5856 11631 129 8 9 chrX 43675010 43677010 -133297130 - L1PA8 LINE L1 -1080 5381 3385 * 40016 42 22 2 chrX 43677000 43677011 -133297129 - L1PA2 LINE L1 -1 6154 6145 2658 56 6 0 chrX 43677011 43677348 -133296792 - L1PA4 LINE L1 -3 6152 5814 40016 42 22 2 chrX 43677348 43683369 -133290771 - L1PA2 LINE L1 -10 6145 1 39709 60 4 1 chrX 43683377 43689188 -133284952 - L1PA4 LINE L1 -326 5829 1 10958 147 23 49 chrX 43689189 43692145 -133281995 - L1PA8 LINE L1 -3063 3398 427 486 218 0 20 chrX 43692133 43692234 -133281906 - L1PA8 LINE L1 -6357 104 6 * 264 91 23 0 chrX 43692249 43692293 -133281847 - MLT1D LTR MaLR -185 320 276 2456 160 29 12 chrX 43692332 43692819 -133281321 + LTR49-int LTR ERV1 4402 4896 -1435 39 50 0 0 chrX 43692864 43692924 -133281216 + AT_rich Low_complexity Low_complexity 1 60 0 20151 141 10 16 chrX 43692924 43697406 -133276734 - L1PA8A LINE L1 -13 6118 1673 1808 186 14 3 chrX 43697407 43697751 -133276389 - LTR49-int LTR ERV1 -931 5400 5053 741 67 38 0 chrX 43697776 43697881 -133276259 + L1PA4 LINE L1 8 116 -6030 * 32492 43 3 2 chrX 43697865 43702970 -133271170 + L1PA4 LINE L1 1094 6202 0 677 58 0 82 chrX 43703605 43703852 -133270288 + (TA)n Simple_repeat Simple_repeat 1 226 0 802 270 85 23 chrX 43703863 43704497 -133269643 + L1ME3 LINE L1 4468 5186 -960 9710 192 25 43 chrX 43704534 43707886 -133266254 + L1P3 LINE L1 10 3303 -3158 4950 116 7 3 chrX 43707886 43708618 -133265522 + L1PA10 LINE L1 5421 6158 -10 661 190 116 39 chrX 43708632 43708932 -133265208 + L1ME3 LINE L1 5220 5535 -629 356 233 114 86 chrX 43708933 43709143 -133264997 + L1ME3 LINE L1 5611 5826 -336 21 71 0 0 chrX 43710965 43711007 -133263133 + AT_rich Low_complexity Low_complexity 1 42 0 222 313 15 0 chrX 43711767 43711834 -133262306 + MIR3 SINE MIR 125 192 -16 240 206 16 0 chrX 43712993 43713056 -133261084 - Charlie5 DNA MER1_type -29 2583 2520 840 173 19 31 chrX 43713079 43713241 -133260899 - FRAM SINE Alu -6 160 1 736 159 75 53 chrX 43713245 43713472 -133260668 - Charlie5 DNA MER1_type -29 2583 2352 * 1000 148 82 1 chrX 43713470 43713666 -133260474 - Charlie5 DNA MER1_type -2507 105 1 22 0 0 0 chrX 43713762 43713784 -133260356 + AT_rich Low_complexity Low_complexity 1 22 0 224 194 0 0 chrX 43714011 43714047 -133260093 + polypyrimidine Low_complexity Low_complexity 1 36 0 436 308 28 28 chrX 43714176 43714390 -133259750 + L2 LINE L2 2564 2777 -537 23 54 0 0 chrX 43715274 43715311 -133258829 + AT_rich Low_complexity Low_complexity 1 37 0 215 317 98 32 chrX 43716888 43717011 -133257129 - MIR SINE MIR -109 153 23 1311 254 87 29 chrX 43717229 43717887 -133256253 + L1MC5 LINE L1 7187 7882 -79 698 280 11 32 chrX 43718009 43718195 -133255945 - MIR3 SINE MIR -10 198 17 402 261 84 124 chrX 43719921 43720301 -133253839 - L1M2 LINE L1 -5712 1137 773 222 37 0 0 chrX 43720438 43720465 -133253675 + (CCG)n Simple_repeat Simple_repeat 3 29 0 22 0 0 0 chrX 43720531 43720553 -133253587 + GC_rich Low_complexity Low_complexity 1 22 0 326 289 95 72 chrX 43720834 43721097 -133253043 + L1M4 LINE L1 4724 4992 -1154 189 0 0 0 chrX 43721154 43721175 -133252965 + (GCTG)n Simple_repeat Simple_repeat 4 24 0 1055 279 78 66 chrX 43722113 43723322 -133250818 - L1ME3A LINE L1 -31 6139 4889 231 36 0 0 chrX 43723322 43723350 -133250790 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1055 279 78 66 chrX 43723350 43723790 -133250350 - L1ME3A LINE L1 -1281 4889 4456 843 261 32 43 chrX 43723861 43724206 -133249934 - L1ME3A LINE L1 -1796 4350 4010 272 292 120 26 chrX 43724218 43724451 -133249689 - LTR41 LTR ERVL -9 764 510 369 0 0 0 chrX 43724708 43724749 -133249391 + (TG)n Simple_repeat Simple_repeat 1 41 0 539 220 11 94 chrX 43724936 43725127 -133249013 - LTR41 LTR ERVL -595 178 4 298 98 0 196 chrX 43725258 43725350 -133248790 + L1PB4 LINE L1 6076 6149 -7 45 55 0 0 chrX 43728129 43728202 -133245938 + AT_rich Low_complexity Low_complexity 1 73 0 1365 214 119 38 chrX 43728234 43728679 -133245461 - L1ME1 LINE L1 -99 6067 5587 407 183 296 0 chrX 43728679 43728794 -133245346 + LTR52-int LTR ERVL 5327 5475 -55 1556 204 44 72 chrX 43728796 43729274 -133244866 + LTR55 LTR ERV 1 467 -81 1981 109 3 3 chrX 43729274 43729603 -133244537 + AluSx SINE Alu 1 329 0 1556 204 44 72 chrX 43729603 43729666 -133244474 + LTR55 LTR ERV 467 530 -18 354 282 64 61 chrX 43732785 43733113 -133241027 + LTR52-int LTR ERVL 2316 2630 -926 315 0 0 0 chrX 43735644 43735679 -133238461 + (CA)n Simple_repeat Simple_repeat 2 36 0 1349 112 19 0 chrX 43736146 43736361 -133237779 - L1PA16 LINE L1 -3 6163 5945 2267 96 0 20 chrX 43736563 43736865 -133237275 - AluSg SINE Alu -14 296 1 1477 215 14 56 chrX 43738366 43738850 -133235290 + LTR55 LTR ERV 68 531 -17 20715 103 8 2 chrX 43738883 43741266 -133232874 - L1P LINE L1 -1429 4717 2307 276 30 0 0 chrX 43741266 43741299 -133232841 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 20715 103 8 2 chrX 43741299 43742097 -133232043 - L1P LINE L1 -3839 2307 1516 6475 70 12 3 chrX 43742097 43743535 -133230605 + L1PA7 LINE L1 4703 6149 -5 426 114 0 0 chrX 43743735 43743814 -133230326 + (TA)n Simple_repeat Simple_repeat 1 79 0 7511 66 0 22 chrX 43743815 43745618 -133228522 - L1PA5 LINE L1 -5 6149 4369 11345 153 19 21 chrX 43745678 43747819 -133226321 - L1P LINE L1 -4001 2145 11 4241 225 11 8 chrX 43747826 43748207 -133225933 - L1 LINE L1 -2842 3304 2926 2000 113 10 21 chrX 43748207 43748498 -133225642 - AluSg SINE Alu -22 288 1 4241 225 11 8 chrX 43748498 43749244 -133224896 - L1 LINE L1 -3220 2926 2173 * 25896 53 2 3 chrX 43749232 43753474 -133220666 - L1PA4 LINE L1 -1 6154 1918 9646 77 2 0 chrX 43753474 43754807 -133219333 + L1P LINE L1 619 1954 -4192 2216 140 13 10 chrX 43754810 43755278 -133218862 - L1PBa LINE L1 -3953 2909 2383 389 266 8 0 chrX 43755263 43755391 -133218749 - L1P LINE L1 -1606 4540 4412 * 6249 260 25 14 chrX 43755465 43757681 -133216459 - L1P LINE L1 -1752 4394 2154 2105 139 75 48 chrX 43757694 43757879 -133216261 - L1MA2 LINE L1 0 7723 7544 1672 181 10 10 chrX 43757879 43758177 -133215963 + AluSx SINE Alu 1 298 -14 2105 139 75 48 chrX 43758177 43758508 -133215632 - L1MA2 LINE L1 -179 7544 7193 336 247 59 0 chrX 43758518 43758603 -133215537 - MER58A DNA MER1_type -17 90 1 182 94 38 38 chrX 43758616 43758669 -133215471 + T-rich Low_complexity Low_complexity 1 53 0 2149 120 30 14 chrX 43758669 43759036 -133215104 - L1PB2 LINE L1 -3 6148 5776 236 137 20 0 chrX 43759050 43759101 -133215039 + (TA)n Simple_repeat Simple_repeat 1 52 0 631 169 8 0 chrX 43759102 43759220 -133214920 - L1PB2 LINE L1 -363 5788 5670 1133 210 20 8 chrX 43759220 43759481 -133214659 - LTR10B LTR ERV1 0 593 312 1599 208 100 17 chrX 43759509 43759989 -133214151 - LTR10B-int LTR ERV1 -6121 528 9 1147 208 23 8 chrX 43759992 43760251 -133213889 - LTR10B LTR ERV1 -2 545 312 11868 199 19 13 chrX 43760380 43761501 -133212639 - L1P5 LINE L1 -479 6388 5275 1971 126 18 3 chrX 43761501 43761786 -133212354 - AluSc SINE Alu -20 289 1 11868 199 19 13 chrX 43761786 43764437 -133209703 - L1P5 LINE L1 -1592 5275 2519 10343 193 25 26 chrX 43764440 43766315 -133207825 - L1MA2 LINE L1 -527 7196 5321 3559 161 8 21 chrX 43766315 43766935 -133207205 - LTR9 LTR ERV1 0 612 1 10343 193 25 26 chrX 43766935 43766961 -133207179 - L1MA2 LINE L1 -2402 5321 5296 2213 123 0 0 chrX 43766961 43767271 -133206869 + AluY SINE Alu 1 310 -1 10343 193 25 26 chrX 43767271 43767283 -133206857 - L1MA2 LINE L1 -2427 5296 5285 3348 35 0 0 chrX 43767283 43767686 -133206454 + L1PA4 LINE L1 5750 6152 -3 10343 193 25 26 chrX 43767686 43770597 -133203543 - L1MA2 LINE L1 -2438 5285 2373 629 248 79 53 chrX 43871854 43872120 -133102020 - L1MC4a LINE L1 -1674 6134 5862 426 257 122 57 chrX 43872549 43872794 -133101346 - MLT1K LTR MaLR -19 569 309 248 326 53 38 chrX 43872836 43872933 -133101207 - MLT1K LTR MaLR -355 233 132 3734 108 6 24 chrX 43872933 43873470 -133100670 - MER1A DNA MER1_type 0 527 1 248 326 53 38 chrX 43873470 43873504 -133100636 - MLT1K LTR MaLR -456 132 100 841 232 44 0 chrX 43874147 43874328 -133099812 - MER5A DNA MER1_type 0 189 1 313 290 75 31 chrX 43874374 43874531 -133099609 + MER5A DNA MER1_type 15 178 0 251 339 153 0 chrX 43874854 43875043 -133099097 + MIR SINE MIR 34 251 -11 497 277 71 68 chrX 43875350 43875660 -133098480 - L2 LINE L2 -70 3243 2933 1756 126 29 0 chrX 43875812 43876117 -133098023 - AluSp SINE Alu 0 313 1 2076 203 74 28 chrX 43879582 43880350 -133093790 - L1M4 LINE L1 -705 5473 4673 1378 104 0 0 chrX 43880357 43880539 -133093601 - AluSg/x SINE Alu 0 312 131 761 147 88 163 chrX 43880545 43880865 -133093275 - L1M4 LINE L1 -1478 4668 4373 1207 178 44 4 chrX 43880867 43881163 -133092977 + MER21B LTR ERV1 1 339 -524 6895 18 0 2 chrX 43881164 43882373 -133091767 + L1PA3 LINE L1 4836 6042 -113 519 172 57 51 chrX 43882474 43882631 -133091509 - L1M4 LINE L1 -2149 3997 3840 4053 207 66 13 chrX 43882638 43884058 -133090082 - L1MB4 LINE L1 0 6416 4909 198 0 0 0 chrX 43884058 43884080 -133090060 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4053 207 66 13 chrX 43884080 43884210 -133089930 - L1MB4 LINE L1 -1507 4909 4787 1031 218 23 5 chrX 43884205 43884425 -133089715 - L1MB4 LINE L1 -4635 1749 1526 * 2165 239 46 75 chrX 43884445 43885289 -133088851 + L1M3e LINE L1 7 2086 -4944 409 162 22 59 chrX 43885570 43885754 -133088386 - L1MA4 LINE L1 -279 6021 5771 4702 173 38 31 chrX 43885771 43887565 -133086575 - L1PB4 LINE L1 -9 6147 4316 3208 234 25 29 chrX 43887569 43888578 -133085562 - L1PB4 LINE L1 -2542 3604 2600 2221 192 31 6 chrX 43888598 43889088 -133085052 - L1M1 LINE L1 -536 5764 5263 2379 144 8 0 chrX 43889090 43889478 -133084662 - L1PA15 LINE L1 -2 6163 5773 3258 119 9 13 chrX 43889494 43890032 -133084108 - L1MA2 LINE L1 0 7723 7188 921 28 0 0 chrX 43890053 43890162 -133083978 - L1PA3 LINE L1 -3 6152 6044 5030 167 23 10 chrX 43890162 43891389 -133082751 - L1MA2 LINE L1 -540 7184 5974 840 48 0 0 chrX 43891389 43891494 -133082646 + (TA)n Simple_repeat Simple_repeat 1 105 0 261 0 0 0 chrX 43891493 43891522 -133082618 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 5030 167 23 10 chrX 43891494 43891523 -133082617 - L1MA2 LINE L1 -1750 5974 5947 2080 116 0 0 chrX 43891523 43891800 -133082340 - AluSx SINE Alu -35 277 1 5030 167 23 10 chrX 43891800 43892036 -133082104 - L1MA2 LINE L1 -1777 5947 5698 * 5425 118 26 33 chrX 43892033 43892947 -133081193 - L1MA2 LINE L1 -4134 3431 2523 2060 130 7 0 chrX 43892947 43893246 -133080894 - AluSx SINE Alu -11 301 1 5425 118 26 33 chrX 43893246 43893322 -133080818 - L1MA2 LINE L1 -5042 2523 2448 2787 51 3 0 chrX 43893326 43893676 -133080464 - L1PA5 LINE L1 -1 6153 5803 21564 50 50 1 chrX 43893690 43896641 -133077499 - L1PA5 LINE L1 -683 5472 2368 230 218 18 0 chrX 43896645 43896700 -133077440 + MLT1C LTR MaLR 410 465 -2 453 182 31 10 chrX 43896767 43896882 -133077258 - L1M LINE L1 -766 5403 5282 1082 185 15 0 chrX 43896979 43897184 -133076956 - L1PB3 LINE L1 0 6154 5947 415 233 0 0 chrX 43897236 43897322 -133076818 - AluJ/FRAM SINE Alu 0 302 217 3703 163 68 29 chrX 43897348 43898646 -133075494 - L1MA4A LINE L1 -206 6097 4740 315 233 6 12 chrX 43898690 43898853 -133075287 + (TA)n Simple_repeat Simple_repeat 1 162 0 308 267 11 11 chrX 43898865 43898955 -133075185 + L1MC4 LINE L1 6614 6703 -1339 366 267 0 0 chrX 43898964 43899054 -133075086 + L1MC4 LINE L1 6614 6703 -1339 360 289 0 0 chrX 43898986 43899076 -133075064 - L1MC4 LINE L1 -1339 6703 6614 * 519 237 0 0 chrX 43899089 43899515 -133074625 + (TA)n Simple_repeat Simple_repeat 1 426 0 3984 111 3 0 chrX 43899536 43900106 -133074034 - L1PA12 LINE L1 -25 6143 5572 5665 255 88 25 chrX 43900108 43903497 -133070643 - L1PA15-16 LINE L1 -1398 5451 1809 3021 191 12 11 chrX 43903503 43904142 -133069998 - L1P LINE L1 -993 5153 4514 * 20587 172 25 83 chrX 43904140 43905950 -133068190 - L1PA11 LINE L1 -25 6149 4235 13664 63 3 1 chrX 43905950 43908443 -133065697 - L1PA6 LINE L1 -7 6147 3597 20587 172 25 83 chrX 43908443 43909507 -133064633 - L1PA11 LINE L1 -1939 4235 3111 2062 137 0 28 chrX 43909507 43909829 -133064311 - AluSq SINE Alu 0 313 1 20587 172 25 83 chrX 43909829 43913491 -133060649 - L1PA11 LINE L1 -3063 3111 4 1883 259 55 6 chrX 43913486 43914162 -133059978 - L1M2b LINE L1 -3314 3894 3186 * 11113 124 26 21 chrX 43914184 43920492 -133053648 - L1PA7 LINE L1 -8 6461 1 1849 279 42 34 chrX 43920552 43921923 -133052217 - L1PA15-16 LINE L1 -4068 2135 776 396 0 0 0 chrX 43921923 43921967 -133052173 + (TA)n Simple_repeat Simple_repeat 2 45 0 2150 130 3 0 chrX 43921971 43922271 -133051869 - AluSx SINE Alu 0 312 12 1849 279 42 34 chrX 43922271 43922596 -133051544 - L1PA15-16 LINE L1 -5429 774 401 330 374 44 18 chrX 43922712 43923052 -133051088 - L1PA15-16 LINE L1 -5799 405 57 283 345 22 22 chrX 43923104 43923323 -133050817 - L1M2b LINE L1 -5254 1955 439 1811 169 63 31 chrX 43923692 43924230 -133049910 - MLT2A2 LTR ERVL 0 554 1 15651 123 36 16 chrX 43924230 43926771 -133047369 - HERVL-A2 LTR ERVL 0 5654 3064 9848 117 7 2 chrX 43926770 43928228 -133045912 - HERVL-A2 LTR ERVL -3128 2526 1062 * 311 155 0 0 chrX 43928228 43928286 -133045854 + L1PA7 LINE L1 1582 1639 -4507 * 15829 110 11 2 chrX 43928285 43930949 -133043191 + L1PA7 LINE L1 2792 5475 -697 23431 68 3 2 chrX 43930950 43934157 -133039983 + L1P LINE L1 1 3208 -2938 195 42 0 0 chrX 43934158 43934182 -133039958 + (T)n Simple_repeat Simple_repeat 1 24 0 2367 89 3 0 chrX 43934185 43934510 -133039630 - L1PA3 LINE L1 -3 6467 6142 2881 104 7 0 chrX 43934612 43935034 -133039106 + L1PA7 LINE L1 5717 6141 -13 21798 130 103 15 chrX 43935055 43938620 -133035520 - L1PA3 LINE L1 -697 5790 2540 378 0 0 0 chrX 43938620 43938662 -133035478 + (TG)n Simple_repeat Simple_repeat 2 43 0 2138 109 0 17 chrX 43938662 43938955 -133035185 - AluY SINE Alu -23 288 1 21798 130 103 15 chrX 43938955 43939876 -133034264 - L1PA3 LINE L1 -3947 2540 1701 1904 155 6 28 chrX 43939876 43940193 -133033947 + AluSp SINE Alu 1 310 -3 21798 130 103 15 chrX 43940193 43941011 -133033129 - L1PA3 LINE L1 -4786 1701 4 2150 109 14 0 chrX 43941561 43941854 -133032286 - AluSx SINE Alu -13 299 3 678 263 23 55 chrX 43942552 43942769 -133031371 + MER63A DNA MER1_type 1 210 0 847 117 73 0 chrX 43943951 43944130 -133030010 + L1MA7 LINE L1 6100 6291 0 2179 281 87 22 chrX 43944147 43944927 -133029213 - HERVL40 LTR ERVL -2978 2552 1722 1227 276 66 8 chrX 43944957 43945338 -133028802 - HERVL40 LTR ERVL -3876 1654 1252 407 309 72 11 chrX 43945367 43945548 -133028592 - HERVL40 LTR ERVL -5319 211 20 1209 228 62 16 chrX 43945568 43946081 -133028059 - LTR40a LTR ERVL -4 515 44 3325 173 10 15 chrX 43946109 43946711 -133027429 + MER7C DNA MER2_type 4 602 0 336 321 52 38 chrX 43946932 43947144 -133026996 - L2 LINE L2 -2 3311 3097 326 317 128 50 chrX 43947209 43947686 -133026454 - L1M4 LINE L1 -813 5333 4820 1086 292 18 30 chrX 43947710 43948288 -133025852 + L2 LINE L2 2633 3198 -115 448 249 17 70 chrX 43948372 43948613 -133025527 - MER102b DNA MER1_type -5 336 109 302 222 150 72 chrX 43952589 43952742 -133021398 - HAL1 LINE L1 -2335 172 8 24 32 0 0 chrX 43953783 43953814 -133020326 + AT_rich Low_complexity Low_complexity 1 31 0 2469 274 128 38 chrX 43954106 43955134 -133019006 + L2 LINE L2 1740 2860 -454 312 167 13 51 chrX 43955140 43955218 -133018922 - MER116 DNA Mariner -5 75 1 319 321 20 4 chrX 43955220 43955343 -133018797 + L2 LINE L2 2861 2983 -289 476 291 19 75 chrX 43955435 43955703 -133018437 - MLT1J2 LTR MaLR 0 450 198 1130 214 19 12 chrX 43955735 43956057 -133018083 - MER33 DNA MER1_type 0 324 1 258 345 7 22 chrX 43956066 43956205 -133017935 - MLT1J1 LTR MaLR -272 174 38 487 239 17 34 chrX 43956290 43956466 -133017674 - L1MD3 LINE L1 -915 7080 6908 2281 113 0 0 chrX 43956466 43956766 -133017374 - AluSg SINE Alu -10 300 1 3066 217 99 39 chrX 43956784 43957504 -133016636 - L1MD3 LINE L1 -743 5403 4728 2120 135 0 0 chrX 43957504 43957801 -133016339 - AluSc SINE Alu -12 297 1 3066 217 99 39 chrX 43957801 43958106 -133016034 - L1MD3 LINE L1 -1418 4728 5432 2253 110 3 0 chrX 43958106 43958405 -133015735 - AluSp SINE Alu 0 313 14 3066 217 99 39 chrX 43958405 43958720 -133015420 - L1MD3 LINE L1 -713 5433 5138 5110 131 19 48 chrX 43958755 43960046 -133014094 - L1PB2 LINE L1 0 6151 4885 436 105 11 11 chrX 43960049 43960144 -133013996 + (TA)n Simple_repeat Simple_repeat 2 96 0 1176 32 0 0 chrX 43960145 43960299 -133013841 - L1PA5 LINE L1 -831 5315 5162 6948 47 1 0 chrX 43960299 43961138 -133013002 + L1PA5 LINE L1 5304 6147 -7 4630 205 20 25 chrX 43961364 43962970 -133011170 + L1PA15 LINE L1 3912 5501 -664 1690 213 0 0 chrX 43962970 43963280 -133010860 + AluJb SINE Alu 1 310 -2 4630 205 20 25 chrX 43963280 43963929 -133010211 + L1PA15 LINE L1 5501 6152 -13 14310 209 57 11 chrX 43963948 43969168 -133004972 + L1PA13 LINE L1 1 5468 -1329 209 164 36 0 chrX 43969180 43969235 -133004905 + (TA)n Simple_repeat Simple_repeat 1 57 0 23556 79 8 2 chrX 43969271 43972611 -133001529 - L1P LINE L1 -2559 3587 227 450 133 13 0 chrX 43972714 43972789 -133001351 - AluS SINE Alu -234 76 1 198 275 0 0 chrX 43973038 43973078 -133001062 - L2 LINE L2 -10 3303 3264 339 238 78 0 chrX 43973110 43973223 -133000917 - MIR SINE MIR -61 147 32 1440 284 42 35 chrX 43973405 43973959 -133000181 - L2 LINE L2 0 3313 2749 1045 289 50 3 chrX 43973959 43974302 -132999838 - LTR16A LTR ERVL 0 450 92 2427 234 79 20 chrX 43974358 43975055 -132999085 - L2 LINE L2 -561 2753 2016 618 204 8 23 chrX 43975546 43975678 -132998462 + FLAM_A SINE Alu 4 133 0 305 373 49 20 chrX 43976578 43976782 -132997358 + L2 LINE L2 2767 2976 -338 311 309 50 7 chrX 43977240 43977379 -132996761 - MIR3 SINE MIR -59 149 5 201 284 11 84 chrX 43977630 43977725 -132996415 + MIR SINE MIR 28 115 -93 2223 105 10 10 chrX 43978249 43978555 -132995585 - AluSx SINE Alu -1 311 6 22 88 0 0 chrX 43978657 43978714 -132995426 + AT_rich Low_complexity Low_complexity 1 57 0 362 306 70 16 chrX 43978837 43979023 -132995117 - MIR3 SINE MIR -5 203 8 207 0 0 0 chrX 43979373 43979396 -132994744 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 326 264 107 0 chrX 43979412 43979539 -132994601 - L1MC/D LINE L1 -463 5699 5558 220 303 109 40 chrX 43980591 43980766 -132993374 - L2 LINE L2 -527 2787 2601 2457 115 93 25 chrX 43981620 43982019 -132992121 - MSTC LTR MaLR 0 428 3 459 285 13 0 chrX 43982247 43982398 -132991742 - L1ME LINE L1 -362 5808 5656 22 0 0 0 chrX 43983226 43983248 -132990892 + AT_rich Low_complexity Low_complexity 1 22 0 2593 137 81 19 chrX 43983969 43984547 -132989593 + MER4B LTR ERV1 1 779 0 2333 164 39 116 chrX 43984750 43985477 -132988663 - LTR8 LTR ERV1 -20 671 1 503 214 0 27 chrX 43985504 43985643 -132988497 - L1PA8A LINE L1 0 6131 6019 239 111 0 0 chrX 43985643 43985688 -132988452 - L1PA4 LINE L1 -116 6039 5995 18346 52 2 2 chrX 43985981 43989105 -132985035 - L1PA4 LINE L1 -3 6152 3028 477 91 0 0 chrX 43989148 43989214 -132984926 - AluSq/x SINE Alu -182 131 66 886 134 0 42 chrX 43989214 43989356 -132984784 + AluSg/x SINE Alu 168 303 -9 4457 128 71 11 chrX 43989392 43990220 -132983920 + Tigger3(Golem) DNA MER2_type 2150 3027 -2 207 213 0 21 chrX 43990222 43990269 -132983871 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 27 29 0 0 chrX 43990562 43990596 -132983544 + AT_rich Low_complexity Low_complexity 1 34 0 316 236 67 0 chrX 43990833 43990922 -132983218 - MIR SINE MIR -21 241 147 2422 53 0 10 chrX 43990944 43991304 -132982836 - AluY SINE Alu 0 311 1 917 203 74 12 chrX 43991309 43991656 -132982484 - MLT1E2 LTR MaLR -1 625 206 246 32 0 0 chrX 43992254 43992285 -132981855 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 219 114 0 0 chrX 43994091 43994126 -132980014 + (CA)n Simple_repeat Simple_repeat 1 35 0 956 266 87 46 chrX 43994465 43994526 -132979614 - HAL1 LINE L1 -4 2503 2446 1536 221 45 11 chrX 43994526 43994879 -132979261 - MLT1A1 LTR MaLR 0 365 1 956 266 87 46 chrX 43994879 43995452 -132978688 - HAL1 LINE L1 -61 2446 1843 204 214 0 0 chrX 43995799 43995841 -132978299 + (TG)n Simple_repeat Simple_repeat 2 43 0 279 71 0 0 chrX 43995984 43996026 -132978114 + (TG)n Simple_repeat Simple_repeat 1 42 0 2076 135 5 60 chrX 43996223 43996264 -132977876 + THE1B LTR MaLR 1 43 -321 2293 97 3 3 chrX 43996264 43996562 -132977578 - AluSg SINE Alu -8 302 5 2076 135 5 60 chrX 43996562 43996905 -132977235 + THE1B LTR MaLR 43 364 0 593 226 189 25 chrX 43997585 43997828 -132976312 - LTR40b LTR ERVL -2 460 178 1756 163 53 94 chrX 43997838 43998361 -132975779 - L1MA9 LINE L1 -24 6288 5787 244 75 75 25 chrX 43998368 43998448 -132975692 + (TA)n Simple_repeat Simple_repeat 1 84 0 710 145 7 7 chrX 43998472 43998610 -132975530 - L1MA9 LINE L1 -1517 4629 4492 1627 190 32 0 chrX 43998614 43998962 -132975178 - L1M2 LINE L1 -526 5786 5428 6683 220 33 31 chrX 43998974 44001650 -132972490 - L1MA2 LINE L1 0 7723 5053 2100 120 9 29 chrX 44001650 44001966 -132972174 - AluSg SINE Alu 0 310 1 6683 220 33 31 chrX 44001966 44002168 -132971972 - L1MA2 LINE L1 -2670 5053 4853 1545 155 14 22 chrX 44002168 44002446 -132971694 - AluSx SINE Alu -6 306 31 6683 220 33 31 chrX 44002446 44002460 -132971680 - L1MA2 LINE L1 -2870 4853 4841 2276 89 3 10 chrX 44002460 44002764 -132971376 - AluSc SINE Alu -7 302 1 6683 220 33 31 chrX 44002764 44004113 -132970027 - L1MA2 LINE L1 -2882 4841 3458 432 0 0 0 chrX 44004113 44004161 -132969979 + (TG)n Simple_repeat Simple_repeat 2 49 0 6683 220 33 31 chrX 44004161 44004297 -132969843 - L1MA2 LINE L1 -4265 3458 3324 6508 116 18 37 chrX 44004299 44005390 -132968750 - MER11C LTR ERVK 0 1071 1 3081 57 50 2 chrX 44005390 44005810 -132968330 - HERVK11 LTR ERVK 0 7953 7514 5140 74 7 8 chrX 44005811 44006525 -132967615 + L1PA4 LINE L1 1 713 -5433 * 26983 51 3 1 chrX 44006524 44010887 -132963253 + L1PA4 LINE L1 1780 6147 -8 4493 51 5 0 chrX 44010904 44011473 -132962667 - HERVK11 LTR ERVK -427 7526 6955 * 40821 73 10 2 chrX 44011461 44016849 -132957291 - HERVK11 LTR ERVK -1188 6765 1332 6422 243 81 23 chrX 44016971 44018549 -132955591 - L1MA2 LINE L1 -5793 1772 91 1983 147 7 0 chrX 44018549 44018842 -132955298 - AluSx SINE Alu -17 295 1 6422 243 81 23 chrX 44018842 44018927 -132955213 - L1MA2 LINE L1 -7474 91 12 1500 236 37 3 chrX 44018957 44019339 -132954801 - L1 LINE L1 -907 5239 4845 823 150 0 8 chrX 44019339 44019472 -132954668 + MER4A LTR ERV1 1 132 -532 2344 107 7 0 chrX 44019472 44019780 -132954360 + AluSg SINE Alu 1 310 0 250 150 83 0 chrX 44019782 44019842 -132954298 + MER4A LTR ERV1 101 165 -499 4708 228 26 12 chrX 44019982 44020420 -132953720 - L1 LINE L1 -1298 4848 4418 1333 150 0 5 chrX 44020420 44020627 -132953513 + L1PA14 LINE L1 5956 6161 0 4708 228 26 12 chrX 44020627 44021432 -132952708 - L1 LINE L1 -1728 4418 3587 788 292 25 7 chrX 44021430 44021707 -132952433 + L1 LINE L1 2596 2877 -3269 * 1444 96 0 55 chrX 44021707 44021925 -132952215 - AluY SINE Alu -8 303 98 992 252 87 8 chrX 44021925 44022294 -132951846 + L1 LINE L1 2866 3263 -2883 * 7883 271 47 24 chrX 44022293 44025576 -132948564 + L1PA12 LINE L1 1 2639 -4945 1882 157 178 22 chrX 44025576 44025946 -132948194 - MSTA LTR MaLR 0 428 1 7883 271 47 24 chrX 44025946 44027133 -132947007 + L1PA12 LINE L1 2639 3797 -3787 411 203 8 41 chrX 44027249 44027372 -132946768 + L1 LINE L1 3633 3751 -2395 1875 161 161 13 chrX 44027372 44027745 -132946395 - MSTA LTR MaLR 0 428 1 4855 213 8 14 chrX 44027745 44028676 -132945464 - MSTA-int LTR MaLR 0 1580 656 1376 210 78 0 chrX 44028676 44028971 -132945169 - MSTA-int LTR MaLR -1260 320 3 262 162 20 0 chrX 44028973 44029022 -132945118 - THE1B LTR MaLR 0 364 323 12906 113 5 20 chrX 44029023 44035024 -132939116 + L1PA6 LINE L1 11 6122 -32 2971 9 0 0 chrX 44035024 44035342 -132938798 - AluYb8 SINE Alu 0 318 1 12906 113 5 20 chrX 44035342 44035375 -132938765 + L1PA6 LINE L1 6122 6154 0 3280 55 3 0 chrX 44035380 44035761 -132938379 + L1PA6 LINE L1 5770 6151 -3 1072 223 179 18 chrX 44035761 44036102 -132938038 - MSTB LTR MaLR -30 396 1 2797 213 11 0 chrX 44036102 44036657 -132937483 + L1P LINE L1 3747 4307 -1839 844 187 0 91 chrX 44036974 44037204 -132936936 + L1P LINE L1 4447 4655 -1491 32459 128 25 35 chrX 44037205 44043359 -132930781 + L1PA8A LINE L1 2 6099 -32 234 0 0 0 chrX 44043384 44043410 -132930730 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 492 141 0 0 chrX 44043417 44043495 -132930645 + L1PA6 LINE L1 6064 6141 -13 189 74 0 0 chrX 44043498 44043525 -132930615 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 965 186 0 0 chrX 44043531 44043724 -132930416 + L1P LINE L1 4643 4835 -1311 2946 137 4 4 chrX 44043733 44044185 -132929955 - MER41A LTR ERV1 -101 453 2 11990 130 19 18 chrX 44044186 44044856 -132929284 - MER41A-int LTR ERV1 -2 5944 5276 1813 142 0 25 chrX 44044856 44045181 -132928959 - AluSq SINE Alu 0 326 9 11990 130 19 18 chrX 44045181 44045910 -132928230 - MER41A-int LTR ERV1 -670 5276 4549 1952 188 36 28 chrX 44045910 44046271 -132927869 - THE1B LTR MaLR 0 364 1 11990 130 19 18 chrX 44046271 44047438 -132926702 - MER41A-int LTR ERV1 -1397 4549 2555 6444 111 21 4 chrX 44047439 44048860 -132925280 - L1PA7 LINE L1 -3 6466 5031 8056 138 4 35 chrX 44048863 44050250 -132923890 - L1PA7 LINE L1 -1554 4907 3564 * 42208 65 3 1 chrX 44050239 44056381 -132917759 - L1PA4 LINE L1 0 6155 4 13652 164 18 112 chrX 44056386 44059992 -132914148 - L1PA7 LINE L1 -2882 3579 2 2388 167 56 12 chrX 44059987 44060491 -132913649 - MER41A-int LTR ERV1 -3687 4129 3604 * 1420 169 6 114 chrX 44060491 44060616 -132913524 + AluJo SINE Alu 1 138 -174 7473 32 1 0 chrX 44060616 44061556 -132912584 + L1PA3 LINE L1 5207 6147 -8 1420 169 6 114 chrX 44061556 44061762 -132912378 + AluJo SINE Alu 138 296 -16 1879 138 52 2 chrX 44061768 44062195 -132911945 - MER41A-int LTR ERV1 -4199 3617 1081 * 3256 165 80 3 chrX 44062183 44062771 -132911369 - MER41A-int LTR ERV1 -5313 633 1 3603 129 0 0 chrX 44062860 44063411 -132910729 - MER41A LTR ERV1 -3 551 1 1500 211 60 9 chrX 44063412 44063762 -132910378 + LOR1b LTR ERV1 94 461 0 1858 188 9 3 chrX 44063775 44064116 -132910024 + LOR1b-int LTR ERV1 29 371 -7749 1184 202 12 12 chrX 44064133 44064381 -132909759 + LOR1-int LTR ERV1 203 450 -7670 2318 148 55 72 chrX 44064454 44065023 -132909117 + LOR1-int LTR ERV1 451 1009 -7111 574 167 0 0 chrX 44065025 44065115 -132909025 - AluJb SINE Alu -23 289 200 1035 176 73 42 chrX 44065115 44065428 -132908712 - LOR1-int LTR ERV1 -3540 4580 4258 10313 171 96 13 chrX 44065540 44067441 -132906699 + L1M1 LINE L1 1294 3036 -4529 365 0 22 0 chrX 44067441 44067486 -132906654 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 10313 171 96 13 chrX 44067486 44067843 -132906297 + L1M1 LINE L1 3036 3362 -4203 2319 170 24 5 chrX 44067843 44068260 -132905880 - MSTA LTR MaLR 0 428 4 10313 171 96 13 chrX 44068260 44068374 -132905766 + L1M1 LINE L1 3362 3860 -3705 259 232 58 0 chrX 44068511 44068580 -132905560 - MER63 DNA MER1_type -362 700 2 274 130 0 0 chrX 44068783 44068829 -132905311 - L1 LINE L1 -2334 3812 3767 1675 175 3 15 chrX 44068865 44069202 -132904938 - L1 LINE L1 -1113 5033 4701 5244 188 33 26 chrX 44069231 44070344 -132903796 + THE1-int LTR MaLR 427 1547 -33 1494 251 41 16 chrX 44070342 44070907 -132903233 - L1 LINE L1 -2938 3208 2630 * 752 155 52 32 chrX 44071103 44071258 -132902882 - LTR49 LTR ERV1 0 595 438 2931 200 42 3 chrX 44071426 44072075 -132902065 + L1M1 LINE L1 1756 2429 -5136 261 224 0 79 chrX 44072075 44072151 -132901989 + AluJ/FRAM SINE Alu 233 302 0 365 202 28 0 chrX 44072151 44072260 -132901880 + L1M1 LINE L1 2422 2533 -5032 508 78 26 0 chrX 44072261 44072338 -132901802 - L1PA7 LINE L1 -8 6146 6068 3348 147 2 0 chrX 44072344 44072881 -132901259 + L1P LINE L1 11 548 -5598 1850 52 0 0 chrX 44072885 44073136 -132901004 + L1P LINE L1 2382 2632 -3514 * 17904 60 4 1 chrX 44073135 44075604 -132898536 - L1P LINE L1 -1248 4898 2423 27973 49 3 2 chrX 44075619 44080132 -132894008 - L1PA4 LINE L1 -8 6147 1631 42138 78 9 2 chrX 44080137 44085889 -132888251 + HERVK11 LTR ERVK 970 6765 -1188 4493 51 5 0 chrX 44085877 44086446 -132887694 + HERVK11 LTR ERVK 6955 7526 -427 * 3099 45 0 3 chrX 44086466 44086843 -132887297 - L1PA6 LINE L1 -11 6143 5768 432 151 11 32 chrX 44087013 44087106 -132887034 + ERVL LTR ERVL 5537 5627 -137 5440 244 143 25 chrX 44087109 44089550 -132884590 - L1M2 LINE L1 -4185 2922 154 1733 132 4 0 chrX 44089550 44089792 -132884348 - AluSx SINE Alu -16 296 54 5440 244 143 25 chrX 44089792 44089961 -132884179 - L1M2 LINE L1 -6953 154 6 2255 94 13 7 chrX 44089990 44090288 -132883852 + AluSp SINE Alu 1 300 -13 696 250 39 58 chrX 44090343 44090651 -132883489 - L1MB8 LINE L1 -16 6162 5861 2452 209 42 32 chrX 44090690 44090951 -132883189 - L1MB8 LINE L1 -290 5884 5627 1993 82 96 14 chrX 44090951 44091233 -132882907 - AluSx SINE Alu -7 305 1 2452 209 42 32 chrX 44091233 44091565 -132882575 - L1MB8 LINE L1 -547 5627 5300 1878 139 3 37 chrX 44091565 44091890 -132882250 - AluSx SINE Alu 0 315 1 2452 209 42 32 chrX 44091890 44092648 -132881492 - L1MB8 LINE L1 -874 5300 4521 28 0 0 0 chrX 44092971 44092999 -132881141 + AT_rich Low_complexity Low_complexity 1 28 0 206 79 0 53 chrX 44093487 44093525 -132880615 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chrX 44094290 44094316 -132879824 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chrX 44094494 44094526 -132879614 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chrX 44094603 44094627 -132879513 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chrX 44095190 44095225 -132878915 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 44095894 44095916 -132878224 + AT_rich Low_complexity Low_complexity 1 22 0 1999 135 0 10 chrX 44096426 44096723 -132877417 + AluSc SINE Alu 3 296 -13 219 331 0 0 chrX 44097135 44097262 -132876878 + A-rich Low_complexity Low_complexity 1 127 0 1575 54 10 0 chrX 44098031 44098234 -132875906 - L1PA5 LINE L1 -15 6139 5935 235 232 0 18 chrX 44098388 44098444 -132875696 + GA-rich Low_complexity Low_complexity 1 55 0 11532 110 10 56 chrX 44099001 44105392 -132868748 + L1PA7 LINE L1 2 6150 -4 198 0 0 0 chrX 44107393 44107415 -132866725 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 465 178 0 0 chrX 44109198 44109316 -132864824 + (TG)n Simple_repeat Simple_repeat 1 118 0 380 236 0 8 chrX 44109813 44109940 -132864200 + GA-rich Low_complexity Low_complexity 2 127 0 212 122 20 20 chrX 44111429 44111478 -132862662 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 352 300 18 0 chrX 44113251 44113421 -132860719 + (TG)n Simple_repeat Simple_repeat 2 174 0 333 191 29 0 chrX 44113858 44113963 -132860177 + GA-rich Low_complexity Low_complexity 2 109 0 705 136 32 7 chrX 44113979 44114134 -132860006 + GA-rich Low_complexity Low_complexity 2 160 0 182 253 0 13 chrX 44114154 44114233 -132859907 + GA-rich Low_complexity Low_complexity 2 79 0 289 103 0 0 chrX 44116199 44116238 -132857902 - Alu SINE Alu -264 39 1 11881 194 32 7 chrX 44116239 44117743 -132856397 + L1MA2 LINE L1 2428 3892 -2412 7636 34 1 0 chrX 44117743 44119081 -132855059 + L1PA3 LINE L1 4817 6155 0 11881 194 32 7 chrX 44119081 44120930 -132853210 + L1MA2 LINE L1 3892 5891 -413 3057 167 39 78 chrX 44120930 44121649 -132852491 + LTR8 LTR ERV1 1 691 0 11881 194 32 7 chrX 44121649 44122074 -132852066 + L1MA2 LINE L1 5891 6304 0 1540 207 3 6 chrX 44122081 44122400 -132851740 + LOR1-int LTR ERV1 4706 5023 -3097 642 222 0 0 chrX 44122401 44122509 -132851631 - LTR32 LTR ERVL -246 225 118 1280 130 0 0 chrX 44122509 44122693 -132851447 - AluSg SINE Alu 0 312 129 43148 56 2 0 chrX 44122695 44128818 -132845322 - L1PA4 LINE L1 -14 6141 7 954 148 0 7 chrX 44128820 44128969 -132845171 - AluSg SINE Alu -162 148 1 302 265 51 60 chrX 44128969 44129086 -132845054 - LTR32 LTR ERVL -343 128 13 603 233 19 102 chrX 44129096 44129311 -132844829 - HERVL32 LTR ERVL -7 3411 3215 * 1514 317 43 40 chrX 44129229 44130096 -132844044 - PRIMA41-int LTR ERV1 -305 7451 6583 1560 128 5 0 chrX 44130354 44130572 -132843568 + AluSp SINE Alu 1 219 -94 325 113 0 0 chrX 44130572 44130625 -132843515 + AluSp SINE Alu 251 303 0 1778 194 77 17 chrX 44131061 44131463 -132842677 - MSTB LTR MaLR 0 426 1 6642 224 60 69 chrX 44132292 44132659 -132841481 - HERVL32 LTR ERVL -223 3195 2826 2171 111 0 0 chrX 44132659 44132965 -132841175 + AluSg SINE Alu 1 306 0 6642 224 60 69 chrX 44132965 44134746 -132839394 - HERVL32 LTR ERVL -592 2826 1438 2357 186 25 20 chrX 44134746 44135193 -132838947 - LTR32 LTR ERVL -13 458 10 28 29 0 0 chrX 44135832 44135867 -132838273 + AT_rich Low_complexity Low_complexity 1 35 0 19769 193 35 17 chrX 44136159 44138837 -132835303 + L1M1 LINE L1 12 2640 -4925 2575 105 8 0 chrX 44138837 44139189 -132834951 + THE1A LTR MaLR 1 355 0 10583 123 27 0 chrX 44139189 44140727 -132833413 + THE1A-int LTR MaLR 1 1580 0 2636 99 3 0 chrX 44140727 44141081 -132833059 + THE1A LTR MaLR 1 355 0 19769 193 35 17 chrX 44141081 44141141 -132832999 + L1M1 LINE L1 2640 2697 -4868 2020 158 0 0 chrX 44141141 44141438 -132832702 + AluSx SINE Alu 1 297 -15 19769 193 35 17 chrX 44141438 44142190 -132831950 + L1M1 LINE L1 2697 3434 -4131 1767 121 71 14 chrX 44142190 44142351 -132831789 - AluSp SINE Alu -15 298 113 222 91 0 0 chrX 44142351 44142384 -132831756 + (TG)n Simple_repeat Simple_repeat 2 34 0 1767 121 71 14 chrX 44142384 44142504 -132831636 - AluSp SINE Alu -200 113 1 19769 193 35 17 chrX 44142504 44143267 -132830873 + L1M1 LINE L1 3434 4182 -3383 1969 99 52 4 chrX 44143267 44143560 -132830580 + AluY SINE Alu 1 306 0 19769 193 35 17 chrX 44143560 44144086 -132830054 + L1M1 LINE L1 4182 4901 -2664 1908 164 3 3 chrX 44144086 44144385 -132829755 + AluSx SINE Alu 1 299 -13 19769 193 35 17 chrX 44144385 44144544 -132829596 + L1M1 LINE L1 4901 5056 -2509 * 27983 132 15 73 chrX 44144531 44145760 -132828380 - L1PA8 LINE L1 -5 6167 4869 2135 137 0 0 chrX 44145760 44146060 -132828080 - AluSq SINE Alu -13 300 1 27983 132 15 73 chrX 44146060 44151372 -132822768 - L1PA8 LINE L1 -1303 4869 12 27 0 0 0 chrX 44151717 44151744 -132822396 + AT_rich Low_complexity Low_complexity 1 27 0 831 150 0 0 chrX 44151927 44152054 -132822086 + L1PB3 LINE L1 6010 6136 -18 1828 288 61 36 chrX 44152058 44153503 -132820637 - L1M3de LINE L1 -4752 1203 12 1295 96 5 16 chrX 44153587 44153775 -132820365 + L1PA8 LINE L1 5985 6170 -2 487 321 84 20 chrX 44153866 44154162 -132819978 + MLT1K LTR MaLR 158 472 -116 204 309 81 37 chrX 44154168 44154304 -132819836 + L2 LINE L2 3172 3313 0 1594 115 167 0 chrX 44154382 44154634 -132819506 + AluSx SINE Alu 1 294 -18 420 330 74 41 chrX 44154652 44154921 -132819219 - L1M4 LINE L1 -1161 4985 4726 1832 175 11 0 chrX 44154921 44155207 -132818933 - AluSx SINE Alu -23 289 1 420 330 74 41 chrX 44155207 44155449 -132818691 - L1M4 LINE L1 -1420 4726 4457 14700 69 6 0 chrX 44155498 44157992 -132816148 + L1PA4 LINE L1 2 2517 -3629 4325 60 0 9 chrX 44157992 44158537 -132815603 + L1PA4 LINE L1 5612 6153 -2 * 23197 42 5 0 chrX 44158536 44162153 -132811987 + L1PA4 LINE L1 2527 6152 -3 1595 177 33 0 chrX 44162272 44162543 -132811597 + AluJo SINE Alu 2 281 -31 322 233 0 0 chrX 44162543 44162616 -132811524 - L1MC4 LINE L1 -1334 6708 6636 413 147 13 13 chrX 44162710 44162785 -132811355 - MADE1 DNA Mariner -5 75 1 2073 255 24 6 chrX 44162993 44163499 -132810641 + MLT2B2 LTR ERVL 1 515 0 4513 239 72 15 chrX 44163500 44164151 -132809989 + ERVL-B2 LTR ERVL 2 749 -5015 203 0 0 36 chrX 44164151 44164179 -132809961 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 4513 239 72 15 chrX 44164179 44164674 -132809466 + ERVL-B2 LTR ERVL 749 1214 -4550 11574 118 13 56 chrX 44164682 44166689 -132807451 + L1PA7 LINE L1 3 1931 -4530 19251 114 10 5 chrX 44166698 44170444 -132803696 + L1PA7 LINE L1 2715 6465 -4 3214 217 19 24 chrX 44170941 44171578 -132802562 + ERVL-B2 LTR ERVL 1206 1839 -3925 * 5616 192 6 1 chrX 44171574 44172548 -132801592 + ERVL-B2 LTR ERVL 2040 3018 -2746 542 223 0 9 chrX 44172548 44172660 -132801480 + ERVL LTR ERVL 5043 5153 -611 192 40 0 0 chrX 44174402 44174427 -132799713 + (TG)n Simple_repeat Simple_repeat 2 26 0 506 242 0 15 chrX 44175038 44175297 -132798843 + GA-rich Low_complexity Low_complexity 1 254 0 323 192 0 10 chrX 44179691 44179790 -132794350 + (TG)n Simple_repeat Simple_repeat 1 98 0 528 226 4 18 chrX 44180303 44180582 -132793558 + GA-rich Low_complexity Low_complexity 1 274 0 323 207 0 9 chrX 44184025 44184136 -132790004 + (TG)n Simple_repeat Simple_repeat 1 110 0 341 247 17 6 chrX 44184640 44184818 -132789322 + GA-rich Low_complexity Low_complexity 1 180 0 234 0 0 0 chrX 44186216 44186242 -132787898 + (A)n Simple_repeat Simple_repeat 1 26 0 13748 184 43 22 chrX 44186874 44191772 -132782368 + L1MA1 LINE L1 2562 6298 -4 390 175 0 26 chrX 44191781 44191865 -132782275 + MER21A LTR ERV1 1 83 -780 189 0 0 0 chrX 44191968 44191989 -132782151 + (TC)n Simple_repeat Simple_repeat 2 22 0 468 143 0 0 chrX 44191989 44192073 -132782067 + (TA)n Simple_repeat Simple_repeat 2 85 0 2972 164 63 131 chrX 44192074 44193001 -132781139 + MER21A LTR ERV1 82 904 -27 1401 227 65 20 chrX 44193078 44193527 -132780613 + L1MC4 LINE L1 7574 8042 0 411 240 35 29 chrX 44193530 44193701 -132780439 - Charlie2a DNA MER1_type -1714 1148 977 22 0 0 0 chrX 44194693 44194715 -132779425 + AT_rich Low_complexity Low_complexity 1 22 0 1944 132 14 3 chrX 44194723 44195018 -132779122 + AluSx SINE Alu 1 298 -14 522 278 137 14 chrX 44196232 44196444 -132777696 + MIR SINE MIR 1 238 -24 1363 193 0 33 chrX 44198835 44199172 -132774968 - pTR5 LTR ERV1 -1371 1067 742 279 202 0 0 chrX 44199986 44200070 -132774070 + (TG)n Simple_repeat Simple_repeat 1 84 0 241 279 0 0 chrX 44200603 44200664 -132773476 + A-rich Low_complexity Low_complexity 3 63 0 502 228 0 12 chrX 44200664 44200835 -132773305 + GA-rich Low_complexity Low_complexity 3 171 0 195 42 0 0 chrX 44201754 44201778 -132772362 + (T)n Simple_repeat Simple_repeat 1 24 0 2797 189 80 17 chrX 44201975 44202635 -132771505 - Tigger7 DNA MER2_type -2 2585 2 1373 235 64 30 chrX 44202708 44203180 -132770960 - L1MC4 LINE L1 -124 7918 7431 1676 219 75 96 chrX 44203721 44204360 -132769780 - MLT1E2 LTR MaLR 0 626 1 185 317 0 17 chrX 44204456 44204516 -132769624 - L2 LINE L2 -23 3290 3232 801 360 153 10 chrX 44204815 44205149 -132768991 - L2 LINE L2 -460 2854 2569 1669 184 61 48 chrX 44205149 44205541 -132768599 - MLT2C1 LTR ERVL 0 397 1 801 360 153 10 chrX 44205541 44206134 -132768006 - L2 LINE L2 -745 2569 1794 488 243 117 15 chrX 44206757 44207082 -132767058 + L1M4 LINE L1 2843 3200 -2946 565 273 197 19 chrX 44207200 44207621 -132766519 + L1M4 LINE L1 3942 4437 -1709 598 255 204 5 chrX 44208081 44208297 -132765843 + MIR SINE MIR 4 262 0 1959 124 0 58 chrX 44208356 44208716 -132765424 - AluSx SINE Alu 0 341 1 191 328 168 23 chrX 44208940 44209071 -132765069 + L2 LINE L2 3122 3271 -1 2208 104 16 7 chrX 44209451 44209759 -132764381 - AluSq SINE Alu -2 311 1 521 203 68 25 chrX 44209986 44210149 -132763991 - L1MC5 LINE L1 -30 7931 7762 443 237 13 45 chrX 44211284 44211440 -132762700 + MER104 DNA Tc2 30 180 0 234 313 0 0 chrX 44211823 44211887 -132762253 + L2 LINE L2 3207 3270 -2 265 366 60 16 chrX 44211956 44212207 -132761933 - L2 LINE L2 -1007 2307 2046 934 213 46 32 chrX 44212215 44212431 -132761709 - MER20 DNA MER1_type 0 219 1 192 319 21 75 chrX 44212444 44212538 -132761602 + L2 LINE L2 2371 2459 -855 763 138 51 7 chrX 44212871 44213009 -132761131 - L1MB2 LINE L1 -9 6162 6019 2641 111 3 3 chrX 44213421 44213791 -132760349 - L1PB1 LINE L1 0 6151 5782 222 37 0 0 chrX 44213794 44213821 -132760319 + (CA)n Simple_repeat Simple_repeat 2 28 0 212 231 8 0 chrX 44213816 44213946 -132760194 + (TA)n Simple_repeat Simple_repeat 2 132 0 * 516 170 0 0 chrX 44213987 44214093 -132760047 + (TA)n Simple_repeat Simple_repeat 1 106 0 227 146 0 0 chrX 44214096 44214137 -132760003 - LTR66 LTR ERVL -175 435 395 308 276 35 0 chrX 44214144 44214231 -132759909 + L1MC4 LINE L1 6614 6703 -1339 344 169 13 0 chrX 44214234 44214311 -132759829 + (TA)n Simple_repeat Simple_repeat 1 78 0 298 289 0 0 chrX 44214329 44214471 -132759669 + (TA)n Simple_repeat Simple_repeat 1 142 0 3522 119 11 10 chrX 44214513 44215184 -132758956 - L1P5 LINE L1 -360 5791 5118 357 208 12 125 chrX 44215214 44215332 -132758808 - L1M4 LINE L1 -1000 5146 5051 2172 102 3 3 chrX 44215332 44215626 -132758514 - AluSp SINE Alu -19 294 1 357 208 12 125 chrX 44215626 44215675 -132758465 - L1M4 LINE L1 -1095 5051 4998 779 208 6 12 chrX 44216049 44216365 -132757775 + GA-rich Low_complexity Low_complexity 1 314 0 243 0 0 0 chrX 44217586 44217613 -132756527 + (A)n Simple_repeat Simple_repeat 1 27 0 251 252 0 9 chrX 44220811 44220918 -132753222 + (TG)n Simple_repeat Simple_repeat 2 107 0 360 94 0 0 chrX 44221451 44221504 -132752636 + (GGA)n Simple_repeat Simple_repeat 2 54 0 1213 216 38 50 chrX 44221628 44221896 -132752244 + MER20B DNA MER1_type 301 566 -217 1930 159 3 0 chrX 44221896 44222192 -132751948 - AluJb SINE Alu -15 297 1 1213 216 38 50 chrX 44222192 44222265 -132751875 + MER20B DNA MER1_type 566 638 -145 964 316 138 28 chrX 44222443 44223221 -132750919 + L2 LINE L2 1891 2753 -561 1175 214 27 8 chrX 44223756 44224018 -132750122 - L1ME3 LINE L1 -2 6160 5894 321 197 0 0 chrX 44224023 44224084 -132750056 - L1PA16 LINE L1 -9 6157 6097 3779 136 7 5 chrX 44224096 44224684 -132749456 - L1PA16 LINE L1 -162 6004 5416 2244 112 3 6 chrX 44224839 44225152 -132748988 - AluSx SINE Alu 0 312 1 299 388 137 8 chrX 44225351 44225606 -132748534 - L2 LINE L2 -8 3264 2977 910 297 84 70 chrX 44225614 44226439 -132747701 - L2 LINE L2 -952 2362 1527 2478 198 57 56 chrX 44226440 44227206 -132746934 + L1M4 LINE L1 2499 3268 -2878 8175 29 0 0 chrX 44227206 44228543 -132745597 + L1PA3 LINE L1 4822 6152 -3 2478 198 57 56 chrX 44228543 44228564 -132745576 + L1M4 LINE L1 3268 3287 -2859 25 0 0 0 chrX 44228566 44228591 -132745549 + AT_rich Low_complexity Low_complexity 1 25 0 1592 162 38 0 chrX 44228924 44229190 -132744950 + AluSx SINE Alu 1 276 -36 222 37 0 0 chrX 44229196 44229223 -132744917 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 260 157 24 36 chrX 44229897 44229980 -132744160 + GA-rich Low_complexity Low_complexity 1 82 0 1898 143 65 3 chrX 44230294 44230587 -132743553 + AluSx SINE Alu 2 312 0 2314 104 7 0 chrX 44232645 44232954 -132741186 + AluSp SINE Alu 1 311 -2 353 243 13 13 chrX 44234455 44234607 -132739533 + CT-rich Low_complexity Low_complexity 2 153 0 246 182 0 0 chrX 44235091 44235157 -132738983 + (CA)n Simple_repeat Simple_repeat 1 66 0 180 0 0 0 chrX 44236944 44236964 -132737176 + (A)n Simple_repeat Simple_repeat 1 20 0 12655 196 87 13 chrX 44237110 44238420 -132735720 - L1PBa LINE L1 -1101 5761 4548 1940 130 0 14 chrX 44238420 44238822 -132735318 - AluSg SINE Alu 0 398 1 12655 196 87 13 chrX 44238822 44240446 -132733694 - L1PBa LINE L1 -2314 4548 3044 209 32 0 32 chrX 44240446 44240477 -132733663 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 12655 196 87 13 chrX 44240477 44242879 -132731261 - L1PBa LINE L1 -3818 3044 3 15347 198 40 12 chrX 44242890 44243237 -132730903 - L1P LINE L1 -746 5400 5064 2319 127 39 33 chrX 44243237 44243599 -132730541 - THE1B LTR MaLR 0 364 1 15347 198 40 12 chrX 44243599 44244895 -132729245 - L1P LINE L1 -1082 5064 3805 255 31 0 0 chrX 44244895 44244927 -132729213 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 15347 198 40 12 chrX 44244927 44246630 -132727510 - L1P LINE L1 -2341 3805 1962 812 217 26 20 chrX 44246625 44246777 -132727363 - L1PA13 LINE L1 -5425 1362 1210 * 1154 231 68 3 chrX 44246777 44247085 -132727055 - LTR37B LTR ERV1 -108 360 33 1252 249 142 34 chrX 44247546 44248004 -132726136 - MLT1F1 LTR MaLR -42 525 22 1695 163 45 6 chrX 44248125 44248457 -132725683 - L1MA7 LINE L1 -4 6287 5943 330 285 144 30 chrX 44248472 44248805 -132725335 + L1ME LINE L1 5400 5770 -351 * 4291 258 35 63 chrX 44248794 44249851 -132724289 + L1PA11 LINE L1 1 1086 -6498 4354 107 15 7 chrX 44249851 44250457 -132723683 - L1PB1 LINE L1 -2 6149 5539 4291 258 35 63 chrX 44250457 44251694 -132722446 + L1PA11 LINE L1 1086 3313 -4271 10027 181 67 8 chrX 44251737 44252899 -132721241 + L1PA11 LINE L1 3583 4675 -2937 210 118 0 0 chrX 44252899 44252933 -132721207 + (A)n Simple_repeat Simple_repeat 1 34 0 10027 181 67 8 chrX 44252933 44253732 -132720408 + L1PA11 LINE L1 4675 5425 -2187 1982 142 6 22 chrX 44253732 44254043 -132720097 + AluSg SINE Alu 1 306 -4 10027 181 67 8 chrX 44254043 44255783 -132718357 + L1PA11 LINE L1 5425 7611 -1 5939 103 14 26 chrX 44255798 44256659 -132717481 + L1P3 LINE L1 2 852 -5609 11349 97 7 4 chrX 44256684 44258278 -132715862 - L1P LINE L1 -879 5267 3670 330 227 220 21 chrX 44258280 44258421 -132715719 + MIR SINE MIR 94 262 0 310 317 99 46 chrX 44258749 44259191 -132714949 + L2 LINE L2 2068 2977 -337 44101 30 21 1 chrX 44259289 44265321 -132708819 - L1HS LINE L1 0 6155 1 391 262 0 0 chrX 44265432 44265516 -132708624 + L2 LINE L2 3230 3313 0 2589 168 19 5 chrX 44266029 44266452 -132707688 + MSTB1 LTR MaLR 4 432 0 184 338 40 27 chrX 44266459 44266533 -132707607 + L2 LINE L2 2875 2949 -323 231 171 0 0 chrX 44266625 44266660 -132707480 + U2 snRNA snRNA 1 35 -153 310 376 8 8 chrX 44266772 44266897 -132707243 - L2 LINE L2 -191 3081 2957 1863 168 0 0 chrX 44267110 44267396 -132706744 - AluSx SINE Alu -26 286 1 328 328 164 23 chrX 44267462 44267981 -132706159 - L2 LINE L2 -1107 2207 1616 428 227 73 55 chrX 44268028 44268138 -132706002 + L2 LINE L2 3187 3298 -15 260 143 18 0 chrX 44268189 44268245 -132705895 + (TG)n Simple_repeat Simple_repeat 2 58 0 339 336 82 0 chrX 44268293 44268439 -132705701 - HAL1 LINE L1 -932 1575 1418 2624 121 3 3 chrX 44268444 44268815 -132705325 - L1PB2 LINE L1 -2 6149 5779 4176 155 8 51 chrX 44268815 44269310 -132704830 - L1PB2 LINE L1 -232 5919 5404 2061 151 3 3 chrX 44269310 44269622 -132704518 - AluSx SINE Alu 0 312 1 4176 155 8 51 chrX 44269622 44270400 -132703740 - L1PB2 LINE L1 -747 5404 4694 792 206 35 6 chrX 44270400 44270570 -132703570 - MIR SINE MIR -87 175 1 249 57 0 0 chrX 44271002 44271037 -132703103 + (TC)n Simple_repeat Simple_repeat 2 36 0 1497 233 11 3 chrX 44271759 44272124 -132702016 - L1MA9 LINE L1 -9 6303 5936 23307 147 86 75 chrX 44272146 44277316 -132696824 + L1PA8A LINE L1 7 5238 -893 2168 130 7 3 chrX 44277316 44277624 -132696516 + AluSx SINE Alu 1 309 -3 23307 147 86 75 chrX 44277624 44277863 -132696277 + L1PA8A LINE L1 5238 5473 -658 25 0 0 0 chrX 44277881 44277906 -132696234 + AT_rich Low_complexity Low_complexity 1 25 0 1104 187 0 120 chrX 44277906 44278206 -132695934 + L1 LINE L1 3806 4069 -2077 * 4709 160 23 4 chrX 44278194 44278434 -132695706 - L1PA15 LINE L1 -2 6163 5924 1524 248 46 22 chrX 44278434 44279219 -132694921 - L1MB7 LINE L1 -259 5925 4632 4143 148 21 18 chrX 44279227 44279907 -132694233 - THE1-int LTR MaLR -38 1542 861 1970 194 39 29 chrX 44279907 44280455 -132693685 + MLT2A2 LTR ERVL 1 554 0 3765 165 4 6 chrX 44280455 44281354 -132692786 + HERVL-A2 LTR ERVL 1 966 -4688 35097 113 15 15 chrX 44281354 44287503 -132686637 - L1PA7 LINE L1 0 6154 11 762 90 0 0 chrX 44287513 44287624 -132686516 + HERVL-A2 LTR ERVL 956 1066 -4588 * 25555 166 36 15 chrX 44287621 44289129 -132685011 + HERVL-A2 LTR ERVL 1193 2668 -3096 2069 104 36 19 chrX 44289129 44289437 -132684703 + AluSp SINE Alu 1 313 0 25555 166 36 15 chrX 44289437 44292333 -132681807 + HERVL-A2 LTR ERVL 2668 5757 -7 1952 185 43 35 chrX 44292333 44292881 -132681259 + MLT2A2 LTR ERVL 1 553 -1 3865 216 31 32 chrX 44292882 44293940 -132680200 - L1PA15 LINE L1 -820 5326 4270 1254 275 29 16 chrX 44293950 44294462 -132679678 - L1PA15 LINE L1 -2948 3198 2680 2071 206 5 14 chrX 44294468 44294836 -132679304 + L1PA12 LINE L1 998 1362 -6219 2524 137 5 8 chrX 44294836 44295208 -132678932 - THE1C LTR MaLR 0 375 5 7198 138 56 25 chrX 44295212 44296399 -132677741 - THE1C-int LTR MaLR 0 1580 358 1983 59 0 0 chrX 44296399 44296653 -132677487 + L1PA5 LINE L1 3674 3927 -2219 7588 54 7 0 chrX 44296653 44298295 -132675845 + L1PA5 LINE L1 4508 6152 -2 2389 126 30 0 chrX 44298298 44298662 -132675478 - THE1C-int LTR MaLR -1205 375 1 1291 159 222 99 chrX 44298662 44298736 -132675404 - THE1C LTR MaLR 0 375 311 1981 132 7 0 chrX 44298736 44299023 -132675117 + AluSq SINE Alu 1 289 -24 1291 159 222 99 chrX 44299023 44299282 -132674858 - THE1C LTR MaLR -64 311 1 11203 186 29 8 chrX 44299282 44300874 -132673266 + L1PA12 LINE L1 1088 2741 -4843 204 40 0 0 chrX 44300874 44300899 -132673241 + (TA)n Simple_repeat Simple_repeat 1 25 0 11203 186 29 8 chrX 44300899 44301536 -132672604 + L1PA12 LINE L1 2741 3363 -4221 10227 142 28 17 chrX 44301539 44303522 -132670618 + L1PA14 LINE L1 1124 3143 -4441 4779 90 17 1 chrX 44303525 44304183 -132669957 + L1PA8 LINE L1 5505 6172 0 6655 93 0 1 chrX 44304184 44305308 -132668832 + L1PA8 LINE L1 5043 6166 -6 675 240 41 45 chrX 44305309 44305576 -132668564 + L1PA14 LINE L1 3352 3617 -3967 19005 218 24 17 chrX 44305589 44311238 -132662902 + L1PA11 LINE L1 9 6761 -823 1949 152 0 3 chrX 44311238 44311550 -132662590 + AluSg SINE Alu 1 310 0 19005 218 24 17 chrX 44311550 44311613 -132662527 + L1PA11 LINE L1 6761 6822 -762 14290 50 1 0 chrX 44311629 44313514 -132660626 - L1P LINE L1 -2987 3159 1274 7525 30 3 0 chrX 44313514 44314752 -132659388 + L1PA3 LINE L1 4912 6152 -3 4444 124 15 1 chrX 44314753 44315465 -132658675 + L1PA11 LINE L1 6822 7543 -69 10718 224 19 28 chrX 44315608 44317273 -132656867 + L1PA14 LINE L1 3609 5238 -2346 1846 176 0 13 chrX 44317273 44317579 -132656561 + AluSx SINE Alu 1 302 -10 10718 224 19 28 chrX 44317579 44318920 -132655220 + L1PA14 LINE L1 5238 6589 -995 40538 55 1 1 chrX 44318970 44325125 -132649015 - L1PA3 LINE L1 -3 6152 1 948 139 20 2 chrX 44325126 44325409 -132648731 + L1PA14 LINE L1 6578 6865 -734 40175 58 3 1 chrX 44325413 44331555 -132642585 + L1PA4 LINE L1 2 6152 -3 4332 135 20 12 chrX 44331565 44332308 -132641832 + L1PA14 LINE L1 6851 7599 0 3790 255 40 17 chrX 44332316 44333708 -132640432 - L1P3 LINE L1 -3453 3008 1592 195 42 0 0 chrX 44333960 44333984 -132640156 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 258 375 100 0 chrX 44334013 44334093 -132640047 - L2 LINE L2 -51 3221 3134 547 245 112 116 chrX 44334292 44334501 -132639639 + MLT1J LTR MaLR 1 209 -302 2006 145 3 0 chrX 44334501 44334798 -132639342 + AluSx SINE Alu 6 303 -9 547 245 112 116 chrX 44334798 44335069 -132639071 + MLT1J LTR MaLR 209 479 -32 7895 115 19 0 chrX 44335118 44337147 -132636993 - L1PA8A LINE L1 -21 6110 4046 248 88 0 0 chrX 44337193 44337227 -132636913 - U2 snRNA snRNA -152 36 3 911 221 0 33 chrX 44337393 44337644 -132636496 + AluJb SINE Alu 107 312 0 189 316 73 93 chrX 44338595 44338842 -132635298 + L2 LINE L2 2580 2821 -493 457 265 93 7 chrX 44338859 44339063 -132635077 - MIR SINE MIR 0 262 2 325 307 22 22 chrX 44339365 44339502 -132634638 - MIR SINE MIR 0 262 126 725 218 109 21 chrX 44339958 44340151 -132633989 + MIR SINE MIR 49 258 -4 210 191 0 0 chrX 44341939 44341981 -132632159 + CT-rich Low_complexity Low_complexity 4 45 0 21 36 0 0 chrX 44342358 44342386 -132631754 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chrX 44343017 44343055 -132631085 + (T)n Simple_repeat Simple_repeat 1 38 0 493 158 0 11 chrX 44343107 44343202 -132630938 + MER4C LTR ERV1 1 94 -371 6204 77 7 0 chrX 44343202 44344098 -132630042 + L1PA8A LINE L1 5203 6103 -28 337 109 0 0 chrX 44344118 44344173 -132629967 + MER4C LTR ERV1 79 133 -332 2201 209 89 86 chrX 44344193 44344796 -132629344 + LTR28 LTR ERV1 30 689 -331 3977 100 8 45 chrX 44344796 44345425 -132628715 + LTR14B LTR ERVK 3 608 0 2201 209 89 86 chrX 44345425 44345754 -132628386 + LTR28 LTR ERV1 689 1015 -5 1989 142 3 6 chrX 44345758 44346088 -132628052 + MER4C LTR ERV1 135 463 -2 500 356 45 75 chrX 44346135 44346511 -132627629 - L2 LINE L2 -12 3260 2896 230 338 149 5 chrX 44346840 44347062 -132627078 - MLT1L LTR MaLR -7 608 355 494 303 28 63 chrX 44347267 44347551 -132626589 - MLT1L LTR MaLR -341 274 1 549 0 0 0 chrX 44347689 44347750 -132626390 + (TA)n Simple_repeat Simple_repeat 2 62 0 470 31 16 0 chrX 44347753 44347817 -132626323 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 255 103 0 0 chrX 44347878 44347917 -132626223 + (CA)n Simple_repeat Simple_repeat 2 40 0 456 56 28 14 chrX 44347965 44348037 -132626103 + L1PA11 LINE L1 6102 6174 0 4468 155 35 5 chrX 44348043 44348895 -132625245 + Tigger3(Golem) DNA MER2_type 2151 3028 -1 3285 203 59 44 chrX 44348896 44349258 -132624882 - L1MC1 LINE L1 -141 6192 5837 1915 106 70 40 chrX 44349258 44349559 -132624581 - AluSg SINE Alu 0 310 1 3285 203 59 44 chrX 44349559 44350091 -132624049 - L1MC1 LINE L1 -496 5837 5284 * 4142 173 60 15 chrX 44350088 44351017 -132623123 - L1MA4A LINE L1 -5 6298 5328 1669 176 158 13 chrX 44351023 44351397 -132622743 + MSTA LTR MaLR 1 428 0 4691 149 2 54 chrX 44351399 44352310 -132621830 + MSTA-int LTR MaLR 3 866 -714 1388 252 44 24 chrX 44352310 44352850 -132621290 - MLT2A2 LTR ERVL -1 553 1 4386 132 14 12 chrX 44352850 44353569 -132620571 + MSTA-int LTR MaLR 861 1580 0 1304 202 151 14 chrX 44353580 44353932 -132620208 + MSTA LTR MaLR 29 428 0 1006 221 47 0 chrX 44353936 44354237 -132619903 - L1M LINE L1 -849 5297 5007 1368 238 29 47 chrX 44354240 44354728 -132619412 - L1MA4A LINE L1 -1617 4529 4051 2188 224 5 2 chrX 44354747 44355193 -132618947 + L1PA13 LINE L1 5 451 -6336 2799 187 31 18 chrX 44355250 44356378 -132617762 - L1M1 LINE L1 -556 5748 4599 2728 186 41 26 chrX 44356624 44357181 -132616959 + LTR39 LTR ERV1 1 609 -174 2113 130 7 0 chrX 44357181 44357482 -132616658 - AluSq SINE Alu -10 303 1 2728 186 41 26 chrX 44357482 44357603 -132616537 + LTR39 LTR ERV1 609 726 -57 2549 83 11 0 chrX 44357603 44357954 -132616186 + THE1A LTR MaLR 1 355 0 11246 107 11 1 chrX 44357954 44359518 -132614622 + THE1A-int LTR MaLR 1 1580 0 2324 116 6 3 chrX 44359518 44359872 -132614268 + THE1A LTR MaLR 1 355 0 244 276 0 0 chrX 44359872 44359930 -132614210 + LTR39 LTR ERV1 726 783 0 1264 234 48 63 chrX 44359954 44360411 -132613729 - MLT1E2 LTR MaLR -104 522 73 560 265 31 26 chrX 44360412 44360673 -132613467 - LTR24B LTR ERV1 0 569 206 288 200 14 29 chrX 44360819 44360889 -132613251 - LTR24B LTR ERV1 -499 77 9 253 203 68 14 chrX 44360898 44360972 -132613168 - MLT1E2 LTR MaLR -427 78 1 360 0 0 0 chrX 44361206 44361246 -132612894 + (CA)n Simple_repeat Simple_repeat 2 41 0 544 296 27 32 chrX 44361297 44361483 -132612657 + MIR SINE MIR 68 252 -10 733 248 68 56 chrX 44361721 44362043 -132612097 - L1MCb LINE L1 -5301 744 419 226 167 0 0 chrX 44362062 44362110 -132612030 - L1PA16 LINE L1 -1 6165 6118 428 167 0 0 chrX 44362139 44362217 -132611923 - L1P4 LINE L1 -442 5724 5647 597 173 87 16 chrX 44362218 44362345 -132611795 - MER4D LTR ERV1 -1 871 736 1276 190 27 11 chrX 44362345 44362608 -132611532 - L1PA16 LINE L1 -75 6091 5825 380 160 27 13 chrX 44362610 44362685 -132611455 + L1P4 LINE L1 5574 5649 -517 1569 147 13 20 chrX 44362693 44362993 -132611147 + MER4D LTR ERV1 8 305 -598 27077 120 25 64 chrX 44363006 44365747 -132608393 + L1PA7 LINE L1 12 2859 -3295 243 0 0 0 chrX 44365747 44365774 -132608366 + (TA)n Simple_repeat Simple_repeat 2 28 0 27077 120 25 64 chrX 44365774 44369429 -132604711 + L1PA7 LINE L1 2859 6147 -7 4906 152 18 8 chrX 44369429 44370456 -132603684 + L1PA15 LINE L1 5128 6164 -1 248 300 67 48 chrX 44370789 44371222 -132602918 + L1MC/D LINE L1 3718 4158 -1988 486 317 51 48 chrX 44371229 44371522 -132602618 + L1MC/D LINE L1 4298 4591 -1555 299 281 103 27 chrX 44371533 44371822 -132602318 + L1MC/D LINE L1 5488 5801 -531 7960 181 41 8 chrX 44371980 44373458 -132600682 + L1PA16 LINE L1 331 1856 -4993 41634 43 1 2 chrX 44373461 44379614 -132594526 + L1PA3 LINE L1 7 6155 0 11467 201 27 21 chrX 44379609 44381804 -132592336 + L1PA16 LINE L1 1838 4019 -2850 * 2302 111 0 0 chrX 44381804 44382111 -132592029 + AluSg SINE Alu 1 307 -3 11467 201 27 21 chrX 44382111 44384907 -132589233 + L1PA16 LINE L1 4019 6863 -6 1765 123 0 83 chrX 44384936 44385260 -132588880 + AluSx SINE Alu 1 297 -15 21 0 0 0 chrX 44385315 44385336 -132588804 + AT_rich Low_complexity Low_complexity 1 21 0 6142 173 48 22 chrX 44385433 44386797 -132587343 + L1MC3 LINE L1 5686 7085 -700 238 276 31 10 chrX 44386797 44386895 -132587245 + MLT1F1 LTR MaLR 24 123 -444 1655 173 83 32 chrX 44386896 44387204 -132586936 + L1MC3 LINE L1 7403 7694 -301 1872 155 26 3 chrX 44387204 44387508 -132586632 + AluJb SINE Alu 1 311 -1 1655 173 83 32 chrX 44387508 44387702 -132586438 + L1MC3 LINE L1 7694 7995 0 1213 196 29 25 chrX 44387714 44387959 -132586181 + AluJo SINE Alu 1 246 -66 1484 309 149 35 chrX 44388836 44389414 -132584726 - L3 LINE CR1 -11 1566 1055 2452 70 3 0 chrX 44389414 44389716 -132584424 + AluSg1 SINE Alu 1 303 -6 1484 309 149 35 chrX 44389716 44390155 -132583985 - L3 LINE CR1 -522 1055 433 604 241 48 48 chrX 44390559 44390746 -132583394 + MIR SINE MIR 2 188 -74 219 353 88 15 chrX 44390792 44390928 -132583212 - L3 LINE CR1 -1210 367 222 1904 135 0 25 chrX 44391344 44391625 -132582515 - AluSx SINE Alu -38 274 1 360 180 48 132 chrX 44393003 44393170 -132580970 + MER103 DNA DNA 2 154 -12 312 332 114 19 chrX 44393241 44393452 -132580688 + L1ME4a LINE L1 4066 4296 -1850 331 276 61 37 chrX 44393681 44393844 -132580296 + L1ME4a LINE L1 4559 4725 -1421 25 0 0 0 chrX 44394190 44394215 -132579925 + AT_rich Low_complexity Low_complexity 1 25 0 412 252 16 31 chrX 44395106 44395233 -132578907 + GA-rich Low_complexity Low_complexity 3 127 0 21 36 0 0 chrX 44397210 44397238 -132576902 + GC_rich Low_complexity Low_complexity 1 28 0 233 163 20 0 chrX 44397631 44397680 -132576460 + L1ME4a LINE L1 5131 5180 -966 * 275 303 10 10 chrX 44397673 44397772 -132576368 + GA-rich Low_complexity Low_complexity 1 99 0 449 302 97 49 chrX 44397897 44398411 -132575729 + L1ME4a LINE L1 5264 5802 -319 25 31 0 0 chrX 44398536 44398568 -132575572 + AT_rich Low_complexity Low_complexity 1 32 0 288 254 0 77 chrX 44398588 44398718 -132575422 + L1ME4a LINE L1 5947 6066 -55 27 0 0 0 chrX 44399136 44399163 -132574977 + AT_rich Low_complexity Low_complexity 1 27 0 374 43 0 0 chrX 44399233 44399280 -132574860 - MADE1 DNA Mariner 0 80 34 481 18 0 0 chrX 44399300 44399356 -132574784 - MADE1 DNA Mariner -24 56 1 293 214 0 18 chrX 44399778 44399834 -132574306 + MER5A DNA MER1_type 46 100 -89 215 253 121 22 chrX 44399782 44399873 -132574267 - MER5A DNA MER1_type -39 150 51 * 1233 195 41 49 chrX 44400658 44400925 -132573215 + AluJb SINE Alu 1 265 -47 264 196 0 0 chrX 44401058 44401104 -132573036 + AluSp/q SINE Alu 223 268 -35 442 302 130 32 chrX 44401285 44401623 -132572517 + L1ME LINE L1 4990 5360 -786 253 283 0 0 chrX 44401623 44401683 -132572457 + GA-rich Low_complexity Low_complexity 4 63 0 501 274 139 35 chrX 44401793 44401994 -132572146 + MIR SINE MIR 41 262 0 292 283 28 62 chrX 44402021 44402166 -132571974 + L1ME LINE L1 5524 5663 -458 447 267 41 35 chrX 44402309 44402481 -132571659 + MIR SINE MIR 6 178 -84 622 296 49 18 chrX 44402887 44403113 -132571027 + MER102b DNA MER1_type 95 327 -14 647 158 8 33 chrX 44403256 44403424 -132570716 + FLAM_C SINE Alu 1 165 0 372 22 0 0 chrX 44403525 44403570 -132570570 + (ATG)n Simple_repeat Simple_repeat 1 45 0 1510 206 69 95 chrX 44404395 44404716 -132569424 + Charlie2 DNA MER1_type 2049 2377 -485 2351 135 15 8 chrX 44404716 44405117 -132569023 - L1MA5 LINE L1 -1 6299 5896 1510 206 69 95 chrX 44405117 44405448 -132568692 + Charlie2 DNA MER1_type 2377 2681 -181 2658 129 24 9 chrX 44405448 44405874 -132568266 - MER57B LTR ERV1 0 434 3 1510 206 69 95 chrX 44405874 44405985 -132568155 + Charlie2 DNA MER1_type 2681 2793 -69 642 217 105 0 chrX 44408219 44408362 -132565778 - MIR SINE MIR -65 197 40 1200 235 88 9 chrX 44408502 44408830 -132565310 - L1ME3A LINE L1 -10 6160 5807 2498 138 44 5 chrX 44408956 44409368 -132564772 + MSTA LTR MaLR 1 428 0 487 354 28 5 chrX 44409408 44409620 -132564520 + MIR SINE MIR 39 255 -7 761 284 73 8 chrX 44409977 44410347 -132563793 - L2 LINE L2 -1134 2180 1787 22963 117 8 10 chrX 44410387 44413916 -132560224 - L1P LINE L1 -2621 3525 4 2033 84 0 3 chrX 44413908 44414192 -132559948 - L1M1 LINE L1 -499 7222 6940 * 2371 135 5 3 chrX 44414192 44414563 -132559577 + THE1C LTR MaLR 1 372 -3 9553 126 28 34 chrX 44414566 44416114 -132558026 + THE1C-int LTR MaLR 1 1538 -42 2281 162 3 5 chrX 44416132 44416503 -132557637 + THE1C LTR MaLR 1 370 -5 19292 176 30 18 chrX 44416505 44420549 -132553591 - L1M1 LINE L1 -743 6822 2825 4461 39 2 0 chrX 44420549 44421090 -132553050 - L1PA4 LINE L1 -1 6154 5613 19292 176 30 18 chrX 44421090 44421727 -132552413 - L1M1 LINE L1 -4740 2825 2197 1693 130 4 4 chrX 44421727 44422023 -132552117 - AluSc SINE Alu 0 329 34 19292 176 30 18 chrX 44422023 44424205 -132549935 - L1M1 LINE L1 -5368 2197 2 1008 206 0 22 chrX 44424175 44424398 -132549742 - L1MA5 LINE L1 -301 7418 7201 * 25 31 0 0 chrX 44424399 44424431 -132549709 + AT_rich Low_complexity Low_complexity 1 32 0 5177 177 46 7 chrX 44424445 44425522 -132548618 - L1MA5 LINE L1 -935 6630 5512 1451 199 0 64 chrX 44425951 44426262 -132547878 - AluJo SINE Alu -21 291 1 198 320 64 0 chrX 44426309 44426387 -132547753 + L3 LINE CR1 1485 1567 -10 209 211 22 133 chrX 44426462 44426552 -132547588 - MIR3 SINE MIR -18 190 111 1586 210 107 107 chrX 44426639 44427258 -132546882 - MLT1E2 LTR MaLR -3 623 3 487 256 71 98 chrX 44427353 44427607 -132546533 + MIR SINE MIR 16 262 0 237 294 62 62 chrX 44427664 44427810 -132546330 + L2 LINE L2 3168 3313 0 2086 92 50 4 chrX 44428370 44428651 -132545489 + AluSx SINE Alu 1 294 -18 1935 141 3 10 chrX 44429284 44429583 -132544557 + AluSx SINE Alu 1 297 -15 600 330 70 18 chrX 44430288 44430573 -132543567 + L2 LINE L2 3014 3313 0 640 259 54 32 chrX 44430885 44431070 -132543070 + MIR SINE MIR 20 208 -54 1897 111 32 11 chrX 44431369 44431648 -132542492 - AluSq SINE Alu -8 305 21 453 283 21 28 chrX 44431778 44431923 -132542217 - MIR SINE MIR 0 262 119 183 333 0 67 chrX 44432790 44432865 -132541275 - L3 LINE CR1 -1050 527 458 737 226 54 10 chrX 44433122 44433326 -132540814 + L1M4 LINE L1 3777 3989 -2157 2206 251 69 0 chrX 44433635 44434301 -132539839 + L1M4 LINE L1 3980 4691 -1455 478 287 27 20 chrX 44434388 44434538 -132539602 - MIR SINE MIR -79 183 33 14580 42 4 2 chrX 44434726 44436545 -132537595 - L1P1 LINE L1 -3215 2931 1109 * 19799 39 1 0 chrX 44436541 44439272 -132534868 + L1P1 LINE L1 2922 5654 -501 431 246 16 0 chrX 44439390 44439512 -132534628 - L1P LINE L1 -883 5263 5140 42148 61 5 1 chrX 44439513 44445639 -132528501 + L1PA7 LINE L1 1 6148 -6 4958 152 18 8 chrX 44445639 44446666 -132527474 + L1PA15 LINE L1 5128 6164 -1 248 300 67 48 chrX 44446999 44447432 -132526708 + L1MC/D LINE L1 3718 4158 -1988 486 317 51 48 chrX 44447439 44447732 -132526408 + L1MC/D LINE L1 4298 4591 -1555 299 281 103 27 chrX 44447743 44448032 -132526108 + L1MC/D LINE L1 5488 5801 -531 7960 181 41 8 chrX 44448190 44449668 -132524472 + L1PA15-16 LINE L1 331 1856 -4993 6745 82 9 12 chrX 44449671 44450678 -132523462 + L1P LINE L1 7 1010 -5136 7323 44 0 0 chrX 44450778 44452251 -132521889 + L1PA3 LINE L1 4683 6155 0 4429 166 19 0 chrX 44452252 44453071 -132521069 + L1P LINE L1 4067 4901 -1245 563 168 20 34 chrX 44453075 44453224 -132520916 + L1PA15-16 LINE L1 2768 2914 -3935 34778 102 6 6 chrX 44453241 44459388 -132514752 + L1PA6 LINE L1 14 6154 0 3698 199 22 5 chrX 44459386 44460251 -132513889 + L1PA15-16 LINE L1 2905 3784 -3065 * 1098 283 29 2 chrX 44460234 44460690 -132513450 + L1M4 LINE L1 2562 3029 -3117 * 614 238 31 44 chrX 44460692 44460852 -132513288 + MSTB LTR MaLR 4 161 -265 526 201 90 0 chrX 44460858 44460992 -132513148 + MSTB LTR MaLR 286 431 -1 38209 64 16 0 chrX 44462293 44468342 -132505798 + L1PA3 LINE L1 7 6155 0 11888 45 2 1 chrX 44468338 44470035 -132504105 + L1P2 LINE L1 3832 5530 -625 * 27 0 0 0 chrX 44470037 44470064 -132504076 + AT_rich Low_complexity Low_complexity 1 27 0 4868 49 3 0 chrX 44470179 44470814 -132503326 - L1PA3 LINE L1 -177 5978 5342 3570 98 0 0 chrX 44470822 44471323 -132502817 + L1PA4 LINE L1 7 507 -5639 1788 53 0 0 chrX 44471320 44471565 -132502575 - L1P LINE L1 -795 5351 5107 * 14008 49 2 0 chrX 44471566 44473404 -132500736 + L1P LINE L1 3272 5113 -1033 5076 52 2 2 chrX 44473404 44474032 -132500108 + L1PA4 LINE L1 5520 6152 -3 992 65 0 0 chrX 44475218 44475342 -132498798 - AluY SINE Alu -8 303 180 2228 100 3 7 chrX 44475416 44475716 -132498424 + AluSx SINE Alu 1 299 -13 2493 143 15 34 chrX 44476261 44476423 -132497717 - L1MA5 LINE L1 0 6300 6136 1701 179 0 43 chrX 44476423 44476725 -132497415 - AluJo SINE Alu -12 300 12 2493 143 15 34 chrX 44476725 44477039 -132497101 - L1MA5 LINE L1 -164 6136 5833 1765 228 70 15 chrX 44477226 44477733 -132496407 + L1MDb LINE L1 812 1357 -5049 2376 71 0 0 chrX 44477733 44478028 -132496112 + AluY SINE Alu 1 295 -16 1765 228 70 15 chrX 44478028 44478200 -132495940 + L1MDb LINE L1 1357 1518 -4888 5040 197 10 16 chrX 44478216 44479224 -132494916 + L1PA13 LINE L1 1112 2113 -4674 2164 154 9 5 chrX 44479222 44479824 -132494316 + L1PA13 LINE L1 1930 2543 -4254 * 6359 56 4 1 chrX 44479822 44480664 -132493476 - L1PA5 LINE L1 -3 6151 5308 335 162 0 15 chrX 44480664 44480732 -132493408 + L1PA13 LINE L1 2532 2598 -4199 * 562 220 15 25 chrX 44480721 44480910 -132493230 - L1M4 LINE L1 -975 5171 4983 2345 123 0 29 chrX 44480910 44481284 -132492856 - L1PA8A LINE L1 0 6131 5769 35057 51 4 1 chrX 44481284 44486726 -132487414 - L1PA3 LINE L1 -2 6153 702 36 0 0 0 chrX 44486877 44486913 -132487227 + AT_rich Low_complexity Low_complexity 1 36 0 28858 114 10 29 chrX 44486913 44491183 -132482957 - L1PA7 LINE L1 -7 6147 2020 326 22 0 0 chrX 44491183 44491228 -132482912 - L1PA2 LINE L1 0 6155 6111 28858 114 10 29 chrX 44491228 44492871 -132481269 - L1PA7 LINE L1 -4134 2020 348 2913 241 11 7 chrX 44492876 44493754 -132480386 - L1M4 LINE L1 -2091 4055 3171 180 0 0 0 chrX 44493754 44493774 -132480366 + (TG)n Simple_repeat Simple_repeat 1 20 0 2913 241 11 7 chrX 44493774 44493786 -132480354 - L1M4 LINE L1 -2975 3171 3161 * 4313 192 71 10 chrX 44493775 44495771 -132478369 - L1PBa LINE L1 -4597 2266 6 582 56 67 11 chrX 44495773 44495862 -132478278 - L1PBa LINE L1 -4437 2426 2333 3071 177 28 16 chrX 44495862 44496552 -132477588 - L1PBa LINE L1 -4920 1943 1101 4245 233 53 4 chrX 44496562 44497555 -132476585 - L1PBa LINE L1 -5816 1047 6 7717 167 17 68 chrX 44497572 44499771 -132474369 - L1M1 LINE L1 -690 7034 4960 751 162 0 7 chrX 44499769 44499905 -132474235 - L1M1 LINE L1 -7363 202 68 * 7584 224 27 20 chrX 44499919 44500478 -132473662 - L1M1 LINE L1 -4444 3121 2568 189 0 0 0 chrX 44500478 44500499 -132473641 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 243 0 0 0 chrX 44500498 44500525 -132473615 + (TG)n Simple_repeat Simple_repeat 2 28 0 7584 224 27 20 chrX 44500499 44502361 -132471779 - L1M1 LINE L1 -4997 2568 23 402 373 7 7 chrX 44503023 44503173 -132470967 - MIR SINE MIR -101 161 12 893 296 8 8 chrX 44503322 44503575 -132470565 + MIR SINE MIR 10 262 0 238 191 0 0 chrX 44504204 44504251 -132469889 + L1MA4A LINE L1 6234 6280 -23 1918 156 0 10 chrX 44504258 44504546 -132469594 + AluSq SINE Alu 1 285 -28 28 0 0 0 chrX 44504547 44504575 -132469565 + AT_rich Low_complexity Low_complexity 1 28 0 34981 101 21 9 chrX 44505378 44511437 -132462703 + L1PA6 LINE L1 2 6135 -19 192 77 0 0 chrX 44511437 44511463 -132462677 + (TA)n Simple_repeat Simple_repeat 1 26 0 19047 202 23 50 chrX 44512664 44515589 -132458551 + L1PA12 LINE L1 9 3010 -4574 257 0 30 0 chrX 44515589 44515622 -132458518 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2004 138 3 0 chrX 44515625 44515916 -132458224 - AluSx SINE Alu -20 292 1 19047 202 23 50 chrX 44515916 44518543 -132455597 + L1PA12 LINE L1 3012 6505 -1079 5952 170 66 11 chrX 44518643 44520744 -132453396 + L1PBa LINE L1 1763 3978 -2884 1741 158 3 4 chrX 44520873 44521195 -132452945 + L1M LINE L1 5023 5342 -815 189 261 0 0 chrX 44521198 44521244 -132452896 + L2 LINE L2 3268 3313 0 5468 112 15 11 chrX 44521317 44521476 -132452664 + L1PA11 LINE L1 5328 5485 -689 2751 16 0 0 chrX 44521476 44521781 -132452359 + AluYa5 SINE Alu 1 305 -6 5468 112 15 11 chrX 44521781 44522464 -132451676 + L1PA11 LINE L1 5485 6174 0 465 241 30 38 chrX 44522611 44522744 -132451396 + L2 LINE L2 3182 3313 0 515 294 131 32 chrX 44522954 44523206 -132450934 - L2 LINE L2 -1 3312 3036 627 239 92 14 chrX 44523409 44523666 -132450474 - L1MC4a LINE L1 -336 5842 5566 437 335 68 25 chrX 44523666 44524049 -132450091 + MLT1I LTR MaLR 3 407 -2 304 243 229 21 chrX 44525591 44525731 -132448409 + HAL1 LINE L1 821 989 -1518 1068 304 170 5 chrX 44526060 44526689 -132447451 + HAL1 LINE L1 1192 1924 -583 273 219 0 0 chrX 44526984 44527048 -132447092 + HAL1 LINE L1 2082 2145 -362 286 203 122 49 chrX 44527057 44527180 -132446960 + HAL1 LINE L1 2376 2507 0 886 217 28 0 chrX 44527587 44527767 -132446373 + L1MD2 LINE L1 26 210 -6330 1497 239 76 105 chrX 44527798 44528380 -132445760 + L1MD2 LINE L1 201 765 -5775 2870 262 57 19 chrX 44528385 44529874 -132444266 + L1MD2 LINE L1 3470 5050 -1490 1581 166 146 86 chrX 44529874 44529986 -132444154 + MLT1C LTR MaLR 1 105 -362 1999 142 0 0 chrX 44529986 44530281 -132443859 - AluSx SINE Alu 0 312 18 1581 166 146 86 chrX 44530281 44530409 -132443731 + MLT1C LTR MaLR 105 224 -243 1912 164 118 18 chrX 44530409 44530798 -132443342 - MSTA LTR MaLR 0 428 1 1581 166 146 86 chrX 44530798 44530996 -132443144 + MLT1C LTR MaLR 224 466 -1 3621 218 28 35 chrX 44531043 44531982 -132442158 + L1MD2 LINE L1 5071 5941 -695 2424 71 3 0 chrX 44531982 44532276 -132441864 + AluY SINE Alu 1 295 -16 3621 218 28 35 chrX 44532276 44532967 -132441173 + L1MD2 LINE L1 5941 6636 0 232 349 15 0 chrX 44532990 44533056 -132441084 + L2 LINE L2 3205 3271 -1 249 98 0 0 chrX 44533239 44533280 -132440860 + (CA)n Simple_repeat Simple_repeat 2 42 0 8339 177 50 4 chrX 44533735 44535307 -132438833 + L1PBa LINE L1 10 1654 -5209 1152 260 26 2 chrX 44535427 44535856 -132438284 + L1MD2 LINE L1 4964 5406 -758 2167 158 14 65 chrX 44535858 44536289 -132437851 - MLT2D LTR ERVL 0 414 6 3613 216 68 14 chrX 44536295 44537007 -132437133 + L1MD2 LINE L1 5404 6175 -184 300 53 0 0 chrX 44537007 44537045 -132437095 + (CA)n Simple_repeat Simple_repeat 2 39 0 3613 216 68 14 chrX 44537045 44537230 -132436910 + L1MD2 LINE L1 6175 6349 -10 339 333 0 0 chrX 44537237 44537324 -132436816 - MER5A DNA MER1_type -54 135 49 207 0 0 0 chrX 44537326 44537349 -132436791 + (CTG)n Simple_repeat Simple_repeat 1 23 0 383 335 62 6 chrX 44537487 44537666 -132436474 - MIR SINE MIR -21 241 53 355 296 132 26 chrX 44537765 44537917 -132436223 - MIR SINE MIR -18 244 77 * 474 300 15 0 chrX 44537905 44538035 -132436105 + L2 LINE L2 3182 3313 0 199 268 0 0 chrX 44538034 44538075 -132436065 - MIR SINE MIR -221 41 1 * 5167 179 38 12 chrX 44538934 44540930 -132433210 - L1MA4 LINE L1 -9 7710 5666 1569 193 24 17 chrX 44540942 44541442 -132432698 - L1MA4 LINE L1 -3650 3915 3411 3347 139 17 7 chrX 44541461 44542049 -132432091 - L1MA3 LINE L1 -1 6304 5711 1161 124 5 11 chrX 44542074 44542259 -132431881 - L1PB1 LINE L1 -3 6148 5965 24109 39 6 0 chrX 44742273 44746029 -132228111 + L1PA3 LINE L1 2373 6152 -3 3762 80 4 9 chrX 44746041 44746569 -132227571 + L1PA8 LINE L1 5641 6165 -7 401 362 85 30 chrX 44746738 44747009 -132227131 + HAL1b LINE L1 339 624 -724 193 109 43 0 chrX 44747061 44747107 -132227033 + (TA)n Simple_repeat Simple_repeat 2 49 0 1883 114 21 0 chrX 44747168 44747457 -132226683 - L1PA13 LINE L1 -2 6161 5867 484 115 81 0 chrX 44747460 44747547 -132226593 - L1PA13 LINE L1 -421 5747 5654 1107 126 0 0 chrX 44747566 44747776 -132226364 + (TA)n Simple_repeat Simple_repeat 1 210 0 7191 234 38 18 chrX 44747776 44749157 -132224983 - L1 LINE L1 -1818 4510 3157 10010 34 0 0 chrX 44749157 44751126 -132223014 - L1PA3 LINE L1 0 6155 4184 7191 234 38 18 chrX 44751126 44751861 -132222279 - L1 LINE L1 -3171 3157 2350 2335 145 11 3 chrX 44751861 44752240 -132221900 - L1PA11 LINE L1 -2 6172 5791 11017 169 19 10 chrX 44752249 44752665 -132221475 - L1PA11 LINE L1 -743 5403 4992 2280 98 0 13 chrX 44752665 44752980 -132221160 - AluY SINE Alu 0 311 1 11017 169 19 10 chrX 44752980 44754706 -132219434 - L1PA11 LINE L1 -1154 4992 3243 1916 181 56 5 chrX 44754689 44755081 -132219059 - L1 LINE L1 -4325 1003 592 * 2093 200 13 40 chrX 44755082 44755531 -132218609 - L1 LINE L1 -4853 475 39 316 230 22 4 chrX 44755524 44755623 -132218517 + L1ME2 LINE L1 5882 5972 -192 * 1152 223 12 0 chrX 44756056 44756303 -132217837 + L1PB4 LINE L1 5903 6152 -4 24 32 0 0 chrX 44756496 44756527 -132217613 + AT_rich Low_complexity Low_complexity 1 31 0 14850 66 2 1 chrX 44756847 44762857 -132211283 - L1PA4 LINE L1 -1 6154 38 1554 321 60 17 chrX 44763226 44763914 -132210226 + L2 LINE L2 1989 2705 -609 330 304 39 61 chrX 44764253 44764434 -132209706 + L2 LINE L2 2317 2493 -821 376 296 91 23 chrX 44764532 44764708 -132209432 - MER5A DNA MER1_type 0 189 2 181 367 102 31 chrX 44764804 44765030 -132209110 - L2 LINE L2 -803 2511 2270 2540 72 0 0 chrX 44765345 44765652 -132208488 - AluY SINE Alu 0 311 5 2313 202 78 64 chrX 44765866 44766589 -132207551 - MER31-int LTR ERV1 -1193 3743 3011 24 0 0 0 chrX 44766589 44766613 -132207527 + AT_rich Low_complexity Low_complexity 1 24 0 2133 200 24 4 chrX 44766655 44767115 -132207025 - L1MA8 LINE L1 -5 7246 6778 12351 184 75 41 chrX 44767128 44768491 -132205649 + L1M1 LINE L1 12 1327 -6238 2169 142 0 0 chrX 44768491 44768801 -132205339 + AluSg SINE Alu 1 310 0 12351 184 75 41 chrX 44768801 44769993 -132204147 + L1M1 LINE L1 1327 2654 -4911 611 184 31 49 chrX 44770061 44770224 -132203916 + L1M2 LINE L1 5319 5478 -813 * 4019 207 129 43 chrX 44770222 44771463 -132202677 - L1MA8 LINE L1 -830 6276 4929 503 256 78 36 chrX 44771432 44771741 -132202399 - L1MA8 LINE L1 -2438 4668 4347 * 2423 277 23 102 chrX 44771746 44773271 -132200869 - L1MA8 LINE L1 -5620 1410 7 1500 241 24 76 chrX 44773299 44773389 -132200751 - L1 LINE L1 -748 5398 5305 306 50 0 0 chrX 44773389 44773429 -132200711 + (TG)n Simple_repeat Simple_repeat 1 40 0 1500 241 24 76 chrX 44773429 44773919 -132200221 - L1 LINE L1 -841 5305 4848 3749 223 26 16 chrX 44773926 44774584 -132199556 + L1MA9 LINE L1 3357 4030 -2116 1717 183 131 11 chrX 44774584 44774966 -132199174 + MSTA LTR MaLR 1 428 0 3749 223 26 16 chrX 44774966 44775267 -132198873 + L1MA9 LINE L1 4030 4326 -1820 346 176 0 14 chrX 44775293 44775367 -132198773 + L1M LINE L1 5306 5378 -925 31113 110 12 14 chrX 44775380 44781639 -132192501 + L1PA7 LINE L1 12 6151 -3 3550 174 41 20 chrX 44781651 44782404 -132191736 + L1PB4 LINE L1 5387 6155 -1 1094 212 30 7 chrX 44782436 44782738 -132191402 + L1MA9 LINE L1 4372 4680 -1466 18032 198 24 20 chrX 44782747 44787353 -132186787 + L1MA2 LINE L1 20 4645 -2920 280 170 0 0 chrX 44787365 44787412 -132186728 - MLT1E3 LTR MaLR -577 47 1 9347 187 30 4 chrX 44787491 44790488 -132183652 + L1MA2 LINE L1 4637 7707 -16 3873 213 48 28 chrX 44790519 44791814 -132182326 + L1MA9 LINE L1 4675 5943 -369 2151 127 0 7 chrX 44791814 44792121 -132182019 + AluSx SINE Alu 3 307 -5 3873 213 48 28 chrX 44792121 44792256 -132181884 + L1MA9 LINE L1 5943 6074 -238 339 78 0 0 chrX 44792256 44792307 -132181833 + (CA)n Simple_repeat Simple_repeat 1 51 0 3873 213 48 28 chrX 44792307 44792442 -132181698 + L1MA9 LINE L1 6074 6274 -38 419 161 35 0 chrX 44792486 44792573 -132181567 + L1MA9 LINE L1 6223 6312 0 21 36 0 0 chrX 44792721 44792749 -132181391 + AT_rich Low_complexity Low_complexity 1 28 0 2532 99 5 29 chrX 44793120 44793503 -132180637 - THE1C LTR MaLR -1 374 1 334 75 0 19 chrX 44793503 44793556 -132180584 - THE1C-int LTR MaLR 0 1580 1529 347 160 0 0 chrX 44794003 44794053 -132180087 - 5S rRNA rRNA -71 50 1 1360 191 0 4 chrX 44794055 44794311 -132179829 + MLT2C2 LTR ERVL 3 257 -207 3244 201 15 99 chrX 44794311 44795165 -132178975 + MLT1A1-int LTR MaLR 954 1735 0 1139 207 50 92 chrX 44795165 44795546 -132178594 + MLT1A1 LTR MaLR 1 365 0 366 249 87 53 chrX 44795592 44795857 -132178283 + HAL1 LINE L1 1757 2030 -477 1933 176 0 3 chrX 44795929 44796242 -132177898 - AluSx SINE Alu 0 312 1 1159 241 5 81 chrX 44796369 44796764 -132177376 + MLT1A1 LTR MaLR 1 365 0 438 290 55 7 chrX 44796832 44796977 -132177163 - MIR SINE MIR -11 251 100 305 274 38 70 chrX 44797043 44797200 -132176940 + HAL1 LINE L1 2333 2484 -23 25 51 0 0 chrX 44797204 44797243 -132176897 + AT_rich Low_complexity Low_complexity 1 39 0 22 70 0 0 chrX 44798867 44798910 -132175230 + AT_rich Low_complexity Low_complexity 1 43 0 577 280 45 34 chrX 44799063 44799331 -132174809 + HAL1 LINE L1 1790 2060 -447 582 238 18 24 chrX 44799385 44799549 -132174591 - LTR52 LTR ERVL -258 163 1 583 252 0 0 chrX 44799549 44799672 -132174468 - LTR52-int LTR ERVL 0 3556 3434 * 629 231 0 0 chrX 44799664 44799781 -132174359 - LTR52-int LTR ERVL -52 3504 3388 38 0 0 0 chrX 44799849 44799887 -132174253 + AT_rich Low_complexity Low_complexity 1 38 0 1222 186 9 0 chrX 44799887 44800118 -132174022 - L1PB3 LINE L1 -5 6149 5917 2290 162 0 25 chrX 44800137 44800532 -132173608 + MER57B LTR ERV1 46 430 -4 650 261 27 42 chrX 44800552 44800815 -132173325 + MER57B-int LTR ERV1 3 299 -7238 9579 62 5 0 chrX 44800850 44802865 -132171275 - L1PA6 LINE L1 -3 6151 4132 279 200 64 91 chrX 44802921 44803031 -132171109 + MER57B-int LTR ERV1 813 919 -867 389 314 11 25 chrX 44804894 44805219 -132168921 + MER57-int LTR ERV1 158 3478 -4278 279 388 26 7 chrX 44805203 44805355 -132168785 + MER57-int LTR ERV1 2544 2698 -4103 * 311 351 0 0 chrX 44806447 44806541 -132167599 + MER57-int LTR ERV1 3784 3877 -2924 1735 238 2 53 chrX 44806635 44807126 -132167014 + MER57-int LTR ERV1 5285 5750 -1787 1021 274 43 63 chrX 44807097 44807988 -132166152 + MER57-int LTR ERV1 2097 6176 -1361 * 22 0 0 0 chrX 44808325 44808347 -132165793 + AT_rich Low_complexity Low_complexity 1 22 0 6916 68 12 2 chrX 44809194 44810795 -132163345 - L1PA6 LINE L1 0 6154 4548 2423 154 19 42 chrX 44811031 44811630 -132162510 - MER4E LTR ERV1 -9 757 1 12469 132 50 14 chrX 44811630 44813699 -132160441 - MER4E-int LTR ERV1 0 6758 4616 1935 178 11 0 chrX 44813700 44814049 -132160091 - MER4E-int LTR ERV1 -2982 3776 3424 * 3128 136 63 68 chrX 44814021 44814425 -132159715 - MER4E-int LTR ERV1 -3649 3109 2709 1869 132 21 3 chrX 44814425 44814714 -132159426 + AluSq SINE Alu 4 297 -16 3128 136 63 68 chrX 44814714 44815024 -132159116 - MER4E-int LTR ERV1 -4049 2709 2399 2494 88 0 0 chrX 44815026 44815367 -132158773 + L1PA7 LINE L1 3854 4194 -1952 382 59 0 0 chrX 44815364 44815415 -132158725 - L1PA6 LINE L1 -1064 5082 5032 * 6951 59 7 0 chrX 44815417 44816468 -132157672 + L1PA6 LINE L1 5086 6141 -13 420 105 0 0 chrX 44816523 44816580 -132157560 + L1PA8A LINE L1 6062 6118 -13 8565 90 38 0 chrX 44816586 44818523 -132155617 + L1PA7 LINE L1 4181 6151 -3 566 64 36 45 chrX 44818523 44818626 -132155514 - MER4B-int LTR ERV1 -4373 2385 2282 1952 162 0 10 chrX 44818626 44818935 -132155205 - AluSx SINE Alu -6 306 1 7320 161 23 7 chrX 44818935 44821314 -132152826 + L1MA2 LINE L1 3890 6304 0 270 278 35 52 chrX 44821352 44821525 -132152615 + HAL1 LINE L1 2212 2381 -126 582 152 0 10 chrX 44821723 44821822 -132152318 + MER4A LTR ERV1 1 98 -566 1754 140 21 20 chrX 44821831 44822167 -132151973 + MER4A LTR ERV1 270 664 0 341 287 10 30 chrX 44822258 44822359 -132151781 - L2 LINE L2 -272 3041 2943 321 325 50 19 chrX 44822405 44822565 -132151575 + MIR SINE MIR 8 172 -90 603 153 22 38 chrX 44823016 44823160 -132150980 + MER51C LTR ERV1 1 183 -457 4277 129 8 0 chrX 44823168 44823803 -132150337 + MER51C LTR ERV1 1 640 0 21 57 0 0 chrX 44823917 44823952 -132150188 + AT_rich Low_complexity Low_complexity 1 35 0 4308 234 36 5 chrX 44824714 44825646 -132148494 - MLT1A1-int LTR MaLR -774 961 1 1647 238 29 0 chrX 44825653 44825998 -132148142 - MLT1A1 LTR MaLR -8 357 3 3027 239 74 37 chrX 44827048 44827696 -132146444 - L1MB4 LINE L1 0 6180 5558 2366 80 0 6 chrX 44827696 44828009 -132146131 - AluY SINE Alu 0 311 1 3027 239 74 37 chrX 44828009 44828856 -132145284 - L1MB4 LINE L1 -622 5558 4744 2489 68 0 0 chrX 44828856 44829152 -132144988 - AluY SINE Alu -15 296 1 3027 239 74 37 chrX 44829152 44829304 -132144836 - L1MB4 LINE L1 -1436 4744 4599 1278 246 21 21 chrX 44829304 44829593 -132144547 + AluJb SINE Alu 1 289 -23 3027 239 74 37 chrX 44829593 44829649 -132144491 - L1MB4 LINE L1 -1581 4599 4409 3203 244 25 31 chrX 44829667 44830047 -132144093 + L1 LINE L1 1609 1989 -4157 2074 133 3 0 chrX 44830047 44830333 -132143807 + AluSx SINE Alu 9 295 -17 3203 244 25 31 chrX 44830333 44831509 -132142631 + L1 LINE L1 1989 3147 -2999 5775 16 8 0 chrX 44831511 44832221 -132141919 + L1PA4 LINE L1 5477 6191 0 3109 205 30 30 chrX 44832388 44833456 -132140684 + L1 LINE L1 3152 4958 -1188 519 122 89 0 chrX 44833459 44833549 -132140591 + MER4A LTR ERV1 1 98 -566 444 155 27 142 chrX 44833549 44833736 -132140404 + MER4A LTR ERV1 261 484 -180 2615 104 3 0 chrX 44833736 44834090 -132140050 + THE1A LTR MaLR 1 355 0 6548 116 17 0 chrX 44834090 44835038 -132139102 + THE1A-int LTR MaLR 1 964 -616 2358 183 52 35 chrX 44835038 44835636 -132138504 - MER4B LTR ERV1 0 779 3 725 102 8 8 chrX 44835636 44835754 -132138386 - L1PA14 LINE L1 -326 5835 5718 * 1280 166 20 4 chrX 44835749 44835996 -132138144 + L1PA14 LINE L1 5455 5705 -451 239 179 0 0 chrX 44835998 44836037 -132138103 - LTR9B LTR ERV1 0 644 606 2334 108 61 0 chrX 44836051 44836413 -132137727 - L1PA5 LINE L1 -1 6153 5770 32105 47 4 0 chrX 44836413 44841924 -132132216 - L1PA4 LINE L1 -2 6153 623 741 102 0 0 chrX 44841922 44842020 -132132120 - L1PA4 LINE L1 -6048 98 1 * 36921 96 6 31 chrX 44842022 44847945 -132126195 - L1PA5 LINE L1 -374 5780 15 2568 216 68 7 chrX 44847946 44848524 -132125616 - LTR9B LTR ERV1 -25 619 7 1176 195 28 22 chrX 44848532 44848791 -132125349 - HUERS-P3 LTR ERV1 -3 8915 6828 618 223 52 12 chrX 44849075 44849265 -132124875 - HUERS-P3 LTR ERV1 -2453 2562 2384 536 200 0 9 chrX 44849260 44849370 -132124770 - HUERS-P3 LTR ERV1 -1937 6982 6874 * 4105 188 18 7 chrX 44849381 44850124 -132124016 - HUERS-P3 LTR ERV1 -2007 6912 6162 * 4276 129 5 2 chrX 44850109 44850715 -132123425 - HUERS-P3 LTR ERV1 -3342 5577 4970 705 252 7 0 chrX 44850756 44850899 -132123241 - HUERS-P3 LTR ERV1 -4237 4682 4539 * 9858 156 3 4 chrX 44850892 44852387 -132121753 - HUERS-P3 LTR ERV1 -5635 3284 1791 4376 152 58 88 chrX 44852384 44853323 -132120817 - HUERS-P3 LTR ERV1 -7267 1652 743 * 1772 222 29 43 chrX 44853343 44853789 -132120351 - HUERS-P3 LTR ERV1 -6859 559 120 207 0 0 0 chrX 44853789 44853812 -132120328 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 497 166 74 24 chrX 44853890 44854019 -132120121 - HUERS-P3 LTR ERV1 -6863 133 1 2911 193 68 7 chrX 44854019 44854620 -132119520 - LTR9B LTR ERV1 0 644 7 1636 217 41 36 chrX 44854627 44855070 -132119070 + L1PB4 LINE L1 5705 6149 -7 23 54 0 0 chrX 44855080 44855117 -132119023 + AT_rich Low_complexity Low_complexity 1 37 0 848 185 19 19 chrX 44855126 44855283 -132118857 + MLT1A1 LTR MaLR 208 364 -1 23657 50 4 1 chrX 44855326 44858931 -132115209 - L1PA5 LINE L1 0 6154 2543 4948 62 0 11 chrX 44858931 44859557 -132114583 + L1P LINE L1 184 802 -5344 210 71 0 0 chrX 44859570 44859598 -132114542 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1720 188 3 11 chrX 44859601 44859888 -132114252 - AluSx SINE Alu -27 285 1 438 154 99 11 chrX 44859888 44859979 -132114161 + Ricksha DNA DNA 3128 3226 -20 518 132 0 0 chrX 44859999 44860075 -132114065 + L1MA10 LINE L1 5710 5785 -383 1512 197 0 67 chrX 44860081 44860457 -132113683 + MER46B DNA MER2_type 11 236 0 288 0 0 0 chrX 44860460 44860492 -132113648 + (CA)n Simple_repeat Simple_repeat 2 33 0 280 263 50 0 chrX 44860492 44860572 -132113568 - L1MC4 LINE L1 -1339 6703 6620 * 302 259 49 0 chrX 44860504 44860585 -132113555 + L1MC4 LINE L1 6614 6698 -1344 * 2030 216 32 50 chrX 44860574 44861138 -132113002 + L1MA10 LINE L1 5781 6334 0 21 57 0 0 chrX 44861492 44861527 -132112613 + AT_rich Low_complexity Low_complexity 1 35 0 857 182 85 116 chrX 44862210 44862528 -132111612 - LTR1B LTR ERV1 -384 442 135 28 29 0 0 chrX 44862804 44862839 -132111301 + AT_rich Low_complexity Low_complexity 1 35 0 3412 36 3 0 chrX 44863113 44863500 -132110640 - L1PA4 LINE L1 0 6155 5768 * 6900 79 19 0 chrX 44863494 44864808 -132109332 + L1PA6 LINE L1 4822 6154 0 692 189 8 0 chrX 44865065 44865197 -132108943 + LTR1 LTR ERV1 1 133 -652 4089 19 2 2 chrX 44865197 44865670 -132108470 - L1P2 LINE L1 -401 5754 5282 15629 111 12 10 chrX 44865674 44867916 -132106224 - HERV9 LTR ERV1 -6114 2285 40 760 106 0 0 chrX 44867926 44868030 -132106110 - LTR12 LTR ERV1 -130 584 481 301 256 11 0 chrX 44868031 44868121 -132106019 - LTR30 LTR ERV1 -79 643 553 1829 144 7 7 chrX 44868122 44868407 -132105733 - LTR12 LTR ERV1 -429 285 1 3573 250 32 17 chrX 44868407 44869925 -132104215 + L1M3f LINE L1 542 2085 -4074 5728 148 38 0 chrX 44869954 44870966 -132103174 - L1PA15 LINE L1 -7 7577 6535 237 65 0 0 chrX 44870966 44870997 -132103143 + (TTA)n Simple_repeat Simple_repeat 3 33 0 5728 148 38 0 chrX 44870997 44871129 -132103011 - L1PA15 LINE L1 -1049 6535 6409 2031 158 26 20 chrX 44871129 44871645 -132102495 + MLT2A2 LTR ERVL 6 554 0 813 194 88 19 chrX 44871647 44871863 -132102277 - L1PA15 LINE L1 -1149 6416 6186 6929 125 31 9 chrX 44871913 44871981 -132102159 - L1PA15 LINE L1 -3984 3581 3516 303 28 0 0 chrX 44871981 44872017 -132102123 + (TG)n Simple_repeat Simple_repeat 2 37 0 6929 125 31 9 chrX 44872017 44873155 -132100985 - L1PA15 LINE L1 -4049 3516 2348 30169 128 12 61 chrX 44873162 44879277 -132094863 + L1P3 LINE L1 12 5819 -335 549 280 8 0 chrX 44879264 44879396 -132094744 + L1M1 LINE L1 1427 1559 -6006 * 2602 62 9 3 chrX 44879413 44879733 -132094407 + L1PA7 LINE L1 5829 6150 -4 11308 202 37 17 chrX 44879733 44882031 -132092109 - L1M1 LINE L1 -5209 2356 12 9358 239 29 32 chrX 44882021 44882581 -132091559 - L1PA13 LINE L1 -3752 3045 2485 * 6388 22 0 0 chrX 44882581 44883275 -132090865 + L1PA2 LINE L1 5461 6154 -1 9358 239 29 32 chrX 44883275 44885686 -132088454 - L1PA13 LINE L1 -4312 2485 96 349 187 77 0 chrX 44885689 44885780 -132088360 + L1M1 LINE L1 3344 3441 -4124 2933 210 19 16 chrX 44885781 44886224 -132087916 + L1 LINE L1 4073 4520 -1626 2216 128 0 0 chrX 44886224 44886528 -132087612 + AluSg SINE Alu 1 304 -6 2933 210 19 16 chrX 44886528 44886755 -132087385 + L1 LINE L1 4520 4745 -1401 29639 114 11 10 chrX 44886757 44891011 -132083129 + L1PA7 LINE L1 702 4987 -1482 270 0 0 0 chrX 44891011 44891041 -132083099 + (CA)n Simple_repeat Simple_repeat 1 30 0 29639 114 11 10 chrX 44891041 44892519 -132081621 + L1PA7 LINE L1 4987 6463 -6 4782 180 36 12 chrX 44892520 44892843 -132081297 + L1PA16 LINE L1 4737 5051 -1115 2224 40 0 0 chrX 44892843 44893094 -132081046 + L1PA4 LINE L1 5901 6151 -4 4782 180 36 12 chrX 44893094 44894158 -132079982 + L1PA16 LINE L1 5051 6155 -11 1228 183 44 44 chrX 44894162 44894566 -132079574 + L1M1 LINE L1 3466 3869 -3696 19481 97 16 2 chrX 44894570 44897251 -132076889 + L1P LINE L1 3 2720 -3426 7071 167 17 10 chrX 44897360 44898698 -132075442 - L1 LINE L1 -909 5237 3890 1964 162 0 10 chrX 44898698 44899007 -132075133 + AluSx SINE Alu 1 306 -6 582 70 40 30 chrX 44899007 44899107 -132075033 + MER4B-int LTR ERV1 2282 2382 -4376 30108 115 14 9 chrX 44899107 44900561 -132073579 - L1PA7 LINE L1 0 6469 5024 270 0 0 0 chrX 44900561 44900591 -132073549 + (TG)n Simple_repeat Simple_repeat 1 30 0 30108 115 14 9 chrX 44900591 44904845 -132069295 - L1PA7 LINE L1 -1445 5024 702 2933 210 19 16 chrX 44904847 44905074 -132069066 - L1 LINE L1 -1401 6164 5939 2216 128 0 0 chrX 44905074 44905378 -132068762 - AluSg SINE Alu -6 304 1 2933 210 19 16 chrX 44905378 44905821 -132068319 - L1 LINE L1 -1626 5939 5492 349 187 77 0 chrX 44905822 44905913 -132068227 - L1 LINE L1 -4124 3441 3344 9358 239 26 38 chrX 44905916 44908327 -132065813 + L1PA13 LINE L1 96 2491 -4306 1350 52 11 11 chrX 44908327 44908501 -132065639 - L1PA2 LINE L1 -1 6154 5981 17645 58 1 1 chrX 44908606 44911501 -132062639 + L1PA5 LINE L1 3258 6154 0 3068 195 60 8 chrX 44911503 44912369 -132061771 - L1P LINE L1 -795 6789 5803 * 6362 228 25 19 chrX 44912365 44915021 -132059119 - L1PA12 LINE L1 -4360 3224 1 4578 262 30 9 chrX 44915022 44916442 -132057698 + L1 LINE L1 3035 4483 -1663 954 215 8 16 chrX 44916546 44916792 -132057348 + L1P LINE L1 5032 5275 -871 3090 296 33 16 chrX 44916803 44917957 -132056183 + L1PBa LINE L1 3 1175 -5688 3257 116 5 0 chrX 44917959 44918406 -132055734 + HERVK22 LTR ERVK 4869 5317 -1520 2643 108 15 18 chrX 44918406 44918795 -132055345 + LTR15 LTR ERV1 1 388 -105 1216 89 0 0 chrX 44918918 44919075 -132055065 + HERVK22 LTR ERVK 5314 5470 -1367 * 6805 116 11 10 chrX 44919074 44920044 -132054096 + HERVK22 LTR ERVK 5859 6829 -8 649 210 5 37 chrX 44920044 44920056 -132054084 + L1MA4 LINE L1 5539 5550 -616 2777 164 29 31 chrX 44920056 44920545 -132053595 + LTR22B LTR ERVK 5 492 0 649 210 5 37 chrX 44920545 44920683 -132053457 + L1MA4 LINE L1 5550 5680 -486 5005 179 42 7 chrX 44920683 44922353 -132051787 + L1PA16 LINE L1 4438 6164 -2 2975 170 48 10 chrX 44922356 44922955 -132051185 + L1MA4 LINE L1 5677 6298 -2 732 137 15 23 chrX 44923103 44923234 -132050906 + L1MA4 LINE L1 6165 6294 -6 5519 277 105 29 chrX 44923237 44925483 -132048657 + L1M2 LINE L1 7 2423 -4426 2166 191 76 2 chrX 44925483 44925880 -132048260 - MSTB LTR MaLR 0 426 1 8754 180 52 9 chrX 44925881 44927462 -132046678 - MSTB-int LTR MaLR -1 1650 1 2377 177 49 2 chrX 44927462 44927869 -132046271 - MSTB LTR MaLR 0 426 1 7033 225 42 20 chrX 44927869 44929461 -132044679 + L1M2 LINE L1 2419 3974 -2874 2041 150 56 19 chrX 44929461 44929820 -132044320 - THE1C LTR MaLR 0 375 4 10447 107 41 60 chrX 44929823 44931432 -132042708 - THE1C-int LTR MaLR 0 1580 2 2525 102 30 21 chrX 44931433 44931805 -132042335 - THE1C LTR MaLR 0 375 1 7033 225 42 20 chrX 44931805 44932675 -132041465 + L1M2 LINE L1 3974 4947 -1901 1292 308 37 14 chrX 44932685 44933113 -132041027 + L1M2 LINE L1 11 448 -6401 333 293 64 76 chrX 44933188 44933345 -132040795 + L1M2 LINE L1 646 800 -6049 10627 225 36 22 chrX 44933966 44936739 -132037401 + L1M2 LINE L1 1067 3919 -2929 243 0 0 0 chrX 44936739 44936766 -132037374 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 10627 225 36 22 chrX 44936766 44938386 -132035754 + L1M2 LINE L1 3919 5516 -1332 893 223 10 11 chrX 44938496 44940154 -132033986 + ALR/Alpha Satellite centromeric 1 1659 -7238 1960 136 11 0 chrX 44940154 44940440 -132033700 - AluSc SINE Alu -20 289 1 893 223 10 11 chrX 44940440 44940875 -132033265 + ALR/Alpha Satellite centromeric 1659 2093 -6804 207 0 0 0 chrX 44940875 44940898 -132033242 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 893 223 10 11 chrX 44940898 44945515 -132028625 + ALR/Alpha Satellite centromeric 2093 7993 -904 5052 161 24 40 chrX 44945515 44946499 -132027641 + LTR5 LTR ERVK 1 969 0 893 223 10 11 chrX 44946499 44947351 -132026789 + ALR/Alpha Satellite centromeric 7993 8844 -53 5342 94 36 4 chrX 44947365 44948148 -132025992 - L1PA7 LINE L1 -1 6153 5346 752 230 27 6 chrX 44948158 44948971 -132025169 + ALR/Alpha Satellite centromeric 1 829 -8 822 228 4 1 chrX 44949011 44950301 -132023839 + ALR/Alpha Satellite centromeric 1 1293 -11 2957 183 3 14 chrX 44950301 44951302 -132022838 + L1MA2 LINE L1 4774 5764 -540 * 4773 164 17 18 chrX 44951300 44951379 -132022761 + L1PB3 LINE L1 5259 5337 -817 5797 121 4 15 chrX 44951379 44952344 -132021796 + L1PA13 LINE L1 4854 5816 -347 1603 96 0 0 chrX 44952344 44952598 -132021542 + AluY SINE Alu 84 337 0 5797 121 4 15 chrX 44952598 44952938 -132021202 + L1PA13 LINE L1 5816 6158 -5 4773 164 17 18 chrX 44952938 44953753 -132020387 + L1PB3 LINE L1 5337 6152 -2 2523 152 7 75 chrX 44953758 44954329 -132019811 + L1MA2 LINE L1 5773 6304 0 643 262 35 0 chrX 44954361 44954506 -132019634 - MLT1A1 LTR MaLR -215 150 1 2079 219 51 50 chrX 44954506 44955836 -132018304 + L1MA10 LINE L1 4843 6316 -18 438 217 0 33 chrX 44955842 44955934 -132018206 - AluY SINE Alu -24 287 199 436 310 48 55 chrX 44955990 44956186 -132017954 - L1M2 LINE L1 -5793 1792 1597 3093 135 22 6 chrX 44956186 44956689 -132017451 - MER9 LTR ERVK 0 511 1 436 310 48 55 chrX 44956689 44956763 -132017377 - L1M2 LINE L1 -5988 1597 1524 1035 320 43 38 chrX 44957762 44958340 -132015800 - L1M2 LINE L1 -6440 1145 5 321 277 92 7 chrX 44958342 44958483 -132015657 - L1MCa LINE L1 -4222 2204 2052 183 355 106 28 chrX 44958505 44958787 -132015353 - L2 LINE L2 -1167 2147 1844 742 245 0 13 chrX 44958828 44958983 -132015157 - FRAM SINE Alu -15 161 9 2512 98 4 179 chrX 44959279 44959828 -132014312 - MLT2A2 LTR ERVL 0 453 1 2279 153 15 0 chrX 44959828 44960219 -132013921 - HERVL-A2 LTR ERVL 0 5654 5258 * 19853 130 16 6 chrX 44960216 44962119 -132012021 - HERVL-A2 LTR ERVL -2444 3210 1264 2512 127 0 11 chrX 44962119 44962498 -132011642 + THE1C LTR MaLR 1 375 0 19853 130 16 6 chrX 44962498 44963590 -132010550 - HERVL-A2 LTR ERVL -4390 1264 185 3225 144 67 25 chrX 44963591 44964667 -132009473 - MER11A LTR ERVK -4 1232 1 1135 147 0 0 chrX 44964667 44964858 -132009282 - HERVL-A2 LTR ERVL -5461 193 3 234 118 20 59 chrX 44964865 44964916 -132009224 - MLT2A2 LTR ERVL -8 512 464 443 90 89 17 chrX 44964916 44965631 -132008509 + (TA)n Simple_repeat Simple_repeat 1 766 0 384 108 92 14 chrX 44965671 44966173 -132007967 + (TA)n Simple_repeat Simple_repeat 1 541 0 293 130 99 0 chrX 44966233 44966395 -132007745 + (TA)n Simple_repeat Simple_repeat 1 178 0 1815 196 33 22 chrX 44966395 44966898 -132007242 - MLT2A2 LTR ERVL -44 500 1 217 294 98 42 chrX 44966899 44967042 -132007098 - MIR SINE MIR -5 257 107 257 329 84 62 chrX 44967044 44967400 -132006740 - L2 LINE L2 -1842 1472 1109 244 345 30 20 chrX 44967378 44967581 -132006559 + L2 LINE L2 628 832 -2482 * 206 154 26 0 chrX 44967706 44967745 -132006395 + CT-rich Low_complexity Low_complexity 1 40 0 5153 209 11 19 chrX 44967749 44968790 -132005350 + MSTA-int LTR MaLR 549 1580 0 1739 176 145 18 chrX 44968790 44969170 -132004970 + MSTA LTR MaLR 1 428 0 7600 245 53 12 chrX 44969170 44971558 -132002582 - L1PA13 LINE L1 -3688 3109 604 796 220 183 0 chrX 44971554 44971745 -132002395 - L1PA13 LINE L1 -6561 226 1 * 577 296 70 15 chrX 44971855 44972375 -132001765 - L1MCa LINE L1 -4486 1986 1296 1086 200 39 8 chrX 44972378 44972638 -132001502 - L1MB1 LINE L1 -4 6164 5897 866 191 0 25 chrX 44972638 44972795 -132001345 - MSTC LTR MaLR -6 422 270 2595 282 68 51 chrX 44972802 44973883 -132000257 - MSTC-int LTR MaLR -634 1101 2 2056 178 28 39 chrX 44973884 44974316 -131999824 - MSTC LTR MaLR 0 428 2 2754 246 53 18 chrX 44974333 44975837 -131998303 - L1MB1 LINE L1 -320 5848 4290 277 229 33 0 chrX 44975854 44975915 -131998225 + L1PA12 LINE L1 11 73 -7508 3837 263 33 75 chrX 44975924 44978132 -131996008 + L1PA12 LINE L1 1133 3260 -4324 6026 101 17 2 chrX 44978137 44979120 -131995020 + L1PA10 LINE L1 5153 6149 -19 236 29 0 29 chrX 44979120 44979154 -131994986 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 4239 296 85 67 chrX 44979163 44981552 -131992588 + L1PA12 LINE L1 54 2485 -5096 11461 239 26 25 chrX 44981564 44984839 -131989301 + L1PA12 LINE L1 2908 6186 -1398 712 276 67 50 chrX 44984844 44985265 -131988875 - L1MCb LINE L1 -5012 1410 983 233 293 100 64 chrX 44985618 44985867 -131988273 - L1MCb LINE L1 -5967 456 199 1762 251 78 14 chrX 44985932 44986429 -131987711 + LTR68 LTR ERV1 3 531 -209 3271 239 28 30 chrX 44986678 44988150 -131985990 - L1MB3 LINE L1 -8 6175 4696 14410 231 29 41 chrX 44988228 44990888 -131983252 - L1PA14 LINE L1 -6 7732 5040 273 57 0 0 chrX 44990888 44990923 -131983217 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 14410 231 29 41 chrX 44990923 44993228 -131980912 - L1PA14 LINE L1 -2698 5040 2707 739 85 0 0 chrX 44993228 44993334 -131980806 - AluY SINE Alu -5 306 201 14410 231 29 41 chrX 44993334 44996653 -131977487 - L1PA14 LINE L1 -5031 2707 6 1616 170 3 0 chrX 44996693 44996975 -131977165 - L1PBa LINE L1 -5706 1157 875 905 214 5 0 chrX 44997118 44997305 -131976835 + L1PBa LINE L1 8 195 -6668 11854 229 52 14 chrX 44997308 45002307 -131971833 + L1PBa LINE L1 634 5926 -936 6716 226 49 22 chrX 45002296 45003488 -131970652 + L1 LINE L1 2124 3283 -2863 * 1874 150 56 19 chrX 45003488 45003847 -131970293 - THE1C LTR MaLR 0 375 4 9664 107 41 60 chrX 45003850 45005459 -131968681 - THE1C-int LTR MaLR 0 1580 2 2332 102 30 21 chrX 45005460 45005832 -131968308 - THE1C LTR MaLR 0 375 1 6716 226 49 22 chrX 45005832 45006697 -131967443 + L1 LINE L1 3283 4242 -1904 1282 307 42 14 chrX 45006707 45007140 -131967000 + L1PB4 LINE L1 4 448 -6401 343 293 64 76 chrX 45007215 45007372 -131966768 + L1PB4 LINE L1 646 800 -6049 12702 215 35 18 chrX 45007993 45010766 -131963374 + L1PB4 LINE L1 1067 3793 -3065 243 0 0 0 chrX 45010766 45010793 -131963347 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 12702 215 35 18 chrX 45010793 45013506 -131960634 + L1PB4 LINE L1 3793 6629 -229 368 210 62 0 chrX 45013506 45013587 -131960553 + L1ME3A LINE L1 5523 5608 -562 266 250 60 0 chrX 45013613 45013697 -131960443 + L1ME3A LINE L1 5693 5781 -381 913 187 0 22 chrX 45013716 45013898 -131960242 + AluJo SINE Alu 115 292 -20 364 221 165 0 chrX 45013899 45014026 -131960114 + L1ME3A LINE L1 5816 5963 -207 2107 200 68 0 chrX 45014026 45014495 -131959645 + L1MB7 LINE L1 5667 6167 -17 353 246 118 20 chrX 45014533 45014736 -131959404 + L1ME3A LINE L1 5948 6170 0 22 0 0 0 chrX 45014902 45014924 -131959216 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 45016059 45016086 -131958054 + AT_rich Low_complexity Low_complexity 1 27 0 664 141 92 7 chrX 45016544 45016686 -131957454 - L1MA8 LINE L1 -3 6288 6135 197 156 0 0 chrX 45017572 45017604 -131956536 + L2 LINE L2 3261 3292 -21 391 379 81 25 chrX 45018556 45018999 -131955141 + L2 LINE L2 2390 2857 -457 2163 129 100 6 chrX 45019490 45019931 -131954209 - MER1A DNA MER1_type -4 525 1 569 98 49 0 chrX 45019997 45020140 -131954000 + (TA)n Simple_repeat Simple_repeat 1 150 0 297 0 0 0 chrX 45021800 45021833 -131952307 + (CA)n Simple_repeat Simple_repeat 2 34 0 188 176 118 20 chrX 45021904 45021955 -131952185 + MIR SINE MIR 156 211 -51 310 224 15 0 chrX 45022465 45022532 -131951608 - MIR SINE MIR -109 153 86 198 0 0 0 chrX 45022870 45022892 -131951248 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 633 292 0 36 chrX 45022893 45023061 -131951079 - MIR3 SINE MIR -30 178 17 353 264 67 114 chrX 45024792 45025197 -131948943 - L1M2 LINE L1 -5468 1381 996 22 0 0 0 chrX 45025385 45025407 -131948733 + GC_rich Low_complexity Low_complexity 1 22 0 359 270 108 70 chrX 45025688 45025947 -131948193 + L1M4 LINE L1 4724 4992 -1154 1044 260 42 112 chrX 45026962 45027694 -131946446 - L1ME3A LINE L1 -34 6136 5456 1520 277 105 40 chrX 45027934 45029025 -131945115 - L1ME3A LINE L1 -975 5171 4010 372 236 183 91 chrX 45029037 45029278 -131944862 - LTR41 LTR ERVL -9 764 502 369 0 0 0 chrX 45029526 45029567 -131944573 + (TG)n Simple_repeat Simple_repeat 1 41 0 576 220 32 75 chrX 45029758 45029944 -131944196 - LTR41 LTR ERVL -592 181 4 421 184 0 0 chrX 45030076 45030152 -131943988 + L1PB4 LINE L1 6076 6151 -5 43 56 0 0 chrX 45032935 45033006 -131941134 + AT_rich Low_complexity Low_complexity 1 71 0 1504 221 123 31 chrX 45033024 45033480 -131940660 - L1ME1 LINE L1 -82 6084 5587 333 250 0 0 chrX 45033536 45033604 -131940536 + HERVL40 LTR ERVL 5408 5475 -55 1730 202 46 65 chrX 45033606 45034084 -131940056 + LTR55 LTR ERV 1 469 -79 2092 108 0 26 chrX 45034084 45034389 -131939751 + AluSx SINE Alu 1 297 -15 1730 202 46 65 chrX 45034389 45034450 -131939690 + LTR55 LTR ERV 469 530 -18 301 339 8 8 chrX 45037202 45037320 -131936820 + HERVL40 LTR ERVL 1837 1954 -3731 3947 128 7 11 chrX 45037595 45038203 -131935937 + HERVE LTR ERV1 2644 3353 -4299 1209 148 0 0 chrX 45038203 45038392 -131935748 - HERVE LTR ERV1 -2156 5657 5469 1172 113 6 0 chrX 45038379 45038539 -131935601 - HERVE LTR ERV1 -2656 5157 4997 * 879 266 44 39 chrX 45038857 45039195 -131934945 + HERVL40 LTR ERVL 2476 2815 -741 198 0 0 0 chrX 45041582 45041604 -131932536 + (CA)n Simple_repeat Simple_repeat 1 22 0 1508 93 23 5 chrX 45042062 45042277 -131931863 - L1PA16 LINE L1 -3 6163 5945 2223 91 3 36 chrX 45042479 45042788 -131931352 - AluSg SINE Alu -11 299 1 1668 209 17 50 chrX 45044280 45044759 -131929381 + LTR55 LTR ERV 69 531 -17 678 219 12 26 chrX 45044908 45045111 -131929029 + LTR40b LTR ERVL 288 462 0 759 276 107 71 chrX 45045389 45045799 -131928341 + HERVL40 LTR ERVL 963 1387 -4143 483 311 25 41 chrX 45046111 45046355 -131927785 + HERVL40 LTR ERVL 1378 1617 -3913 * 1182 260 26 40 chrX 45046354 45046704 -131927436 + HERVL40 LTR ERVL 2050 2394 -3136 1379 279 15 0 chrX 45046705 45047042 -131927098 + HERVL40 LTR ERVL 2562 2903 -2627 2577 252 65 16 chrX 45049981 45051170 -131922970 + HERVL40 LTR ERVL 2898 4290 -1240 21 0 0 0 chrX 45051174 45051195 -131922945 + AT_rich Low_complexity Low_complexity 1 21 0 2797 153 27 6 chrX 45051202 45051678 -131922462 - L1MA6 LINE L1 0 6300 5815 182 36 0 36 chrX 45051679 45051707 -131922433 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7381 27 2 0 chrX 45051791 45052648 -131921492 - L1PA3 LINE L1 0 6155 5297 3522 196 62 28 chrX 45052630 45052924 -131921216 - L1MA6 LINE L1 -469 5831 5549 * 2050 136 10 3 chrX 45052924 45053233 -131920907 - AluSx SINE Alu -1 311 1 3522 196 62 28 chrX 45053233 45054091 -131920049 - L1MA6 LINE L1 -751 5549 4638 691 65 27 49 chrX 45054091 45054275 -131919865 + (TA)n Simple_repeat Simple_repeat 1 180 0 308 110 49 43 chrX 45054237 45054400 -131919740 + (TATAA)n Simple_repeat Simple_repeat 5 168 0 * 45 19 0 0 chrX 45054402 45054454 -131919686 + AT_rich Low_complexity Low_complexity 1 52 0 3109 171 26 40 chrX 45054454 45055148 -131918992 - L1MA6 LINE L1 -1514 4632 3949 * 14555 190 27 47 chrX 45055115 45055185 -131918955 - L1PA15 LINE L1 -9 6156 6086 12431 36 3 0 chrX 45055185 45057358 -131916782 - L1PA4 LINE L1 -5 6150 3973 14555 190 27 47 chrX 45057358 45058448 -131915692 - L1PA15 LINE L1 -79 6086 4976 823 110 0 0 chrX 45058448 45058598 -131915542 - AluSc SINE Alu 0 322 173 14555 190 27 47 chrX 45058598 45061644 -131912496 - L1PA15 LINE L1 -1189 4976 1918 2163 114 0 3 chrX 45061644 45061950 -131912190 + AluY SINE Alu 5 309 -2 14555 190 27 47 chrX 45061950 45062011 -131912129 - L1PA15 LINE L1 -4247 1918 1857 * 15475 48 6 1 chrX 45061998 45063913 -131910227 - L1PA5 LINE L1 -1013 5133 3209 7638 59 0 0 chrX 45063913 45064938 -131909202 + L1PA5 LINE L1 5128 6152 -2 4062 196 16 11 chrX 45064947 45065916 -131908224 - L1PA15 LINE L1 -4275 3309 2319 312 332 53 35 chrX 45067754 45068170 -131905970 - L1PA15 LINE L1 -6571 1014 2 * 2881 243 63 13 chrX 45068167 45068592 -131905548 - L1 LINE L1 -2122 3912 3510 21395 45 3 2 chrX 45068592 45071916 -131902224 + L1PA4 LINE L1 2781 6155 0 2881 243 63 13 chrX 45071916 45072429 -131901711 - L1 LINE L1 -2524 3510 2927 4562 265 60 43 chrX 45072443 45074611 -131899529 - L1 LINE L1 -3573 2461 554 4057 172 25 0 chrX 45074611 45075319 -131898821 + L1MA5 LINE L1 5573 6298 -2 4562 265 60 43 chrX 45075319 45075883 -131898257 - L1 LINE L1 -5480 554 1 303 173 12 49 chrX 45076475 45076556 -131897584 - L1MB8 LINE L1 0 6414 6337 478 76 76 0 chrX 45076556 45076622 -131897518 - AluY SINE Alu -26 285 215 2715 212 54 36 chrX 45076649 45077835 -131896305 - L1MB8 LINE L1 -315 6099 4863 1907 150 0 0 chrX 45077835 45078140 -131896000 + AluSx SINE Alu 1 281 -31 2715 212 54 36 chrX 45078140 45078416 -131895724 - L1MB8 LINE L1 -1551 4863 4593 3071 149 66 6 chrX 45078422 45078940 -131895200 - MER41B LTR ERV1 -86 549 1 4852 106 42 34 chrX 45078940 45080441 -131893699 - MER41B-int LTR ERV1 0 6129 4491 3708 158 36 2 chrX 45080453 45081067 -131893073 - MER41B-int LTR ERV1 -5311 635 1 863 153 40 7 chrX 45081067 45081217 -131892923 - MER41B LTR ERV1 0 635 481 1131 221 54 73 chrX 45081217 45081643 -131892497 - L1MB8 LINE L1 -1778 4604 4187 * 5529 130 26 11 chrX 45081638 45082736 -131891404 - L1PA13 LINE L1 -4 6159 5045 737 284 86 3 chrX 45082718 45083010 -131891130 - L1MB8 LINE L1 -2201 4181 3866 * 1169 258 36 17 chrX 45083069 45083545 -131890595 - L1MB8 LINE L1 -3447 2935 2451 296 254 92 0 chrX 45083598 45083740 -131890400 - L1MB8 LINE L1 -3931 2453 2299 4377 157 66 3 chrX 45083748 45084683 -131889457 - L1MA4A LINE L1 -5 7717 6716 * 6696 201 39 16 chrX 45084665 45086198 -131887942 - L1PA15 LINE L1 -2 6163 4549 1863 144 10 10 chrX 45086198 45086497 -131887643 - AluSx SINE Alu -13 299 1 6696 201 39 16 chrX 45086497 45087529 -131886611 - L1PA15 LINE L1 -1616 4549 3542 4886 221 30 23 chrX 45087530 45089011 -131885129 - L1MA4A LINE L1 -815 6750 5260 3440 144 13 57 chrX 45089022 45089638 -131884502 - LTR8 LTR ERV1 -102 589 1 2614 200 8 22 chrX 45089638 45090172 -131883968 - HUERS-P1 LTR ERV1 0 6263 5738 1081 112 66 25 chrX 45090167 45090364 -131883776 - HUERS-P1 LTR ERV1 -751 5195 4991 * 1277 140 7 102 chrX 45090364 45090657 -131883483 - HUERS-P1 LTR ERV1 -998 5265 5001 275 282 32 0 chrX 45090680 45090804 -131883336 - L1MA4A LINE L1 -4564 3001 2874 2124 107 13 3 chrX 45090983 45091282 -131882858 + AluSq SINE Alu 1 302 -11 230 0 33 0 chrX 45091400 45091430 -131882710 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1396 262 45 27 chrX 45091739 45092228 -131881912 + MLT1D LTR MaLR 1 498 -7 2158 111 6 16 chrX 45092567 45092882 -131881258 - AluSx SINE Alu 0 312 1 2058 173 47 12 chrX 45093601 45094023 -131880117 - HUERS-P1 LTR ERV1 -1580 4366 3930 1674 199 0 30 chrX 45094040 45094342 -131879798 - HUERS-P1 LTR ERV1 -5970 293 1 903 148 7 0 chrX 45094342 45094484 -131879656 - LTR8 LTR ERV1 0 691 549 421 229 9 0 chrX 45094485 45094590 -131879550 - L1 LINE L1 -2299 3847 3742 27 0 0 0 chrX 45094744 45094771 -131879369 + AT_rich Low_complexity Low_complexity 1 27 0 22246 47 1 2 chrX 45094771 45098363 -131875777 - L1PA4 LINE L1 -3 6152 2562 3083 196 48 64 chrX 45098397 45099242 -131874898 - L1 LINE L1 -1980 5187 4361 2168 99 10 0 chrX 45099242 45099534 -131874606 - AluY SINE Alu -15 296 2 3083 196 48 64 chrX 45099534 45099751 -131874389 - L1 LINE L1 -2806 4361 4142 233 317 0 0 chrX 45101117 45101177 -131872963 + (CCCCAG)n Simple_repeat Simple_repeat 5 64 0 775 101 34 34 chrX 45101476 45101655 -131872485 + CT-rich Low_complexity Low_complexity 1 179 0 1639 275 46 3 chrX 45101695 45102265 -131871875 - L1 LINE L1 -3022 4145 3552 1202 187 5 5 chrX 45102265 45102479 -131871661 - AluJb SINE Alu -12 300 87 6467 242 24 28 chrX 45102500 45104296 -131869844 - L1 LINE L1 -3630 3537 1735 213 39 0 0 chrX 45104296 45104322 -131869818 + (CAG)n Simple_repeat Simple_repeat 2 27 0 6467 242 24 28 chrX 45104322 45104405 -131869735 - L1 LINE L1 -5432 1735 1653 4520 152 51 167 chrX 45104405 45105850 -131868290 + MER52C LTR ERV1 1 1278 0 6467 242 24 28 chrX 45105850 45106804 -131867336 - L1 LINE L1 -5514 1653 709 770 261 6 11 chrX 45106805 45106981 -131867159 - L1 LINE L1 -6329 839 665 449 281 44 59 chrX 45107001 45107204 -131866936 - L1 LINE L1 -6352 816 617 214 137 0 39 chrX 45107213 45107264 -131866876 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 4333 194 43 49 chrX 45107316 45107492 -131866648 - L1 LINE L1 -985 5161 4985 378 0 0 0 chrX 45107492 45107534 -131866606 + (TG)n Simple_repeat Simple_repeat 2 43 0 4333 194 43 49 chrX 45107534 45108531 -131865609 - L1 LINE L1 -1161 4985 3995 2466 289 63 21 chrX 45108534 45110099 -131864041 - L1MC/D LINE L1 -743 5403 3863 12032 164 12 2 chrX 45110104 45112856 -131861284 - L1PA12 LINE L1 -284 5884 3108 17767 191 28 26 chrX 45112868 45116891 -131857249 + L1M1 LINE L1 126 4158 -3407 1712 160 7 4 chrX 45116891 45117166 -131856974 + AluSx SINE Alu 17 292 -20 17767 191 28 26 chrX 45117166 45117553 -131856587 + L1M1 LINE L1 4158 4543 -3022 20035 157 102 64 chrX 45117562 45117962 -131856178 + L1MA1 LINE L1 12 395 -5907 315 0 0 0 chrX 45117962 45117997 -131856143 + (TTG)n Simple_repeat Simple_repeat 2 36 0 20035 157 102 64 chrX 45117997 45123649 -131850491 + L1MA1 LINE L1 395 6302 0 33 66 0 0 chrX 45123649 45123710 -131850430 + AT_rich Low_complexity Low_complexity 1 61 0 5044 140 41 32 chrX 45123714 45124361 -131849779 - L1PB1 LINE L1 0 6151 5488 204 40 0 0 chrX 45124361 45124386 -131849754 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 5044 140 41 32 chrX 45124386 45124923 -131849217 - L1PB1 LINE L1 -663 5488 4957 2070 266 49 17 chrX 45324930 45325789 -131648351 + L1M4c LINE L1 1172 2131 -4253 844 250 40 0 chrX 45325858 45326106 -131648034 + L1M4c LINE L1 3025 3282 -3100 921 128 11 39 chrX 45326110 45326289 -131647851 + L1MA3 LINE L1 5969 6142 -163 2229 182 31 47 chrX 45326395 45326906 -131647234 + L1MB1 LINE L1 5665 6167 -1 412 234 2 0 chrX 45326914 45327046 -131647094 + L1M4c LINE L1 3248 3382 -3000 * 4638 71 1 3 chrX 45327042 45328009 -131646131 - L1PA7 LINE L1 -295 5859 4894 2122 107 0 0 chrX 45328009 45328305 -131645835 + L1PA7 LINE L1 5854 6153 -1 3894 250 50 13 chrX 45328316 45329669 -131644471 + L1M4c LINE L1 3365 4766 -1616 328 290 73 8 chrX 45329906 45330030 -131644110 - MIR SINE MIR -82 180 49 228 271 179 0 chrX 45330038 45330178 -131643962 - L1ME4a LINE L1 -1 6120 5956 21 0 0 0 chrX 45330215 45330236 -131643904 + AT_rich Low_complexity Low_complexity 1 21 0 324 225 108 0 chrX 45330248 45330377 -131643763 - L1ME4a LINE L1 -12 6109 5967 3874 218 34 11 chrX 45330507 45331846 -131642294 - L1PB4 LINE L1 -3 6855 5496 5237 226 30 65 chrX 45331949 45334940 -131639200 - L1PB4 LINE L1 -2059 4789 1906 233 167 61 0 chrX 45334944 45335010 -131639130 + (TA)n Simple_repeat Simple_repeat 2 71 0 323 328 0 0 chrX 45335011 45335129 -131639011 - L1MC4 LINE L1 -1339 6703 6609 373 171 23 0 chrX 45335152 45335240 -131638900 + (TA)n Simple_repeat Simple_repeat 2 91 0 285 230 23 0 chrX 45335241 45335328 -131638812 + L1MC4 LINE L1 6615 6703 -1339 * 286 228 0 22 chrX 45335250 45335342 -131638798 - L1MC4 LINE L1 -1339 6703 6614 516 86 57 0 chrX 45335345 45335450 -131638690 + (TA)n Simple_repeat Simple_repeat 2 112 0 3536 276 47 7 chrX 45335450 45336421 -131637719 - L1PB4 LINE L1 -4977 1872 863 3932 255 37 19 chrX 45336563 45338223 -131635917 + L1PA12 LINE L1 2203 3918 -3666 14610 61 0 0 chrX 45338323 45340998 -131633142 + L1PA4 LINE L1 3476 6153 -2 650 229 23 6 chrX 45341023 45341198 -131632942 - L1 LINE L1 -1512 4634 4457 379 204 0 0 chrX 45341226 45341314 -131632826 - L1 LINE L1 -1602 4544 4457 225 185 0 0 chrX 45341318 45341383 -131632757 + (TA)n Simple_repeat Simple_repeat 2 66 0 198 194 45 0 chrX 45341539 45341606 -131632534 + GA-rich Low_complexity Low_complexity 3 72 0 421 351 69 19 chrX 45342128 45342375 -131631765 - MIR SINE MIR -6 256 2 183 314 110 8 chrX 45342670 45342788 -131631352 + MIR SINE MIR 35 164 -98 227 200 0 122 chrX 45343367 45343457 -131630683 + MER116 DNA Mariner 1 79 -1 423 207 67 30 chrX 45343508 45343643 -131630497 + MER96B DNA MER1_type? 225 364 -53 368 205 248 31 chrX 45343905 45344066 -131630074 - L2 LINE L2 0 3313 3118 362 236 75 28 chrX 45345216 45345322 -131628818 + MER21B LTR ERV1 629 739 -124 275 193 0 57 chrX 45345394 45345468 -131628672 + L1M3c LINE L1 6 254 -5877 2300 153 22 15 chrX 45345469 45345931 -131628209 - LTR56 LTR ERV1 0 445 6 445 393 40 10 chrX 45345974 45346277 -131627863 + L1M3c LINE L1 139 450 -5691 418 316 29 23 chrX 45347356 45347530 -131626610 + L1M3c LINE L1 959 1133 -5008 3182 202 27 74 chrX 45347531 45349244 -131624896 + L1MA8 LINE L1 4603 6235 -56 1236 211 29 86 chrX 45349244 45349601 -131624539 - MLT2B3 LTR ERVL 0 554 220 860 257 57 3 chrX 45349730 45350045 -131624095 - L1M4 LINE L1 -3170 2976 2645 2106 274 26 11 chrX 45350060 45350593 -131623547 + MER21B LTR ERV1 13 553 -310 440 195 0 73 chrX 45350721 45350844 -131623296 + L1MA9 LINE L1 5928 6041 -271 191 36 36 0 chrX 45350853 45350881 -131623259 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 363 78 0 0 chrX 45350880 45350931 -131623209 + (TG)n Simple_repeat Simple_repeat 2 52 0 2421 206 100 11 chrX 45350959 45351700 -131622440 + L1MC3 LINE L1 5512 6334 -10 1810 52 9 13 chrX 45354258 45354490 -131619650 - AluY SINE Alu -15 296 66 845 228 96 51 chrX 45354490 45354817 -131619323 + MLT1A1 LTR MaLR 7 348 -17 23851 45 2 0 chrX 45354887 45358609 -131615531 - L1PA4 LINE L1 0 6155 2382 742 355 77 62 chrX 45359423 45360055 -131614085 - L2 LINE L2 -610 2704 2083 930 124 0 26 chrX 45360055 45360208 -131613932 + L1MA2 LINE L1 6156 6304 0 742 355 77 62 chrX 45360208 45360611 -131613529 - L2 LINE L2 -1231 2083 1688 207 0 0 0 chrX 45360611 45360634 -131613506 + (TG)n Simple_repeat Simple_repeat 1 23 0 742 355 77 62 chrX 45360634 45361047 -131613093 - L2 LINE L2 -1626 1688 1233 1918 85 15 3 chrX 45362137 45363909 -131610231 + L1PA7 LINE L1 4247 6119 -35 301 276 9 9 chrX 45363926 45364042 -131610098 + L1M4 LINE L1 3211 3326 -2820 576 309 19 4 chrX 45364142 45364404 -131609736 + L1M4 LINE L1 4847 5112 -1034 344 212 20 0 chrX 45364409 45364508 -131609632 + L1M LINE L1 5292 5392 -786 8782 177 16 12 chrX 45364550 45367451 -131606689 + L1PB1 LINE L1 3241 6150 -1 266 200 0 0 chrX 45367463 45367518 -131606622 + L1MB4 LINE L1 6124 6178 -2 4582 181 10 7 chrX 45367663 45368528 -131605612 + L1PA16 LINE L1 5290 6157 -9 2743 172 48 2 chrX 45368544 45369080 -131605060 + L1PA16 LINE L1 5602 6162 -4 1566 205 36 23 chrX 45369098 45369236 -131604904 - L1 LINE L1 -3386 3781 3646 2140 167 6 0 chrX 45369236 45369571 -131604569 - MER1B DNA MER1_type 0 337 1 1566 205 36 23 chrX 45369571 45369817 -131604323 - L1 LINE L1 -3521 3646 3392 4073 258 63 31 chrX 45369841 45371786 -131602354 - L1 LINE L1 -3898 3269 1553 1967 315 28 18 chrX 45372025 45372705 -131601435 - L1 LINE L1 -6479 689 3 999 219 15 0 chrX 45372743 45372944 -131601196 - Charlie1a DNA MER1_type -1202 253 50 3193 268 51 13 chrX 45373130 45374021 -131600119 + L1PA13 LINE L1 295 1151 -5646 213 39 0 0 chrX 45374021 45374047 -131600093 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 3193 268 51 13 chrX 45374047 45375005 -131599135 + L1PA13 LINE L1 1151 2684 -4113 7986 256 38 14 chrX 45375010 45377692 -131596448 + L1 LINE L1 3168 5914 -883 3014 49 0 0 chrX 45377691 45378057 -131596083 - L1PA7 LINE L1 -24 6130 5765 * 1270 220 35 3 chrX 45378086 45378404 -131595736 + L1 LINE L1 2690 3017 -4548 1572 224 26 8 chrX 45378406 45379105 -131595035 + L1 LINE L1 4076 5037 -2528 2910 98 2 0 chrX 45379107 45379517 -131594623 + L1PA8 LINE L1 5757 6167 -5 387 188 183 30 chrX 45379547 45379750 -131594390 + L1M3a LINE L1 946 1184 -4771 558 238 16 37 chrX 45379887 45380076 -131594064 + L1 LINE L1 6498 6682 -883 2518 105 0 0 chrX 45380078 45380441 -131593699 - L1PA7 LINE L1 -27 6127 5765 1270 220 35 3 chrX 45380470 45380788 -131593352 + L1M3a LINE L1 1159 1486 -4548 1572 243 21 13 chrX 45380790 45381260 -131592880 + L1M3a LINE L1 2545 3018 -3016 642 172 9 0 chrX 45381522 45381638 -131592502 - MLT2B3 LTR ERVL -433 121 5 268 148 0 0 chrX 45381642 45381703 -131592437 + L1MA7 LINE L1 6231 6291 0 1388 273 41 18 chrX 45381722 45382423 -131591717 + L1M3c LINE L1 1129 1832 -4379 672 83 39 32 chrX 45382433 45382589 -131591551 + GA-rich Low_complexity Low_complexity 2 158 0 1557 258 81 25 chrX 45382592 45383336 -131590804 + L1M1 LINE L1 2849 3633 -3932 213 132 0 0 chrX 45383340 45383378 -131590762 + (TA)n Simple_repeat Simple_repeat 1 38 0 2826 161 15 0 chrX 45383378 45383855 -131590285 - L1PB3 LINE L1 -17 6137 5654 2461 305 132 23 chrX 45383879 45384081 -131590059 + L1M1 LINE L1 3656 3835 -3730 1686 192 3 7 chrX 45384081 45384389 -131589751 + AluJb SINE Alu 1 307 -5 2461 305 132 23 chrX 45384389 45385456 -131588684 + L1M1 LINE L1 3835 5063 -2502 7203 262 49 36 chrX 45385459 45389951 -131584189 + L1M2 LINE L1 9 4558 -2290 25283 71 1 0 chrX 45390027 45394350 -131579790 + L1PA5 LINE L1 2064 6150 -4 244 174 41 133 chrX 45394351 45394449 -131579691 - L1M1 LINE L1 -4246 3319 3231 2410 231 40 5 chrX 45394550 45395243 -131578897 - L1M1 LINE L1 -4758 2807 2123 326 295 6 39 chrX 45395416 45395572 -131578568 - MER83B-int LTR ERV1 -480 4474 4324 216 0 0 0 chrX 45395640 45395664 -131578476 + (T)n Simple_repeat Simple_repeat 1 24 0 5974 195 96 11 chrX 45395989 45397505 -131576635 - MER83B-int LTR ERV1 -62 6269 4625 12199 243 38 20 chrX 45397513 45401726 -131572414 + L1PA15 LINE L1 1 4133 -2683 189 0 0 0 chrX 45401726 45401747 -131572393 + (CAA)n Simple_repeat Simple_repeat 3 23 0 12199 243 38 20 chrX 45401747 45402212 -131571928 + L1PA15 LINE L1 4133 4588 -2228 276 30 0 0 chrX 45402212 45402245 -131571895 + (CAA)n Simple_repeat Simple_repeat 1 33 0 12199 243 38 20 chrX 45402245 45404251 -131569889 + L1PA15 LINE L1 4588 6810 -6 4158 194 58 43 chrX 45404255 45405495 -131568645 - MER83B-int LTR ERV1 -1572 4691 3475 2954 204 15 0 chrX 45405499 45406043 -131568097 - MER41D LTR ERV1 -5 552 1 2475 150 42 25 chrX 45406043 45406622 -131567518 - MER83B-int LTR ERV1 -2096 2784 2317 286 181 349 0 chrX 45406618 45406701 -131567439 - MER83B-int LTR ERV1 -4144 979 868 * 496 272 0 0 chrX 45406690 45406793 -131567347 - MER83B-int LTR ERV1 -3737 2209 2107 362 190 184 74 chrX 45406783 45406871 -131567269 - MER83B-int LTR ERV1 -2594 2286 2209 * 387 0 0 0 chrX 45406871 45406914 -131567226 + (CA)n Simple_repeat Simple_repeat 2 44 0 362 190 184 74 chrX 45406914 45406988 -131567152 - MER83B-int LTR ERV1 -2671 2209 2106 226 344 16 0 chrX 45407023 45407087 -131567053 - tRNA-Glu-GAG tRNA tRNA -3 72 8 39785 79 3 2 chrX 45407272 45413412 -131560728 - L1PA5 LINE L1 0 6154 11 1995 139 14 3 chrX 45413932 45414276 -131559864 + L1MA2 LINE L1 5957 6304 0 5527 254 30 20 chrX 45415336 45416192 -131557948 - L1PA12 LINE L1 -2514 5070 4224 3883 121 29 5 chrX 45416192 45416465 -131557675 + L1PB1 LINE L1 5508 5773 -378 201 74 0 0 chrX 45416465 45416492 -131557648 + (TA)n Simple_repeat Simple_repeat 2 28 0 3883 121 29 5 chrX 45416492 45416845 -131557295 + L1PB1 LINE L1 5773 6149 -2 5527 254 30 20 chrX 45416845 45418665 -131555475 - L1PA12 LINE L1 -3360 4224 2358 233 385 34 8 chrX 45419054 45419171 -131554969 + L2 LINE L2 2940 3059 -213 227 264 192 27 chrX 45420241 45420379 -131553761 - MIR SINE MIR -53 155 5 2162 193 67 38 chrX 45420567 45420930 -131553210 - L1 LINE L1 -2718 3428 3077 1387 215 3 21 chrX 45420930 45421241 -131552899 - AluJo SINE Alu 0 308 3 2162 193 67 38 chrX 45421241 45421408 -131552732 - L1 LINE L1 -3069 3077 2916 2078 130 0 10 chrX 45421408 45421716 -131552424 - AluSx SINE Alu -5 307 3 2162 193 67 38 chrX 45421716 45421840 -131552300 - L1 LINE L1 -3230 2916 2752 495 129 0 0 chrX 45421840 45421925 -131552215 - L1MA4A LINE L1 -23 6280 6196 2028 197 50 14 chrX 45421932 45422414 -131551726 - L1MA4A LINE L1 -181 6122 5624 619 188 17 0 chrX 45422414 45422531 -131551609 + MSTA LTR MaLR 298 416 -12 2418 258 22 14 chrX 45422563 45423393 -131550747 - L1 LINE L1 -2865 3281 2446 1066 239 58 0 chrX 45423396 45423672 -131550468 + L1 LINE L1 3449 3740 -2406 * 2837 97 0 0 chrX 45423663 45424045 -131550095 - L1P3 LINE L1 -5236 1225 844 6271 68 50 3 chrX 45424047 45424993 -131549147 + L1PA7 LINE L1 5164 6152 -2 830 269 57 13 chrX 45425003 45425319 -131548821 - L1MC4 LINE L1 -260 7782 7453 742 252 31 4 chrX 45425332 45425558 -131548582 - L1MC4 LINE L1 -663 7379 7148 182 77 39 39 chrX 45425567 45425619 -131548521 + (TA)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chrX 45426500 45426521 -131547619 + AT_rich Low_complexity Low_complexity 1 21 0 520 331 11 6 chrX 45426545 45426720 -131547420 - MIR SINE MIR -47 215 40 2409 231 54 33 chrX 45426929 45428183 -131545957 - L1MB7 LINE L1 -5 6161 4848 2125 321 76 55 chrX 45428197 45429472 -131544668 + L1M3b LINE L1 1 1302 -4979 399 271 84 92 chrX 45430196 45430469 -131543671 + L1PBb LINE L1 796 1066 -5783 5123 213 65 17 chrX 45430753 45431064 -131543076 + L1PBb LINE L1 1117 1412 -5436 2211 96 3 34 chrX 45431064 45431387 -131542753 + AluSp SINE Alu 1 313 0 5123 213 65 17 chrX 45431387 45432440 -131541700 + L1PBb LINE L1 1412 2634 -4214 21 0 0 0 chrX 45432440 45432461 -131541679 + AT_rich Low_complexity Low_complexity 1 21 0 9919 152 29 60 chrX 45432461 45434766 -131539374 + L1PA8 LINE L1 10 2299 -4162 4233 62 0 0 chrX 45434762 45435314 -131538826 - L1PA5 LINE L1 -2363 3783 3232 * 12739 41 1 6 chrX 45435314 45437684 -131536456 + L1PA5 LINE L1 3772 6154 0 21 36 0 0 chrX 45437910 45437938 -131536202 + AT_rich Low_complexity Low_complexity 1 28 0 13778 131 18 3 chrX 45437938 45440974 -131533166 + L1PA8 LINE L1 3437 6481 -6 4245 248 34 36 chrX 45440974 45442748 -131531392 + L1PBb LINE L1 2651 4407 -2441 * 39731 77 3 0 chrX 45442746 45448045 -131526095 - L1P LINE L1 -822 5324 11 504 268 53 9 chrX 45448473 45448701 -131525439 - L1MEc LINE L1 -3988 2408 2171 208 203 16 16 chrX 45448713 45448777 -131525363 + (TA)n Simple_repeat Simple_repeat 1 64 0 216 0 0 0 chrX 45448989 45449013 -131525127 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 252 0 0 0 chrX 45449012 45449040 -131525100 + (GA)n Simple_repeat Simple_repeat 2 29 0 8858 236 23 21 chrX 45449166 45453015 -131521125 + L1PA16 LINE L1 2311 6166 0 2579 101 19 3 chrX 45453097 45453474 -131520666 - L1PA13 LINE L1 -2 6161 5779 392 245 7 0 chrX 45453840 45453983 -131520157 + (TA)n Simple_repeat Simple_repeat 1 144 0 35 54 0 0 chrX 45453983 45454039 -131520101 + AT_rich Low_complexity Low_complexity 1 56 0 306 93 70 0 chrX 45454042 45454128 -131520012 + (TA)n Simple_repeat Simple_repeat 2 93 0 7757 246 29 37 chrX 45454155 45457432 -131516708 - L1 LINE L1 -1734 5114 1819 1830 159 35 3 chrX 45457432 45457722 -131516418 + AluSx SINE Alu 3 301 -11 7757 246 29 37 chrX 45457722 45457979 -131516161 - L1 LINE L1 -5029 1819 1561 1064 220 62 0 chrX 45458055 45458328 -131515812 + L1MA3 LINE L1 6016 6305 0 374 270 72 0 chrX 45458910 45459021 -131515119 - MIR SINE MIR -75 187 69 244 346 19 62 chrX 45459397 45459559 -131514581 + L2 LINE L2 2904 3058 -214 252 215 0 31 chrX 45459947 45460012 -131514128 + L1M3c LINE L1 1 63 -6078 216 130 0 0 chrX 45460012 45460058 -131514082 + (A)n Simple_repeat Simple_repeat 1 46 0 3740 245 131 7 chrX 45460493 45461603 -131512537 + ERVL LTR ERVL 789 2088 -3676 11269 231 34 38 chrX 45461618 45462449 -131511691 - L1PB4 LINE L1 -2 6870 6037 2393 73 0 13 chrX 45462449 45462752 -131511388 - AluY SINE Alu -12 299 1 11269 231 34 38 chrX 45462752 45466655 -131507485 - L1PB4 LINE L1 -835 6037 2073 1238 259 106 35 chrX 45466877 45467931 -131506209 - L1M4b LINE L1 -4422 2716 1423 554 215 0 27 chrX 45467941 45468090 -131506050 - L1PA16 LINE L1 0 6481 6337 848 247 7 25 chrX 45468090 45468365 -131505775 - L1PA16 LINE L1 -835 5626 5357 5852 93 4 5 chrX 45468379 45469209 -131504931 - L1PA8 LINE L1 -8 6164 5336 * 21391 143 24 12 chrX 45469203 45474278 -131499862 - L1PA16 LINE L1 -1210 5251 1 1104 96 51 0 chrX 45474299 45474456 -131499684 - AluSg/x SINE Alu -13 299 135 11832 259 21 12 chrX 45474466 45478676 -131495464 - L1PA12 LINE L1 -1111 6473 2228 470 203 0 34 chrX 45479454 45479572 -131494568 - L1M4b LINE L1 -5434 1425 1312 228 306 0 14 chrX 45479645 45479717 -131494423 - L1M4b LINE L1 -6089 770 700 681 286 43 31 chrX 45479864 45480119 -131494021 - L1M4b LINE L1 -6584 275 18 285 291 31 39 chrX 45480155 45480282 -131493858 - L2 LINE L2 0 3272 3147 304 221 74 63 chrX 45480404 45480499 -131493641 + MER117 DNA MER1_type 102 197 0 399 323 188 50 chrX 45481055 45481433 -131492707 + L2 LINE L2 2824 3253 -19 248 287 186 16 chrX 45481527 45481656 -131492484 + MIR SINE MIR 15 165 -97 * 655 296 22 27 chrX 45481631 45481854 -131492286 + MIR SINE MIR 9 230 -32 2011 126 4 0 chrX 45482842 45483119 -131491021 + AluSq SINE Alu 1 278 -35 365 39 0 19 chrX 45483121 45483173 -131490967 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 333 290 83 21 chrX 45483280 45483425 -131490715 - MIR SINE MIR -56 206 53 243 261 130 11 chrX 45483808 45483900 -131490240 + MIR SINE MIR 81 183 -79 1460 182 74 0 chrX 45484537 45484795 -131489345 + AluJb SINE Alu 1 277 -35 6180 125 5 13 chrX 45484799 45485696 -131488444 + THE1-int LTR MaLR 430 1318 -262 1855 211 62 17 chrX 45485934 45486397 -131487743 + L1MB8 LINE L1 5675 6173 -5 3954 272 37 5 chrX 45486408 45488076 -131486064 + L1M1 LINE L1 18 2415 -5150 24367 93 11 4 chrX 45488089 45491459 -131482681 + L1P LINE L1 12 3404 -2742 2981 253 51 99 chrX 45491566 45493220 -131480920 - L1PA15-16 LINE L1 -3993 2869 1296 887 348 31 60 chrX 45493194 45494621 -131479519 - L1PA15-16 LINE L1 -5440 1423 39 * 3921 198 28 14 chrX 45494843 45495584 -131478556 + ERVL LTR ERVL 2087 2838 -2926 452 193 36 0 chrX 45495609 45495692 -131478448 + ERVL LTR ERVL 4516 4601 -1163 1058 221 136 36 chrX 45495697 45496028 -131478112 + MLT1B LTR MaLR 4 367 -23 1463 143 0 34 chrX 45496028 45496265 -131477875 - AluSg SINE Alu -81 229 1 577 194 19 39 chrX 45496294 45496420 -131477720 + L1MA4 LINE L1 5913 6037 -263 13309 37 3 0 chrX 45496420 45498705 -131475435 + L1PA3 LINE L1 3865 6151 -4 577 194 19 39 chrX 45498705 45498733 -131475407 + L1MA4 LINE L1 6037 6064 -236 30143 122 11 61 chrX 45498735 45505217 -131468923 + L1PA7 LINE L1 3 6152 -2 1330 160 4 37 chrX 45505217 45505465 -131468675 + L1MA4 LINE L1 6039 6297 -3 28 29 0 0 chrX 45505505 45505540 -131468600 + AT_rich Low_complexity Low_complexity 1 35 0 2912 287 80 27 chrX 45505567 45506714 -131467426 + L1 LINE L1 129 1336 -4805 * 4293 241 68 65 chrX 45506692 45508212 -131465928 + L1 LINE L1 2338 3852 -2358 1721 181 42 6 chrX 45508212 45508543 -131465597 + MER7A DNA MER2_type 6 346 0 4293 241 68 65 chrX 45508543 45508860 -131465280 + L1 LINE L1 3852 4167 -2043 297 0 0 0 chrX 45508860 45508893 -131465247 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4293 241 68 65 chrX 45508893 45509315 -131464825 + L1 LINE L1 4167 4586 -1624 189 0 0 0 chrX 45509315 45509336 -131464804 + (TAA)n Simple_repeat Simple_repeat 2 22 0 4293 241 68 65 chrX 45509336 45509649 -131464491 + L1 LINE L1 4586 5087 -1123 361 391 72 42 chrX 45509735 45510236 -131463904 + L1PBb LINE L1 14 529 -6320 287 406 13 17 chrX 45510377 45510611 -131463529 + L1PBb LINE L1 707 939 -5910 241 161 161 25 chrX 45511007 45511088 -131463052 + L1PBb LINE L1 1472 1563 -5285 1815 223 62 19 chrX 45511093 45511772 -131462368 + L1PB4 LINE L1 710 1512 -4691 2955 99 53 0 chrX 45511818 45512230 -131461910 + LTR17 LTR ERV1 347 780 0 14469 89 12 38 chrX 45512230 45514300 -131459840 + HERV17 LTR ERV1 2 2016 -6610 * 30027 52 2 10 chrX 45514283 45516286 -131457854 + HERV17 LTR ERV1 2430 4393 -4233 2217 113 0 3 chrX 45516286 45516588 -131457552 - AluY SINE Alu -10 301 1 30027 52 2 10 chrX 45516588 45518203 -131455937 + HERV17 LTR ERV1 4393 6019 -2607 2322 90 0 0 chrX 45518237 45518538 -131455602 + HERV17 LTR ERV1 6832 8621 -5 2543 68 3 3 chrX 45518544 45518869 -131455271 + LTR17 LTR ERV1 1 325 -455 1364 218 27 0 chrX 45518869 45519162 -131454978 + L1PB4 LINE L1 1488 1788 -4415 1446 30 0 0 chrX 45519163 45519328 -131454812 - L1PA5 LINE L1 -397 5757 5593 3398 45 8 0 chrX 45519329 45519725 -131454415 + L1PA5 LINE L1 5756 6154 0 4847 237 59 13 chrX 45519726 45521980 -131452160 + L1PB4 LINE L1 1768 4142 -2061 4475 191 48 17 chrX 45525065 45527090 -131447050 + L1PB4 LINE L1 4125 6212 -1 2988 202 57 9 chrX 45527100 45528003 -131446137 + L1MA9 LINE L1 5009 5953 -359 197 205 0 0 chrX 45578112 45578151 -131395989 - L2 LINE L2 -4 3268 3230 695 185 38 22 chrX 45578508 45578692 -131395448 - MER53 DNA DNA 0 189 3 22 0 0 0 chrX 45578767 45578789 -131395351 + AT_rich Low_complexity Low_complexity 1 22 0 376 368 82 21 chrX 45578873 45579213 -131394927 + L1MEc LINE L1 2113 2473 -3923 417 311 134 18 chrX 45579642 45580082 -131394058 + L1MEc LINE L1 2932 3422 -2793 191 171 0 0 chrX 45580134 45580169 -131393971 + L2 LINE L2 3235 3269 -3 545 248 147 0 chrX 45580396 45580553 -131393587 - MIR SINE MIR -4 258 79 198 143 0 0 chrX 45580675 45580710 -131393430 + (TC)n Simple_repeat Simple_repeat 2 36 0 235 206 0 41 chrX 45580737 45580810 -131393330 - L1MC4a LINE L1 -1871 5937 5868 574 273 50 40 chrX 45581357 45581555 -131392585 + MIR SINE MIR 60 259 -3 835 235 18 66 chrX 45581745 45581914 -131392226 - MIR SINE MIR 0 262 109 2517 61 0 3 chrX 45581914 45582225 -131391915 + AluY SINE Alu 1 310 -1 835 235 18 66 chrX 45582225 45582327 -131391813 - MIR SINE MIR -153 109 4 497 56 0 144 chrX 45582438 45582528 -131391612 - MADE1 DNA Mariner 0 80 4 205 372 0 13 chrX 45582688 45582766 -131391374 - L2 LINE L2 -16 3297 3221 267 103 0 0 chrX 45583189 45583228 -131390912 + (GA)n Simple_repeat Simple_repeat 2 40 0 323 290 151 27 chrX 45584017 45584203 -131389937 + MIR SINE MIR 53 261 -1 440 323 194 32 chrX 45584353 45585212 -131388928 + L2 LINE L2 2222 3267 -5 539 260 79 15 chrX 45585600 45585794 -131388346 + MIR SINE MIR 13 208 -54 754 241 73 34 chrX 45585806 45586134 -131388006 - L1MB2 LINE L1 -36 6135 5795 910 140 0 70 chrX 45586138 45586335 -131387805 - AluSg/x SINE Alu 0 323 138 2651 291 47 56 chrX 45586337 45588047 -131386093 + L1PA12 LINE L1 527 2477 -5104 * 5202 140 17 3 chrX 45588022 45588999 -131385141 + L1PA15 LINE L1 6607 7596 -7 3675 185 49 27 chrX 45589274 45590191 -131383949 - L1MD1 LINE L1 -2 6240 5304 458 198 49 110 chrX 45590253 45590516 -131383624 - L1MD1 LINE L1 -1439 4707 4461 2004 211 7 0 chrX 45590517 45590935 -131383205 - L1PA13 LINE L1 -1950 4847 4427 22687 87 4 8 chrX 45590953 45595154 -131378986 - L1PA7 LINE L1 -1 6153 1973 23271 135 11 61 chrX 45595295 45600034 -131374106 - L1P LINE L1 -1643 4503 1 9430 226 96 8 chrX 45600047 45603775 -131370365 - L1PA13 LINE L1 -2358 4439 339 * 11578 172 20 1 chrX 45603773 45605734 -131368406 - L1PA12 LINE L1 -5577 2004 5 3949 209 39 61 chrX 45605742 45608148 -131365992 - L1P4 LINE L1 -382 5781 3433 942 252 5 0 chrX 45608276 45608490 -131365650 - L1MDa LINE L1 -6283 257 43 259 376 86 14 chrX 45608540 45608819 -131365321 + L2 LINE L2 2405 2703 -611 1345 261 78 30 chrX 45608828 45608981 -131365159 - L1ME2 LINE L1 -106 6058 5914 2231 103 0 0 chrX 45608981 45609271 -131364869 - AluSx SINE Alu 0 312 23 1345 261 78 30 chrX 45609271 45610440 -131363700 - L1ME2 LINE L1 -250 5914 4680 25 31 0 0 chrX 45610621 45610653 -131363487 + AT_rich Low_complexity Low_complexity 1 32 0 3095 223 34 21 chrX 45610717 45611545 -131362595 - L1MA9 LINE L1 0 6312 5496 2256 90 3 37 chrX 45611545 45611867 -131362273 + AluY SINE Alu 1 311 0 3095 223 34 21 chrX 45611867 45612861 -131361279 - L1MA9 LINE L1 -816 5496 4369 6385 86 7 0 chrX 45612861 45614030 -131360110 - L1PA7 LINE L1 0 6469 5295 27457 127 12 26 chrX 45614030 45618842 -131355298 - L1PA7 LINE L1 -1394 5067 2 4277 204 31 2 chrX 45618850 45619899 -131354241 - L1MA9 LINE L1 -1771 4375 3296 23 0 0 0 chrX 45619899 45619922 -131354218 + AT_rich Low_complexity Low_complexity 1 23 0 882 154 6 0 chrX 45619928 45620103 -131354037 - L1MA8 LINE L1 -21 6270 6095 371 102 0 0 chrX 45620103 45620162 -131353978 - L1MB8 LINE L1 -2 6176 6118 448 230 0 0 chrX 45620173 45620299 -131353841 - L1 LINE L1 -1700 4446 4321 1036 217 33 65 chrX 45620837 45621374 -131352766 - PABL_B LTR ERV1 -4 663 1 198 0 0 0 chrX 45621747 45621769 -131352371 + (A)n Simple_repeat Simple_repeat 1 22 0 2410 91 3 0 chrX 45621783 45622092 -131352048 - AluSp SINE Alu -3 310 1 190 390 40 0 chrX 45622434 45622534 -131351606 + L2 LINE L2 3167 3270 -43 488 270 131 22 chrX 45622767 45622989 -131351151 + MLT1J LTR MaLR 117 362 -149 255 103 0 0 chrX 45623060 45623099 -131351041 + (GA)n Simple_repeat Simple_repeat 2 40 0 1437 280 94 0 chrX 45623418 45623908 -131350232 + Cheshire DNA MER1_type 2 537 -1883 18273 139 19 85 chrX 45623927 45628097 -131346043 - L1P LINE L1 -2240 3906 12 3732 113 15 27 chrX 45628120 45628722 -131345418 - L1P3 LINE L1 -5159 1302 708 1849 124 10 0 chrX 45628722 45629013 -131345127 + L1PB2 LINE L1 5857 6150 -1 1085 211 178 0 chrX 45629062 45629399 -131344741 - L1P LINE L1 -795 5351 4955 * 1121 331 32 43 chrX 45629396 45630045 -131344095 + L1PA15 LINE L1 258 899 -5888 * 3251 248 37 22 chrX 45630044 45631278 -131342862 + L1PA15 LINE L1 1295 2567 -4230 492 156 7 96 chrX 45631272 45631433 -131342707 + L1PA15 LINE L1 4117 4259 -2538 * 1837 170 36 97 chrX 45631432 45631908 -131342232 + L1PA15 LINE L1 6357 6803 -13 5527 119 3 3 chrX 45631919 45632946 -131341194 - L1PA13 LINE L1 -4 6159 5111 25 0 0 0 chrX 45632954 45632979 -131341161 + AT_rich Low_complexity Low_complexity 1 25 0 4161 212 11 16 chrX 45633250 45634858 -131339282 + L1MA6 LINE L1 4696 6300 0 495 221 102 0 chrX 45634879 45635006 -131339134 + Cheshire DNA MER1_type 1727 1866 -554 388 194 10 10 chrX 45635014 45635112 -131339028 + Cheshire DNA MER1_type 2054 2151 -269 * 1582 180 6 38 chrX 45635109 45635453 -131338687 + MER49 LTR ERV1 177 509 -414 1755 158 37 0 chrX 45635526 45635798 -131338342 - AluSx SINE Alu -30 282 1 2088 119 25 0 chrX 45635799 45636119 -131338021 + MER1A DNA MER1_type 100 427 -102 24 0 0 0 chrX 45636397 45636421 -131337719 + AT_rich Low_complexity Low_complexity 1 24 0 376 226 168 0 chrX 45636434 45636571 -131337569 + MER53 DNA DNA 30 189 0 1764 141 11 25 chrX 45636620 45636935 -131337205 + AluSx SINE Alu 3 313 0 236 261 45 0 chrX 45637169 45637257 -131336883 - MLT1J LTR MaLR -34 477 386 681 247 31 49 chrX 45638798 45639021 -131335119 + MIR SINE MIR 8 226 -36 605 311 53 82 chrX 45639440 45639483 -131334657 + L1MEd LINE L1 858 901 -5515 381 22 0 0 chrX 45639483 45639529 -131334611 + (CA)n Simple_repeat Simple_repeat 2 47 0 605 311 53 82 chrX 45639529 45640010 -131334130 + L1MEd LINE L1 901 1367 -5049 274 231 19 37 chrX 45640012 45640120 -131334020 + L1MEd LINE L1 1226 1331 -5095 228 348 113 39 chrX 45640306 45640800 -131333340 - L2 LINE L2 -2225 1089 559 2386 264 79 18 chrX 45641903 45642879 -131331261 + L1PB1 LINE L1 12 1046 -5817 7935 178 36 2 chrX 45642883 45645692 -131328448 + L1PB1 LINE L1 1094 4137 -2725 2447 93 31 83 chrX 45645699 45646119 -131328021 - MER48 LTR ERV1 0 398 1 1328 82 0 0 chrX 45646119 45646302 -131327838 - HERVH48 LTR ERV1 0 6654 6472 * 29834 38 13 1 chrX 45646290 45650101 -131324039 - HERVH48 LTR ERV1 -988 5666 1809 7194 62 7 15 chrX 45650110 45651236 -131322904 - HERVH48 LTR ERV1 -5464 1190 1 2485 120 30 33 chrX 45651237 45651636 -131322504 - MER48 LTR ERV1 0 398 1 7218 180 38 7 chrX 45651641 45653913 -131320227 + L1PB1 LINE L1 4146 6521 -346 1053 127 0 0 chrX 45653913 45654079 -131320061 + (TA)n Simple_repeat Simple_repeat 1 166 0 7218 180 38 7 chrX 45654079 45654437 -131319703 + L1PB1 LINE L1 6521 6866 -1 23 33 0 0 chrX 45654437 45654467 -131319673 + AT_rich Low_complexity Low_complexity 1 30 0 5603 113 0 18 chrX 45654589 45654628 -131319512 - L1PA8 LINE L1 -16 6156 6118 261 0 0 0 chrX 45654628 45654657 -131319483 + (TA)n Simple_repeat Simple_repeat 1 29 0 5603 113 0 18 chrX 45654657 45655620 -131318520 - L1PA8 LINE L1 -54 6118 5126 1810 130 0 8 chrX 45655889 45656142 -131317998 + AluSg SINE Alu 53 303 -7 4602 252 36 4 chrX 45656149 45657587 -131316553 + L1M2 LINE L1 2723 4231 -2617 180 0 0 0 chrX 45657587 45657607 -131316533 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4602 252 36 4 chrX 45657607 45657806 -131316334 + L1M2 LINE L1 4231 4422 -2426 1456 289 30 27 chrX 45657807 45658316 -131315824 - L1PA15-16 LINE L1 -4712 2137 1631 1335 211 20 14 chrX 45658316 45658610 -131315530 - AluJo SINE Alu -16 296 1 1456 289 30 27 chrX 45658610 45659182 -131314958 - L1PA15-16 LINE L1 -5218 1631 899 1700 292 47 15 chrX 45659363 45660306 -131313834 - L1M4 LINE L1 -1550 4596 3624 4614 241 38 16 chrX 45660309 45661512 -131312628 + L1M1 LINE L1 17 1246 -6319 3213 132 12 6 chrX 45661512 45662020 -131312120 + MER9 LTR ERVK 1 511 0 3810 92 11 21 chrX 45662020 45662594 -131311546 + HERVK9 LTR ERVK 1 568 -5348 * 25674 82 2 1 chrX 45662592 45666078 -131308062 + HERVK9 LTR ERVK 1424 4915 -1001 4132 103 0 0 chrX 45666072 45666664 -131307476 + HERVK9 LTR ERVK 5043 5634 -282 * 2012 64 8 0 chrX 45666759 45667026 -131307114 + HERVK9 LTR ERVK 5635 5903 -13 3362 120 10 8 chrX 45667036 45667546 -131306594 + MER9 LTR ERVK 1 511 0 10410 196 33 45 chrX 45667546 45669159 -131304981 + L1M1 LINE L1 1239 2870 -4695 1849 125 8 0 chrX 45669159 45669423 -131304717 - AluSg1 SINE Alu -43 266 1 10410 196 33 45 chrX 45669423 45669887 -131304253 + L1M1 LINE L1 2870 3338 -4227 2164 128 3 3 chrX 45669887 45670184 -131303956 + AluSc SINE Alu 1 297 -12 10410 196 33 45 chrX 45670184 45671413 -131302727 + L1M1 LINE L1 3338 4516 -3049 12405 154 31 12 chrX 45671429 45673790 -131300350 + L1PB1 LINE L1 1 2407 -4456 8593 183 32 6 chrX 45673798 45675581 -131298559 + L1PB1 LINE L1 3768 5503 -1379 249 83 0 0 chrX 45675581 45675617 -131298523 + (CA)n Simple_repeat Simple_repeat 2 37 0 8593 183 32 6 chrX 45675617 45676838 -131297302 + L1PB1 LINE L1 5503 5138 -1744 7710 88 9 9 chrX 45676838 45677909 -131296231 - MER11C LTR ERVK 0 1071 1 8593 183 32 6 chrX 45677909 45679702 -131294438 + L1PB1 LINE L1 5137 6882 0 10328 144 15 23 chrX 45679712 45681789 -131292351 + L1PA8 LINE L1 9 2075 -4386 14634 134 11 14 chrX 45681789 45685008 -131289132 + L1PA8 LINE L1 3247 6472 -15 486 75 0 0 chrX 45685008 45685075 -131289065 + (CA)n Simple_repeat Simple_repeat 2 68 0 3005 121 29 13 chrX 45685094 45685621 -131288519 + L1MA2 LINE L1 5770 6304 0 386 357 34 11 chrX 45685730 45685999 -131288141 - L1 LINE L1 -2517 3629 3355 3672 50 42 60 chrX 45686031 45687085 -131287055 - MER11A LTR ERVK 0 1266 1 402 274 110 23 chrX 45687116 45687335 -131286805 - L1 LINE L1 -2889 3257 3020 13246 200 43 15 chrX 45687336 45687535 -131286605 - L1PA13 LINE L1 -4 6159 5967 222 91 0 0 chrX 45687535 45687568 -131286572 + (TG)n Simple_repeat Simple_repeat 2 34 0 13246 200 43 15 chrX 45687568 45691633 -131282507 - L1PA13 LINE L1 -196 5967 1793 2006 297 18 29 chrX 45691638 45692905 -131281235 + L1PBa LINE L1 601 1643 -5220 333 0 0 0 chrX 45692949 45692986 -131281154 + (TA)n Simple_repeat Simple_repeat 2 38 0 199 0 0 61 chrX 45693081 45693114 -131281026 + (TTA)n Simple_repeat Simple_repeat 3 33 0 8682 241 27 14 chrX 45693125 45697463 -131276677 + L1PB3 LINE L1 238 4685 -1518 3765 142 49 65 chrX 45697504 45698273 -131275867 + LTR1 LTR ERV1 29 785 0 5338 157 11 14 chrX 45698273 45699554 -131274586 + L1PB3 LINE L1 4671 5954 -257 1905 141 0 18 chrX 45699554 45699838 -131274302 + AluSx SINE Alu 1 279 -33 243 0 0 0 chrX 45699839 45699866 -131274274 + (CA)n Simple_repeat Simple_repeat 2 28 0 5338 157 11 14 chrX 45699866 45700124 -131274016 + L1PB3 LINE L1 5953 6211 0 971 179 73 0 chrX 45700133 45700321 -131273819 + L1MB2 LINE L1 5699 5907 -264 207 0 0 0 chrX 45700321 45700344 -131273796 + (CAA)n Simple_repeat Simple_repeat 2 24 0 971 179 73 0 chrX 45700344 45700373 -131273767 + L1MB2 LINE L1 5907 5932 -239 980 214 0 0 chrX 45700377 45700550 -131273590 + AluJb SINE Alu 85 257 -55 310 192 13 13 chrX 45700576 45700654 -131273486 + L1MC3 LINE L1 5865 5942 -2053 327 25 0 0 chrX 45700654 45700694 -131273446 + (TG)n Simple_repeat Simple_repeat 2 41 0 1423 204 49 17 chrX 45700706 45700994 -131273146 - MLT2D LTR ERVL -48 366 64 657 0 0 0 chrX 45700994 45701067 -131273073 + (TA)n Simple_repeat Simple_repeat 2 74 0 1423 204 49 17 chrX 45701067 45701126 -131273014 - MLT2D LTR ERVL -350 64 8 2358 198 138 52 chrX 45701128 45701258 -131272882 + L1MC3 LINE L1 5948 6065 -1720 1578 177 40 82 chrX 45701258 45701660 -131272480 + MLT1B LTR MaLR 4 388 -2 2358 198 138 52 chrX 45701660 45702143 -131271997 + L1MC3 LINE L1 6065 6655 -1130 282 29 0 0 chrX 45702143 45702178 -131271962 + (TG)n Simple_repeat Simple_repeat 2 36 0 2358 198 138 52 chrX 45702178 45702403 -131271737 + L1MC3 LINE L1 6655 6859 -926 3090 180 62 83 chrX 45703995 45704797 -131269343 - LTR1 LTR ERV1 0 785 1 5453 34 0 1 chrX 45704863 45705512 -131268628 - L1PA3 LINE L1 -4 6151 5504 39093 50 24 5 chrX 45706677 45712714 -131261426 + L1PA4 LINE L1 3 6155 0 31 0 0 0 chrX 45712730 45712761 -131261379 + AT_rich Low_complexity Low_complexity 1 31 0 4008 227 44 29 chrX 45712763 45715365 -131258775 + L1M1 LINE L1 23 2501 -5064 8453 136 54 12 chrX 45715374 45715991 -131258149 + L1PBa LINE L1 1120 1710 -5152 1991 131 10 30 chrX 45715991 45716296 -131257844 + AluSx SINE Alu 1 299 -13 8453 136 54 12 chrX 45716296 45717638 -131256502 + L1PBa LINE L1 1710 3303 -3559 13247 70 5 10 chrX 45717645 45719481 -131254659 + L1P LINE L1 1 1828 -4318 24 32 0 0 chrX 45721000 45721031 -131253109 + AT_rich Low_complexity Low_complexity 1 31 0 2469 274 128 38 chrX 45721323 45722351 -131251789 + L2 LINE L2 1740 2860 -454 312 167 13 51 chrX 45722357 45722435 -131251705 - MER116 DNA Mariner -5 75 1 319 321 20 4 chrX 45722437 45722560 -131251580 + L2 LINE L2 2861 2983 -289 476 291 19 75 chrX 45722652 45722920 -131251220 - MLT1J2 LTR MaLR 0 450 198 1130 214 19 12 chrX 45722952 45723274 -131250866 - MER33 DNA MER1_type 0 324 1 258 345 7 22 chrX 45723283 45723422 -131250718 - MLT1J1 LTR MaLR -272 174 38 487 239 17 34 chrX 45723507 45723683 -131250457 - L1MD3 LINE L1 -915 7080 6908 2281 113 0 0 chrX 45723683 45723983 -131250157 - AluSg SINE Alu -10 300 1 3051 218 99 39 chrX 45724001 45724721 -131249419 - L1MD3 LINE L1 -743 5403 4728 2132 131 0 0 chrX 45724721 45725018 -131249122 - AluSc SINE Alu -12 297 1 3051 218 99 39 chrX 45725018 45725323 -131248817 - L1MD3 LINE L1 -1418 4728 5432 2253 110 3 0 chrX 45725323 45725622 -131248518 - AluSp SINE Alu 0 313 14 3051 218 99 39 chrX 45725622 45725937 -131248203 - L1MD3 LINE L1 -713 5433 5138 5113 131 18 50 chrX 45725972 45727267 -131246873 - L1PB2 LINE L1 0 6151 4885 436 105 11 11 chrX 45727270 45727365 -131246775 + (TA)n Simple_repeat Simple_repeat 1 95 0 1176 32 0 0 chrX 45727366 45727520 -131246620 - L1PA5 LINE L1 -831 5315 5162 6946 47 1 0 chrX 45727520 45728359 -131245781 + L1PA5 LINE L1 5304 6147 -7 4669 206 21 25 chrX 45728585 45730191 -131243949 + L1PA15 LINE L1 3912 5503 -662 1690 213 0 0 chrX 45730191 45730501 -131243639 + AluJb SINE Alu 1 310 -2 4669 206 21 25 chrX 45730501 45731117 -131243023 + L1PA15 LINE L1 5503 6120 -45 2821 175 18 8 chrX 45731109 45732164 -131241976 + L1M1 LINE L1 4745 5814 -486 * 239 220 0 34 chrX 45732656 45732715 -131241425 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 271 201 56 154 chrX 45736849 45737083 -131237057 + Charlie8 DNA MER1_type 70 280 -2137 1364 304 22 33 chrX 45737203 45738083 -131236057 - L2 LINE L2 -5 3308 2440 511 248 101 46 chrX 45738091 45738329 -131235811 + HERVL40 LTR ERVL 606 856 -4674 2847 7 0 0 chrX 45739177 45739486 -131234654 + AluYb8 SINE Alu 1 309 -9 665 236 0 29 chrX 45739966 45740140 -131234000 + L1MEd LINE L1 37 205 -5914 806 338 126 19 chrX 45740241 45740396 -131233744 + L2 LINE L2 2652 2789 -524 4039 165 83 24 chrX 45740396 45741396 -131232744 + MER106B DNA MER1_type 1 1059 0 806 338 126 19 chrX 45741396 45741838 -131232302 + L2 LINE L2 2789 3313 0 253 250 17 42 chrX 45742481 45742601 -131231539 + L1MC/D LINE L1 5703 5819 -1989 838 273 104 16 chrX 45743426 45743858 -131230282 - MLT1L LTR MaLR -3 612 143 267 326 139 30 chrX 45743922 45744189 -131229951 - MLT1K LTR MaLR -146 442 147 870 269 29 7 chrX 45744396 45744675 -131229465 - L1ME3A LINE L1 -177 5993 5709 355 188 59 0 chrX 45744691 45744776 -131229364 - L1MA10 LINE L1 -1 6333 6244 13026 40 2 0 chrX 45745204 45747555 -131226585 + L1PA4 LINE L1 3800 6152 -3 21 0 0 0 chrX 45747979 45748000 -131226140 + AT_rich Low_complexity Low_complexity 1 21 0 250 216 0 0 chrX 45748208 45748259 -131225881 + L2 LINE L2 3263 3313 0 230 220 0 0 chrX 45748675 45748725 -131225415 + G-rich Low_complexity Low_complexity 4 53 0 339 203 68 127 chrX 45752564 45752800 -131221340 + MER102b DNA MER1_type 70 291 -50 1301 311 18 32 chrX 45752920 45753803 -131220337 - L2 LINE L2 -5 3308 2440 629 229 82 0 chrX 45753811 45753994 -131220146 + HERVL40 LTR ERVL 606 803 -4727 11960 209 39 41 chrX 45753994 45755695 -131218445 + HERVL40 LTR ERVL 1016 2707 -2823 2123 120 24 27 chrX 45755695 45756071 -131218069 + THE1C LTR MaLR 1 375 0 11960 209 39 41 chrX 45756071 45757299 -131216841 + HERVL40 LTR ERVL 2707 3937 -1593 2898 212 113 11 chrX 45757304 45758285 -131215855 - L1MB8 LINE L1 -6 6172 5106 2465 143 0 5 chrX 45758288 45758674 -131215466 - L1PA15 LINE L1 -2 6163 5780 7066 164 7 2 chrX 45758727 45761164 -131212976 - L1PB1 LINE L1 0 6867 4421 2110 168 20 43 chrX 45761170 45761610 -131212530 - LTR3 LTR ERVK -2 430 1 16510 112 18 2 chrX 45761610 45764157 -131209983 - HERVK3 LTR ERVK 0 7243 4657 1339 90 0 0 chrX 45764148 45764336 -131209804 - HERVK3 LTR ERVK -2937 4306 4119 * 11952 119 37 10 chrX 45764323 45767131 -131207009 - HERVK3 LTR ERVK -4333 2910 38 2211 170 7 37 chrX 45767150 45767579 -131206561 - LTR3 LTR ERVK -16 416 1 5090 199 69 3 chrX 45767580 45768069 -131206071 - L1PB1 LINE L1 -2437 4425 3970 260 100 0 20 chrX 45768069 45768119 -131206021 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 5090 199 69 3 chrX 45768119 45769821 -131204319 - L1PB1 LINE L1 -2892 3970 2080 * 28375 116 17 58 chrX 45769801 45776213 -131197927 - L1PA7 LINE L1 -3 6151 12 957 115 23 0 chrX 45776226 45776400 -131197740 - L1PB1 LINE L1 -4756 2107 1930 1310 13 7 0 chrX 45776404 45776557 -131197583 - L1PA2 LINE L1 -10 6145 5992 2754 19 0 0 chrX 45776557 45776882 -131197258 + L1P1 LINE L1 5425 5749 -406 3007 182 77 7 chrX 45776891 45778544 -131195596 - L1PB1 LINE L1 -4946 1917 1 2805 141 21 11 chrX 45778567 45779123 -131195017 - L1P4 LINE L1 -392 6424 5863 593 282 31 14 chrX 45779120 45779407 -131194733 - L1P LINE L1 -3180 2966 2675 * 25056 81 8 2 chrX 45779417 45782971 -131191169 + L1P LINE L1 11 3587 -2559 209 164 36 0 chrX 45783007 45783062 -131191078 + (TA)n Simple_repeat Simple_repeat 1 57 0 14324 209 57 11 chrX 45783074 45788294 -131185846 - L1P4 LINE L1 -1329 5468 1 4669 205 20 25 chrX 45788313 45788962 -131185178 - L1PA15 LINE L1 -13 6152 5501 1690 213 0 0 chrX 45788962 45789272 -131184868 - AluJb SINE Alu -2 310 1 4669 205 20 25 chrX 45789272 45790878 -131183262 - L1PA15 LINE L1 -664 5501 3912 6654 47 1 0 chrX 45791104 45791947 -131182193 - L1PA5 LINE L1 -7 6147 5304 1176 32 0 0 chrX 45791943 45792097 -131182043 + L1PA5 LINE L1 5162 5315 -831 * 436 105 11 11 chrX 45792098 45792193 -131181947 + (TA)n Simple_repeat Simple_repeat 2 96 0 5113 131 18 50 chrX 45792196 45793491 -131180649 + L1PB2 LINE L1 4885 6151 0 3051 218 99 39 chrX 45793526 45793841 -131180299 + L1MD3 LINE L1 5138 5433 -713 2253 110 3 0 chrX 45793841 45794140 -131180000 + AluSp SINE Alu 14 313 0 3051 218 99 39 chrX 45794140 45794445 -131179695 + L1MD3 LINE L1 5433 4729 -1417 2132 131 0 0 chrX 45794445 45794742 -131179398 + AluSc SINE Alu 1 297 -12 3051 218 99 39 chrX 45794742 45795462 -131178678 + L1MD3 LINE L1 4728 5403 -743 2281 113 0 0 chrX 45795480 45795780 -131178360 + AluSg SINE Alu 1 300 -10 487 239 17 34 chrX 45795780 45795956 -131178184 + L1MD3 LINE L1 6908 7080 -915 258 345 7 22 chrX 45796041 45796180 -131177960 + MLT1J1 LTR MaLR 38 174 -272 1130 214 19 12 chrX 45796189 45796511 -131177629 + MER33 DNA MER1_type 1 324 0 476 291 19 75 chrX 45796543 45796811 -131177329 + MLT1J2 LTR MaLR 198 450 0 319 321 20 4 chrX 45796903 45797026 -131177114 - L2 LINE L2 -289 2983 2861 312 167 13 51 chrX 45797028 45797106 -131177034 + MER116 DNA Mariner 1 75 -5 2469 274 128 38 chrX 45797112 45798140 -131176000 - L2 LINE L2 -454 2860 1740 24 32 0 0 chrX 45798432 45798463 -131175677 + AT_rich Low_complexity Low_complexity 1 31 0 448 249 17 70 chrX 45803560 45803801 -131170339 + MER102a DNA MER1_type 98 325 -5 1086 292 18 30 chrX 45803884 45804462 -131169678 - L2 LINE L2 -115 3198 2633 345 314 128 50 chrX 45804486 45804963 -131169177 + L1M4 LINE L1 4820 5333 -813 336 321 52 38 chrX 45805028 45805240 -131168900 + L2 LINE L2 3097 3311 -2 3341 171 10 15 chrX 45805461 45806063 -131168077 - MER7C DNA MER2_type 0 602 4 1223 227 62 16 chrX 45806091 45806604 -131167536 + LTR40a LTR ERVL 44 515 -4 407 309 72 11 chrX 45806624 45806805 -131167335 + HERVL40 LTR ERVL 20 211 -5319 2196 278 84 19 chrX 45806834 45808026 -131166114 + HERVL40 LTR ERVL 1252 2552 -2978 847 117 73 0 chrX 45808043 45808222 -131165918 - L1MA7 LINE L1 0 6291 6100 678 263 23 55 chrX 45809404 45809621 -131164519 - MER63A DNA MER1_type 0 210 1 2159 109 14 0 chrX 45810319 45810613 -131163527 + AluSx SINE Alu 3 300 -12 17100 127 75 12 chrX 45811163 45811980 -131162160 + L1PA3 LINE L1 4 768 -5701 1904 155 6 28 chrX 45811980 45812297 -131161843 - AluSp SINE Alu -3 310 1 17100 127 75 12 chrX 45812297 45813218 -131160922 + L1PA3 LINE L1 768 1630 -4839 2144 110 0 14 chrX 45813218 45813510 -131160630 + AluY SINE Alu 1 288 -23 432 0 0 0 chrX 45813510 45813558 -131160582 + (CA)n Simple_repeat Simple_repeat 2 49 0 17100 127 75 12 chrX 45813558 45817123 -131157017 + L1PA3 LINE L1 1629 5790 -679 4608 104 5 0 chrX 45817144 45817809 -131156331 - L1PA7 LINE L1 -13 6141 5474 4562 76 2 0 chrX 45817809 45818408 -131155732 + L1PA3 LINE L1 5865 6467 -3 222 37 0 0 chrX 45818411 45818438 -131155702 + (A)n Simple_repeat Simple_repeat 1 27 0 23408 68 3 2 chrX 45818439 45821645 -131152495 - L1P LINE L1 -2938 3208 1 15850 110 10 2 chrX 45821646 45824311 -131149829 - L1PA7 LINE L1 -679 5475 2792 311 155 0 0 chrX 45824310 45824368 -131149772 - L1PA7 LINE L1 -4507 1639 1582 * 9861 116 7 2 chrX 45824368 45825826 -131148314 + HERVL-A2 LTR ERVL 1062 2526 -3128 * 17639 97 25 0 chrX 45825825 45828354 -131145786 + HERVL-A2 LTR ERVL 3064 5654 0 1805 170 63 31 chrX 45828354 45828892 -131145248 + MLT2A2 LTR ERVL 1 554 0 283 347 22 22 chrX 45829261 45829480 -131144660 + L1 LINE L1 439 1955 -5254 330 374 44 18 chrX 45829532 45829872 -131144268 + L1PBb LINE L1 57 405 -5799 1849 277 66 32 chrX 45829988 45830313 -131143827 + L1PBb LINE L1 401 713 -5490 2074 132 3 0 chrX 45830313 45830602 -131143538 + AluSx SINE Alu 12 301 -11 270 0 0 0 chrX 45830602 45830632 -131143508 + (TA)n Simple_repeat Simple_repeat 2 31 0 1849 277 66 32 chrX 45830632 45832003 -131142137 + L1PBb LINE L1 712 2135 -4068 19978 132 13 30 chrX 45832063 45836675 -131137465 + L1PA7 LINE L1 1 4629 -1832 6531 104 20 7 chrX 45836676 45838399 -131135741 + L1PA7 LINE L1 4726 6461 -8 1731 260 53 6 chrX 45838421 45839098 -131135042 + L1 LINE L1 3186 3894 -3314 19002 167 24 39 chrX 45839101 45842755 -131131385 + L1PA11 LINE L1 10 3717 -2772 2104 137 0 28 chrX 45842755 45843077 -131131063 + AluSq SINE Alu 1 313 0 19002 167 24 39 chrX 45843077 45844141 -131129999 + L1PA11 LINE L1 3717 4795 -1694 13661 63 64 1 chrX 45844141 45846635 -131127505 + L1PA6 LINE L1 3597 6147 -7 19002 167 24 39 chrX 45846635 45848445 -131125695 + L1PA11 LINE L1 4795 6464 -25 2825 191 12 11 chrX 45848443 45849082 -131125058 + L1P3 LINE L1 4829 5468 -993 * 4838 255 89 25 chrX 45849088 45852477 -131121663 + L1PA15-16 LINE L1 1809 5451 -1398 3800 99 2 0 chrX 45852479 45853032 -131121108 + L1PA12 LINE L1 5572 6125 -43 519 242 0 0 chrX 45853048 45853564 -131120576 + (TA)n Simple_repeat Simple_repeat 1 516 0 360 289 0 0 chrX 45853577 45853667 -131120473 + L1MC4 LINE L1 6614 6703 -1339 * 366 267 0 0 chrX 45853599 45853689 -131120451 - L1MC4 LINE L1 -1339 6703 6614 494 199 6 17 chrX 45853723 45853904 -131120236 + (TA)n Simple_repeat Simple_repeat 1 179 0 280 274 0 21 chrX 45853911 45854006 -131120134 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 3441 164 67 27 chrX 45854016 45855306 -131118834 + L1MA4A LINE L1 4748 6097 -206 388 233 0 0 chrX 45855332 45855418 -131118722 + AluJ/FRAM SINE Alu 217 302 0 1073 185 15 0 chrX 45855470 45855675 -131118465 + L1PB3 LINE L1 5947 6154 0 427 182 31 10 chrX 45855772 45855887 -131118253 + L1M LINE L1 5282 5403 -766 23181 50 2 0 chrX 45856013 45859768 -131114372 + L1PA4 LINE L1 2368 6154 -1 5138 118 26 33 chrX 45859772 45859848 -131114292 + L1MA3 LINE L1 2448 2523 -5042 2092 130 7 0 chrX 45859848 45860148 -131113992 + AluSx SINE Alu 1 302 -10 5138 118 26 33 chrX 45860148 45861062 -131113078 + L1MA3 LINE L1 2523 3431 -4134 4723 162 22 24 chrX 45861059 45861295 -131112845 + L1MA3 LINE L1 5698 5933 -1791 * 2087 116 0 0 chrX 45861295 45861572 -131112568 + AluSx SINE Alu 1 277 -35 243 0 0 0 chrX 45861573 45861600 -131112540 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 330 26 0 0 chrX 45861599 45861638 -131112502 + (TA)n Simple_repeat Simple_repeat 1 39 0 4723 162 22 24 chrX 45861600 45862869 -131111271 + L1MA3 LINE L1 5933 7163 -561 920 28 0 0 chrX 45862869 45862975 -131111165 + L1PA3 LINE L1 6044 6152 -3 4723 162 22 24 chrX 45862975 45863097 -131111043 + L1MA3 LINE L1 7163 7284 -440 457 295 119 0 chrX 46063099 46063292 -130910848 - LTR16C LTR ERVL -12 479 264 33252 65 3 8 chrX 46064360 46068962 -130905178 + L1PA8A LINE L1 739 5323 -808 2225 109 7 0 chrX 46068962 46069255 -130904885 + AluSx SINE Alu 1 295 -17 33252 65 3 8 chrX 46069255 46069429 -130904711 + L1PA8A LINE L1 5323 5496 -635 7257 47 1 2 chrX 46069551 46071058 -130903082 + L1PA5 LINE L1 4649 6154 0 8735 181 21 1 chrX 46071060 46074009 -130900131 + L1MA3 LINE L1 3303 6305 0 4298 153 53 43 chrX 46074004 46074533 -130899607 + L1MA8 LINE L1 5281 5803 -488 * 189 0 0 0 chrX 46074533 46074554 -130899586 + (CA)n Simple_repeat Simple_repeat 2 22 0 4298 153 53 43 chrX 46074554 46074924 -130899216 + L1MA8 LINE L1 5803 6194 -97 455 33 16 0 chrX 46074924 46074985 -130899155 + (TA)n Simple_repeat Simple_repeat 2 63 0 4298 153 53 43 chrX 46074985 46075085 -130899055 + L1MA8 LINE L1 6194 6291 0 2048 114 0 0 chrX 46075497 46075805 -130898335 - AluSg SINE Alu 0 308 1 21 0 0 0 chrX 46075805 46075826 -130898314 + AT_rich Low_complexity Low_complexity 1 21 0 1967 202 44 26 chrX 46076360 46076856 -130897284 - MLT1D LTR MaLR 0 505 1 1949 141 0 24 chrX 46077036 46077334 -130896806 - AluSx SINE Alu -21 291 1 1768 175 31 33 chrX 46078040 46078496 -130895644 + LTR56 LTR ERV1 9 437 0 2576 50 0 0 chrX 46081010 46081308 -130892832 + AluY SINE Alu 1 298 -13 317 303 64 52 chrX 46081632 46082126 -130892014 + LTR56-int LTR ERV1 368 4267 -2824 180 0 0 0 chrX 46083615 46083635 -130890505 + (T)n Simple_repeat Simple_repeat 1 20 0 468 228 0 0 chrX 46084514 46084628 -130889512 + (TA)n Simple_repeat Simple_repeat 2 115 0 873 129 0 0 chrX 46085347 46085486 -130888654 + (TA)n Simple_repeat Simple_repeat 1 139 0 259 203 24 49 chrX 46085913 46086036 -130888104 + LTR56-int LTR ERV1 5721 5840 -918 627 258 19 50 chrX 46086077 46086337 -130887803 + LTR56-int LTR ERV1 4787 5038 -85 1785 197 28 14 chrX 46086466 46086902 -130887238 + LTR56 LTR ERV1 4 445 0 417 305 40 20 chrX 46088183 46088334 -130885806 + MIR3 SINE MIR 21 174 -34 192 345 126 0 chrX 46088423 46088510 -130885630 + L2 LINE L2 3183 3280 -33 216 0 0 0 chrX 46088608 46088632 -130885508 + (A)n Simple_repeat Simple_repeat 1 24 0 4393 19 0 0 chrX 46090801 46091407 -130882733 - L1PA2 LINE L1 -372 5783 5178 3165 8 0 0 chrX 46091407 46091808 -130882332 + L1PA2 LINE L1 5795 6196 0 41548 42 1 2 chrX 46091961 46098083 -130876057 + L1PA4 LINE L1 39 6154 -1 222 336 19 47 chrX 46098113 46098220 -130875920 + MIR3 SINE MIR 94 197 -11 235 273 28 63 chrX 46098565 46098708 -130875432 + MER117 DNA MER1_type 48 185 -12 3429 89 2 2 chrX 46098891 46099364 -130874776 - L1PA8 LINE L1 -14 6158 5686 319 376 64 6 chrX 46099649 46099822 -130874318 + L2 LINE L2 2872 3054 -218 21 0 0 0 chrX 46100042 46100063 -130874077 + AT_rich Low_complexity Low_complexity 1 21 0 398 353 0 0 chrX 46100344 46100460 -130873680 - L2 LINE L2 0 3272 3157 367 312 32 8 chrX 46100618 46100743 -130873397 - MIR SINE MIR -87 175 48 1284 106 32 9 chrX 46100868 46101085 -130873055 - L1MA4A LINE L1 0 6303 6082 441 155 126 0 chrX 46101085 46101188 -130872952 + L1MA4A LINE L1 5941 6056 -247 17822 173 33 14 chrX 46101350 46105862 -130868278 + L1MA1 LINE L1 12 4437 -3284 2256 105 3 13 chrX 46105862 46106192 -130867948 + AluSp SINE Alu 1 313 0 17822 173 33 14 chrX 46106192 46106966 -130867174 + L1MA1 LINE L1 4437 5195 -2526 1919 63 0 8 chrX 46106966 46107217 -130866923 + L1PA5 LINE L1 5903 6154 0 17822 173 33 14 chrX 46107217 46109493 -130864647 + L1MA1 LINE L1 5195 7721 0 13170 175 21 23 chrX 46109521 46114383 -130859757 + L1P3 LINE L1 10 4856 -1605 2634 7 0 0 chrX 46114383 46114715 -130859425 + L1PA2 LINE L1 5841 6174 0 13170 175 21 23 chrX 46114715 46114880 -130859260 + L1P3 LINE L1 4856 5020 -1441 6578 191 19 30 chrX 46114874 46115112 -130859028 + L1PA15 LINE L1 2983 3222 -2943 * 12132 136 7 10 chrX 46115112 46117906 -130856234 + L1PA10 LINE L1 3365 6163 -5 6578 191 19 30 chrX 46117906 46120308 -130853832 + L1PA15 LINE L1 3222 6157 -8 226 175 18 18 chrX 46120511 46120568 -130853572 + L1MC4 LINE L1 7985 8041 -1 24 53 0 0 chrX 46120897 46120935 -130853205 + AT_rich Low_complexity Low_complexity 1 38 0 426 287 122 18 chrX 46121082 46121320 -130852820 + MLT1I LTR MaLR 140 448 -2 14180 87 7 10 chrX 46121544 46124356 -130849784 - L1PA7 LINE L1 -13 6141 3336 394 278 78 74 chrX 46125119 46125247 -130848893 - L1MC4a LINE L1 -1868 5940 5814 2486 47 3 0 chrX 46125247 46125547 -130848593 - AluY SINE Alu -10 301 1 394 278 78 74 chrX 46125547 46125727 -130848413 - L1MC4a LINE L1 -1994 5814 5631 232 273 171 11 chrX 46125860 46125948 -130848192 - MIR SINE MIR 0 262 161 241 161 143 0 chrX 46125956 46126012 -130848128 + HsTC2 DNA Tc2 1 64 -1834 * 788 110 8 31 chrX 46125987 46126114 -130848026 + MER46A DNA MER2_type 112 235 -1 497 326 29 0 chrX 46126138 46126276 -130847864 - MIR SINE MIR -108 154 13 231 260 90 10 chrX 46126350 46126450 -130847690 + L1ME4a LINE L1 5984 6091 -30 732 189 105 34 chrX 46126455 46126751 -130847389 - L1MC5 LINE L1 -36 7925 7609 289 216 54 83 chrX 46126767 46129071 -130845069 - L1MD2 LINE L1 -10 7787 5583 * 508 179 94 9 chrX 46129068 46129174 -130844966 + L1MC4 LINE L1 6627 6741 -1301 1106 216 45 48 chrX 46129235 46129568 -130844572 - L1MC5 LINE L1 -381 7580 7249 23 0 0 0 chrX 46129694 46129717 -130844423 + AT_rich Low_complexity Low_complexity 1 23 0 837 167 0 7 chrX 46130063 46130201 -130843939 + MLT1A1 LTR MaLR 229 365 0 3168 157 19 19 chrX 46130566 46131195 -130842945 + L1MA4 LINE L1 5671 6299 -1 338 340 32 6 chrX 46131295 46131400 -130842740 - MIR SINE MIR -44 218 106 2019 126 0 3 chrX 46131400 46131693 -130842447 + AluJb SINE Alu 1 292 -20 338 340 32 6 chrX 46131693 46131743 -130842397 - MIR SINE MIR -156 106 59 271 301 82 5 chrX 46131782 46131988 -130842152 + L1ME3 LINE L1 5726 5947 -215 22 56 0 0 chrX 46132020 46132056 -130842084 + AT_rich Low_complexity Low_complexity 1 36 0 774 298 70 38 chrX 46132356 46132997 -130841143 - L1ME4a LINE L1 -90 6031 5347 1234 146 9 5 chrX 46133037 46133257 -130840883 - L1MA4 LINE L1 -9 6291 6071 184 273 0 36 chrX 46133278 46133333 -130840807 + MIR SINE MIR 17 69 -193 236 242 0 81 chrX 46134638 46134700 -130839440 + MIR SINE MIR 172 228 -34 730 224 104 37 chrX 46134897 46135138 -130839002 + MIR SINE MIR 1 257 -5 999 248 44 0 chrX 46135433 46135683 -130838457 + MER58 DNA MER1_type 3 263 -2157 267 345 35 0 chrX 46135695 46135782 -130838358 + MLT1J LTR MaLR 334 423 -88 6852 64 12 1 chrX 46136567 46138065 -130836075 - L1PA8 LINE L1 -5 6167 4664 562 106 11 43 chrX 46138065 46138159 -130835981 - L1P LINE L1 -1238 4908 4818 5123 257 99 19 chrX 46138196 46141481 -130832659 + L1MB8 LINE L1 8 3582 -3062 1729 114 42 4 chrX 46141484 46141746 -130832394 + AluSx SINE Alu 41 312 0 4952 255 42 37 chrX 46141793 46144649 -130829491 + L1MB8 LINE L1 3807 6676 0 1374 257 36 64 chrX 46144903 46145576 -130828564 + L1M4 LINE L1 3742 4395 -1751 430 194 0 0 chrX 46145589 46145661 -130828479 - Tigger1 DNA MER2_type -2317 101 30 254 286 33 0 chrX 46145734 46145825 -130828315 + L1MB5 LINE L1 3342 3435 -2711 2230 37 0 0 chrX 46145825 46146094 -130828046 + L1PA3 LINE L1 5887 6155 0 3641 252 42 20 chrX 46146187 46147405 -130826735 + L1MB5 LINE L1 3729 4973 -1173 1342 236 52 31 chrX 46147405 46147824 -130826316 + MSTC LTR MaLR 1 428 0 2805 234 67 141 chrX 46147826 46147871 -130826269 + MSTC-int LTR MaLR 2 49 -1686 2516 107 26 0 chrX 46147871 46148254 -130825886 + L1PA10 LINE L1 5767 6159 -9 2805 234 67 141 chrX 46148254 46148430 -130825710 + MSTC-int LTR MaLR 49 237 -1498 5163 45 0 0 chrX 46148430 46149051 -130825089 + L1PA5 LINE L1 5530 6150 -4 2805 234 67 141 chrX 46149051 46150235 -130823905 + MSTC-int LTR MaLR 237 1303 -432 5131 226 18 18 chrX 46150310 46151932 -130822208 + L1PA13 LINE L1 1163 2789 -4008 3676 96 50 4 chrX 46151932 46152476 -130821664 - L1PA11 LINE L1 0 6174 5606 5131 226 18 18 chrX 46152476 46152537 -130821603 + L1PA13 LINE L1 2789 2849 -3948 1461 129 42 0 chrX 46152608 46152849 -130821291 + L1PA15 LINE L1 5909 6159 -6 1984 202 35 4 chrX 46152873 46153328 -130820812 + L1MB5 LINE L1 5694 6162 -12 436 350 79 10 chrX 46153682 46153885 -130820255 - MIR SINE MIR -37 225 9 2401 178 39 26 chrX 46153962 46154502 -130819638 - MER11A LTR ERVK 0 1266 720 183 333 115 13 chrX 46154530 46154608 -130819532 + L2 LINE L2 3137 3222 -50 320 261 63 9 chrX 46154905 46155016 -130819124 + MER5B DNA MER1_type 51 167 -11 * 591 308 37 28 chrX 46155007 46155221 -130818919 + L2 LINE L2 3093 3308 -5 297 219 14 0 chrX 46155258 46155331 -130818809 + L1M LINE L1 5319 5392 -786 2942 211 36 28 chrX 46155480 46156192 -130817948 + L1MB7 LINE L1 5330 6047 -137 3861 245 55 42 chrX 46158863 46159352 -130814788 - L1PA13 LINE L1 -5796 991 510 2360 78 7 3 chrX 46159352 46159660 -130814480 - AluY SINE Alu -2 309 1 3861 245 55 42 chrX 46159660 46160143 -130813997 - L1PA13 LINE L1 -6277 510 6 2961 174 18 0 chrX 46160158 46160716 -130813424 - L1PB4 LINE L1 -326 5830 5263 3060 209 27 15 chrX 46160720 46161449 -130812691 + L1PB4 LINE L1 4506 5243 -903 4533 177 29 17 chrX 46162510 46163429 -130810711 - L1MA7 LINE L1 -29 6262 5333 5341 124 13 13 chrX 46163557 46164256 -130809884 - L1PA13 LINE L1 0 6163 5486 2002 130 3 0 chrX 46164256 46164541 -130809599 + AluSp SINE Alu 1 286 -27 5341 124 13 13 chrX 46164541 46164859 -130809281 - L1PA13 LINE L1 -676 5487 5170 3547 179 30 1 chrX 46164860 46165552 -130808588 - L1PA13 LINE L1 -1036 5110 4399 526 161 0 0 chrX 46165559 46165646 -130808494 + L1MA4 LINE L1 4089 4175 -1971 276 234 0 0 chrX 46165675 46165739 -130808401 + L1PB4 LINE L1 6068 6131 -25 313 204 57 34 chrX 46165747 46165835 -130808305 - L1MC4 LINE L1 -1339 6703 6614 684 139 46 6 chrX 46165849 46166022 -130808118 + (TA)n Simple_repeat Simple_repeat 1 180 0 327 146 0 0 chrX 46166034 46166089 -130808051 + (TG)n Simple_repeat Simple_repeat 2 56 0 873 209 6 0 chrX 46166098 46166275 -130807865 + L1M1 LINE L1 5442 5619 -681 5160 192 24 12 chrX 46166334 46168408 -130805732 + L1MA4 LINE L1 4195 6294 -6 295 106 21 0 chrX 46168428 46168475 -130805665 - MER92A LTR ERV1 -84 328 281 2957 138 27 8 chrX 46168518 46169045 -130805095 - L1MA3 LINE L1 0 6305 5769 4923 167 19 22 chrX 46169046 46170212 -130803928 - L1PA13 LINE L1 -5 6158 4985 25286 31 2 2 chrX 46170212 46174063 -130800077 - L1PA2 LINE L1 -3 6152 2301 12348 159 46 33 chrX 46174165 46174585 -130799555 + L1 LINE L1 1236 1649 -5916 612 81 0 0 chrX 46174585 46174672 -130799468 + (GA)n Simple_repeat Simple_repeat 2 88 0 12348 159 46 33 chrX 46174672 46177572 -130796568 + L1 LINE L1 1649 4729 -2836 33058 77 4 5 chrX 46177572 46182053 -130792087 + L1P LINE L1 1 4476 -1670 21760 49 49 3 chrX 46182153 46184971 -130789169 - L1P LINE L1 -3198 2948 4 2109 206 43 12 chrX 46184968 46185458 -130788682 - L1PA13 LINE L1 -1147 4999 4495 * 1626 178 47 25 chrX 46185458 46185823 -130788317 + THE1C LTR MaLR 1 373 -2 7786 154 70 40 chrX 46185846 46187359 -130786781 + THE1-int LTR MaLR 21 1580 0 4453 105 9 0 chrX 46187374 46188007 -130786133 + L1PA10 LINE L1 5470 6162 -6 909 123 14 0 chrX 46188007 46188151 -130785989 + L1PA10 LINE L1 6019 6166 -2 1818 243 28 33 chrX 46188173 46188773 -130785367 + L1 LINE L1 5744 6340 -1225 * 23945 86 1 6 chrX 46188769 46192070 -130782070 + L1PA4 LINE L1 2 3286 -2860 12739 43 1 0 chrX 46192070 46194417 -130779723 + L1PA4 LINE L1 3813 6155 0 186 43 0 0 chrX 46194513 46194536 -130779604 + (A)n Simple_repeat Simple_repeat 1 23 0 25 51 0 0 chrX 46194572 46194611 -130779529 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chrX 46194830 46194859 -130779281 + AT_rich Low_complexity Low_complexity 1 29 0 14905 146 17 105 chrX 46194922 46198347 -130775793 + L1P LINE L1 12 3132 -3014 6716 67 19 2 chrX 46198347 46199670 -130774470 + L1PA7 LINE L1 4815 6154 0 342 267 51 106 chrX 46199674 46199700 -130774440 + L1M4 LINE L1 3520 3546 -2600 1929 144 7 10 chrX 46199700 46200005 -130774135 - AluSx SINE Alu -3 309 6 342 267 51 106 chrX 46200005 46200251 -130773889 + L1M4 LINE L1 3546 3777 -2369 194 36 83 60 chrX 46200279 46200363 -130773777 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 272 144 48 29 chrX 46200398 46200502 -130773638 + (TTATA)n Simple_repeat Simple_repeat 2 107 0 374 262 101 7 chrX 46200518 46200667 -130773473 + L1ME3A LINE L1 4888 5050 -1096 322 216 52 90 chrX 46200667 46200801 -130773339 - MLT1H LTR MaLR 0 549 421 321 298 83 66 chrX 46200844 46201091 -130773049 - MLT1I LTR MaLR -197 212 33 247 254 0 0 chrX 46201114 46201173 -130772967 + L1ME3A LINE L1 5051 5109 -1037 350 229 305 0 chrX 46201288 46201419 -130772721 + L1ME3A LINE L1 5348 5518 -644 * 968 245 28 56 chrX 46201413 46201768 -130772372 + L1ME3A LINE L1 5820 6164 -6 1453 161 0 0 chrX 46201848 46202072 -130772068 - AluJb SINE Alu -19 293 70 272 278 26 9 chrX 46202082 46202197 -130771943 + L1M4 LINE L1 3829 3945 -2201 359 333 0 16 chrX 46202559 46202688 -130771452 - MER94 DNA DNA -3 131 5 2766 194 27 20 chrX 46202799 46203247 -130770893 - L1MC3 LINE L1 -21 7764 7310 1639 214 82 10 chrX 46203247 46203648 -130770492 + MSTB1 LTR MaLR 1 430 -2 2766 194 27 20 chrX 46203648 46203798 -130770342 - L1MC3 LINE L1 -475 7310 7162 * 13532 40 4 1 chrX 46203796 46205469 -130768671 - L1PA4 LINE L1 -850 5296 3619 6976 40 1 2 chrX 46205442 46206289 -130767851 + L1PA4 LINE L1 5310 6155 0 * 257 316 20 41 chrX 46206372 46206470 -130767670 + MIR SINE MIR 56 151 -57 23 33 0 0 chrX 46206557 46206587 -130767553 + AT_rich Low_complexity Low_complexity 1 30 0 440 242 0 0 chrX 46206587 46206678 -130767462 - L1MC3 LINE L1 -615 7170 7080 229 251 146 18 chrX 46206914 46207085 -130767055 - L1 LINE L1 -1672 4474 4282 350 69 0 35 chrX 46207175 46207233 -130766907 - MLT2A1 LTR ERVL 0 444 389 37 0 0 0 chrX 46207233 46207270 -130766870 + AT_rich Low_complexity Low_complexity 1 37 0 445 38 119 6 chrX 46207270 46207430 -130766710 + (TA)n Simple_repeat Simple_repeat 2 179 0 340 92 99 0 chrX 46207442 46207684 -130766456 + (TA)n Simple_repeat Simple_repeat 1 266 0 570 202 34 0 chrX 46207684 46207803 -130766337 + FRAM SINE Alu 43 165 -11 246 214 143 0 chrX 46207846 46207930 -130766210 - L1MC4 LINE L1 -1330 6712 6617 * 253 289 22 0 chrX 46207859 46207949 -130766191 + L1MC4 LINE L1 6614 6705 -1337 326 73 0 36 chrX 46207953 46208008 -130766132 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 270 239 0 22 chrX 46208009 46208101 -130766039 + L1MC4 LINE L1 6614 6703 -1339 257 247 0 43 chrX 46208073 46208166 -130765974 - L1MC4 LINE L1 -1339 6703 6615 * 230 232 0 63 chrX 46208116 46208211 -130765929 + L1MC4 LINE L1 6615 6703 -1339 * 648 244 0 0 chrX 46208224 46208404 -130765736 + (TA)n Simple_repeat Simple_repeat 1 180 0 305 186 34 0 chrX 46208408 46208467 -130765673 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 253 267 0 22 chrX 46208467 46208557 -130765583 + L1MC4 LINE L1 6614 6701 -1341 230 255 0 43 chrX 46208525 46208619 -130765521 - L1MC4 LINE L1 -1339 6703 6614 * 233 217 22 43 chrX 46208640 46208732 -130765408 + L1MC4 LINE L1 6614 6703 -1339 253 98 0 0 chrX 46208734 46208775 -130765365 - MLT2A1 LTR ERVL -44 400 360 203 194 0 0 chrX 46208775 46208811 -130765329 + (TA)n Simple_repeat Simple_repeat 2 37 0 3174 65 0 2 chrX 46208812 46209210 -130764930 - MLT2A1 LTR ERVL -45 399 3 17335 74 3 2 chrX 46209212 46212468 -130761672 - HERVL-A1 LTR ERVL 0 5654 2401 753 82 0 0 chrX 46212483 46212581 -130761559 - MLT2A1 LTR ERVL -346 98 1 17557 79 41 6 chrX 46212627 46214956 -130759184 - HERVL-A1 LTR ERVL -3242 2412 2 348 77 0 154 chrX 46214957 46215022 -130759118 - MLT2A2 LTR ERVL 0 453 390 244 156 0 0 chrX 46214999 46215044 -130759096 + LTR66 LTR ERVL 394 438 -172 * 231 167 0 0 chrX 46215044 46215086 -130759054 + (CA)n Simple_repeat Simple_repeat 1 42 0 3200 79 2 0 chrX 46215087 46215490 -130758650 - MLT2A1 LTR ERVL -40 404 1 324 0 0 0 chrX 46216659 46216695 -130757445 + (CA)n Simple_repeat Simple_repeat 2 37 0 498 124 0 0 chrX 46219597 46219686 -130754454 + (TG)n Simple_repeat Simple_repeat 2 90 0 30 27 0 0 chrX 46219724 46219761 -130754379 + AT_rich Low_complexity Low_complexity 1 37 0 452 310 26 15 chrX 46220196 46220334 -130753806 - MIR SINE MIR -67 141 20 1329 93 27 67 chrX 46221134 46221359 -130752781 - L1MD1 LINE L1 -16 6226 6011 4532 123 15 0 chrX 46221359 46222014 -130752126 + L1MA4 LINE L1 5617 6299 -1 668 250 54 5 chrX 46222015 46222199 -130751941 - L1M4 LINE L1 -1284 4862 4670 2304 115 0 0 chrX 46222820 46223132 -130751008 + AluSq SINE Alu 1 312 -1 3365 89 27 18 chrX 46223453 46223902 -130750238 + MLT2A2 LTR ERVL 1 453 0 283 290 47 0 chrX 46224713 46224820 -130749320 + MIR SINE MIR 98 209 -53 2154 89 43 0 chrX 46225111 46225391 -130748749 - AluSc SINE Alu -13 296 5 383 235 80 93 chrX 46225836 46226138 -130748002 + L1ME LINE L1 5526 5823 -298 246 340 37 16 chrX 46226297 46226488 -130747652 + HAL1 LINE L1 1332 1526 -981 1694 171 0 48 chrX 46226513 46226823 -130747317 - AluJo SINE Alu -15 297 3 341 275 49 0 chrX 46226826 46226968 -130747172 + L1ME4a LINE L1 2869 3017 -3129 17036 35 0 0 chrX 46226975 46229665 -130744475 - L1PA4 LINE L1 0 6155 3469 16107 41 6 0 chrX 46229665 46231636 -130742504 + L1P LINE L1 1452 3434 -2712 228 296 84 30 chrX 46231720 46231830 -130742310 + L1ME4a LINE L1 3099 3202 -2944 4291 145 49 1 chrX 46231830 46232546 -130741594 + L1MA4 LINE L1 5546 6295 -5 228 296 84 30 chrX 46232546 46232770 -130741370 + L1ME4a LINE L1 3202 3451 -2695 590 280 123 50 chrX 46232898 46233997 -130740143 + L1ME4a LINE L1 4579 5772 -349 2235 145 18 0 chrX 46233997 46234335 -130739805 - MER2 DNA MER2_type 0 344 1 590 280 123 50 chrX 46234335 46234382 -130739758 + L1ME4a LINE L1 5772 5814 -307 650 254 71 88 chrX 46234385 46234482 -130739658 + MLT2C1 LTR ERVL 1 98 -366 2269 116 143 13 chrX 46234482 46234861 -130739279 + MSTA LTR MaLR 1 428 0 650 254 71 88 chrX 46234861 46235258 -130738882 + MLT2C1 LTR ERVL 98 464 0 309 242 69 79 chrX 46235290 46235567 -130738573 + L1ME4a LINE L1 5848 6121 0 291 218 80 99 chrX 46235605 46235917 -130738223 + L1ME4a LINE L1 5816 6121 0 198 143 0 0 chrX 46238231 46238266 -130735874 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 208 303 0 15 chrX 46238515 46238581 -130735559 + GA-rich Low_complexity Low_complexity 2 66 0 442 320 63 11 chrX 46240161 46240336 -130733804 + MIR SINE MIR 20 203 -59 192 279 33 16 chrX 46241406 46241467 -130732673 + L2 LINE L2 3200 3261 -52 619 249 73 94 chrX 46241532 46241671 -130732469 - MIR SINE MIR -21 241 108 4415 137 3 2 chrX 46241671 46242312 -130731828 + L1PA15 LINE L1 5522 6163 -2 619 249 73 94 chrX 46242312 46242417 -130731723 - MIR SINE MIR -154 108 2 639 245 142 26 chrX 46242477 46242710 -130731430 - MIR SINE MIR -2 260 1 300 305 37 32 chrX 46242733 46242904 -130731236 - MIR SINE MIR -62 146 11 279 114 0 0 chrX 46243492 46243536 -130730604 + (TC)n Simple_repeat Simple_repeat 2 45 0 399 324 23 58 chrX 46243649 46243822 -130730318 - L3 LINE CR1 -12 1565 1399 610 345 36 14 chrX 46243846 46244066 -130730074 - MIR SINE MIR -33 229 5 269 383 109 8 chrX 46244045 46244301 -130729839 - L3 LINE CR1 -1062 515 234 * 999 235 28 28 chrX 46244303 46244558 -130729582 + MIR SINE MIR 6 260 -2 26 50 0 0 chrX 46245106 46245146 -130728994 + AT_rich Low_complexity Low_complexity 1 40 0 258 244 0 105 chrX 46245260 46245346 -130728794 + MER96B DNA MER1_type? 337 413 -4 276 127 0 0 chrX 46248046 46248101 -130726039 + (TC)n Simple_repeat Simple_repeat 2 56 0 492 99 0 0 chrX 46248153 46248168 -130725972 + (CA)n Simple_repeat Simple_repeat 1 86 0 492 99 0 0 chrX 46248168 46248239 -130725901 + (CA)n Simple_repeat Simple_repeat 2 72 0 229 291 0 0 chrX 46248698 46248753 -130725387 - L2 LINE L2 -80 3233 3179 426 325 81 29 chrX 46248875 46249121 -130725019 - MIR SINE MIR -3 259 1 1954 152 0 13 chrX 46249885 46250188 -130723952 - AluSx SINE Alu -12 300 2 680 246 18 11 chrX 46250258 46250450 -130723690 + MIR SINE MIR 66 259 -3 216 281 319 15 chrX 46250505 46250640 -130723500 - MIR SINE MIR -84 178 3 334 226 85 104 chrX 46250736 46250900 -130723240 + MIR SINE MIR 47 207 -55 202 292 0 0 chrX 46251109 46251157 -130722983 + L2 LINE L2 3188 3235 -37 1194 241 117 47 chrX 46251168 46251716 -130722424 + L2 LINE L2 2699 3303 -10 371 216 57 23 chrX 46253321 46253409 -130720731 + MIR SINE MIR 32 122 -86 2167 160 34 17 chrX 46253733 46254090 -130720050 + MLT1A1 LTR MaLR 1 363 -2 183 281 90 45 chrX 46254529 46254618 -130719522 - MIR3 SINE MIR -9 199 107 416 347 7 0 chrX 46255592 46255739 -130718401 - L3b LINE CR1 -141 1442 1295 1196 274 52 52 chrX 46255974 46256147 -130717993 + MLT1J LTR MaLR 13 185 -326 4083 110 49 4 chrX 46256147 46256702 -130717438 - LTR19B LTR ERV1 0 580 1 1196 274 52 52 chrX 46256702 46256987 -130717153 + MLT1J LTR MaLR 184 471 -40 727 262 65 22 chrX 46257145 46257374 -130716766 + MIR SINE MIR 3 241 -21 228 264 92 23 chrX 46257968 46258055 -130716085 - L3 LINE CR1 -124 1453 1361 428 310 39 35 chrX 46258092 46258295 -130715845 - L3 LINE CR1 -621 956 753 970 208 99 10 chrX 46258515 46258707 -130715433 - MER3 DNA MER1_type 0 209 1 349 176 148 46 chrX 46260989 46261097 -130713043 + L1MC4 LINE L1 7922 8040 -2 1759 238 43 5 chrX 46261317 46261876 -130712264 + L1ME1 LINE L1 3848 4427 -1719 614 358 24 24 chrX 46261885 46262310 -130711830 + L1MB3 LINE L1 5 429 -5712 261 0 0 0 chrX 46262619 46262648 -130711492 + (CAA)n Simple_repeat Simple_repeat 2 30 0 9002 191 53 42 chrX 46263051 46263886 -130710254 + L1MB3 LINE L1 2749 3573 -2803 378 0 0 0 chrX 46263886 46263928 -130710212 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 9002 191 53 42 chrX 46263928 46263985 -130710155 + L1MB3 LINE L1 3573 3628 -2748 2439 69 7 3 chrX 46263985 46264290 -130709850 + AluY SINE Alu 1 306 -5 9002 191 53 42 chrX 46264290 46266989 -130707151 + L1MB3 LINE L1 3628 6335 -41 1897 225 85 36 chrX 46267034 46267728 -130706412 + L1ME1 LINE L1 4450 5177 -969 * 2690 155 29 5 chrX 46267724 46268316 -130705824 + L1MA4A LINE L1 5595 6277 -26 472 191 36 0 chrX 46268321 46268431 -130705709 + L1ME1 LINE L1 5175 5288 -858 14249 178 31 36 chrX 46268441 46270322 -130703818 + L1MA4 LINE L1 14 1903 -4579 1621 117 0 5 chrX 46270322 46270545 -130703595 + AluSg/x SINE Alu 82 303 -9 14249 178 31 36 chrX 46270545 46275107 -130699033 + L1MA4 LINE L1 1903 6434 -48 2011 119 0 7 chrX 46275107 46275384 -130698756 + AluSg SINE Alu 24 298 -12 14249 178 31 36 chrX 46275384 46275422 -130698718 + L1MA4 LINE L1 6434 6471 -11 3445 202 29 42 chrX 46275430 46275651 -130698489 + L1ME1 LINE L1 5272 5494 -840 2100 136 0 13 chrX 46275651 46275952 -130698188 + AluSx SINE Alu 1 297 -15 3445 202 29 42 chrX 46275952 46276642 -130697498 + L1ME1 LINE L1 5494 6331 -3 254 312 14 14 chrX 46276691 46276832 -130697308 + L1 LINE L1 3764 3904 -2242 256 342 54 7 chrX 46276994 46277143 -130696997 - L1ME LINE L1 -463 5699 5544 2879 181 7 43 chrX 46277144 46277725 -130696415 + MER68 LTR ERV1 3 562 0 21 57 0 0 chrX 46277816 46277851 -130696289 + AT_rich Low_complexity Low_complexity 1 35 0 309 245 95 48 chrX 46277908 46278055 -130696085 - MIR3 SINE MIR -31 177 24 318 255 99 43 chrX 46278900 46279041 -130695099 - MIR SINE MIR -54 208 60 287 111 0 16 chrX 46279647 46279710 -130694430 + (TA)n Simple_repeat Simple_repeat 1 62 0 382 242 93 22 chrX 46281258 46281440 -130692700 + L1ME4a LINE L1 5749 5943 -178 449 349 53 32 chrX 46282019 46282303 -130691837 + L3 LINE CR1 930 1219 -358 312 291 38 0 chrX 46282808 46282887 -130691253 + MIR3 SINE MIR 113 194 -14 328 340 52 0 chrX 46282977 46283074 -130691066 + L2 LINE L2 3168 3269 -3 341 202 44 29 chrX 46283186 46283352 -130690788 + L1P LINE L1 5170 5341 -805 284 313 154 28 chrX 46283597 46283779 -130690361 + L3b LINE CR1 1309 1513 -70 195 220 34 34 chrX 46284047 46284106 -130690034 + MIR3 SINE MIR 126 184 -24 461 326 47 16 chrX 46284374 46284567 -130689573 - MIR3 SINE MIR -3 205 7 196 320 57 33 chrX 46284921 46285043 -130689097 + MIR SINE MIR 67 191 -71 1451 267 39 33 chrX 46285112 46285744 -130688396 - L2 LINE L2 -9 3304 2662 574 236 166 13 chrX 46285796 46285953 -130688187 - MER5A DNA MER1_type 0 189 9 214 220 20 0 chrX 46285968 46286018 -130688122 + L2 LINE L2 3221 3271 -1 844 254 0 19 chrX 46286521 46286734 -130687406 - MER3 DNA MER1_type 0 209 1 405 0 0 0 chrX 46286902 46286947 -130687193 + (TG)n Simple_repeat Simple_repeat 2 46 0 456 350 28 6 chrX 46287238 46287418 -130686722 + MER5A DNA MER1_type 6 189 0 787 252 115 0 chrX 46288534 46288752 -130685388 - MIR SINE MIR -13 249 7 216 0 0 0 chrX 46288906 46288930 -130685210 + (A)n Simple_repeat Simple_repeat 1 24 0 399 227 109 17 chrX 46290274 46290393 -130683747 - L2 LINE L2 0 3313 3184 6054 193 41 26 chrX 46291567 46293981 -130680159 + L1MB3 LINE L1 3253 5806 -378 582 85 143 79 chrX 46293957 46294146 -130679994 + L1MA7 LINE L1 6087 6287 -4 * 675 144 0 0 chrX 46294158 46294269 -130679871 + L1MB7 LINE L1 6052 6162 -22 447 279 41 76 chrX 46294806 46295003 -130679137 - L3 LINE CR1 -3 1574 1385 312 27 0 0 chrX 46295242 46295279 -130678861 + (CA)n Simple_repeat Simple_repeat 1 37 0 333 345 7 7 chrX 46295436 46295575 -130678565 + L3b LINE CR1 1230 1368 -215 250 270 11 56 chrX 46295893 46295982 -130678158 - MIR SINE MIR -70 192 108 682 253 51 63 chrX 46296050 46296287 -130677853 + MIR SINE MIR 1 234 -28 632 207 69 5 chrX 46297359 46297547 -130676593 + L1MB3 LINE L1 5984 6183 0 1876 174 3 7 chrX 46297551 46297861 -130676279 + AluJo SINE Alu 1 309 -3 348 317 10 10 chrX 46297872 46297976 -130676164 - MIR3 SINE MIR -24 184 81 613 294 110 14 chrX 46299245 46299463 -130674677 - MIR SINE MIR -4 258 20 324 317 59 0 chrX 46299483 46299584 -130674556 + L3 LINE CR1 1331 1437 -140 196 221 44 59 chrX 46300364 46300432 -130673708 + L3 LINE CR1 1504 1570 -7 358 328 35 31 chrX 46301008 46301237 -130672903 + L1M4 LINE L1 4 233 -6309 1494 256 27 45 chrX 46301580 46302139 -130672001 + L1M4 LINE L1 627 1175 -5367 443 281 16 25 chrX 46302156 46302277 -130671863 + MIR SINE MIR 34 153 -55 653 249 25 69 chrX 46302319 46302636 -130671504 + MER102b DNA MER1_type 39 341 0 213 154 0 0 chrX 46303425 46303464 -130670676 + (CA)n Simple_repeat Simple_repeat 2 40 0 233 390 48 9 chrX 46303621 46303726 -130670414 - MIR SINE MIR -62 146 38 239 245 0 0 chrX 46303966 46304019 -130670121 + MER5B DNA MER1_type 125 177 -1 196 295 0 16 chrX 46304294 46304355 -130669785 - MIR SINE MIR -119 143 84 286 263 18 35 chrX 46304744 46304858 -130669282 + GA-rich Low_complexity Low_complexity 2 113 0 187 240 140 60 chrX 46304859 46304959 -130669181 - MIR3 SINE MIR -11 197 90 240 204 20 0 chrX 46306679 46306728 -130667412 + (CA)n Simple_repeat Simple_repeat 1 50 0 372 271 48 72 chrX 46306914 46306985 -130667155 - MIR SINE MIR -41 221 150 216 0 0 0 chrX 46306985 46307009 -130667131 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 2140 119 0 3 chrX 46307009 46307302 -130666838 - AluSx SINE Alu -20 292 1 372 271 48 72 chrX 46307302 46307395 -130666745 - MIR SINE MIR -110 152 60 347 328 16 8 chrX 46307563 46307688 -130666452 - L3b LINE CR1 -199 1384 1259 337 255 137 0 chrX 46308136 46308238 -130665902 - MIR3 SINE MIR -6 202 87 989 246 30 8 chrX 46308385 46308621 -130665519 - MIR SINE MIR -20 242 2 270 209 0 75 chrX 46308622 46308689 -130665451 + MIR SINE MIR 111 172 -90 324 237 68 34 chrX 46309283 46309401 -130664739 + MIR SINE MIR 106 227 -35 219 308 92 23 chrX 46310962 46311092 -130663048 - MIR SINE MIR -109 153 15 766 192 7 13 chrX 46311176 46311327 -130662813 - MER5A DNA MER1_type -39 150 1 442 259 0 52 chrX 46312163 46312215 -130661925 + MIR3 SINE MIR 67 120 -88 2393 97 0 3 chrX 46312215 46312523 -130661617 - AluSx SINE Alu -5 307 1 442 259 0 52 chrX 46312523 46312605 -130661535 + MIR3 SINE MIR 120 194 -14 317 250 52 43 chrX 46317178 46317294 -130656846 - MIR3 SINE MIR -47 161 45 248 225 60 41 chrX 46317367 46317513 -130656627 + L1MA9 LINE L1 6137 6291 0 201 326 35 0 chrX 46317915 46318001 -130656139 + MIR SINE MIR 32 120 -88 502 259 239 15 chrX 46318576 46318781 -130655359 - MIR SINE MIR 0 262 12 279 258 43 11 chrX 46318974 46319067 -130655073 + L1MC4a LINE L1 6074 6169 -1639 374 302 7 36 chrX 46320182 46320321 -130653819 + MIR3 SINE MIR 9 143 -65 210 324 49 10 chrX 46321171 46321273 -130652867 - MIR SINE MIR -67 141 36 212 341 55 0 chrX 46322897 46322988 -130651152 + MIR3 SINE MIR 85 180 -28 1847 123 119 0 chrX 46323612 46323889 -130650251 + AluSx SINE Alu 1 310 -2 217 234 28 50 chrX 46323981 46324090 -130650050 + MIR SINE MIR 49 153 -109 196 191 0 21 chrX 46324787 46324834 -130649306 - L2 LINE L2 -2 3311 3266 287 330 20 0 chrX 46325005 46325105 -130649035 + MIR3 SINE MIR 53 154 -54 217 292 0 42 chrX 46325244 46325316 -130648824 + MIR SINE MIR 124 192 -70 220 309 0 0 chrX 46326256 46326327 -130647813 + MIR SINE MIR 76 146 -62 331 303 19 12 chrX 46326658 46326820 -130647320 - MIR3 SINE MIR -43 165 3 220 232 0 152 chrX 46327151 46327263 -130646877 + MIR SINE MIR 36 130 -78 418 298 7 35 chrX 46327782 46327923 -130646217 - MIR3 SINE MIR -1 207 71 472 219 56 56 chrX 46328204 46328382 -130645758 + MER5B DNA MER1_type 1 178 0 469 359 113 31 chrX 46328489 46329071 -130645069 + L3 LINE CR1 180 809 -768 468 249 0 92 chrX 46329280 46329465 -130644675 + MER5B DNA MER1_type 8 175 -3 242 372 69 7 chrX 46329470 46329615 -130644525 + L3 LINE CR1 986 1139 -438 2435 84 3 0 chrX 46329880 46330189 -130643951 - AluSx SINE Alu -2 310 1 239 272 0 54 chrX 46330280 46330372 -130643768 + MIR SINE MIR 106 192 -70 228 309 11 21 chrX 46331912 46332006 -130642134 + GA-rich Low_complexity Low_complexity 2 94 0 183 276 67 30 chrX 46332886 46333020 -130641120 - MIR3 SINE MIR -3 205 67 216 0 0 0 chrX 46333025 46333049 -130641091 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 200 235 15 0 chrX 46336141 46336209 -130637931 + GA-rich Low_complexity Low_complexity 1 69 0 340 285 20 60 chrX 46336676 46336827 -130637313 + MIR3 SINE MIR 12 156 -52 1686 131 43 0 chrX 46336978 46337260 -130636880 + L1MB7 LINE L1 5639 5932 -252 580 259 0 0 chrX 46337260 46337391 -130636749 - MER112 DNA MER1_type -128 132 2 306 358 80 32 chrX 46337489 46337891 -130636249 + L2 LINE L2 1802 2222 -1092 225 333 59 47 chrX 46338001 46338340 -130635800 + L2 LINE L2 2261 2603 -711 370 262 69 7 chrX 46338956 46339101 -130635039 + LTR67 LTR ERVL 404 557 0 610 295 101 64 chrX 46339104 46339628 -130634512 + L2 LINE L2 2727 3272 0 318 313 0 0 chrX 46339737 46339820 -130634320 - MIR SINE MIR -92 116 34 492 225 25 19 chrX 46340026 46340186 -130633954 - L3 LINE CR1 -45 1532 1372 1248 204 8 34 chrX 46340328 46340593 -130633547 - MIR SINE MIR 0 262 5 211 352 93 14 chrX 46341381 46341597 -130632543 - MIR SINE MIR -10 252 20 193 265 0 0 chrX 46341896 46341945 -130632195 - MIR SINE MIR -157 105 57 * 509 245 123 0 chrX 46341942 46342105 -130632035 + L2 LINE L2 3131 3313 0 180 77 0 0 chrX 46342110 46342136 -130632004 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 207 194 0 0 chrX 46342956 46342992 -130631148 + (TAGG)n Simple_repeat Simple_repeat 1 36 0 312 228 38 0 chrX 46343259 46343338 -130630802 + L1MC4a LINE L1 5816 5897 -1911 522 90 0 0 chrX 46343340 46343407 -130630733 + Tigger2 DNA MER2_type 3 69 -2649 * 2766 132 14 20 chrX 46343397 46343843 -130630297 + Tigger2 DNA MER2_type 2273 2715 -3 288 276 103 0 chrX 46343847 46343992 -130630148 + L1MC4a LINE L1 5897 6056 -1752 33 25 0 0 chrX 46344021 46344061 -130630079 + AT_rich Low_complexity Low_complexity 1 40 0 201 162 27 0 chrX 46344090 46344127 -130630013 + CT-rich Low_complexity Low_complexity 5 42 0 535 295 7 0 chrX 46344181 46344330 -130629810 + MIR SINE MIR 5 154 -108 430 225 183 0 chrX 46344377 46344497 -130629643 + MIR SINE MIR 109 250 -12 306 215 86 21 chrX 46344531 46344624 -130629516 + MIR SINE MIR 82 180 -82 6565 81 21 1 chrX 46344689 46345643 -130628497 + L1PA11 LINE L1 5203 6174 0 23 0 0 0 chrX 46346045 46346068 -130628072 + AT_rich Low_complexity Low_complexity 1 23 0 441 259 39 91 chrX 46346684 46346916 -130627224 + L2 LINE L2 3094 3313 0 387 213 11 11 chrX 46348260 46348354 -130625786 + MIR SINE MIR 148 241 -21 278 295 179 6 chrX 46348491 46348647 -130625493 + MIR SINE MIR 30 212 -50 4173 115 10 0 chrX 46348647 46349248 -130624892 - L1PB3 LINE L1 0 6154 5548 1641 174 30 46 chrX 46349250 46349618 -130624522 + THE1B LTR MaLR 3 364 0 8675 172 22 19 chrX 46349618 46351268 -130622872 + THE1B-int LTR MaLR 1 1651 0 1778 154 35 49 chrX 46351268 46351637 -130622503 + THE1B LTR MaLR 1 364 0 1337 108 5 0 chrX 46351638 46351832 -130622308 - L1P5 LINE L1 -603 5551 5357 528 210 25 136 chrX 46351892 46352052 -130622088 - MIR SINE MIR 0 262 136 2078 159 26 52 chrX 46352052 46352233 -130621907 + MLT2D LTR ERVL 3 187 -227 2044 150 0 0 chrX 46352233 46352526 -130621614 - AluSx SINE Alu -19 293 1 2078 159 26 52 chrX 46352526 46352765 -130621375 + MLT2D LTR ERVL 187 412 -2 528 210 25 136 chrX 46352765 46352847 -130621293 - MIR SINE MIR -126 136 47 242 336 200 14 chrX 46352833 46353113 -130621027 + L2 LINE L2 2442 2773 -541 * 931 279 8 0 chrX 46353114 46353351 -130620789 - MIR SINE MIR -21 241 3 479 291 25 25 chrX 46353351 46353552 -130620588 + L2 LINE L2 2761 2961 -353 341 318 6 56 chrX 46354245 46354303 -130619837 - MIR SINE MIR -56 206 147 2077 204 36 46 chrX 46354303 46354772 -130619368 + MLT2B1 LTR ERVL 1 466 -54 462 36 0 0 chrX 46354772 46354828 -130619312 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 2077 204 36 46 chrX 46354828 46354883 -130619257 + MLT2B1 LTR ERVL 466 520 0 341 318 6 56 chrX 46354883 46355003 -130619137 - MIR SINE MIR -115 147 37 6210 107 4 11 chrX 46355438 46356572 -130617568 + L1PA15 LINE L1 5029 6164 -1 1642 164 71 19 chrX 46356990 46357314 -130616826 - MER58B DNA MER1_type 0 341 1 199 245 41 0 chrX 46357318 46357367 -130616773 + MIR3 SINE MIR 144 194 -14 234 231 46 92 chrX 46357608 46357738 -130616402 + L2 LINE L2 2263 2386 -928 2830 96 5 8 chrX 46357785 46358161 -130615979 - THE1C LTR MaLR 0 375 1 9022 127 15 66 chrX 46358161 46359971 -130614169 - THE1C-int LTR MaLR 0 1580 3 2463 133 11 11 chrX 46359973 46360335 -130613805 - THE1B LTR MaLR 0 364 3 1302 271 65 44 chrX 46360546 46361026 -130613114 + MLT1J LTR MaLR 3 492 -19 3227 207 86 25 chrX 46361166 46361342 -130612798 + MER97a DNA MER1_type 3 167 -727 193 29 59 0 chrX 46361342 46361376 -130612764 + (CAA)n Simple_repeat Simple_repeat 2 37 0 3227 207 86 25 chrX 46361376 46362038 -130612102 + MER97a DNA MER1_type 167 892 -2 949 285 189 13 chrX 46362330 46362979 -130611161 + L2 LINE L2 2559 3313 0 197 340 60 33 chrX 46362955 46363105 -130611035 - MIR SINE MIR -58 204 51 * 276 280 280 8 chrX 46363526 46363658 -130610482 - MIR3 SINE MIR -8 200 33 2016 92 67 0 chrX 46364000 46364282 -130609858 - AluSp SINE Alu -12 301 1 487 268 112 17 chrX 46364382 46364561 -130609579 + MIR3 SINE MIR 7 202 -6 306 285 85 15 chrX 46366456 46366586 -130607554 - MIR SINE MIR -40 222 84 307 242 95 49 chrX 46366907 46367066 -130607074 - MIR SINE MIR -64 198 38 540 228 141 7 chrX 46367265 46367414 -130606726 + L3 LINE CR1 1391 1559 -18 495 101 76 0 chrX 46367678 46367757 -130606383 + MLT1B LTR MaLR 1 85 -305 * 1018 133 21 43 chrX 46367740 46367928 -130606212 + MLT1B LTR MaLR 207 390 0 228 259 35 0 chrX 46368008 46368066 -130606074 + L2 LINE L2 3246 3305 -8 472 167 178 63 chrX 46368076 46368250 -130605890 - L2 LINE L2 0 3313 3120 1163 290 137 17 chrX 46368300 46368766 -130605374 - LTR33A LTR ERVL 0 523 2 446 276 164 51 chrX 46368927 46369141 -130604999 + MIR SINE MIR 6 243 -19 594 280 22 22 chrX 46369374 46369556 -130604584 - MIR3 SINE MIR 0 208 27 2262 282 121 45 chrX 46369698 46371239 -130602901 - L2 LINE L2 0 3313 1653 584 247 156 7 chrX 46371274 46371428 -130602712 + MER5A DNA MER1_type 13 189 0 535 260 115 59 chrX 46371433 46371731 -130602409 - L2 LINE L2 -1696 1618 1304 1055 202 0 0 chrX 46371731 46371909 -130602231 - MER5B DNA MER1_type 0 178 1 988 317 104 50 chrX 46372042 46372689 -130601451 - L2 LINE L2 -2062 1252 571 * 1105 322 53 19 chrX 46372683 46373158 -130600982 - L2 LINE L2 -11 3302 2812 536 253 167 0 chrX 46373429 46373579 -130600561 + MER5A DNA MER1_type 9 183 -6 412 262 29 0 chrX 46374510 46374613 -130599527 + L3 LINE CR1 1432 1537 -40 216 278 206 10 chrX 46374669 46374766 -130599374 + MIR3 SINE MIR 71 186 -22 573 250 9 97 chrX 46374992 46375208 -130598932 + Charlie8 DNA MER1_type 38 234 -2183 616 168 0 0 chrX 46375455 46375550 -130598590 - MER5A DNA MER1_type -83 106 12 230 240 6 34 chrX 46375939 46376118 -130598022 + GA-rich Low_complexity Low_complexity 3 176 0 2089 126 78 28 chrX 46376159 46376516 -130597624 - THE1C LTR MaLR 0 375 1 181 273 125 23 chrX 46376543 46376631 -130597509 + MIR3 SINE MIR 109 205 -3 386 361 42 39 chrX 46376856 46377188 -130596952 + L2 LINE L2 2507 2839 -475 200 276 17 0 chrX 46377444 46377502 -130596638 + L2 LINE L2 3210 3268 -4 667 227 33 0 chrX 46377913 46378063 -130596077 + MIR SINE MIR 87 241 -21 31587 112 12 54 chrX 46378211 46384628 -130589512 + L1PA7 LINE L1 12 6151 -3 3400 250 52 32 chrX 46385077 46386410 -130587730 - L2 LINE L2 0 3313 1955 798 203 8 93 chrX 46386805 46386987 -130587153 - MIR SINE MIR -30 232 73 414 0 0 0 chrX 46386987 46387033 -130587107 + (TAA)n Simple_repeat Simple_repeat 3 48 0 798 203 8 93 chrX 46387033 46387086 -130587054 - MIR SINE MIR -189 73 17 604 211 200 17 chrX 46387103 46387278 -130586862 + MER58C DNA MER1_type 9 215 0 2758 127 2 2 chrX 46387581 46387983 -130586157 - L1PBa LINE L1 -5405 1702 1301 * 5218 167 9 4 chrX 46387978 46389072 -130585068 - L1P4 LINE L1 -670 5491 4397 3728 158 29 27 chrX 46389071 46389547 -130584593 - L1 LINE L1 -812 5334 4855 * 2177 139 21 0 chrX 46389547 46389878 -130584262 + L1PB1 LINE L1 5814 6151 0 3728 158 29 27 chrX 46389878 46390130 -130584010 - L1 LINE L1 -1291 4855 4605 1646 222 43 53 chrX 46390137 46390623 -130583517 - L1PBa LINE L1 -6549 481 1 363 338 0 8 chrX 46391005 46391138 -130583002 + MIR SINE MIR 23 154 -108 2735 108 8 11 chrX 46391146 46391518 -130582622 + THE1C LTR MaLR 5 375 0 5862 140 74 11 chrX 46391518 46391944 -130582196 + THE1C-int LTR MaLR 1 399 -1181 2073 138 0 31 chrX 46391944 46392264 -130581876 + AluSg SINE Alu 1 310 0 5862 140 74 11 chrX 46392264 46392796 -130581344 + THE1C-int LTR MaLR 399 1019 -561 2721 88 5 11 chrX 46392792 46393168 -130580972 + THE1C-int LTR MaLR 1207 1580 0 * 770 184 126 11 chrX 46393269 46393459 -130580681 - L1MB4 LINE L1 -110 6070 5859 43152 48 11 1 chrX 46393463 46399549 -130574591 - L1PA4 LINE L1 -2 6153 1 3307 186 14 12 chrX 46399522 46399940 -130574200 - L1MB4 LINE L1 -275 5905 5489 * 1732 135 69 14 chrX 46399940 46399955 -130574185 - AluSx SINE Alu -7 305 292 189 0 0 0 chrX 46399955 46399976 -130574164 + (TG)n Simple_repeat Simple_repeat 2 22 0 1732 135 69 14 chrX 46399976 46400249 -130573891 - AluSx SINE Alu -20 292 1 3307 186 14 12 chrX 46400249 46400712 -130573428 - L1MB4 LINE L1 -691 5489 5019 216 0 0 0 chrX 46400732 46400756 -130573384 + (A)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chrX 46400939 46400972 -130573168 + AT_rich Low_complexity Low_complexity 1 33 0 303 372 6 17 chrX 46401016 46401188 -130572952 - MIR SINE MIR -65 197 28 3741 170 36 1 chrX 46401352 46402024 -130572116 - L1MA8 LINE L1 -274 6017 5323 4988 102 7 20 chrX 46402024 46402733 -130571407 - L1PA13 LINE L1 -2 6161 5462 2314 136 26 0 chrX 46402733 46403071 -130571069 - L1PB1 LINE L1 -5 6862 6507 940 84 28 17 chrX 46403071 46403249 -130570891 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 0 0 0 chrX 46403259 46403285 -130570855 + AT_rich Low_complexity Low_complexity 1 26 0 713 67 79 0 chrX 46403285 46403449 -130570691 + (TA)n Simple_repeat Simple_repeat 2 178 0 679 73 80 0 chrX 46403463 46403764 -130570376 + (TA)n Simple_repeat Simple_repeat 1 325 0 8525 170 19 21 chrX 46403768 46404163 -130569977 - L1PB1 LINE L1 -360 6507 6113 2702 83 11 28 chrX 46404163 46404524 -130569616 - THE1A LTR MaLR 0 355 1 8525 170 19 21 chrX 46404524 46407145 -130566995 - L1PB1 LINE L1 -754 6113 1439 8929 66 4 132 chrX 46407145 46408608 -130565532 - SVA Other Other 0 1386 111 806 208 0 0 chrX 46408721 46408870 -130565270 + L1MC1 LINE L1 4060 4208 -1938 681 211 28 17 chrX 46408884 46409064 -130565076 + L1MC1 LINE L1 4145 4326 -1820 8031 34 2 0 chrX 46409097 46410274 -130563866 - L1PA3 LINE L1 -3 6152 4971 4013 34 0 0 chrX 46410274 46410743 -130563397 + L1P LINE L1 4199 4667 -1479 * 5682 204 34 15 chrX 46410738 46411196 -130562944 + L1MC1 LINE L1 4316 4764 -1569 195 42 0 0 chrX 46411196 46411220 -130562920 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5682 204 34 15 chrX 46411220 46411518 -130562622 + L1MC1 LINE L1 4764 5055 -1278 2363 64 7 14 chrX 46411518 46411815 -130562325 - AluY SINE Alu -16 295 1 5682 204 34 15 chrX 46411815 46412093 -130562047 + L1MC1 LINE L1 5055 5326 -1007 2236 160 0 24 chrX 46412093 46412467 -130561673 + MER47A DNA MER2_type 2 366 0 5682 204 34 15 chrX 46412467 46413409 -130560731 + L1MC1 LINE L1 5326 6332 -1 8437 201 17 66 chrX 46413419 46415225 -130558915 + L1 LINE L1 2 1718 -5131 1552 182 50 19 chrX 46415206 46415568 -130558572 + L1 LINE L1 4463 4835 -2013 * 11412 36 0 1 chrX 46415563 46416911 -130557229 - L1PA3 LINE L1 -1076 5070 3724 8033 31 2 1 chrX 46416913 46417990 -130556150 + L1PA3 LINE L1 5078 6155 0 5109 199 21 14 chrX 46417994 46418424 -130555716 + L1 LINE L1 4816 5242 -1606 2233 128 0 3 chrX 46418424 46418730 -130555410 + AluSc SINE Alu 1 305 -4 5109 199 21 14 chrX 46418730 46419457 -130554683 + L1 LINE L1 5242 5981 -867 2611 275 36 19 chrX 46419470 46420249 -130553891 + L1PA15 LINE L1 1 792 -5995 2862 225 31 24 chrX 46420508 46423846 -130550294 + L1PA15 LINE L1 1235 4714 -2102 1490 204 3 36 chrX 46423846 46424150 -130549990 + AluJb SINE Alu 2 295 -7 2862 225 31 24 chrX 46424150 46426269 -130547871 + L1PA15 LINE L1 4714 6816 0 3604 111 25 15 chrX 46426269 46426857 -130547283 + L1MA4A LINE L1 5274 5867 -436 657 172 16 31 chrX 46426858 46426986 -130547154 + L1P3 LINE L1 28 153 -6696 * 14061 220 35 20 chrX 46426980 46430385 -130543755 + L1MA4 LINE L1 381 3733 -3629 2110 144 0 0 chrX 46430385 46430683 -130543457 + AluSx SINE Alu 1 298 -14 14061 220 35 20 chrX 46430683 46433193 -130540947 + L1MA4 LINE L1 3733 7112 -250 2031 149 0 0 chrX 46433193 46433494 -130540646 + AluSg SINE Alu 1 301 -9 554 117 0 0 chrX 46433505 46433582 -130540558 + L1P3 LINE L1 393 469 -6380 221 56 0 28 chrX 46433582 46433618 -130540522 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 5015 43 0 0 chrX 46433618 46434205 -130539935 - L1PA4 LINE L1 -24 6131 5545 11086 129 17 12 chrX 46434205 46436288 -130537852 + L1P3 LINE L1 453 2545 -4304 * 28747 50 1 4 chrX 46436287 46439835 -130534305 - L1P LINE L1 -2600 3546 9 17794 107 83 13 chrX 46439838 46442677 -130531463 + L1P3 LINE L1 2533 5568 -1281 1431 82 68 5 chrX 46442777 46442984 -130531156 - L1P LINE L1 -5926 220 1 * 3307 186 14 12 chrX 46442957 46443375 -130530765 - L1MB4 LINE L1 -275 5905 5489 1732 135 69 14 chrX 46443375 46443390 -130530750 - AluSx SINE Alu -7 305 292 189 0 0 0 chrX 46443390 46443411 -130530729 + (TG)n Simple_repeat Simple_repeat 2 22 0 1732 135 69 14 chrX 46443411 46443684 -130530456 - AluSx SINE Alu -20 292 1 3307 186 14 12 chrX 46443684 46444147 -130529993 - L1MB4 LINE L1 -691 5489 5019 288 102 0 0 chrX 46444167 46444216 -130529924 + (A)n Simple_repeat Simple_repeat 1 49 0 640 270 39 39 chrX 46444399 46444658 -130529482 - MIR SINE MIR -3 259 1 247 327 26 35 chrX 46445284 46445397 -130528743 + L2 LINE L2 3116 3227 -45 783 297 70 4 chrX 46445529 46445758 -130528382 + MIR SINE MIR 19 262 0 338 276 150 16 chrX 46446128 46446255 -130527885 + MIR3 SINE MIR 48 191 -17 4466 224 49 41 chrX 46448038 46449613 -130524527 + L1MDb LINE L1 16 1590 -4816 947 247 39 100 chrX 46449616 46450186 -130523954 + L1 LINE L1 3468 4002 -2144 24475 46 3 77 chrX 46450287 46453804 -130520336 - L1P LINE L1 -1602 4544 1289 256 150 188 38 chrX 46453793 46453873 -130520267 - L1 LINE L1 -1697 4449 4358 * 184 196 36 54 chrX 46453910 46453966 -130520174 + MIR3 SINE MIR 123 177 -31 1035 227 50 5 chrX 46454362 46454582 -130519558 + MIR SINE MIR 3 232 -30 273 303 20 16 chrX 46454653 46454782 -130519358 + MIR SINE MIR 2 129 -79 279 319 44 37 chrX 46455291 46455426 -130518714 + L2 LINE L2 3111 3246 -26 240 344 135 6 chrX 46455464 46455627 -130518513 + MIR3 SINE MIR 2 185 -23 257 278 14 14 chrX 46455913 46455985 -130518155 + CT-rich Low_complexity Low_complexity 5 76 0 368 277 53 73 chrX 46458011 46458217 -130515923 + MIR3 SINE MIR 4 205 -3 459 286 78 41 chrX 46458260 46458481 -130515659 - MIR SINE MIR -8 254 32 1964 109 70 0 chrX 46458696 46458981 -130515159 - AluY SINE Alu -6 305 1 368 266 21 0 chrX 46459473 46459567 -130514573 + MIR SINE MIR 128 223 -39 183 310 0 17 chrX 46459692 46459750 -130514390 + MIR3 SINE MIR 4 60 -148 222 62 0 0 chrX 46459750 46459782 -130514358 + (T)n Simple_repeat Simple_repeat 1 32 0 228 296 174 0 chrX 46459782 46459897 -130514243 + MIR3 SINE MIR 67 201 -7 211 261 72 14 chrX 46460153 46460222 -130513918 - MIR3 SINE MIR -54 154 82 440 274 0 8 chrX 46460775 46460892 -130513248 - MIR SINE MIR 0 262 147 262 279 12 0 chrX 46460904 46460990 -130513150 + MIR SINE MIR 173 259 -3 215 214 0 0 chrX 46461198 46461240 -130512900 - MIR SINE MIR -105 157 116 263 341 48 24 chrX 46461255 46461381 -130512759 + MIR SINE MIR 20 148 -114 2248 137 62 11 chrX 46461560 46461917 -130512223 - THE1C LTR MaLR 0 375 1 10278 121 8 54 chrX 46461917 46463573 -130510567 - THE1C-int LTR MaLR 0 1580 1 2467 119 13 46 chrX 46463573 46463961 -130510179 - THE1C LTR MaLR 0 375 1 185 300 191 36 chrX 46464002 46464112 -130510028 - MIR SINE MIR -113 149 23 306 241 102 102 chrX 46464452 46464717 -130509423 - LTR38 LTR ERV1 0 556 292 249 239 15 30 chrX 46464848 46464915 -130509225 - LTR38 LTR ERV1 -362 194 129 389 189 123 28 chrX 46465008 46465114 -130509026 - LTR38B LTR ERV1 -494 116 1 333 198 21 73 chrX 46465426 46465522 -130508618 + MLT1C LTR MaLR 8 98 -369 1590 141 44 28 chrX 46465523 46465863 -130508277 - MER4A LTR ERV1 0 664 261 602 152 0 10 chrX 46465863 46465962 -130508178 - MER4A LTR ERV1 -566 98 1 7116 109 39 47 chrX 46465975 46466944 -130507196 - MER4A-int LTR ERV1 -3 6595 5637 1887 154 10 3 chrX 46466944 46467243 -130506897 - AluSq SINE Alu -12 301 1 7116 109 39 47 chrX 46467243 46467497 -130506643 - MER4A-int LTR ERV1 -961 5637 5382 257 271 47 47 chrX 46467548 46467655 -130506485 + MIR3 SINE MIR 99 205 -3 452 302 47 27 chrX 46469606 46469755 -130504385 - MIR3 SINE MIR -19 189 38 302 315 144 9 chrX 46470713 46470824 -130503316 + MIR SINE MIR 20 145 -117 185 189 27 0 chrX 46470866 46470903 -130503237 + L2 LINE L2 3214 3251 -21 575 268 32 22 chrX 46471109 46471302 -130502838 + MIR SINE MIR 20 212 -50 22 80 0 0 chrX 46472283 46472333 -130501807 + AT_rich Low_complexity Low_complexity 1 50 0 1796 133 65 22 chrX 46472816 46472948 -130501192 - MLT1C LTR MaLR -129 338 213 321 100 0 0 chrX 46472948 46472998 -130501142 + (TG)n Simple_repeat Simple_repeat 2 51 0 1796 133 65 22 chrX 46472998 46473189 -130500951 - MLT1C LTR MaLR -254 213 1 438 309 75 67 chrX 46473197 46473731 -130500409 + L2 LINE L2 2224 2761 -553 214 277 0 0 chrX 46474006 46474053 -130500087 + L2 LINE L2 3261 3307 -6 251 246 69 13 chrX 46474607 46474712 -130499428 - MIR SINE MIR -72 136 48 557 274 8 0 chrX 46475044 46475168 -130498972 + MIR SINE MIR 19 143 -119 492 269 43 7 chrX 46475169 46475310 -130498830 - L2 LINE L2 0 3313 3168 208 341 24 0 chrX 46475314 46475396 -130498744 + MIR SINE MIR 158 241 -21 779 282 13 18 chrX 46476096 46476323 -130497817 + MIR SINE MIR 8 233 -29 181 248 54 46 chrX 46476342 46476445 -130497695 + MIR SINE MIR 88 190 -72 324 48 0 0 chrX 46476700 46476742 -130497398 + (CA)n Simple_repeat Simple_repeat 2 43 0 831 269 47 28 chrX 46477234 46477487 -130496653 - MIR SINE MIR 0 262 5 623 259 27 32 chrX 46477792 46477977 -130496163 - MIR SINE MIR -14 248 65 1849 175 147 0 chrX 46477977 46478331 -130495809 - MSTB LTR MaLR 0 426 21 221 136 0 91 chrX 46478333 46478377 -130495763 - MIR SINE MIR -201 61 22 477 242 36 36 chrX 46478448 46478613 -130495527 - MIR SINE MIR -3 259 95 359 195 0 65 chrX 46478653 46478730 -130495410 + L1MC3 LINE L1 7070 7141 -644 5703 15 2 5 chrX 46478738 46479355 -130494785 - L1PA4 LINE L1 -3 6152 5538 208 273 0 0 chrX 46479382 46479426 -130494714 - MIR SINE MIR -169 93 50 191 256 154 13 chrX 46479463 46479541 -130494599 + L2 LINE L2 2624 2712 -602 1187 269 115 17 chrX 46479602 46480123 -130494017 - L2 LINE L2 -420 2894 2323 204 224 163 0 chrX 46480495 46480544 -130493596 - MIR SINE MIR 0 262 206 546 331 12 6 chrX 46480581 46480750 -130493390 - MIR SINE MIR -46 216 47 658 210 11 85 chrX 46480792 46480968 -130493172 + MER5B DNA MER1_type 11 173 -5 334 313 0 0 chrX 46481503 46481583 -130492557 + MIR SINE MIR 66 145 -63 589 189 0 143 chrX 46481669 46481691 -130492449 - MIR SINE MIR -12 250 226 2113 169 40 80 chrX 46481691 46482217 -130491923 - MLT1D LTR MaLR 0 505 1 589 189 0 143 chrX 46482217 46482369 -130491771 - MIR SINE MIR -36 226 101 228 219 50 59 chrX 46482431 46482550 -130491590 - MLT1L LTR MaLR -8 607 490 314 247 0 26 chrX 46482567 46482644 -130491496 - MLT1J LTR MaLR -193 318 244 632 247 137 26 chrX 46482909 46482927 -130491213 - Charlie8 DNA MER1_type -2130 287 272 2357 114 0 0 chrX 46482927 46483235 -130490905 + AluSx SINE Alu 1 308 -4 632 247 137 26 chrX 46483235 46483443 -130490697 - Charlie8 DNA MER1_type -2145 272 36 243 234 149 11 chrX 46483500 46483594 -130490546 + MIR SINE MIR 40 146 -62 278 50 25 0 chrX 46484809 46484849 -130489291 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 217 0 61 0 chrX 46485218 46485251 -130488889 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2174 122 3 34 chrX 46485532 46485852 -130488288 + AluSx SINE Alu 1 310 -2 395 350 49 6 chrX 46486123 46486286 -130487854 - MIR SINE MIR -39 223 54 250 333 117 0 chrX 46486448 46486568 -130487572 - L2 LINE L2 -227 3045 2912 2421 141 8 24 chrX 46486654 46487024 -130487116 - THE1B LTR MaLR 0 364 1 10607 107 12 6 chrX 46487024 46488497 -130485643 - THE1B-int LTR MaLR 0 1580 99 1096 117 0 0 chrX 46488498 46488652 -130485488 - THE1B-int LTR MaLR -1426 154 1 2149 137 17 17 chrX 46488652 46489002 -130485138 - THE1B LTR MaLR 0 364 15 271 281 72 16 chrX 46489010 46489150 -130484990 - MIR SINE MIR -64 144 32 246 323 30 38 chrX 46489777 46489910 -130484230 - MIR SINE MIR -43 219 88 333 181 83 0 chrX 46490030 46490102 -130484038 - L1ME1 LINE L1 -5 6161 6084 454 271 52 5 chrX 46490246 46490394 -130483746 - L1ME1 LINE L1 -87 6077 5929 205 211 0 0 chrX 46490503 46490541 -130483599 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 191 306 0 16 chrX 46491486 46491548 -130482592 + MIR3 SINE MIR 10 70 -138 192 293 17 0 chrX 46491652 46491710 -130482430 + MIR3 SINE MIR 123 181 -27 1646 122 0 4 chrX 46491886 46492124 -130482016 + MER96B DNA MER1_type? 1 237 -180 808 272 5 20 chrX 46492253 46492455 -130481685 + MIR SINE MIR 8 206 -56 1202 172 36 8 chrX 46492800 46493050 -130481090 - L1MA4 LINE L1 -9 6291 6035 * 7302 74 12 0 chrX 46493042 46494722 -130479418 - L1PA7 LINE L1 -6 6148 4455 20006 28 0 0 chrX 46494826 46497830 -130476310 + L1PA3 LINE L1 3150 6152 -3 23 0 0 0 chrX 46497830 46497853 -130476287 + AT_rich Low_complexity Low_complexity 1 23 0 4920 158 27 20 chrX 46497853 46499433 -130474707 + L1MA8 LINE L1 4441 6037 -254 360 205 0 48 chrX 46499433 46499516 -130474624 - AluJ/FRAM SINE Alu 0 302 224 1033 179 6 6 chrX 46499521 46499694 -130474446 + MER58B DNA MER1_type 169 341 0 423 276 99 70 chrX 46500215 46500458 -130473682 - MIR SINE MIR 0 262 13 782 240 22 6 chrX 46500548 46500731 -130473409 - MIR SINE MIR -7 255 70 355 277 126 0 chrX 46501259 46501378 -130472762 - MIR3 SINE MIR -9 199 66 362 314 44 22 chrX 46502774 46502911 -130471229 - MIR3 SINE MIR -63 145 6 1659 249 40 15 chrX 46502988 46503531 -130470609 - L1M4 LINE L1 -2682 3464 2908 611 248 119 47 chrX 46503532 46503810 -130470330 - L2 LINE L2 -42 3271 2974 444 221 15 23 chrX 46503864 46503995 -130470145 - LTR55 LTR ERV -7 541 412 2473 173 25 2 chrX 46504005 46504555 -130469585 + L1MA9 LINE L1 5632 6290 -22 4054 224 35 44 chrX 46504600 46505001 -130469139 - L1ME2 LINE L1 -49 6926 6523 304 111 0 0 chrX 46505001 46505046 -130469094 - U5 snRNA snRNA -71 45 1 4054 224 35 44 chrX 46505046 46506433 -130467707 - L1ME2 LINE L1 -452 6523 5118 489 143 0 0 chrX 46506434 46506518 -130467622 + MLT2B3 LTR ERVL 1 84 -470 3510 212 105 10 chrX 46506618 46507544 -130466596 + L1PB1 LINE L1 136 1149 -5714 * 9221 191 5 18 chrX 46507541 46510011 -130464129 + L1PB1 LINE L1 3856 6291 -576 339 25 0 0 chrX 46510120 46510160 -130463980 + (TA)n Simple_repeat Simple_repeat 2 41 0 2147 138 11 3 chrX 46510161 46510515 -130463625 + L1PB1 LINE L1 6510 6866 -1 287 229 19 0 chrX 46510552 46510657 -130463483 - L1ME2 LINE L1 -3182 3775 3669 2032 306 62 22 chrX 46510692 46511611 -130462529 - L1ME2 LINE L1 -5799 1060 105 436 242 39 31 chrX 46511868 46511986 -130462154 - L2 LINE L2 0 3313 3192 466 150 0 0 chrX 46511986 46512066 -130462074 + MER116 DNA Mariner 1 80 0 455 342 70 16 chrX 46512081 46512268 -130461872 + MIR SINE MIR 60 256 -6 643 128 46 0 chrX 46512656 46512765 -130461375 + MSTC LTR MaLR 1 114 -314 616 105 181 0 chrX 46512763 46512868 -130461272 + MSTC LTR MaLR 305 428 0 * 2029 65 34 0 chrX 46513064 46513327 -130460813 + AluY SINE Alu 39 310 -1 180 77 0 0 chrX 46513346 46513372 -130460768 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 906 197 6 17 chrX 46513426 46513604 -130460536 - FRAM SINE Alu 0 176 1 200 191 24 0 chrX 46513606 46513648 -130460492 + L3b LINE CR1 1373 1415 -168 585 269 99 30 chrX 46513662 46513863 -130460277 + MER58C DNA MER1_type 1 215 0 410 350 74 19 chrX 46514479 46514736 -130459404 - L3 LINE CR1 -33 1544 1274 251 372 137 4 chrX 46515203 46515429 -130458711 - L3 LINE CR1 -10 1567 1312 2103 88 0 0 chrX 46515566 46515863 -130458277 + AluY SINE Alu 40 336 0 454 332 88 18 chrX 46515863 46516089 -130458051 + L3b LINE CR1 1338 1579 -4 270 273 34 23 chrX 46516665 46516753 -130457387 - MIR SINE MIR -74 188 100 * 360 269 32 70 chrX 46516738 46516894 -130457246 + L3 LINE CR1 1392 1541 -36 747 224 145 0 chrX 46517114 46517342 -130456798 - MIR SINE MIR 0 262 2 503 310 105 13 chrX 46517997 46518236 -130455904 - MIR SINE MIR 0 262 2 200 309 128 11 chrX 46518377 46518471 -130455669 - MIR SINE MIR -55 153 49 197 237 0 0 chrX 46519180 46519218 -130454922 - MIR3 SINE MIR -31 177 140 317 259 193 104 chrX 46519305 46519652 -130454488 - L3 LINE CR1 -116 1461 1084 331 248 0 64 chrX 46519883 46519992 -130454148 + MER5A DNA MER1_type 82 183 -6 373 213 0 0 chrX 46521388 46521468 -130452672 + L1ME3A LINE L1 5764 5843 -327 526 255 174 0 chrX 46521474 46521623 -130452517 - MER5A DNA MER1_type -6 183 9 212 278 0 0 chrX 46522224 46522278 -130451862 + MIR SINE MIR 51 104 -158 * 767 304 121 36 chrX 46522271 46522686 -130451454 - L2 LINE L2 -27 3286 2837 185 197 212 15 chrX 46522694 46522760 -130451380 + MIR SINE MIR 94 172 -90 1681 190 150 12 chrX 46522854 46523454 -130450686 + L1MCa LINE L1 1945 2682 -3925 1108 92 12 0 chrX 46523451 46523624 -130450516 - L1P LINE L1 -1416 4730 4556 * 3761 173 32 5 chrX 46523729 46524510 -130449630 + L1PB4 LINE L1 5353 6154 -2 3144 243 25 53 chrX 46524516 46525317 -130448823 + L1MCa LINE L1 3045 3794 -2632 461 238 109 0 chrX 46525317 46525418 -130448722 - FLAM_A SINE Alu -18 115 4 3144 243 25 53 chrX 46525418 46525970 -130448170 + L1MCa LINE L1 3794 4360 -2066 244 222 14 28 chrX 46525959 46526031 -130448109 + L1MA1 LINE L1 8 78 -7487 * 5887 207 71 2 chrX 46526031 46527271 -130446869 + L1MA1 LINE L1 445 1769 -5796 1830 161 127 16 chrX 46527271 46527656 -130446484 - MSTA LTR MaLR 0 428 1 5361 150 5 23 chrX 46527656 46528284 -130445856 - MSTA-int LTR MaLR 0 1580 973 2050 137 39 39 chrX 46528284 46528648 -130445492 + THE1B LTR MaLR 1 364 0 5361 150 5 23 chrX 46528648 46528984 -130445156 - MSTA-int LTR MaLR -607 973 633 393 223 36 27 chrX 46528997 46529109 -130445031 + MST-int LTR MaLR 373 485 -1166 9796 174 23 11 chrX 46529127 46530798 -130443342 + L1MA1 LINE L1 1778 3427 -4138 2534 68 0 7 chrX 46530798 46531106 -130443034 + AluY SINE Alu 5 310 -1 9796 174 23 11 chrX 46531106 46531647 -130442493 + L1MA1 LINE L1 3427 3960 -3605 2265 113 0 7 chrX 46531647 46531949 -130442191 + AluSx SINE Alu 1 300 -12 9796 174 23 11 chrX 46531949 46532795 -130441345 + L1MA1 LINE L1 3960 4794 -2771 2302 166 39 10 chrX 46532795 46533210 -130440930 - MSTA LTR MaLR -1 427 1 9796 174 23 11 chrX 46533210 46534257 -130439883 + L1MA1 LINE L1 4794 5939 -1626 6474 227 35 15 chrX 46534256 46535752 -130438388 + L1PA13 LINE L1 158 1684 -5103 * 3100 92 2 0 chrX 46535750 46536208 -130437932 - L1P LINE L1 -3159 2987 2529 * 14884 119 7 23 chrX 46536204 46538557 -130435583 + L1MB7 LINE L1 2978 5285 -899 4744 203 4 39 chrX 46538557 46538613 -130435527 + L1MA1 LINE L1 6832 6888 -833 1952 143 0 26 chrX 46538613 46538921 -130435219 - AluSx SINE Alu -12 300 1 4744 203 4 39 chrX 46538921 46539785 -130434355 + L1MA1 LINE L1 6888 7721 0 14884 119 7 23 chrX 46539785 46540667 -130433473 + L1MB7 LINE L1 5285 6179 -5 279 233 43 26 chrX 46540677 46540793 -130433347 + L1MC4 LINE L1 7782 7899 -143 304 276 100 29 chrX 46541109 46541279 -130432861 - L1MC4a LINE L1 -1755 6053 5872 1702 191 67 13 chrX 46541446 46541822 -130432318 + MSTD LTR MaLR 1 396 0 1950 138 7 10 chrX 46542804 46543094 -130431046 + AluSx SINE Alu 1 289 -23 1723 110 28 24 chrX 46543521 46543812 -130430328 - THE1C LTR MaLR 0 375 84 543 100 12 0 chrX 46544101 46544181 -130429959 - THE1C LTR MaLR -294 81 1 373 327 40 0 chrX 46544230 46544331 -130429809 - MER91C DNA MER1_type -34 106 2 220 204 0 19 chrX 46544432 46544486 -130429654 + (TTATG)n Simple_repeat Simple_repeat 1 53 0 958 275 80 64 chrX 46544732 46545160 -130428980 + THE1B LTR MaLR 1 428 0 11289 110 9 0 chrX 46545160 46546726 -130427414 + THE1B-int LTR MaLR 1 1580 0 2165 138 33 25 chrX 46546726 46547087 -130427053 + THE1B LTR MaLR 1 364 0 1965 146 10 3 chrX 46547359 46547660 -130426480 - AluSx SINE Alu -9 303 1 270 0 0 0 chrX 46547687 46547717 -130426423 + (CA)n Simple_repeat Simple_repeat 1 30 0 16813 39 2 2 chrX 46548074 46550488 -130423652 - L1P1 LINE L1 -516 5639 3225 7505 27 9 0 chrX 46550488 46551886 -130422254 + L1PA3 LINE L1 4747 6152 -3 1081 262 45 16 chrX 46551907 46552289 -130421851 + L1M4 LINE L1 2351 2743 -3403 570 260 5 1 chrX 46552298 46552484 -130421656 + L1MA3 LINE L1 4235 4420 -1726 235 188 31 8 chrX 46552485 46552613 -130421527 + (TA)n Simple_repeat Simple_repeat 1 131 0 3042 195 87 21 chrX 46552614 46553497 -130420643 + L1MA3 LINE L1 4428 5368 -778 1294 131 9 5 chrX 46553475 46553697 -130420443 + L1MA3 LINE L1 5713 5935 -370 * 270 230 0 40 chrX 46553864 46553894 -130420246 + Tigger5 DNA MER2_type 1 31 -2292 22 0 0 0 chrX 46553894 46553916 -130420224 + AT_rich Low_complexity Low_complexity 1 22 0 270 230 0 40 chrX 46553916 46553938 -130420202 + Tigger5 DNA MER2_type 31 71 -2252 21 57 0 0 chrX 46553939 46553974 -130420166 + AT_rich Low_complexity Low_complexity 1 35 0 330 197 0 0 chrX 46553979 46554040 -130420100 + Tigger5 DNA MER2_type 2263 2323 0 356 276 0 0 chrX 46554123 46554199 -130419941 + MIR3 SINE MIR 81 156 -52 3195 87 19 14 chrX 46554677 46555162 -130418978 + LTR15 LTR ERV1 1 487 -6 366 312 85 23 chrX 46555187 46555375 -130418765 + MIR3 SINE MIR 5 198 -64 201 74 0 0 chrX 46555749 46555776 -130418364 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1672 161 36 13 chrX 46555778 46556083 -130418057 - AluJb SINE Alu 0 312 1 211 250 0 0 chrX 46556083 46556119 -130418021 - MIR SINE MIR -56 152 117 3282 133 68 0 chrX 46556639 46557156 -130416984 + MER41C LTR ERV1 1 552 -2 959 242 60 75 chrX 46557543 46557692 -130416448 - L2 LINE L2 -129 3184 3034 2767 117 70 32 chrX 46557692 46558163 -130415977 - LTR22B LTR ERVK -3 489 1 959 242 60 75 chrX 46558163 46558506 -130415634 - L2 LINE L2 -279 3034 2705 254 333 11 11 chrX 46558484 46558571 -130415569 - MIR SINE MIR -148 114 28 * 2215 102 3 13 chrX 46559361 46559664 -130414476 + AluY SINE Alu 1 300 -11 24 0 0 0 chrX 46559748 46559772 -130414368 + AT_rich Low_complexity Low_complexity 1 24 0 1683 129 4 4 chrX 46559784 46560055 -130414085 + L1PA16 LINE L1 5896 6166 0 2175 156 8 19 chrX 46560331 46560710 -130413430 - THE1C LTR MaLR 0 375 1 9806 121 13 30 chrX 46560710 46562301 -130411839 - THE1C-int LTR MaLR 0 1580 17 2324 127 11 19 chrX 46562328 46562706 -130411434 - THE1C LTR MaLR 0 375 1 631 240 18 72 chrX 46563430 46563614 -130410526 - MER63A DNA MER1_type -1478 210 38 2099 129 0 7 chrX 46563614 46563908 -130410232 - AluSg1 SINE Alu -17 292 1 631 240 18 72 chrX 46563908 46563944 -130410196 - MER63A DNA MER1_type -1650 38 2 324 288 45 30 chrX 46564019 46564151 -130409989 + L2 LINE L2 3177 3310 -3 4878 144 11 16 chrX 46565281 46566170 -130407970 - Tigger3b DNA MER2_type -1 1230 346 214 316 26 0 chrX 46566258 46566334 -130407806 - L2 LINE L2 -50 3263 3186 459 269 177 11 chrX 46566970 46567156 -130406984 + Charlie8 DNA MER1_type 48 264 -2153 6195 123 34 22 chrX 46567329 46568453 -130405687 + L1PA10 LINE L1 4093 5229 -917 234 91 0 0 chrX 46568453 46568486 -130405654 + (T)n Simple_repeat Simple_repeat 1 33 0 40664 34 21 1 chrX 46568490 46574520 -130399620 - L1HS LINE L1 -1 6154 1 5937 98 39 1 chrX 46574521 46575429 -130398711 + L1PA10 LINE L1 5218 6158 -10 415 367 18 18 chrX 46576272 46576441 -130397699 - MIR3 SINE MIR -6 202 34 556 188 60 0 chrX 46576652 46576769 -130397371 + MLT2B1 LTR ERVL 1 124 -396 1413 184 45 4 chrX 46576769 46577036 -130397104 + MLT1A1 LTR MaLR 88 365 0 365 69 0 17 chrX 46577202 46577260 -130396880 + (CA)n Simple_repeat Simple_repeat 2 58 0 487 246 63 14 chrX 46578048 46578190 -130395950 - MIR SINE MIR -6 256 108 285 308 116 27 chrX 46578200 46578346 -130395794 + MLT1K LTR MaLR 17 175 -413 761 204 53 98 chrX 46578546 46578831 -130395309 + MLT1K LTR MaLR 315 586 -2 776 322 50 13 chrX 46578987 46579288 -130394852 - L3 LINE CR1 -427 1150 839 1225 214 34 0 chrX 46579295 46579590 -130394550 - L1MB7 LINE L1 -64 6120 5816 4165 171 61 19 chrX 46579594 46580706 -130393434 - L1MB4 LINE L1 -1 6415 5249 2074 206 26 24 chrX 46580723 46581296 -130392844 + L1 LINE L1 2672 3245 -2901 8786 224 72 76 chrX 46581299 46582437 -130391703 - L1MB4 LINE L1 -1146 5236 4095 2275 95 3 22 chrX 46582437 46582753 -130391387 - AluSg SINE Alu 0 310 1 8786 224 72 76 chrX 46582753 46583195 -130390945 - L1MB4 LINE L1 -2287 4095 3653 985 195 63 24 chrX 46583195 46583400 -130390740 + AluJo SINE Alu 78 290 -22 8786 224 72 76 chrX 46583400 46586842 -130387298 - L1MB4 LINE L1 -2729 3653 26 2489 212 20 6 chrX 46586850 46587839 -130386301 - L1MB7 LINE L1 -354 5830 4826 4624 233 40 98 chrX 46587922 46590755 -130383385 + L1M2a LINE L1 411 3043 -4523 * 4931 113 4 13 chrX 46590752 46591514 -130382626 + L1PA15 LINE L1 5398 6152 -13 1744 258 63 11 chrX 46591521 46591535 -130382605 + L1M2a LINE L1 2729 2741 -4824 1696 203 7 19 chrX 46591535 46591845 -130382295 + AluJb SINE Alu 1 306 -6 1744 258 63 11 chrX 46591845 46592702 -130381438 + L1M2a LINE L1 2741 3626 -3939 17753 187 42 8 chrX 46592717 46597622 -130376518 + L1M1 LINE L1 19 4756 -2809 1912 146 0 0 chrX 46597622 46597897 -130376243 + AluSq SINE Alu 3 277 -36 303 28 0 0 chrX 46597902 46597938 -130376202 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 17753 187 42 8 chrX 46597938 46598476 -130375664 + L1M1 LINE L1 4759 5657 -1908 253 200 0 0 chrX 46598481 46598541 -130375599 + L1M LINE L1 6691 6750 -973 1929 112 29 4 chrX 46598542 46598818 -130375322 + AluSg SINE Alu 1 283 -27 252 0 0 0 chrX 46598821 46598849 -130375291 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1702 121 7 15 chrX 46598990 46599262 -130374878 + THE1C LTR MaLR 106 375 0 762 269 0 0 chrX 46599333 46599504 -130374636 + MER5B DNA MER1_type 1 171 -7 719 109 0 0 chrX 46599510 46599611 -130374529 - AluSg/x SINE Alu -6 304 204 198 372 11 11 chrX 46599835 46599929 -130374211 - L2 LINE L2 -211 3061 2968 461 219 152 20 chrX 46599965 46600116 -130374024 - MIR SINE MIR -48 214 44 280 304 144 23 chrX 46600193 46600456 -130373684 + L3b LINE CR1 1148 1442 -141 1175 205 86 96 chrX 46601310 46601999 -130372141 + L1MC5 LINE L1 7230 7911 -50 1998 151 10 51 chrX 46602788 46603179 -130370961 + THE1C LTR MaLR 1 375 0 2190 162 64 2 chrX 46603315 46603722 -130370418 + MSTB1 LTR MaLR 1 432 0 373 243 111 32 chrX 46604590 46604779 -130369361 - L1MC5 LINE L1 -32 7929 7726 384 314 5 0 chrX 46604835 46604945 -130369195 + MIR SINE MIR 31 146 -62 201 94 0 0 chrX 46604961 46604993 -130369147 + (TG)n Simple_repeat Simple_repeat 1 32 0 380 305 32 0 chrX 46605080 46605175 -130368965 - MER5A DNA MER1_type -83 106 9 538 186 0 35 chrX 46605354 46605467 -130368673 - MER63B DNA MER1_type 0 436 328 575 175 135 0 chrX 46605468 46605594 -130368546 + L1MB2 LINE L1 5690 5832 -351 * 41213 46 3 2 chrX 46605593 46611740 -130362400 + L1PA3 LINE L1 2 6155 0 1797 117 21 0 chrX 46611757 46612040 -130362100 + L1MB2 LINE L1 5814 6102 -69 760 186 124 133 chrX 46612066 46612404 -130361736 - MER63B DNA MER1_type -100 336 2 287 266 101 18 chrX 46612406 46612515 -130361625 - L3b LINE CR1 -172 1411 1294 228 200 40 0 chrX 46612590 46612640 -130361500 - L2 LINE L2 0 3313 3262 454 284 63 0 chrX 46612770 46612897 -130361243 + MIR3 SINE MIR 13 147 -61 216 0 0 0 chrX 46612904 46612928 -130361212 + (CAT)n Simple_repeat Simple_repeat 1 24 0 839 199 11 31 chrX 46612931 46613122 -130361018 - MIR SINE MIR -5 257 71 232 218 18 18 chrX 46614080 46614135 -130360005 - MIR3 SINE MIR -25 183 129 202 176 0 0 chrX 46614629 46614663 -130359477 + MIR SINE MIR 109 142 -120 206 263 8 59 chrX 46614844 46614962 -130359178 + CT-rich Low_complexity Low_complexity 3 114 0 443 143 0 0 chrX 46615727 46615797 -130358343 - MLT1C LTR MaLR -32 435 366 3056 141 22 6 chrX 46615803 46616348 -130357792 + L1MA8 LINE L1 5732 6285 -6 1209 230 149 11 chrX 46617351 46617699 -130356441 + MSTD LTR MaLR 1 396 0 812 338 132 0 chrX 46618436 46618791 -130355349 - L3b LINE CR1 -75 1508 1107 322 261 21 78 chrX 46618972 46619114 -130355026 + L1ME4a LINE L1 5770 5903 -218 294 255 169 38 chrX 46619145 46619329 -130354811 + L2 LINE L2 3105 3312 -1 294 299 117 25 chrX 46619759 46619939 -130354201 - MIR3 SINE MIR -67 141 4 183 200 0 0 chrX 46620050 46620080 -130354060 - L2 LINE L2 -16 3256 3227 596 237 20 20 chrX 46620093 46620245 -130353895 - MIR SINE MIR -99 163 12 944 221 72 5 chrX 46620637 46620845 -130353295 - MIR SINE MIR -27 235 14 219 214 0 107 chrX 46620976 46621060 -130353080 - MIR SINE MIR -51 211 137 459 360 116 0 chrX 46621068 46621301 -130352839 + MIR SINE MIR 2 261 -1 295 226 16 0 chrX 46621565 46621627 -130352513 + L2 LINE L2 3209 3271 -1 287 49 24 0 chrX 46621661 46621702 -130352438 + (GA)n Simple_repeat Simple_repeat 1 42 0 191 418 66 0 chrX 46621702 46621793 -130352347 - L2 LINE L2 -64 3208 3112 192 200 0 0 chrX 46622684 46622729 -130351411 + CT-rich Low_complexity Low_complexity 1 45 0 198 167 0 0 chrX 46622745 46622781 -130351359 + (CA)n Simple_repeat Simple_repeat 2 37 0 284 312 83 0 chrX 46622819 46622928 -130351212 + MIR SINE MIR 54 171 -91 215 253 0 96 chrX 46623896 46624094 -130350046 + GA-rich Low_complexity Low_complexity 1 179 0 755 66 9 0 chrX 46624384 46624490 -130349650 + (GAAA)n Simple_repeat Simple_repeat 4 110 0 1765 150 0 4 chrX 46624914 46625167 -130348973 + AluSx SINE Alu 38 289 -23 526 288 85 0 chrX 46625679 46625856 -130348284 - MIR SINE MIR -6 256 65 2315 99 0 0 chrX 46626045 46626349 -130347791 - AluSc SINE Alu -5 304 1 224 295 0 32 chrX 46626620 46626715 -130347425 + (CGG)n Simple_repeat Simple_repeat 2 93 0 5405 138 15 7 chrX 46628041 46629002 -130345138 + L1MA3 LINE L1 5338 6305 0 483 287 6 0 chrX 46628996 46629170 -130344970 + L1MA9 LINE L1 2201 2375 -3771 * 28 29 0 0 chrX 46629243 46629278 -130344862 + AT_rich Low_complexity Low_complexity 1 35 0 733 247 16 5 chrX 46629286 46629480 -130344660 + L1PA12 LINE L1 7 202 -7379 * 785 151 0 0 chrX 46629455 46629601 -130344539 + L1 LINE L1 6120 6265 -1319 * 4740 259 36 36 chrX 46629593 46630969 -130343171 + L1PA12 LINE L1 181 2376 -5208 225 0 0 0 chrX 46630969 46630994 -130343146 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4740 259 36 36 chrX 46630994 46631278 -130342862 + L1PA12 LINE L1 2376 2659 -4925 5613 119 25 3 chrX 46631281 46632768 -130341372 + L1PA11 LINE L1 4657 6174 0 7524 204 51 15 chrX 46632799 46635744 -130338396 + L1MA9 LINE L1 3220 6274 -38 189 213 0 0 chrX 46635785 46635832 -130338308 + (CAG)n Simple_repeat Simple_repeat 2 48 0 486 330 50 57 chrX 46635860 46636178 -130337962 - L3 LINE CR1 -1073 504 189 459 283 9 9 chrX 46636503 46636616 -130337524 + MIR3 SINE MIR 75 187 -21 1854 167 0 3 chrX 46636696 46636984 -130337156 + AluSx SINE Alu 1 287 -25 503 259 105 6 chrX 46637749 46637911 -130336229 - MIR SINE MIR -75 187 10 3829 182 47 6 chrX 46638234 46639237 -130334903 - L1MC2 LINE L1 -277 6485 5446 1155 239 55 12 chrX 46639239 46639657 -130334483 - L1MC2 LINE L1 -1370 5194 4759 37892 54 5 1 chrX 46639852 46645766 -130328374 - L1PA4 LINE L1 -1 6154 4 1900 242 22 35 chrX 46645766 46646391 -130327749 - L1MC2 LINE L1 -1763 4801 4185 3814 199 17 15 chrX 46646399 46647212 -130326928 + L1PA12 LINE L1 880 2490 -5094 1258 189 19 55 chrX 46647344 46647651 -130326489 + L1PA12 LINE L1 2445 2740 -4834 * 11442 157 19 19 chrX 46647650 46648267 -130325873 - L1PA13 LINE L1 -142 6021 5406 3520 107 0 21 chrX 46648267 46648789 -130325351 - MER9 LTR ERVK 0 511 1 11442 157 19 19 chrX 46648789 46651046 -130323094 - L1PA13 LINE L1 -757 5406 3143 231 36 0 0 chrX 46651046 46651074 -130323066 + (TG)n Simple_repeat Simple_repeat 1 28 0 11442 157 19 19 chrX 46651074 46651380 -130322760 - L1PA13 LINE L1 -3020 3143 2839 829 219 5 11 chrX 46651380 46651753 -130322387 - L1MC2 LINE L1 -3813 2751 2383 262 108 0 0 chrX 46651819 46651856 -130322284 + L1M1 LINE L1 1085 1121 -6444 1163 237 4 20 chrX 46651936 46652181 -130321959 - AluJo SINE Alu -43 269 29 669 173 81 5 chrX 46652210 46652395 -130321745 - L1MC2 LINE L1 -4185 2379 2181 16024 173 40 23 chrX 46652449 46655729 -130318411 + L1MA2 LINE L1 11 3346 -4219 10941 160 19 8 chrX 46655773 46658065 -130316075 + L1MA2 LINE L1 4412 6758 -965 1567 224 7 0 chrX 46658065 46658360 -130315780 + AluJb SINE Alu 1 297 -15 10941 160 19 8 chrX 46658360 46659337 -130314803 + L1MA2 LINE L1 6758 7723 0 2824 222 38 55 chrX 46659348 46659844 -130314296 - L1MC2 LINE L1 -4476 2088 1585 706 108 27 0 chrX 46659844 46659953 -130314187 + L1MA5 LINE L1 6181 6294 -6 2824 222 38 55 chrX 46659953 46661372 -130312768 - L1MC2 LINE L1 -4979 1585 301 39011 77 3 0 chrX 46661377 46667501 -130306639 - L1PA4 LINE L1 -4 6151 13 976 223 25 8 chrX 46667503 46667745 -130306395 - L1MC2 LINE L1 -6180 384 139 485 271 23 16 chrX 46667757 46667886 -130306254 - L2 LINE L2 -19 3294 3165 28124 115 25 55 chrX 46667903 46674259 -130299881 + L1PA7 LINE L1 1 6149 -5 274 228 57 0 chrX 46674284 46674407 -130299733 + MER113 DNA MER1_type? 85 214 -307 363 262 168 0 chrX 46674637 46674744 -130299396 - MER91C DNA MER1_type -1 139 15 675 286 83 23 chrX 46675071 46675680 -130298460 + L1MC5 LINE L1 7222 7776 -185 297 290 28 47 chrX 46675705 46675812 -130298328 + L3 LINE CR1 454 558 -1019 503 256 8 23 chrX 46675831 46675964 -130298176 + L3 LINE CR1 778 908 -669 526 281 102 0 chrX 46676108 46676275 -130297865 + MIR SINE MIR 20 203 -59 394 307 15 32 chrX 46677877 46678034 -130296106 + MIR SINE MIR 4 154 -68 185 283 0 0 chrX 46678163 46678209 -130295931 + MIR SINE MIR 105 150 -112 278 0 54 0 chrX 46678308 46678345 -130295795 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 249 272 18 23 chrX 46679321 46679409 -130294731 - MIR3 SINE MIR -19 189 100 647 296 29 19 chrX 46679734 46679940 -130294200 - MIR SINE MIR -43 219 12 333 0 0 0 chrX 46680007 46680044 -130294096 + (TC)n Simple_repeat Simple_repeat 1 37 0 296 348 6 61 chrX 46680079 46680243 -130293897 + L2 LINE L2 3116 3270 -2 298 381 0 19 chrX 46680653 46680808 -130293332 - MIR3 SINE MIR -52 156 5 237 302 39 101 chrX 46681281 46681410 -130292730 + MIR3 SINE MIR 12 132 -76 224 369 12 0 chrX 46681423 46681507 -130292633 + (CCCA)n Simple_repeat Simple_repeat 1 85 0 866 270 24 16 chrX 46681542 46681790 -130292350 + MIR SINE MIR 13 262 0 247 262 90 33 chrX 46681798 46681920 -130292220 - L2 LINE L2 -31 3282 3154 243 335 167 12 chrX 46682126 46682377 -130291763 - L2 LINE L2 -400 2914 2625 425 277 0 0 chrX 46682682 46682776 -130291364 + L2 LINE L2 2981 3074 -239 252 59 0 0 chrX 46682883 46682917 -130291223 + (TC)n Simple_repeat Simple_repeat 2 35 0 234 81 0 0 chrX 46682917 46682954 -130291186 + (CA)n Simple_repeat Simple_repeat 1 37 0 432 295 85 40 chrX 46683141 46683341 -130290799 + MIR SINE MIR 8 216 -46 1166 189 15 54 chrX 46684473 46684733 -130289407 - MIR SINE MIR -12 250 1 248 300 33 0 chrX 46685146 46685206 -130288934 - L2 LINE L2 -5 3267 3206 293 188 353 0 chrX 46685300 46685385 -130288755 + L2 LINE L2 3197 3311 -2 256 306 0 0 chrX 46685629 46685691 -130288449 - L3 LINE CR1 -3 1574 1513 207 296 0 3 chrX 46685787 46685914 -130288226 - L3 LINE CR1 -72 1505 1340 245 341 146 9 chrX 46686194 46686420 -130287720 - L2 LINE L2 -191 3081 2825 323 224 39 128 chrX 46686622 46686778 -130287362 - MER102b DNA MER1_type -18 323 182 670 50 20 10 chrX 46687291 46687390 -130286750 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 231 296 28 46 chrX 46687431 46687539 -130286601 + MER5A DNA MER1_type 1 106 -83 189 320 20 50 chrX 46687629 46687729 -130286411 - MIR3 SINE MIR -34 174 78 287 348 111 21 chrX 46688625 46688904 -130285236 - L2 LINE L2 -411 2903 2600 4471 222 37 34 chrX 46688919 46689398 -130284742 - L1ME1 LINE L1 -137 6029 5553 523 116 105 0 chrX 46689398 46689460 -130284680 + L1PA11 LINE L1 6068 6145 -29 186 43 0 0 chrX 46689460 46689483 -130284657 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 523 116 105 0 chrX 46689483 46689515 -130284625 + L1PA11 LINE L1 6145 6172 -2 4471 222 37 34 chrX 46689515 46691233 -130282907 - L1ME1 LINE L1 -613 5553 3840 7719 19 0 19 chrX 46691233 46692806 -130281334 - L1PA3 LINE L1 0 6155 4596 2945 177 15 36 chrX 46692914 46693632 -130280508 - L1MDa LINE L1 -1182 5358 4656 * 9100 176 49 11 chrX 46693631 46696506 -130277634 + L1MA7 LINE L1 3291 6274 -17 3175 230 72 58 chrX 46696590 46697800 -130276340 - L1MDa LINE L1 -2669 3871 2625 2170 114 0 7 chrX 46697800 46698106 -130276034 - AluSx SINE Alu -7 305 2 3175 230 72 58 chrX 46698106 46698700 -130275440 - L1MDa LINE L1 -3915 2625 2041 406 264 0 0 chrX 46698699 46698828 -130275312 - L1ME1 LINE L1 -2798 3348 3220 * 535 216 22 17 chrX 46698832 46699013 -130275127 + L1MB4 LINE L1 2508 2689 -3457 427 190 40 0 chrX 46699024 46699124 -130275016 + L1MB4 LINE L1 3467 3570 -2576 4968 214 24 14 chrX 46699135 46700766 -130273374 + L1MB4 LINE L1 4023 5668 -512 1263 186 10 0 chrX 46700767 46700971 -130273169 + AluJb SINE Alu 2 207 -105 2474 135 6 62 chrX 46701048 46701552 -130272588 + L1MB4 LINE L1 5654 6129 -51 415 311 112 28 chrX 46701627 46701971 -130272169 - L1MDa LINE L1 -1725 4815 4419 2232 131 14 14 chrX 46701971 46702337 -130271803 + MER47A DNA MER2_type 1 366 0 415 311 112 28 chrX 46702337 46702465 -130271675 - L1MDa LINE L1 -2121 4419 4303 231 333 0 0 chrX 46702470 46702533 -130271607 + L2 LINE L2 3134 3196 -76 35442 39 24 1 chrX 46702547 46708000 -130266140 - L1PA3 LINE L1 0 6155 573 7637 8 0 0 chrX 46707993 46708930 -130265210 - L1HS LINE L1 0 6155 5219 * 2690 27 0 0 chrX 46708930 46709264 -130264876 + L1HS LINE L1 4877 5210 -936 * 4365 58 17 0 chrX 46709257 46709841 -130264299 - L1PA3 LINE L1 -5551 595 2 240 296 0 0 chrX 46709842 46709913 -130264227 - L1MDa LINE L1 -2301 4239 4169 488 128 0 0 chrX 46709938 46710024 -130264116 - L1MB4 LINE L1 -1 6179 6094 4223 135 9 1 chrX 46710024 46710703 -130263437 - L1PA13 LINE L1 -1 6162 5476 15260 162 11 9 chrX 46710706 46714777 -130259363 - L1PA11 LINE L1 -2 6566 2484 385 236 9 9 chrX 46714771 46714877 -130259263 - L1MDa LINE L1 -2374 4166 4061 * 4684 155 32 15 chrX 46714892 46716773 -130257367 - L1MA3 LINE L1 0 6305 4262 * 9100 176 49 11 chrX 46716772 46719647 -130254493 + L1MA7 LINE L1 3291 6274 -17 3175 230 72 58 chrX 46719731 46720941 -130253199 - L1MDa LINE L1 -2669 3871 2625 2170 114 0 7 chrX 46720941 46721247 -130252893 - AluSx SINE Alu -7 305 2 3175 230 72 58 chrX 46721247 46721841 -130252299 - L1MDa LINE L1 -3915 2625 2041 406 264 0 0 chrX 46721840 46721969 -130252171 - L1MA3 LINE L1 -2798 3348 3220 * 535 216 22 17 chrX 46721973 46722154 -130251986 + L1MB4 LINE L1 2508 2689 -3457 427 190 40 0 chrX 46722165 46722265 -130251875 + L1MB4 LINE L1 3467 3570 -2576 4968 214 24 14 chrX 46722276 46723907 -130250233 + L1MB4 LINE L1 4023 5668 -512 1263 186 10 0 chrX 46723908 46724112 -130250028 + AluJb SINE Alu 2 207 -105 2474 135 6 62 chrX 46724189 46724693 -130249447 + L1MB4 LINE L1 5654 6129 -51 409 311 112 28 chrX 46724768 46725112 -130249028 - L1M4 LINE L1 -1725 4421 4025 2232 131 14 14 chrX 46725112 46725478 -130248662 + MER47A DNA MER2_type 1 366 0 409 311 112 28 chrX 46725478 46725606 -130248534 - L1M4 LINE L1 -2121 4025 3909 231 333 0 0 chrX 46725611 46725674 -130248466 + L2 LINE L2 3134 3196 -76 39607 45 22 2 chrX 46725688 46731717 -130242423 - L1PA3 LINE L1 0 6155 2 255 357 0 12 chrX 46731725 46731809 -130242331 + L2 LINE L2 3231 3313 0 204 291 12 35 chrX 46731958 46732044 -130242096 + L2 LINE L2 3185 3268 -4 570 291 117 22 chrX 46732274 46732504 -130241636 - MIR SINE MIR -1 261 10 314 186 29 0 chrX 46732505 46732575 -130241565 + MER112 DNA MER1_type 1 72 -188 248 227 30 0 chrX 46732584 46732650 -130241490 + (TA)n Simple_repeat Simple_repeat 1 68 0 381 247 169 0 chrX 46732650 46732804 -130241336 + MER112 DNA MER1_type 75 254 -6 1428 258 112 22 chrX 46732841 46733529 -130240611 + L2 LINE L2 2557 3310 -3 538 324 98 8 chrX 46734096 46734340 -130239800 + L3 LINE CR1 1213 1478 -99 837 289 99 52 chrX 46734343 46734706 -130239434 + L2 LINE L2 2927 3306 -7 214 286 20 0 chrX 46734715 46734764 -130239376 + L3 LINE CR1 1462 1511 -66 271 167 0 0 chrX 46734879 46734921 -130239219 + 5S rRNA rRNA 1 42 -79 718 284 67 0 chrX 46734921 46735252 -130238888 + L1M4 LINE L1 3719 4071 -2075 16418 60 7 6 chrX 46735470 46737984 -130236156 + L1P2 LINE L1 3150 5652 -502 16413 60 4 27 chrX 46738085 46741016 -130233124 + L1PA5 LINE L1 3237 6154 0 3594 110 0 8 chrX 46743621 46744156 -130229984 - L1PA13 LINE L1 -4 6159 5629 933 189 5 70 chrX 46744256 46744457 -130229683 + MER5A DNA MER1_type 2 189 0 1908 127 63 33 chrX 46745071 46745433 -130228707 - THE1C LTR MaLR 0 375 3 8784 125 4 91 chrX 46745435 46747162 -130226978 - THE1C-int LTR MaLR 0 1580 4 1506 180 55 33 chrX 46747165 46747532 -130226608 - THE1C LTR MaLR 0 375 1 673 286 0 15 chrX 46747534 46747730 -130226410 + MIR SINE MIR 70 262 0 224 231 17 154 chrX 46747863 46747980 -130226160 - MIR SINE MIR -72 136 36 1042 159 5 43 chrX 46748722 46748930 -130225210 + MSTB1 LTR MaLR 1 200 -232 6066 168 40 36 chrX 46748952 46750243 -130223897 + L1PA6 LINE L1 11 1306 -4840 * 27022 73 4 6 chrX 46750239 46754712 -130219428 + L1PA6 LINE L1 1724 6183 0 984 136 7 0 chrX 46754718 46754873 -130219267 + L1PA16 LINE L1 6002 6157 -9 730 220 64 32 chrX 46754882 46755100 -130219040 - L1ME3A LINE L1 -36 6134 5910 1170 208 38 8 chrX 46755106 46755342 -130218798 + MSTB1 LTR MaLR 188 430 -2 227 317 124 31 chrX 46755387 46755548 -130218592 - MIR3 SINE MIR -5 203 28 310 309 0 16 chrX 46755890 46756016 -130218124 - MIR SINE MIR -3 259 136 230 205 77 39 chrX 46756016 46756094 -130218046 - MIR SINE MIR -98 164 84 197 133 0 89 chrX 46756314 46756359 -130217781 - MIR SINE MIR -64 144 104 282 272 79 9 chrX 46756759 46756873 -130217267 + MIR3 SINE MIR 35 156 -52 947 213 202 0 chrX 46756901 46757188 -130216952 + Charlie4a DNA MER1_type 1 345 -163 737 208 26 0 chrX 46757188 46757342 -130216798 - L1MB7 LINE L1 -9 6175 6018 2024 229 57 17 chrX 46757351 46757892 -130216248 - MER90 LTR ERV1 -10 565 3 285 296 19 19 chrX 46758072 46758180 -130215960 - MER90-int LTR ERV1 -160 6641 6534 430 202 44 0 chrX 46758700 46758814 -130215326 - L1MA5A LINE L1 -220 6077 5959 * 1790 229 99 29 chrX 46758797 46759165 -130214975 - L1MEc LINE L1 -2623 3592 3251 3139 73 68 7 chrX 46759165 46759603 -130214537 + MER4C LTR ERV1 1 465 0 2087 188 100 25 chrX 46759603 46760081 -130214059 + LTR44 LTR ERV1 3 517 -2 1790 229 99 29 chrX 46760081 46760398 -130213742 - L1MEc LINE L1 -2963 3252 2858 645 216 9 0 chrX 46760401 46760512 -130213628 + MER21B LTR ERV1 3 114 -749 877 160 0 0 chrX 46760519 46760650 -130213490 + FLAM_C SINE Alu 6 136 -7 3791 179 30 6 chrX 46760650 46761294 -130212846 + MER21B LTR ERV1 106 764 -99 923 265 78 56 chrX 46761369 46761680 -130212460 - L1MEc LINE L1 -3351 2864 2561 2070 134 0 19 chrX 46761680 46761993 -130212147 + AluSx SINE Alu 1 307 -5 923 265 78 56 chrX 46761993 46762187 -130211953 - L1MEc LINE L1 -3654 2561 2373 189 0 0 0 chrX 46762187 46762208 -130211932 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 788 159 0 0 chrX 46762213 46762339 -130211801 - FLAM_C SINE Alu -7 126 1 923 265 78 56 chrX 46762339 46762687 -130211453 - L1MEc LINE L1 -3845 2370 1875 2408 77 13 0 chrX 46762687 46762986 -130211154 - AluSp SINE Alu -10 303 1 923 265 78 56 chrX 46762986 46763117 -130211023 - L1MEc LINE L1 -4340 1875 1748 3992 178 39 38 chrX 46763254 46764303 -130209837 - L1MB7 LINE L1 -28 6156 5107 243 225 0 0 chrX 46764421 46764492 -130209648 + CT-rich Low_complexity Low_complexity 2 72 0 280 266 31 0 chrX 46766965 46767029 -130207111 + G-rich Low_complexity Low_complexity 4 69 0 1878 123 23 43 chrX 46767816 46768117 -130206023 + MER1B DNA MER1_type 45 339 0 382 313 80 6 chrX 46770101 46770277 -130203863 + MIR SINE MIR 56 244 -18 202 255 0 0 chrX 46770387 46770438 -130203702 + MIR SINE MIR 93 143 -65 367 288 45 8 chrX 46770745 46770877 -130203263 - MIR SINE MIR -56 152 16 425 283 71 22 chrX 46771738 46771922 -130202218 + MIR SINE MIR 56 248 -14 294 265 69 3 chrX 46772801 46772922 -130201218 + MIR3 SINE MIR 22 158 -50 387 0 0 0 chrX 46773854 46773897 -130200243 + (CA)n Simple_repeat Simple_repeat 2 44 0 1979 141 0 3 chrX 46774253 46774543 -130199597 - AluJb SINE Alu -23 289 1 234 340 19 10 chrX 46774852 46774955 -130199185 + MIR3 SINE MIR 68 171 -37 5895 213 41 45 chrX 46777211 46779031 -130195109 - L1MB7 LINE L1 -1195 4951 3138 3949 228 69 19 chrX 46779070 46780445 -130193695 + L1M4 LINE L1 664 2107 -4539 5114 222 29 47 chrX 46780508 46781874 -130192266 + L1M4 LINE L1 21 1361 -5181 917 274 41 16 chrX 46781874 46782312 -130191828 + L1M4 LINE L1 2235 2683 -3963 924 236 17 8 chrX 46782312 46782578 -130191562 + L1M4 LINE L1 2590 2857 -3787 1874 128 67 14 chrX 46782637 46782934 -130191206 - AluSq SINE Alu 0 313 1 2009 245 57 33 chrX 46782957 46783804 -130190336 - L1MDb LINE L1 -5409 1000 9 518 256 74 4 chrX 46784004 46784168 -130189972 - MIR SINE MIR -92 170 2 182 330 71 9 chrX 46784237 46784349 -130189791 - L2 LINE L2 -235 3037 2919 508 42 0 0 chrX 46784528 46784599 -130189541 + L1PA3 LINE L1 6085 6155 0 290 353 60 5 chrX 46784646 46784847 -130189293 - L2 LINE L2 -706 2608 2397 324 306 70 15 chrX 46784847 46785046 -130189094 - L3b LINE CR1 -260 1323 1114 360 225 0 0 chrX 46785559 46785639 -130188501 + MER116 DNA Mariner 1 80 0 261 0 0 0 chrX 46785719 46785748 -130188392 + (CA)n Simple_repeat Simple_repeat 1 29 0 964 213 0 32 chrX 46785787 46785975 -130188165 + MER63A DNA MER1_type 29 210 0 182 294 59 0 chrX 46785975 46786043 -130188097 + L2 LINE L2 3189 3260 -12 205 223 84 54 chrX 46786188 46786302 -130187838 - MIR SINE MIR -76 132 33 27 29 0 0 chrX 46786764 46786798 -130187342 + AT_rich Low_complexity Low_complexity 1 34 0 835 90 0 0 chrX 46786798 46786909 -130187231 - L1MA1 LINE L1 -9 6293 6183 338 328 26 9 chrX 46788153 46788269 -130185871 - MIR SINE MIR -119 143 26 1621 178 42 3 chrX 46788430 46788716 -130185424 + AluJb SINE Alu 1 297 -15 290 378 5 55 chrX 46788743 46788930 -130185210 + L3 LINE CR1 1016 1192 -385 1866 162 47 44 chrX 46788930 46789134 -130185006 + MLT1A1 LTR MaLR 1 208 -157 2122 112 41 0 chrX 46789134 46789428 -130184712 + AluSx SINE Alu 1 306 -6 1866 162 47 44 chrX 46789428 46789587 -130184553 + MLT1A1 LTR MaLR 208 365 0 290 378 5 55 chrX 46789587 46789616 -130184524 + L3 LINE CR1 1192 1221 -356 795 265 242 21 chrX 46789674 46790109 -130184031 + L2 LINE L2 2777 3303 -10 198 273 39 0 chrX 46790126 46790203 -130183937 + L3 LINE CR1 1246 1325 -252 339 213 130 0 chrX 46790366 46790474 -130183666 - MIR3 SINE MIR -54 154 33 205 130 43 22 chrX 46790765 46790811 -130183329 + GA-rich Low_complexity Low_complexity 5 51 0 465 228 83 7 chrX 46791998 46792143 -130181997 + MIR SINE MIR 77 232 -30 263 256 51 0 chrX 46792256 46792334 -130181806 + MIR SINE MIR 81 162 -100 180 0 0 0 chrX 46795621 46795641 -130178499 + (TA)n Simple_repeat Simple_repeat 2 21 0 504 72 0 0 chrX 46798639 46798708 -130175432 + (TG)n Simple_repeat Simple_repeat 2 70 0 396 0 0 0 chrX 46798707 46798751 -130175389 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 218 139 0 47 chrX 46801265 46801308 -130172832 + (TCC)n Simple_repeat Simple_repeat 2 42 0 198 306 44 13 chrX 46802560 46802687 -130171453 + MIR SINE MIR 21 150 -58 634 294 60 0 chrX 46804397 46804615 -130169525 + MIR SINE MIR 29 259 -3 2414 94 0 0 chrX 46804700 46805009 -130169131 - AluY SINE Alu -2 309 1 188 369 24 0 chrX 46805106 46805190 -130168950 + L2 LINE L2 3186 3271 -1 227 308 42 58 chrX 46805256 46805376 -130168764 - L2 LINE L2 -18 3254 3137 183 279 143 54 chrX 46805365 46805468 -130168672 - L2 LINE L2 -841 2473 2352 * 2434 68 0 0 chrX 46805468 46805760 -130168380 + AluY SINE Alu 1 292 -19 183 279 143 54 chrX 46805760 46805803 -130168337 - L2 LINE L2 -962 2352 2314 * 621 263 16 77 chrX 46805800 46806112 -130168028 + L2 LINE L2 2921 3213 -100 * 1083 256 108 34 chrX 46806105 46806179 -130167961 - L2 LINE L2 -122 3191 3124 2059 157 0 0 chrX 46806179 46806485 -130167655 + 7SLRNA srpRNA srpRNA 2 307 -13 1083 256 108 34 chrX 46806485 46807066 -130167074 - L2 LINE L2 -189 3124 2460 522 325 107 40 chrX 46807084 46807813 -130166327 - L2 LINE L2 -1240 2074 1297 494 201 92 81 chrX 46807886 46808060 -130166080 + MIR SINE MIR 70 245 -17 1462 151 8 0 chrX 46808083 46808334 -130165806 - L1MA7 LINE L1 0 6291 6039 2283 139 41 36 chrX 46808334 46808874 -130165266 - MLT2A2 LTR ERVL -4 550 5 26040 95 6 4 chrX 46808875 46814455 -130159685 - HERVL-A2 LTR ERVL 0 5654 1 2028 161 35 52 chrX 46814461 46815010 -130159130 - MLT2A2 LTR ERVL -10 544 1 393 156 0 83 chrX 46815010 46815106 -130159034 - L1MA7 LINE L1 -244 6047 5960 291 200 0 33 chrX 46815301 46815361 -130158779 + L2 LINE L2 3252 3309 -4 360 243 99 20 chrX 46816075 46816247 -130157893 + MIR SINE MIR 20 203 -59 241 179 30 0 chrX 46816812 46816831 -130157309 + GA-rich Low_complexity Low_complexity 4 21 -51 2154 185 8 0 chrX 46816831 46817193 -130156947 - MLT1A1 LTR MaLR 0 365 1 241 179 30 0 chrX 46817193 46817240 -130156900 + GA-rich Low_complexity Low_complexity 21 72 0 663 248 200 0 chrX 46818579 46818835 -130155305 + LTR33A LTR ERVL 54 344 -179 346 288 153 25 chrX 46818831 46819263 -130154877 + LTR33A LTR ERVL 33 515 -8 * 186 238 79 32 chrX 46821505 46821568 -130152572 + L2 LINE L2 3187 3252 -61 472 305 40 11 chrX 46822512 46822689 -130151451 + MIR SINE MIR 20 201 -61 249 332 82 18 chrX 46822739 46823067 -130151073 + L2 LINE L2 1712 2060 -1254 313 336 89 48 chrX 46823283 46823699 -130150441 + L2 LINE L2 2422 2854 -460 837 185 50 0 chrX 46823922 46824129 -130150011 + MIR SINE MIR 43 261 -1 475 286 8 0 chrX 46824188 46824314 -130149826 - MIR3 SINE MIR -14 194 68 354 300 26 37 chrX 46824358 46824528 -130149612 - MIR SINE MIR -62 146 16 1618 210 107 7 chrX 46825001 46825440 -130148700 - Charlie4a DNA MER1_type -1 507 25 4921 30 0 0 chrX 46826442 46827013 -130147127 - L1PA4 LINE L1 0 6155 5585 274 308 29 0 chrX 46827321 46827425 -130146715 - L3 LINE CR1 -291 1286 1180 191 286 57 0 chrX 46827456 46827526 -130146614 - L3 LINE CR1 -73 1504 1431 2738 201 50 24 chrX 46827747 46828412 -130145728 - L1MD2 LINE L1 -1 6358 5677 3314 252 24 34 chrX 46828420 46828853 -130145287 - L1MD2 LINE L1 -1408 4738 4302 3433 91 23 0 chrX 46828853 46829324 -130144816 + L1PA8 LINE L1 5682 6163 -9 3314 252 24 34 chrX 46829324 46830364 -130143776 - L1MD2 LINE L1 -1844 4302 3327 357 125 0 0 chrX 46830369 46830425 -130143715 + (TA)n Simple_repeat Simple_repeat 1 56 0 4147 171 43 18 chrX 46830426 46830686 -130143454 - L1MB4 LINE L1 -17 6163 5911 369 0 0 0 chrX 46830686 46830727 -130143413 + (TG)n Simple_repeat Simple_repeat 2 42 0 4147 171 43 18 chrX 46830727 46831296 -130142844 - L1MB4 LINE L1 -269 5911 5313 1829 157 15 24 chrX 46831773 46832110 -130142030 - L1MB2 LINE L1 -8 7225 6892 1731 144 153 9 chrX 46832110 46832429 -130141711 - MSTA LTR MaLR -8 420 55 323 91 36 0 chrX 46832429 46832484 -130141656 - MLT2A1 LTR ERVL 0 444 388 277 129 29 0 chrX 46832484 46832554 -130141586 + (TA)n Simple_repeat Simple_repeat 1 72 0 2796 97 27 9 chrX 46832561 46832962 -130141178 - MLT2A1 LTR ERVL -40 475 1 456 69 0 0 chrX 46832962 46833020 -130141120 - MSTA LTR MaLR -370 58 1 3195 176 17 13 chrX 46833020 46833926 -130140214 - L1MB2 LINE L1 -341 6904 5991 4529 163 25 42 chrX 46833926 46834926 -130139214 - MER11C LTR ERVK 0 1071 1 802 213 11 6 chrX 46834927 46835101 -130139039 - L1MB2 LINE L1 -1213 5995 5821 705 191 0 0 chrX 46835127 46835253 -130138887 - L1MB2 LINE L1 -2001 5207 5082 518 217 53 0 chrX 46835252 46835404 -130138736 - L1MB4 LINE L1 -812 5334 5175 * 281 256 184 10 chrX 46835423 46835552 -130138588 - L1MB2 LINE L1 -6703 506 1 1302 249 37 26 chrX 46835564 46835993 -130138147 - L1MB4 LINE L1 -946 5200 4767 3369 179 146 27 chrX 46836003 46836233 -130137907 - L1MA5 LINE L1 -26 6274 6073 1855 201 49 15 chrX 46836233 46836640 -130137500 + MSTB LTR MaLR 2 422 -4 3369 179 146 27 chrX 46836640 46837264 -130136876 - L1MA5 LINE L1 -227 6073 5318 * 8297 182 19 4 chrX 46837256 46838902 -130135238 - L1MA5 LINE L1 -1189 4957 3287 347 43 0 0 chrX 46838905 46838952 -130135188 - L1PA15 LINE L1 -9 6156 6110 15210 235 39 32 chrX 46838957 46844955 -130129185 - L1PA13 LINE L1 -745 6052 2 2498 233 49 50 chrX 46844968 46845656 -130128484 - L1M4c LINE L1 -4516 1787 1099 2340 39 3 3 chrX 46845656 46845941 -130128199 - L1PA4 LINE L1 -4 6151 5867 2498 233 49 50 chrX 46845941 46845955 -130128185 - L1M4c LINE L1 -5204 1099 1086 2702 43 0 0 chrX 46845955 46846260 -130127880 - AluY SINE Alu -6 305 1 2498 233 49 50 chrX 46846260 46846506 -130127634 - L1M4c LINE L1 -5217 1086 777 2442 156 54 75 chrX 46847175 46847840 -130126300 - L1MDb LINE L1 -4754 1652 1002 * 41216 32 21 1 chrX 46847832 46853864 -130120276 - L1PA3 LINE L1 0 6155 1 1885 204 98 60 chrX 46853867 46854829 -130119311 - L1MDb LINE L1 -5311 1098 8 180 316 0 0 chrX 46854960 46855017 -130119123 + MIR SINE MIR 196 252 -10 265 329 0 0 chrX 46855026 46855099 -130119041 - MIR3 SINE MIR -38 170 98 2462 100 105 5 chrX 46855634 46856023 -130118117 + MSTA LTR MaLR 1 428 0 266 261 58 0 chrX 46856201 46856270 -130117870 + L1ME LINE L1 5746 5818 -303 828 240 77 21 chrX 46856615 46856848 -130117292 - MIR SINE MIR -5 257 12 294 73 0 0 chrX 46857925 46857966 -130116174 + (CA)n Simple_repeat Simple_repeat 2 42 0 396 0 0 0 chrX 46858972 46859016 -130115124 + (TTA)n Simple_repeat Simple_repeat 2 45 0 3550 36 9 0 chrX 46859016 46859462 -130114678 - L1PA4 LINE L1 -22 6133 5684 2795 13 0 0 chrX 46862738 46863044 -130111096 + AluY SINE Alu 1 306 -5 719 260 90 23 chrX 46864807 46865055 -130109085 - MIR SINE MIR -4 258 1 275 138 12 88 chrX 46866790 46866870 -130107270 - L1MD1 LINE L1 0 6359 6171 4522 235 61 36 chrX 46866871 46869959 -130104181 + L1MB3 LINE L1 1 3011 -2959 4006 152 19 7 chrX 46869959 46870685 -130103455 + L1MA7 LINE L1 5553 6287 -4 4522 235 61 36 chrX 46870685 46870900 -130103240 + L1MB3 LINE L1 3011 3035 -2935 1087 165 193 8 chrX 46870900 46871154 -130102986 + AluJo SINE Alu 1 301 -1 4522 235 61 36 chrX 46871154 46871521 -130102619 + L1MB3 LINE L1 3035 3391 -2579 13682 115 41 78 chrX 46871528 46873947 -130100193 - L1P3 LINE L1 -2854 3607 1227 2298 110 3 3 chrX 46873947 46874257 -130099883 - AluSg SINE Alu 0 310 1 13682 115 41 78 chrX 46874257 46874672 -130099468 - L1P3 LINE L1 -5234 1227 798 562 170 170 27 chrX 46874675 46874822 -130099318 + L1MB3 LINE L1 3407 3574 -2396 395 218 0 0 chrX 46874822 46874900 -130099240 + L1MB3 LINE L1 3851 3928 -2042 * 2370 213 2 6 chrX 46874898 46875438 -130098702 + L1MB3 LINE L1 4245 4782 -1188 * 12143 117 5 14 chrX 46875435 46877802 -130096338 + L1PA10 LINE L1 3391 5738 -393 1311 93 108 20 chrX 46877802 46878005 -130096135 + L1PA10 LINE L1 5947 6168 0 966 248 51 6 chrX 46878015 46878326 -130095814 + L1MB3 LINE L1 4766 5090 -880 39196 62 4 11 chrX 46878326 46884509 -130089631 + L1PA5 LINE L1 2 6147 -7 1634 159 40 37 chrX 46884521 46884924 -130089216 + L1MB3 LINE L1 5080 5483 -512 1409 173 5 0 chrX 46884927 46885147 -130088993 + AluJo SINE Alu 87 307 -5 1583 166 75 11 chrX 46885152 46885594 -130088546 + L1MB3 LINE L1 5483 5946 -49 250 145 97 0 chrX 46885686 46885748 -130088392 + L1MB3 LINE L1 5937 6004 -3 2443 164 71 54 chrX 46886004 46886620 -130087520 - L1MD1 LINE L1 -72 6564 5938 1626 176 88 65 chrX 46886620 46887144 -130086996 + LTR55 LTR ERV 1 536 -12 348 307 37 31 chrX 46889852 46890015 -130084125 + HERVL74 LTR ERVL 1893 2056 -3629 1881 183 34 6 chrX 46890088 46890443 -130083697 - MLT1A1 LTR MaLR 0 365 1 207 0 0 0 chrX 46890777 46890800 -130083340 + (CA)n Simple_repeat Simple_repeat 2 24 0 4515 156 30 13 chrX 46890884 46892027 -130082113 + L1MB4 LINE L1 5017 6179 -1 287 169 17 0 chrX 46892061 46892120 -130082020 + LTR55 LTR ERV 1 60 -488 40345 36 24 1 chrX 46892120 46898128 -130076012 - L1PA2 LINE L1 -3 6152 2 1333 209 51 68 chrX 46898130 46898600 -130075540 + LTR55 LTR ERV 38 499 -49 630 206 37 26 chrX 46898617 46898794 -130075346 - L1MD1 LINE L1 -811 5942 5783 954 130 0 0 chrX 46900397 46900551 -130073589 + (TA)n Simple_repeat Simple_repeat 1 154 0 1728 161 31 3 chrX 46901370 46901656 -130072484 + AluJb SINE Alu 1 294 -18 2427 251 102 7 chrX 46902569 46903581 -130070559 - L1MD1 LINE L1 -753 5787 4680 828 48 0 0 chrX 46903596 46903701 -130070439 + L1PA4 LINE L1 6051 6155 0 23 0 0 0 chrX 46903754 46903777 -130070363 + AT_rich Low_complexity Low_complexity 1 23 0 1445 88 0 69 chrX 46903788 46904005 -130070135 - AluY SINE Alu -109 202 1 2999 221 23 21 chrX 46904252 46905161 -130068979 - L1M4 LINE L1 -1116 5030 4120 9952 120 52 106 chrX 46905204 46906033 -130068107 - Tigger1 DNA MER2_type -4 2414 1542 8438 60 7 8 chrX 46906033 46907932 -130066208 - L1PA6 LINE L1 -2 6152 4261 9952 120 52 106 chrX 46907932 46909281 -130064859 - Tigger1 DNA MER2_type -876 1542 353 8266 220 48 31 chrX 46909281 46911078 -130063062 - L1PA13 LINE L1 -4958 1829 1 8118 202 89 68 chrX 46911088 46911938 -130062202 - L1MD1 LINE L1 -3890 2650 1819 1864 166 0 3 chrX 46911938 46912228 -130061912 + AluJb SINE Alu 1 289 -23 8118 202 89 68 chrX 46912228 46912402 -130061738 - L1MD1 LINE L1 -4721 1819 1650 1951 134 0 4 chrX 46912402 46912678 -130061462 + AluSx SINE Alu 1 275 -37 8118 202 89 68 chrX 46912678 46914337 -130059803 - L1MD1 LINE L1 -4890 1650 31 2009 104 97 0 chrX 46914366 46914645 -130059495 - AluSx SINE Alu -6 306 1 332 198 74 93 chrX 46914801 46914963 -130059177 + L1M4 LINE L1 1 159 -6383 7562 37 0 0 chrX 46914970 46915933 -130058207 - L1P LINE L1 -895 5251 4289 4136 257 47 31 chrX 46915942 46917415 -130056725 + L1M4 LINE L1 164 1659 -4883 1300 187 12 0 chrX 46917412 46917669 -130056471 - L1 LINE L1 -2083 4063 3804 * 1049 201 193 0 chrX 46917707 46917951 -130056189 - AluSx SINE Alu -11 301 11 1291 167 18 4 chrX 46917964 46918245 -130055895 - L1 LINE L1 -2390 3756 3472 397 326 21 20 chrX 46918272 46918518 -130055622 + L1MA6 LINE L1 467 961 -6207 10755 175 35 25 chrX 46918859 46919747 -130054393 + L1MA6 LINE L1 3281 4158 -3163 1667 208 10 7 chrX 46919747 46920055 -130054085 + AluJo SINE Alu 3 311 -1 10755 175 35 25 chrX 46920055 46920066 -130054074 + L1MA6 LINE L1 4158 4167 -3154 1879 159 3 7 chrX 46920066 46920375 -130053765 + AluJo SINE Alu 1 308 -4 657 84 9 19 chrX 46920375 46920482 -130053658 + LTR7 LTR ERV1 307 412 -38 10755 175 35 25 chrX 46920482 46921542 -130052598 + L1MA6 LINE L1 4167 5214 -2107 1902 206 53 17 chrX 46921542 46921959 -130052181 - Tigger2a DNA MER2_type 0 434 3 10755 175 35 25 chrX 46921959 46923637 -130050503 + L1MA6 LINE L1 5214 6951 -370 1333 204 40 6 chrX 46923687 46924011 -130050129 + L1M4 LINE L1 3949 4283 -1863 192 222 0 67 chrX 46924742 46924787 -130049353 + MIR3 SINE MIR 113 154 -54 * 329 276 179 32 chrX 46924784 46924940 -130049200 + MIR3 SINE MIR 19 197 -11 705 272 80 18 chrX 46925504 46925728 -130048412 - MIR SINE MIR -5 257 20 935 256 14 97 chrX 46926315 46926581 -130047559 - MER102b DNA MER1_type -1088 340 112 1365 97 0 15 chrX 46926581 46926787 -130047353 + L1PB1 LINE L1 5949 6151 0 935 256 14 97 chrX 46926787 46926891 -130047249 - MER102b DNA MER1_type -1316 112 1 336 289 29 10 chrX 46926956 46927060 -130047080 - MIR SINE MIR -50 212 107 636 155 86 0 chrX 46927667 46927783 -130046357 + MER3 DNA MER1_type 6 131 -78 183 114 0 0 chrX 46927783 46927818 -130046322 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 309 277 202 0 chrX 46927830 46927924 -130046216 + L2 LINE L2 3201 3313 0 1316 322 159 52 chrX 46928023 46930665 -130043475 + L2 LINE L2 307 3234 -38 2214 125 0 0 chrX 46930799 46931096 -130043044 - AluSq SINE Alu -16 297 1 189 308 29 67 chrX 46931164 46931268 -130042872 - L2 LINE L2 -7 3306 3207 252 383 102 33 chrX 46931331 46931605 -130042535 + L2 LINE L2 2942 3234 -38 21 0 0 0 chrX 46932157 46932178 -130041962 + AT_rich Low_complexity Low_complexity 1 21 0 1946 135 4 0 chrX 46932180 46932454 -130041686 + AluSx SINE Alu 1 275 -37 200 31 62 0 chrX 46932458 46932490 -130041650 + A-rich Low_complexity Low_complexity 1 34 0 256 268 268 8 chrX 46933613 46933736 -130040404 - L2 LINE L2 0 3313 3159 235 198 99 88 chrX 46933866 46933957 -130040183 - L2 LINE L2 0 3272 3181 1456 342 107 30 chrX 46934040 46935472 -130038668 - L2 LINE L2 -237 3035 1489 727 272 174 3 chrX 46936435 46936740 -130037400 + L1ME4a LINE L1 5382 5738 -2070 444 257 66 90 chrX 46936749 46936861 -130037279 + L1ME4a LINE L1 5791 5904 -217 2513 81 0 0 chrX 46936861 46937168 -130036972 + AluSq SINE Alu 1 307 -6 444 257 66 90 chrX 46937168 46937243 -130036897 + L1ME4a LINE L1 5904 5979 -142 1190 148 25 0 chrX 46937243 46937445 -130036695 - MER3 DNA MER1_type -2 207 1 444 257 66 90 chrX 46937445 46937591 -130036549 + L1ME4a LINE L1 5979 6117 -4 514 351 86 17 chrX 46937721 46938080 -130036060 - L2 LINE L2 -537 2777 2394 621 215 25 0 chrX 46939066 46939187 -130034953 - MIR3 SINE MIR -43 165 42 402 274 27 62 chrX 46939458 46939604 -130034536 - MIR3 SINE MIR -62 146 6 1623 179 13 45 chrX 46941275 46941583 -130032557 - AluJo SINE Alu -14 298 1 189 0 0 0 chrX 46942206 46942227 -130031913 + (TAA)n Simple_repeat Simple_repeat 2 22 0 714 279 73 5 chrX 46942569 46942773 -130031367 - MIR SINE MIR -10 252 35 394 222 111 0 chrX 46945485 46945584 -130028556 - MIR SINE MIR -142 120 11 195 114 0 0 chrX 46945754 46945789 -130028351 + (TA)n Simple_repeat Simple_repeat 2 36 0 1807 181 39 36 chrX 46947136 46947684 -130026456 - MLT2A2 LTR ERVL -7 547 3 2129 195 12 7 chrX 46947709 46948130 -130026010 + MER68 LTR ERV1 140 562 0 445 339 161 32 chrX 46948131 46948689 -130025451 + L2 LINE L2 2232 2861 -453 1675 160 20 5 chrX 46948701 46949329 -130024811 + L1MA3 LINE L1 4824 5569 -731 1558 182 79 4 chrX 46949330 46949610 -130024530 + AluJo SINE Alu 1 301 -11 2620 159 35 12 chrX 46949611 46950128 -130024012 + L1MA3 LINE L1 5777 6305 0 269 231 0 0 chrX 46950269 46950321 -130023819 + L2 LINE L2 3262 3313 0 523 273 154 14 chrX 46951575 46951795 -130022345 - MIR SINE MIR -10 252 2 236 376 17 17 chrX 46952478 46952595 -130021545 - MIR SINE MIR -118 144 28 1680 169 0 11 chrX 46953092 46953371 -130020769 - AluJo SINE Alu -15 297 22 630 267 27 0 chrX 46953799 46953949 -130020191 - MIR3 SINE MIR -11 197 44 830 267 42 38 chrX 46954082 46954322 -130019818 - MIR SINE MIR -21 241 1 330 153 0 0 chrX 46954485 46954544 -130019596 + (CA)n Simple_repeat Simple_repeat 2 60 0 279 316 0 0 chrX 46954597 46954676 -130019464 + MER5A DNA MER1_type 2 80 -109 * 315 271 0 0 chrX 46954673 46954743 -130019397 - MER5A DNA MER1_type -108 81 12 234 136 0 0 chrX 46955587 46955631 -130018509 + (A)n Simple_repeat Simple_repeat 1 44 0 250 261 69 0 chrX 46955662 46955792 -130018348 + L1ME LINE L1 2110 2248 -3898 1318 290 123 37 chrX 46955813 46958081 -130016059 + L1ME LINE L1 2290 4752 -1394 234 0 0 0 chrX 46958136 46958162 -130015978 + (A)n Simple_repeat Simple_repeat 1 26 0 364 333 65 28 chrX 46958162 46958463 -130015677 + L1ME LINE L1 4783 5099 -1047 316 303 58 28 chrX 46958470 46958875 -130015265 + L1ME LINE L1 5211 5629 -492 2031 169 34 5 chrX 46958902 46959280 -130014860 + MSTA LTR MaLR 1 389 -39 35995 87 5 7 chrX 46959287 46965437 -130008703 + L1PA6 LINE L1 11 6147 -7 306 128 0 0 chrX 46965437 46965484 -130008656 + MSTA LTR MaLR 375 421 -7 346 172 0 0 chrX 46966291 46966349 -130007791 + Tigger3(Golem) DNA MER2_type 2 59 -2970 826 114 100 14 chrX 46966350 46966490 -130007650 + Tigger3(Golem) DNA MER2_type 2887 3038 0 1586 177 21 18 chrX 46966535 46966818 -130007322 + AluJo SINE Alu 1 284 -28 392 298 139 24 chrX 46966872 46967243 -130006897 + L1MC/D LINE L1 5269 5668 -614 290 288 85 38 chrX 46967266 46967502 -130006638 + L1ME LINE L1 5563 5809 -312 34 55 0 0 chrX 46967605 46967660 -130006480 + AT_rich Low_complexity Low_complexity 1 55 0 2731 203 38 42 chrX 46967787 46968525 -130005615 - L1MD2 LINE L1 -1 6358 5624 701 270 54 31 chrX 46968691 46968896 -130005244 - MIR SINE MIR -34 228 16 2037 152 134 11 chrX 46968896 46969277 -130004863 + MSTA LTR MaLR 1 428 0 701 270 54 31 chrX 46969277 46969293 -130004847 - MIR SINE MIR -246 16 2 235 324 7 72 chrX 46969683 46969822 -130004318 - L2 LINE L2 -5 3308 3179 343 339 55 0 chrX 46970074 46970183 -130003957 - L2 LINE L2 -3 3269 3155 1118 229 148 22 chrX 46970306 46970712 -130003428 + MLT1D LTR MaLR 1 457 -48 180 0 0 0 chrX 46970712 46970732 -130003408 + (A)n Simple_repeat Simple_repeat 1 20 0 1673 161 38 14 chrX 46970742 46971034 -130003106 + AluJb SINE Alu 1 299 -13 362 254 8 0 chrX 46971034 46971152 -130002988 + L1M4 LINE L1 2275 2393 -3753 1730 179 8 27 chrX 46971157 46971473 -130002667 + MLT1A1 LTR MaLR 5 325 -40 2288 106 144 8 chrX 46971473 46971849 -130002291 + MSTA LTR MaLR 2 428 0 9133 139 19 41 chrX 46971851 46973465 -130000675 + MSTA-int LTR MaLR 3 1580 0 1905 168 134 8 chrX 46973465 46973845 -130000295 + MSTA LTR MaLR 1 428 0 1730 179 8 27 chrX 46973845 46973892 -130000248 + MLT1A1 LTR MaLR 324 365 0 1288 219 0 0 chrX 46973948 46974185 -129999955 - AluJo SINE Alu -75 237 1 3816 221 34 16 chrX 46974199 46975054 -129999086 + L1M4 LINE L1 2866 3749 -2397 1725 147 53 73 chrX 46975054 46975450 -129998690 - MLT1B LTR MaLR 0 390 3 3816 221 34 16 chrX 46975450 46975741 -129998399 + L1M4 LINE L1 3749 4033 -2113 547 213 155 7 chrX 46976027 46976182 -129997958 - MER5B DNA MER1_type 0 178 1 11426 39 1 3 chrX 46976262 46978437 -129995703 - L1PA4 LINE L1 -3 6152 3984 652 220 153 0 chrX 46978471 46978621 -129995519 - MER5B DNA MER1_type 0 178 6 210 238 150 12 chrX 46978702 46978782 -129995358 - MIR SINE MIR -1 261 171 33 107 0 0 chrX 46979021 46979152 -129994988 + AT_rich Low_complexity Low_complexity 1 131 0 1977 157 29 0 chrX 46979152 46979497 -129994643 - MSTA LTR MaLR -73 355 1 9374 168 16 6 chrX 46979497 46981131 -129993009 - MSTA-int LTR MaLR 0 1651 1 2743 134 21 0 chrX 46981131 46981550 -129992590 - MSTA LTR MaLR 0 428 1 1186 179 188 22 chrX 46981550 46981959 -129992181 + LTR54B LTR ERV1 20 496 -2 1738 177 0 32 chrX 46982427 46982737 -129991403 + AluJb SINE Alu 2 301 -11 269 325 12 0 chrX 46983340 46983423 -129990717 + GA-rich Low_complexity Low_complexity 5 88 0 252 210 34 17 chrX 46983440 46983559 -129990581 + GA-rich Low_complexity Low_complexity 4 124 0 429 189 85 9 chrX 46984405 46984511 -129989629 + MER103 DNA DNA 1 114 -52 668 221 160 30 chrX 46984642 46984873 -129989267 + MIR SINE MIR 2 262 0 568 239 9 0 chrX 46984868 46984981 -129989159 - MIR SINE MIR -64 144 31 * 182 214 0 0 chrX 46985399 46985441 -129988699 - MIR SINE MIR -3 259 218 289 302 132 0 chrX 46985478 46985584 -129988556 - MIR SINE MIR -142 120 1 496 216 9 52 chrX 46986143 46986259 -129987881 + MIR3 SINE MIR 58 168 -40 719 155 12 71 chrX 46986280 46986325 -129987815 - L1MB7 LINE L1 -9 6175 6129 1780 155 0 24 chrX 46986325 46986621 -129987519 - AluJb SINE Alu -21 291 3 719 155 12 71 chrX 46986621 46986743 -129987397 - L1MB7 LINE L1 -55 6129 6018 1208 208 13 9 chrX 46987326 46987557 -129986583 - MIR SINE MIR -17 245 14 1505 209 132 19 chrX 46987827 46988243 -129985897 + L1ME3A LINE L1 5569 6059 -111 197 33 33 0 chrX 46988243 46988273 -129985867 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1505 209 132 19 chrX 46988273 46988387 -129985753 + L1ME3A LINE L1 6059 6159 -11 643 248 29 34 chrX 46988818 46989024 -129985116 + MIR SINE MIR 58 262 0 586 228 9 112 chrX 46989538 46989625 -129984515 - MIR SINE MIR -50 212 118 2153 111 39 28 chrX 46989625 46989985 -129984155 - THE1B LTR MaLR 0 364 1 586 228 9 112 chrX 46989985 46990112 -129984028 - MIR SINE MIR -144 118 20 206 97 0 0 chrX 46991443 46991474 -129982666 + MIR SINE MIR 73 103 -159 641 271 24 18 chrX 46991704 46991874 -129982266 + MIR3 SINE MIR 21 191 -17 605 293 98 66 chrX 46992011 46992454 -129981686 + L2 LINE L2 1715 2191 -1123 2548 126 31 5 chrX 46992454 46992867 -129981273 + MSTA LTR MaLR 2 425 -3 605 293 98 66 chrX 46992867 46993140 -129981000 + L2 LINE L2 2191 2454 -860 493 269 142 35 chrX 46993150 46993347 -129980793 + MIR SINE MIR 4 221 -41 4633 258 69 33 chrX 46993372 46994139 -129980001 + L2 LINE L2 1326 2064 -1249 2906 0 0 0 chrX 46994139 46994450 -129979690 - AluYa5 SINE Alu 0 311 1 4633 258 69 33 chrX 46994450 46994744 -129979396 + L2 LINE L2 2064 2346 -967 1094 215 23 101 chrX 46994744 46995140 -129979000 - MLT1A1 LTR MaLR 0 365 1 4633 258 69 33 chrX 46995140 46995284 -129978856 + L2 LINE L2 2346 2483 -830 1602 175 19 35 chrX 46995284 46995599 -129978541 - AluJo SINE Alu -2 310 1 4633 258 69 33 chrX 46995599 46996037 -129978103 + L2 LINE L2 2483 3029 -284 26400 32 1 1 chrX 46996045 46999961 -129974179 + L1PA3 LINE L1 2257 6171 0 826 244 76 36 chrX 46999962 47000237 -129973903 + L2 LINE L2 3023 3308 -5 527 244 30 15 chrX 47000510 47000641 -129973499 + L2 LINE L2 3179 3311 -2 219 315 55 0 chrX 47000668 47000741 -129973399 - L2 LINE L2 -639 2675 2599 342 0 0 0 chrX 47001882 47001920 -129972220 + (TG)n Simple_repeat Simple_repeat 2 39 0 2722 173 2 2 chrX 47002012 47002440 -129971700 - MSTA LTR MaLR 0 428 1 9470 176 31 7 chrX 47002440 47004052 -129970088 - MSTA-int LTR MaLR 0 1651 1 2567 144 2 51 chrX 47004052 47004092 -129970048 - MSTA LTR MaLR 0 428 388 8694 64 0 1 chrX 47004092 47005949 -129968191 + L1PA6 LINE L1 4290 6153 -1 2567 144 2 51 chrX 47005949 47006358 -129967782 - MSTA LTR MaLR -40 388 1 805 166 14 7 chrX 47006437 47006576 -129967564 - L1PA13 LINE L1 -7 6156 6017 15758 177 94 52 chrX 47006576 47010145 -129963995 - L1PA14 LINE L1 -15 7584 4165 1884 144 183 19 chrX 47010145 47010512 -129963628 + MSTA LTR MaLR 1 427 -1 15758 177 94 52 chrX 47010512 47011762 -129962378 - L1PA14 LINE L1 -3434 4165 2968 264 30 0 0 chrX 47011762 47011795 -129962345 + (TG)n Simple_repeat Simple_repeat 2 34 0 15758 177 94 52 chrX 47011795 47014363 -129959777 - L1PA14 LINE L1 -4631 2968 508 633 32 21 11 chrX 47014363 47014456 -129959684 + (TTTTC)n Simple_repeat Simple_repeat 2 95 0 2196 82 20 3 chrX 47014460 47014752 -129959388 - AluSg1 SINE Alu -12 297 1 15758 177 94 52 chrX 47014752 47014890 -129959250 - L1PA14 LINE L1 -7093 506 1 5188 159 15 8 chrX 47014894 47016200 -129957940 - L1PA12 LINE L1 -132 6036 4718 335 168 69 0 chrX 47016239 47016317 -129957823 + MIR3 SINE MIR 100 186 -22 252 325 81 32 chrX 47016342 47016465 -129957675 + L2 LINE L2 2999 3127 -145 285 98 0 0 chrX 47017034 47017075 -129957065 + (CA)n Simple_repeat Simple_repeat 1 41 0 1455 203 25 0 chrX 47017131 47017453 -129956687 - MER33 DNA MER1_type 0 324 1 732 280 82 14 chrX 47017610 47017949 -129956191 - L2 LINE L2 -32 3281 2872 492 241 101 25 chrX 47018035 47018193 -129955947 - L3 LINE CR1 -526 1051 882 1439 215 54 17 chrX 47019094 47019447 -129954693 - LTR8A LTR ERV1 0 727 362 * 3829 144 30 65 chrX 47019445 47020069 -129954071 + MER50 LTR ERV1 29 627 -107 3917 12 0 0 chrX 47020069 47020487 -129953653 - L1PA2 LINE L1 0 6155 5738 3829 144 30 65 chrX 47020487 47020569 -129953571 + MER50 LTR ERV1 627 710 -24 210 291 0 0 chrX 47020719 47020774 -129953366 + MIR SINE MIR 99 153 -55 3680 143 53 5 chrX 47020853 47021435 -129952705 - MER4B LTR ERV1 0 610 1 1793 156 14 14 chrX 47021689 47021984 -129952156 + AluJo SINE Alu 5 299 -13 546 130 40 10 chrX 47021987 47022087 -129952053 + MER4A LTR ERV1 1 103 -561 419 39 19 0 chrX 47022084 47022136 -129952004 + MER4A LTR ERV1 261 313 -351 * 500 144 10 52 chrX 47022127 47022224 -129951916 + MER4A LTR ERV1 572 664 0 3053 98 212 25 chrX 47022226 47022873 -129951267 + MER4A-int LTR ERV1 1 834 -5764 621 130 43 17 chrX 47022938 47023053 -129951087 + MER4A-int LTR ERV1 1262 1379 -5219 311 248 238 0 chrX 47023050 47023151 -129950989 + MER4A-int LTR ERV1 2037 2161 -4170 * 195 42 0 0 chrX 47023212 47023236 -129950904 + (T)n Simple_repeat Simple_repeat 1 24 0 4404 121 15 18 chrX 47023237 47023889 -129950251 + MER4A-int LTR ERV1 198 847 -5911 1474 104 78 23 chrX 47023896 47024164 -129949976 + MER4A-int LTR ERV1 924 1825 -2460 4420 77 55 35 chrX 47024175 47024900 -129949240 + MER4A-int LTR ERV1 1756 2495 -4103 1383 148 74 0 chrX 47024900 47025129 -129949011 - LTR8 LTR ERV1 -434 257 12 3787 106 74 35 chrX 47025134 47025960 -129948180 + MER4A-int LTR ERV1 2731 3681 -2917 * 11302 110 78 15 chrX 47025959 47027847 -129946293 + MER4A-int LTR ERV1 3837 5842 -756 4338 128 63 12 chrX 47031355 47032090 -129942050 + MER4A-int LTR ERV1 5825 6596 -2 582 135 21 10 chrX 47032098 47032194 -129941946 + MER4A LTR ERV1 1 97 -567 * 1583 149 174 76 chrX 47032191 47032559 -129941581 + MER4A LTR ERV1 257 660 -4 239 163 0 0 chrX 47032612 47032655 -129941485 - L2 LINE L2 0 3313 3271 604 234 23 137 chrX 47032709 47032827 -129941313 - L2 LINE L2 0 3313 3183 3088 131 33 31 chrX 47032827 47033316 -129940824 - LTR2B LTR ERV1 0 490 1 604 234 23 137 chrX 47033316 47033504 -129940636 - L2 LINE L2 -130 3183 3042 2154 162 94 27 chrX 47033512 47033950 -129940190 - LTR8A LTR ERV1 -257 462 1 1053 202 24 113 chrX 47033950 47034286 -129939854 - L2 LINE L2 -853 2461 2156 3312 143 72 44 chrX 47034308 47034903 -129939237 + LTR9 LTR ERV1 1 612 0 694 269 66 15 chrX 47034916 47035113 -129939027 + MER63A DNA MER1_type 1 207 -3 234 0 0 0 chrX 47035207 47035233 -129938907 + (A)n Simple_repeat Simple_repeat 1 26 0 729 353 91 41 chrX 47035644 47036457 -129937683 + L2 LINE L2 2422 3272 0 683 186 0 25 chrX 47036479 47036597 -129937543 + AluJo SINE Alu 26 140 -172 1868 168 11 0 chrX 47036597 47036883 -129937257 + AluSx SINE Alu 1 289 -23 857 182 27 0 chrX 47036897 47037045 -129937095 + AluJo SINE Alu 122 273 -39 819 43 26 0 chrX 47037050 47037166 -129936974 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 288 111 0 0 chrX 47037169 47037214 -129936926 - L1 LINE L1 -3815 2331 2287 254 259 21 84 chrX 47037262 47037405 -129936735 - L1MC4 LINE L1 -1295 6747 6614 400 183 0 17 chrX 47037405 47037520 -129936620 + (TA)n Simple_repeat Simple_repeat 2 114 0 6422 140 61 17 chrX 47037608 47038910 -129935230 + L1PB1 LINE L1 1904 3268 -3594 1679 114 12 0 chrX 47038900 47039146 -129934994 + L1PB1 LINE L1 6242 6490 -377 * 2245 112 3 0 chrX 47039148 47039452 -129934688 + L1PB1 LINE L1 6562 6866 -1 2064 191 95 98 chrX 47039767 47039818 -129934322 - MLT1E2 LTR MaLR 0 626 576 1321 205 21 42 chrX 47039818 47040141 -129933999 - AluJo SINE Alu 0 317 1 2064 191 95 98 chrX 47040141 47040711 -129933429 - MLT1E2 LTR MaLR -50 576 5 377 356 53 39 chrX 47040736 47041017 -129933123 + L2 LINE L2 2469 2753 -561 2287 101 3 0 chrX 47041498 47041796 -129932344 + AluSp SINE Alu 1 299 -14 244 234 0 0 chrX 47041971 47042018 -129932122 - Charlie8 DNA MER1_type 0 2417 2371 473 222 118 7 chrX 47042037 47042181 -129931959 - MIR SINE MIR -62 200 41 670 320 134 12 chrX 47043367 47043711 -129930429 + L2 LINE L2 2790 3172 -141 1997 173 24 29 chrX 47043723 47044098 -129930042 - THE1C LTR MaLR 0 375 3 2174 114 9 18 chrX 47044100 47044432 -129929708 - THE1C-int LTR MaLR 0 1580 1252 3483 163 0 0 chrX 47244432 47244989 -129729151 - MSTA-int LTR MaLR -1094 557 1 2404 128 116 21 chrX 47244992 47245381 -129728759 - MSTA LTR MaLR -2 426 1 3340 208 58 15 chrX 47245383 47246298 -129727842 + L1M4 LINE L1 4513 5467 -707 2965 152 22 2 chrX 47246298 47246746 -129727394 - MSTB2 LTR MaLR 0 457 1 3340 208 58 15 chrX 47246746 47246793 -129727347 + L1M4 LINE L1 5467 5511 -663 185 366 97 21 chrX 47246915 47247008 -129727132 - L2 LINE L2 -9 3263 3164 264 267 73 12 chrX 47247155 47247320 -129726820 + L1ME3 LINE L1 5217 5391 -755 40 0 0 0 chrX 47247324 47247364 -129726776 + AT_rich Low_complexity Low_complexity 1 40 0 26 50 0 0 chrX 47247420 47247460 -129726680 + AT_rich Low_complexity Low_complexity 1 40 0 30400 107 15 23 chrX 47247479 47253817 -129720323 + L1PA7 LINE L1 91 6465 -4 2538 161 68 2 chrX 47254587 47255054 -129719086 - L1MB4 LINE L1 0 6180 5683 993 224 163 10 chrX 47255219 47255532 -129718608 + L1ME3 LINE L1 5584 5944 -218 289 106 21 0 chrX 47255689 47255736 -129718404 + L1ME3 LINE L1 5920 5967 -195 4672 154 21 10 chrX 47255736 47256533 -129717607 + L1MC1 LINE L1 5528 6333 0 293 85 0 0 chrX 47256535 47256582 -129717558 + L1M4b LINE L1 1514 1560 -5299 3081 250 69 49 chrX 47256582 47257557 -129716583 + L1M4 LINE L1 10 1003 -5539 3264 226 21 3 chrX 47257615 47258483 -129715657 + L1M4 LINE L1 3249 4131 -2513 3776 170 9 18 chrX 47258485 47259538 -129714602 - L1P5 LINE L1 -531 5620 4570 2191 144 0 0 chrX 47259538 47259850 -129714290 + AluSx SINE Alu 1 312 0 3359 138 27 13 chrX 47259876 47260528 -129713612 - MER83C-int LTR ERV1 -804 4076 2370 8012 168 43 4 chrX 47260528 47261899 -129712241 - MER83C-int LTR ERV1 -3399 1481 58 1274 199 4 0 chrX 47262011 47262237 -129711903 - MER83C LTR ERV1 0 373 147 847 191 0 86 chrX 47262482 47262607 -129711533 + L1MB7 LINE L1 5975 6076 -108 2155 136 7 0 chrX 47262607 47262917 -129711223 - AluSq SINE Alu -1 312 1 847 191 0 86 chrX 47262917 47263001 -129711139 + L1MB7 LINE L1 6076 6166 -18 265 183 17 104 chrX 47263013 47263128 -129711012 + L1M4b LINE L1 1543 1647 -5208 * 423 286 65 49 chrX 47263116 47263361 -129710779 + L1M4b LINE L1 2452 2700 -4438 354 258 149 55 chrX 47263414 47263491 -129710649 + L1M4b LINE L1 2567 2635 -4503 245 75 25 0 chrX 47263491 47263531 -129710609 + (TA)n Simple_repeat Simple_repeat 1 41 0 354 258 149 55 chrX 47263531 47263782 -129710358 + L1M4b LINE L1 2635 2926 -4212 1319 90 6 11 chrX 47264820 47264998 -129709142 + L1PB1 LINE L1 5973 6149 -2 666 185 104 38 chrX 47265107 47265318 -129708822 - L2 LINE L2 0 3313 3089 665 250 58 34 chrX 47265315 47265523 -129708617 + MIR SINE MIR 49 261 -1 * 2038 290 41 48 chrX 47265523 47266092 -129708048 - L2 LINE L2 -213 3100 2529 1903 147 0 0 chrX 47266092 47266371 -129707769 + AluSx SINE Alu 1 279 -33 207 0 0 0 chrX 47266377 47266400 -129707740 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2038 290 41 48 chrX 47266400 47266741 -129707399 - L2 LINE L2 -789 2524 2182 641 229 173 0 chrX 47267141 47267320 -129706820 + MIR SINE MIR 53 262 0 824 174 0 21 chrX 47267516 47267700 -129706440 - AluSg/x SINE Alu 0 319 139 388 75 0 0 chrX 47267700 47267753 -129706387 + MADE1 DNA Mariner 28 80 0 1526 166 126 7 chrX 47267753 47268031 -129706109 - MER21B LTR ERV1 -552 311 1 737 220 116 0 chrX 47268031 47268204 -129705936 - L1ME3A LINE L1 -340 5830 5638 1461 154 51 45 chrX 47268220 47268531 -129705609 - L1MD1 LINE L1 0 6242 5930 2012 181 108 26 chrX 47268571 47268607 -129705533 - MLT1D LTR MaLR -44 461 429 4053 136 34 7 chrX 47268607 47269225 -129704915 + MER41B LTR ERV1 1 635 0 2012 181 108 26 chrX 47269225 47269614 -129704526 - MLT1D LTR MaLR -76 429 1 180 0 0 0 chrX 47269652 47269672 -129704468 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 434 269 164 0 chrX 47269910 47270044 -129704096 - MER5B DNA MER1_type -22 156 1 1599 127 68 12 chrX 47270110 47270362 -129703778 + AluSx SINE Alu 14 279 -33 219 36 0 0 chrX 47270372 47270400 -129703740 + (GA)n Simple_repeat Simple_repeat 2 29 0 1394 34 11 0 chrX 47270400 47270575 -129703565 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 277 95 24 0 chrX 47270670 47270712 -129703428 + MIR SINE MIR 112 154 -108 355 262 28 9 chrX 47271102 47271209 -129702931 + MIR SINE MIR 84 192 -70 23 0 0 0 chrX 47273673 47273696 -129700444 + AT_rich Low_complexity Low_complexity 1 23 0 279 315 45 0 chrX 47274364 47274453 -129699687 + MIR SINE MIR 93 185 -77 300 342 102 36 chrX 47275405 47275601 -129698539 + MIR SINE MIR 36 244 -18 278 248 9 35 chrX 47276315 47276428 -129697712 + CT-rich Low_complexity Low_complexity 1 110 0 2275 91 0 7 chrX 47276496 47276794 -129697346 + AluY SINE Alu 1 296 -15 235 289 92 3 chrX 47276956 47277067 -129697073 + MIR SINE MIR 47 143 -65 415 219 69 37 chrX 47277258 47277488 -129696652 + L2 LINE L2 3028 3242 -71 515 276 59 20 chrX 47278044 47278196 -129695944 - MIR3 SINE MIR -31 177 20 611 267 25 6 chrX 47278743 47278904 -129695236 + MIR SINE MIR 51 214 -48 1739 104 127 8 chrX 47279278 47279538 -129694602 + AluSg1 SINE Alu 1 291 -18 958 108 0 58 chrX 47280158 47280297 -129693843 - FLAM_C SINE Alu -2 131 1 1753 134 25 28 chrX 47280744 47281064 -129693076 - MER33 DNA MER1_type -2 322 4 191 36 36 0 chrX 47281859 47281887 -129692253 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2320 65 0 0 chrX 47284639 47284918 -129689222 + AluY SINE Alu 1 279 -32 205 51 51 0 chrX 47284919 47284958 -129689182 + A-rich Low_complexity Low_complexity 2 42 0 185 214 0 24 chrX 47285435 47285477 -129688663 - MIR SINE MIR -3 259 219 602 295 39 10 chrX 47285628 47285835 -129688305 - MIR SINE MIR -26 236 24 291 130 0 0 chrX 47286591 47286645 -129687495 + (CA)n Simple_repeat Simple_repeat 2 55 0 340 266 312 20 chrX 47286742 47286941 -129687199 - MIR SINE MIR 0 262 6 385 341 11 17 chrX 47287176 47287352 -129686788 + MIR3 SINE MIR 25 199 -9 222 118 0 0 chrX 47287797 47287831 -129686309 + (GA)n Simple_repeat Simple_repeat 1 34 0 530 167 33 120 chrX 47287930 47288080 -129686060 + MSTB2 LTR MaLR 1 137 -320 * 677 214 12 65 chrX 47288077 47288245 -129685895 + MSTB2 LTR MaLR 289 447 -10 2010 129 0 4 chrX 47288245 47288525 -129685615 + AluY SINE Alu 1 279 -32 250 44 22 22 chrX 47288527 47288572 -129685568 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2377 91 3 0 chrX 47288788 47289084 -129685056 + AluSq SINE Alu 1 297 -16 1592 132 48 15 chrX 47290513 47290786 -129683354 + AluJb SINE Alu 1 282 -30 342 0 0 0 chrX 47290789 47290827 -129683313 + (CA)n Simple_repeat Simple_repeat 2 39 0 1921 163 10 13 chrX 47291118 47291431 -129682709 - AluJo SINE Alu 0 312 1 495 246 11 2 chrX 47291509 47291626 -129682514 + MIR SINE MIR 32 147 -62 452 259 185 5 chrX 47291796 47292001 -129682139 - MIR SINE MIR 0 262 21 460 310 46 17 chrX 47292757 47292931 -129681209 - L3 LINE CR1 -211 1366 1188 196 312 45 17 chrX 47292931 47293110 -129681030 + MIR SINE MIR 1 250 -12 412 333 68 0 chrX 47293922 47294054 -129680086 - MIR3 SINE MIR -65 143 3 1949 150 34 0 chrX 47294385 47294678 -129679462 - AluJo SINE Alu -1 311 9 257 272 68 19 chrX 47294916 47295019 -129679121 - MIR SINE MIR -81 181 74 216 328 176 8 chrX 47295031 47295150 -129678990 + MIR SINE MIR 123 261 -1 180 342 148 7 chrX 47295932 47296081 -129678059 + MIR SINE MIR 50 219 -43 1979 135 0 16 chrX 47296656 47296959 -129677181 + AluSx SINE Alu 1 298 -14 289 304 42 115 chrX 47297112 47297146 -129676994 + MIR3 SINE MIR 3 38 -170 7904 168 69 26 chrX 47297146 47299152 -129674988 + L1PA13 LINE L1 3888 5936 -227 1459 151 0 0 chrX 47299152 47299377 -129674763 + AluSx SINE Alu 1 225 -87 7904 168 69 26 chrX 47299377 47299616 -129674524 + L1PA13 LINE L1 5936 6163 0 289 304 42 115 chrX 47299616 47299798 -129674342 + MIR3 SINE MIR 38 203 -5 541 306 140 0 chrX 47300159 47300345 -129673795 - MIR SINE MIR -48 214 3 248 221 205 56 chrX 47300413 47300662 -129673478 + L1ME4a LINE L1 5764 6049 -72 759 191 119 44 chrX 47301437 47301731 -129672409 - Charlie4a DNA MER1_type -7 501 186 2229 93 0 13 chrX 47301736 47301872 -129672268 + AluSq SINE Alu 1 137 -176 2080 110 3 7 chrX 47301872 47302180 -129671960 + AluSp SINE Alu 1 307 -6 2229 93 0 13 chrX 47302180 47302354 -129671786 + AluSq SINE Alu 137 307 -6 1181 101 0 0 chrX 47302354 47302512 -129671628 + AluSg/x SINE Alu 132 289 -21 476 167 14 176 chrX 47302601 47302811 -129671329 - Charlie4a DNA MER1_type -330 178 3 193 327 137 59 chrX 47302832 47303366 -129670774 - L2 LINE L2 0 3272 2695 2528 107 14 44 chrX 47303950 47304249 -129669891 + L1MA5A LINE L1 5535 5841 -456 2119 106 0 0 chrX 47304249 47304555 -129669585 + AluSx SINE Alu 1 306 0 2528 107 14 44 chrX 47304555 47304640 -129669500 + L1MA5A LINE L1 5841 5927 -370 2135 113 0 0 chrX 47304640 47304932 -129669208 + AluSx SINE Alu 2 293 -19 742 110 18 0 chrX 47304932 47305041 -129669099 + L1MA5A LINE L1 6172 6282 -15 2528 107 14 44 chrX 47305041 47305072 -129669068 + L1MA5A LINE L1 5925 6282 -15 678 176 15 30 chrX 47305081 47305212 -129668928 + FLAM_C SINE Alu 1 129 -4 36 23 0 0 chrX 47305217 47305260 -129668880 + AT_rich Low_complexity Low_complexity 1 43 0 265 221 3 0 chrX 47306357 47306411 -129667729 - MIR SINE MIR -62 146 100 519 333 0 43 chrX 47307997 47308161 -129665979 - MIR3 SINE MIR -7 201 46 2127 114 0 3 chrX 47308161 47308460 -129665680 + AluSx SINE Alu 1 298 -14 519 333 0 43 chrX 47308460 47308505 -129665635 - MIR3 SINE MIR -162 46 1 1650 147 16 45 chrX 47309360 47309674 -129664466 + AluJb SINE Alu 1 305 -7 304 234 75 32 chrX 47309835 47309929 -129664211 + MIR SINE MIR 103 200 -62 198 150 0 0 chrX 47309971 47310011 -129664129 + (TAAAAA)n Simple_repeat Simple_repeat 5 44 0 1961 125 0 0 chrX 47310538 47310848 -129663292 - AluSx SINE Alu 0 310 1 2171 92 0 23 chrX 47310919 47311224 -129662916 + AluSx SINE Alu 1 298 -14 272 236 86 64 chrX 47311573 47311713 -129662427 - MER5A DNA MER1_type -7 182 40 910 223 90 0 chrX 47312276 47312464 -129661676 - MER63A DNA MER1_type 0 210 6 236 250 0 0 chrX 47312491 47312547 -129661593 - MIR SINE MIR -109 153 98 186 212 0 0 chrX 47312545 47312578 -129661562 + MIR SINE MIR 67 99 -163 * 467 294 25 37 chrX 47312936 47313099 -129661041 + MIR SINE MIR 96 256 -6 253 274 133 44 chrX 47313278 47313391 -129660749 - MIR SINE MIR -65 143 21 2405 68 0 0 chrX 47313455 47313764 -129660376 - AluY SINE Alu -2 309 1 482 317 82 11 chrX 47314212 47314395 -129659745 + MIR3 SINE MIR 2 197 -11 243 0 0 0 chrX 47316979 47317006 -129657134 + (TG)n Simple_repeat Simple_repeat 1 27 0 218 248 97 110 chrX 47317183 47317328 -129656812 - L2 LINE L2 -212 3060 2918 2093 98 6 25 chrX 47317698 47318013 -129656127 - AluSq SINE Alu -4 309 1 378 42 0 0 chrX 47318121 47318169 -129655971 + (CA)n Simple_repeat Simple_repeat 1 48 0 2069 95 7 3 chrX 47318604 47318899 -129655241 + AluSx SINE Alu 2 297 -15 514 234 25 117 chrX 47319028 47319144 -129654996 - MIR SINE MIR -12 250 158 2343 70 0 16 chrX 47319144 47319460 -129654680 - AluY SINE Alu 0 311 1 514 234 25 117 chrX 47319460 47319540 -129654600 - MIR SINE MIR -104 158 72 1720 36 5 0 chrX 47319764 47319986 -129654154 + L1P LINE L1 2994 3216 -2930 1925 95 0 0 chrX 47320296 47320559 -129653581 + AluSq SINE Alu 45 307 -6 2155 115 0 3 chrX 47321426 47321739 -129652401 + AluSq SINE Alu 1 312 -1 201 333 0 0 chrX 47321968 47322025 -129652115 - L2 LINE L2 -16 3256 3200 322 242 11 33 chrX 47323039 47323130 -129651010 + MER5B DNA MER1_type 10 98 -80 205 341 87 16 chrX 47324004 47324130 -129650010 - MIR3 SINE MIR -9 199 65 298 323 20 10 chrX 47324751 47324850 -129649290 + MIR SINE MIR 54 153 -109 819 139 0 23 chrX 47324855 47324984 -129649156 + AluJb SINE Alu 2 127 -185 2162 78 7 11 chrX 47325848 47326167 -129647973 - AluSg SINE Alu 0 318 1 466 314 30 12 chrX 47326414 47326583 -129647557 - MIR SINE MIR -19 243 72 207 0 0 0 chrX 47327275 47327298 -129646842 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 473 120 0 140 chrX 47327300 47327351 -129646789 - HY4 scRNA scRNA 0 93 61 1659 178 34 0 chrX 47327351 47327643 -129646497 + AluSx SINE Alu 6 307 -5 473 120 0 140 chrX 47327643 47327691 -129646449 - HY4 scRNA scRNA -32 61 8 1663 166 3 3 chrX 47328203 47328486 -129645654 + AluJo SINE Alu 11 293 -19 2265 92 3 0 chrX 47328494 47328797 -129645343 + AluSq SINE Alu 1 304 -9 2173 115 0 3 chrX 47328990 47329303 -129644837 + AluSx SINE Alu 1 312 0 468 51 0 0 chrX 47329788 47329847 -129644293 + (TGG)n Simple_repeat Simple_repeat 2 60 0 481 234 62 55 chrX 47330486 47330614 -129643526 - L2 LINE L2 -4 3309 3181 213 323 83 21 chrX 47330610 47330706 -129643434 + MIR3 SINE MIR 6 107 -101 * 336 318 7 40 chrX 47331464 47331612 -129642528 - MIR SINE MIR -25 237 95 1992 122 0 7 chrX 47332181 47332491 -129641649 + AluSx SINE Alu 1 308 0 294 269 39 9 chrX 47332699 47332816 -129641324 + L1ME LINE L1 5698 5818 -303 315 240 219 0 chrX 47334370 47334466 -129639674 - MIR SINE MIR -55 153 37 2173 113 0 0 chrX 47335450 47335750 -129638390 - AluSx SINE Alu -6 306 7 2214 108 0 10 chrX 47336104 47336418 -129637722 + AluSx SINE Alu 1 311 -1 2307 85 0 0 chrX 47337294 47337589 -129636551 + AluSx SINE Alu 1 295 -17 985 219 70 8 chrX 47338170 47338412 -129635728 - MIR SINE MIR -3 259 3 347 339 23 9 chrX 47338855 47338967 -129635173 + MIR SINE MIR 1 117 -91 346 338 166 0 chrX 47339343 47339488 -129634652 + MIR3 SINE MIR 32 200 -8 1271 71 24 0 chrX 47339602 47339772 -129634368 + AluSp SINE Alu 125 298 -15 207 200 261 0 chrX 47340301 47340366 -129633774 + L2 LINE L2 3232 3313 0 263 270 54 63 chrX 47340426 47340537 -129633603 - MIR3 SINE MIR -15 193 84 230 245 0 20 chrX 47341206 47341255 -129632885 + MIR3 SINE MIR 145 192 -16 442 346 13 13 chrX 47341978 47342134 -129632006 + MIR3 SINE MIR 45 200 -8 531 0 0 0 chrX 47342276 47342335 -129631805 + (TA)n Simple_repeat Simple_repeat 2 60 0 2399 77 0 0 chrX 47342479 47342789 -129631351 - AluSg SINE Alu 0 310 1 361 256 72 133 chrX 47343285 47343465 -129630675 + MIR3 SINE MIR 34 202 -6 200 337 10 0 chrX 47345576 47345677 -129628463 + C-rich Low_complexity Low_complexity 4 105 0 * 216 182 34 45 chrX 47345618 47345706 -129628434 + (CCCCG)n Simple_repeat Simple_repeat 1 87 0 * 242 188 0 71 chrX 47345660 47345745 -129628395 + (CCCGG)n Simple_repeat Simple_repeat 1 79 0 764 292 103 4 chrX 47345872 47346153 -129627987 - L3 LINE CR1 -90 1487 1179 772 158 0 38 chrX 47346472 47346605 -129627535 + FLAM_C SINE Alu 2 129 -14 2021 90 29 0 chrX 47346613 47346892 -129627248 + AluSx SINE Alu 1 287 -25 1576 143 33 50 chrX 47346920 47347220 -129626920 + AluSx SINE Alu 7 301 -11 631 255 16 65 chrX 47347357 47347541 -129626599 + MIR3 SINE MIR 20 194 -14 2105 130 0 0 chrX 47348182 47348483 -129625657 + AluSx SINE Alu 1 301 -11 302 281 56 11 chrX 47348624 47348713 -129625427 - MIR3 SINE MIR -39 169 77 191 274 0 20 chrX 47348718 47348769 -129625371 - L2 LINE L2 -667 2647 2598 4835 156 23 55 chrX 47348779 47349148 -129624992 - L1PA16 LINE L1 -3 6163 5784 2364 75 0 7 chrX 47349148 47349455 -129624685 - AluY SINE Alu -6 305 1 4835 156 23 55 chrX 47349455 47349959 -129624181 - L1PA16 LINE L1 -382 5784 5266 2243 98 0 0 chrX 47349959 47350256 -129623884 - AluSq SINE Alu -16 297 1 4835 156 23 55 chrX 47350256 47351205 -129622935 - L1PA16 LINE L1 -900 5266 4387 1738 161 21 0 chrX 47351209 47351494 -129622646 - AluSx SINE Alu -21 291 1 3952 193 4 38 chrX 47351529 47351978 -129622162 + L1 LINE L1 3564 4027 -2119 2113 123 0 0 chrX 47351978 47352280 -129621860 + AluSx SINE Alu 11 312 0 3952 193 4 38 chrX 47352280 47352367 -129621773 + L1 LINE L1 4027 4115 -2031 2311 80 3 0 chrX 47352367 47352666 -129621474 + AluSg SINE Alu 1 300 -10 3952 193 4 38 chrX 47352666 47352973 -129621167 + L1 LINE L1 4115 4379 -1767 2035 124 3 10 chrX 47353779 47354085 -129620055 + AluSx SINE Alu 2 305 -7 2248 103 3 0 chrX 47354088 47354399 -129619741 + AluSx SINE Alu 1 312 0 349 310 94 44 chrX 47355182 47355385 -129618755 - MIR SINE MIR -22 240 28 186 219 0 0 chrX 47355889 47355930 -129618210 - L2 LINE L2 -23 3249 3209 197 336 42 7 chrX 47356111 47356254 -129617886 + L2 LINE L2 2551 2698 -616 356 40 20 0 chrX 47356916 47356966 -129617174 + (CA)n Simple_repeat Simple_repeat 2 52 0 466 207 119 21 chrX 47357018 47357160 -129616980 + L1M3 LINE L1 5670 5823 -326 2004 126 0 0 chrX 47357165 47357479 -129616661 + AluSq SINE Alu 1 314 0 421 335 113 10 chrX 47357560 47357763 -129616377 + L3 LINE CR1 1284 1507 -70 264 273 68 16 chrX 47357855 47357979 -129616161 - MIR SINE MIR -36 172 34 569 274 22 7 chrX 47358099 47358234 -129615906 - L2 LINE L2 0 3272 3136 378 331 52 13 chrX 47358615 47358769 -129615371 + MIR SINE MIR 18 177 -85 2162 72 6 50 chrX 47358813 47359131 -129615009 + AluY SINE Alu 1 304 -7 2080 100 0 7 chrX 47359156 47359447 -129614693 + AluSq SINE Alu 1 289 -24 291 286 124 9 chrX 47360365 47360470 -129613670 - MIR3 SINE MIR -1 207 91 666 122 0 0 chrX 47361172 47361262 -129612878 - AluS SINE Alu -221 91 2 1972 100 0 35 chrX 47361334 47361624 -129612516 + AluSq SINE Alu 1 280 -33 369 0 0 0 chrX 47361629 47361670 -129612470 + (TAA)n Simple_repeat Simple_repeat 2 42 0 207 275 47 74 chrX 47361679 47361828 -129612312 + L2 LINE L2 3045 3189 -124 409 177 0 0 chrX 47361884 47361963 -129612177 - Alu SINE Alu 0 312 234 935 123 0 0 chrX 47361963 47362093 -129612047 - AluSq/x SINE Alu -183 130 1 1676 176 105 46 chrX 47362094 47362532 -129611608 + MLT1D LTR MaLR 42 505 0 501 333 0 8 chrX 47362532 47362664 -129611476 + L2 LINE L2 3142 3272 0 1798 138 0 82 chrX 47362844 47363184 -129610956 + AluSx SINE Alu 1 312 0 189 295 33 0 chrX 47363280 47363341 -129610799 - L2 LINE L2 0 3272 3210 450 127 0 0 chrX 47363555 47363626 -129610514 + (CA)n Simple_repeat Simple_repeat 2 72 0 1916 111 3 46 chrX 47363642 47363949 -129610191 - AluSg SINE Alu -16 294 1 261 57 0 0 chrX 47363949 47363984 -129610156 + (TA)n Simple_repeat Simple_repeat 1 35 0 487 0 32 0 chrX 47364300 47364363 -129609777 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 1963 106 29 0 chrX 47364366 47364641 -129609499 - AluSg SINE Alu -27 283 1 2305 85 0 0 chrX 47364651 47364956 -129609184 - AluSx SINE Alu -2 310 6 243 204 0 0 chrX 47364956 47365000 -129609140 - AluJ/monomer SINE Alu -258 44 1 966 288 46 79 chrX 47365044 47365649 -129608491 + L2 LINE L2 2443 3030 -242 2221 97 0 3 chrX 47365721 47366019 -129608121 + AluSg SINE Alu 1 297 -13 297 382 30 65 chrX 47366209 47366253 -129607887 - L2 LINE L2 -481 2833 2789 2177 81 0 3 chrX 47366253 47366568 -129607572 - AluSp SINE Alu 0 314 1 297 382 30 65 chrX 47366568 47366784 -129607356 - L2 LINE L2 -525 2789 2581 734 184 44 25 chrX 47367124 47367282 -129606858 - MER46A DNA MER2_type -1 235 75 284 253 24 0 chrX 47367226 47367309 -129606831 + Tigger4(Zombi) DNA MER2_type 2646 2730 -1 * 242 259 153 0 chrX 47367411 47367496 -129606644 - L2 LINE L2 -928 2386 2289 187 333 0 0 chrX 47367635 47367695 -129606445 + L2 LINE L2 2976 3035 -237 306 277 136 63 chrX 47368307 47368642 -129605498 + L2 LINE L2 2730 3098 -174 730 283 0 11 chrX 47368759 47368939 -129605201 + MIR3 SINE MIR 22 199 -9 222 211 58 0 chrX 47369184 47369236 -129604904 - MIR SINE MIR -117 145 91 390 179 211 11 chrX 47369283 47369378 -129604762 + MER81 DNA DNA 1 114 0 705 228 5 85 chrX 47369559 47369748 -129604392 + MER5B DNA MER1_type 2 175 -3 287 282 25 98 chrX 47370457 47370620 -129603520 - L3 LINE CR1 -98 1479 1329 279 259 59 0 chrX 47370624 47370709 -129603431 - L3 LINE CR1 -376 1201 1112 342 0 0 0 chrX 47370843 47370881 -129603259 + (CA)n Simple_repeat Simple_repeat 2 39 0 591 289 118 58 chrX 47370887 47371070 -129603070 - L1MC4a LINE L1 -1896 5912 5741 2377 81 3 0 chrX 47371070 47371379 -129602761 - AluSp SINE Alu -3 310 1 591 289 118 58 chrX 47371379 47371628 -129602512 - L1MC4a LINE L1 -2067 5741 5454 459 0 0 0 chrX 47371630 47371681 -129602459 + (TA)n Simple_repeat Simple_repeat 2 52 0 2257 91 0 0 chrX 47371687 47371984 -129602156 - AluSx SINE Alu -15 297 1 1890 151 0 0 chrX 47372107 47372405 -129601735 - AluSx SINE Alu -14 298 1 2036 105 10 20 chrX 47372667 47372973 -129601167 - AluSq SINE Alu -10 303 1 250 313 122 9 chrX 47373085 47373200 -129600940 + MIR3 SINE MIR 45 172 -36 453 211 0 44 chrX 47373235 47373325 -129600815 + L2 LINE L2 3187 3272 0 202 290 29 103 chrX 47373717 47373787 -129600353 + MIR SINE MIR 40 97 -132 2266 99 0 3 chrX 47373787 47374091 -129600049 + AluSq SINE Alu 1 303 -10 202 290 29 103 chrX 47374091 47374158 -129599982 + MIR SINE MIR 97 167 -62 452 286 66 28 chrX 47374213 47374378 -129599762 - MIR SINE MIR -54 208 34 1952 138 10 3 chrX 47374378 47374683 -129599457 + AluSx SINE Alu 1 307 -5 452 286 66 28 chrX 47374683 47374699 -129599441 - MIR SINE MIR -228 34 20 506 346 108 27 chrX 47374712 47375007 -129599133 - L2 LINE L2 -28 3244 2926 742 263 102 33 chrX 47375135 47375409 -129598731 - L2 LINE L2 -5 3308 3016 866 127 0 8 chrX 47375409 47375543 -129598597 + FLAM_C SINE Alu 6 138 -5 491 229 57 57 chrX 47375545 47375737 -129598403 - L2 LINE L2 -296 3017 2826 2304 99 3 0 chrX 47375798 47376110 -129598030 - AluSp SINE Alu 0 313 1 2291 63 6 35 chrX 47376115 47376431 -129597709 - AluY SINE Alu -4 307 1 2185 100 0 31 chrX 47376456 47376776 -129597364 - AluSq SINE Alu -3 310 1 206 321 72 99 chrX 47376907 47377200 -129596940 - L2 LINE L2 -465 2849 2565 280 282 90 0 chrX 47377299 47377377 -129596763 + MIR3 SINE MIR 109 193 -15 302 299 43 55 chrX 47377964 47378218 -129595922 + L1M4c LINE L1 945 1195 -5189 2320 90 0 0 chrX 47378588 47378900 -129595240 - AluSx SINE Alu 0 312 1 238 325 61 57 chrX 47379226 47379423 -129594717 + MIR SINE MIR 2 187 -63 314 260 21 10 chrX 47379517 47379613 -129594527 - MIR SINE MIR -70 138 42 404 374 16 47 chrX 47380180 47380437 -129593703 + L2 LINE L2 2937 3185 -87 202 185 383 12 chrX 47380457 47380538 -129593602 - MIR SINE MIR 0 262 152 2555 194 10 62 chrX 47380551 47380773 -129593367 + L1MD1 LINE L1 5434 5666 -576 1885 177 87 11 chrX 47380773 47381140 -129593000 - MSTD LTR MaLR 0 396 2 2555 194 10 62 chrX 47381140 47381258 -129592882 + L1MD1 LINE L1 5666 5789 -453 1398 198 14 21 chrX 47381258 47381546 -129592594 + AluJo SINE Alu 5 290 -22 2555 194 10 62 chrX 47381546 47381837 -129592303 + L1MD1 LINE L1 5789 5977 -265 2125 113 7 0 chrX 47381837 47382138 -129592002 + AluSx SINE Alu 1 303 -9 2555 194 10 62 chrX 47382138 47382390 -129591750 + L1MD1 LINE L1 5977 6241 -1 1400 148 21 118 chrX 47382388 47382610 -129591530 + L1MB7 LINE L1 5821 6063 -121 * 1462 179 12 64 chrX 47382610 47382939 -129591201 - AluJo SINE Alu 0 312 1 1400 148 21 118 chrX 47382939 47383039 -129591101 + L1MB7 LINE L1 6063 6171 -13 1989 127 0 0 chrX 47383039 47383331 -129590809 - AluSx SINE Alu -17 295 4 1400 148 21 118 chrX 47383331 47383367 -129590773 + L1MB7 LINE L1 6171 6209 25 2749 87 0 0 chrX 47383367 47383722 -129590418 + THE1A LTR MaLR 1 355 0 11500 92 21 11 chrX 47383722 47384146 -129589994 + THE1A-int LTR MaLR 1 419 -1161 2097 108 0 17 chrX 47384146 47384443 -129589697 - AluSx SINE Alu -15 297 6 11500 92 21 11 chrX 47384443 47385583 -129588557 + THE1A-int LTR MaLR 419 1580 0 2539 93 29 0 chrX 47385583 47385928 -129588212 + THE1A LTR MaLR 1 355 0 512 299 91 67 chrX 47386034 47386439 -129587701 + L1MB2 LINE L1 9 423 -6119 1356 211 53 51 chrX 47386620 47386977 -129587163 + L1MB2 LINE L1 823 1183 -5359 2366 76 0 0 chrX 47386977 47387279 -129586861 + AluY SINE Alu 1 302 -9 1356 211 53 51 chrX 47387279 47387415 -129586725 + L1MB2 LINE L1 1183 1317 -5225 * 2916 224 54 28 chrX 47387403 47388308 -129585832 + L1MB2 LINE L1 2584 3510 -3134 500 171 19 0 chrX 47388312 47388417 -129585723 + CT-rich Low_complexity Low_complexity 4 110 0 948 122 14 0 chrX 47388417 47388564 -129585576 - AluSg/x SINE Alu 0 312 164 4878 224 21 131 chrX 47388566 47388853 -129585287 + L1MB2 LINE L1 3497 3814 -2830 1993 98 4 0 chrX 47388853 47389118 -129585022 + AluSp SINE Alu 1 266 -47 4878 224 21 131 chrX 47389118 47389402 -129584738 + L1MB2 LINE L1 3814 4128 -2516 2259 87 0 3 chrX 47389402 47389702 -129584438 - AluSq SINE Alu -14 299 1 4878 224 21 131 chrX 47389702 47390420 -129583720 + L1MB2 LINE L1 4128 4923 -1721 1965 138 20 0 chrX 47390420 47390724 -129583416 + AluSx SINE Alu 1 310 -2 4878 224 21 131 chrX 47390724 47390831 -129583309 + L1MB2 LINE L1 4923 5040 -1604 1958 139 0 16 chrX 47390831 47391147 -129582993 + AluSx SINE Alu 1 311 -1 4878 224 21 131 chrX 47391147 47392016 -129582124 + L1MB2 LINE L1 5040 5474 -1170 1895 116 35 0 chrX 47392016 47392301 -129581839 + AluY SINE Alu 1 295 -16 4878 224 21 131 chrX 47392301 47392510 -129581630 + L1MB2 LINE L1 5474 5704 -940 * 40462 37 26 1 chrX 47392495 47398527 -129575613 + L1PA2 LINE L1 1 6155 0 7172 94 15 0 chrX 47398561 47400346 -129573794 + L1PA7 LINE L1 4352 6152 -2 1786 149 42 0 chrX 47400388 47400677 -129573463 + AluSg SINE Alu 4 304 -6 4821 164 9 38 chrX 47400678 47400806 -129573334 + L1MB2 LINE L1 5679 5809 -860 1967 157 81 19 chrX 47400806 47401176 -129572964 - MSTD LTR MaLR -3 393 1 4821 164 9 38 chrX 47401176 47401772 -129572368 + L1MB2 LINE L1 5809 6372 -297 2127 114 16 0 chrX 47401772 47402078 -129572062 + AluSx SINE Alu 1 311 -1 4821 164 9 38 chrX 47402078 47402348 -129571792 + L1MB2 LINE L1 6372 6648 -21 328 135 58 0 chrX 47402349 47402401 -129571739 - AluJb SINE Alu -11 290 236 3781 169 16 4 chrX 47402444 47403150 -129570990 + L1MB4 LINE L1 5467 6180 0 233 230 380 10 chrX 47403223 47403323 -129570817 - L2 LINE L2 -19 3294 3158 2140 106 0 0 chrX 47403338 47403630 -129570510 - AluY SINE Alu -19 292 1 37 23 0 0 chrX 47404139 47404183 -129569957 + AT_rich Low_complexity Low_complexity 1 44 0 311 240 178 0 chrX 47404336 47404465 -129569675 - MIR SINE MIR -2 260 109 200 86 29 0 chrX 47404770 47404805 -129569335 + (CA)n Simple_repeat Simple_repeat 1 36 0 470 200 45 55 chrX 47405297 47405407 -129568733 - AluJb SINE Alu -81 231 123 538 294 156 0 chrX 47405963 47406181 -129567959 + MIR SINE MIR 5 256 -6 491 205 94 17 chrX 47406277 47406394 -129567746 + L2 LINE L2 3188 3313 0 293 235 82 12 chrX 47406409 47406494 -129567646 - L2 LINE L2 -33 3280 3190 1793 169 7 0 chrX 47406513 47406803 -129567337 + AluSx SINE Alu 3 294 -18 2290 88 3 0 chrX 47406805 47407113 -129567027 + AluSg1 SINE Alu 1 309 0 952 157 0 0 chrX 47407129 47407276 -129566864 + AluJb SINE Alu 141 287 -25 1464 311 41 10 chrX 47407429 47408039 -129566101 - L2 LINE L2 -330 2983 2347 1513 266 22 5 chrX 47408217 47408627 -129565513 - L2 LINE L2 -547 2767 2351 482 288 21 47 chrX 47408764 47409000 -129565140 + L2 LINE L2 2159 2388 -926 926 193 105 48 chrX 47409015 47409243 -129564897 + MIR SINE MIR 5 245 -17 222 211 0 0 chrX 47409260 47409298 -129564842 + (ATG)n Simple_repeat Simple_repeat 2 39 0 528 182 0 50 chrX 47409574 47409695 -129564445 - MER3 DNA MER1_type -5 204 90 715 229 16 83 chrX 47409701 47409893 -129564247 + MIR SINE MIR 34 212 -50 1992 132 0 10 chrX 47409914 47410217 -129563923 - AluSq SINE Alu -10 303 4 286 209 181 67 chrX 47410218 47410323 -129563817 + MIR3 SINE MIR 67 183 -25 554 280 73 69 chrX 47410409 47410670 -129563470 - MIR SINE MIR 0 262 1 287 314 38 19 chrX 47410800 47410905 -129563235 - L2 LINE L2 -653 2661 2555 220 319 133 26 chrX 47411091 47411204 -129562936 - L2 LINE L2 -793 2521 2397 396 250 83 15 chrX 47411920 47412052 -129562088 - MIR3 SINE MIR -3 205 65 233 357 112 0 chrX 47412127 47412225 -129561915 + MIR SINE MIR 31 139 -69 2084 105 0 3 chrX 47413593 47413879 -129560261 - AluSc SINE Alu -24 285 1 1798 136 3 30 chrX 47413925 47414227 -129559913 - AluSq SINE Alu -19 294 1 205 262 0 16 chrX 47414252 47414313 -129559827 + L2 LINE L2 3001 3060 -212 308 253 35 23 chrX 47414570 47414657 -129559483 + MIR SINE MIR 45 132 -76 307 275 20 7 chrX 47414774 47415076 -129559064 + CT-rich Low_complexity Low_complexity 1 306 0 449 297 34 0 chrX 47415417 47415535 -129558605 - MIR SINE MIR -64 144 23 1732 177 0 3 chrX 47415584 47415883 -129558257 + AluJo SINE Alu 1 298 -14 1211 189 45 51 chrX 47415883 47416196 -129557944 + AluJb SINE Alu 1 311 -1 197 333 104 10 chrX 47416279 47416375 -129557765 + L2 LINE L2 3150 3254 -18 188 332 62 15 chrX 47416457 47416587 -129557553 + MIR SINE MIR 33 167 -58 186 103 0 0 chrX 47416614 47416643 -129557497 + (A)n Simple_repeat Simple_repeat 1 29 0 251 360 79 0 chrX 47417053 47417142 -129556998 + MIR SINE MIR 45 140 -68 580 233 65 0 chrX 47417176 47417321 -129556819 + MIR3 SINE MIR 7 161 -47 505 302 22 28 chrX 47417346 47417525 -129556615 + MIR3 SINE MIR 30 207 -1 494 285 21 21 chrX 47418498 47418642 -129555498 + MIR3 SINE MIR 52 195 -13 405 277 0 18 chrX 47418956 47419068 -129555072 + MIR3 SINE MIR 60 169 -39 2227 100 0 0 chrX 47419390 47419691 -129554449 + AluSx SINE Alu 2 302 -10 2084 109 0 0 chrX 47420188 47420473 -129553667 - AluSx SINE Alu -27 285 1 2159 100 10 0 chrX 47420738 47421039 -129553101 + AluSg SINE Alu 1 304 -6 1547 116 42 4 chrX 47423136 47423377 -129550763 + AluSq SINE Alu 62 311 -2 180 0 0 0 chrX 47424014 47424034 -129550106 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 201 147 0 0 chrX 47424253 47424287 -129549853 + (CAG)n Simple_repeat Simple_repeat 1 34 0 209 33 33 0 chrX 47424385 47424415 -129549725 + (GA)n Simple_repeat Simple_repeat 1 31 0 1812 129 4 0 chrX 47426678 47426950 -129547190 + AluSx SINE Alu 21 293 -19 1599 102 0 9 chrX 47426953 47427178 -129546962 + AluSx SINE Alu 1 223 -89 228 103 0 0 chrX 47427180 47427219 -129546921 + AluSx SINE Alu 262 300 -2 5578 98 23 63 chrX 47427250 47427461 -129546679 + L1PA15 LINE L1 5121 5339 -826 213 65 0 0 chrX 47427461 47427492 -129546648 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2075 93 7 13 chrX 47427494 47427794 -129546346 - AluSq SINE Alu -15 298 1 5578 98 23 63 chrX 47427794 47428036 -129546104 + L1PA15 LINE L1 5340 5590 -575 1806 152 13 19 chrX 47428036 47428345 -129545795 + AluJo SINE Alu 1 307 -5 5578 98 23 63 chrX 47428345 47428556 -129545584 + L1PA15 LINE L1 5590 5808 -357 1836 146 3 0 chrX 47428556 47428869 -129545271 + AluJb SINE Alu 1 312 0 5578 98 23 63 chrX 47428869 47428919 -129545221 + L1PA15 LINE L1 5808 5858 -307 1775 157 0 0 chrX 47428919 47429206 -129544934 + AluSx SINE Alu 9 295 -17 5578 98 23 63 chrX 47429206 47429550 -129544590 + L1PA15 LINE L1 5858 6155 -10 1561 127 120 8 chrX 47429552 47429811 -129544329 + AluSg1 SINE Alu 1 288 -21 23 33 0 0 chrX 47429811 47429841 -129544299 + AT_rich Low_complexity Low_complexity 1 30 0 222 314 58 23 chrX 47430564 47430650 -129543490 + L2 LINE L2 3184 3272 0 398 327 13 19 chrX 47430866 47431022 -129543118 - MIR3 SINE MIR -3 205 51 252 100 0 0 chrX 47432742 47432782 -129541358 + (TC)n Simple_repeat Simple_repeat 2 41 0 732 135 54 0 chrX 47432784 47432895 -129541245 - FLAM_C SINE Alu -15 118 2 293 167 0 0 chrX 47432899 47432947 -129541193 - MIR SINE MIR -113 149 102 2082 134 0 0 chrX 47433672 47433978 -129540162 + AluSx SINE Alu 3 308 -4 247 246 15 15 chrX 47434560 47434625 -129539515 + CT-rich Low_complexity Low_complexity 1 65 0 249 179 0 119 chrX 47434910 47434994 -129539146 + GA-rich Low_complexity Low_complexity 3 76 0 210 37 0 0 chrX 47435201 47435228 -129538912 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1842 136 0 14 chrX 47435231 47435517 -129538623 - AluSx SINE Alu -30 282 1 2060 84 52 42 chrX 47436345 47436654 -129537486 + AluSx SINE Alu 1 312 0 243 255 120 53 chrX 47437047 47437195 -129536945 - MIR SINE MIR -65 143 30 2238 159 87 3 chrX 47437923 47438312 -129535828 + MSTB LTR MaLR 1 422 -4 401 200 20 20 chrX 47439525 47439625 -129534515 - L1MC5 LINE L1 -36 7925 7826 200 324 141 42 chrX 47439732 47439874 -129534266 - L2 LINE L2 -8 3264 3109 955 131 71 24 chrX 47439960 47440128 -129534012 - AluSg/x SINE Alu 0 310 135 898 192 66 0 chrX 47440128 47440295 -129533845 + MER58A DNA MER1_type 47 224 0 604 185 51 96 chrX 47440740 47440918 -129533222 - MIR3 SINE MIR -1 207 38 427 308 34 10 chrX 47440933 47441081 -129533059 - MIR3 SINE MIR -51 157 20 248 288 62 0 chrX 47441876 47441956 -129532184 - MIR3 SINE MIR -45 163 79 299 336 74 13 chrX 47443268 47443417 -129530723 + MIR SINE MIR 10 167 -95 15969 111 11 39 chrX 47443453 47445369 -129528771 + L1PA7 LINE L1 8 1840 -4621 3706 113 0 4 chrX 47445369 47445882 -129528258 + MER9 LTR ERVK 1 511 0 15969 111 11 39 chrX 47445882 47447577 -129526563 + L1PA7 LINE L1 1840 3580 -2881 12954 85 0 21 chrX 47447577 47449388 -129524752 + L1PA7 LINE L1 3878 5651 -818 1953 117 0 7 chrX 47449388 47449703 -129524437 - AluSg SINE Alu 0 314 2 12954 85 0 21 chrX 47449703 47450506 -129523634 + L1PA7 LINE L1 5651 6469 0 1999 112 3 7 chrX 47450533 47450847 -129523293 + AluSx SINE Alu 1 313 0 2128 89 4 0 chrX 47451130 47451449 -129522691 - AluSp SINE Alu 0 321 2 638 202 37 0 chrX 47451472 47451581 -129522559 - FLAM_C SINE Alu -25 118 6 182 365 7 68 chrX 47451602 47451750 -129522390 - L3b LINE CR1 -195 1388 1250 1978 120 0 0 chrX 47451918 47452250 -129521890 - AluSq SINE Alu 0 334 3 2081 109 3 7 chrX 47452267 47452561 -129521579 - AluSq SINE Alu -18 295 3 243 0 0 0 chrX 47452647 47452677 -129521463 + L1MA4A LINE L1 6100 6129 -174 1809 155 0 34 chrX 47452943 47453266 -129520874 - AluJo SINE Alu 0 312 1 432 0 0 0 chrX 47453374 47453422 -129520718 + (TA)n Simple_repeat Simple_repeat 2 49 0 2126 108 0 0 chrX 47453451 47453746 -129520394 + AluSx SINE Alu 1 295 -17 444 314 92 33 chrX 47453912 47454218 -129519922 + L1MC4a LINE L1 4987 5310 -836 1235 252 84 64 chrX 47454223 47454486 -129519654 + L1MC4a LINE L1 5318 5574 -2234 2023 120 0 10 chrX 47454486 47454785 -129519355 + AluSx SINE Alu 2 297 -15 1235 252 84 64 chrX 47454785 47455128 -129519012 + L1MC4a LINE L1 5574 5936 -1872 23 54 0 0 chrX 47455259 47455296 -129518844 + AT_rich Low_complexity Low_complexity 1 37 0 2033 107 14 0 chrX 47455519 47455810 -129518330 + AluSg SINE Alu 1 295 -15 5219 167 20 16 chrX 47455985 47456646 -129517494 + L1P LINE L1 2059 2727 -3419 2240 98 0 0 chrX 47456646 47456943 -129517197 + AluSq SINE Alu 1 297 -16 5219 167 20 16 chrX 47456943 47457303 -129516837 + L1P LINE L1 2727 3084 -3062 444 250 119 28 chrX 47457475 47457662 -129516478 - MIR3 SINE MIR 0 208 2 1968 103 11 0 chrX 47458176 47458449 -129515691 + AluSq SINE Alu 34 309 -4 2576 101 31 14 chrX 47458944 47459020 -129515120 + THE1B LTR MaLR 1 74 -290 4997 42 0 3 chrX 47459020 47459613 -129514527 - LTR10C LTR ERV1 0 591 1 2576 101 31 14 chrX 47459613 47459894 -129514246 + THE1B LTR MaLR 74 364 0 805 115 9 0 chrX 47460462 47460575 -129513565 + MLT1B LTR MaLR 8 121 -269 2122 79 4 14 chrX 47460581 47460861 -129513279 + AluSg SINE Alu 1 277 -33 2147 93 30 0 chrX 47463951 47464252 -129509888 - AluSg SINE Alu 0 310 1 1429 146 0 118 chrX 47464505 47464570 -129509570 + MLT1B LTR MaLR 113 184 -206 2352 77 0 3 chrX 47464570 47464882 -129509258 + AluY SINE Alu 1 311 0 2276 81 7 3 chrX 47464891 47465189 -129508951 + AluSc SINE Alu 1 299 -10 1429 146 0 118 chrX 47465189 47465428 -129508712 + MLT1B LTR MaLR 192 390 0 184 292 0 0 chrX 47465615 47465663 -129508477 + MIR SINE MIR 204 251 -11 1693 161 10 16 chrX 47466228 47466532 -129507608 + AluJo SINE Alu 1 302 -10 957 201 98 130 chrX 47466533 47466911 -129507229 + MLT1A1 LTR MaLR 30 364 -1 192 278 21 52 chrX 47466979 47467076 -129507064 - MIR SINE MIR -104 158 65 249 303 79 0 chrX 47467105 47467181 -129506959 + L2 LINE L2 3168 3249 -23 308 312 110 23 chrX 47468217 47468435 -129505705 - MIR SINE MIR -15 247 11 287 363 0 0 chrX 47468512 47468636 -129505504 + CT-rich Low_complexity Low_complexity 4 127 0 436 283 87 0 chrX 47468801 47468939 -129505201 + MIR SINE MIR 3 152 -110 1986 109 0 35 chrX 47468973 47469284 -129504856 + AluSq SINE Alu 1 300 -13 1171 117 0 0 chrX 47469284 47469446 -129504694 + AluSg/x SINE Alu 134 295 -17 685 171 9 0 chrX 47469610 47469721 -129504419 + FLAM_C SINE Alu 2 113 -30 1993 119 3 82 chrX 47469723 47469993 -129504147 + LTR8 LTR ERV1 1 241 -450 1873 118 7 4 chrX 47469993 47470341 -129503799 + AluSx SINE Alu 1 349 0 1993 119 3 82 chrX 47470341 47470412 -129503728 + LTR8 LTR ERV1 241 316 -375 2012 107 3 27 chrX 47470438 47470792 -129503348 - MER4A LTR ERV1 0 664 261 526 176 12 0 chrX 47470814 47470899 -129503241 + AluS SINE Alu 2 87 -226 517 191 0 0 chrX 47470918 47471002 -129503138 - LTR8 LTR ERV1 0 691 608 1109 169 26 5 chrX 47571004 47571199 -129402941 - MLT1D LTR MaLR -306 199 1 2552 66 0 0 chrX 47573100 47573404 -129400736 + AluY SINE Alu 1 304 -7 2338 99 3 6 chrX 47573700 47574012 -129400128 - AluSx SINE Alu -1 311 1 196 286 86 0 chrX 47574855 47574925 -129399215 - L2 LINE L2 -39 3233 3158 457 246 8 37 chrX 47574977 47575111 -129399029 + MER94 DNA DNA 2 131 -3 384 244 122 71 chrX 47575250 47575504 -129398636 - L2 LINE L2 -1 3312 3046 1834 140 3 11 chrX 47575715 47576001 -129398139 + AluJb SINE Alu 1 284 -28 1660 52 0 0 chrX 47576899 47577109 -129397031 - L1PA13 LINE L1 -1 6162 5953 2686 56 14 0 chrX 47577109 47577466 -129396674 + L1PA13 LINE L1 5591 5952 -216 23 0 0 0 chrX 47577887 47577910 -129396230 + AT_rich Low_complexity Low_complexity 1 23 0 201 135 58 0 chrX 47578933 47578985 -129395155 + CT-rich Low_complexity Low_complexity 2 56 0 399 310 99 64 chrX 47579840 47580153 -129393987 - L2 LINE L2 -33 3239 2916 252 255 57 142 chrX 47580248 47580389 -129393751 + L2 LINE L2 3136 3264 -8 2286 94 3 0 chrX 47580409 47580706 -129393434 - AluSq SINE Alu -15 298 1 4879 211 51 72 chrX 47581090 47581199 -129392941 + L1M4 LINE L1 922 1032 -6431 2682 76 50 0 chrX 47581199 47581556 -129392584 + MER51B LTR ERV1 3 377 0 4879 211 51 72 chrX 47581556 47581603 -129392537 + L1M4 LINE L1 1032 1078 -6385 2257 117 0 0 chrX 47581603 47581903 -129392237 + AluSq SINE Alu 1 300 -13 4879 211 51 72 chrX 47581903 47582933 -129391207 + L1M4 LINE L1 1078 2072 -5391 624 234 0 16 chrX 47582933 47583057 -129391083 + FLAM_A SINE Alu 1 122 -11 4879 211 51 72 chrX 47583057 47583412 -129390728 + L1M4 LINE L1 2072 2433 -5030 369 0 0 0 chrX 47583412 47583453 -129390687 + (CA)n Simple_repeat Simple_repeat 2 42 0 406 206 7 68 chrX 47583456 47583495 -129390645 - L1M4 LINE L1 -4866 1676 1636 1788 81 143 12 chrX 47583495 47583754 -129390386 - AluSx SINE Alu -9 293 1 406 206 7 68 chrX 47583754 47583860 -129390280 - L1M4 LINE L1 -4906 1636 1540 234 91 0 0 chrX 47583873 47583906 -129390234 + (TG)n Simple_repeat Simple_repeat 2 34 0 498 244 58 29 chrX 47583910 47584115 -129390025 + MER41E-int LTR ERV1 6391 6601 -75 1830 131 28 41 chrX 47584147 47584438 -129389702 + AluSx SINE Alu 11 297 -15 2601 100 11 5 chrX 47584467 47584847 -129389293 + MER41E LTR ERV1 17 398 -114 2227 237 53 69 chrX 47584857 47585319 -129388821 + L1M4 LINE L1 2361 2829 -4736 2490 93 34 6 chrX 47585319 47585672 -129388468 + THE1B LTR MaLR 2 364 0 2227 237 53 69 chrX 47585672 47586364 -129387776 + L1M4 LINE L1 2829 3531 -4034 2072 137 14 0 chrX 47586364 47586656 -129387484 + AluSx SINE Alu 1 296 -16 2227 237 53 69 chrX 47586656 47587478 -129386662 + L1M4 LINE L1 3531 4245 -3320 709 168 0 0 chrX 47587513 47587644 -129386496 + L1M4 LINE L1 5496 5626 -1939 2822 153 16 186 chrX 47587644 47587956 -129386184 + L1M4 LINE L1 5855 6218 -1347 2313 102 0 7 chrX 47587956 47588250 -129385890 + AluSq SINE Alu 2 293 -20 2822 153 16 186 chrX 47588250 47588839 -129385301 + L1M4 LINE L1 6218 6530 -1035 263 26 51 0 chrX 47588839 47588878 -129385262 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 2822 153 16 186 chrX 47588878 47589097 -129385043 + L1M4 LINE L1 6530 6785 -780 3083 227 40 20 chrX 47589097 47589520 -129384620 + L1PB3 LINE L1 1788 2201 -3945 2205 141 0 0 chrX 47589520 47589825 -129384315 + AluSx SINE Alu 1 305 -7 3083 227 40 20 chrX 47589825 47590511 -129383629 + L1PB3 LINE L1 2201 2918 -3228 2347 100 7 0 chrX 47591272 47591582 -129382558 - AluSx SINE Alu 0 312 1 5841 147 11 21 chrX 47592418 47592526 -129381614 + L1PB3 LINE L1 4549 4657 -1497 1881 63 44 56 chrX 47592526 47592796 -129381344 + AluY SINE Alu 42 308 -3 5841 147 11 21 chrX 47592796 47594305 -129379835 + L1PB3 LINE L1 4657 6145 -9 546 99 0 0 chrX 47594305 47594396 -129379744 + (TA)n Simple_repeat Simple_repeat 1 91 0 2549 186 18 75 chrX 47594399 47595457 -129378683 + L1MA9 LINE L1 5351 6312 0 3925 241 41 16 chrX 47595461 47596998 -129377142 + L1M4c LINE L1 2163 3736 -2646 261 302 0 12 chrX 47597042 47597128 -129377012 + L1M3c LINE L1 148 232 -5909 289 327 19 37 chrX 47597377 47597539 -129376601 + L1M3c LINE L1 477 635 -5496 801 233 164 9 chrX 47597567 47597799 -129376341 + MLT1C LTR MaLR 192 459 -8 751 199 0 0 chrX 47597847 47597993 -129376147 + L1M4c LINE L1 4711 4856 -1526 4774 104 0 0 chrX 47597997 47598621 -129375519 - L1PA16 LINE L1 -17 6149 5526 1846 120 40 4 chrX 47598739 47599042 -129375098 - AluSx SINE Alu 0 313 1 425 113 0 12 chrX 47599256 47599361 -129374779 - L1PB1 LINE L1 0 6151 6071 43250 54 5 8 chrX 47599398 47603188 -129370952 - L1PA4 LINE L1 -1 6154 2353 9960 31 0 176 chrX 47603188 47604811 -129369329 - SVA Other Other 0 1386 50 43250 54 5 8 chrX 47604811 47604822 -129369318 - L1PA4 LINE L1 -3802 2353 2343 612 0 0 0 chrX 47604822 47604890 -129369250 + (GGGAGA)n Simple_repeat Simple_repeat 6 73 0 43250 54 5 8 chrX 47604890 47607265 -129366875 - L1PA4 LINE L1 -3812 2343 3 2842 94 97 18 chrX 47607265 47607520 -129366620 - L1PB1 LINE L1 -70 6081 5847 1771 173 0 26 chrX 47607520 47607832 -129366308 - AluSx SINE Alu -8 304 1 2842 94 97 18 chrX 47607832 47607866 -129366274 - L1PB1 LINE L1 -304 5847 5817 405 0 0 0 chrX 47607866 47607911 -129366229 + (TA)n Simple_repeat Simple_repeat 2 46 0 2842 94 97 18 chrX 47607911 47608065 -129366075 - L1PB1 LINE L1 -334 5817 5602 4010 175 5 10 chrX 47608071 47608391 -129365749 - L1 LINE L1 -1310 4836 4516 342 0 0 0 chrX 47608391 47608429 -129365711 + (TG)n Simple_repeat Simple_repeat 2 39 0 2140 117 0 0 chrX 47608431 47608712 -129365428 - AluSx SINE Alu -31 281 1 4010 175 5 10 chrX 47608712 47609169 -129364971 - L1 LINE L1 -1631 4515 4060 397 274 0 40 chrX 47609505 47609629 -129364511 + L1M3c LINE L1 1814 1932 -5105 691 209 16 8 chrX 47609632 47609761 -129364379 + AluJb SINE Alu 2 131 -181 565 271 42 1 chrX 47609782 47610010 -129364130 + L1M3c LINE L1 1937 2191 -4846 1771 151 0 8 chrX 47610021 47610286 -129363854 + AluSx SINE Alu 1 263 -49 1053 167 0 4 chrX 47610320 47610576 -129363564 + (TA)n Simple_repeat Simple_repeat 1 256 0 234 179 45 0 chrX 47610577 47610644 -129363496 - L1MCa LINE L1 -4362 2064 1995 294 179 0 0 chrX 47610648 47610704 -129363436 + (TA)n Simple_repeat Simple_repeat 2 57 0 229 188 29 14 chrX 47610705 47610774 -129363366 - L1MCa LINE L1 -4362 2064 1995 1041 145 0 0 chrX 47610779 47610958 -129363182 + (TA)n Simple_repeat Simple_repeat 2 180 0 2135 122 3 0 chrX 47610958 47611246 -129362894 - AluSg SINE Alu -21 289 1 2573 139 3 10 chrX 47611258 47611633 -129362507 - L1PB3 LINE L1 -1 6153 5780 2004 146 0 7 chrX 47611633 47611934 -129362206 - AluSx SINE Alu -13 299 1 2573 139 3 10 chrX 47611934 47611946 -129362194 - L1PB3 LINE L1 -374 5780 5769 3253 154 45 44 chrX 47611946 47612192 -129361948 - L1PA8A LINE L1 -3 6128 5884 1043 63 0 53 chrX 47612192 47612382 -129361758 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3253 154 45 44 chrX 47612382 47612434 -129361706 - L1PA8A LINE L1 -247 5884 5834 2124 123 17 3 chrX 47612434 47612736 -129361404 - AluSx SINE Alu -6 306 1 3253 154 45 44 chrX 47612736 47613026 -129361114 - L1PA8A LINE L1 -297 5834 5546 2367 78 0 10 chrX 47613026 47613320 -129360820 - AluY SINE Alu -20 291 1 3253 154 45 44 chrX 47613320 47613932 -129360208 - L1PA8A LINE L1 -585 5546 4891 920 229 41 60 chrX 47613939 47614339 -129359801 + L1M4c LINE L1 1075 1787 -4516 * 7184 210 40 26 chrX 47614328 47616493 -129357647 + L1M2c LINE L1 16 2571 -4994 1213 78 0 0 chrX 47616492 47616646 -129357494 - THE1B-int LTR MaLR -1426 154 1 * 2155 150 72 20 chrX 47616646 47616992 -129357148 - THE1B LTR MaLR 0 364 1 1994 182 16 3 chrX 47616994 47617415 -129356725 + L1MA3 LINE L1 3288 3754 -3891 3576 94 43 39 chrX 47617421 47617930 -129356210 + MER9 LTR ERVK 1 511 0 21538 67 7 7 chrX 47617930 47618691 -129355449 + HERVK9 LTR ERVK 1 761 -5155 200 211 0 88 chrX 47618691 47618748 -129355392 + MER5B DNA MER1_type 55 106 -72 21538 67 7 7 chrX 47618748 47620717 -129353423 + HERVK9 LTR ERVK 761 2786 -3130 3367 36 0 0 chrX 47620717 47621102 -129353038 + HERVK9 LTR ERVK 3711 4095 -1821 302 56 0 0 chrX 47621119 47621155 -129352985 + HERVK9 LTR ERVK 3906 3941 -1975 5858 69 14 2 chrX 47621187 47622329 -129351811 + HERVK9 LTR ERVK 4745 5916 0 3498 117 49 4 chrX 47622329 47622818 -129351322 + MER9 LTR ERVK 1 511 0 4832 167 34 3 chrX 47622819 47623856 -129350284 + L1MA3 LINE L1 5834 6907 -743 2677 138 9 14 chrX 47623856 47624023 -129350117 + L1MA3 LINE L1 7301 7467 -257 2000 126 4 0 chrX 47624023 47624333 -129349807 + AluSx SINE Alu 5 315 0 2677 138 9 14 chrX 47624333 47624579 -129349561 + L1MA3 LINE L1 7467 7724 0 264 249 8 0 chrX 47624594 47624664 -129349476 + L1M2c LINE L1 2646 3101 -4465 2585 230 28 16 chrX 47624664 47624940 -129349200 + MLT2B3 LTR ERVL 3 274 -280 2089 148 132 23 chrX 47624940 47625326 -129348814 + MSTA LTR MaLR 1 428 0 2585 230 28 16 chrX 47625326 47625555 -129348585 + MLT2B3 LTR ERVL 274 517 -37 564 42 0 0 chrX 47625555 47625626 -129348514 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 2585 230 28 16 chrX 47625626 47625663 -129348477 + MLT2B3 LTR ERVL 517 552 -2 24931 195 24 12 chrX 47625666 47630247 -129343893 + ERVL-B3 LTR ERVL 4 4642 -1122 22887 196 15 17 chrX 47630249 47630489 -129343651 + L1P4 LINE L1 1 240 -7372 3903 34 0 0 chrX 47630489 47630926 -129343214 + L1PA5 LINE L1 5717 6153 -1 22887 196 15 17 chrX 47630926 47633642 -129340498 + L1P4 LINE L1 240 2962 -4650 1808 177 0 7 chrX 47633642 47633941 -129340199 + AluSx SINE Alu 1 297 -15 22887 196 15 17 chrX 47633941 47637129 -129337011 + L1P4 LINE L1 2962 6917 -695 1437 129 17 4 chrX 47637122 47637354 -129336786 + L1P LINE L1 3772 4006 -2140 * 7079 60 13 25 chrX 47637354 47638040 -129336100 + L1PA7 LINE L1 5089 5762 -392 2422 88 3 0 chrX 47638040 47638345 -129335795 + AluY SINE Alu 1 306 -5 7079 60 13 25 chrX 47638345 47638732 -129335408 + L1PA7 LINE L1 5762 6152 -2 553 224 48 24 chrX 47638740 47638905 -129335235 - Ricksha DNA DNA -1628 418 250 5162 160 21 19 chrX 47638908 47639304 -129334836 - ERVL LTR ERVL -818 4946 4552 2364 49 45 0 chrX 47639304 47639591 -129334549 - AluY SINE Alu -11 300 1 5162 160 21 19 chrX 47639591 47640052 -129334088 - ERVL LTR ERVL -1212 4552 4087 2904 141 2 2 chrX 47640053 47640486 -129333654 - ERVL LTR ERVL -2886 2878 2446 3486 235 79 28 chrX 47640486 47641612 -129332528 - L1M3c LINE L1 -4838 2199 1016 731 209 162 0 chrX 47641612 47641803 -129332337 - L1M3c LINE L1 -6701 329 108 5843 174 59 1 chrX 47641873 47642873 -129331267 - ERVL LTR ERVL -3304 2460 1403 22 0 0 0 chrX 47643151 47643173 -129330967 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chrX 47643847 47643896 -129330244 + AT_rich Low_complexity Low_complexity 1 49 0 228 286 167 0 chrX 47644055 47644139 -129330001 + MER5A DNA MER1_type 9 106 -83 274 350 14 21 chrX 47644201 47644341 -129329799 + MER5A DNA MER1_type 7 145 -44 744 195 38 65 chrX 47644360 47644469 -129329671 - MER5A DNA MER1_type -9 180 77 2408 46 10 30 chrX 47644469 47644771 -129329369 - AluY SINE Alu -15 296 1 744 195 38 65 chrX 47644771 47644846 -129329294 - MER5A DNA MER1_type -112 77 1 5364 135 53 9 chrX 47645533 47646398 -129327742 + MER4D LTR ERV1 1 903 0 238 118 0 0 chrX 47646403 47646437 -129327703 + L1MA2 LINE L1 6254 6287 -17 268 224 29 69 chrX 47646437 47646525 -129327615 - MIR SINE MIR -110 98 4 1165 221 36 54 chrX 47646802 47647191 -129326949 + L1MB5 LINE L1 3410 3791 -2355 * 3897 186 68 39 chrX 47647182 47648410 -129325730 + L1MB5 LINE L1 4334 5524 -650 245 29 29 0 chrX 47648410 47648444 -129325696 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3897 186 68 39 chrX 47648444 47648503 -129325637 + L1MB5 LINE L1 5524 5580 -594 1795 169 0 36 chrX 47648503 47648804 -129325336 + AluJb SINE Alu 1 290 -22 3897 186 68 39 chrX 47648804 47649286 -129324854 + L1MB5 LINE L1 5580 6166 -8 21 71 0 0 chrX 47649289 47649331 -129324809 + AT_rich Low_complexity Low_complexity 1 42 0 266 0 29 0 chrX 47649333 47649367 -129324773 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6546 160 41 13 chrX 47649367 47649510 -129324630 - L1MA2 LINE L1 -4 7719 7582 306 0 0 0 chrX 47649510 47649544 -129324596 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2159 107 0 0 chrX 47649544 47649825 -129324315 - AluSg SINE Alu -29 281 1 6546 160 41 13 chrX 47649825 47651672 -129322468 - L1MA2 LINE L1 -141 7582 5657 378 0 0 0 chrX 47651672 47651714 -129322426 + (TG)n Simple_repeat Simple_repeat 1 42 0 6546 160 41 13 chrX 47651714 47651984 -129322156 - L1MA2 LINE L1 -2066 5657 5396 218 204 0 74 chrX 47654099 47654207 -129319933 + CT-rich Low_complexity Low_complexity 2 101 0 313 248 164 65 chrX 47654474 47654736 -129319404 + L1M2 LINE L1 679 966 -5883 17911 188 51 13 chrX 47654743 47655625 -129318515 - L1MA2 LINE L1 -2136 5429 4582 2093 136 0 0 chrX 47655625 47655933 -129318207 - AluSx SINE Alu -4 308 1 17911 188 51 13 chrX 47655933 47660265 -129313875 - L1MA2 LINE L1 -2983 4582 22 222 333 15 0 chrX 47660877 47660943 -129313197 + L3 LINE CR1 1508 1574 -3 6803 169 22 14 chrX 47661104 47662484 -129311656 - L1MA2 LINE L1 -158 7565 6154 1673 157 135 70 chrX 47662484 47662885 -129311255 - MSTA LTR MaLR -1 427 1 6803 169 22 14 chrX 47662885 47663720 -129310420 - L1MA2 LINE L1 -1569 6154 5328 * 23949 110 11 9 chrX 47663708 47667623 -129306517 + L1PA8 LINE L1 1783 5706 -448 2763 71 87 5 chrX 47667624 47667991 -129306149 + L1PA8 LINE L1 5776 6172 0 9208 77 7 102 chrX 47668002 47669506 -129304634 - SVA Other Other -1 1385 25 234 0 0 0 chrX 47669523 47669549 -129304591 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 324 104 0 0 chrX 47669549 47669597 -129304543 - L1MA2 LINE L1 -2207 5358 5311 1557 251 41 25 chrX 47670341 47670851 -129303289 - L1MA2 LINE L1 -3304 4261 3744 5273 58 5 5 chrX 47670855 47671489 -129302651 - L1PA5 LINE L1 -4 6150 5517 38352 68 5 0 chrX 47671489 47676410 -129297730 + L1P LINE L1 1 4941 -1205 765 152 15 112 chrX 47676414 47676666 -129297474 - L1MA2 LINE L1 -3816 3749 3523 6662 44 25 1 chrX 47676745 47682674 -129291466 - L1PA3 LINE L1 0 6155 1 3620 154 46 19 chrX 47682674 47683157 -129290983 - L1MA2 LINE L1 -4026 3539 3028 2153 112 3 3 chrX 47683157 47683453 -129290687 - AluY SINE Alu -15 296 1 3620 154 46 19 chrX 47683453 47683715 -129290425 - L1MA2 LINE L1 -4537 3028 2774 1142 194 61 130 chrX 47683715 47684092 -129290048 + MLT1D LTR MaLR 149 499 -6 268 315 0 0 chrX 47684171 47684244 -129289896 - L3 LINE CR1 -70 1507 1435 481 273 192 7 chrX 47684503 47684654 -129289486 - MIR SINE MIR -53 209 32 419 261 159 15 chrX 47684669 47684864 -129289276 - MIR SINE MIR -6 256 34 1868 169 0 0 chrX 47684924 47685214 -129288926 + AluJb SINE Alu 1 290 -22 198 0 0 0 chrX 47685214 47685236 -129288904 + (TA)n Simple_repeat Simple_repeat 2 23 0 312 83 0 0 chrX 47685625 47685673 -129288467 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 1918 153 0 7 chrX 47686319 47686619 -129287521 + AluJb SINE Alu 1 298 -14 1932 101 91 4 chrX 47686624 47686900 -129287240 + AluSx SINE Alu 1 300 -12 433 248 0 0 chrX 47687616 47687745 -129286395 + L1ME4a LINE L1 5982 6110 -11 1299 155 42 0 chrX 47687760 47687953 -129286187 - AluJo SINE Alu -26 286 86 2164 109 0 0 chrX 47688000 47688330 -129285810 + AluSg SINE Alu 1 330 0 881 148 0 15 chrX 47689371 47689506 -129284634 - FLAM_C SINE Alu 0 133 1 331 261 164 17 chrX 47689546 47689784 -129284356 - L1ME4a LINE L1 -73 6048 5776 2252 121 23 0 chrX 47690173 47690478 -129283662 + AluSx SINE Alu 1 312 0 237 65 0 0 chrX 47690489 47690520 -129283620 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 785 199 55 116 chrX 47691197 47691408 -129282732 - ORSL DNA AcHobo 0 275 85 1959 162 0 3 chrX 47691408 47691704 -129282436 - AluJb SINE Alu -17 295 1 785 199 55 116 chrX 47691704 47691784 -129282356 - ORSL DNA AcHobo -190 85 2 392 352 16 8 chrX 47692254 47692382 -129281758 - MIR3 SINE MIR -38 170 42 313 357 116 49 chrX 47692788 47693158 -129280982 - L2 LINE L2 -9 3263 2869 217 391 11 0 chrX 47693235 47693322 -129280818 - L2 LINE L2 -644 2670 2583 2184 112 0 3 chrX 47693918 47694228 -129279912 - AluSx SINE Alu 0 309 1 23 0 0 0 chrX 47694243 47694266 -129279874 + AT_rich Low_complexity Low_complexity 1 23 0 713 249 20 30 chrX 47694448 47694649 -129279491 - MIR SINE MIR -56 206 8 2022 133 3 32 chrX 47694739 47695054 -129279086 - AluJb SINE Alu -6 306 1 589 275 28 47 chrX 47696800 47697011 -129277129 - MIR SINE MIR -52 210 4 2353 116 0 0 chrX 47697106 47697416 -129276724 - AluSx SINE Alu -2 310 1 201 220 0 34 chrX 47700173 47700232 -129273908 + T-rich Low_complexity Low_complexity 3 59 0 222 37 0 0 chrX 47700443 47700470 -129273670 + (TC)n Simple_repeat Simple_repeat 2 28 0 2303 110 7 0 chrX 47701425 47701734 -129272406 + AluSx SINE Alu 1 311 -1 467 241 22 30 chrX 47702153 47702308 -129271832 - MIR3 SINE MIR -41 167 15 1850 174 7 0 chrX 47703312 47703616 -129270524 + AluJo SINE Alu 1 306 -6 274 272 204 20 chrX 47704000 47704147 -129269993 - MIR SINE MIR -51 211 38 748 224 39 6 chrX 47704165 47704321 -129269819 - MER5A DNA MER1_type 0 189 29 216 286 0 92 chrX 47704342 47704440 -129269700 + MIR3 SINE MIR 71 159 -49 21 36 0 0 chrX 47704457 47704485 -129269655 + AT_rich Low_complexity Low_complexity 1 28 0 2388 81 19 7 chrX 47704505 47704813 -129269327 + AluSx SINE Alu 1 312 0 234 208 0 0 chrX 47704974 47705022 -129269118 + MIR3 SINE MIR 151 198 -10 180 152 0 0 chrX 47706342 47706375 -129267765 + (CTG)n Simple_repeat Simple_repeat 3 35 0 527 203 0 91 chrX 47707025 47707168 -129266972 - MIR3 SINE MIR -25 183 54 361 271 10 21 chrX 47707849 47707945 -129266195 + MIR3 SINE MIR 71 165 -43 297 0 0 0 chrX 47708034 47708067 -129266073 + (CA)n Simple_repeat Simple_repeat 1 33 0 387 0 0 0 chrX 47710136 47710179 -129263961 + (CA)n Simple_repeat Simple_repeat 2 44 0 2689 48 0 13 chrX 47710735 47711050 -129263090 - AluY SINE Alu 0 311 1 180 243 0 0 chrX 47711602 47711676 -129262464 + CT-rich Low_complexity Low_complexity 2 75 0 687 257 0 7 chrX 47712146 47712298 -129261842 + MIR SINE MIR 110 260 -2 270 320 46 7 chrX 47712842 47712995 -129261145 - L2 LINE L2 -605 2709 2551 191 219 0 0 chrX 47713176 47713217 -129260923 + L2 LINE L2 3209 3249 -23 463 302 24 52 chrX 47713721 47713933 -129260207 + MIR SINE MIR 29 234 -28 310 214 190 38 chrX 47714007 47714154 -129259986 + MIR3 SINE MIR 1 160 -48 200 267 22 0 chrX 47714317 47714362 -129259778 - L3b LINE CR1 -16 1567 1522 252 244 134 50 chrX 47714819 47714938 -129259202 - L2 LINE L2 -8 3264 3136 429 295 48 48 chrX 47715010 47715220 -129258920 - L2 LINE L2 -888 2426 2217 1026 302 187 32 chrX 47715249 47716487 -129257653 - L2 LINE L2 -1321 1993 564 230 211 44 89 chrX 47716713 47716803 -129257337 + MIR SINE MIR 20 105 -103 * 306 291 12 0 chrX 47716758 47716844 -129257296 - MIR SINE MIR 0 262 176 366 227 33 107 chrX 47716844 47716994 -129257146 + MIR3 SINE MIR 56 194 -14 315 250 0 0 chrX 47717799 47717875 -129256265 + GA-rich Low_complexity Low_complexity 1 76 0 770 227 7 0 chrX 47718025 47718175 -129255965 + MIR3 SINE MIR 44 194 -14 219 114 0 0 chrX 47718233 47718268 -129255872 + (CACCC)n Simple_repeat Simple_repeat 3 37 0 883 97 0 41 chrX 47719154 47719299 -129254841 - MER85 DNA T2_type 0 139 1 2234 166 63 12 chrX 47719371 47719782 -129254358 + MSTB1 LTR MaLR 1 432 0 2414 93 6 3 chrX 47720429 47720740 -129253400 + AluSx SINE Alu 1 312 0 1764 202 0 3 chrX 47720753 47721050 -129253090 + AluJb SINE Alu 1 296 -16 2187 141 0 0 chrX 47721050 47721362 -129252778 + AluSx SINE Alu 1 312 0 200 188 0 0 chrX 47722057 47722089 -129252051 + polypyrimidine Low_complexity Low_complexity 1 32 0 530 319 0 7 chrX 47722212 47722350 -129251790 + MIR3 SINE MIR 43 179 -29 229 189 0 0 chrX 47722905 47722942 -129251198 - tRNA-Val-GTG tRNA tRNA -39 37 1 232 304 98 22 chrX 47723663 47723755 -129250385 + MIR3 SINE MIR 71 169 -39 1833 157 14 7 chrX 47723896 47724026 -129250114 + AluSx SINE Alu 1 129 -179 2339 98 0 23 chrX 47724026 47724332 -129249808 + AluSg SINE Alu 1 299 -11 1833 157 14 7 chrX 47724332 47724507 -129249633 + AluSx SINE Alu 129 308 0 910 162 137 25 chrX 47724552 47724756 -129249384 - MER96B DNA MER1_type? -190 227 1 296 261 163 46 chrX 47724967 47725120 -129249020 - MIR3 SINE MIR -1 207 37 1889 126 94 7 chrX 47725165 47725451 -129248689 + AluSx SINE Alu 1 311 -1 262 231 0 0 chrX 47725743 47725795 -129248345 + L2 LINE L2 3138 3189 -83 2119 116 0 0 chrX 47728789 47729115 -129245025 + AluSx SINE Alu 1 326 0 357 239 231 8 chrX 47729117 47729234 -129244906 + MIR3 SINE MIR 38 180 -28 2329 112 0 3 chrX 47729614 47729927 -129244213 - AluSx SINE Alu 0 312 1 1621 232 47 55 chrX 47730372 47730881 -129243259 - MLT1D LTR MaLR 0 505 1 321 319 137 0 chrX 47731158 47731340 -129242800 + L2 LINE L2 2214 2420 -894 563 216 16 172 chrX 47731371 47731558 -129242582 + MIR SINE MIR 33 173 -89 1536 107 27 163 chrX 47731558 47731896 -129242244 + AluSg1 SINE Alu 1 292 -17 563 216 16 172 chrX 47731896 47731958 -129242182 + MIR SINE MIR 173 243 -19 492 18 0 0 chrX 47731970 47732027 -129242113 + (TA)n Simple_repeat Simple_repeat 2 58 0 2245 101 20 0 chrX 47732027 47732324 -129241816 - AluSx SINE Alu -9 303 1 4265 56 0 67 chrX 47732346 47732720 -129241420 + MER41A LTR ERV1 1 399 -155 2114 134 10 0 chrX 47732720 47732849 -129241291 + AluSx SINE Alu 1 127 -185 239 54 27 0 chrX 47732849 47732886 -129241254 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2114 134 10 0 chrX 47732886 47733063 -129241077 + AluSx SINE Alu 127 310 -2 4265 56 0 67 chrX 47733063 47733159 -129240981 + MER41A LTR ERV1 399 425 -129 2404 91 3 3 chrX 47733159 47733468 -129240672 - AluSc SINE Alu 0 309 1 4265 56 0 67 chrX 47733468 47733590 -129240550 + MER41A LTR ERV1 425 554 0 295 318 45 9 chrX 47733789 47733899 -129240241 + L2 LINE L2 2543 2656 -658 2291 112 0 0 chrX 47734012 47734308 -129239832 + AluSx SINE Alu 1 296 -16 1342 182 36 91 chrX 47734312 47734642 -129239498 - AluJo SINE Alu 0 312 1 845 200 5 38 chrX 47734642 47734707 -129239433 - AluJo/FRAM SINE Alu -8 304 238 3643 140 36 68 chrX 47734707 47735107 -129239033 + LTR8A LTR ERV1 1 369 -358 1761 174 3 3 chrX 47735107 47735451 -129238689 - AluJb SINE Alu 0 344 1 3643 140 36 68 chrX 47735451 47735799 -129238341 + LTR8A LTR ERV1 369 727 0 845 200 5 38 chrX 47735799 47735906 -129238234 - AluJo/FRAM SINE Alu -74 238 134 1905 107 3 27 chrX 47735925 47736279 -129237861 + MER4A LTR ERV1 261 664 0 1845 121 3 83 chrX 47736305 47736376 -129237764 - LTR8 LTR ERV1 -375 316 241 2009 118 7 4 chrX 47736376 47736732 -129237408 - AluSx SINE Alu 0 357 1 1845 121 3 83 chrX 47736732 47736997 -129237143 - LTR8 LTR ERV1 -450 241 6 713 186 8 0 chrX 47736997 47737115 -129237025 - FLAM_C SINE Alu -23 120 2 1251 134 0 0 chrX 47737269 47737441 -129236699 - AluSg/x SINE Alu -7 303 132 2132 109 0 35 chrX 47737441 47737752 -129236388 - AluSq SINE Alu -13 300 1 435 280 85 0 chrX 47737786 47737924 -129236216 - MIR SINE MIR -65 143 3 287 363 0 0 chrX 47738089 47738213 -129235927 + GA-rich Low_complexity Low_complexity 4 127 0 308 312 110 23 chrX 47738290 47738508 -129235632 + MIR SINE MIR 11 247 -15 252 303 79 0 chrX 47739544 47739620 -129234520 - L2 LINE L2 -23 3249 3168 192 278 21 52 chrX 47739649 47739746 -129234394 + MIR SINE MIR 65 158 -104 897 201 98 130 chrX 47739814 47740192 -129233948 - MLT1A1 LTR MaLR -1 364 30 1839 161 10 16 chrX 47740193 47740497 -129233643 - AluJo SINE Alu -10 302 1 185 292 0 0 chrX 47741062 47741110 -129233030 - MIR SINE MIR -11 251 204 1334 149 0 118 chrX 47741297 47741536 -129232604 - MLT1B LTR MaLR 0 390 125 2423 81 7 3 chrX 47741536 47741834 -129232306 - AluSc SINE Alu -10 299 1 2501 77 0 3 chrX 47741843 47742155 -129231985 - AluY SINE Alu 0 311 1 1334 149 0 118 chrX 47742155 47742220 -129231920 - MLT1B LTR MaLR -206 184 113 2299 93 30 0 chrX 47742473 47742774 -129231366 + AluSg SINE Alu 1 310 0 2256 79 4 14 chrX 47745864 47746144 -129227996 - AluSg SINE Alu -33 277 1 768 115 9 0 chrX 47746150 47746263 -129227877 - MLT1B LTR MaLR -269 121 8 2433 101 31 14 chrX 47746831 47747112 -129227028 - THE1B LTR MaLR 0 364 74 4986 42 0 3 chrX 47747112 47747705 -129226435 + LTR10C LTR ERV1 1 591 0 2433 101 31 14 chrX 47747705 47747781 -129226359 - THE1B LTR MaLR -290 74 1 2106 103 11 0 chrX 47748276 47748549 -129225591 - AluSq SINE Alu -4 309 34 453 250 119 28 chrX 47749063 47749250 -129224890 + MIR3 SINE MIR 2 208 0 4953 167 20 16 chrX 47749422 47749782 -129224358 - L1P LINE L1 -3062 3084 2727 2388 98 0 0 chrX 47749782 47750079 -129224061 - AluSq SINE Alu -16 297 1 4953 167 20 16 chrX 47750079 47750740 -129223400 - L1P LINE L1 -3419 2727 2059 2173 107 14 0 chrX 47750915 47751206 -129222934 - AluSg SINE Alu -15 295 1 24 53 0 0 chrX 47751429 47751467 -129222673 + AT_rich Low_complexity Low_complexity 1 38 0 1129 260 79 59 chrX 47751599 47751942 -129222198 - L1MC4a LINE L1 -1872 5936 5574 2172 120 0 10 chrX 47751942 47752241 -129221899 - AluSx SINE Alu -15 297 2 1129 260 79 59 chrX 47752241 47752504 -129221636 - L1MC4a LINE L1 -2234 5574 5318 453 320 88 29 chrX 47752509 47752815 -129221325 - L1MC4a LINE L1 -836 5310 4987 2267 108 0 0 chrX 47752981 47753276 -129220864 - AluSx SINE Alu -17 295 1 450 0 0 0 chrX 47753307 47753357 -129220783 + (TA)n Simple_repeat Simple_repeat 2 51 0 1964 155 0 34 chrX 47753465 47753788 -129220352 + AluJo SINE Alu 1 312 0 234 0 0 0 chrX 47754054 47754084 -129220056 - L1MA4A LINE L1 -174 6129 6100 2230 109 3 7 chrX 47754170 47754464 -129219676 + AluSq SINE Alu 3 295 -18 2116 120 0 0 chrX 47754481 47754813 -129219327 + AluSq SINE Alu 3 334 0 180 365 7 68 chrX 47754981 47755129 -129219011 + L3b LINE CR1 1250 1388 -195 658 202 37 0 chrX 47755150 47755259 -129218881 + FLAM_C SINE Alu 6 118 -25 2265 89 4 0 chrX 47755282 47755601 -129218539 + AluSp SINE Alu 2 321 0 2138 112 3 7 chrX 47755884 47756198 -129217942 - AluSx SINE Alu 0 313 1 12921 85 4 17 chrX 47756225 47757028 -129217112 - L1PA7 LINE L1 0 6469 5657 2093 117 0 7 chrX 47757028 47757343 -129216797 + AluSg SINE Alu 2 314 0 12921 85 4 17 chrX 47757343 47759154 -129214986 - L1PA7 LINE L1 -812 5657 3878 15045 112 11 39 chrX 47759154 47760849 -129213291 - L1PA7 LINE L1 -2881 3580 1840 3736 113 0 4 chrX 47760849 47761362 -129212778 - MER9 LTR ERVK 0 511 1 15045 112 11 39 chrX 47761362 47763278 -129210862 - L1PA7 LINE L1 -4621 1840 8 300 336 74 13 chrX 47763314 47763463 -129210677 - MIR SINE MIR -95 167 10 247 288 62 0 chrX 47764775 47764855 -129209285 + MIR3 SINE MIR 79 163 -45 426 308 34 10 chrX 47765650 47765798 -129208342 + MIR3 SINE MIR 20 161 -51 609 197 45 90 chrX 47765813 47765991 -129208149 + MIR3 SINE MIR 38 207 -1 800 191 70 0 chrX 47766436 47766593 -129207547 - MER58B DNA MER1_type 0 341 174 1027 143 69 23 chrX 47766596 47766771 -129207369 + AluSg/x SINE Alu 130 312 0 200 324 141 42 chrX 47766857 47766999 -129207141 + L2 LINE L2 3109 3264 -8 384 200 20 20 chrX 47767106 47767206 -129206934 + L1MC5 LINE L1 7826 7925 -36 2273 159 87 3 chrX 47768419 47768808 -129205332 - MSTB LTR MaLR -4 422 1 246 255 120 53 chrX 47769536 47769684 -129204456 + MIR SINE MIR 30 183 -65 2208 84 52 42 chrX 47770077 47770386 -129203754 - AluSx SINE Alu 0 312 1 1979 136 0 14 chrX 47771214 47771500 -129202640 + AluSx SINE Alu 1 282 -30 210 37 0 0 chrX 47771503 47771530 -129202610 + (CAA)n Simple_repeat Simple_repeat 2 28 0 249 179 0 119 chrX 47771737 47771821 -129202319 + CT-rich Low_complexity Low_complexity 3 76 0 247 246 15 15 chrX 47772106 47772171 -129201969 + GA-rich Low_complexity Low_complexity 1 65 0 2240 134 0 0 chrX 47772753 47773059 -129201081 - AluSx SINE Alu -4 308 3 292 167 0 0 chrX 47773784 47773832 -129200308 + MIR SINE MIR 102 149 -113 749 135 54 0 chrX 47773836 47773947 -129200193 + FLAM_C SINE Alu 2 118 -15 252 100 0 0 chrX 47773949 47773989 -129200151 + (GA)n Simple_repeat Simple_repeat 2 41 0 406 327 13 19 chrX 47775709 47775865 -129198275 + MIR3 SINE MIR 51 205 -3 224 314 58 23 chrX 47776081 47776167 -129197973 - L2 LINE L2 0 3272 3184 1695 137 114 7 chrX 47776908 47777179 -129196961 - AluSg1 SINE Alu -9 300 1 5581 98 43 22 chrX 47777181 47777525 -129196615 - L1PA15 LINE L1 -10 6155 5820 1913 157 0 0 chrX 47777525 47777812 -129196328 - AluSx SINE Alu -17 295 9 5581 98 43 22 chrX 47777812 47777862 -129196278 - L1PA15 LINE L1 -345 5820 5773 1975 146 3 0 chrX 47777862 47778175 -129195965 - AluJb SINE Alu 0 312 1 5581 98 43 22 chrX 47778175 47778386 -129195754 - L1PA15 LINE L1 -392 5773 5568 1961 152 13 19 chrX 47778386 47778695 -129195445 - AluJo SINE Alu -5 307 1 5581 98 43 22 chrX 47778695 47778937 -129195203 - L1PA15 LINE L1 -597 5568 5326 2221 93 7 13 chrX 47778937 47779270 -129194870 + AluSq SINE Alu 1 331 0 5581 98 43 22 chrX 47779270 47779481 -129194659 - L1PA15 LINE L1 -839 5326 5121 209 136 68 0 chrX 47779485 47779529 -129194611 + T-rich Low_complexity Low_complexity 2 48 0 1705 102 0 9 chrX 47779553 47779778 -129194362 - AluSx SINE Alu -89 223 1 1950 131 4 0 chrX 47779778 47780053 -129194087 - AluSx SINE Alu -16 296 21 209 33 33 0 chrX 47782316 47782346 -129191794 + (TC)n Simple_repeat Simple_repeat 1 31 0 201 147 0 0 chrX 47782444 47782478 -129191662 + (CTG)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chrX 47782697 47782717 -129191423 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 1669 116 42 4 chrX 47783354 47783595 -129190545 - AluSq SINE Alu -2 311 62 2307 100 10 0 chrX 47785692 47785993 -129188147 - AluSg SINE Alu -6 304 1 2221 109 0 0 chrX 47786258 47786543 -129187597 + AluSx SINE Alu 1 285 -27 2380 102 0 0 chrX 47787037 47787341 -129186799 - AluSx SINE Alu -7 305 2 409 277 0 18 chrX 47787663 47787775 -129186365 - MIR3 SINE MIR -39 169 60 500 285 21 21 chrX 47788089 47788233 -129185907 - MIR3 SINE MIR -13 195 52 508 302 22 28 chrX 47789206 47789385 -129184755 - MIR3 SINE MIR -1 207 30 583 233 65 0 chrX 47789410 47789555 -129184585 - MIR3 SINE MIR -47 161 7 220 360 79 0 chrX 47789589 47789678 -129184462 - MIR SINE MIR -68 140 45 186 103 0 0 chrX 47790088 47790117 -129184023 + (T)n Simple_repeat Simple_repeat 1 29 0 1310 185 45 58 chrX 47790535 47790848 -129183292 - AluJb SINE Alu -3 309 1 1846 176 0 3 chrX 47790851 47791147 -129182993 - AluJo SINE Alu -17 295 1 405 297 27 0 chrX 47791203 47791314 -129182826 + MIR SINE MIR 31 144 -64 307 275 20 7 chrX 47791655 47791957 -129182183 + GA-rich Low_complexity Low_complexity 1 306 0 277 253 35 23 chrX 47792074 47792161 -129181979 - MIR SINE MIR -76 132 45 188 262 0 16 chrX 47792418 47792479 -129181661 - L2 LINE L2 -212 3060 3001 1917 136 3 30 chrX 47792504 47792806 -129181334 + AluSq SINE Alu 1 294 -19 2212 105 0 3 chrX 47792852 47793138 -129181002 + AluSc SINE Alu 1 285 -24 204 357 112 0 chrX 47794506 47794604 -129179536 - MIR SINE MIR -69 139 31 341 250 83 15 chrX 47794679 47794811 -129179329 + MIR3 SINE MIR 65 205 -3 257 314 38 19 chrX 47795826 47795931 -129178209 + L2 LINE L2 2555 2661 -653 458 275 74 70 chrX 47796064 47796322 -129177818 + MIR SINE MIR 4 262 0 245 209 181 67 chrX 47796408 47796513 -129177627 - MIR3 SINE MIR -25 183 67 2114 132 0 10 chrX 47796514 47796817 -129177323 + AluSq SINE Alu 4 303 -10 643 229 16 83 chrX 47796838 47797030 -129177110 - MIR SINE MIR -50 212 34 537 182 0 50 chrX 47797036 47797157 -129176983 + MER3 DNA MER1_type 90 204 -5 222 211 0 0 chrX 47797433 47797471 -129176669 + (CAT)n Simple_repeat Simple_repeat 2 39 0 827 193 105 48 chrX 47797488 47797716 -129176424 - MIR SINE MIR -17 245 5 387 288 21 47 chrX 47797731 47797967 -129176173 - L2 LINE L2 -926 2388 2159 1356 266 22 5 chrX 47798104 47798514 -129175626 + L2 LINE L2 2351 2767 -547 1280 318 39 8 chrX 47798692 47799302 -129174838 + L2 LINE L2 2347 2983 -330 1017 157 0 0 chrX 47799455 47799602 -129174538 - AluJb SINE Alu -25 287 141 2415 81 3 10 chrX 47799616 47799926 -129174214 - AluSg1 SINE Alu -1 308 1 1912 169 7 0 chrX 47799928 47800218 -129173922 - AluSx SINE Alu -18 294 3 259 235 82 12 chrX 47800237 47800322 -129173818 + L2 LINE L2 3190 3280 -33 438 205 94 17 chrX 47800337 47800454 -129173686 - L2 LINE L2 0 3313 3188 445 294 156 0 chrX 47800550 47800768 -129173372 - MIR SINE MIR -6 256 5 1624 164 30 0 chrX 47800904 47801203 -129172937 + L1MC1 LINE L1 6026 6333 0 290 85 0 0 chrX 47801205 47801252 -129172888 + L1M4b LINE L1 1514 1560 -5299 3042 249 69 49 chrX 47801252 47802227 -129171913 + L1M4 LINE L1 10 1003 -5539 3187 226 21 3 chrX 47802285 47803153 -129170987 + L1M4 LINE L1 3249 4131 -2513 3722 170 9 18 chrX 47803155 47804208 -129169932 - L1P5 LINE L1 -531 5620 4570 2202 144 0 0 chrX 47804208 47804520 -129169620 + AluSx SINE Alu 1 312 0 3346 138 27 13 chrX 47804546 47805198 -129168942 - MER83C-int LTR ERV1 -804 4076 2370 8063 168 43 4 chrX 47805198 47806569 -129167571 - MER83C-int LTR ERV1 -3399 1481 58 1278 199 4 0 chrX 47806681 47806907 -129167233 - MER83C LTR ERV1 0 373 147 837 191 0 86 chrX 47807152 47807277 -129166863 + L1MB7 LINE L1 5975 6076 -108 2166 136 7 0 chrX 47807277 47807587 -129166553 - AluSq SINE Alu -1 312 1 837 191 0 86 chrX 47807587 47807671 -129166469 + L1MB7 LINE L1 6076 6166 -18 253 183 17 104 chrX 47807683 47807798 -129166342 + L1M4b LINE L1 1543 1647 -5208 * 398 286 65 49 chrX 47807786 47808031 -129166109 + L1M4b LINE L1 2452 2700 -4438 321 258 149 55 chrX 47808084 47808161 -129165979 + L1M4b LINE L1 2567 2635 -4503 245 75 25 0 chrX 47808161 47808201 -129165939 + (TA)n Simple_repeat Simple_repeat 2 42 0 321 258 149 55 chrX 47808201 47808452 -129165688 + L1M4b LINE L1 2635 2926 -4212 1255 90 6 11 chrX 47809490 47809668 -129164472 + L1PB1 LINE L1 5973 6149 -2 605 185 104 38 chrX 47809777 47809988 -129164152 - L2 LINE L2 0 3313 3089 604 250 58 34 chrX 47809985 47810193 -129163947 + MIR SINE MIR 49 261 -1 * 1808 290 41 48 chrX 47810193 47810762 -129163378 - L2 LINE L2 -213 3100 2529 1921 147 0 0 chrX 47810762 47811041 -129163099 + AluSx SINE Alu 1 279 -33 207 0 0 0 chrX 47811047 47811070 -129163070 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1808 290 41 48 chrX 47811070 47811411 -129162729 - L2 LINE L2 -789 2524 2182 585 229 173 0 chrX 47811811 47811990 -129162150 + MIR SINE MIR 53 262 0 830 174 0 21 chrX 47812186 47812370 -129161770 - AluSg/x SINE Alu 0 319 139 384 75 0 0 chrX 47812370 47812423 -129161717 + MADE1 DNA Mariner 28 80 0 1523 166 126 7 chrX 47812423 47812701 -129161439 - MER21B LTR ERV1 -552 311 1 729 220 116 0 chrX 47812701 47812874 -129161266 - L1ME3A LINE L1 -340 5830 5638 1446 154 51 45 chrX 47812890 47813201 -129160939 - L1MD1 LINE L1 0 6242 5930 2009 181 108 26 chrX 47813241 47813277 -129160863 - MLT1D LTR MaLR -44 461 429 3832 136 34 7 chrX 47813277 47813895 -129160245 + MER41B LTR ERV1 1 635 0 2009 181 108 26 chrX 47813895 47814284 -129159856 - MLT1D LTR MaLR -76 429 1 180 0 0 0 chrX 47814322 47814342 -129159798 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 388 252 126 0 chrX 47814603 47814714 -129159426 - MER5B DNA MER1_type -53 125 1 1613 127 68 12 chrX 47814780 47815032 -129159108 + AluSx SINE Alu 14 279 -33 219 36 0 0 chrX 47815042 47815070 -129159070 + (GA)n Simple_repeat Simple_repeat 2 29 0 1214 39 13 0 chrX 47815070 47815225 -129158915 + (GGAA)n Simple_repeat Simple_repeat 4 160 0 262 95 24 0 chrX 47815320 47815362 -129158778 + MIR SINE MIR 112 154 -108 323 262 28 9 chrX 47815752 47815859 -129158281 + MIR SINE MIR 84 192 -70 23 0 0 0 chrX 47818323 47818346 -129155794 + AT_rich Low_complexity Low_complexity 1 23 0 261 281 18 0 chrX 47819014 47819103 -129155037 + MIR SINE MIR 93 147 -61 239 301 135 45 chrX 47820069 47820202 -129153938 + MIR SINE MIR 49 193 -69 278 248 9 35 chrX 47820965 47821078 -129153062 + CT-rich Low_complexity Low_complexity 1 110 0 2293 91 0 7 chrX 47821146 47821444 -129152696 + AluY SINE Alu 1 296 -15 214 281 87 1 chrX 47821606 47821697 -129152443 + MIR SINE MIR 47 143 -65 397 221 47 47 chrX 47821989 47822138 -129152002 + L2 LINE L2 3094 3242 -71 469 261 63 21 chrX 47822704 47822846 -129151294 - MIR3 SINE MIR -41 167 20 564 267 25 6 chrX 47823393 47823554 -129150586 + MIR SINE MIR 51 214 -48 1758 104 127 8 chrX 47823928 47824188 -129149952 + AluSg1 SINE Alu 1 291 -18 900 113 0 57 chrX 47824806 47824947 -129149193 - FLAM_C SINE Alu 0 133 1 1669 134 25 28 chrX 47825394 47825714 -129148426 - MER33 DNA MER1_type -2 322 4 191 36 36 0 chrX 47826509 47826537 -129147603 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2347 65 0 0 chrX 47829289 47829568 -129144572 + AluY SINE Alu 1 279 -32 205 51 51 0 chrX 47829569 47829608 -129144532 + A-rich Low_complexity Low_complexity 2 42 0 540 295 39 10 chrX 47830278 47830485 -129143655 - MIR SINE MIR -26 236 24 291 130 0 0 chrX 47831241 47831295 -129142845 + (CA)n Simple_repeat Simple_repeat 2 55 0 201 200 0 0 chrX 47831403 47831438 -129142702 - L2 LINE L2 -17 3296 3262 293 253 199 27 chrX 47831445 47831591 -129142549 - MIR SINE MIR -86 176 6 331 341 11 17 chrX 47831826 47832002 -129142138 + MIR3 SINE MIR 25 199 -9 222 118 0 0 chrX 47832447 47832481 -129141659 + (GA)n Simple_repeat Simple_repeat 1 34 0 533 167 33 120 chrX 47832580 47832730 -129141410 + MSTB2 LTR MaLR 1 137 -320 * 672 214 12 65 chrX 47832727 47832895 -129141245 + MSTB2 LTR MaLR 289 447 -10 2026 129 0 4 chrX 47832895 47833175 -129140965 + AluY SINE Alu 1 279 -32 250 44 22 22 chrX 47833177 47833222 -129140918 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2392 91 3 0 chrX 47833438 47833734 -129140406 + AluSq SINE Alu 1 297 -16 1619 132 48 15 chrX 47835163 47835436 -129138704 + AluJb SINE Alu 1 282 -30 342 0 0 0 chrX 47835439 47835477 -129138663 + (CA)n Simple_repeat Simple_repeat 2 39 0 1933 163 10 13 chrX 47835768 47836081 -129138059 - AluJo SINE Alu 0 312 1 461 246 11 2 chrX 47836159 47836276 -129137864 + MIR SINE MIR 32 147 -62 389 268 185 5 chrX 47836446 47836651 -129137489 - MIR SINE MIR 0 262 21 414 310 46 17 chrX 47837407 47837581 -129136559 - L3 LINE CR1 -211 1366 1188 412 333 68 0 chrX 47838572 47838704 -129135436 - MIR3 SINE MIR -65 143 3 1846 150 34 0 chrX 47839035 47839328 -129134812 - AluJo SINE Alu -1 311 9 257 272 68 19 chrX 47839566 47839669 -129134471 - MIR SINE MIR -81 181 74 216 328 176 8 chrX 47839681 47839800 -129134340 + MIR SINE MIR 123 261 -1 180 342 148 7 chrX 47840582 47840731 -129133409 + MIR SINE MIR 50 219 -43 1979 135 0 16 chrX 47841306 47841609 -129132531 + AluSx SINE Alu 1 298 -14 289 304 42 115 chrX 47841762 47841796 -129132344 + MIR3 SINE MIR 3 38 -170 7904 168 69 26 chrX 47841796 47843802 -129130338 + L1PA13 LINE L1 3888 5936 -227 1459 151 0 0 chrX 47843802 47844027 -129130113 + AluSx SINE Alu 1 225 -87 7904 168 69 26 chrX 47844027 47844266 -129129874 + L1PA13 LINE L1 5936 6163 0 289 304 42 115 chrX 47844266 47844448 -129129692 + MIR3 SINE MIR 38 203 -5 541 306 140 0 chrX 47844809 47844995 -129129145 - MIR SINE MIR -48 214 3 248 221 205 56 chrX 47845063 47845312 -129128828 + L1ME4a LINE L1 5764 6049 -72 759 191 119 44 chrX 47846087 47846381 -129127759 - Charlie4a DNA MER1_type -7 501 186 2229 93 0 13 chrX 47846386 47846522 -129127618 + AluSq SINE Alu 1 137 -176 2080 110 3 7 chrX 47846522 47846830 -129127310 + AluSp SINE Alu 1 307 -6 2229 93 0 13 chrX 47846830 47847004 -129127136 + AluSq SINE Alu 137 307 -6 1181 101 0 0 chrX 47847004 47847162 -129126978 + AluSg/x SINE Alu 132 289 -21 476 167 14 176 chrX 47847251 47847461 -129126679 - Charlie4a DNA MER1_type -330 178 3 193 327 137 59 chrX 47847482 47848016 -129126124 - L2 LINE L2 0 3272 2695 2528 107 14 44 chrX 47848600 47848899 -129125241 + L1MA5A LINE L1 5535 5841 -456 2119 106 0 0 chrX 47848899 47849205 -129124935 + AluSx SINE Alu 1 306 0 2528 107 14 44 chrX 47849205 47849290 -129124850 + L1MA5A LINE L1 5841 5927 -370 2135 113 0 0 chrX 47849290 47849582 -129124558 + AluSx SINE Alu 2 293 -19 742 110 18 0 chrX 47849582 47849691 -129124449 + L1MA5A LINE L1 6172 6282 -15 2528 107 14 44 chrX 47849691 47849722 -129124418 + L1MA5A LINE L1 5925 6282 -15 678 176 15 30 chrX 47849731 47849862 -129124278 + FLAM_C SINE Alu 1 129 -4 36 23 0 0 chrX 47849867 47849910 -129124230 + AT_rich Low_complexity Low_complexity 1 43 0 265 221 3 0 chrX 47851007 47851061 -129123079 - MIR SINE MIR -62 146 100 519 333 0 43 chrX 47852647 47852811 -129121329 - MIR3 SINE MIR -7 201 46 2127 114 0 3 chrX 47852811 47853110 -129121030 + AluSx SINE Alu 1 298 -14 519 333 0 43 chrX 47853110 47853155 -129120985 - MIR3 SINE MIR -162 46 1 1650 147 16 45 chrX 47854010 47854324 -129119816 + AluJb SINE Alu 1 305 -7 304 234 75 32 chrX 47854485 47854579 -129119561 + MIR SINE MIR 103 200 -62 198 150 0 0 chrX 47854621 47854661 -129119479 + (TAAAAA)n Simple_repeat Simple_repeat 5 44 0 1961 125 0 0 chrX 47855188 47855498 -129118642 - AluSx SINE Alu 0 310 1 2171 92 0 23 chrX 47855569 47855874 -129118266 + AluSx SINE Alu 1 298 -14 272 236 86 64 chrX 47856223 47856363 -129117777 - MER5A DNA MER1_type -7 182 40 910 223 90 0 chrX 47856926 47857114 -129117026 - MER63A DNA MER1_type 0 210 6 236 250 0 0 chrX 47857141 47857197 -129116943 - MIR SINE MIR -109 153 98 186 212 0 0 chrX 47857195 47857228 -129116912 + MIR SINE MIR 67 99 -163 * 467 294 25 37 chrX 47857586 47857749 -129116391 + MIR SINE MIR 96 256 -6 253 274 133 44 chrX 47857928 47858041 -129116099 - MIR SINE MIR -65 143 21 2413 68 0 0 chrX 47858105 47858415 -129115725 - AluY SINE Alu -1 310 1 482 317 82 11 chrX 47858863 47859046 -129115094 + MIR3 SINE MIR 2 197 -11 243 0 0 0 chrX 47861630 47861657 -129112483 + (TG)n Simple_repeat Simple_repeat 1 27 0 218 248 97 110 chrX 47861834 47861979 -129112161 - L2 LINE L2 -212 3060 2918 2127 97 6 25 chrX 47862345 47862664 -129111476 - AluSq SINE Alu 0 313 1 378 42 0 0 chrX 47862772 47862820 -129111320 + (CA)n Simple_repeat Simple_repeat 1 48 0 2069 95 7 3 chrX 47863255 47863550 -129110590 + AluSx SINE Alu 2 297 -15 514 234 25 117 chrX 47863679 47863795 -129110345 - MIR SINE MIR -12 250 158 2343 70 0 16 chrX 47863795 47864111 -129110029 - AluY SINE Alu 0 311 1 514 234 25 117 chrX 47864111 47864191 -129109949 - MIR SINE MIR -104 158 72 1720 36 5 0 chrX 47864415 47864637 -129109503 + L1P LINE L1 2994 3216 -2930 1925 95 0 0 chrX 47864947 47865210 -129108930 + AluSq SINE Alu 45 307 -6 2155 115 0 3 chrX 47866077 47866390 -129107750 + AluSq SINE Alu 1 312 -1 201 333 0 0 chrX 47866619 47866676 -129107464 - L2 LINE L2 -16 3256 3200 322 242 11 33 chrX 47867690 47867781 -129106359 + MER5B DNA MER1_type 10 98 -80 205 341 87 16 chrX 47868655 47868781 -129105359 - MIR3 SINE MIR -9 199 65 298 323 20 10 chrX 47869402 47869501 -129104639 + MIR SINE MIR 54 153 -109 819 139 0 23 chrX 47869506 47869635 -129104505 + AluJb SINE Alu 2 127 -185 2162 78 7 11 chrX 47870499 47870818 -129103322 - AluSg SINE Alu 0 318 1 466 314 30 12 chrX 47871065 47871234 -129102906 - MIR SINE MIR -19 243 72 207 0 0 0 chrX 47871926 47871949 -129102191 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 473 120 0 140 chrX 47871951 47872002 -129102138 - HY4 scRNA scRNA 0 93 61 1659 178 34 0 chrX 47872002 47872294 -129101846 + AluSx SINE Alu 6 307 -5 473 120 0 140 chrX 47872294 47872342 -129101798 - HY4 scRNA scRNA -32 61 8 1663 166 3 3 chrX 47872854 47873137 -129101003 + AluJo SINE Alu 11 293 -19 2265 92 3 0 chrX 47873145 47873448 -129100692 + AluSq SINE Alu 1 304 -9 2173 115 0 3 chrX 47873641 47873954 -129100186 + AluSx SINE Alu 1 312 0 468 51 0 0 chrX 47874439 47874498 -129099642 + (TGG)n Simple_repeat Simple_repeat 2 60 0 481 234 62 55 chrX 47875137 47875265 -129098875 - L2 LINE L2 -4 3309 3181 213 323 83 21 chrX 47875261 47875357 -129098783 + MIR3 SINE MIR 6 107 -101 * 336 318 7 40 chrX 47876115 47876263 -129097877 - MIR SINE MIR -25 237 95 2016 118 0 7 chrX 47876832 47877142 -129096998 + AluSx SINE Alu 1 308 0 294 269 39 9 chrX 47877350 47877467 -129096673 + L1ME LINE L1 5698 5818 -303 315 240 219 0 chrX 47879021 47879117 -129095023 - MIR SINE MIR -55 153 37 2173 113 0 0 chrX 47880101 47880401 -129093739 - AluSx SINE Alu -6 306 7 2214 108 0 10 chrX 47880755 47881069 -129093071 + AluSx SINE Alu 1 311 -1 2307 85 0 0 chrX 47881945 47882240 -129091900 + AluSx SINE Alu 1 295 -17 985 219 70 8 chrX 47882821 47883063 -129091077 - MIR SINE MIR -3 259 3 347 339 23 9 chrX 47883506 47883618 -129090522 + MIR SINE MIR 1 117 -91 346 338 166 0 chrX 47883994 47884139 -129090001 + MIR3 SINE MIR 32 200 -8 1271 71 24 0 chrX 47884253 47884423 -129089717 + AluSp SINE Alu 125 298 -15 207 200 261 0 chrX 47884952 47885017 -129089123 + L2 LINE L2 3232 3313 0 263 270 54 63 chrX 47885077 47885188 -129088952 - MIR3 SINE MIR -15 193 84 230 245 0 20 chrX 47885857 47885906 -129088234 + MIR3 SINE MIR 145 192 -16 442 346 13 13 chrX 47886629 47886785 -129087355 + MIR3 SINE MIR 45 200 -8 477 0 0 0 chrX 47886927 47886980 -129087160 + (TA)n Simple_repeat Simple_repeat 1 53 0 2399 77 0 0 chrX 47887124 47887434 -129086706 - AluSg SINE Alu 0 310 1 361 256 72 133 chrX 47887930 47888110 -129086030 + MIR3 SINE MIR 34 202 -6 200 337 10 0 chrX 47890221 47890322 -129083818 + C-rich Low_complexity Low_complexity 4 105 0 * 216 182 34 45 chrX 47890263 47890351 -129083789 + (CCCCG)n Simple_repeat Simple_repeat 1 87 0 * 242 188 0 71 chrX 47890305 47890390 -129083750 + (CCCGG)n Simple_repeat Simple_repeat 1 79 0 764 292 103 4 chrX 47890517 47890798 -129083342 - L3 LINE CR1 -90 1487 1179 772 158 0 38 chrX 47891117 47891250 -129082890 + FLAM_C SINE Alu 2 129 -14 2021 90 29 0 chrX 47891258 47891537 -129082603 + AluSx SINE Alu 1 287 -25 1576 143 33 50 chrX 47891565 47891865 -129082275 + AluSx SINE Alu 7 301 -11 631 255 16 65 chrX 47892002 47892186 -129081954 + MIR3 SINE MIR 20 194 -14 2105 130 0 0 chrX 47892827 47893128 -129081012 + AluSx SINE Alu 1 301 -11 302 281 56 11 chrX 47893269 47893358 -129080782 - MIR3 SINE MIR -39 169 77 191 274 0 20 chrX 47893363 47893414 -129080726 - L2 LINE L2 -667 2647 2598 4835 156 23 55 chrX 47893424 47893793 -129080347 - L1PA16 LINE L1 -3 6163 5784 2364 75 0 7 chrX 47893793 47894100 -129080040 - AluY SINE Alu -6 305 1 4835 156 23 55 chrX 47894100 47894604 -129079536 - L1PA16 LINE L1 -382 5784 5266 2243 98 0 0 chrX 47894604 47894901 -129079239 - AluSq SINE Alu -16 297 1 4835 156 23 55 chrX 47894901 47895850 -129078290 - L1PA16 LINE L1 -900 5266 4387 1738 161 21 0 chrX 47895854 47896139 -129078001 - AluSx SINE Alu -21 291 1 3952 193 4 38 chrX 47896174 47896623 -129077517 + L1 LINE L1 3564 4027 -2119 2113 123 0 0 chrX 47896623 47896925 -129077215 + AluSx SINE Alu 11 312 0 3952 193 4 38 chrX 47896925 47897012 -129077128 + L1 LINE L1 4027 4115 -2031 2311 80 3 0 chrX 47897012 47897311 -129076829 + AluSg SINE Alu 1 300 -10 3952 193 4 38 chrX 47897311 47897618 -129076522 + L1 LINE L1 4115 4379 -1767 2035 124 3 10 chrX 47898424 47898730 -129075410 + AluSx SINE Alu 2 305 -7 2248 103 3 0 chrX 47898733 47899044 -129075096 + AluSx SINE Alu 1 312 0 349 310 94 44 chrX 47899827 47900030 -129074110 - MIR SINE MIR -22 240 28 186 219 0 0 chrX 47900534 47900575 -129073565 - L2 LINE L2 -23 3249 3209 197 336 42 7 chrX 47900756 47900899 -129073241 + L2 LINE L2 2551 2698 -616 356 40 20 0 chrX 47901561 47901611 -129072529 + (CA)n Simple_repeat Simple_repeat 2 52 0 466 207 119 21 chrX 47901663 47901805 -129072335 + L1M3 LINE L1 5670 5823 -326 2004 126 0 0 chrX 47901810 47902124 -129072016 + AluSq SINE Alu 1 314 0 421 335 113 10 chrX 47902205 47902408 -129071732 + L3 LINE CR1 1284 1507 -70 264 273 68 16 chrX 47902500 47902624 -129071516 - MIR SINE MIR -36 172 34 569 274 22 7 chrX 47902744 47902879 -129071261 - L2 LINE L2 0 3272 3136 378 331 52 13 chrX 47903260 47903414 -129070726 + MIR SINE MIR 18 177 -85 2162 72 6 50 chrX 47903458 47903776 -129070364 + AluY SINE Alu 1 304 -7 2080 100 0 7 chrX 47903801 47904092 -129070048 + AluSq SINE Alu 1 289 -24 291 286 124 9 chrX 47905010 47905115 -129069025 - MIR3 SINE MIR -1 207 91 666 122 0 0 chrX 47905817 47905907 -129068233 - AluS SINE Alu -221 91 2 1972 100 0 35 chrX 47905979 47906269 -129067871 + AluSq SINE Alu 1 280 -33 396 0 0 0 chrX 47906274 47906318 -129067822 + (TAA)n Simple_repeat Simple_repeat 2 45 0 207 275 47 74 chrX 47906327 47906476 -129067664 + L2 LINE L2 3045 3189 -124 409 177 0 0 chrX 47906532 47906611 -129067529 - Alu SINE Alu 0 312 234 935 123 0 0 chrX 47906611 47906741 -129067399 - AluSq/x SINE Alu -183 130 1 1676 176 105 46 chrX 47906742 47907180 -129066960 + MLT1D LTR MaLR 42 505 0 501 333 0 8 chrX 47907180 47907312 -129066828 + L2 LINE L2 3142 3272 0 1798 138 0 82 chrX 47907492 47907832 -129066308 + AluSx SINE Alu 1 312 0 189 295 33 0 chrX 47907928 47907989 -129066151 - L2 LINE L2 0 3272 3210 450 127 0 0 chrX 47908203 47908274 -129065866 + (CA)n Simple_repeat Simple_repeat 2 72 0 1916 111 3 46 chrX 47908290 47908597 -129065543 - AluSg SINE Alu -16 294 1 261 57 0 0 chrX 47908597 47908632 -129065508 + (TA)n Simple_repeat Simple_repeat 1 35 0 487 0 32 0 chrX 47908948 47909011 -129065129 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 1963 106 29 0 chrX 47909014 47909289 -129064851 - AluSg SINE Alu -27 283 1 2305 85 0 0 chrX 47909299 47909604 -129064536 - AluSx SINE Alu -2 310 6 243 204 0 0 chrX 47909604 47909648 -129064492 - AluJ/monomer SINE Alu -258 44 1 966 288 46 79 chrX 47909692 47910297 -129063843 + L2 LINE L2 2443 3030 -242 2221 97 0 3 chrX 47910369 47910667 -129063473 + AluSg SINE Alu 1 297 -13 297 382 30 65 chrX 47910857 47910901 -129063239 - L2 LINE L2 -481 2833 2789 2177 81 0 3 chrX 47910901 47911216 -129062924 - AluSp SINE Alu 0 314 1 297 382 30 65 chrX 47911216 47911432 -129062708 - L2 LINE L2 -525 2789 2581 734 184 44 25 chrX 47911772 47911930 -129062210 - MER46A DNA MER2_type -1 235 75 284 253 24 0 chrX 47911874 47911957 -129062183 + Tigger4(Zombi) DNA MER2_type 2646 2730 -1 * 242 259 153 0 chrX 47912059 47912144 -129061996 - L2 LINE L2 -928 2386 2289 187 333 0 0 chrX 47912283 47912343 -129061797 + L2 LINE L2 2976 3035 -237 306 277 136 63 chrX 47912955 47913290 -129060850 + L2 LINE L2 2730 3098 -174 730 283 0 11 chrX 47913407 47913587 -129060553 + MIR3 SINE MIR 22 199 -9 222 211 58 0 chrX 47913832 47913884 -129060256 - MIR SINE MIR -117 145 91 390 179 211 11 chrX 47913931 47914026 -129060114 + MER81 DNA DNA 1 114 0 683 233 5 85 chrX 47914207 47914396 -129059744 + MER5B DNA MER1_type 2 175 -3 287 282 25 98 chrX 47915105 47915268 -129058872 - L3 LINE CR1 -98 1479 1329 279 259 59 0 chrX 47915272 47915357 -129058783 - L3 LINE CR1 -376 1201 1112 342 0 0 0 chrX 47915491 47915529 -129058611 + (CA)n Simple_repeat Simple_repeat 2 39 0 591 289 118 58 chrX 47915535 47915718 -129058422 - L1MC4a LINE L1 -1896 5912 5741 2385 81 3 0 chrX 47915718 47916028 -129058112 - AluSp SINE Alu -2 311 1 591 289 118 58 chrX 47916028 47916277 -129057863 - L1MC4a LINE L1 -2067 5741 5454 315 0 0 0 chrX 47916279 47916314 -129057826 + (TA)n Simple_repeat Simple_repeat 1 35 0 2257 91 0 0 chrX 47916320 47916617 -129057523 - AluSx SINE Alu -15 297 1 1890 151 0 0 chrX 47916740 47917038 -129057102 - AluSx SINE Alu -14 298 1 2036 105 10 20 chrX 47917300 47917606 -129056534 - AluSq SINE Alu -10 303 1 250 313 122 9 chrX 47917718 47917833 -129056307 + MIR3 SINE MIR 45 172 -36 453 211 0 44 chrX 47917868 47917958 -129056182 + L2 LINE L2 3187 3272 0 202 290 29 103 chrX 47918350 47918420 -129055720 + MIR SINE MIR 40 97 -132 2266 99 0 3 chrX 47918420 47918724 -129055416 + AluSq SINE Alu 1 303 -10 202 290 29 103 chrX 47918724 47918791 -129055349 + MIR SINE MIR 97 167 -62 452 286 66 28 chrX 47918846 47919011 -129055129 - MIR SINE MIR -54 208 34 1952 138 10 3 chrX 47919011 47919316 -129054824 + AluSx SINE Alu 1 307 -5 452 286 66 28 chrX 47919316 47919332 -129054808 - MIR SINE MIR -228 34 20 506 346 108 27 chrX 47919345 47919640 -129054500 - L2 LINE L2 -28 3244 2926 742 263 102 33 chrX 47919768 47920042 -129054098 - L2 LINE L2 -5 3308 3016 866 127 0 8 chrX 47920042 47920176 -129053964 + FLAM_C SINE Alu 6 138 -5 530 228 52 57 chrX 47920178 47920371 -129053769 - L2 LINE L2 -296 3017 2826 2304 99 3 0 chrX 47920432 47920744 -129053396 - AluSp SINE Alu 0 313 1 2291 63 6 35 chrX 47920749 47921065 -129053075 - AluY SINE Alu -4 307 1 2185 100 0 31 chrX 47921090 47921410 -129052730 - AluSq SINE Alu -3 310 1 206 321 72 99 chrX 47921541 47921834 -129052306 - L2 LINE L2 -465 2849 2565 280 282 90 0 chrX 47921933 47922011 -129052129 + MIR3 SINE MIR 109 193 -15 302 299 43 55 chrX 47922598 47922852 -129051288 + L1M4c LINE L1 945 1195 -5189 2320 90 0 0 chrX 47923222 47923534 -129050606 - AluSx SINE Alu 0 312 1 238 325 61 57 chrX 47923860 47924057 -129050083 + MIR SINE MIR 2 187 -63 314 260 21 10 chrX 47924151 47924247 -129049893 - MIR SINE MIR -70 138 42 404 374 16 47 chrX 47924814 47925071 -129049069 + L2 LINE L2 2937 3185 -87 202 185 383 12 chrX 47925091 47925172 -129048968 - MIR SINE MIR 0 262 152 2555 194 10 62 chrX 47925185 47925407 -129048733 + L1MD1 LINE L1 5434 5666 -576 1885 177 87 11 chrX 47925407 47925774 -129048366 - MSTD LTR MaLR 0 396 2 2555 194 10 62 chrX 47925774 47925892 -129048248 + L1MD1 LINE L1 5666 5789 -453 1398 198 14 21 chrX 47925892 47926180 -129047960 + AluJo SINE Alu 5 290 -22 2555 194 10 62 chrX 47926180 47926471 -129047669 + L1MD1 LINE L1 5789 5977 -265 2125 113 7 0 chrX 47926471 47926772 -129047368 + AluSx SINE Alu 1 303 -9 2555 194 10 62 chrX 47926772 47927024 -129047116 + L1MD1 LINE L1 5977 6241 -1 1400 148 21 118 chrX 47927022 47927244 -129046896 + L1MB7 LINE L1 5821 6063 -121 * 1462 179 12 64 chrX 47927244 47927573 -129046567 - AluJo SINE Alu 0 312 1 1400 148 21 118 chrX 47927573 47927673 -129046467 + L1MB7 LINE L1 6063 6171 -13 1989 127 0 0 chrX 47927673 47927965 -129046175 - AluSx SINE Alu -17 295 4 1400 148 21 118 chrX 47927965 47928001 -129046139 + L1MB7 LINE L1 6171 6209 25 2749 87 0 0 chrX 47928001 47928356 -129045784 + THE1A LTR MaLR 1 355 0 11500 92 21 11 chrX 47928356 47928780 -129045360 + THE1A-int LTR MaLR 1 419 -1161 2097 108 0 17 chrX 47928780 47929077 -129045063 - AluSx SINE Alu -15 297 6 11500 92 21 11 chrX 47929077 47930217 -129043923 + THE1A-int LTR MaLR 419 1580 0 2539 93 29 0 chrX 47930217 47930562 -129043578 + THE1A LTR MaLR 1 355 0 512 299 91 67 chrX 47930668 47931073 -129043067 + L1MB2 LINE L1 9 423 -6119 1356 211 53 51 chrX 47931254 47931611 -129042529 + L1MB2 LINE L1 823 1183 -5359 2366 76 0 0 chrX 47931611 47931913 -129042227 + AluY SINE Alu 1 302 -9 1356 211 53 51 chrX 47931913 47932049 -129042091 + L1MB2 LINE L1 1183 1317 -5225 * 2916 224 54 28 chrX 47932037 47932942 -129041198 + L1MB2 LINE L1 2584 3510 -3134 500 171 19 0 chrX 47932946 47933051 -129041089 + CT-rich Low_complexity Low_complexity 4 110 0 948 122 14 0 chrX 47933051 47933198 -129040942 - AluSg/x SINE Alu 0 312 164 4878 224 21 131 chrX 47933200 47933487 -129040653 + L1MB2 LINE L1 3497 3814 -2830 1993 98 4 0 chrX 47933487 47933752 -129040388 + AluSp SINE Alu 1 266 -47 4878 224 21 131 chrX 47933752 47934036 -129040104 + L1MB2 LINE L1 3814 4128 -2516 2259 87 0 3 chrX 47934036 47934336 -129039804 - AluSq SINE Alu -14 299 1 4878 224 21 131 chrX 47934336 47935054 -129039086 + L1MB2 LINE L1 4128 4923 -1721 1965 138 20 0 chrX 47935054 47935358 -129038782 + AluSx SINE Alu 1 310 -2 4878 224 21 131 chrX 47935358 47935465 -129038675 + L1MB2 LINE L1 4923 5040 -1604 1941 142 0 16 chrX 47935465 47935781 -129038359 + AluSx SINE Alu 1 311 -1 4878 224 21 131 chrX 47935781 47936650 -129037490 + L1MB2 LINE L1 5040 5474 -1170 1895 116 35 0 chrX 47936650 47936935 -129037205 + AluY SINE Alu 1 295 -16 4878 224 21 131 chrX 47936935 47937144 -129036996 + L1MB2 LINE L1 5474 5704 -940 * 40448 38 21 1 chrX 47937129 47943161 -129030979 + L1PA2 LINE L1 1 6155 0 25 31 0 0 chrX 47943162 47943194 -129030946 + AT_rich Low_complexity Low_complexity 1 32 0 7045 94 15 0 chrX 47943194 47944979 -129029161 + L1PA7 LINE L1 4352 6152 -2 1890 149 42 0 chrX 47945021 47945309 -129028831 + AluSg SINE Alu 4 303 -7 4507 164 9 38 chrX 47945310 47945438 -129028702 + L1MB2 LINE L1 5679 5809 -860 1926 157 81 19 chrX 47945438 47945808 -129028332 - MSTD LTR MaLR -3 393 1 4507 164 9 38 chrX 47945808 47946404 -129027736 + L1MB2 LINE L1 5809 6372 -297 2240 114 16 0 chrX 47946404 47946710 -129027430 + AluSx SINE Alu 1 311 -1 4507 164 9 38 chrX 47946710 47946980 -129027160 + L1MB2 LINE L1 6372 6648 -21 300 135 58 0 chrX 47946981 47947033 -129027107 - AluJb SINE Alu -11 289 235 3698 169 16 4 chrX 47947076 47947782 -129026358 + L1MB4 LINE L1 5467 6180 0 222 230 380 10 chrX 47947855 47947955 -129026185 - L2 LINE L2 -19 3294 3158 2248 106 0 0 chrX 47947970 47948262 -129025878 - AluY SINE Alu -19 292 1 37 23 0 0 chrX 47948771 47948815 -129025325 + AT_rich Low_complexity Low_complexity 1 44 0 286 248 214 0 chrX 47948968 47949113 -129025027 - MIR SINE MIR -2 260 85 200 86 29 0 chrX 47949402 47949437 -129024703 + (CA)n Simple_repeat Simple_repeat 1 36 0 469 200 45 55 chrX 47949929 47950039 -129024101 - AluJb SINE Alu -81 231 123 2636 141 15 4 chrX 47950468 47950936 -129023204 - L1MC1 LINE L1 -318 6015 5543 338 202 50 10 chrX 47950905 47951004 -129023136 - L1ME3 LINE L1 -140 6022 5920 * 870 214 168 10 chrX 47951171 47951474 -129022666 - L1ME3 LINE L1 -228 5934 5584 2313 161 68 2 chrX 47951639 47952106 -129022034 + L1MB4 LINE L1 5683 6180 0 28027 108 16 23 chrX 47952878 47959214 -129014926 - L1PA7 LINE L1 -6 6463 91 26 50 0 0 chrX 47959233 47959273 -129014867 + AT_rich Low_complexity Low_complexity 1 40 0 40 0 0 0 chrX 47959329 47959369 -129014771 + AT_rich Low_complexity Low_complexity 1 40 0 399 267 73 12 chrX 47959373 47959538 -129014602 - L1ME3 LINE L1 -755 5391 5217 193 366 97 21 chrX 47959685 47959778 -129014362 + L2 LINE L2 3164 3263 -9 2971 211 57 14 chrX 47959900 47959947 -129014193 - L1M4 LINE L1 -663 6153 6109 2751 152 22 2 chrX 47959947 47960395 -129013745 + MSTB2 LTR MaLR 1 457 0 2971 211 57 14 chrX 47960395 47961307 -129012833 - L1M4 LINE L1 -707 6109 5158 2220 128 116 21 chrX 47961312 47961701 -129012439 + MSTA LTR MaLR 1 426 -2 3218 163 0 0 chrX 47961704 47962261 -129011879 + MSTA-int LTR MaLR 1 557 -1094 1861 211 18 0 chrX 48062261 48062597 -128911543 - L1M4 LINE L1 -6444 345 4 1745 257 28 22 chrX 48062606 48063257 -128910883 - L1M4c LINE L1 -4103 1541 1291 2352 77 6 13 chrX 48064226 48064539 -128909601 - AluY SINE Alu 0 311 1 361 111 9 0 chrX 48065735 48065816 -128908324 - L1M4c LINE L1 -4847 1718 1634 8879 215 30 29 chrX 48065822 48066676 -128907464 - L1 LINE L1 -889 5257 4406 1636 206 7 0 chrX 48066676 48066977 -128907163 + AluJo SINE Alu 5 307 -5 8879 215 30 29 chrX 48066977 48067098 -128907042 - L1 LINE L1 -1740 4406 4287 2247 120 0 0 chrX 48067098 48067407 -128906733 - AluSc SINE Alu 0 309 1 8879 215 30 29 chrX 48067407 48068809 -128905331 - L1 LINE L1 -1859 4287 2875 2844 270 65 47 chrX 48068810 48070057 -128904083 - L1M4c LINE L1 -5266 1276 8 1053 317 35 50 chrX 48070067 48070727 -128903413 - L1MEc LINE L1 -5708 688 39 180 125 0 0 chrX 48070734 48070766 -128903374 + (CAA)n Simple_repeat Simple_repeat 2 33 0 373 275 188 0 chrX 48071428 48071577 -128902563 + MIR3 SINE MIR 27 203 -5 468 328 65 32 chrX 48071674 48071921 -128902219 + MIR SINE MIR 5 259 -3 3705 150 20 6 chrX 48072154 48072806 -128901334 - L1PB3 LINE L1 0 6154 5494 188 318 16 16 chrX 48072920 48072983 -128901157 - L3 LINE CR1 -351 1226 1164 575 327 60 16 chrX 48073264 48073512 -128900628 - MIR SINE MIR -1 261 3 230 309 114 16 chrX 48073723 48073846 -128900294 + MIR SINE MIR 63 197 -65 257 185 15 131 chrX 48074602 48074732 -128899408 + MER113 DNA MER1_type? 8 122 -399 328 216 0 54 chrX 48074887 48074961 -128899179 + MER113 DNA MER1_type? 452 521 0 603 291 55 21 chrX 48075469 48075706 -128898434 - MIR SINE MIR -15 247 3 631 181 0 16 chrX 48075756 48075883 -128898257 - L1P5 LINE L1 -544 5612 5488 1061 168 5 5 chrX 48075884 48076075 -128898065 - L1PA15 LINE L1 -1 6164 5974 344 229 86 29 chrX 48076097 48076237 -128897903 - L1 LINE L1 -1680 4466 4319 4392 103 3 3 chrX 48076242 48076874 -128897266 - L1PB1 LINE L1 0 6802 6171 8560 208 14 24 chrX 48076875 48078842 -128895298 - L1PB1 LINE L1 -970 5827 3881 6740 42 1 1 chrX 48078860 48079683 -128894457 - L1PA6 LINE L1 -3 6151 5329 6107 245 33 36 chrX 48079680 48083371 -128890769 - L1PB1 LINE L1 -2901 3896 9 * 838 248 53 27 chrX 48083830 48084050 -128890090 + MIR SINE MIR 7 227 -35 14084 42 2 0 chrX 48084050 48086532 -128887608 + L1PA5 LINE L1 3667 6152 -2 3927 187 24 14 chrX 48086525 48087859 -128886281 + L1P5 LINE L1 4275 5622 -529 * 440 241 69 17 chrX 48087870 48087986 -128886154 + L2 LINE L2 3188 3309 -4 321 303 32 64 chrX 48087992 48088142 -128885998 - L1M4 LINE L1 -1311 4835 4693 1740 118 57 11 chrX 48088142 48088421 -128885719 + AluSx SINE Alu 1 292 -20 321 303 32 64 chrX 48088421 48088488 -128885652 - L1M4 LINE L1 -1453 4693 4625 10131 165 34 25 chrX 48088578 48091456 -128882684 - L1PA13 LINE L1 -5 6158 3264 1000 186 36 27 chrX 48091661 48091715 -128882425 + Tigger1 DNA MER2_type 1 53 -2365 1527 188 61 3 chrX 48091715 48092008 -128882132 - AluJb SINE Alu -1 311 2 1000 186 36 27 chrX 48092008 48092173 -128881967 + Tigger1 DNA MER2_type 53 222 -2196 5141 188 23 8 chrX 48092192 48094149 -128879991 - L1MA4 LINE L1 -1 6579 4598 19791 218 33 25 chrX 48094159 48099205 -128874935 + L1PA12 LINE L1 8 5912 -1672 252 0 0 0 chrX 48099205 48099233 -128874907 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 19791 218 33 25 chrX 48099233 48100171 -128873969 + L1PA12 LINE L1 5912 6841 -743 683 274 17 11 chrX 48100176 48100355 -128873785 + LTR28 LTR ERV1 1 180 -840 763 251 83 55 chrX 48100383 48100866 -128873274 + MER52A LTR ERV1 278 1470 -35 538 279 6 6 chrX 48100869 48101027 -128873113 + MER52A LTR ERV1 1598 1755 0 4861 117 14 7 chrX 48101027 48101769 -128872371 + L1PA11 LINE L1 5405 6151 -23 3366 198 40 24 chrX 48101779 48104070 -128870070 - L1MA4 LINE L1 -1837 4589 2062 3717 139 217 88 chrX 48104072 48104211 -128869929 + MER11B LTR ERVK 1 121 -1115 2212 111 0 19 chrX 48104211 48104518 -128869622 - AluY SINE Alu -10 301 1 3717 139 217 88 chrX 48104518 48105469 -128868671 + MER11B LTR ERVK 121 1232 -4 1277 236 29 5 chrX 48105474 48105855 -128868285 - L1MA4 LINE L1 -4361 2065 1564 299 164 0 0 chrX 48105865 48105926 -128868214 - L1PB1 LINE L1 -22 6845 6785 * 43495 43 1 3 chrX 48105924 48112089 -128862051 - L1PA3 LINE L1 0 6155 1 13173 164 66 20 chrX 48112089 48113154 -128860986 - L1PB1 LINE L1 -68 6799 5784 362 131 0 7 chrX 48113154 48113219 -128860921 - Alu SINE Alu -6 296 242 13173 164 66 20 chrX 48113219 48113819 -128860321 - L1PB1 LINE L1 -1083 5784 5213 450 0 0 0 chrX 48113819 48113869 -128860271 + (TTA)n Simple_repeat Simple_repeat 2 51 0 13173 164 66 20 chrX 48113869 48116619 -128857521 - L1PB1 LINE L1 -1654 5213 1982 477 50 0 0 chrX 48116619 48116679 -128857461 + (TG)n Simple_repeat Simple_repeat 1 60 0 13173 164 66 20 chrX 48116679 48118091 -128856049 - L1PB1 LINE L1 -4885 1982 636 1300 131 0 0 chrX 48118093 48118292 -128855848 - L1PB1 LINE L1 -6663 200 2 5236 253 44 27 chrX 48118296 48120420 -128853720 - L1M1 LINE L1 -4705 2860 12 11280 163 34 18 chrX 48120420 48122525 -128851615 + Tigger1 DNA MER2_type 217 2355 -63 249 224 0 0 chrX 48122525 48122583 -128851557 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 429 244 0 0 chrX 48122600 48122682 -128851458 + Tigger1 DNA MER2_type 2337 2418 0 609 86 12 0 chrX 48122868 48122949 -128851191 - MSTB LTR MaLR -344 82 1 541 135 42 0 chrX 48122949 48123042 -128851098 + MER46A DNA MER2_type 140 236 0 260 224 0 0 chrX 48123143 48123201 -128850939 + L1PB1 LINE L1 5730 5787 -517 29 28 0 0 chrX 48123302 48123338 -128850802 + AT_rich Low_complexity Low_complexity 1 36 0 594 292 0 7 chrX 48123573 48123710 -128850430 - L2 LINE L2 0 3272 3137 618 90 57 26 chrX 48123727 48124021 -128850119 + (TA)n Simple_repeat Simple_repeat 1 303 0 1750 152 10 3 chrX 48124122 48124432 -128849708 + L1PB1 LINE L1 5832 6143 -8 23 0 0 0 chrX 48124436 48124459 -128849681 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chrX 48124553 48124576 -128849564 + (A)n Simple_repeat Simple_repeat 1 23 0 1996 281 46 17 chrX 48124576 48125467 -128848673 + L1MC/D LINE L1 2963 3879 -2267 369 0 0 0 chrX 48125471 48125512 -128848628 + (TA)n Simple_repeat Simple_repeat 1 41 0 13089 115 51 88 chrX 48125512 48125920 -128848220 - Tigger1 DNA MER2_type 0 2418 1997 877 209 0 0 chrX 48125920 48126068 -128848072 - FRAM SINE Alu -16 160 13 13089 115 51 88 chrX 48126068 48128016 -128846124 - Tigger1 DNA MER2_type -421 1997 6 4593 214 70 12 chrX 48128031 48129523 -128844617 + L1MC/D LINE L1 3909 5484 -743 4013 182 20 8 chrX 48129511 48130307 -128843833 + L1MB8 LINE L1 5362 6167 -11 * 6670 147 44 18 chrX 48130523 48131607 -128842533 + Tigger3b DNA MER2_type 2 1121 -1907 2258 113 62 6 chrX 48131607 48131961 -128842179 - THE1C LTR MaLR 0 375 2 6670 147 44 18 chrX 48131961 48132075 -128842065 + Tigger3b DNA MER2_type 1121 1231 0 202 263 17 51 chrX 48132354 48132472 -128841668 + L2 LINE L2 2147 2260 -1054 793 199 152 28 chrX 48132521 48132732 -128841408 + MIR SINE MIR 25 261 -1 210 355 133 18 chrX 48132749 48133081 -128841059 + L2 LINE L2 2350 2719 -595 274 204 114 23 chrX 48133450 48133538 -128840602 - MER112 DNA MER1_type -50 210 115 716 271 70 76 chrX 48133763 48134065 -128840075 + LTR41 LTR ERVL 352 651 -122 6621 77 16 0 chrX 48134065 48135745 -128838395 - L1PA8 LINE L1 -3 6484 4789 5836 93 35 2 chrX 48135745 48136740 -128837400 + MER11B LTR ERVK 1 1004 -67 14389 103 13 10 chrX 48136774 48139088 -128835052 - L1PA8 LINE L1 -1668 4793 2473 10142 136 27 22 chrX 48139084 48141045 -128833095 - L1PA8 LINE L1 -4482 1979 6 * 250 161 7 182 chrX 48141051 48141194 -128832946 + LTR41 LTR ERVL 641 758 -15 315 0 0 0 chrX 48141237 48141272 -128832868 + (TG)n Simple_repeat Simple_repeat 2 36 0 673 315 195 29 chrX 48141986 48142500 -128831640 + L3 LINE CR1 141 739 -838 888 166 162 8 chrX 48142522 48142775 -128831365 - Charlie1a DNA MER1_type -5 1450 1159 4226 166 129 70 chrX 48142864 48143106 -128831034 - L1MCa LINE L1 -5229 1197 971 1599 59 14 18 chrX 48143106 48143325 -128830815 - L1PA10 LINE L1 -2 6166 5949 4226 166 129 70 chrX 48143325 48144194 -128829946 - L1MCa LINE L1 -5455 971 21 3293 210 52 21 chrX 48144194 48145047 -128829093 - Charlie1a DNA MER1_type -572 883 5 2596 115 53 29 chrX 48145165 48145583 -128828557 - MSTA LTR MaLR 0 428 1 8698 175 30 7 chrX 48145583 48147197 -128826943 - MSTA-int LTR MaLR 0 1651 1 2635 146 24 0 chrX 48147197 48147615 -128826525 - MSTA LTR MaLR 0 428 1 546 202 9 0 chrX 48147633 48147747 -128826393 - L1MC1 LINE L1 -6 6327 6213 391 303 86 0 chrX 48147778 48147930 -128826210 + MIR SINE MIR 82 246 -16 231 276 0 0 chrX 48147965 48148023 -128826117 + L3 LINE CR1 755 812 -765 1087 206 107 29 chrX 48148025 48148335 -128825805 - MLT1D LTR MaLR 0 505 172 2168 161 49 5 chrX 48148355 48148765 -128825375 - MSTA LTR MaLR 0 428 1 633 154 22 37 chrX 48148765 48148901 -128825239 - MLT1D LTR MaLR -349 156 23 369 296 110 78 chrX 48148907 48149165 -128824975 + L3 LINE CR1 808 1083 -494 7386 122 35 3 chrX 48149165 48150356 -128823784 + Tigger3b DNA MER2_type 1 1229 -2 369 296 110 78 chrX 48150356 48150469 -128823671 + L3 LINE CR1 1083 1191 -386 * 826 245 68 24 chrX 48150457 48150706 -128823434 - MIR SINE MIR 0 262 3 365 331 16 8 chrX 48150722 48150849 -128823291 + L3 LINE CR1 1217 1344 -233 261 182 0 0 chrX 48150947 48151002 -128823138 + Tigger3(Golem) DNA MER2_type 2713 2767 -262 * 497 130 0 0 chrX 48151001 48151078 -128823062 - Tigger3(Golem) DNA MER2_type -309 2720 2644 556 234 143 22 chrX 48151434 48151665 -128822475 + MER112 DNA MER1_type 1 259 -1 750 251 102 78 chrX 48151695 48152146 -128821994 + L2 LINE L2 675 1136 -2178 1890 179 11 22 chrX 48152665 48153034 -128821106 - MLT1A1 LTR MaLR 0 365 1 350 222 282 6 chrX 48153136 48153314 -128820826 + L1MC4 LINE L1 6443 6676 -1366 * 939 212 62 59 chrX 48153310 48153649 -128820491 + L1MC4 LINE L1 7550 7889 -153 1503 199 41 7 chrX 48153714 48154006 -128820134 - AluJo SINE Alu -10 302 1 14548 166 16 5 chrX 48154082 48160329 -128813811 - L1MA1 LINE L1 0 7721 1403 2800 101 18 2 chrX 48160331 48160766 -128813374 + L1MA2 LINE L1 5863 6304 0 2269 269 75 12 chrX 48160767 48161503 -128812637 + L2 LINE L2 1765 2546 -768 749 278 19 15 chrX 48161511 48161774 -128812366 + L1MDa LINE L1 34 297 -6243 2221 226 40 51 chrX 48162257 48163049 -128811091 + L1MDa LINE L1 813 1556 -4987 1627 176 75 17 chrX 48163059 48163354 -128810786 + AluJo SINE Alu 1 312 0 2260 258 67 67 chrX 48163390 48165450 -128808690 + L1M3d LINE L1 3 1413 -4516 9786 206 69 17 chrX 48165481 48169868 -128804272 + L1PA13 LINE L1 1 4622 -2175 384 138 0 0 chrX 48169866 48169931 -128804209 + L1M1 LINE L1 1544 1608 -5957 * 286 67 0 0 chrX 48169921 48169966 -128804174 + L1M1 LINE L1 2202 2246 -5319 * 399 66 100 27 chrX 48170081 48170414 -128803726 + (TA)n Simple_repeat Simple_repeat 1 357 0 22 56 0 0 chrX 48170425 48170461 -128803679 + AT_rich Low_complexity Low_complexity 1 36 0 428 61 110 6 chrX 48170461 48170624 -128803516 + (TA)n Simple_repeat Simple_repeat 1 180 0 842 286 14 5 chrX 48170663 48170876 -128803264 + MIR SINE MIR 48 262 0 337 153 0 0 chrX 48170926 48170985 -128803155 - L1PB1 LINE L1 -2 6149 6091 1264 44 27 6 chrX 48170985 48171168 -128802972 + L1P LINE L1 5170 5356 -790 7657 13 0 1 chrX 48171192 48172599 -128801541 - L1HS LINE L1 0 6155 4750 16837 23 0 0 chrX 48172599 48174680 -128799460 + L1HS LINE L1 2654 4734 -1412 1983 117 0 12 chrX 48174684 48174767 -128799373 - L1PB1 LINE L1 -53 6098 6016 6418 189 26 2 chrX 48174767 48174992 -128799148 - L1PA11 LINE L1 -159 6015 5797 267 31 0 0 chrX 48174992 48175024 -128799116 + (TG)n Simple_repeat Simple_repeat 2 33 0 6418 189 26 2 chrX 48175024 48176883 -128797257 - L1PA11 LINE L1 -377 5797 3854 10996 184 20 6 chrX 48177949 48180018 -128794122 + L1MA3 LINE L1 13 2110 -5455 280 170 0 0 chrX 48180018 48180065 -128794075 - THE1C LTR MaLR 0 355 309 485 49 111 6 chrX 48180071 48180233 -128793907 + (TA)n Simple_repeat Simple_repeat 2 180 0 1729 112 64 22 chrX 48180239 48180553 -128793587 - THE1C LTR MaLR -48 327 1 385 152 196 0 chrX 48180555 48180595 -128793545 + L1MA3 LINE L1 2108 2139 -5426 369 0 0 0 chrX 48180595 48180636 -128793504 + (GA)n Simple_repeat Simple_repeat 1 41 0 385 152 196 0 chrX 48180636 48180687 -128793453 + L1MA3 LINE L1 2139 2217 -5348 * 3633 169 7 15 chrX 48180672 48181425 -128792715 + L1PA11 LINE L1 3095 3841 -2305 6003 96 22 16 chrX 48181428 48181540 -128792600 + L1PA11 LINE L1 5082 5192 -982 2008 139 3 13 chrX 48181540 48181849 -128792291 + AluSx SINE Alu 1 306 -6 6003 96 22 16 chrX 48181849 48182843 -128791297 + L1PA11 LINE L1 5192 6174 0 5030 125 50 21 chrX 48182843 48183182 -128790958 + L1MA3 LINE L1 2194 2522 -5043 1489 186 8 11 chrX 48183182 48183445 -128790695 + AluSx SINE Alu 37 298 -14 5030 125 50 21 chrX 48183445 48184059 -128790081 + L1MA3 LINE L1 2522 3175 -4390 3416 137 4 0 chrX 48184059 48184612 -128789528 - HERVK22 LTR ERVK -2628 4209 3655 311 170 0 0 chrX 48184611 48184664 -128789476 - HERVK22 LTR ERVK -4292 2545 2493 * 502 98 24 12 chrX 48184656 48184738 -128789402 - HERVK22 LTR ERVK -3930 2907 2825 250 146 0 0 chrX 48184814 48184855 -128789285 - HERVK22 LTR ERVK -4470 2367 2327 3753 149 12 29 chrX 48185315 48186007 -128788133 - HERVK22 LTR ERVK -6149 688 9 1550 178 17 126 chrX 48186164 48186703 -128787437 - LTR22B LTR ERVK -12 480 1 7594 190 50 22 chrX 48186703 48187871 -128786269 + L1MA3 LINE L1 3174 4308 -3257 1345 43 0 0 chrX 48187871 48188032 -128786108 - L1PA3 LINE L1 -3 6152 5992 7594 190 50 22 chrX 48188032 48188096 -128786044 + L1MA3 LINE L1 4308 4369 -3196 1891 158 150 3 chrX 48188096 48188469 -128785671 + MSTA LTR MaLR 1 428 0 7594 190 50 22 chrX 48188469 48189204 -128784936 + L1MA3 LINE L1 4369 5082 -2483 1847 121 76 0 chrX 48189204 48189468 -128784672 + AluSc SINE Alu 1 284 -25 324 0 0 0 chrX 48189470 48189506 -128784634 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 7594 190 50 22 chrX 48189506 48189983 -128784157 + L1MA3 LINE L1 5082 5683 -1882 22489 32 7 0 chrX 48189983 48193474 -128780666 + L1PA2 LINE L1 2660 6155 0 7594 190 50 22 chrX 48193474 48193646 -128780494 + L1MA3 LINE L1 5683 5849 -1716 5375 139 14 14 chrX 48193647 48194611 -128779529 + L1MA3 LINE L1 6761 7724 0 289 51 0 0 chrX 48194645 48194684 -128779456 - MADE1 DNA Mariner 0 80 42 4217 83 5 0 chrX 48195158 48195738 -128778402 + L1PB1 LINE L1 5569 6151 0 2074 118 7 3 chrX 48195769 48196065 -128778075 - AluSx SINE Alu -14 298 2 446 138 0 0 chrX 48197333 48197413 -128776727 + L1MA6 LINE L1 6220 6299 -1 189 298 70 0 chrX 48198150 48198207 -128775933 - MIR SINE MIR -6 256 196 276 308 128 23 chrX 48198440 48198573 -128775567 - L2 LINE L2 -4 3309 3163 4869 155 33 11 chrX 48198713 48199783 -128774357 - L1PA15 LINE L1 -6 6159 5058 318 109 0 0 chrX 48199784 48199830 -128774310 + LTR19A LTR ERV1 1 46 -440 7509 119 14 2 chrX 48199844 48201825 -128772315 - L1PA8 LINE L1 -1 6171 4178 5915 125 9 19 chrX 48201826 48202851 -128771289 - L1PA8 LINE L1 -2061 4085 3072 13263 120 11 1 chrX 48202860 48205707 -128768433 - L1PA7 LINE L1 0 6469 3595 6447 115 10 10 chrX 48205707 48206696 -128767444 - L1PA7 LINE L1 -5472 989 1 539 191 127 8 chrX 48206698 48206824 -128767316 - Tigger4(Zombi) DNA MER2_type -2590 141 1 4906 155 29 22 chrX 48206940 48207860 -128766280 + L1PA8 LINE L1 6 932 -5529 2452 129 2 17 chrX 48207987 48208390 -128765750 + L1PA8 LINE L1 930 1326 -5135 * 9973 123 16 0 chrX 48208385 48210113 -128764027 + L1PA8 LINE L1 3987 5744 -743 36373 88 8 2 chrX 48210113 48216227 -128757913 + L1PA5 LINE L1 5 6154 0 5235 99 1 21 chrX 48216235 48217009 -128757131 + L1PA8 LINE L1 5728 6486 -1 309 241 105 38 chrX 48217074 48217207 -128756933 + L1ME4a LINE L1 5968 6109 -12 1580 245 45 84 chrX 48217548 48218259 -128755881 + LTR8 LTR ERV1 1 683 -8 22 35 0 0 chrX 48218295 48218324 -128755816 + AT_rich Low_complexity Low_complexity 1 29 0 40694 50 3 2 chrX 48218350 48224497 -128749643 + L1PA3 LINE L1 2 6152 -3 467 289 100 15 chrX 48224555 48224894 -128749246 + L1M4 LINE L1 2110 2477 -3669 1728 167 3 10 chrX 48224999 48225312 -128748828 + AluJb SINE Alu 9 319 0 1492 208 0 42 chrX 48225456 48225591 -128748549 + AluJo SINE Alu 1 140 -172 2110 125 0 13 chrX 48225591 48225903 -128748237 + AluSx SINE Alu 1 308 -4 1492 208 0 42 chrX 48225903 48226079 -128748061 + AluJo SINE Alu 140 299 -13 668 244 96 78 chrX 48226362 48226402 -128747738 + L1M4 LINE L1 3591 3629 -2517 1725 164 3 23 chrX 48226402 48226701 -128747439 - AluJb SINE Alu -19 293 1 668 244 96 78 chrX 48226701 48227014 -128747126 + L1M4 LINE L1 3629 3956 -2190 1620 183 28 7 chrX 48227014 48227304 -128746836 + AluJb SINE Alu 1 296 -16 668 244 96 78 chrX 48227304 48227399 -128746741 + L1M4 LINE L1 3956 4048 -2098 1300 165 30 22 chrX 48227401 48227668 -128746472 - AluJo SINE Alu -6 306 38 28 0 0 0 chrX 48228003 48228031 -128746109 + AT_rich Low_complexity Low_complexity 1 28 0 14716 39 6 4 chrX 48228031 48230621 -128743519 - L1PA3 LINE L1 -3 6152 3559 2310 92 19 6 chrX 48231579 48231904 -128742236 + L1PA8A LINE L1 5801 6129 -2 2041 107 11 7 chrX 48232454 48232787 -128741353 - AluY SINE Alu 0 335 2 297 219 70 62 chrX 48232855 48232983 -128741157 - MIR SINE MIR -74 188 60 4097 271 41 61 chrX 48233373 48235302 -128738838 + L1MA8 LINE L1 1 1920 -5110 371 261 0 0 chrX 48235292 48235403 -128738737 + L1MA8 LINE L1 3724 3834 -3272 * 692 259 5 10 chrX 48235417 48235610 -128738530 + L1PB1 LINE L1 6 197 -6666 * 7830 195 70 19 chrX 48235607 48238585 -128735555 + L1PB1 LINE L1 1392 4760 -2107 1785 160 0 26 chrX 48238585 48238891 -128735249 + AluSx SINE Alu 1 298 -14 7830 195 70 19 chrX 48238891 48241111 -128733029 + L1PB1 LINE L1 4760 6866 -1 23 0 0 0 chrX 48241111 48241134 -128733006 + AT_rich Low_complexity Low_complexity 1 23 0 35 0 0 0 chrX 48241264 48241299 -128732841 + AT_rich Low_complexity Low_complexity 1 35 0 10101 189 25 13 chrX 48241299 48244517 -128729623 + L1MA8 LINE L1 3820 7080 -171 2019 125 0 3 chrX 48244517 48244806 -128729334 + AluSx SINE Alu 11 298 -14 24 53 0 0 chrX 48244874 48244912 -128729228 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chrX 48244945 48244968 -128729172 + AT_rich Low_complexity Low_complexity 1 23 0 2789 248 77 22 chrX 48245751 48247195 -128726945 + L1MDa LINE L1 21 1769 -4771 942 179 111 28 chrX 48247203 48247527 -128726613 + L1MDa LINE L1 1983 2333 -4207 1849 111 49 8 chrX 48247542 48247924 -128726216 + LTR7 LTR ERV1 1 450 0 1801 197 42 26 chrX 48247924 48248376 -128725764 + HERVH LTR ERV1 1 459 -7254 15713 139 8 22 chrX 48248434 48251263 -128722877 + HERVH LTR ERV1 800 3587 -4126 6677 131 5 4 chrX 48251266 48252509 -128721631 + HERVH LTR ERV1 3840 5286 -1805 2664 111 7 11 chrX 48252513 48252946 -128721194 + HERVH LTR ERV1 7283 7713 0 1981 104 33 8 chrX 48252946 48253336 -128720804 + LTR7 LTR ERV1 1 450 0 306 125 0 0 chrX 48253354 48253402 -128720738 + (TA)n Simple_repeat Simple_repeat 1 48 0 2068 229 42 9 chrX 48253403 48254396 -128719744 + L1MDa LINE L1 2344 3372 -3168 445 35 0 0 chrX 48254396 48254453 -128719687 + L1MA2 LINE L1 6199 6255 -49 953 185 15 0 chrX 48254465 48254660 -128719480 + L1PBa LINE L1 3 200 -6663 10620 181 66 13 chrX 48254660 48259140 -128715000 + L1PBa LINE L1 634 5352 -1510 5475 164 19 100 chrX 48259147 48260445 -128713695 + L1PB1 LINE L1 3593 4994 -1157 6018 53 1 0 chrX 48259640 48260444 -128713696 - L1PA4 LINE L1 -3548 2598 1794 21538 52 7 0 chrX 48260445 48263985 -128710155 + L1PA4 LINE L1 2608 6155 0 9969 67 7 1 chrX 48263988 48266070 -128708070 + L1PA5 LINE L1 4068 6154 0 5475 164 19 100 chrX 48266070 48267578 -128706562 + L1PB1 LINE L1 4996 6151 0 320 111 0 0 chrX 48267589 48267643 -128706497 + L1MA1 LINE L1 6245 6298 -4 207 0 0 0 chrX 48267691 48267714 -128706426 + (A)n Simple_repeat Simple_repeat 1 23 0 346 327 41 28 chrX 48267714 48268102 -128706038 + L1M4 LINE L1 2963 3355 -2791 310 29 0 0 chrX 48318240 48318275 -128655865 + L1PA4 LINE L1 6107 6141 -14 464 304 7 15 chrX 48318309 48318444 -128655696 + MER5B DNA MER1_type 5 138 -40 1100 222 66 40 chrX 48318447 48318871 -128655269 - L1MC5 LINE L1 -32 7929 7495 625 256 27 58 chrX 48318875 48319098 -128655042 + MLT1D LTR MaLR 2 217 -288 264 233 0 0 chrX 48319174 48319247 -128654893 + (CA)n Simple_repeat Simple_repeat 2 74 0 342 275 58 47 chrX 48319284 48319455 -128654685 - MIR SINE MIR -50 212 40 362 250 227 19 chrX 48319642 48319858 -128654282 - MIR SINE MIR 0 262 2 220 291 12 35 chrX 48320801 48320887 -128653253 + MIR SINE MIR 34 117 -91 797 21 11 88 chrX 48320890 48321277 -128652863 + (TA)n Simple_repeat Simple_repeat 1 357 0 2145 110 0 17 chrX 48321277 48321567 -128652573 - AluSx SINE Alu -27 285 1 1410 59 0 0 chrX 48321630 48321799 -128652341 - AluY SINE Alu -17 294 126 2568 46 0 0 chrX 48321801 48322107 -128652033 - AluY SINE Alu -5 306 1 729 177 9 0 chrX 48322637 48322750 -128651390 + MER81 DNA DNA 1 114 0 298 232 121 0 chrX 48323239 48323338 -128650802 - L1ME2 LINE L1 -10 6154 6044 2438 207 58 20 chrX 48323344 48323880 -128650260 + MER68 LTR ERV1 1 556 -6 1080 198 36 40 chrX 48323887 48324165 -128649975 - L1ME2 LINE L1 -125 6039 5763 2610 102 3 11 chrX 48324165 48324518 -128649622 - L1PB1 LINE L1 0 6151 5802 1396 99 25 10 chrX 48324518 48324720 -128649420 - THE1B LTR MaLR -159 205 1 10279 129 52 3 chrX 48324720 48326226 -128647914 - THE1B-int LTR MaLR 0 1580 1 2789 112 0 6 chrX 48326226 48326592 -128647548 - THE1B LTR MaLR 0 364 1 10919 177 91 24 chrX 48326600 48327077 -128647063 - L1PBa LINE L1 -1538 5324 4880 2095 150 0 6 chrX 48327077 48327390 -128646750 - AluSx SINE Alu -1 311 1 10919 177 91 24 chrX 48327390 48331355 -128642785 - L1PBa LINE L1 -1982 4880 591 656 298 15 49 chrX 48332187 48332452 -128641688 + MIR SINE MIR 7 262 0 281 338 110 36 chrX 48332461 48332961 -128641179 - L2 LINE L2 -1036 2278 1742 263 228 25 38 chrX 48334198 48334277 -128639863 - L2 LINE L2 -15 3298 3221 899 287 0 5 chrX 48334402 48334611 -128639529 - MIR SINE MIR -53 209 2 534 269 40 34 chrX 48334711 48334886 -128639254 - MIR SINE MIR -82 180 5 234 0 0 0 chrX 48335208 48335234 -128638906 + (CAT)n Simple_repeat Simple_repeat 3 28 0 27324 111 9 15 chrX 48335597 48341367 -128632773 + L1PA7 LINE L1 717 6466 -3 334 214 143 52 chrX 48341455 48341578 -128632562 + MIR SINE MIR 39 143 -65 390 299 45 19 chrX 48341823 48341948 -128632192 + MIR SINE MIR 23 154 -108 406 169 39 0 chrX 48341948 48342025 -128632115 - MADE1 DNA Mariner 0 80 1 390 299 45 19 chrX 48342025 48342056 -128632084 + MIR SINE MIR 154 183 -79 596 219 104 45 chrX 48342058 48342259 -128631881 + MLT1G1 LTR MaLR 1 213 -336 432 232 80 24 chrX 48342269 48342394 -128631746 - MIR SINE MIR -108 154 23 620 224 154 31 chrX 48342674 48342902 -128631238 + MLT1G1 LTR MaLR 300 595 0 188 211 26 0 chrX 48343335 48343373 -128630767 - L2 LINE L2 -16 3297 3259 * 453 121 0 72 chrX 48343360 48343443 -128630697 - MIR SINE MIR -80 182 106 548 341 29 16 chrX 48343647 48343893 -128630247 + MIR SINE MIR 13 261 -1 1266 203 66 87 chrX 48345698 48345812 -128628328 + LTR37B LTR ERV1 7 122 -346 621 236 33 107 chrX 48345812 48346054 -128628086 - MER58A DNA MER1_type 0 224 1 1266 203 66 87 chrX 48346054 48346411 -128627729 + LTR37B LTR ERV1 122 468 0 398 357 141 12 chrX 48347030 48347285 -128626855 - L3 LINE CR1 -13 1564 1277 324 256 12 47 chrX 48347501 48347587 -128626553 - MIR SINE MIR -103 105 23 229 213 0 0 chrX 48347588 48347635 -128626505 + (TATG)n Simple_repeat Simple_repeat 4 50 0 442 345 83 9 chrX 48347913 48348142 -128625998 + MIR SINE MIR 5 250 -12 505 305 52 11 chrX 48348155 48348329 -128625811 - MIR3 SINE MIR -13 195 15 945 188 44 0 chrX 48348335 48348516 -128625624 + MER5A DNA MER1_type 1 189 0 410 326 14 7 chrX 48348808 48348955 -128625185 - L3 LINE CR1 -19 1558 1411 506 281 94 6 chrX 48349122 48349293 -128624847 - MIR3 SINE MIR 0 208 23 1130 151 77 182 chrX 48349730 48350054 -128624086 + AluJo SINE Alu 1 290 -12 520 240 51 31 chrX 48350081 48350291 -128623849 + MER20B DNA MER1_type 1 218 -1 1138 163 25 0 chrX 48350296 48350498 -128623642 + MER3 DNA MER1_type 2 208 -1 357 242 99 87 chrX 48351321 48351482 -128622658 - MIR SINE MIR -98 164 2 428 236 9 19 chrX 48351684 48351790 -128622350 - MIR SINE MIR -65 143 39 238 324 40 14 chrX 48351809 48351883 -128622257 + MIR SINE MIR 23 98 -164 738 255 60 130 chrX 48351955 48352550 -128621590 - L2 LINE L2 -4 3268 2712 635 261 0 13 chrX 48352555 48352712 -128621428 + MIR SINE MIR 100 254 -8 833 198 13 0 chrX 48352864 48353021 -128621119 + L1PB4 LINE L1 5995 6153 -3 686 247 6 6 chrX 48353753 48353911 -128620229 + MER97b DNA MER1_type? 2 159 -894 2048 181 79 24 chrX 48353913 48354322 -128619818 - L1MC/D LINE L1 -604 5755 5295 1135 205 48 26 chrX 48354322 48354551 -128619589 - MER8 DNA MER2_type -3 236 3 2048 181 79 24 chrX 48354551 48354736 -128619404 - L1MC/D LINE L1 -1064 5295 5122 6926 59 11 0 chrX 48354737 48356141 -128617999 - L1PA7 LINE L1 -2 6152 4737 469 135 0 11 chrX 48356142 48356231 -128617909 - L1P LINE L1 -745 5463 5376 1088 91 23 0 chrX 48356235 48356411 -128617729 + (TTC)n Simple_repeat Simple_repeat 1 180 0 366 156 0 0 chrX 48356411 48356475 -128617665 + CT-rich Low_complexity Low_complexity 3 66 0 1730 197 3 16 chrX 48356479 48356794 -128617346 - AluSx SINE Alu -1 311 1 12904 195 31 7 chrX 48356794 48361695 -128612445 - L1PBb LINE L1 -815 5388 367 534 218 57 0 chrX 48361700 48361824 -128612316 - L1PBa LINE L1 -5216 1647 1517 590 293 51 12 chrX 48361887 48362143 -128611997 - L1M4 LINE L1 -2614 3532 3267 27409 125 18 64 chrX 48362151 48367626 -128606514 + L1P LINE L1 12 5233 -913 22351 133 14 126 chrX 48367630 48371730 -128602410 - L1P3 LINE L1 -620 5534 977 1901 70 0 12 chrX 48371730 48371972 -128602168 - AluY SINE Alu 0 311 73 22351 133 14 126 chrX 48371972 48373732 -128600408 - L1P3 LINE L1 -5177 977 434 205 50 25 25 chrX 48373732 48373772 -128600368 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 22351 133 14 126 chrX 48373772 48374154 -128599986 - L1P3 LINE L1 -5720 434 11 297 0 0 0 chrX 48374183 48374216 -128599924 + (CA)n Simple_repeat Simple_repeat 1 33 0 186 43 0 0 chrX 48374286 48374309 -128599831 + (TAGA)n Simple_repeat Simple_repeat 3 25 0 1552 246 51 16 chrX 48374402 48375045 -128599095 - L1M4 LINE L1 -2952 3194 2529 429 145 40 40 chrX 48375047 48375171 -128598969 - Tigger3b DNA MER2_type -424 807 684 2415 151 21 14 chrX 48375171 48375602 -128598538 + MER57B LTR ERV1 1 434 0 3292 167 7 15 chrX 48375602 48376202 -128597938 + MER57B-int LTR ERV1 1 595 -6942 * 5931 131 18 5 chrX 48376198 48377241 -128596899 + MER57B-int LTR ERV1 3829 4885 -2652 8486 57 1 0 chrX 48377241 48378398 -128595742 - L1P LINE L1 -2787 3359 2202 7357 34 1 0 chrX 48378412 48380018 -128594122 - L1PA3 LINE L1 -5 6150 4538 * 9186 45 6 1 chrX 48380017 48381920 -128592220 + L1PA4 LINE L1 4238 6142 -13 468 106 0 0 chrX 48381920 48382005 -128592135 + (TA)n Simple_repeat Simple_repeat 1 85 0 13934 105 18 4 chrX 48382005 48384231 -128589909 + MER57B-int LTR ERV1 4887 7147 -390 724 102 23 31 chrX 48384232 48384360 -128589780 + LTR54B LTR ERV1 5 131 -367 1655 56 121 0 chrX 48384360 48384591 -128589549 + MER57B-int LTR ERV1 7279 7537 0 2724 129 19 2 chrX 48384591 48385018 -128589122 + MER57B LTR ERV1 1 434 0 3439 123 81 26 chrX 48385018 48385179 -128588961 - Tigger3b DNA MER2_type -2341 687 536 1915 174 0 6 chrX 48385179 48385490 -128588650 + AluJo SINE Alu 1 309 -3 3439 123 81 26 chrX 48385490 48385979 -128588161 - Tigger3b DNA MER2_type -2492 536 1 219 204 0 0 chrX 48385983 48386032 -128588108 + (TG)n Simple_repeat Simple_repeat 2 50 0 272 315 31 8 chrX 48386269 48386399 -128587741 - L1ME LINE L1 -478 5643 5511 747 303 42 4 chrX 48386520 48386761 -128587379 + MLT1J LTR MaLR 20 269 -242 541 195 40 11 chrX 48386987 48387161 -128586979 - HsTC2 DNA Tc2 -3 1895 1717 658 249 0 73 chrX 48387172 48387405 -128586735 - HsTC2 DNA Tc2 -1590 308 93 805 278 24 27 chrX 48387538 48387833 -128586307 + L1MEc LINE L1 361 654 -6067 386 182 0 64 chrX 48388239 48388349 -128585791 + L1MEc LINE L1 1072 1174 -5547 1306 264 44 4 chrX 48388359 48388817 -128585323 - L1MEc LINE L1 -3291 2924 2449 582 262 96 19 chrX 48388803 48389166 -128584974 - L1MEc LINE L1 -5128 1268 878 * 5747 194 66 2 chrX 48389167 48390577 -128583563 + L1MB1 LINE L1 3120 4619 -1527 2451 230 12 1 chrX 48390621 48391272 -128582868 + L1MB1 LINE L1 4726 5383 -763 22 0 0 0 chrX 48391272 48391294 -128582846 + AT_rich Low_complexity Low_complexity 1 22 0 2789 147 67 0 chrX 48391294 48391804 -128582336 + L1MB1 LINE L1 5621 6164 -4 390 42 0 0 chrX 48391804 48391852 -128582288 + (TTAAA)n Simple_repeat Simple_repeat 3 50 0 322 250 70 41 chrX 48391865 48392037 -128582103 + L1MEc LINE L1 1533 1709 -4831 791 281 33 6 chrX 48392091 48392426 -128581714 + L1MEc LINE L1 1860 2203 -4518 852 203 46 0 chrX 48392437 48392634 -128581506 + L1MEc LINE L1 2257 2462 -4259 364 149 0 40 chrX 48392631 48392705 -128581435 + L1MD3 LINE L1 7732 7802 -193 * 1879 214 99 21 chrX 48392708 48393255 -128580885 + L1M4 LINE L1 4566 5169 -977 1710 179 13 13 chrX 48393255 48393567 -128580573 + AluJo SINE Alu 1 312 0 1879 214 99 21 chrX 48393567 48393642 -128580498 + L1M4 LINE L1 5169 5237 -909 1274 208 14 27 chrX 48393743 48394037 -128580103 + AluJo SINE Alu 23 312 0 3255 227 21 6 chrX 48394048 48395026 -128579114 + L1MB7 LINE L1 5172 6164 -20 189 0 0 0 chrX 48395226 48395247 -128578893 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 243 324 14 0 chrX 48395749 48395823 -128578317 - MIR3 SINE MIR -52 156 82 190 250 0 19 chrX 48396100 48396152 -128577988 - L2 LINE L2 -1 3312 3262 595 263 37 19 chrX 48396187 48396405 -128577735 - MIR SINE MIR 0 262 42 1289 183 25 113 chrX 48396839 48397239 -128576901 - MLT1A1 LTR MaLR 0 365 1 626 264 104 40 chrX 48397574 48397642 -128576498 - L2 LINE L2 -747 2567 2505 958 202 5 5 chrX 48397642 48397830 -128576310 + MER5A DNA MER1_type 1 188 -1 626 264 104 40 chrX 48397830 48398060 -128576080 - L2 LINE L2 -809 2505 2250 519 168 0 0 chrX 48398526 48398621 -128575519 + GA-rich Low_complexity Low_complexity 1 95 0 321 321 95 41 chrX 48398713 48398956 -128575184 - L2 LINE L2 -206 3066 2811 527 251 27 23 chrX 48399037 48399256 -128574884 + MER112 DNA MER1_type 35 254 -6 363 340 99 46 chrX 48399265 48399870 -128574270 - L2 LINE L2 -556 2758 2122 464 200 58 25 chrX 48400689 48400809 -128573331 + MIR SINE MIR 74 197 -65 1630 214 126 30 chrX 48401047 48402940 -128571200 - L1MDa LINE L1 -3691 2849 601 234 0 0 0 chrX 48403040 48403066 -128571074 + (A)n Simple_repeat Simple_repeat 1 26 0 327 253 153 41 chrX 48403151 48403321 -128570819 + MIR SINE MIR 68 256 -6 182 305 34 85 chrX 48405079 48405197 -128568943 - L2 LINE L2 0 3272 3161 2038 111 7 14 chrX 48405571 48405868 -128568272 - AluSx SINE Alu -17 295 1 311 323 30 8 chrX 48406143 48406276 -128567864 + MIR SINE MIR 114 249 -13 185 313 83 42 chrX 48406319 48406415 -128567725 - L3b LINE CR1 -121 1462 1363 376 318 69 26 chrX 48406570 48406759 -128567381 - MIR SINE MIR -18 244 48 22 0 0 0 chrX 48406803 48406825 -128567315 + AT_rich Low_complexity Low_complexity 1 22 0 391 202 128 9 chrX 48407165 48407274 -128566866 - MIR SINE MIR -68 140 19 383 354 8 23 chrX 48408230 48408360 -128565780 - L2 LINE L2 -5 3267 3140 1304 191 0 70 chrX 48408588 48408861 -128565279 - MIR SINE MIR -6 256 3 1537 282 66 28 chrX 48408868 48409680 -128564460 - L2 LINE L2 -89 3224 2384 238 253 202 73 chrX 48409676 48409854 -128564286 - MIR3 SINE MIR -7 201 1 * 189 282 12 71 chrX 48410438 48410523 -128563617 + MIR SINE MIR 162 241 -21 537 272 91 16 chrX 48411163 48411406 -128562734 + MIR SINE MIR 2 262 0 1314 190 7 11 chrX 48412018 48412297 -128561843 - L1PB4 LINE L1 -14 6142 5865 2537 191 22 73 chrX 48412297 48412992 -128561148 - LTR8 LTR ERV1 -2 689 31 3073 132 38 2 chrX 48413050 48413581 -128560559 - L1PB4 LINE L1 -286 5870 5321 253 370 71 8 chrX 48413581 48413708 -128560432 - L2 LINE L2 -51 3221 3087 4736 183 46 46 chrX 48414894 48414985 -128559155 + L1MD1 LINE L1 4549 4638 -1604 2526 65 0 3 chrX 48414985 48415294 -128558846 - AluY SINE Alu -3 308 1 4736 183 46 46 chrX 48415294 48415800 -128558340 + L1MD1 LINE L1 4638 5142 -1100 8103 34 17 0 chrX 48415800 48417563 -128556577 - L1PA4 LINE L1 0 6155 4376 4736 183 46 46 chrX 48417563 48418659 -128555481 + L1MD1 LINE L1 5142 6231 -11 427 224 10 10 chrX 48418668 48418766 -128555374 + MER96B DNA MER1_type? 320 417 0 443 228 18 90 chrX 48419037 48419204 -128554936 + MIR SINE MIR 10 164 -98 658 223 0 0 chrX 48419499 48419629 -128554511 + FLAM_A SINE Alu 4 133 0 2616 169 48 24 chrX 48419669 48420256 -128553884 + L1MB7 LINE L1 5573 6173 -11 694 146 111 18 chrX 48421133 48421304 -128552836 + MER53 DNA DNA 1 187 -2 1341 226 102 6 chrX 48421434 48421766 -128552374 + MLT1A1 LTR MaLR 1 364 -1 519 299 113 0 chrX 48421854 48422048 -128552092 - MIR SINE MIR 0 262 47 879 236 28 4 chrX 48422202 48422456 -128551684 - MIR SINE MIR 0 262 3 22 0 0 0 chrX 48422499 48422521 -128551619 + AT_rich Low_complexity Low_complexity 1 22 0 4673 238 57 31 chrX 48423204 48423434 -128550706 + L1M4 LINE L1 1 224 -6420 1861 151 24 0 chrX 48423434 48423726 -128550414 - AluJb SINE Alu -13 299 1 4673 238 57 31 chrX 48423726 48425681 -128548459 + L1M4 LINE L1 224 2412 -4232 1450 221 0 33 chrX 48425681 48425984 -128548156 - AluJb SINE Alu -19 293 1 4673 238 57 31 chrX 48425984 48426588 -128547552 + L1M4 LINE L1 2412 2999 -3645 1524 228 55 51 chrX 48426597 48427203 -128546937 - L1M4 LINE L1 -3404 2742 2135 11718 153 17 119 chrX 48427213 48430381 -128543759 + L1P LINE L1 12 2855 -3291 8728 141 15 8 chrX 48430566 48432932 -128541208 + L1MA2 LINE L1 1827 4174 -3549 3038 30 0 33 chrX 48432932 48433286 -128540854 + L1PA4 LINE L1 5805 6153 -2 8728 141 15 8 chrX 48433286 48434367 -128539773 + L1MA2 LINE L1 4174 7675 -48 21131 68 3 9 chrX 48434373 48440368 -128533772 + L1PA5 LINE L1 2 6153 -1 768 163 48 27 chrX 48440395 48440542 -128533598 + MER30 DNA MER1_type 80 229 -1 1793 175 0 3 chrX 48440591 48440888 -128533252 - AluJb SINE Alu -16 296 1 1676 161 0 67 chrX 48441003 48441333 -128532807 + AluJo SINE Alu 1 308 -4 1079 282 73 22 chrX 48442268 48442676 -128531464 - MLT1J2 LTR MaLR -7 443 15 2691 174 106 6 chrX 48442781 48443321 -128530819 + L1MB5 LINE L1 5581 6174 0 381 136 0 0 chrX 48443601 48443660 -128530480 + L1MA2 LINE L1 6246 6304 0 10487 40 0 0 chrX 48443979 48445223 -128528917 + L1P LINE L1 3764 5007 -1139 5570 41 17 5 chrX 48445323 48445979 -128528161 + SVA Other Other 721 1384 -2 275 93 111 0 chrX 48445981 48446035 -128528105 - MER53 DNA DNA -84 105 46 17679 103 2 1 chrX 48446042 48446502 -128527638 + L1PA5 LINE L1 2840 3298 -2856 2282 108 0 0 chrX 48446502 48446798 -128527342 + AluY SINE Alu 1 296 -15 17679 103 2 1 chrX 48446798 48449627 -128524513 + L1PA5 LINE L1 3298 6153 -1 468 193 84 0 chrX 48449627 48449710 -128524430 - Tigger3(Golem) DNA MER2_type -2939 90 1 468 232 116 25 chrX 48449712 48449910 -128524230 - HAL1b LINE L1 -421 927 712 545 205 26 26 chrX 48449919 48450036 -128524104 + L2 LINE L2 3186 3302 -11 3044 149 51 35 chrX 48450050 48450620 -128523520 - L1M4c LINE L1 -5448 936 358 6038 159 10 12 chrX 48450620 48452019 -128522121 + L1MA4 LINE L1 4900 6294 -6 2029 164 6 20 chrX 48452044 48452391 -128521749 - L1M4c LINE L1 -6019 365 24 2365 208 13 24 chrX 48452391 48452848 -128521292 + LTR40a LTR ERVL 68 519 0 595 290 70 19 chrX 48454038 48454252 -128519888 - MIR SINE MIR -34 228 4 2320 85 0 7 chrX 48454609 48454904 -128519236 - AluSc SINE Alu 0 309 17 1153 91 19 0 chrX 48455007 48455202 -128518938 + AluSg/x SINE Alu 156 353 0 228 206 151 0 chrX 48455568 48455641 -128518499 - MLT1I LTR MaLR -8 401 318 412 234 38 120 chrX 48455730 48455939 -128518201 - MLT1J LTR MaLR -212 299 108 1994 267 56 30 chrX 48456202 48456775 -128517365 + MLT1E LTR MaLR 1 588 -5 473 272 83 39 chrX 48456897 48457077 -128517063 + L3 LINE CR1 1370 1557 -20 471 228 18 120 chrX 48457306 48457473 -128516667 + MER5A DNA MER1_type 4 153 -36 446 298 122 11 chrX 48457479 48457667 -128516473 + MIR SINE MIR 48 256 -6 213 185 0 37 chrX 48458293 48458347 -128515793 - L2 LINE L2 0 3313 3262 357 274 30 54 chrX 48459005 48459173 -128514967 + MLT1J LTR MaLR 1 164 -347 259 284 23 11 chrX 48459146 48459234 -128514906 + MLT1L LTR MaLR 201 289 -326 * 249 0 0 0 chrX 48460865 48460893 -128513247 - tRNA-Gly-GGG tRNA tRNA -46 28 1 1020 174 47 8 chrX 48460899 48461134 -128513006 + L1PA16 LINE L1 5155 5398 -748 24474 118 61 78 chrX 48461144 48465834 -128508306 + L1PA7 LINE L1 12 4621 -1525 2066 96 0 0 chrX 48465825 48466116 -128508024 - L1P LINE L1 -1253 4893 4603 * 2017 83 0 0 chrX 48466116 48466370 -128507770 - L1P LINE L1 -1847 4299 4046 6706 65 1 4 chrX 48466370 48467173 -128506967 + L1PA7 LINE L1 5347 6149 -5 3957 144 25 25 chrX 48467173 48467467 -128506673 + L1PA16 LINE L1 5393 5686 -480 192 40 0 0 chrX 48467467 48467492 -128506648 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3957 144 25 25 chrX 48467492 48467864 -128506276 + L1PA16 LINE L1 5685 6059 -107 336 176 0 0 chrX 48467867 48467935 -128506205 + L1PA16 LINE L1 6099 6166 0 1215 173 13 9 chrX 48468044 48468269 -128505871 - AluJo SINE Alu -1 311 86 2442 64 3 0 chrX 48469335 48469631 -128504509 + AluY SINE Alu 1 297 -14 237 370 65 48 chrX 48470102 48470515 -128503625 - L2 LINE L2 -458 2856 2437 252 59 0 0 chrX 48471062 48471096 -128503044 + (CTAG)n Simple_repeat Simple_repeat 3 36 0 761 175 0 8 chrX 48471154 48471280 -128502860 - L2 LINE L2 0 3313 3189 2026 126 28 0 chrX 48471443 48471728 -128502412 - AluSg SINE Alu -17 293 1 918 335 102 35 chrX 48471789 48472836 -128501304 - L2 LINE L2 -943 2371 1255 1865 151 26 10 chrX 48473015 48473319 -128500821 - AluJo SINE Alu -3 309 1 1984 195 77 39 chrX 48473558 48474025 -128500115 + MER31A LTR ERV1 1 485 0 278 320 45 81 chrX 48474055 48474355 -128499785 + L2 LINE L2 2776 3062 -210 662 246 118 81 chrX 48474466 48474812 -128499328 + LTR68 LTR ERV1 240 598 -142 232 268 87 22 chrX 48474844 48474982 -128499158 + MER67C LTR ERV1 546 692 -18 441 54 0 0 chrX 48475629 48475685 -128498455 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2076 131 3 0 chrX 48475685 48475983 -128498157 - AluSx SINE Alu -13 299 1 22 0 0 0 chrX 48476068 48476090 -128498050 + AT_rich Low_complexity Low_complexity 1 22 0 706 239 39 85 chrX 48476539 48476713 -128497427 - MIR SINE MIR 0 262 102 2303 100 7 0 chrX 48476713 48477014 -128497126 + AluSx SINE Alu 1 303 -9 706 239 39 85 chrX 48477014 48477099 -128497041 - MIR SINE MIR -160 102 15 246 302 103 17 chrX 48477097 48477213 -128496927 - L2 LINE L2 -582 2732 2607 * 194 308 66 22 chrX 48477246 48477337 -128496803 - L2 LINE L2 -562 2752 2658 307 290 179 60 chrX 48477543 48477929 -128496211 - L1M2 LINE L1 -5891 958 527 27 0 0 0 chrX 48478728 48478755 -128495385 + AT_rich Low_complexity Low_complexity 1 27 0 1493 277 72 11 chrX 48681073 48681785 -128292355 - L1M1 LINE L1 -2597 4968 4214 2282 138 19 21 chrX 48681804 48682180 -128291960 - THE1C LTR MaLR 0 375 1 4605 127 6 1 chrX 48682181 48682853 -128291287 - THE1C-int LTR MaLR -1 1579 905 454 276 8 0 chrX 48682868 48683002 -128291138 - L1PA15-16 LINE L1 -4117 2732 2598 * 5288 146 66 23 chrX 48682992 48683115 -128291025 - L1PA16 LINE L1 0 6166 6050 2026 136 3 13 chrX 48683115 48683417 -128290723 + AluSx SINE Alu 1 299 -13 5288 146 66 23 chrX 48683417 48683986 -128290154 - L1PA16 LINE L1 -116 6050 5507 2589 36 0 0 chrX 48683986 48684288 -128289852 - AluY SINE Alu -9 302 1 5288 146 66 23 chrX 48684288 48684764 -128289376 - L1PA16 LINE L1 -659 5507 4920 7572 28 0 1 chrX 48684765 48686109 -128288031 + L1PA3 LINE L1 4810 6152 -3 1645 236 41 2 chrX 48686115 48686531 -128287609 + L1 LINE L1 4487 4918 -1228 788 163 0 0 chrX 48686558 48686687 -128287453 - THE1-int LTR MaLR -676 904 776 1608 132 4 16 chrX 48686693 48686951 -128287189 - THE1C LTR MaLR -120 255 1 3130 276 47 14 chrX 48686977 48688914 -128285226 - L1PA12 LINE L1 -3394 4190 2182 2128 124 7 0 chrX 48689005 48689341 -128284799 - AluSg SINE Alu 0 338 1 602 379 40 32 chrX 48689696 48690226 -128283914 - L1PA12 LINE L1 -6174 1400 867 6644 257 53 42 chrX 48690303 48693149 -128280991 - L1M1 LINE L1 -3957 3608 17 2096 246 45 95 chrX 48693165 48693928 -128280212 + MER31B-int LTR ERV1 2460 3142 -1794 1735 160 58 25 chrX 48693928 48694290 -128279850 + THE1C LTR MaLR 1 374 -1 2096 246 45 95 chrX 48694290 48694742 -128279398 + MER31B-int LTR ERV1 3142 3615 -1321 571 231 50 63 chrX 48694753 48694974 -128279166 + MER31B-int LTR ERV1 4116 4333 -603 356 262 87 0 chrX 48695053 48695156 -128278984 + MER31B-int LTR ERV1 4359 4470 -466 798 255 45 69 chrX 48695447 48695780 -128278360 + MER31B-int LTR ERV1 4572 4896 -40 438 321 39 33 chrX 48695801 48696149 -128277991 + MER31B LTR ERV1 5 464 -2 1189 278 54 13 chrX 48696150 48696687 -128277453 + L1M4 LINE L1 2250 2808 -3338 3673 266 39 25 chrX 48696734 48698555 -128275585 - L1M1 LINE L1 -4160 3008 1426 * 4300 120 3 14 chrX 48698538 48699205 -128274935 - L1PA13 LINE L1 -71 6092 5433 28 0 0 0 chrX 48699340 48699368 -128274772 + AT_rich Low_complexity Low_complexity 1 28 0 1395 259 36 181 chrX 48699378 48701058 -128273082 - L1M1 LINE L1 -5729 1439 4 1324 271 67 38 chrX 48701071 48701131 -128273009 - L1 LINE L1 -3617 3948 3891 1712 220 78 8 chrX 48701131 48701527 -128272613 + MSTB LTR MaLR 1 424 -2 1324 271 67 38 chrX 48701527 48702615 -128271525 - L1 LINE L1 -3674 3891 2799 1332 231 25 0 chrX 48702615 48702774 -128271366 - AluJb SINE Alu -24 288 118 300 53 0 0 chrX 48702774 48702812 -128271328 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1332 231 25 0 chrX 48702812 48702933 -128271207 - AluJb SINE Alu -194 118 1 1324 271 67 38 chrX 48702933 48703484 -128270656 - L1 LINE L1 -4766 2799 2265 6725 231 26 23 chrX 48703488 48705845 -128268295 - L1MA4 LINE L1 -11 6471 4102 3187 128 0 8 chrX 48705845 48706336 -128267804 + L1PB1 LINE L1 5662 6148 -3 6725 231 26 23 chrX 48706336 48707008 -128267132 - L1MA4 LINE L1 -2380 4102 3434 186 43 0 0 chrX 48707065 48707088 -128267052 + (TG)n Simple_repeat Simple_repeat 2 24 0 1945 187 5 3 chrX 48707652 48708026 -128266114 - L1PA16 LINE L1 -13 6153 5779 3575 243 19 20 chrX 48708026 48708185 -128265955 + L1 LINE L1 4238 4396 -1750 270 0 0 0 chrX 48708185 48708215 -128265925 + (CA)n Simple_repeat Simple_repeat 1 30 0 3575 243 19 20 chrX 48708215 48709169 -128264971 + L1 LINE L1 4396 5350 -796 506 270 43 11 chrX 48709164 48709535 -128264605 - L1MA4 LINE L1 -2888 3440 2982 * 3495 254 67 30 chrX 48709589 48710597 -128263543 - L1MA4 LINE L1 -3864 2464 1495 1953 136 14 10 chrX 48710597 48710891 -128263249 - AluSg SINE Alu -15 295 1 3495 254 67 30 chrX 48710891 48712215 -128261925 - L1MA4 LINE L1 -4833 1495 15 996 320 30 85 chrX 48712211 48712726 -128261414 - L1M3b LINE L1 -5029 1252 775 * 999 78 0 21 chrX 48712726 48712868 -128261272 + L1PA8 LINE L1 6031 6169 -3 996 320 30 85 chrX 48712868 48712961 -128261179 - L1M3b LINE L1 -5506 775 678 328 275 50 33 chrX 48713085 48713267 -128260873 - L1M3b LINE L1 -5518 763 579 * 8886 127 4 3 chrX 48713262 48714684 -128259456 - L1P3 LINE L1 -2633 3828 2405 * 10031 127 20 4 chrX 48714679 48716157 -128257983 - L1P3 LINE L1 -4960 1501 1 210 37 0 0 chrX 48716160 48716187 -128257953 + (TTG)n Simple_repeat Simple_repeat 2 28 0 536 248 99 0 chrX 48716187 48716464 -128257676 - L1MDa LINE L1 -3937 2603 2299 313 274 67 15 chrX 48716495 48716630 -128257510 - L1MDa LINE L1 -4366 2174 2033 9766 130 6 5 chrX 48716702 48718184 -128255956 + L1PA5 LINE L1 11 1493 -4653 23190 58 5 0 chrX 48718184 48721955 -128252185 + L1PA5 LINE L1 2364 6139 -15 243 316 77 0 chrX 48722025 48722142 -128251998 - L1MDa LINE L1 -4295 2245 2120 1484 224 32 3 chrX 48722273 48722648 -128251492 - L1MB2 LINE L1 -7 6164 5779 7973 246 40 18 chrX 48722712 48724004 -128250136 - L1PB4 LINE L1 -5 7570 6308 530 29 0 14 chrX 48724004 48724073 -128250067 + (CTATT)n Simple_repeat Simple_repeat 3 70 0 7973 246 40 18 chrX 48724073 48724797 -128249343 - L1PB4 LINE L1 -1267 6308 5602 1992 157 50 0 chrX 48724797 48725140 -128249000 - THE1B LTR MaLR 0 364 5 9454 131 36 32 chrX 48725144 48726719 -128247421 - THE1B-int LTR MaLR 0 1580 1 2113 163 22 0 chrX 48726719 48727075 -128247065 - THE1B LTR MaLR 0 364 1 7973 246 40 18 chrX 48727075 48728598 -128245542 - L1PB4 LINE L1 -1974 5601 3944 3421 157 211 38 chrX 48728700 48728766 -128245374 - L1PB4 LINE L1 -5733 1832 1779 612 81 0 0 chrX 48728766 48728853 -128245287 + (TC)n Simple_repeat Simple_repeat 2 88 0 3421 157 211 38 chrX 48728853 48729850 -128244290 - L1PB4 LINE L1 -5786 1779 243 2123 107 0 0 chrX 48730514 48730786 -128243354 + AluSp SINE Alu 3 274 -39 291 217 53 86 chrX 48731223 48731308 -128242832 + MLT1K LTR MaLR 442 521 -67 2143 131 0 0 chrX 48731308 48731605 -128242535 + AluSx SINE Alu 1 297 -15 291 217 53 86 chrX 48731605 48731671 -128242469 + MLT1K LTR MaLR 521 588 0 5269 184 16 16 chrX 48731690 48733450 -128240690 - L1PA16 LINE L1 -5 6161 4408 36925 94 8 8 chrX 48733488 48738425 -128235715 - L1PA6 LINE L1 -2 6152 1218 2490 71 0 0 chrX 48738425 48738722 -128235418 + AluY SINE Alu 1 297 -14 36925 94 8 8 chrX 48738722 48739939 -128234201 - L1PA6 LINE L1 -4936 1218 2 6014 234 32 43 chrX 48739943 48741862 -128232278 - L1 LINE L1 -1728 4418 2520 517 125 0 0 chrX 48741895 48741975 -128232165 - AluS SINE Alu -233 80 1 3357 131 2 2 chrX 48741975 48742495 -128231645 + Tigger1 DNA MER2_type 1573 2092 -326 729 249 24 68 chrX 48742496 48742789 -128231351 - LTR4 LTR ERV1 0 596 317 398 238 44 73 chrX 48743001 48743207 -128230933 - LTR4 LTR ERV1 -396 200 1 1613 204 54 3 chrX 48743213 48743526 -128230614 + Tigger1 DNA MER2_type 2084 2412 -6 1879 265 60 49 chrX 48744402 48744677 -128229463 - L1MDb LINE L1 -4818 1588 1317 318 26 0 0 chrX 48744677 48744716 -128229424 + (TG)n Simple_repeat Simple_repeat 2 40 0 1810 130 8 0 chrX 48744717 48744979 -128229161 - AluSq SINE Alu -7 306 43 1879 265 60 49 chrX 48744979 48745002 -128229138 - L1MDb LINE L1 -5089 1317 1296 1562 212 35 0 chrX 48745002 48745285 -128228855 + AluJb SINE Alu 1 293 -19 1879 265 60 49 chrX 48745285 48746398 -128227742 - L1MDb LINE L1 -5110 1296 67 249 301 12 12 chrX 48746402 48746485 -128227655 - L1MDb LINE L1 -6307 102 20 21 0 0 0 chrX 48746584 48746605 -128227535 + AT_rich Low_complexity Low_complexity 1 21 0 1725 195 42 12 chrX 48746617 48746950 -128227190 + MER61A LTR ERV1 1 343 0 2888 161 50 22 chrX 48746952 48747498 -128226642 + MER61A-int LTR ERV1 3 563 -4654 * 18272 116 19 17 chrX 48747483 48750817 -128223323 + MER61A-int LTR ERV1 1396 4819 -398 228 35 0 0 chrX 48750818 48750847 -128223293 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2455 101 3 3 chrX 48750847 48751192 -128222948 + MER61A-int LTR ERV1 4870 5214 -3 443 208 0 0 chrX 48751194 48751271 -128222869 + MER61A LTR ERV1 1 77 -266 2225 114 3 0 chrX 48751385 48751683 -128222457 - AluSp SINE Alu -14 299 1 1816 287 78 17 chrX 48751718 48752473 -128221667 + L1M4 LINE L1 5 805 -5737 566 294 127 6 chrX 48752470 48752831 -128221309 + L1 LINE L1 3297 3701 -2445 * 20139 52 4 3 chrX 48752830 48755423 -128218717 + L1P LINE L1 1336 3932 -2214 455 110 0 0 chrX 48755427 48755500 -128218640 - L1PA5 LINE L1 -95 6059 5987 5027 198 57 78 chrX 48755818 48757710 -128216430 + MER57-int LTR ERV1 1925 5758 -1587 28 29 0 0 chrX 48757897 48757932 -128216208 + AT_rich Low_complexity Low_complexity 1 35 0 4021 262 56 17 chrX 48758594 48759136 -128215004 - L1PBb LINE L1 -3611 3237 2718 1779 139 72 28 chrX 48759136 48759495 -128214645 - THE1C LTR MaLR 0 375 1 4021 262 56 17 chrX 48759495 48760694 -128213446 - L1PBb LINE L1 -4130 2718 1335 368 250 0 0 chrX 48760687 48760767 -128213373 - L1PBb LINE L1 -5293 1555 1476 * 339 348 73 88 chrX 48760767 48761276 -128212864 - L1PBb LINE L1 -5710 1139 639 630 328 103 40 chrX 48761842 48762290 -128211850 - L1PBb LINE L1 -6373 476 1 356 188 62 0 chrX 48762292 48762388 -128211752 - L1MDa LINE L1 -4600 1940 1839 2706 179 21 44 chrX 48762389 48762999 -128211141 + L1MA6 LINE L1 5334 5929 -371 1440 121 53 0 chrX 48763000 48763206 -128210934 - AluSg/x SINE Alu -18 294 78 1360 195 29 55 chrX 48763206 48763346 -128210794 + L1MA6 LINE L1 5921 6063 -237 2233 77 0 18 chrX 48763346 48763659 -128210481 + AluY SINE Alu 1 308 0 1360 195 29 55 chrX 48763659 48763902 -128210238 + L1MA6 LINE L1 6063 6295 -5 281 145 16 0 chrX 48764011 48764073 -128210067 + (TA)n Simple_repeat Simple_repeat 1 63 0 3357 200 23 8 chrX 48764088 48764797 -128209343 - L1PB4 LINE L1 -10 6146 5428 3910 199 30 8 chrX 48764811 48765811 -128208329 - L1PB4 LINE L1 -14 6199 5189 1884 136 0 0 chrX 48765814 48766101 -128208039 - L1PA14 LINE L1 -10 6151 5865 6037 230 25 21 chrX 48766101 48767846 -128206294 - L1PB4 LINE L1 -1024 5179 3428 2435 142 30 47 chrX 48767848 48768321 -128205819 - MER4C LTR ERV1 0 465 1 3005 96 10 0 chrX 48768324 48768739 -128205401 + THE1A-int LTR MaLR 1162 1580 0 2075 132 47 9 chrX 48768739 48769081 -128205059 + THE1A LTR MaLR 1 355 0 1891 328 57 56 chrX 48769349 48771760 -128202380 - PRIMA41-int LTR ERV1 -2765 4991 2579 765 286 48 27 chrX 48772052 48772418 -128201722 - PRIMA41-int LTR ERV1 -4029 2647 1560 345 24 0 0 chrX 48774300 48774342 -128199798 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1676 266 33 23 chrX 48775196 48775677 -128198463 - MER41E LTR ERV1 -6 506 21 3324 251 41 44 chrX 48775784 48777799 -128196341 - L1PB4 LINE L1 -2828 3375 1354 * 6787 33 1 0 chrX 48777796 48778613 -128195527 + L1P LINE L1 3980 4797 -1349 637 281 39 34 chrX 48778606 48779175 -128194965 - L1PB4 LINE L1 -4849 1354 694 * 319 247 0 0 chrX 48779171 48779252 -128194888 - L1PA15-16 LINE L1 -5292 1557 1477 * 7734 250 44 42 chrX 48780487 48781033 -128193107 - L1P5 LINE L1 -720 6152 5609 570 100 0 0 chrX 48781033 48781113 -128193027 + L1PA7 LINE L1 6068 6147 -7 2439 150 16 0 chrX 48781122 48781549 -128192591 + L1PA16 LINE L1 5726 6159 -7 7734 250 44 42 chrX 48781549 48785787 -128188353 - L1P5 LINE L1 -1270 5602 1272 272 363 0 6 chrX 48785833 48785990 -128188150 - L1P5 LINE L1 -5707 1156 1001 1027 319 173 39 chrX 48786514 48787351 -128186789 - L1M2 LINE L1 -5893 956 8 907 236 50 13 chrX 48787750 48788177 -128185963 - LTR29 LTR ERV1 0 644 160 250 250 10 42 chrX 48788209 48788305 -128185835 - MER34 LTR ERV1 -449 93 1 3916 185 32 32 chrX 48788328 48788353 -128185787 - MER34-int LTR ERV1 -20 6311 6287 2225 108 0 19 chrX 48788353 48788669 -128185471 + AluSg SINE Alu 1 310 0 3916 185 32 32 chrX 48788669 48789588 -128184552 - MER34-int LTR ERV1 -43 6288 5367 14232 45 2 0 chrX 48789589 48792136 -128182004 + L1PA4 LINE L1 3603 6152 -3 6341 44 0 0 chrX 48792150 48792919 -128181221 + L1PA5 LINE L1 5386 6154 0 2278 193 15 6 chrX 48792954 48793432 -128180708 - MER34-int LTR ERV1 -962 5369 4888 897 162 12 1 chrX 48793440 48793602 -128180538 - L1PA15 LINE L1 -23 6142 5975 1939 204 52 4 chrX 48793602 48794101 -128180039 - MER34-int LTR ERV1 -1460 4871 4349 350 132 0 0 chrX 48794102 48794155 -128179985 - THE1A LTR MaLR 0 355 303 11257 119 9 30 chrX 48794155 48796155 -128177985 + L1PA7 LINE L1 15 1993 -4468 16260 88 16 8 chrX 48796155 48799327 -128174813 + L1PA7 LINE L1 3310 6454 -15 288 0 0 0 chrX 48799332 48799364 -128174776 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 872 50 0 17 chrX 48799810 48799929 -128174211 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 2324 84 6 0 chrX 48799929 48800250 -128173890 - THE1A LTR MaLR -31 324 2 10949 115 9 9 chrX 48800251 48801830 -128172310 - THE1A-int LTR MaLR 0 1580 2 2655 101 0 0 chrX 48801831 48802186 -128171954 - THE1A LTR MaLR 0 355 1 1670 186 56 69 chrX 48802186 48802827 -128171313 - MER34-int LTR ERV1 -1979 4352 3720 1002 243 42 11 chrX 48803052 48803455 -128170685 + LTR2 LTR ERV1 3 449 0 37 76 0 0 chrX 48803465 48803544 -128170596 + AT_rich Low_complexity Low_complexity 1 79 0 3263 183 32 68 chrX 48803552 48804469 -128169671 - MER34-int LTR ERV1 -2794 3537 2654 3664 212 40 66 chrX 48804492 48804716 -128169424 - LTR49-int LTR ERV1 -3707 2624 2396 481 259 15 37 chrX 48804716 48804851 -128169289 + FLAM_A SINE Alu 1 132 -1 3664 212 40 66 chrX 48804851 48805532 -128168608 - LTR49-int LTR ERV1 -3935 2396 1699 2001 143 11 0 chrX 48805532 48805819 -128168321 - AluSx SINE Alu -21 291 2 3664 212 40 66 chrX 48805819 48805961 -128168179 - LTR49-int LTR ERV1 -4632 1699 1555 576 0 0 0 chrX 48805961 48806025 -128168115 + (CA)n Simple_repeat Simple_repeat 1 64 0 3664 212 40 66 chrX 48806025 48806191 -128167949 - LTR49-int LTR ERV1 -4776 1555 777 3613 184 18 27 chrX 48806191 48806920 -128167220 + MER50 LTR ERV1 1 722 -12 7326 176 50 38 chrX 48806920 48808417 -128165723 + MER50-int LTR ERV1 7 1521 -5684 409 228 37 81 chrX 48808465 48808601 -128165539 + MER50-int LTR ERV1 1505 1634 -5571 959 200 88 8 chrX 48808727 48808967 -128165173 + MER50-int LTR ERV1 1630 1888 -5317 1783 152 110 0 chrX 48808976 48809304 -128164836 + THE1B LTR MaLR 1 364 0 9269 140 56 3 chrX 48809304 48810804 -128163336 + THE1B-int LTR MaLR 1 1580 0 854 86 0 0 chrX 48810808 48810924 -128163216 + THE1B LTR MaLR 249 364 0 5870 236 40 34 chrX 48810929 48812508 -128161632 + MER50-int LTR ERV1 1904 3370 -3835 21 0 0 0 chrX 48812549 48812570 -128161570 + AT_rich Low_complexity Low_complexity 1 21 0 618 323 36 29 chrX 48812764 48813210 -128160930 + MER50-int LTR ERV1 2885 3333 -1621 554 318 48 37 chrX 48813897 48814447 -128159693 + MER50-int LTR ERV1 3761 5282 -1809 210 71 0 0 chrX 48814558 48814586 -128159554 + (A)n Simple_repeat Simple_repeat 1 28 0 562 338 30 24 chrX 48814838 48815335 -128158805 + MER50-int LTR ERV1 5387 5886 -1870 5654 184 2 22 chrX 48816541 48817647 -128156493 + MER50-int LTR ERV1 3895 7131 -74 822 187 11 33 chrX 48817670 48817852 -128156288 - LTR9 LTR ERV1 -434 178 1 26 0 0 0 chrX 48818176 48818202 -128155938 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chrX 48818257 48818281 -128155859 + AT_rich Low_complexity Low_complexity 1 24 0 287 222 0 37 chrX 48818378 48818459 -128155681 + L1MC4a LINE L1 6229 6306 -1502 18834 64 2 4 chrX 48818474 48821016 -128153124 + L1P LINE L1 9 2545 -3601 33642 50 2 3 chrX 48821062 48826351 -128147789 - L1PA4 LINE L1 0 6155 876 3784 197 37 22 chrX 48826374 48827804 -128146336 + L1MA4 LINE L1 4235 5683 -617 729 238 21 0 chrX 48827808 48827951 -128146189 + AluJb SINE Alu 140 285 -27 2250 213 60 7 chrX 48827956 48828056 -128146084 + L1MA4 LINE L1 5677 5770 -530 345 100 0 0 chrX 48828056 48828106 -128146034 + (TA)n Simple_repeat Simple_repeat 2 51 0 2250 213 60 7 chrX 48828106 48828586 -128145554 + L1MA4 LINE L1 5770 6288 -12 630 294 59 7 chrX 48828601 48828723 -128145417 + L1 LINE L1 4763 4877 -1269 2756 181 25 61 chrX 48828723 48829358 -128144782 - LTR9 LTR ERV1 0 612 1 630 294 59 7 chrX 48829358 48829541 -128144599 + L1 LINE L1 4877 5084 -1062 1945 106 14 7 chrX 48829544 48829819 -128144321 - AluSq SINE Alu -22 291 15 271 91 0 0 chrX 48829820 48829864 -128144276 + AluSp/q SINE Alu 259 302 -1 1767 159 24 0 chrX 48829871 48829995 -128144145 + AluSx SINE Alu 2 122 -190 261 0 0 0 chrX 48829995 48830024 -128144116 + (CA)n Simple_repeat Simple_repeat 2 30 0 1767 159 24 0 chrX 48830024 48830195 -128143945 + AluSx SINE Alu 122 304 -8 6549 263 37 3 chrX 48830235 48831724 -128142416 + L1PA13 LINE L1 1 1539 -5248 37968 87 8 8 chrX 48831735 48837874 -128136266 + L1PA5 LINE L1 11 6150 -4 17701 193 24 12 chrX 48837880 48843090 -128131050 + L1PA13 LINE L1 1524 6806 -8 229 418 0 20 chrX 48843709 48843855 -128130285 + L1PB4 LINE L1 787 929 -5921 301 278 22 0 chrX 48844265 48844355 -128129785 + L1PB4 LINE L1 1481 1572 -5277 * 9733 239 52 19 chrX 48844333 48847134 -128127006 + L1PB4 LINE L1 1423 4131 -2728 279 0 0 0 chrX 48847134 48847165 -128126975 + (CA)n Simple_repeat Simple_repeat 2 32 0 9733 239 52 19 chrX 48847165 48847573 -128126567 + L1PB4 LINE L1 4131 4524 -2335 1655 190 7 3 chrX 48847573 48847868 -128126272 - AluSx SINE Alu -16 296 1 9733 239 52 19 chrX 48847868 48849837 -128124303 + L1PB4 LINE L1 4524 6847 -12 249 88 94 35 chrX 48849837 48850007 -128124133 + (TA)n Simple_repeat Simple_repeat 1 180 0 30 0 0 0 chrX 48850094 48850124 -128124016 + AT_rich Low_complexity Low_complexity 1 30 0 258 32 0 0 chrX 48850124 48850155 -128123985 + (CA)n Simple_repeat Simple_repeat 2 32 0 11287 231 36 28 chrX 48850155 48853418 -128120722 + L1M2 LINE L1 65 3302 -3546 1518 200 0 56 chrX 48853418 48853723 -128120417 + AluJo SINE Alu 3 290 -22 11287 231 36 28 chrX 48853723 48854214 -128119926 + L1M2 LINE L1 3302 3788 -3060 2087 144 3 0 chrX 48854214 48854519 -128119621 + AluSx SINE Alu 1 306 -6 11287 231 36 28 chrX 48854519 48856107 -128118033 + L1M2 LINE L1 3788 5451 -1397 2911 274 40 12 chrX 48856115 48856934 -128117206 + L1M1 LINE L1 16 857 -6708 1338 242 31 14 chrX 48856958 48857442 -128116698 - L1 LINE L1 -2586 3384 2893 614 339 73 15 chrX 48857644 48857974 -128116166 - L1 LINE L1 -5541 350 2 26 50 0 0 chrX 48858032 48858072 -128116068 + AT_rich Low_complexity Low_complexity 1 40 0 183 286 29 14 chrX 48858999 48859069 -128115071 + MIR SINE MIR 134 204 -58 367 98 0 0 chrX 48859196 48859247 -128114893 + LTR55 LTR ERV 10 60 -488 3562 95 10 18 chrX 48859281 48859953 -128114187 - L1PA8A LINE L1 -3 6128 5276 424 218 23 0 chrX 48859953 48860040 -128114100 + LTR55 LTR ERV 47 135 -413 * 782 262 50 25 chrX 48860035 48860314 -128113826 + LTR55 LTR ERV 248 533 -15 2874 10 0 0 chrX 48861112 48861423 -128112717 + AluY SINE Alu 1 311 0 3329 128 16 82 chrX 48861821 48862464 -128111676 - MER4A LTR ERV1 0 600 1 2896 136 25 41 chrX 48862471 48863028 -128111112 - MER4A-int LTR ERV1 -7 6591 6044 609 163 0 0 chrX 48863028 48863126 -128111014 + MER4A LTR ERV1 1 98 -566 1690 127 182 20 chrX 48863126 48863472 -128110668 + MER4A LTR ERV1 263 664 0 3970 146 117 68 chrX 48863475 48864467 -128109673 + MER4A-int LTR ERV1 1 1040 -5558 3765 147 9 9 chrX 48864467 48865102 -128109038 + MER41B LTR ERV1 1 635 0 4226 157 12 9 chrX 48865102 48865790 -128108350 + MER41-int LTR ERV1 1 690 -5256 1832 149 51 64 chrX 48865791 48866166 -128107974 + MER41-int LTR ERV1 1392 1761 -4185 702 151 0 17 chrX 48866168 48866287 -128107853 + MER41-int LTR ERV1 1901 2017 -3929 * 5795 150 39 39 chrX 48866283 48867422 -128106718 + MER41-int LTR ERV1 2781 3919 -3618 11487 114 12 19 chrX 48867437 48869212 -128104928 + MER41-int LTR ERV1 4164 5926 -20 1679 86 39 0 chrX 48869208 48869440 -128104700 + MER41B-int LTR ERV1 5686 5926 -20 * 1855 83 36 0 chrX 48869436 48869688 -128104452 + MER41B-int LTR ERV1 5686 5946 0 3899 137 13 5 chrX 48869688 48870318 -128103822 + MER41B LTR ERV1 1 635 0 3846 163 62 20 chrX 48870318 48871176 -128102964 + MER41-int LTR ERV1 1037 1930 -4668 8447 241 41 18 chrX 48871176 48871661 -128102479 + L1M3e LINE L1 167 640 -6466 828 30 0 0 chrX 48871661 48871760 -128102380 + (GA)n Simple_repeat Simple_repeat 2 100 0 8447 241 41 18 chrX 48871760 48874109 -128100031 + L1M3e LINE L1 640 3729 -3377 470 361 4 18 chrX 48874114 48874341 -128099799 + L1PA16 LINE L1 788 1011 -6563 687 298 74 7 chrX 48874502 48874811 -128099329 + L1PA16 LINE L1 2183 2512 -5069 * 8551 34 0 1 chrX 48874809 48876640 -128097500 + L1PA4 LINE L1 4324 6152 -3 10019 239 70 29 chrX 48876651 48878685 -128095455 + L1PA16 LINE L1 2554 4502 -3102 13310 34 8 6 chrX 48878685 48880975 -128093165 + L1PA4 LINE L1 3868 6155 0 10019 239 70 29 chrX 48880975 48882895 -128091245 + L1PA16 LINE L1 4502 6805 -799 4093 29 0 0 chrX 48882895 48883342 -128090798 + L1PA5 LINE L1 5704 6150 -4 10019 239 70 29 chrX 48883342 48884176 -128089964 + L1PA16 LINE L1 6805 7603 -1 1340 275 28 71 chrX 48884175 48884481 -128089659 - L1 LINE L1 -3156 2990 2723 * 6592 90 22 4 chrX 48884481 48886338 -128087802 + L1PA11 LINE L1 4302 6172 -2 1340 275 28 71 chrX 48886338 48886649 -128087491 - L1 LINE L1 -3423 2723 2400 * 4261 220 16 1 chrX 48886641 48887828 -128086312 + L1MB1 LINE L1 4964 6168 0 3210 263 78 55 chrX 48887836 48888066 -128086074 + L1MC4 LINE L1 6367 6590 -1452 605 39 58 0 chrX 48888066 48888169 -128085971 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 3210 263 78 55 chrX 48888169 48889278 -128084862 + L1MC4 LINE L1 6590 7741 -301 902 249 53 0 chrX 48889278 48889487 -128084653 - MER58A DNA MER1_type -3 221 2 3210 263 78 55 chrX 48889487 48889537 -128084603 + L1MC4 LINE L1 7741 7788 -254 2007 231 79 25 chrX 48889667 48890187 -128083953 - MER74A LTR ERVL 0 558 11 1200 111 0 0 chrX 48890197 48890377 -128083763 + (TA)n Simple_repeat Simple_repeat 1 180 0 243 188 0 0 chrX 48890382 48890446 -128083694 - L1MC4 LINE L1 -1339 6703 6640 534 255 72 19 chrX 48890470 48890678 -128083462 - HERVL74 LTR ERVL -42 5643 5425 7236 261 29 43 chrX 48890690 48892680 -128081460 + L1M2 LINE L1 324 2340 -4828 2389 56 3 0 chrX 48892680 48892966 -128081174 + AluSp SINE Alu 1 287 -26 294 95 0 0 chrX 48892966 48893008 -128081132 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 7236 261 29 43 chrX 48893008 48893396 -128080744 + L1M2 LINE L1 2338 2670 -4498 330 96 0 0 chrX 48893418 48893470 -128080670 + L1M2 LINE L1 1958 2009 -5159 * 2900 214 24 41 chrX 48893456 48894532 -128079608 + L1M2 LINE L1 2657 3705 -3462 2176 113 13 3 chrX 48894532 48894841 -128079299 - AluSq SINE Alu -1 312 1 2900 214 24 41 chrX 48894841 48895082 -128079058 + L1M2 LINE L1 3705 3949 -3218 1217 298 68 72 chrX 48895115 48895836 -128078304 + L1 LINE L1 21 738 -6471 609 299 52 64 chrX 48896359 48897011 -128077129 + L1 LINE L1 1086 1947 -5262 228 35 0 0 chrX 48897011 48897040 -128077100 + (CAA)n Simple_repeat Simple_repeat 2 30 0 609 299 52 64 chrX 48897040 48897122 -128077018 + L1 LINE L1 1947 2028 -5181 309 283 11 11 chrX 48898377 48898469 -128075671 + L1PA15-16 LINE L1 1473 1564 -5285 * 5265 228 24 20 chrX 48898466 48900993 -128073147 + L1PA16 LINE L1 1348 3865 -3004 189 0 0 0 chrX 48900993 48901014 -128073126 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 5265 228 24 20 chrX 48901014 48902470 -128071670 + L1PA16 LINE L1 3865 6861 -8 * 5591 229 33 28 chrX 48902465 48902826 -128071314 + L1 LINE L1 4090 4448 -2760 5854 99 11 31 chrX 48902826 48903634 -128070506 - LTR25 LTR ERV1 -2 792 1 5591 229 33 28 chrX 48903634 48904799 -128069341 + L1 LINE L1 4448 5624 -1584 4251 265 26 44 chrX 48904812 48906604 -128067536 + L1PBa LINE L1 3 1644 -5219 2235 181 3 13 chrX 48906612 48907004 -128067136 + L1PBb LINE L1 255 642 -5562 3117 108 2 22 chrX 48907004 48907457 -128066683 + L1PB1 LINE L1 5708 6151 0 4520 163 92 65 chrX 48907457 48909100 -128065040 - MER4-int LTR ERV1 -4114 2484 1266 4445 137 5 5 chrX 48909100 48909735 -128064405 + MER41B LTR ERV1 1 635 0 4124 145 9 8 chrX 48909735 48910364 -128063776 + MER41B-int LTR ERV1 1 630 -5316 4026 142 64 30 chrX 48910340 48911202 -128062938 + MER41B-int LTR ERV1 1224 2017 -3929 * 4985 135 60 27 chrX 48911194 48912447 -128061693 + MER41B-int LTR ERV1 2777 3749 -2197 2055 49 0 0 chrX 48912452 48912698 -128061442 + L1PA5 LINE L1 3972 4217 -1929 8200 36 0 1 chrX 48912699 48914402 -128059738 + L1PA5 LINE L1 4453 6153 -1 490 147 49 0 chrX 48914402 48914504 -128059636 + Charlie5 DNA MER1_type 2416 2522 -90 5679 115 105 120 chrX 48914598 48916183 -128057957 + pTR5 LTR ERV1 743 2438 0 883 118 0 15 chrX 48916856 48916992 -128057148 + MER4A LTR ERV1 1 134 -530 772 227 9 19 chrX 48916994 48917210 -128056930 - L1M4 LINE L1 -774 5372 5159 267 188 101 29 chrX 48917205 48917274 -128056866 - L1MC5 LINE L1 -585 7376 7303 * 21 36 0 0 chrX 48917344 48917372 -128056768 + GC_rich Low_complexity Low_complexity 1 28 0 2741 78 38 90 chrX 48917423 48917923 -128056217 + SVA Other Other 393 866 -520 6461 66 4 54 chrX 48917951 48919392 -128054748 + SVA Other Other 433 1383 -3 2141 149 13 84 chrX 48919392 48919926 -128054214 + MER4A LTR ERV1 100 664 0 2363 181 103 42 chrX 48919940 48920926 -128053214 + MER4A-int LTR ERV1 13 1180 -4483 240 35 0 0 chrX 48920926 48920955 -128053185 + (TG)n Simple_repeat Simple_repeat 2 30 0 2363 181 103 42 chrX 48920955 48921130 -128053010 + MER4A-int LTR ERV1 1180 1343 -4320 3653 136 12 94 chrX 48921133 48921823 -128052317 - MER41B LTR ERV1 0 635 3 2902 169 4 0 chrX 48921825 48922304 -128051836 - MER41B-int LTR ERV1 0 5946 5466 393 135 95 0 chrX 48922319 48922393 -128051747 + L1MA8 LINE L1 6055 6135 -156 8200 36 0 1 chrX 48922393 48924091 -128050049 - L1PA5 LINE L1 -5 6149 4453 2055 49 0 0 chrX 48924092 48924338 -128049802 - L1PA5 LINE L1 -1929 4217 3972 1958 123 113 7 chrX 48924343 48924750 -128049390 - MER41B-int LTR ERV1 -2197 3749 3300 * 4583 136 35 31 chrX 48924738 48925596 -128048544 - MER41B-int LTR ERV1 -3900 3637 2777 3721 139 34 4 chrX 48925588 48926441 -128047699 - MER41B-int LTR ERV1 -3929 2017 1077 * 3859 143 9 8 chrX 48926426 48927055 -128047085 - MER41B-int LTR ERV1 -5316 630 1 4129 123 11 11 chrX 48927055 48927690 -128046450 - MER41B LTR ERV1 0 635 1 3985 163 43 66 chrX 48927690 48929334 -128044806 + MER4-int LTR ERV1 1344 2482 -4116 2890 110 2 22 chrX 48929334 48929787 -128044353 - L1PB1 LINE L1 0 6151 5708 2087 181 3 13 chrX 48929787 48930179 -128043961 - L1PBb LINE L1 -5562 1301 914 3690 270 23 40 chrX 48930187 48931979 -128042161 - L1PBa LINE L1 -5219 1644 3 4947 229 33 28 chrX 48931992 48933157 -128040983 - L1 LINE L1 -1584 4562 3386 5473 93 11 31 chrX 48933157 48933965 -128040175 + LTR25 LTR ERV1 1 792 -2 4947 229 33 28 chrX 48933965 48934326 -128039814 - L1 LINE L1 -2760 3386 3028 4807 207 13 9 chrX 48934321 48935777 -128038363 - L1PA16 LINE L1 -8 6860 5397 * 189 0 0 0 chrX 48935777 48935798 -128038342 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 4807 207 13 9 chrX 48935798 48936118 -128038022 - L1PA16 LINE L1 -1471 5397 5080 4235 252 31 26 chrX 48936112 48938323 -128035817 - L1PA16 LINE L1 -3183 3665 1347 * 277 315 0 0 chrX 48938320 48938412 -128035728 - L1PA16 LINE L1 -5285 1563 1472 * 487 302 51 62 chrX 48939669 48939743 -128034397 - L1PA16 LINE L1 -5189 1660 1587 228 35 0 0 chrX 48939743 48939772 -128034368 + (TTG)n Simple_repeat Simple_repeat 2 30 0 487 302 51 62 chrX 48939772 48940424 -128033716 - L1PA16 LINE L1 -5262 1587 726 1005 298 68 72 chrX 48940947 48941668 -128032472 - L1M2b LINE L1 -6471 738 21 2561 213 24 41 chrX 48941712 48941942 -128032198 - L1 LINE L1 -3229 3938 3705 2177 113 13 3 chrX 48941942 48942251 -128031889 + AluSq SINE Alu 1 312 -1 2561 213 24 41 chrX 48942251 48943327 -128030813 - L1 LINE L1 -3462 3705 2657 306 96 0 0 chrX 48943313 48943365 -128030775 - L1 LINE L1 -5159 2009 1958 * 6484 261 29 43 chrX 48943387 48943775 -128030365 - L1M2 LINE L1 -4498 2351 1959 294 95 0 0 chrX 48943775 48943817 -128030323 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2287 54 3 27 chrX 48943817 48944111 -128030029 - AluSp SINE Alu -26 287 1 6484 261 29 43 chrX 48944111 48946104 -128028036 - L1M2 LINE L1 -4888 1961 2 1430 270 26 36 chrX 48946258 48946680 -128027460 - L1M1 LINE L1 -5833 1732 644 3736 164 60 19 chrX 48946693 48947576 -128026564 - MER41B-int LTR ERV1 -4643 1955 1037 3884 130 19 11 chrX 48947576 48948206 -128025934 - MER41B LTR ERV1 0 635 1 1764 83 36 0 chrX 48948206 48948458 -128025682 - MER41B-int LTR ERV1 0 5946 5686 1597 86 39 0 chrX 48948454 48948686 -128025454 - MER41B-int LTR ERV1 -20 5926 5686 * 10896 114 12 20 chrX 48948682 48950458 -128023682 - MER41B-int LTR ERV1 -20 5926 4164 5418 150 44 39 chrX 48950458 48951612 -128022528 - MER41B-int LTR ERV1 -2823 3919 2644 663 151 0 17 chrX 48951608 48951727 -128022413 - MER41B-int LTR ERV1 -3929 2017 1901 * 1707 152 51 64 chrX 48951729 48952104 -128022036 - MER41B-int LTR ERV1 -4185 1761 1392 3970 157 12 9 chrX 48952105 48952793 -128021347 - MER41B-int LTR ERV1 -5256 690 1 3759 132 20 20 chrX 48952793 48953428 -128020712 - MER41B LTR ERV1 0 635 1 3663 146 117 68 chrX 48953428 48954420 -128019720 - MER4A-int LTR ERV1 -5558 1040 1 1567 127 182 20 chrX 48954423 48954769 -128019371 - MER4A LTR ERV1 0 664 263 576 163 0 0 chrX 48954769 48954867 -128019273 - MER4A LTR ERV1 -566 98 1 2745 135 25 41 chrX 48954867 48955424 -128018716 + MER4A-int LTR ERV1 6044 6591 -7 3316 128 16 82 chrX 48955431 48956074 -128018066 + MER4A LTR ERV1 1 600 0 2849 13 0 0 chrX 48956455 48956766 -128017374 - AluY SINE Alu 0 311 1 710 254 52 29 chrX 48957564 48957836 -128016304 - LTR55 LTR ERV -15 533 256 396 218 23 0 chrX 48957839 48957926 -128016214 - LTR55 LTR ERV -413 135 47 3823 87 9 13 chrX 48957926 48958598 -128015542 + L1PA8A LINE L1 5276 6128 -3 349 98 0 0 chrX 48958632 48958683 -128015457 - LTR55 LTR ERV -488 60 10 26 50 0 0 chrX 48959807 48959847 -128014293 + AT_rich Low_complexity Low_complexity 1 40 0 302 303 20 13 chrX 48959905 48960057 -128014083 + L1MB2 LINE L1 2 154 -5737 21 36 0 0 chrX 48960058 48960086 -128014054 + AT_rich Low_complexity Low_complexity 1 28 0 763 36 85 0 chrX 48960099 48960264 -128013876 + (TA)n Simple_repeat Simple_repeat 1 179 0 332 373 28 10 chrX 48960268 48960451 -128013689 + L1MB2 LINE L1 204 632 -5259 5271 231 62 16 chrX 48960648 48963546 -128010594 + L1MB2 LINE L1 2889 5920 -75 569 199 23 0 chrX 48964671 48964802 -128009338 + L1MB7 LINE L1 6042 6175 -9 4152 129 69 15 chrX 48965399 48965731 -128008409 - MER4E LTR ERV1 0 779 466 10847 76 15 0 chrX 48965731 48967969 -128006171 + L1PA7 LINE L1 3902 6153 -1 4152 129 69 15 chrX 48967969 48968384 -128005756 - MER4E LTR ERV1 -313 466 1 5313 123 63 24 chrX 48969215 48970197 -128003943 - MER4E-int LTR ERV1 -113 6645 5626 2539 132 111 8 chrX 48970204 48970967 -128003173 - MER4E-int LTR ERV1 -1375 5383 4452 1064 204 70 4 chrX 48970966 48971196 -128002944 - MER4E-int LTR ERV1 -2670 4088 3844 * 36048 51 1 0 chrX 48971196 48977049 -127997091 - L1PA4 LINE L1 0 6155 297 586 61 0 12 chrX 48977049 48977131 -127997009 - L1PA4 LINE L1 -6063 83 3 7177 132 78 27 chrX 48977131 48978670 -127995470 - MER4E-int LTR ERV1 -2905 3853 1782 7027 54 11 0 chrX 48978670 48980192 -127993948 + L1PA5 LINE L1 4582 6150 -4 7177 132 78 27 chrX 48980192 48981081 -127993059 - MER4E-int LTR ERV1 -4976 1782 940 1651 133 50 81 chrX 48981093 48981245 -127992895 - MER4B-int LTR ERV1 -5569 1189 1034 2386 103 0 0 chrX 48981245 48981557 -127992583 + AluSp SINE Alu 1 312 -1 1651 133 50 81 chrX 48981557 48982001 -127992139 - MER4B-int LTR ERV1 -5724 1034 555 1473 61 0 0 chrX 48982017 48982213 -127991927 - MER4E LTR ERV1 -27 739 544 751 254 71 17 chrX 48982230 48982688 -127991452 + L1M4 LINE L1 2468 2961 -3185 1388 179 54 88 chrX 48982688 48983152 -127990988 + MER83 LTR ERV1 1 448 0 4747 273 55 52 chrX 48983152 48987300 -127986840 + MER83-int LTR ERV1 12 4629 -1083 2127 143 7 0 chrX 48987494 48987802 -127986338 + AluSx SINE Alu 1 310 -2 642 300 48 51 chrX 48987881 48989164 -127984976 + MER83-int LTR ERV1 4363 6556 -1885 2293 96 0 10 chrX 48989578 48989880 -127984260 - AluSx SINE Alu -6 306 8 1772 191 13 8 chrX 48990119 48990501 -127983639 + MER83-int LTR ERV1 1932 2315 -1970 402 311 0 0 chrX 48991748 48991911 -127982229 + MER83-int LTR ERV1 6542 8177 -449 1922 166 0 0 chrX 48992098 48992417 -127981723 + MER83-int LTR ERV1 3956 4274 -11 1238 193 39 87 chrX 48992418 48992880 -127981260 + MER83 LTR ERV1 1 440 -8 788 314 32 49 chrX 48992949 48993544 -127980596 + L1PA16 LINE L1 9 593 -6988 878 325 37 39 chrX 48993565 48994355 -127979785 + L1PA16 LINE L1 1545 2181 -5400 2407 136 15 2 chrX 48994645 48995050 -127979090 - MER41B LTR ERV1 0 635 226 2405 279 40 12 chrX 48995053 48996109 -127978031 + L1PA16 LINE L1 3416 4500 -3084 16558 45 3 0 chrX 48996125 48998934 -127975206 - L1PA4 LINE L1 -4 6151 3337 23991 67 4 0 chrX 48998936 49002194 -127971946 - L1PA4 LINE L1 -2871 3275 7 6154 226 34 31 chrX 49002219 49004186 -127969954 + L1PA16 LINE L1 4542 6501 -1103 5386 106 81 0 chrX 49004186 49005570 -127968570 + L1PA11 LINE L1 4697 6172 -2 6154 226 34 31 chrX 49005570 49005617 -127968523 + L1PA16 LINE L1 6501 6546 -1058 365 110 14 27 chrX 49005617 49005690 -127968450 + L1PA16 LINE L1 6092 6163 -3 6154 226 34 31 chrX 49005690 49006730 -127967410 + L1PA16 LINE L1 6546 7595 -9 911 284 38 72 chrX 49006771 49007776 -127966364 + L1M4 LINE L1 3074 4044 -2102 390 21 0 0 chrX 49008024 49008071 -127966069 + (TG)n Simple_repeat Simple_repeat 2 48 0 860 191 94 58 chrX 49010008 49010310 -127963830 - MSTC LTR MaLR 0 428 74 4013 258 64 34 chrX 49010378 49011714 -127962426 - MSTC-int LTR MaLR 0 1735 360 3711 180 36 4 chrX 49011695 49012658 -127961482 + L1PA5 LINE L1 4480 5472 -696 * 10648 175 31 27 chrX 49012706 49014108 -127960032 - L1PB1 LINE L1 -1 6150 4756 2459 56 0 7 chrX 49014108 49014411 -127959729 - AluY SINE Alu -10 301 1 10648 175 31 27 chrX 49014411 49014781 -127959359 - L1PB1 LINE L1 -1395 4756 4389 240 35 0 0 chrX 49014781 49014810 -127959330 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 10648 175 31 27 chrX 49014810 49016615 -127957525 - L1PB1 LINE L1 -1762 4389 2555 3112 71 2 15 chrX 49016618 49017134 -127957006 + L1PA5 LINE L1 5442 6141 -13 212 171 0 0 chrX 49017144 49017185 -127956955 + A-rich Low_complexity Low_complexity 5 45 0 2174 182 34 2 chrX 49017186 49017680 -127956460 + L1PA13 LINE L1 5571 6158 -5 6451 200 43 13 chrX 49017686 49019608 -127954532 + L1M2 LINE L1 3750 5738 -562 351 91 0 0 chrX 49019883 49019938 -127954202 - MLT2A1 LTR ERVL 0 444 390 189 94 0 0 chrX 49019958 49019990 -127954150 + (TA)n Simple_repeat Simple_repeat 1 32 0 2727 88 18 8 chrX 49019993 49020393 -127953747 - MLT2A1 LTR ERVL -40 404 1 38054 77 18 3 chrX 49020393 49023648 -127950492 - HERVL-A1 LTR ERVL 0 5654 2283 3283 89 45 128 chrX 49023648 49024313 -127949827 - LTR66 LTR ERVL 0 610 1 38054 77 18 3 chrX 49024313 49026628 -127947512 - HERVL-A1 LTR ERVL -3371 2283 2 423 36 0 0 chrX 49026629 49026684 -127947456 - MLT2A2 LTR ERVL 0 453 399 198 0 0 0 chrX 49026702 49026724 -127947416 + (TA)n Simple_repeat Simple_repeat 2 23 0 2901 119 14 5 chrX 49026728 49027166 -127946974 - MLT2A1 LTR ERVL -2 442 1 2039 235 53 8 chrX 49027401 49027894 -127946246 + MLT2B3 LTR ERVL 1 515 -39 1333 217 27 3 chrX 49027970 49028306 -127945834 + HERVL-B3 LTR ERVL 1 344 -5310 747 167 0 7 chrX 49028306 49028450 -127945690 + L1PA12 LINE L1 4444 4586 -1560 2710 13 0 0 chrX 49028450 49028760 -127945380 - L1PA2 LINE L1 -4 6151 5842 13923 41 2 0 chrX 49028760 49030560 -127943580 + L1P LINE L1 1058 2860 -3286 5432 96 61 4 chrX 49030560 49032126 -127942014 + L1PA12 LINE L1 4581 6158 -10 27668 187 26 4 chrX 49032138 49037398 -127936742 + HERVL-B3 LTR ERVL 387 5763 -1 2883 189 70 17 chrX 49037398 49037890 -127936250 + Ricksha DNA DNA 338 863 -1183 219 289 0 0 chrX 49037890 49037942 -127936198 + (TA)n Simple_repeat Simple_repeat 2 53 0 453 176 0 0 chrX 49037951 49038036 -127936104 + ERVL LTR ERVL 5152 5236 -528 254 159 0 0 chrX 49038056 49038100 -127936040 + MLT2B1 LTR ERVL 477 520 0 542 192 45 23 chrX 49038159 49038336 -127935804 + L1M4 LINE L1 4204 4384 -1762 1822 285 63 33 chrX 49038336 49039216 -127934924 + L1MC3 LINE L1 5575 6488 -1297 2214 133 16 16 chrX 49039216 49039591 -127934549 + THE1C LTR MaLR 1 375 0 1822 285 63 33 chrX 49039591 49039682 -127934458 + L1MC3 LINE L1 6488 6575 -1210 1123 208 102 1 chrX 49039822 49040227 -127933913 + MLT1D LTR MaLR 27 505 0 816 236 19 27 chrX 49040231 49040260 -127933880 + L1MD3 LINE L1 6632 6660 -1335 2138 122 7 3 chrX 49040260 49040564 -127933576 + AluSx SINE Alu 1 305 -7 816 236 19 27 chrX 49040564 49040792 -127933348 + L1MD3 LINE L1 6660 6887 -1108 11499 121 11 56 chrX 49040846 49043653 -127930487 + L1PA7 LINE L1 1 2805 -3656 891 90 28 0 chrX 49043651 49043796 -127930344 + L1P3 LINE L1 1555 1703 -4758 * 757 66 0 8 chrX 49043769 49043890 -127930250 + L1P3 LINE L1 3554 3673 -2788 * 18142 106 0 2 chrX 49043892 49046138 -127928002 + L1PA7 LINE L1 2824 5129 -1340 213 39 0 0 chrX 49046138 49046164 -127927976 + (CAGAA)n Simple_repeat Simple_repeat 4 29 0 18142 106 0 2 chrX 49046164 49047502 -127926638 + L1PA7 LINE L1 5129 6468 -1 1947 136 10 17 chrX 49047672 49047967 -127926173 - AluSq SINE Alu -20 293 1 1024 68 30 23 chrX 49048449 49048582 -127925558 + AluY SINE Alu 1 134 -177 2315 70 13 10 chrX 49048582 49048884 -127925256 + AluY SINE Alu 1 303 -8 1680 166 7 0 chrX 49049062 49049369 -127924771 + L1PA13 LINE L1 5848 6156 -7 519 234 43 78 chrX 49049375 49049527 -127924613 + L1MD3 LINE L1 6973 7114 -881 2245 81 7 7 chrX 49049527 49049824 -127924316 - AluY SINE Alu -14 297 1 519 234 43 78 chrX 49049824 49049927 -127924213 + L1MD3 LINE L1 7114 7219 -776 * 2912 249 49 35 chrX 49049919 49051139 -127923001 + L1M4 LINE L1 917 2261 -4121 1873 122 8 4 chrX 49051139 49051401 -127922739 + AluSx SINE Alu 1 263 -49 2912 249 49 35 chrX 49051401 49051934 -127922206 + L1M4 LINE L1 2261 2785 -3597 292 281 31 0 chrX 49052016 49052112 -127922028 + MLT1F1 LTR MaLR 26 124 -443 1182 241 45 18 chrX 49052137 49052518 -127921622 + L1MD3 LINE L1 7419 7809 -186 829 242 67 76 chrX 49052513 49053054 -127921086 + L1M4 LINE L1 4932 5467 -915 * 200 167 21 0 chrX 49053068 49053116 -127921024 + (TA)n Simple_repeat Simple_repeat 2 50 0 267 328 72 17 chrX 49053128 49053363 -127920777 + L1ME4a LINE L1 2 249 -6293 1903 234 53 11 chrX 49053648 49054718 -127919422 + L1ME4a LINE L1 2226 3344 -3300 30 0 0 0 chrX 49054771 49054801 -127919339 + AT_rich Low_complexity Low_complexity 1 30 0 1795 170 14 3 chrX 49055419 49055713 -127918427 + AluJb SINE Alu 1 297 -15 251 278 0 14 chrX 49056408 49056480 -127917660 + L2 LINE L2 3186 3256 -57 22 35 0 0 chrX 49057016 49057045 -127917095 + AT_rich Low_complexity Low_complexity 1 29 0 761 298 56 49 chrX 49057524 49058500 -127915640 + L1ME4a LINE L1 3942 4924 -1720 399 253 39 26 chrX 49058854 49059008 -127915132 + L1ME4a LINE L1 5420 5575 -1069 290 272 0 0 chrX 49059606 49059687 -127914453 + GA-rich Low_complexity Low_complexity 2 82 0 26 0 0 0 chrX 49061931 49061957 -127912183 + AT_rich Low_complexity Low_complexity 1 26 0 319 197 171 0 chrX 49062106 49062223 -127911917 - L1ME4a LINE L1 -187 5934 5798 322 292 125 12 chrX 49062262 49062430 -127911710 + L1ME4a LINE L1 6238 6424 -195 247 222 28 69 chrX 49062532 49062604 -127911536 + MIR SINE MIR 149 217 -45 222 255 0 0 chrX 49063465 49063516 -127910624 + L2 LINE L2 3263 3313 0 405 255 0 9 chrX 49063753 49063859 -127910281 + MIR SINE MIR 141 245 -17 558 219 19 33 chrX 49065280 49065495 -127908645 + L1MDb LINE L1 889 1100 -5309 * 5174 214 43 21 chrX 49065485 49065852 -127908288 + L1M1 LINE L1 2051 2408 -5157 2626 71 0 0 chrX 49065852 49066163 -127907977 + AluY SINE Alu 1 311 0 285 51 0 0 chrX 49066163 49066202 -127907938 + (TA)n Simple_repeat Simple_repeat 1 39 0 5174 214 43 21 chrX 49066202 49067484 -127906656 + L1M1 LINE L1 2407 3737 -3828 2182 241 28 5 chrX 49067487 49068129 -127906011 + L1M1 LINE L1 3772 4428 -3137 1829 202 55 21 chrX 49068130 49068606 -127905534 - LTR22B LTR ERVK 0 492 1 26457 95 11 4 chrX 49068606 49073088 -127901052 - HERVK22 LTR ERVK 0 6837 2327 4878 112 8 8 chrX 49073528 49074269 -127899871 - HERVK22 LTR ERVK -6096 741 1 1739 206 48 25 chrX 49074269 49074750 -127899390 - LTR22B LTR ERVK 0 492 1 7205 202 46 59 chrX 49074757 49075932 -127898208 + L1M1 LINE L1 4431 5620 -1945 341 93 19 0 chrX 49075932 49075986 -127898154 + (TA)n Simple_repeat Simple_repeat 1 55 0 207 0 0 0 chrX 49075987 49076010 -127898130 + (GA)n Simple_repeat Simple_repeat 2 24 0 7205 202 46 59 chrX 49076010 49076592 -127897548 + L1M1 LINE L1 5620 6208 -1357 2129 124 3 0 chrX 49076592 49076882 -127897258 + AluSg SINE Alu 2 292 -18 195 114 0 0 chrX 49076887 49076922 -127897218 + (TAAAA)n Simple_repeat Simple_repeat 3 37 0 7205 202 46 59 chrX 49076922 49077474 -127896666 + L1M1 LINE L1 6212 6720 -845 315 113 0 0 chrX 49077474 49077527 -127896613 + (CA)n Simple_repeat Simple_repeat 2 54 0 7205 202 46 59 chrX 49077527 49077555 -127896585 + L1M1 LINE L1 6720 6747 -818 25631 73 3 0 chrX 49077559 49081102 -127893038 + L1PA4 LINE L1 7 3559 -2587 11577 48 0 1 chrX 49081102 49083346 -127890794 + L1PA4 LINE L1 3926 6177 0 631 155 0 0 chrX 49083542 49083639 -127890501 - AluJ/FLAM SINE Alu -215 97 1 2022 144 4 32 chrX 49083870 49083907 -127890233 + L1MA5 LINE L1 5283 5319 -853 180 0 0 0 chrX 49083907 49083927 -127890213 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2022 144 4 32 chrX 49083927 49083969 -127890171 + L1MA5 LINE L1 5319 5361 -811 2166 111 6 35 chrX 49083969 49084284 -127889856 + AluSc SINE Alu 1 306 -3 2022 144 4 32 chrX 49084284 49084604 -127889536 + L1MA5 LINE L1 5361 5676 -496 790 215 239 0 chrX 49084607 49084900 -127889240 + L1MA5 LINE L1 5929 6291 -9 858 187 46 26 chrX 49084928 49085233 -127888907 + L1MDb LINE L1 1083 1393 -5016 * 955 282 86 2 chrX 49085225 49085484 -127888656 + L1M4 LINE L1 4382 4618 -1528 2124 92 0 24 chrX 49085484 49085777 -127888363 - AluSg SINE Alu -4 306 21 955 282 86 2 chrX 49085777 49085995 -127888145 + L1M4 LINE L1 4618 4899 -1247 345 97 0 16 chrX 49086070 49086132 -127888008 + L1MA5 LINE L1 6240 6300 0 249 139 0 0 chrX 49086194 49086237 -127887903 + (TA)n Simple_repeat Simple_repeat 1 43 0 252 232 0 42 chrX 49086240 49086335 -127887805 + L1MC4 LINE L1 6614 6704 -1338 319 210 0 0 chrX 49086335 49086397 -127887743 - L1MC4 LINE L1 -1341 6701 6640 1122 139 0 0 chrX 49086398 49086556 -127887584 - AluSp SINE Alu -9 304 147 357 49 59 137 chrX 49086557 49086613 -127887527 + L1P LINE L1 5273 5319 -849 2541 74 0 0 chrX 49086613 49086922 -127887218 + AluY SINE Alu 1 309 -2 357 49 59 137 chrX 49086922 49086967 -127887173 + L1P LINE L1 5319 5366 -802 3996 111 3 0 chrX 49086967 49087589 -127886551 + L1P LINE L1 1796 2419 -3727 617 209 0 0 chrX 49087635 49087769 -127886371 + MER3 DNA MER1_type 58 191 -18 546 167 120 0 chrX 49088400 49088508 -127885632 + MER63 DNA MER1_type 1 747 -315 309 51 0 0 chrX 49088598 49088637 -127885503 + (TG)n Simple_repeat Simple_repeat 1 39 0 1631 202 34 32 chrX 49088873 49089309 -127884831 + MER31B LTR ERV1 20 456 -10 2715 192 36 67 chrX 49089354 49090104 -127884036 + MER31B-int LTR ERV1 10 736 -4200 1776 195 68 14 chrX 49090105 49090617 -127883523 + MER31B-int LTR ERV1 874 1413 -3523 939 302 109 14 chrX 49090619 49091106 -127883034 - MER34 LTR ERV1 -2 540 8 750 246 59 41 chrX 49091114 49091172 -127882968 + MER31B-int LTR ERV1 1412 1467 -3469 1949 209 34 68 chrX 49091172 49091731 -127882409 + MER87 LTR ERV1 1 540 -1 750 246 59 41 chrX 49091731 49091815 -127882325 + MER31B-int LTR ERV1 1467 1548 -3388 1757 103 9 0 chrX 49091815 49092048 -127882092 + AluSp SINE Alu 1 235 -78 750 246 59 41 chrX 49092048 49092395 -127881745 + MER31B-int LTR ERV1 1548 1911 -3025 2134 92 3 40 chrX 49092409 49092713 -127881427 + AluSc SINE Alu 1 293 -16 3103 222 57 122 chrX 49092812 49094342 -127879798 + MER41B-int LTR ERV1 3328 4757 -179 521 110 0 0 chrX 49094342 49094415 -127879725 - MER41B LTR ERV1 -241 394 322 198 303 169 0 chrX 49094493 49094582 -127879558 - L2 LINE L2 -6 3266 3163 2201 95 6 9 chrX 49094582 49094909 -127879231 - MER41B LTR ERV1 -309 326 1 37 0 0 0 chrX 49096834 49096871 -127877269 + AT_rich Low_complexity Low_complexity 1 37 0 2373 239 52 33 chrX 49097103 49097641 -127876499 - L1ME1 LINE L1 -51 6115 5589 3698 157 16 2 chrX 49097641 49098267 -127875873 + MER41B LTR ERV1 1 635 0 2373 239 52 33 chrX 49098267 49098798 -127875342 - L1ME1 LINE L1 -577 5589 5032 2375 66 0 16 chrX 49098798 49099102 -127875038 + AluY SINE Alu 1 299 -12 2373 239 52 33 chrX 49099102 49099189 -127874951 - L1ME1 LINE L1 -1134 5032 4948 363 61 0 0 chrX 49099194 49099243 -127874897 - L1MA3 LINE L1 -463 5842 5794 1571 102 0 0 chrX 49099257 49099493 -127874647 + L1MA2 LINE L1 6068 6303 -1 3012 249 49 72 chrX 49099515 49099994 -127874146 - L1ME1 LINE L1 -1202 4944 4456 2204 75 3 11 chrX 49099994 49100301 -127873839 - AluY SINE Alu 0 305 1 3012 249 49 72 chrX 49100301 49101144 -127872996 - L1ME1 LINE L1 -1690 4456 3664 2107 178 30 2 chrX 49101144 49101577 -127872563 + LTR56 LTR ERV1 1 445 0 3012 249 49 72 chrX 49101577 49101902 -127872238 - L1ME1 LINE L1 -2482 3664 3333 2608 199 14 12 chrX 49101914 49102503 -127871637 - L1MB3 LINE L1 -15 6168 5579 6831 58 5 68 chrX 49102518 49104292 -127869848 + SVA Other Other 1 1386 0 280 229 14 0 chrX 49104553 49104623 -127869517 + HsTC2 DNA Tc2 3 73 -1825 234 164 10 144 chrX 49104661 49104765 -127869375 + LTR9 LTR ERV1 443 532 -80 616 157 33 0 chrX 49104776 49104897 -127869243 - L1MB3 LINE L1 -577 5591 5467 1768 183 128 54 chrX 49104897 49105437 -127868703 - LTR49 LTR ERV1 0 595 16 2449 261 19 21 chrX 49105442 49106213 -127867927 - L1MB3 LINE L1 -699 5481 4709 1333 235 26 7 chrX 49106213 49106515 -127867625 - AluJo SINE Alu -3 309 2 2449 261 19 21 chrX 49106515 49106779 -127867361 - L1MB3 LINE L1 -1471 4709 4446 976 196 52 131 chrX 49106806 49107301 -127866839 - MSTB2 LTR MaLR -1 456 1 1015 203 166 10 chrX 49107301 49107596 -127866544 - MSTB1-int LTR MaLR 0 1651 1311 655 124 0 0 chrX 49107603 49107700 -127866440 - L1PA16 LINE L1 -9 6157 6061 1325 130 0 45 chrX 49107724 49107970 -127866170 - MER57A-int LTR ERV1 0 7537 7303 278 214 31 41 chrX 49107972 49108070 -127866070 - LTR54B LTR ERV1 -337 161 65 10156 116 22 3 chrX 49108070 49109687 -127864453 - MER57A-int LTR ERV1 -1487 6050 4403 2135 173 14 0 chrX 49109662 49110027 -127864113 - MER57A-int LTR ERV1 -7167 370 1 * 2108 179 5 0 chrX 49110050 49110446 -127863694 - MER57A LTR ERV1 -5 398 1 370 318 23 0 chrX 49110448 49110577 -127863563 - MSTB1-int LTR MaLR -599 1052 921 1524 155 11 33 chrX 49110577 49110924 -127863216 + MER61C LTR ERV1 1 434 0 2301 248 43 74 chrX 49110932 49111055 -127863085 - MSTB1-int LTR MaLR -730 921 796 5528 58 26 13 chrX 49111055 49111811 -127862329 + MER4E LTR ERV1 1 766 0 2301 248 43 74 chrX 49111811 49112632 -127861508 - MSTB1-int LTR MaLR -855 796 6 290 243 28 35 chrX 49112618 49112635 -127861505 - L1MB3 LINE L1 -1709 4437 4421 * 1165 219 52 71 chrX 49112635 49113073 -127861067 - MSTB1 LTR MaLR -2 430 1 290 243 28 35 chrX 49113073 49113199 -127860941 - L1MB3 LINE L1 -1725 4421 4295 1477 276 40 28 chrX 49113199 49113391 -127860749 - L1MB3 LINE L1 -2449 3697 3509 2270 107 0 3 chrX 49113391 49113691 -127860449 - AluY SINE Alu -12 299 1 1477 276 40 28 chrX 49113691 49114196 -127859944 - L1MB3 LINE L1 -2637 3509 2988 3772 131 18 2 chrX 49114196 49114752 -127859388 - MER61E LTR ERV1 -4 565 1 1477 276 40 28 chrX 49114752 49114813 -127859327 - L1MB3 LINE L1 -3158 2988 2929 518 237 0 8 chrX 49114937 49115055 -127859085 - MER61E-int LTR ERV1 -195 6790 6674 * 1778 267 64 28 chrX 49115031 49115938 -127858202 - HERV17 LTR ERV1 -310 6675 6085 13859 186 24 13 chrX 49116261 49120329 -127853811 - HERV17 LTR ERV1 -937 6048 1957 3252 222 26 15 chrX 49120364 49121807 -127852333 - HERV17 LTR ERV1 -3053 1901 670 1714 212 62 21 chrX 49121928 49122446 -127851694 - HERV17 LTR ERV1 -6445 540 2 244 244 55 16 chrX 49122480 49122607 -127851533 - LTR46 LTR ERV1 -53 407 276 403 270 10 0 chrX 49122747 49122847 -127851293 - LTR46 LTR ERV1 -359 101 1 203 221 15 15 chrX 49123231 49123299 -127850841 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 23 0 0 0 chrX 49123370 49123393 -127850747 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 49123637 49123665 -127850475 + AT_rich Low_complexity Low_complexity 1 28 0 616 353 29 17 chrX 49123745 49124159 -127849981 + L1PA15-16 LINE L1 1 419 -6430 445 360 29 44 chrX 49124547 49125025 -127849115 + L1M2 LINE L1 727 1197 -5652 8411 246 51 26 chrX 49125112 49126307 -127847833 + L1M2 LINE L1 1479 2642 -4206 2569 53 0 0 chrX 49126307 49126609 -127847531 - AluY SINE Alu -9 302 1 8411 246 51 26 chrX 49126609 49127638 -127846502 + L1M2 LINE L1 2642 3644 -3204 396 0 0 0 chrX 49127638 49127682 -127846458 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 8411 246 51 26 chrX 49127682 49127789 -127846351 + L1M2 LINE L1 3644 3747 -3101 231 36 0 0 chrX 49127789 49127817 -127846323 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8411 246 51 26 chrX 49127817 49129457 -127844683 + L1M2 LINE L1 3747 5622 -1226 5250 210 47 38 chrX 49129477 49129757 -127844383 + L1PA15-16 LINE L1 1064 1340 -5509 195 100 0 0 chrX 49129757 49129787 -127844353 + (CTG)n Simple_repeat Simple_repeat 1 30 0 5250 210 47 38 chrX 49129787 49130041 -127844099 + L1PA15-16 LINE L1 1340 1590 -5259 4696 138 25 5 chrX 49130041 49130804 -127843336 + MER4E LTR ERV1 1 778 -1 5250 210 47 38 chrX 49130804 49132118 -127842022 + L1PA15-16 LINE L1 1590 2946 -3903 1155 198 51 0 chrX 49132125 49132378 -127841762 + L1PB4 LINE L1 5888 6153 -3 28 48 0 0 chrX 49132425 49132467 -127841673 + AT_rich Low_complexity Low_complexity 1 42 0 623 259 102 0 chrX 49132467 49132683 -127841457 - L1MB7 LINE L1 -17 6167 5930 1889 218 110 32 chrX 49132702 49133870 -127840270 - L1MB7 LINE L1 -317 5867 4590 462 194 93 65 chrX 49133925 49134064 -127840076 - MER21B LTR ERV1 -49 814 672 624 278 64 0 chrX 49134128 49134315 -127839825 - MER21B LTR ERV1 -191 672 474 36921 74 22 2 chrX 49134348 49140367 -127833773 - L1PA5 LINE L1 -5 6149 13 2273 300 19 46 chrX 49140380 49141191 -127832949 + L1PA13 LINE L1 1 789 -5998 3377 233 30 45 chrX 49141466 49142578 -127831562 + L1PA13 LINE L1 1289 2387 -4410 2015 134 23 54 chrX 49142578 49142965 -127831175 - THE1C LTR MaLR 0 375 1 3377 233 30 45 chrX 49142965 49143608 -127830532 + L1PA13 LINE L1 2387 3038 -3759 2339 236 39 3 chrX 49143624 49144309 -127829831 + L1PA13 LINE L1 3850 4559 -2238 1479 150 9 0 chrX 49144310 49144570 -127829570 - MER57A LTR ERV1 -129 305 15 468 241 0 0 chrX 49144588 49144700 -127829440 - MER57A-int LTR ERV1 -2 7535 7424 280 242 11 53 chrX 49144714 49144809 -127829331 - LTR54 LTR ERV1 -210 300 210 261 0 0 0 chrX 49144845 49144874 -127829266 + (A)n Simple_repeat Simple_repeat 1 29 0 510 173 58 0 chrX 49144911 49145015 -127829125 - LTR54 LTR ERV1 -387 123 14 5132 216 32 31 chrX 49145026 49146346 -127827794 - MER57A-int LTR ERV1 -392 7145 5825 446 147 13 0 chrX 49146676 49146751 -127827389 - MER57A-int LTR ERV1 -1716 5821 5746 202 150 25 0 chrX 49146757 49146797 -127827343 + A-rich Low_complexity Low_complexity 2 42 0 380 324 59 0 chrX 49147111 49147281 -127826859 - L3b LINE CR1 -118 1465 1286 1817 283 11 15 chrX 49147453 49148241 -127825899 - L1M4 LINE L1 -3188 2958 2174 4949 182 24 16 chrX 49148244 49149010 -127825130 - L1MA4A LINE L1 -7 6998 6240 2247 107 3 0 chrX 49149010 49149318 -127824822 + AluY SINE Alu 1 309 -2 4949 182 24 16 chrX 49149318 49150088 -127824052 - L1MA4A LINE L1 -765 6240 5451 1749 230 19 12 chrX 49150096 49150509 -127823631 - MSTB1 LTR MaLR -14 418 3 2362 228 22 4 chrX 49150511 49150853 -127823287 - L1MA4A LINE L1 -1392 5456 5121 2600 162 53 66 chrX 49150853 49151471 -127822669 + MER4B LTR ERV1 1 610 0 2362 228 22 4 chrX 49151471 49151812 -127822328 - L1MA4A LINE L1 -1727 5121 4761 1536 211 62 49 chrX 49151846 49152297 -127821843 + LTR2B LTR ERV1 34 490 0 2343 139 8 13 chrX 49152297 49152684 -127821456 + Harlequin LTR ERV1 1 385 -6511 765 92 17 0 chrX 49152680 49152800 -127821340 + Harlequin LTR ERV1 264 385 -6511 * 7621 63 14 43 chrX 49152795 49153986 -127820154 + Harlequin LTR ERV1 263 1419 -5477 * 37136 67 13 9 chrX 49153970 49159040 -127815100 + Harlequin LTR ERV1 1807 6896 0 1563 201 94 35 chrX 49159041 49159498 -127814642 + LTR2B LTR ERV1 7 490 0 2236 217 32 38 chrX 49159502 49159934 -127814206 - L1MA4A LINE L1 -2097 4751 4318 2288 98 3 0 chrX 49159934 49160230 -127813910 - AluY SINE Alu -14 297 1 2236 217 32 38 chrX 49160230 49160278 -127813862 - L1MA4A LINE L1 -2530 4318 4271 1913 109 40 65 chrX 49160278 49160599 -127813541 - AluSq SINE Alu 0 313 1 2236 217 32 38 chrX 49160599 49160827 -127813313 - L1MA4A LINE L1 -2577 4271 4046 2587 155 80 13 chrX 49160830 49161395 -127812745 - MER4B LTR ERV1 0 779 1 2825 236 70 10 chrX 49161430 49162429 -127811711 - L1MA4A LINE L1 -2852 3996 2938 255 244 22 0 chrX 49162463 49162553 -127811587 + L1MC4 LINE L1 6612 6703 -1339 180 111 0 0 chrX 49162554 49162581 -127811559 + (TA)n Simple_repeat Simple_repeat 1 27 0 407 161 21 0 chrX 49162581 49162674 -127811466 - L1MA4A LINE L1 -3950 2899 2805 21 82 0 0 chrX 49162786 49162835 -127811305 + AT_rich Low_complexity Low_complexity 1 49 0 235 330 43 53 chrX 49162961 49163243 -127810897 + L1M3b LINE L1 1364 1642 -5854 213 227 23 0 chrX 49163661 49163705 -127810435 + CT-rich Low_complexity Low_complexity 2 46 0 1007 225 111 17 chrX 49164479 49165142 -127808998 + L1M3b LINE L1 3342 4063 -3502 1956 157 15 22 chrX 49165147 49165556 -127808584 + L1M3b LINE L1 5341 5746 -1819 1312 81 0 23 chrX 49165558 49165767 -127808373 - AluSc SINE Alu 0 316 112 436 292 27 40 chrX 49165854 49166089 -127808051 - L1ME LINE L1 -461 5660 5427 207 0 0 0 chrX 49166197 49166220 -127807920 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 279 54 0 0 chrX 49166223 49166260 -127807880 + (TG)n Simple_repeat Simple_repeat 1 37 0 17861 99 17 3 chrX 49366311 49368766 -127605374 - HERVL LTR ERVL -1118 4536 2049 572 112 22 0 chrX 49368766 49368855 -127605285 - THE1A-int LTR MaLR -1489 91 1 1812 147 37 37 chrX 49368855 49369210 -127604930 - THE1A LTR MaLR 0 355 1 1587 225 14 19 chrX 49369338 49369702 -127604438 - MLT1A1 LTR MaLR -3 362 1 319 354 50 38 chrX 49369978 49370218 -127603922 - MIR SINE MIR -18 244 2 663 299 58 11 chrX 49370370 49370631 -127603509 + MLT1L LTR MaLR 1 273 -342 15840 45 0 27 chrX 49370763 49373543 -127600597 + L1PA5 LINE L1 3394 6153 -1 656 323 49 37 chrX 49374481 49374806 -127599334 - L2 LINE L2 -33 3280 2952 339 272 60 54 chrX 49375278 49375467 -127598673 + MIR SINE MIR 38 232 -30 189 74 0 0 chrX 49376099 49376126 -127598014 + (TC)n Simple_repeat Simple_repeat 2 28 0 353 229 104 0 chrX 49377563 49377659 -127596481 - MIR SINE MIR -83 179 74 511 345 30 25 chrX 49378979 49379214 -127594926 + MIR SINE MIR 20 255 -7 306 293 21 71 chrX 49379277 49379417 -127594723 - MIR SINE MIR -122 140 8 216 362 74 85 chrX 49380380 49380828 -127593312 - L2 LINE L2 -3 3269 2827 5546 262 84 23 chrX 49381057 49381179 -127592961 + L1MB8 LINE L1 89 202 -6757 2116 166 22 0 chrX 49381179 49381535 -127592605 + THE1B LTR MaLR 1 364 0 5546 262 84 23 chrX 49381535 49383185 -127590955 + L1MB8 LINE L1 202 2010 -4949 5674 119 12 16 chrX 49383185 49384519 -127589621 + L1PA10 LINE L1 4836 6168 0 5546 262 84 23 chrX 49384519 49384907 -127589233 + L1MB8 LINE L1 2010 2373 -4586 273 217 11 43 chrX 49384895 49384987 -127589153 + L1MB3 LINE L1 5879 5967 -217 * 9692 126 23 32 chrX 49384980 49387299 -127586841 + L1PA7 LINE L1 364 2708 -3753 14723 112 8 23 chrX 49387300 49390423 -127583717 + L1PA7 LINE L1 3377 6469 0 282 280 19 9 chrX 49390481 49390588 -127583552 + L1MB3 LINE L1 6069 6176 -7 1945 251 49 23 chrX 49390597 49391470 -127582670 + L1MB8 LINE L1 3838 4733 -2224 2790 251 46 12 chrX 49391535 49392644 -127581496 + L1MB8 LINE L1 5830 6984 -5 300 226 75 0 chrX 49392645 49392738 -127581402 + L1M4b LINE L1 5197 5296 -1661 791 196 52 12 chrX 49392738 49392911 -127581229 + L1M1 LINE L1 13 192 -7373 1080 131 170 18 chrX 49392911 49393140 -127581000 + MER21A LTR ERV1 1 264 -667 2930 191 39 7 chrX 49393145 49393684 -127580456 + MER21A LTR ERV1 376 931 0 6016 170 22 17 chrX 49393744 49394855 -127579285 + MER4B-int LTR ERV1 3086 4202 -2556 915 189 7 0 chrX 49395352 49395495 -127578645 - AluJb SINE Alu -55 257 114 7304 237 20 15 chrX 49395678 49397316 -127576824 + L1PA12 LINE L1 13 2430 -5154 1135 203 28 0 chrX 49397313 49397525 -127576615 - L1M1 LINE L1 -7218 347 130 * 5767 180 14 19 chrX 49397523 49399765 -127574375 + L1MA4A LINE L1 4070 6303 0 2850 119 34 30 chrX 49402150 49402687 -127571453 - L1MA3 LINE L1 0 6305 5767 * 5632 114 45 8 chrX 49402679 49404364 -127569776 - L1PA13 LINE L1 0 6163 4440 1175 14 14 0 chrX 49404364 49404505 -127569635 - L1PA4 LINE L1 -2 6153 6011 6596 157 29 14 chrX 49404511 49405767 -127568373 - L1PA13 LINE L1 -1721 4425 3152 1819 174 11 14 chrX 49405861 49406217 -127567923 - L1MB3 LINE L1 -237 6532 6178 1136 174 36 8 chrX 49406222 49406469 -127567671 - L1MA9 LINE L1 -38 6274 6021 3648 275 74 41 chrX 49406564 49407306 -127566834 - L1M4c LINE L1 -4518 2057 1341 239 0 32 0 chrX 49407306 49407337 -127566803 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3648 275 74 41 chrX 49407337 49408366 -127565774 - L1M4c LINE L1 -5234 1341 436 3076 226 31 29 chrX 49408366 49409524 -127564616 - L1MB3 LINE L1 -570 6196 5033 311 43 0 22 chrX 49409569 49409615 -127564525 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 32131 46 3 0 chrX 49409615 49414412 -127559728 - L1PA3 LINE L1 -24 6131 1323 1866 271 44 36 chrX 49414413 49415389 -127558751 - L1MB3 LINE L1 -1703 5029 4046 240 242 48 32 chrX 49415478 49415540 -127558600 - L1MB3 LINE L1 -5251 1402 1340 333 313 76 62 chrX 49415635 49415859 -127558281 - L1M4c LINE L1 -6302 240 14 598 340 54 23 chrX 49415926 49416279 -127557861 + L1MDb LINE L1 16 379 -6030 1049 219 40 20 chrX 49416288 49416585 -127557555 + L1MDb LINE L1 872 1174 -5235 20720 156 17 83 chrX 49416585 49421285 -127552855 + L1PA8 LINE L1 4 4396 -1750 6607 35 0 1 chrX 49421286 49422080 -127552060 - L1PA3 LINE L1 0 6155 5363 6684 97 10 1 chrX 49422080 49423813 -127550327 + L1PA8 LINE L1 4415 6154 -18 342 194 0 0 chrX 49423813 49423885 -127550255 + (TA)n Simple_repeat Simple_repeat 1 72 0 277 289 0 0 chrX 49423888 49423978 -127550162 - L1MC4 LINE L1 -1339 6703 6614 * 278 267 0 0 chrX 49423914 49424004 -127550136 + L1MC4 LINE L1 6614 6703 -1339 318 287 23 0 chrX 49424007 49424094 -127550046 + L1MC4 LINE L1 6615 6703 -1339 235 128 0 0 chrX 49424104 49424151 -127549989 + LTR66 LTR ERVL 394 440 -170 3232 232 67 56 chrX 49424157 49425009 -127549131 + L1P LINE L1 2827 3698 -2448 195 69 0 0 chrX 49425009 49425038 -127549102 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3232 232 67 56 chrX 49425038 49425419 -127548721 + L1P LINE L1 3698 4073 -2073 20602 108 11 59 chrX 49425420 49429347 -127544793 + L1PA15 LINE L1 2059 5789 -376 621 155 4 40 chrX 49429349 49429578 -127544562 + (TA)n Simple_repeat Simple_repeat 1 220 0 198 0 0 0 chrX 49429591 49429613 -127544527 + (CA)n Simple_repeat Simple_repeat 2 23 0 1916 173 14 8 chrX 49429616 49429985 -127544155 + L1PA15 LINE L1 5795 6165 0 887 268 29 29 chrX 49429986 49430367 -127543773 + L1M4 LINE L1 2970 3350 -2796 828 223 85 10 chrX 49430368 49430801 -127543339 - LTR54B LTR ERV1 -2 496 1 1909 247 45 27 chrX 49430805 49431473 -127542667 + L1M4 LINE L1 3352 4031 -2115 5079 95 60 42 chrX 49431473 49432284 -127541856 - LTR12 LTR ERV1 0 826 1 672 263 35 48 chrX 49432470 49432759 -127541381 - pTR5 LTR ERV1 -1410 1028 744 503 293 0 6 chrX 49432759 49432923 -127541217 + L1M4 LINE L1 4027 4189 -1957 503 303 81 23 chrX 49432986 49433207 -127540933 + MIR SINE MIR 2 235 -27 254 239 158 0 chrX 49433363 49433452 -127540688 - MIR SINE MIR -47 161 60 620 255 20 7 chrX 49433535 49433688 -127540452 - MIR SINE MIR -58 204 50 714 257 131 5 chrX 49433822 49434044 -127540096 + MIR SINE MIR 4 253 -9 645 280 42 19 chrX 49434075 49434289 -127539851 + L2 LINE L2 3095 3313 0 268 286 39 3 chrX 49434413 49434527 -127539613 - MIR3 SINE MIR -27 181 63 199 319 21 53 chrX 49435282 49435376 -127538764 - MIR3 SINE MIR -3 205 115 478 256 67 67 chrX 49435538 49435718 -127538422 - MIR SINE MIR -72 190 11 269 273 0 0 chrX 49435811 49435877 -127538263 - MIR SINE MIR -60 148 83 2177 219 25 35 chrX 49436097 49436664 -127537476 - L1MA10 LINE L1 -1 6333 5773 12638 174 27 42 chrX 49436673 49438647 -127535493 - L1MA2 LINE L1 0 7723 5721 1837 137 74 0 chrX 49438647 49438931 -127535209 - AluSx SINE Alu -7 305 1 12638 174 27 42 chrX 49438931 49441776 -127532364 - L1MA2 LINE L1 -2002 5721 2977 519 156 0 0 chrX 49441786 49441876 -127532264 + L1P LINE L1 5141 5230 -916 1273 88 0 0 chrX 49441896 49442066 -127532074 - L1PA8 LINE L1 -3 6169 6000 711 43 11 0 chrX 49442066 49442158 -127531982 + L1PA8 LINE L1 5880 5972 -200 * 1615 133 6 70 chrX 49442157 49442242 -127531898 - L1MA2 LINE L1 -4578 2987 2898 197 33 33 0 chrX 49442242 49442272 -127531868 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1592 206 7 0 chrX 49442274 49442565 -127531575 - AluSq SINE Alu -20 293 1 1615 133 6 70 chrX 49442565 49442792 -127531348 - L1MA2 LINE L1 -4668 2897 2692 396 0 0 0 chrX 49442794 49442838 -127531302 + (TA)n Simple_repeat Simple_repeat 1 44 0 246 306 28 0 chrX 49442863 49442935 -127531205 + L2 LINE L2 3203 3276 -37 * 366 303 60 65 chrX 49442921 49443106 -127531034 - MIR SINE MIR -51 211 28 379 328 39 8 chrX 49443627 49443781 -127530359 + MIR SINE MIR 20 181 -67 433 281 7 43 chrX 49444281 49444420 -127529720 - L2 LINE L2 0 3313 3180 5312 168 16 16 chrX 49444432 49445405 -127528735 + Tigger1 DNA MER2_type 1 973 -1445 503 180 0 36 chrX 49445406 49445517 -127528623 - L1PA15 LINE L1 -2 6163 6057 2288 168 0 0 chrX 49445519 49445877 -127528263 - THE1B LTR MaLR -6 358 1 709 148 26 0 chrX 49445877 49445992 -127528148 - L1PA15 LINE L1 -106 6059 5942 8491 139 16 3 chrX 49445992 49446232 -127527908 + Tigger1 DNA MER2_type 959 1194 -1224 7220 44 3 1 chrX 49446232 49447317 -127526823 + L1PA4 LINE L1 5069 6155 0 8491 139 16 3 chrX 49447317 49448458 -127525682 + Tigger1 DNA MER2_type 1194 2358 -60 201 369 60 27 chrX 49448496 49448645 -127525495 - MIR SINE MIR -108 154 1 885 205 25 90 chrX 49448753 49448997 -127525143 - MIR SINE MIR -24 238 11 278 274 75 38 chrX 49449057 49449176 -127524964 + MIR SINE MIR 3 133 -75 208 369 0 0 chrX 49449734 49449799 -127524341 + polypurine Low_complexity Low_complexity 1 65 0 322 196 0 0 chrX 49450118 49450174 -127523966 + L2 LINE L2 3255 3310 -3 470 273 15 23 chrX 49450204 49450336 -127523804 - MIR3 SINE MIR -73 135 5 558 275 29 0 chrX 49450543 49450681 -127523459 + MIR3 SINE MIR 64 205 -3 203 365 95 29 chrX 49450740 49450877 -127523263 + L3 LINE CR1 147 292 -1285 282 286 0 0 chrX 49450877 49450940 -127523200 - MER2 DNA MER2_type -1 344 282 207 0 0 0 chrX 49450946 49450969 -127523171 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 1770 193 0 0 chrX 49450974 49451279 -127522861 + AluSx SINE Alu 1 305 -7 8119 113 68 2 chrX 49451285 49452565 -127521575 - L1PA7 LINE L1 -3329 2817 1454 16226 115 7 5 chrX 49452565 49454187 -127519953 + L1PA7 LINE L1 2825 4442 -1728 2385 54 0 14 chrX 49454187 49454483 -127519657 + AluY SINE Alu 1 292 -19 16226 115 7 5 chrX 49454483 49456202 -127517938 + L1PA7 LINE L1 4442 6170 0 585 200 30 145 chrX 49456243 49456478 -127517662 - MER2 DNA MER2_type -134 211 4 1664 273 86 99 chrX 49456481 49457779 -127516361 + L3 LINE CR1 291 1570 -7 231 246 42 114 chrX 49458336 49458503 -127515637 + L1MC4a LINE L1 5805 5959 -1849 913 253 80 47 chrX 49458522 49458942 -127515198 + MER66A LTR ERV1 59 431 -47 202 341 44 55 chrX 49459679 49459861 -127514279 + L2 LINE L2 2920 3099 -173 711 211 16 89 chrX 49460262 49460508 -127513632 - L2 LINE L2 0 3313 3086 859 264 37 76 chrX 49460529 49460935 -127513205 + MLT1B LTR MaLR 1 390 0 889 294 193 29 chrX 49460935 49461627 -127512513 - L2 LINE L2 -249 3064 2260 1424 208 68 0 chrX 49461722 49461986 -127512154 + AluJb SINE Alu 1 282 -30 224 48 24 48 chrX 49461986 49462028 -127512112 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 13488 51 0 6 chrX 49462255 49463982 -127510158 + HERV17 LTR ERV1 4302 6018 -2608 276 77 0 0 chrX 49463976 49464015 -127510125 + HERV17 LTR ERV1 7510 7548 -1078 * 2144 87 0 0 chrX 49464005 49464293 -127509847 + HERV17 LTR ERV1 8335 8622 -4 1570 62 111 0 chrX 49464296 49464521 -127509619 + LTR17 LTR ERV1 1 250 -530 261 0 0 0 chrX 49464522 49464551 -127509589 + (A)n Simple_repeat Simple_repeat 1 29 0 12704 187 180 6 chrX 49464978 49468015 -127506125 + L1MA1 LINE L1 12 3575 -3990 11176 186 34 15 chrX 49467999 49469333 -127504807 + L1MA1 LINE L1 3815 5122 -2599 * 7346 32 20 0 chrX 49469333 49470438 -127503702 + L1PA3 LINE L1 5033 6155 0 11176 186 34 15 chrX 49470438 49472925 -127501215 + L1MA1 LINE L1 5122 7715 -6 230 210 81 73 chrX 49473082 49473206 -127500934 + MLT1L LTR MaLR 483 607 -8 741 131 0 0 chrX 49473521 49473643 -127500497 - L1MA1 LINE L1 -304 5998 5877 2364 89 6 19 chrX 49474201 49474514 -127499626 + AluSg SINE Alu 1 309 -1 266 100 43 14 chrX 49474848 49474918 -127499222 - L1MA1 LINE L1 -1006 5338 5267 990 200 0 0 chrX 49474994 49475154 -127498986 - FRAM SINE Alu -20 156 1 217 68 45 0 chrX 49475156 49475200 -127498940 + (TA)n Simple_repeat Simple_repeat 1 46 0 330 286 0 11 chrX 49475201 49475292 -127498848 - L1MC4 LINE L1 -1339 6703 6614 445 214 0 30 chrX 49475292 49475423 -127498717 + (CATATA)n Simple_repeat Simple_repeat 2 128 0 311 296 23 0 chrX 49475424 49475512 -127498628 - L1MC4 LINE L1 -1339 6703 6614 318 266 0 43 chrX 49475546 49475640 -127498500 - L1MC4 LINE L1 -1339 6703 6614 258 176 0 0 chrX 49475645 49475696 -127498444 + (CATA)n Simple_repeat Simple_repeat 3 53 0 359 289 0 0 chrX 49475696 49475786 -127498354 - L1MC4 LINE L1 -1339 6703 6614 204 40 0 0 chrX 49475800 49475825 -127498315 + (CA)n Simple_repeat Simple_repeat 2 26 0 616 171 8 17 chrX 49475830 49475947 -127498193 - FLAM_C SINE Alu -27 116 1 250 247 0 13 chrX 49475956 49476033 -127498107 - L1MDb LINE L1 -878 5528 5453 5646 246 47 7 chrX 49477471 49479315 -127494825 - L1MDb LINE L1 -1260 5146 3230 1403 246 18 5 chrX 49479607 49480046 -127494094 - L1MDb LINE L1 -3113 3293 2849 * 2001 228 57 39 chrX 49480039 49480289 -127493851 - L1MDb LINE L1 -4444 1962 1718 2136 138 6 3 chrX 49480289 49480600 -127493540 + AluSx SINE Alu 1 312 0 2001 228 57 39 chrX 49480600 49481171 -127492969 - L1MDb LINE L1 -4688 1718 1126 1625 174 45 48 chrX 49481177 49481551 -127492589 + THE1C LTR MaLR 3 375 0 7874 155 77 18 chrX 49481555 49483043 -127491097 + THE1C-int LTR MaLR 5 1580 0 1772 169 38 32 chrX 49483043 49483333 -127490807 + THE1C LTR MaLR 1 295 -80 1950 147 16 45 chrX 49483333 49483708 -127490432 + THE1B LTR MaLR 1 364 0 1772 169 38 32 chrX 49483708 49483790 -127490350 + THE1C LTR MaLR 295 375 0 1097 289 176 13 chrX 49483790 49484578 -127489562 - L1MDb LINE L1 -5282 1127 77 199 395 59 0 chrX 49484631 49484750 -127489390 - L2 LINE L2 -599 2715 2590 3895 138 30 4 chrX 49484761 49485455 -127488685 - L1MA2 LINE L1 0 6304 5593 14728 189 45 20 chrX 49485461 49490039 -127484101 - L1PA14 LINE L1 -12 7587 2904 6518 190 19 5 chrX 49490033 49491702 -127482438 - L1PA14 LINE L1 -5602 1979 1 * 3754 146 29 1 chrX 49491704 49492723 -127481417 - L1M1 LINE L1 -696 5606 4556 194 311 81 14 chrX 49492766 49492840 -127481300 - L2 LINE L2 -740 2574 2496 282 258 58 33 chrX 49493531 49493651 -127480489 + MIR SINE MIR 32 154 -108 448 232 30 85 chrX 49495489 49495653 -127478487 + L3 LINE CR1 1213 1367 -210 626 259 0 70 chrX 49496140 49496341 -127477799 + MIR SINE MIR 76 262 0 211 318 77 20 chrX 49496569 49496688 -127477452 + MIR SINE MIR 35 159 -49 284 193 40 7 chrX 49496753 49496903 -127477237 + (TA)n Simple_repeat Simple_repeat 2 156 0 206 182 23 0 chrX 49497400 49497444 -127476696 + (TA)n Simple_repeat Simple_repeat 1 45 0 1852 114 0 0 chrX 49497444 49497698 -127476442 - L1PB3 LINE L1 -6 6148 5895 844 354 143 22 chrX 49498324 49499547 -127474593 + L2 LINE L2 223 1671 -1643 22 0 0 0 chrX 49499919 49499941 -127474199 + AT_rich Low_complexity Low_complexity 1 22 0 586 212 85 0 chrX 49500500 49500618 -127473522 + AluJo/FLAM SINE Alu 2 129 -173 1711 189 0 31 chrX 49500621 49500943 -127473197 + AluJo SINE Alu 1 312 0 1547 93 4 80 chrX 49501749 49501986 -127472154 + AluY SINE Alu 78 296 -15 285 29 0 0 chrX 49502863 49502897 -127471243 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 376 381 66 34 chrX 49502925 49503274 -127470866 + L2 LINE L2 2566 2925 -389 238 235 174 61 chrX 49504754 49504852 -127469288 - L3b LINE CR1 -130 1453 1345 270 358 45 41 chrX 49505797 49506115 -127468025 + L2 LINE L2 2866 3265 -7 321 303 84 34 chrX 49506149 49506268 -127467872 - MIR SINE MIR -65 143 19 182 62 31 0 chrX 49506270 49506302 -127467838 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 561 356 63 43 chrX 49507018 49507574 -127466566 + L2 LINE L2 2130 2696 -618 3274 191 36 35 chrX 49507574 49509056 -127465084 - L1MB8 LINE L1 0 6178 4675 1685 299 99 24 chrX 49509253 49510079 -127464061 + L2 LINE L2 2161 3057 -256 3054 190 17 38 chrX 49510098 49510532 -127463608 + L1MD2 LINE L1 5254 5670 -689 1728 167 4 0 chrX 49510532 49510796 -127463344 + AluSx SINE Alu 20 284 -28 3054 190 17 38 chrX 49510796 49511049 -127463091 + L1MD2 LINE L1 5670 5927 -432 377 240 21 0 chrX 49511198 49511294 -127462846 + L1ME1 LINE L1 6043 6140 -26 352 269 109 29 chrX 49511432 49511607 -127462533 - L2 LINE L2 0 3313 3125 305 375 90 20 chrX 49511783 49511824 -127462316 + L2 LINE L2 1071 1108 -2206 662 242 16 26 chrX 49511824 49512014 -127462126 + MER5A DNA MER1_type 1 188 -1 305 375 90 20 chrX 49512014 49512316 -127461824 + L2 LINE L2 1108 1438 -1876 406 287 92 37 chrX 49512336 49512500 -127461640 - MIR SINE MIR -85 177 5 427 335 19 15 chrX 49512578 49512784 -127461356 + L2 LINE L2 1236 1442 -1872 3755 191 40 0 chrX 49512815 49513518 -127460622 - MER44D DNA MER2_type 0 605 3 204 325 16 78 chrX 49513533 49513724 -127460416 - L2 LINE L2 -1659 1655 1477 542 194 225 0 chrX 49513738 49513867 -127460273 + MER3 DNA MER1_type 47 204 -5 331 347 64 12 chrX 49513885 49514058 -127460082 + L2 LINE L2 1695 1876 -1438 2559 210 47 25 chrX 49514067 49514786 -127459354 + L1M4c LINE L1 921 1655 -4729 364 309 54 60 chrX 49514788 49515157 -127458983 + L1PA12 LINE L1 1 367 -7214 6671 37 0 0 chrX 49515837 49516665 -127457475 - L1P LINE L1 -3280 2866 2039 4199 245 30 26 chrX 49516849 49518321 -127455819 + L1PA12 LINE L1 2403 3878 -3706 * 4296 179 39 19 chrX 49518319 49519944 -127454196 - L1PA15 LINE L1 -134 6734 5079 2656 242 10 10 chrX 49519956 49520646 -127453494 - L1PA15 LINE L1 -3529 3320 2631 834 165 0 0 chrX 49520657 49520784 -127453356 - AluSq/x SINE Alu -183 129 3 263 238 0 0 chrX 49520791 49520854 -127453286 - L1PA15 LINE L1 -4430 2419 2357 * 1558 275 48 10 chrX 49520850 49521729 -127452411 - L1MCc LINE L1 -4667 2455 1344 571 232 72 42 chrX 49521712 49521949 -127452191 + L1ME1 LINE L1 5903 6146 -20 * 22 0 0 0 chrX 49521950 49521972 -127452168 + AT_rich Low_complexity Low_complexity 1 22 0 1606 233 26 0 chrX 49522230 49522535 -127451605 + L1PA13 LINE L1 54 366 -6473 3409 78 7 5 chrX 49522535 49522982 -127451158 + MER9 LTR ERVK 1 448 -63 716 169 10 1 chrX 49522982 49523129 -127451011 + L1PA13 LINE L1 2385 2544 -4305 207 0 0 0 chrX 49523129 49523152 -127450988 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 660 156 9 9 chrX 49523153 49523262 -127450878 - FRAM SINE Alu -32 144 36 11809 186 25 20 chrX 49523262 49525792 -127448348 + L1PA13 LINE L1 2535 5078 -1771 225 0 0 0 chrX 49525794 49525819 -127448321 + (CATTC)n Simple_repeat Simple_repeat 2 26 0 5121 118 42 21 chrX 49525820 49526747 -127447393 + L1PA13 LINE L1 5168 6141 -755 1931 138 0 39 chrX 49526747 49527052 -127447088 + AluSx SINE Alu 1 293 -19 5121 118 42 21 chrX 49527052 49527824 -127446316 + L1PA13 LINE L1 6141 6896 0 21 36 0 0 chrX 49527947 49527975 -127446165 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chrX 49528944 49528982 -127445158 + AT_rich Low_complexity Low_complexity 1 38 0 15077 29 0 0 chrX 49529357 49531921 -127442219 + L1PA2 LINE L1 3592 6155 0 2822 80 0 3 chrX 49532087 49532462 -127441678 - L1PB1 LINE L1 -2 6865 6492 231 218 0 0 chrX 49532463 49532518 -127441622 + (TA)n Simple_repeat Simple_repeat 1 55 0 5173 216 124 18 chrX 49532519 49533338 -127440802 - L1PB1 LINE L1 -360 6507 5776 1722 163 59 42 chrX 49533338 49533695 -127440445 + THE1B LTR MaLR 2 364 0 5173 216 124 18 chrX 49533695 49535394 -127438746 - L1PB1 LINE L1 -1091 5776 3708 1745 201 93 32 chrX 49535394 49535856 -127438284 + LTR2B LTR ERV1 1 490 0 44130 69 15 17 chrX 49535856 49542682 -127431458 + Harlequin LTR ERV1 1 6896 0 1979 196 84 26 chrX 49542682 49543145 -127430995 + LTR2B LTR ERV1 1 490 0 11396 136 127 7 chrX 49543158 49545890 -127428250 - L1PB1 LINE L1 -3167 3695 637 1074 148 53 0 chrX 49545893 49546082 -127428058 - L1PB1 LINE L1 -6663 200 2 587 322 102 22 chrX 49546361 49547274 -127426866 + L1M4 LINE L1 4246 5231 -915 469 229 92 0 chrX 49547349 49547480 -127426660 + L2 LINE L2 2495 2637 -677 421 174 23 0 chrX 49547481 49547567 -127426573 + L2 LINE L2 2154 2241 -1073 240 222 12 0 chrX 49548123 49548204 -127425936 + L1MA4A LINE L1 4386 4467 -1679 1175 8 0 0 chrX 49548205 49548338 -127425802 - L1PA3 LINE L1 -328 5827 5695 2737 30 0 9 chrX 49548338 49548665 -127425475 + L1PA3 LINE L1 5829 6155 0 24 0 0 0 chrX 49548665 49548689 -127425451 + AT_rich Low_complexity Low_complexity 1 24 0 4846 167 41 9 chrX 49548689 49548910 -127425230 + L1MA4A LINE L1 4457 4670 -1633 204 40 0 0 chrX 49548910 49548935 -127425205 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 4846 167 41 9 chrX 49548935 49550419 -127423721 + L1MA4A LINE L1 4670 6280 -23 754 279 37 101 chrX 49550550 49551066 -127423074 + L2 LINE L2 2167 2649 -665 544 325 43 0 chrX 49551089 49551298 -127422842 + L2 LINE L2 612 829 -2485 929 338 84 41 chrX 49551322 49552033 -127422107 + L2 LINE L2 1793 2534 -780 844 237 69 6 chrX 49552230 49552403 -127421737 + MER5A DNA MER1_type 6 189 0 474 361 114 7 chrX 49552403 49552680 -127421460 + L2 LINE L2 3007 3313 0 480 35 0 0 chrX 49553018 49553076 -127421064 + (TA)n Simple_repeat Simple_repeat 2 59 0 1936 148 4 0 chrX 49553076 49553354 -127420786 - AluSx SINE Alu -28 284 6 21 0 0 0 chrX 49553592 49553613 -127420527 + AT_rich Low_complexity Low_complexity 1 21 0 2329 83 0 43 chrX 49554635 49554962 -127419178 - AluSp SINE Alu 0 313 1 1977 162 0 13 chrX 49555030 49555345 -127418795 + AluSx SINE Alu 2 312 0 212 258 48 0 chrX 49555804 49555866 -127418274 - MIR3 SINE MIR -46 162 98 277 108 21 0 chrX 49555869 49555934 -127418206 + L1PA16 LINE L1 5263 5329 -825 1172 122 0 0 chrX 49555939 49556095 -127418045 + AluSg/x SINE Alu 138 293 -17 2953 103 79 4 chrX 49556099 49556567 -127417573 + L1PA16 LINE L1 5655 6157 -9 1073 160 10 25 chrX 49556586 49556786 -127417354 + L1PA16 LINE L1 5968 6164 -2 21 0 0 0 chrX 49556822 49556843 -127417297 + AT_rich Low_complexity Low_complexity 1 21 0 974 288 31 20 chrX 49557318 49557750 -127416390 + MLT1J LTR MaLR 2 481 -30 254 323 16 79 chrX 49557951 49558078 -127416062 + MIR SINE MIR 25 143 -65 436 248 86 0 chrX 49558579 49558684 -127415456 - MER81 DNA DNA 0 114 1 365 250 11 11 chrX 49558691 49558783 -127415357 + L1MC4 LINE L1 6610 6701 -1341 375 258 73 8 chrX 49558794 49558918 -127415222 + MIR SINE MIR 88 219 -43 267 369 26 41 chrX 49559346 49559614 -127414526 + L2 LINE L2 2808 3071 -201 413 304 112 0 chrX 49559767 49559928 -127414212 + L2 LINE L2 2469 2647 -667 206 216 14 0 chrX 49560250 49560324 -127413816 + GA-rich Low_complexity Low_complexity 2 76 0 192 40 0 0 chrX 49560436 49560461 -127413679 + (CA)n Simple_repeat Simple_repeat 1 25 0 288 0 0 0 chrX 49561422 49561454 -127412686 + (CA)n Simple_repeat Simple_repeat 2 33 0 234 296 34 0 chrX 49561465 49561553 -127412587 + L2 LINE L2 1984 2074 -1240 272 293 49 0 chrX 49561629 49561752 -127412388 + L2 LINE L2 2553 2681 -633 290 333 64 50 chrX 49562029 49562170 -127411970 + L2 LINE L2 3125 3267 -5 860 216 16 16 chrX 49563223 49563408 -127410732 - MIR SINE MIR -7 255 71 313 92 0 62 chrX 49563487 49563552 -127410588 + (GGGAGA)n Simple_repeat Simple_repeat 5 65 0 199 323 55 55 chrX 49564127 49564254 -127409886 + MIR SINE MIR 2 128 -134 444 321 109 31 chrX 49564255 49564448 -127409692 - L3 LINE CR1 -3 1574 1367 224 122 24 0 chrX 49564474 49564515 -127409625 + (TA)n Simple_repeat Simple_repeat 1 42 0 583 250 36 83 chrX 49564877 49565221 -127408919 + L1MC/D LINE L1 5387 5717 -462 283 206 111 8 chrX 49565276 49565402 -127408738 - L1MC4 LINE L1 0 8042 7904 304 286 257 20 chrX 49565489 49565734 -127408406 - L1MC4 LINE L1 -233 7809 7507 546 299 45 17 chrX 49565825 49566116 -127408024 + L1ME4a LINE L1 5621 5919 -202 29 70 0 0 chrX 49566233 49566290 -127407850 + AT_rich Low_complexity Low_complexity 1 57 0 188 159 0 23 chrX 49566652 49566696 -127407444 + GA-rich Low_complexity Low_complexity 4 46 0 291 304 30 65 chrX 49566791 49566959 -127407181 - MIR SINE MIR -65 197 36 643 325 34 23 chrX 49568277 49568542 -127405598 - L3 LINE CR1 -12 1565 1298 376 300 82 24 chrX 49569830 49570000 -127404140 + MIR SINE MIR 10 189 -73 657 251 20 7 chrX 49570387 49570553 -127403587 - MIR SINE MIR -58 204 38 438 268 161 18 chrX 49570633 49570801 -127403339 - MIR SINE MIR -60 202 11 462 351 24 24 chrX 49571021 49571226 -127402914 - MIR3 SINE MIR -1 207 3 338 287 60 73 chrX 49571485 49571635 -127402505 - MIR3 SINE MIR -39 169 22 377 279 55 73 chrX 49572086 49572305 -127401835 - MIR SINE MIR 0 262 48 368 280 168 8 chrX 49572892 49573017 -127401123 + MIR SINE MIR 2 146 -116 728 217 16 0 chrX 49573876 49574065 -127400075 + L1PB1 LINE L1 6 197 -6666 * 4352 150 23 26 chrX 49574062 49574967 -127399173 + L1PB1 LINE L1 1392 2293 -4570 41025 32 21 1 chrX 49574967 49580999 -127393141 + L1HS LINE L1 1 6155 0 9209 185 71 97 chrX 49581066 49582154 -127391986 + L1PB1 LINE L1 2262 3376 -3491 7549 37 0 0 chrX 49582154 49583748 -127390392 + L1PA5 LINE L1 4558 6151 -3 9209 185 71 97 chrX 49583748 49584822 -127389318 + L1PB1 LINE L1 3376 4476 -2391 3053 40 0 3 chrX 49584822 49585195 -127388945 + L1PA4 LINE L1 5782 6153 -2 9209 185 71 97 chrX 49585195 49587679 -127386461 + L1PB1 LINE L1 4476 6865 -2 389 294 169 6 chrX 49588470 49588630 -127385510 - MIR3 SINE MIR -9 199 14 355 293 19 0 chrX 49588835 49588948 -127385192 - MIR SINE MIR -62 146 50 287 294 29 44 chrX 49589379 49589515 -127384625 + L3b LINE CR1 1249 1382 -201 310 200 0 0 chrX 49589524 49589589 -127384551 + MER116 DNA Mariner 12 76 -4 820 239 31 54 chrX 49589702 49589962 -127384178 + MIR SINE MIR 9 262 0 191 220 0 60 chrX 49590191 49590241 -127383899 - L2 LINE L2 0 3313 3267 619 290 53 5 chrX 49590275 49590495 -127383645 + MIR SINE MIR 3 235 -27 1523 223 63 5 chrX 49591616 49592043 -127382097 + L1ME3A LINE L1 5719 6170 0 874 235 65 12 chrX 49592412 49592659 -127381481 - MIR SINE MIR 0 262 3 240 386 9 0 chrX 49592860 49592974 -127381166 - MIR SINE MIR -1 261 147 533 228 106 26 chrX 49593186 49593375 -127380765 + MIR SINE MIR 53 256 -6 258 268 158 0 chrX 49593786 49593868 -127380272 + MIR SINE MIR 50 144 -64 680 284 76 0 chrX 49594504 49594729 -127379411 + MIR SINE MIR 21 262 0 2371 91 0 7 chrX 49595201 49595510 -127378630 + AluSp SINE Alu 1 307 -6 404 315 24 36 chrX 49595567 49595732 -127378408 + MIR SINE MIR 49 211 -51 285 243 0 66 chrX 49595806 49595942 -127378198 + GA-rich Low_complexity Low_complexity 4 130 0 361 337 88 33 chrX 49596352 49596571 -127377569 + MIR SINE MIR 19 247 -15 431 303 15 15 chrX 49596612 49596744 -127377396 - MIR3 SINE MIR -37 171 40 680 298 0 0 chrX 49597817 49597995 -127376145 - MIR SINE MIR -26 236 59 413 228 60 107 chrX 49598402 49598617 -127375523 + MIR3 SINE MIR 1 205 -3 394 238 195 24 chrX 49599498 49599662 -127374478 - MER58A DNA MER1_type 0 224 33 744 310 62 4 chrX 49599689 49599915 -127374225 + MIR SINE MIR 2 240 -22 416 317 0 16 chrX 49600031 49600154 -127373986 + MIR3 SINE MIR 40 160 -48 746 311 28 12 chrX 49600575 49600826 -127373314 + MIR SINE MIR 2 256 -6 748 200 123 24 chrX 49601213 49601383 -127372757 - MER5A DNA MER1_type -2 187 1 458 288 177 25 chrX 49601759 49601957 -127372183 + MIR SINE MIR 28 255 -7 774 319 16 31 chrX 49602224 49602547 -127371593 + L2 LINE L2 2439 2756 -558 219 69 0 0 chrX 49602626 49602655 -127371485 + (TG)n Simple_repeat Simple_repeat 1 29 0 249 108 0 0 chrX 49602759 49602796 -127371344 + (CA)n Simple_repeat Simple_repeat 1 37 0 870 331 41 61 chrX 49603064 49603595 -127370545 + L2 LINE L2 2751 3272 0 269 297 0 66 chrX 49604099 49604190 -127369950 - L3 LINE CR1 -80 1497 1413 557 303 36 0 chrX 49604591 49604756 -127369384 + MIR3 SINE MIR 38 208 0 1398 227 97 73 chrX 49605101 49605514 -127368626 + MLT1D LTR MaLR 1 429 -76 1435 78 46 27 chrX 49605514 49605733 -127368407 + L1PA11 LINE L1 5949 6171 -3 1398 227 97 73 chrX 49605733 49605812 -127368328 + MLT1D LTR MaLR 429 505 0 278 293 67 86 chrX 49605812 49606030 -127368110 + MIR SINE MIR 36 248 -14 403 288 84 55 chrX 49606106 49606527 -127367613 + L1ME LINE L1 5300 5743 -419 292 257 53 9 chrX 49606629 49606742 -127367398 + L1MC4 LINE L1 7924 8041 -1 5062 187 53 21 chrX 49607200 49608359 -127365781 - L1MA7 LINE L1 -1601 4545 3349 4990 168 17 43 chrX 49608333 49608463 -127365677 + L1MA7 LINE L1 4538 4670 -1621 * 2002 98 0 0 chrX 49608463 49608728 -127365412 - AluY SINE Alu -12 299 35 4990 168 17 43 chrX 49608728 49609858 -127364282 + L1MA7 LINE L1 4670 5740 -551 2055 123 3 22 chrX 49609858 49610174 -127363966 + AluSg SINE Alu 1 310 0 4990 168 17 43 chrX 49610174 49610710 -127363430 + L1MA7 LINE L1 5740 6288 -3 249 416 0 0 chrX 49611004 49611105 -127363035 + L2 LINE L2 2953 3053 -219 307 317 12 18 chrX 49612349 49612516 -127361624 + CT-rich Low_complexity Low_complexity 2 167 0 2251 99 0 0 chrX 49612814 49613106 -127361034 - AluY SINE Alu -19 292 1 506 357 46 10 chrX 49614043 49614239 -127359901 + MIR3 SINE MIR 3 205 -3 989 309 31 13 chrX 49614349 49614738 -127359402 + L1MDa LINE L1 19 414 -6126 472 206 124 9 chrX 49615038 49615256 -127358884 + L1ME3A LINE L1 4341 4583 -1563 798 167 13 123 chrX 49615256 49615483 -127358657 - MLT1A1 LTR MaLR 0 365 164 1684 215 21 31 chrX 49615535 49616014 -127358126 + L1ME3A LINE L1 4849 5322 -824 550 190 6 121 chrX 49616020 49616194 -127357946 + L1ME3A LINE L1 5993 6146 -24 700 178 0 47 chrX 49616693 49616771 -127357369 + L1M3c LINE L1 5 85 -6952 1991 156 14 23 chrX 49616771 49617117 -127357023 - MER61A LTR ERV1 0 343 1 700 178 0 47 chrX 49617117 49617189 -127356951 + L1M3c LINE L1 85 971 -6066 1316 167 9 5 chrX 49617190 49617406 -127356734 - MER61A LTR ERV1 -126 217 1 1307 287 61 46 chrX 49617407 49618150 -127355990 + L1M3e LINE L1 70 1925 -5105 8243 209 37 71 chrX 49618222 49619682 -127354458 + L1MA1 LINE L1 1049 2558 -5007 6070 98 10 14 chrX 49619682 49620691 -127353449 + L1PA14 LINE L1 5148 6152 -9 8243 209 37 71 chrX 49620691 49620703 -127353437 + L1MA1 LINE L1 2558 2569 -4996 1859 166 0 0 chrX 49620703 49620986 -127353154 + AluJb SINE Alu 7 289 -23 8243 209 37 71 chrX 49620986 49620999 -127353141 + L1MA1 LINE L1 2569 2581 -4984 2026 69 0 0 chrX 49620999 49621244 -127352896 + AluSc SINE Alu 65 309 0 8243 209 37 71 chrX 49621244 49623438 -127350702 + L1MA1 LINE L1 2581 4610 -2955 3631 21 0 0 chrX 49623435 49623863 -127350277 - L1HS LINE L1 -865 5281 4854 * 7495 8 0 0 chrX 49623862 49624705 -127349435 + L1HS LINE L1 5313 6155 0 24 53 0 0 chrX 49624816 49624854 -127349286 + AT_rich Low_complexity Low_complexity 1 38 0 10685 162 14 17 chrX 49624873 49625518 -127348622 + L1MA1 LINE L1 4540 5185 -2536 6618 75 9 1 chrX 49625518 49626527 -127347613 + L1PA7 LINE L1 5138 6153 -1 10685 162 14 17 chrX 49626527 49629071 -127345069 + L1MA1 LINE L1 5185 7719 -2 2089 121 7 0 chrX 49629071 49629360 -127344780 - AluSp SINE Alu -22 291 1 23 0 0 0 chrX 49629360 49629383 -127344757 + AT_rich Low_complexity Low_complexity 1 23 0 2566 174 39 18 chrX 49629383 49630177 -127343963 + L1M2 LINE L1 4978 5793 -519 35 0 0 0 chrX 49630186 49630221 -127343919 + AT_rich Low_complexity Low_complexity 1 35 0 1103 157 5 5 chrX 49630258 49630456 -127343684 + L1PB2 LINE L1 3 200 -6663 1218 146 14 32 chrX 49630458 49630677 -127343463 + L1PB2 LINE L1 636 850 -6013 * 7850 208 42 85 chrX 49630674 49631549 -127342591 + L1PB2 LINE L1 2182 3093 -3769 1999 121 0 41 chrX 49631549 49631864 -127342276 - AluSg SINE Alu -6 304 3 7850 208 42 85 chrX 49631864 49634009 -127340131 + L1PB2 LINE L1 3093 5099 -1763 23737 144 16 128 chrX 49634009 49639038 -127335102 + L1PA8 LINE L1 5 5597 -554 1893 155 153 58 chrX 49639038 49639503 -127334637 - LTR22 LTR ERVK 0 509 1 3501 76 0 14 chrX 49639504 49639989 -127334151 + L1PA8 LINE L1 5691 6168 -4 3646 49 0 0 chrX 49639994 49640444 -127333696 + L1PA5 LINE L1 5705 6154 0 23737 144 16 128 chrX 49640444 49641545 -127332595 + L1PA8 LINE L1 4207 5430 -721 299 25 25 0 chrX 49641648 49641688 -127332452 + (CAA)n Simple_repeat Simple_repeat 2 42 0 359 309 12 6 chrX 49641688 49641850 -127332290 - L2 LINE L2 -2234 1080 918 379 276 41 16 chrX 49642099 49642222 -127331918 + MIR SINE MIR 137 262 0 2131 129 0 0 chrX 49642492 49642787 -127331353 - AluSx SINE Alu -17 295 1 1453 233 90 23 chrX 49643158 49643591 -127330549 + MLT1C LTR MaLR 6 467 0 198 327 0 0 chrX 49644391 49644443 -127329697 - L2 LINE L2 -7 3265 3214 5795 145 2 32 chrX 49644872 49646167 -127327973 + L1PB2 LINE L1 5620 6866 -1 31 44 0 0 chrX 49646332 49646377 -127327763 + AT_rich Low_complexity Low_complexity 1 45 0 294 245 132 0 chrX 49646441 49646547 -127327593 - L1ME4a LINE L1 -12 6109 5990 36 0 0 0 chrX 49646572 49646608 -127327532 + AT_rich Low_complexity Low_complexity 1 36 0 417 283 122 51 chrX 49646735 49647046 -127327094 - L1ME4a LINE L1 -375 5746 5414 391 255 72 39 chrX 49647084 49647253 -127326887 - L1ME4a LINE L1 -797 5349 5175 1632 97 30 41 chrX 49647803 49648071 -127326069 + L1PA8A LINE L1 5867 6131 0 353 279 53 18 chrX 49648105 49648243 -127325897 - MIR3 SINE MIR -8 200 56 294 29 0 0 chrX 49648694 49648729 -127325411 + (TG)n Simple_repeat Simple_repeat 2 36 0 1599 182 44 3 chrX 49649040 49649337 -127324803 - AluJo SINE Alu -3 309 1 276 30 0 0 chrX 49649492 49649525 -127324615 + (TG)n Simple_repeat Simple_repeat 2 34 0 447 168 129 0 chrX 49649586 49649687 -127324453 - MER5C DNA MER1_type 0 324 211 556 258 0 0 chrX 49649713 49649837 -127324303 - MER5C DNA MER1_type -200 124 1 232 270 40 81 chrX 49649837 49650004 -127324136 + L2 LINE L2 2911 3070 -202 801 179 17 11 chrX 49650074 49650253 -127323887 - L1MB8 LINE L1 -12 6166 5987 410 313 45 30 chrX 49650958 49651092 -127323048 + L2 LINE L2 3137 3272 0 38621 77 9 9 chrX 49653246 49659392 -127314748 + L1PA6 LINE L1 11 6153 -1 193 98 49 0 chrX 49659688 49659729 -127314411 + T-rich Low_complexity Low_complexity 3 45 0 2150 144 0 0 chrX 49660122 49660434 -127313706 + AluSx SINE Alu 1 312 0 792 226 38 11 chrX 49660696 49660882 -127313258 + Charlie1 DNA MER1_type 1 191 -2570 666 194 43 21 chrX 49660879 49661065 -127313075 + Charlie1 DNA MER1_type 2572 2761 0 * 211 306 0 0 chrX 49662641 49662703 -127311437 - L2 LINE L2 -5 3308 3247 845 129 0 7 chrX 49663632 49663772 -127310368 - L1PA16 LINE L1 -1 6165 6027 304 274 44 0 chrX 49663788 49663901 -127310239 - L1MA9 LINE L1 -2 6310 6193 280 227 0 0 chrX 49663896 49663962 -127310178 - L1 LINE L1 -1604 4542 4477 * 240 303 0 0 chrX 49663990 49664079 -127310061 - L1MC4 LINE L1 -1339 6703 6615 201 182 0 0 chrX 49664080 49664113 -127310027 + (TA)n Simple_repeat Simple_repeat 2 34 0 229 344 0 0 chrX 49664114 49664204 -127309936 - L1MC4 LINE L1 -1339 6703 6614 205 329 0 14 chrX 49664348 49664421 -127309719 + (TATG)n Simple_repeat Simple_repeat 4 75 0 238 258 22 22 chrX 49664427 49664516 -127309624 - L1MC4 LINE L1 -1339 6703 6615 252 286 0 0 chrX 49664517 49664601 -127309539 + (CATATA)n Simple_repeat Simple_repeat 6 89 0 226 263 0 63 chrX 49664615 49664710 -127309430 - L1MC4 LINE L1 -1339 6703 6615 237 211 0 0 chrX 49664713 49664765 -127309375 + (TA)n Simple_repeat Simple_repeat 2 53 0 276 270 0 0 chrX 49664765 49664854 -127309286 - L1MC4 LINE L1 -1339 6703 6615 318 291 0 0 chrX 49664857 49664967 -127309173 + (TA)n Simple_repeat Simple_repeat 2 111 0 232 229 16 0 chrX 49664973 49665034 -127309106 - L1MCa LINE L1 -4359 2067 2006 * 255 242 61 0 chrX 49665002 49665101 -127309039 - L1MC4 LINE L1 -1340 6982 6878 * 11490 109 21 49 chrX 49665094 49667821 -127306319 - L1PA8A LINE L1 -20 6111 3469 2546 162 38 0 chrX 49667813 49668258 -127305882 - L1PA16 LINE L1 -116 6050 5589 * 656 284 9 9 chrX 49668286 49668497 -127305643 + L1PB1 LINE L1 6 216 -6647 * 13849 203 24 9 chrX 49668474 49672196 -127301944 + L1PB1 LINE L1 1392 5057 -1810 2273 115 0 3 chrX 49672196 49672508 -127301632 + AluSq SINE Alu 3 313 0 13849 203 24 9 chrX 49672508 49673767 -127300373 + L1PB1 LINE L1 5057 6489 -378 456 63 13 25 chrX 49673767 49673846 -127300294 + (TA)n Simple_repeat Simple_repeat 2 79 0 13849 203 24 9 chrX 49673846 49673879 -127300261 + L1PB1 LINE L1 6489 6520 -347 207 64 43 21 chrX 49673924 49673971 -127300169 + (TA)n Simple_repeat Simple_repeat 1 48 0 2554 113 0 3 chrX 49673992 49674363 -127299777 + L1PB1 LINE L1 6498 6867 0 669 139 0 0 chrX 49674370 49674471 -127299669 - L1P4 LINE L1 -564 5602 5502 1969 30 0 0 chrX 49676520 49676756 -127297384 - L1PA4 LINE L1 -3 6152 5917 881 289 0 38 chrX 49676889 49677128 -127297012 - MIR SINE MIR -2 260 31 3529 187 102 79 chrX 49677182 49678377 -127295763 - L1MC4 LINE L1 0 8042 6820 21 36 0 0 chrX 49679453 49679481 -127294659 + AT_rich Low_complexity Low_complexity 1 28 0 628 213 30 0 chrX 49680396 49680565 -127293575 - L1MA4 LINE L1 -1 6299 6126 1037 147 6 0 chrX 49680587 49680744 -127293396 - FRAM SINE Alu -4 162 5 1369 207 16 30 chrX 49680776 49681080 -127293060 + AluJb SINE Alu 1 300 -12 180 0 0 0 chrX 49681278 49681298 -127292842 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7337 9 2 6 chrX 49681298 49682142 -127291998 - L1PA2 LINE L1 -12 6143 5303 278 241 23 0 chrX 49682506 49682593 -127291547 + (TA)n Simple_repeat Simple_repeat 1 89 0 2065 132 3 7 chrX 49682621 49682924 -127291216 + AluSx SINE Alu 1 302 -10 2167 200 46 33 chrX 49682929 49683599 -127290541 - L1MB7 LINE L1 -22 6162 5447 1766 163 11 4 chrX 49684549 49684826 -127289314 + AluJo SINE Alu 1 279 -33 528 70 105 0 chrX 49684827 49684941 -127289199 + GA-rich Low_complexity Low_complexity 1 126 0 221 229 42 0 chrX 49685042 49685090 -127289050 + polypurine Low_complexity Low_complexity 3 52 0 843 37 92 12 chrX 49685090 49685253 -127288887 + GA-rich Low_complexity Low_complexity 3 178 0 261 0 0 0 chrX 49688208 49688237 -127285903 + (T)n Simple_repeat Simple_repeat 1 29 0 204 125 0 0 chrX 49688944 49688976 -127285164 + (T)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chrX 49689670 49689699 -127284441 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 226 213 21 0 chrX 49690225 49690272 -127283868 - L3 LINE CR1 -9 1568 1521 374 369 11 32 chrX 49693179 49693366 -127280774 + MIR SINE MIR 35 217 -45 1900 85 11 0 chrX 49693777 49694048 -127280092 + L1MA5A LINE L1 6012 6285 -12 7979 10 0 0 chrX 49694450 49696006 -127278134 - L1PA2 LINE L1 0 6155 4600 226 179 0 0 chrX 49696006 49696045 -127278095 + L1PA2 LINE L1 4562 4600 -1546 592 237 0 7 chrX 49696590 49696798 -127277342 + FLAM_A SINE Alu 8 214 0 545 200 0 0 chrX 49696810 49696900 -127277240 - Tigger3(Golem) DNA MER2_type -1 3028 2939 8810 201 35 18 chrX 49696971 49701136 -127273004 + L1PBa LINE L1 6 4514 -2348 810 99 0 0 chrX 49701136 49701244 -127272896 + L1PB1 LINE L1 6038 6148 -3 22 0 0 0 chrX 49702794 49702816 -127271324 + AT_rich Low_complexity Low_complexity 1 22 0 244 200 20 0 chrX 49703171 49703221 -127270919 - L2 LINE L2 -1 3312 3262 394 225 78 49 chrX 49703448 49703590 -127270550 + L2 LINE L2 3168 3313 0 2235 104 27 0 chrX 49703660 49703958 -127270182 - AluSx SINE Alu -6 306 1 21 0 0 0 chrX 49704428 49704449 -127269691 + AT_rich Low_complexity Low_complexity 1 21 0 850 225 0 30 chrX 49704869 49704913 -127269227 - MER5B DNA MER1_type -2 176 132 2507 97 73 6 chrX 49704913 49705254 -127268886 + THE1B LTR MaLR 1 364 0 850 225 0 30 chrX 49705254 49705378 -127268762 - MER5B DNA MER1_type -46 132 13 207 293 0 0 chrX 49705599 49705657 -127268483 + C-rich Low_complexity Low_complexity 1 58 0 486 0 0 0 chrX 49709218 49709272 -127264868 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 25 0 0 0 chrX 49709905 49709930 -127264210 + AT_rich Low_complexity Low_complexity 1 25 0 189 273 30 30 chrX 49710298 49710364 -127263776 + L3b LINE CR1 1172 1237 -346 1759 116 65 55 chrX 49710492 49710785 -127263355 - AluSx SINE Alu -15 297 2 270 307 79 20 chrX 49710903 49711004 -127263136 + L2 LINE L2 3136 3242 -30 187 329 12 24 chrX 49711033 49711115 -127263025 + L3b LINE CR1 1370 1450 -133 483 250 83 6 chrX 49711209 49711365 -127262775 - L2 LINE L2 0 3313 3146 268 233 164 17 chrX 49712110 49712226 -127261914 + MIR SINE MIR 20 152 -110 253 296 168 24 chrX 49712502 49712627 -127261513 - MIR SINE MIR -3 259 117 866 305 100 27 chrX 49712698 49713252 -127260888 - L1MC4a LINE L1 -75 6046 5448 305 175 113 62 chrX 49713413 49713510 -127260630 - L1ME4a LINE L1 -2 6119 6018 43 71 0 0 chrX 49713541 49713626 -127260514 + AT_rich Low_complexity Low_complexity 1 85 0 1116 182 0 80 chrX 49713782 49714046 -127260094 - L1MB8 LINE L1 0 6178 5936 809 181 31 0 chrX 49714397 49714557 -127259583 + FRAM SINE Alu 9 173 -3 444 305 111 35 chrX 49714790 49715016 -127259124 + MIR SINE MIR 2 244 -18 420 292 6 64 chrX 49715587 49715758 -127258382 + MIR3 SINE MIR 42 202 -6 1115 283 114 43 chrX 49715811 49716695 -127257445 + L2 LINE L2 2128 3089 -224 2216 208 11 57 chrX 49716695 49717224 -127256916 - MLT1D LTR MaLR 0 505 1 1115 283 114 43 chrX 49717224 49717315 -127256825 + L2 LINE L2 3089 3172 -141 399 171 0 133 chrX 49717374 49717479 -127256661 - HAL1 LINE L1 -107 2400 2310 27 0 0 0 chrX 49717579 49717606 -127256534 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chrX 49717668 49717690 -127256450 + AT_rich Low_complexity Low_complexity 1 22 0 260 272 125 37 chrX 49717709 49717845 -127256295 + L2 LINE L2 3158 3305 -8 362 273 0 0 chrX 49717879 49717956 -127256184 + MER63 DNA MER1_type 712 788 -273 208 184 0 19 chrX 49718115 49718192 -127255948 - MIR SINE MIR -70 138 16 186 342 38 56 chrX 49718406 49718672 -127255468 + L2 LINE L2 2831 3091 -181 252 270 9 18 chrX 49718751 49718862 -127255278 + (TATATG)n Simple_repeat Simple_repeat 4 113 0 240 331 11 17 chrX 49718786 49718964 -127255176 + (TATG)n Simple_repeat Simple_repeat 4 180 0 * 263 328 17 17 chrX 49718935 49719115 -127255025 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 342 0 0 0 chrX 49719129 49719167 -127254973 + (TG)n Simple_repeat Simple_repeat 2 39 0 295 324 24 24 chrX 49719597 49719722 -127254418 + MIR SINE MIR 47 172 -76 249 321 112 15 chrX 49720024 49720158 -127253982 + MIR SINE MIR 2 148 -114 363 331 39 8 chrX 49720442 49720569 -127253571 - MIR3 SINE MIR -64 144 14 438 53 0 0 chrX 49720769 49720826 -127253314 + (TG)n Simple_repeat Simple_repeat 1 57 0 1116 305 93 14 chrX 49722752 49723169 -127250971 - L3 LINE CR1 -15 1562 1113 351 121 0 0 chrX 49723746 49723804 -127250336 + (TG)n Simple_repeat Simple_repeat 1 58 0 241 202 20 81 chrX 49723945 49724044 -127250096 + MIR3 SINE MIR 104 196 -12 181 98 49 0 chrX 49724578 49724619 -127249521 + (TATAA)n Simple_repeat Simple_repeat 3 45 0 35 24 0 0 chrX 49724630 49724672 -127249468 + AT_rich Low_complexity Low_complexity 1 42 0 30 27 0 0 chrX 49724701 49724738 -127249402 + AT_rich Low_complexity Low_complexity 1 37 0 563 71 33 60 chrX 49724738 49724921 -127249219 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 637 44 49 77 chrX 49724937 49725120 -127249020 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 782 39 33 66 chrX 49725136 49725317 -127248823 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 779 83 13 63 chrX 49725321 49725639 -127248501 + (TATAA)n Simple_repeat Simple_repeat 1 302 0 219 75 19 38 chrX 49725643 49725696 -127248444 + (TTATA)n Simple_repeat Simple_repeat 2 53 0 347 264 11 11 chrX 49725705 49725796 -127248344 - MIR SINE MIR -108 154 64 333 270 7 44 chrX 49726033 49726170 -127247970 + GA-rich Low_complexity Low_complexity 1 132 0 212 268 0 18 chrX 49726838 49726894 -127247246 - L3 LINE CR1 -152 1425 1371 190 291 18 18 chrX 49726972 49727027 -127247113 - L3 LINE CR1 -214 1363 1309 225 132 0 0 chrX 49727488 49727526 -127246614 + (CCCCCA)n Simple_repeat Simple_repeat 1 38 0 275 348 13 51 chrX 49728075 49728233 -127245907 - MIR3 SINE MIR -3 205 54 556 268 62 5 chrX 49730041 49730262 -127243878 - MIR SINE MIR -13 249 18 196 118 20 20 chrX 49730315 49730366 -127243774 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 424 280 42 37 chrX 49730515 49730704 -127243436 + MARNA DNA Mariner 2 191 -395 217 337 12 12 chrX 49731122 49731208 -127242932 - MIR SINE MIR -72 190 105 209 265 29 0 chrX 49731835 49731903 -127242237 + (TA)n Simple_repeat Simple_repeat 2 71 0 616 322 93 40 chrX 49732034 49732506 -127241634 + L2 LINE L2 1892 2388 -926 367 237 23 92 chrX 49732775 49732906 -127241234 + L2 LINE L2 3189 3310 -3 1810 255 120 37 chrX 49733176 49733819 -127240321 - L1M4 LINE L1 -5846 696 1 427 211 67 0 chrX 49733867 49733957 -127240183 - Charlie4 DNA MER1_type -1849 112 17 225 289 53 26 chrX 49734482 49734558 -127239582 + MIR SINE MIR 41 118 -90 188 154 26 51 chrX 49734945 49734984 -127239156 - L2 LINE L2 -31 3241 3204 335 248 88 18 chrX 49736121 49736234 -127237906 - MIR3 SINE MIR -2 206 86 1253 209 17 42 chrX 49736234 49736521 -127237619 - MLT1D LTR MaLR 0 505 226 541 204 0 0 chrX 49736518 49736606 -127237534 - MLT1D LTR MaLR -417 88 1 * 196 267 0 0 chrX 49736606 49736651 -127237489 - MIR SINE MIR -118 90 46 229 314 69 39 chrX 49738406 49738508 -127235632 + L2 LINE L2 2713 2817 -497 278 298 158 0 chrX 49738612 49738726 -127235414 - L2 LINE L2 -5 3267 3136 261 0 0 0 chrX 49741064 49741093 -127233047 + (TG)n Simple_repeat Simple_repeat 1 29 0 296 298 145 8 chrX 49741747 49741878 -127232262 - MIR3 SINE MIR -32 176 28 612 227 13 7 chrX 49742177 49742331 -127231809 - MER103 DNA DNA -3 163 9 266 336 103 0 chrX 49742513 49742629 -127231511 - L2 LINE L2 -2 3270 3143 844 337 12 4 chrX 49743829 49744078 -127230062 + MIR SINE MIR 8 258 -4 314 318 16 16 chrX 49744187 49744316 -127229824 - MIR3 SINE MIR -4 204 76 293 304 61 49 chrX 49744970 49745116 -127229024 + MIR SINE MIR 37 182 -63 424 213 219 43 chrX 49745965 49746129 -127228011 + MIR3 SINE MIR 15 207 -1 428 307 0 47 chrX 49746355 49746482 -127227658 - MIR SINE MIR -58 150 30 325 302 134 17 chrX 49747129 49747308 -127226832 - MIR3 SINE MIR -8 200 1 1073 211 17 0 chrX 49747361 49747536 -127226604 - MER45A DNA AcHobo 0 178 1 504 244 144 27 chrX 49747607 49747831 -127226309 - MIR SINE MIR -11 251 5 337 298 258 0 chrX 49748225 49748376 -127225764 + MIR3 SINE MIR 11 200 -8 340 259 29 72 chrX 49749158 49749297 -127224843 + MIR3 SINE MIR 15 147 -61 194 309 135 56 chrX 49749517 49749695 -127224445 + L2 LINE L2 3027 3218 -54 1087 187 150 7 chrX 49750285 49750571 -127223569 - MER33 DNA MER1_type -8 316 1 197 279 0 0 chrX 49750572 49750615 -127223525 - L2 LINE L2 -93 3179 3137 585 222 24 16 chrX 49750670 49750796 -127223344 + MIR SINE MIR 19 145 -63 704 341 83 15 chrX 49750805 49751326 -127222814 - L2 LINE L2 0 3313 2748 314 340 100 7 chrX 49751438 49751588 -127222552 - L2 LINE L2 -226 3046 2883 640 180 14 29 chrX 49751749 49751888 -127222252 - MIR SINE MIR 0 262 126 626 140 4 0 chrX 49752340 49752448 -127221692 - LTR23 LTR ERV1 -10 435 320 21 0 0 0 chrX 49752521 49752542 -127221598 + AT_rich Low_complexity Low_complexity 1 21 0 1006 128 27 0 chrX 49752579 49752728 -127221412 + FAM SINE Alu 17 169 -16 2340 159 64 9 chrX 49752728 49753182 -127220958 + L1MA7 LINE L1 5813 6291 0 567 272 89 6 chrX 49753720 49753900 -127220240 - MIR SINE MIR -11 251 57 250 245 0 0 chrX 49754054 49754103 -127220037 + L2 LINE L2 3181 3229 -84 459 219 80 20 chrX 49754249 49754400 -127219740 + L2 LINE L2 3149 3308 -5 324 271 36 84 chrX 49754545 49754639 -127219501 + MIR3 SINE MIR 35 119 -89 2701 121 51 14 chrX 49754639 49755052 -127219088 - MSTA LTR MaLR 0 428 1 324 271 36 84 chrX 49755052 49755123 -127219017 + MIR3 SINE MIR 119 192 -16 233 268 0 0 chrX 49755165 49755221 -127218919 - L2 LINE L2 -78 3235 3180 214 190 38 63 chrX 49755412 49755570 -127218570 + (TTATA)n Simple_repeat Simple_repeat 1 154 0 524 42 14 0 chrX 49755575 49755646 -127218494 + (TA)n Simple_repeat Simple_repeat 1 72 0 457 348 86 0 chrX 49756217 49756404 -127217736 - MIR SINE MIR -9 253 51 210 333 12 0 chrX 49756578 49756662 -127217478 - L3b LINE CR1 -187 1396 1312 207 317 134 0 chrX 49757313 49757395 -127216745 + L2 LINE L2 3172 3264 -8 202 388 0 0 chrX 49758072 49758170 -127215970 + L2 LINE L2 2685 2782 -532 385 359 70 36 chrX 49758278 49758607 -127215533 + L2 LINE L2 2925 3264 -8 2242 110 3 0 chrX 49758868 49759169 -127214971 - AluSg SINE Alu -8 302 1 4232 178 52 42 chrX 49759473 49760298 -127213842 - MER21A LTR ERV1 0 931 99 207 0 0 0 chrX 49760319 49760342 -127213798 + (CA)n Simple_repeat Simple_repeat 2 24 0 252 73 0 49 chrX 49760349 49760390 -127213750 - MER39 LTR ERV1 -592 115 77 315 0 0 0 chrX 49760413 49760448 -127213692 + (CA)n Simple_repeat Simple_repeat 2 36 0 320 315 4 90 chrX 49760505 49760642 -127213498 + MIR SINE MIR 20 147 -61 205 242 22 11 chrX 49761744 49761835 -127212305 + T-rich Low_complexity Low_complexity 4 95 0 197 192 0 19 chrX 49761967 49762019 -127212121 + GA-rich Low_complexity Low_complexity 2 52 0 288 0 0 0 chrX 49762031 49762063 -127212077 + (CAG)n Simple_repeat Simple_repeat 1 32 0 218 364 10 50 chrX 49762504 49762603 -127211537 + MIR3 SINE MIR 73 167 -41 200 415 0 0 chrX 49762602 49762684 -127211456 - MIR3 SINE MIR -21 187 106 * 1756 163 7 4 chrX 49762761 49763038 -127211102 + AluJb SINE Alu 23 300 -12 450 264 101 111 chrX 49763192 49763598 -127210542 + L2 LINE L2 2909 3310 -3 1245 194 5 0 chrX 49764570 49764787 -127209353 + AluJb SINE Alu 85 302 -10 205 217 133 17 chrX 49764860 49764920 -127209220 - L2 LINE L2 -1 3271 3205 229 326 65 91 chrX 49765047 49765277 -127208863 - L2 LINE L2 -213 3059 2836 2146 159 5 49 chrX 49765958 49766349 -127207791 + MLT1B LTR MaLR 17 390 0 279 352 85 13 chrX 49766680 49766863 -127207277 + MIR SINE MIR 16 208 -54 312 27 0 0 chrX 49767840 49767877 -127206263 + (CA)n Simple_repeat Simple_repeat 2 38 0 853 293 28 4 chrX 49767879 49768132 -127206008 + L3 LINE CR1 863 1121 -456 208 331 8 0 chrX 49768807 49768928 -127205212 + (TTG)n Simple_repeat Simple_repeat 1 122 0 357 269 71 76 chrX 49769359 49769556 -127204584 + L2 LINE L2 3115 3310 -3 697 274 83 10 chrX 49769687 49769980 -127204160 + L1MC4a LINE L1 5296 5612 -509 444 189 53 89 chrX 49769984 49770153 -127203987 + L1MC5 LINE L1 7751 7913 -48 640 287 113 7 chrX 49770254 49770564 -127203576 + L1MC4a LINE L1 5580 5922 -1886 395 213 44 134 chrX 49770847 49771167 -127202973 + L1ME4a LINE L1 5831 6121 0 872 266 46 35 chrX 49771812 49772158 -127201982 - L1ME4a LINE L1 -11 6110 5761 207 0 0 0 chrX 49772326 49772349 -127201791 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 212 263 0 0 chrX 49772683 49772721 -127201419 + L2 LINE L2 3254 3291 -22 704 202 56 39 chrX 49773303 49773481 -127200659 + MIR SINE MIR 26 206 -56 228 135 0 0 chrX 49773484 49773521 -127200619 + (TA)n Simple_repeat Simple_repeat 1 37 0 2161 151 0 0 chrX 49773758 49774070 -127200070 + AluSx SINE Alu 1 312 0 237 282 118 9 chrX 49774279 49774389 -127199751 + MIR SINE MIR 25 146 -62 210 313 0 15 chrX 49775442 49775509 -127198631 + GA-rich Low_complexity Low_complexity 1 66 0 288 200 30 65 chrX 49775552 49775664 -127198476 + MIR SINE MIR 50 150 -69 211 294 98 54 chrX 49777118 49777210 -127196930 + L2 LINE L2 3133 3228 -44 197 309 0 0 chrX 49777235 49777277 -127196863 - L3 LINE CR1 -10 1567 1526 * 247 263 118 0 chrX 49777244 49777320 -127196820 - MIR3 SINE MIR -22 186 102 6655 94 17 1 chrX 49777371 49777696 -127196444 - L1PA10 LINE L1 -14 6154 5836 315 0 0 0 chrX 49777696 49777731 -127196409 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 6655 94 17 1 chrX 49777731 49779140 -127195000 - L1PA10 LINE L1 -332 5836 4388 316 264 55 0 chrX 49779328 49779419 -127194721 - MIR SINE MIR -63 145 50 299 352 83 7 chrX 49780157 49780302 -127193838 - MIR3 SINE MIR -33 175 20 300 27 0 0 chrX 49780500 49780537 -127193603 + (CA)n Simple_repeat Simple_repeat 2 38 0 382 239 23 0 chrX 49780865 49780953 -127193187 + MIR SINE MIR 84 173 -89 236 271 12 24 chrX 49781376 49781461 -127192679 + L2 LINE L2 3230 3313 0 180 391 0 0 chrX 49781664 49781728 -127192412 - L2 LINE L2 -691 2623 2560 194 336 142 18 chrX 49782308 49782421 -127191719 - L2 LINE L2 -4 3268 3142 939 222 51 21 chrX 49782425 49782659 -127191481 - MLT1G LTR MaLR -8 582 342 270 0 0 0 chrX 49783021 49783051 -127191089 + (TG)n Simple_repeat Simple_repeat 1 30 0 6732 84 10 11 chrX 49783425 49785249 -127188891 + L1PA13 LINE L1 4314 6144 -19 640 115 21 0 chrX 49785249 49785345 -127188795 + Tigger1 DNA MER2_type 2141 2238 -180 1045 217 26 90 chrX 49785425 49785784 -127188356 - L1ME2 LINE L1 0 6170 5837 1388 209 40 7 chrX 49785786 49786063 -127188077 - MLT1E LTR MaLR -2 591 306 571 24 0 36 chrX 49786169 49786252 -127187888 + (TCTCCC)n Simple_repeat Simple_repeat 5 84 0 9924 75 11 12 chrX 49786252 49787581 -127186559 + SVA Other Other 57 1383 -3 23 33 0 0 chrX 49787581 49787611 -127186529 + AT_rich Low_complexity Low_complexity 1 30 0 530 260 55 28 chrX 49787617 49787798 -127186342 - MIR SINE MIR -49 213 28 264 228 0 0 chrX 49787810 49787867 -127186273 + MER113 DNA MER1_type? 1 57 -464 350 189 0 54 chrX 49787964 49788038 -127186102 + MER113 DNA MER1_type? 452 521 0 416 279 45 19 chrX 49788054 49788208 -127185932 + MIR3 SINE MIR 38 195 -13 240 312 129 0 chrX 49789179 49789272 -127184868 - MIR SINE MIR -157 105 1 203 298 18 0 chrX 49789345 49789402 -127184738 + L2 LINE L2 3010 3067 -246 528 285 42 26 chrX 49789459 49789652 -127184488 - MIR3 SINE MIR -3 205 10 206 223 0 128 chrX 49789834 49789928 -127184212 - MIR SINE MIR -107 101 20 205 200 50 0 chrX 49789928 49789988 -127184152 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 471 302 66 16 chrX 49791339 49791521 -127182619 + L3 LINE CR1 1296 1486 -91 187 238 24 0 chrX 49792039 49792081 -127182059 - L2 LINE L2 -10 3303 3261 198 0 0 0 chrX 49792220 49792242 -127181898 + (CA)n Simple_repeat Simple_repeat 2 23 0 636 297 55 41 chrX 49792244 49792611 -127181529 - L1MC4 LINE L1 -143 7899 7528 686 332 40 7 chrX 49792620 49792941 -127181199 + L2 LINE L2 2697 3037 -276 432 273 16 50 chrX 49792941 49793118 -127181022 + MLT1H1 LTR MaLR 3 173 -382 194 195 0 0 chrX 49793128 49793169 -127180971 + MIR SINE MIR 214 254 -8 428 217 21 153 chrX 49793176 49793411 -127180729 + MLT1H1 LTR MaLR 173 376 -214 613 209 25 43 chrX 49793419 49793574 -127180566 + L2 LINE L2 3110 3261 -52 543 240 169 0 chrX 49793574 49793728 -127180412 - MER5A DNA MER1_type 0 189 10 498 181 11 11 chrX 49793811 49793905 -127180235 + Charlie8 DNA MER1_type 132 225 -2192 356 267 0 0 chrX 49794177 49794252 -127179888 - MER5A DNA MER1_type -111 78 4 249 204 74 0 chrX 49794257 49794311 -127179829 + L2 LINE L2 3256 3313 0 * 448 311 66 13 chrX 49794309 49794460 -127179680 - MIR SINE MIR -73 189 31 19757 49 2 0 chrX 49794609 49797870 -127176270 - L1PA5 LINE L1 -3 6151 2887 1988 159 3 0 chrX 49797993 49798288 -127175852 + AluSx SINE Alu 1 296 -16 2592 104 3 3 chrX 49798335 49798699 -127175441 + THE1B LTR MaLR 1 364 0 435 286 43 38 chrX 49799256 49799441 -127174699 + MER5A DNA MER1_type 3 188 -1 196 371 0 0 chrX 49800031 49800101 -127174039 - L2 LINE L2 -9 3263 3194 390 169 0 0 chrX 49800132 49800209 -127173931 + L1 LINE L1 4780 4856 -1290 2269 128 12 2 chrX 49800215 49800618 -127173522 + L1P4 LINE L1 5221 5627 -541 602 277 23 17 chrX 49800907 49801084 -127173056 + MER5B DNA MER1_type 1 178 0 706 220 26 21 chrX 49801129 49801320 -127172820 - MER106A DNA MER1_type -44 192 1 334 200 15 0 chrX 49801337 49801402 -127172738 + MER5A DNA MER1_type 44 109 -80 1502 338 62 12 chrX 49801527 49802250 -127171890 - L3 LINE CR1 -1 1576 818 1758 142 7 14 chrX 49802269 49802550 -127171590 - AluJo SINE Alu -21 291 13 817 249 96 25 chrX 49802656 49803105 -127171035 + L1ME4a LINE L1 5484 5964 -157 250 218 0 23 chrX 49803125 49803212 -127170928 + L1MC4 LINE L1 6614 6698 -1344 2103 127 27 14 chrX 49803291 49803660 -127170480 - L1MA3 LINE L1 0 6305 5932 1271 178 0 5 chrX 49804135 49804371 -127169769 - AluJo SINE Alu 0 318 84 380 353 42 12 chrX 49804389 49804556 -127169584 - MIR SINE MIR -59 203 32 299 113 0 38 chrX 49804838 49804891 -127169249 + L1ME LINE L1 5623 5673 -448 180 77 0 0 chrX 49806663 49806689 -127167451 + (A)n Simple_repeat Simple_repeat 1 26 0 9369 183 7 17 chrX 49806772 49807101 -127167039 + L1PB1 LINE L1 2968 3299 -2852 2207 128 0 0 chrX 49807101 49807405 -127166735 + AluSg SINE Alu 1 304 -6 9369 183 7 17 chrX 49807405 49807621 -127166519 + L1PB1 LINE L1 3299 3516 -2635 2215 84 0 7 chrX 49807621 49807947 -127166193 + AluY SINE Alu 1 324 0 9369 183 7 17 chrX 49807947 49809007 -127165133 + L1PB1 LINE L1 3516 4585 -1566 2030 135 29 22 chrX 49809007 49809318 -127164822 + AluSq SINE Alu 1 313 0 9369 183 7 17 chrX 49809318 49810927 -127163213 + L1PB1 LINE L1 4585 6149 -2 2872 275 124 34 chrX 49811023 49811866 -127162274 + L1MB5 LINE L1 1 994 -5865 2004 98 11 0 chrX 49811866 49812131 -127162009 + AluSg1 SINE Alu 25 292 -17 2872 275 124 34 chrX 49812131 49812536 -127161604 + L1MB5 LINE L1 994 1361 -5498 800 142 89 18 chrX 49812541 49812710 -127161430 + MER30B DNA MER1_type 6 186 -4 180 0 0 0 chrX 49812785 49812805 -127161335 + (TAAAAA)n Simple_repeat Simple_repeat 1 20 0 1671 295 58 22 chrX 49812816 49813036 -127161104 + L1MB5 LINE L1 1376 1587 -5551 2114 196 35 7 chrX 49813036 49813500 -127160640 + L1PB4 LINE L1 5678 6154 -2 1671 295 58 22 chrX 49813500 49814280 -127159860 + L1MB5 LINE L1 1587 2564 -4574 307 290 101 43 chrX 49814457 49814664 -127159476 + L1MB5 LINE L1 2592 2810 -4328 25 0 0 0 chrX 49814692 49814717 -127159423 + AT_rich Low_complexity Low_complexity 1 25 0 1739 236 5 5 chrX 49814975 49815344 -127158796 + L1PA15 LINE L1 1 369 -6418 7617 214 15 25 chrX 49815348 49817765 -127156375 + L1PA15 LINE L1 2309 4805 -2011 2439 110 8 31 chrX 49817765 49818148 -127155992 + THE1C LTR MaLR 2 375 0 7617 214 15 25 chrX 49818148 49820140 -127154000 + L1PA15 LINE L1 4805 6816 0 2469 224 49 133 chrX 49820141 49820675 -127153465 + L1MB5 LINE L1 2877 3454 -3503 1960 145 7 3 chrX 49820675 49820964 -127153176 - AluSx SINE Alu -18 294 5 2469 224 49 133 chrX 49820964 49821399 -127152741 + L1MB5 LINE L1 3454 3924 -3033 824 222 52 0 chrX 49821399 49821593 -127152547 + MLT1B LTR MaLR 187 390 0 2469 224 49 133 chrX 49821593 49822155 -127151985 + L1MB5 LINE L1 3924 4386 -2571 1932 130 3 77 chrX 49822155 49822479 -127151661 + AluSx SINE Alu 1 300 -12 2469 224 49 133 chrX 49822479 49822681 -127151459 + L1MB5 LINE L1 4386 4603 -2354 * 22941 46 1 0 chrX 49822678 49825678 -127148462 - L1PA3 LINE L1 -2327 3819 819 13007 34 0 0 chrX 49825678 49828010 -127146130 + L1PA3 LINE L1 3821 6152 -3 4927 177 58 4 chrX 49828063 49829207 -127144933 + Tigger3b DNA MER2_type 1 1231 0 241 251 145 63 chrX 49829238 49829445 -127144695 + LTR10A LTR ERV1 12 235 -374 1570 148 59 73 chrX 49829447 49829819 -127144321 + LTR10A LTR ERV1 181 547 -62 617 248 84 95 chrX 49829829 49830555 -127143585 + LTR10A-int LTR ERV1 1 718 -5931 7207 102 56 43 chrX 49830744 49832924 -127141216 + LTR10A-int LTR ERV1 718 2972 -3924 5215 252 15 24 chrX 49833002 49834505 -127139635 + LTR10A-int LTR ERV1 5156 6645 -4 1665 157 194 50 chrX 49834508 49834987 -127139153 + LTR10A LTR ERV1 1 548 -61 286 185 48 82 chrX 49835030 49835176 -127138964 + L1MB5 LINE L1 4694 4834 -2123 292 114 0 0 chrX 49835189 49835233 -127138907 + Alu SINE Alu 246 289 -13 11321 234 28 23 chrX 49835245 49835619 -127138521 + L1PA11 LINE L1 7 378 -7206 4289 105 28 31 chrX 49835619 49836265 -127137875 + LTR9B LTR ERV1 1 644 0 11321 234 28 23 chrX 49836265 49840641 -127133499 + L1PA11 LINE L1 378 5299 -2285 14285 190 31 12 chrX 49840643 49842497 -127131643 + L1PB1 LINE L1 1 1818 -5062 2327 93 0 3 chrX 49842497 49842798 -127131342 - AluY SINE Alu -11 300 1 14285 190 31 12 chrX 49842798 49844511 -127129629 + L1PB1 LINE L1 1818 3496 -3384 243 0 0 0 chrX 49844511 49844538 -127129602 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 14285 190 31 12 chrX 49844538 49847642 -127126498 + L1PB1 LINE L1 3496 6880 0 9006 161 19 19 chrX 49847648 49849952 -127124188 + L1PA11 LINE L1 5297 7610 -2 3968 217 71 35 chrX 49849952 49851085 -127123055 + L1MB5 LINE L1 4829 6001 -956 806 265 0 0 chrX 49851085 49851251 -127122889 + FRAM SINE Alu 1 159 -17 4302 193 20 33 chrX 49851253 49851378 -127122762 + L1MB5 LINE L1 6007 6132 -853 1525 189 20 20 chrX 49851378 49851675 -127122465 + AluSx SINE Alu 1 297 -15 4302 193 20 33 chrX 49851675 49852454 -127121686 + L1MB5 LINE L1 6132 6896 -89 1816 171 4 0 chrX 49852454 49852758 -127121382 - AluJb SINE Alu 0 305 1 4302 193 20 33 chrX 49852758 49852847 -127121293 + L1MB5 LINE L1 6896 6985 0 327 146 0 0 chrX 49853046 49853101 -127121039 + (TA)n Simple_repeat Simple_repeat 2 56 0 471 18 0 0 chrX 49853101 49853157 -127120983 + (GA)n Simple_repeat Simple_repeat 2 57 0 338 218 48 68 chrX 49853158 49853305 -127120835 + L1M4c LINE L1 1698 1841 -4543 510 255 10 49 chrX 49853381 49853585 -127120555 + L1M4c LINE L1 2025 2220 -4164 * 1147 140 70 48 chrX 49853579 49853665 -127120475 + L1M4 LINE L1 5530 5613 -571 2420 57 7 3 chrX 49853665 49853963 -127120177 + AluY SINE Alu 1 299 -12 1147 140 70 48 chrX 49853963 49854104 -127120036 + L1M4 LINE L1 5613 5762 -422 412 317 67 43 chrX 49854822 49855213 -127118927 - L1ME4a LINE L1 -239 5882 5483 945 158 0 0 chrX 49855346 49855485 -127118655 + FRAM SINE Alu 20 158 -18 485 262 8 0 chrX 49855547 49855669 -127118471 + MIR SINE MIR 140 262 0 2013 110 43 0 chrX 49855686 49855968 -127118172 - AluSq SINE Alu -19 294 1 1710 188 7 7 chrX 49856760 49857068 -127117072 - AluJo SINE Alu -4 308 1 252 227 200 0 chrX 49857906 49857981 -127116159 - MIR SINE MIR -121 141 52 344 280 40 0 chrX 49858558 49858658 -127115482 + MIR SINE MIR 34 137 -71 2190 104 0 10 chrX 49858965 49859262 -127114878 - AluSg SINE Alu -16 294 1 207 211 0 0 chrX 49859985 49860023 -127114117 - MIR SINE MIR -90 118 81 236 318 159 28 chrX 49860032 49860139 -127114001 - L2 LINE L2 -9 3263 3143 904 364 78 9 chrX 49860614 49861226 -127112914 + L2 LINE L2 2374 3029 -243 899 147 6 0 chrX 49861279 49861436 -127112704 - THE1C-int LTR MaLR -1491 160 3 1783 166 67 33 chrX 49861437 49861798 -127112342 - THE1C LTR MaLR 0 375 3 2776 151 5 45 chrX 49861801 49862009 -127112131 + L1 LINE L1 4121 4336 -1810 896 131 0 51 chrX 49862009 49862146 -127111994 - FLAM_C SINE Alu -3 130 1 2776 151 5 45 chrX 49862146 49862214 -127111926 + L1 LINE L1 4336 4405 -1741 2019 133 0 0 chrX 49862214 49862534 -127111606 + AluSc SINE Alu 1 320 0 2776 151 5 45 chrX 49862534 49862808 -127111332 + L1 LINE L1 4405 4653 -1493 2570 108 25 0 chrX 49862803 49863165 -127110975 + THE1A-int LTR MaLR 1210 1580 0 * 2630 106 17 0 chrX 49863165 49863514 -127110626 + THE1A LTR MaLR 1 355 0 1768 255 27 8 chrX 49863514 49864035 -127110105 - HERVL-B3 LTR ERVL -5123 531 1 3342 165 7 55 chrX 49864035 49864616 -127109524 - MLT2B3 LTR ERVL 0 554 2 1604 179 69 0 chrX 49864664 49864954 -127109186 + AluJb SINE Alu 1 310 -2 21 0 0 0 chrX 49864979 49865000 -127109140 + AT_rich Low_complexity Low_complexity 1 21 0 1447 289 85 16 chrX 49865097 49865929 -127108211 + L1M4 LINE L1 2237 3126 -3020 352 345 101 4 chrX 49865940 49866178 -127107962 - L1ME LINE L1 -563 5601 5341 2116 107 17 7 chrX 49866298 49866614 -127107526 - AluSx SINE Alu 0 312 1 258 404 54 0 chrX 49866636 49866802 -127107338 - L3 LINE CR1 -348 1229 1055 605 321 56 16 chrX 49867032 49867284 -127106856 + MIR SINE MIR 1 262 0 264 286 39 13 chrX 49867349 49867426 -127106714 + MIR SINE MIR 17 95 -167 21342 131 13 17 chrX 49867470 49870879 -127103261 + L1PA6 LINE L1 11 3404 -2742 335 71 0 0 chrX 49870867 49870909 -127103231 - L1PA3 LINE L1 -588 5567 5526 * 5153 35 5 0 chrX 49870909 49871462 -127102678 + L1PA3 LINE L1 5564 6132 -19 221 56 0 28 chrX 49871462 49871498 -127102642 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 15969 71 8 0 chrX 49871498 49874271 -127099869 + L1PA6 LINE L1 3379 6154 0 428 284 40 54 chrX 49875036 49875184 -127098956 + MIR3 SINE MIR 58 203 -5 361 262 43 92 chrX 49875785 49875926 -127098214 - MIR3 SINE MIR -67 141 8 1972 47 0 4 chrX 49876269 49876503 -127097637 + AluY SINE Alu 70 302 -9 374 286 0 0 chrX 49876858 49876963 -127097177 - MIR SINE MIR 0 262 158 238 231 0 31 chrX 49876963 49877028 -127097112 + HsTC2 DNA Tc2 7 69 -1829 2034 197 8 6 chrX 49877064 49877425 -127096715 - MLT1A1 LTR MaLR -3 362 1 320 255 35 138 chrX 49877463 49877608 -127096532 + L2 LINE L2 3143 3272 0 371 293 19 9 chrX 49878157 49878263 -127095877 - MER5B DNA MER1_type -70 108 2 198 128 0 0 chrX 49878290 49878329 -127095811 + (TC)n Simple_repeat Simple_repeat 2 40 0 765 170 0 0 chrX 49878338 49878450 -127095690 - FLAM_C SINE Alu -30 113 2 244 293 0 13 chrX 49878637 49878712 -127095428 + GA-rich Low_complexity Low_complexity 1 74 0 206 281 0 35 chrX 49878793 49878850 -127095290 - MIR SINE MIR -77 131 77 535 326 37 18 chrX 49879228 49879446 -127094694 + MIR SINE MIR 2 223 -39 184 355 21 32 chrX 49879468 49879561 -127094579 - L2 LINE L2 -94 3178 3087 969 278 0 16 chrX 49879585 49879840 -127094300 + L2 LINE L2 2543 2793 -521 628 242 121 0 chrX 49879833 49879990 -127094150 + MIR SINE MIR 11 186 -76 * 369 331 64 61 chrX 49880062 49880455 -127093685 + L2 LINE L2 2844 3237 -76 212 200 0 0 chrX 49880452 49880502 -127093638 - L2 LINE L2 -167 3146 3097 * 338 329 21 7 chrX 49880832 49880975 -127093165 + MIR3 SINE MIR 61 205 -3 217 218 0 126 chrX 49882266 49882353 -127091787 - MIR SINE MIR -70 192 117 279 264 0 0 chrX 49882446 49882518 -127091622 - MIR SINE MIR 0 262 191 2490 81 0 7 chrX 49882773 49883083 -127091057 + AluSc SINE Alu 2 309 0 224 321 68 68 chrX 49883487 49883739 -127090401 + L2 LINE L2 2373 2624 -690 256 305 42 11 chrX 49884035 49884130 -127090010 - L2 LINE L2 -223 3049 2952 5121 11 0 0 chrX 49884529 49885068 -127089072 - L1PA3 LINE L1 0 6155 5617 9674 26 5 0 chrX 49885068 49886433 -127087707 + L1PA3 LINE L1 4259 5627 -528 3820 145 47 34 chrX 49886537 49887239 -127086901 + MER50 LTR ERV1 1 711 -23 317 289 47 23 chrX 49888977 49889105 -127085035 + MIR SINE MIR 113 243 -19 208 135 0 0 chrX 49889266 49889303 -127084837 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1213 122 16 0 chrX 49889780 49889969 -127084171 + L1PA11 LINE L1 4 195 -6668 2345 143 55 30 chrX 49890005 49890444 -127083696 + L1PA11 LINE L1 710 1159 -5704 1497 124 15 13 chrX 49890438 49890703 -127083437 + L1PA11 LINE L1 4128 5800 -1062 * 696 46 0 0 chrX 49890703 49890790 -127083350 + L1PA4 LINE L1 6066 6152 -3 6669 92 15 31 chrX 49890799 49891880 -127082260 + L1PA11 LINE L1 5822 6890 0 464 287 0 73 chrX 49891886 49892147 -127081993 - L1P LINE L1 -1053 5093 4852 364 248 83 41 chrX 49892153 49892298 -127081842 + L2 LINE L2 3158 3308 -5 252 299 0 0 chrX 49892511 49892578 -127081562 - MIR SINE MIR -13 249 183 5381 174 28 12 chrX 49893052 49894761 -127079379 - L1MB3 LINE L1 0 6183 4453 2127 122 0 44 chrX 49894761 49895082 -127079058 - AluSx SINE Alu -5 307 1 5381 174 28 12 chrX 49895082 49895152 -127078988 - L1MB3 LINE L1 -1730 4453 4386 292 306 20 10 chrX 49895281 49895379 -127078761 + MIR SINE MIR 52 150 -58 180 314 0 0 chrX 49895554 49895605 -127078535 + L3 LINE CR1 1525 1575 -2 415 291 16 48 chrX 49896138 49896327 -127077813 - L1ME3A LINE L1 -26 6144 5962 390 340 70 37 chrX 49896410 49896654 -127077486 + MIR SINE MIR 11 262 0 877 222 0 0 chrX 49897929 49898091 -127076049 + FRAM SINE Alu 1 161 -15 292 268 0 14 chrX 49898101 49898172 -127075968 + MIR SINE MIR 33 102 -160 313 341 120 18 chrX 49898315 49898628 -127075512 - L2 LINE L2 -220 3052 2695 249 325 13 40 chrX 49900172 49900323 -127073817 + (CA)n Simple_repeat Simple_repeat 1 147 0 354 293 158 23 chrX 49900954 49901169 -127072971 - L3b LINE CR1 -136 1447 1204 310 354 95 49 chrX 49902365 49902775 -127071365 - L2 LINE L2 -16 3256 2828 210 213 64 0 chrX 49902841 49902888 -127071252 - L2 LINE L2 -556 2758 2709 2361 171 49 74 chrX 49904039 49904553 -127069587 + MLT1D LTR MaLR 5 505 0 13227 89 6 11 chrX 49905494 49911591 -127062549 + L1PA6 LINE L1 11 6154 0 337 262 84 0 chrX 49911592 49911699 -127062441 + MER103 DNA DNA 42 157 -9 182 244 22 0 chrX 49911803 49911848 -127062292 + L3 LINE CR1 1278 1323 -254 202 343 0 0 chrX 49911975 49912045 -127062095 - L3b LINE CR1 -346 1237 1168 201 175 19 68 chrX 49912377 49912480 -127061660 + T-rich Low_complexity Low_complexity 1 98 0 2653 68 31 0 chrX 49912488 49912810 -127061330 - L1PA7 LINE L1 -6 6148 5817 * 7568 61 0 9 chrX 49912809 49913756 -127060384 + L1PA5 LINE L1 5215 6153 -1 12013 205 31 10 chrX 49914702 49917510 -127056630 - L1PA13 LINE L1 -3915 2882 3 199 311 66 0 chrX 49917896 49917957 -127056183 + MIR SINE MIR 91 155 -107 889 235 22 0 chrX 49917959 49918142 -127055998 - MER5A DNA MER1_type 0 189 3 185 291 51 13 chrX 49919058 49919137 -127055003 + L3 LINE CR1 1494 1575 -2 21 0 0 0 chrX 49919139 49919160 -127054980 + AT_rich Low_complexity Low_complexity 1 21 0 2261 261 101 58 chrX 49919356 49920334 -127053806 + L2 LINE L2 1786 2805 -509 301 68 0 34 chrX 49920346 49920405 -127053735 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 1338 57 0 0 chrX 49920412 49920570 -127053570 - AluY SINE Alu -24 287 130 623 305 88 63 chrX 49920592 49921035 -127053105 + L2 LINE L2 2859 3312 -1 22 35 0 0 chrX 49921393 49921422 -127052718 + AT_rich Low_complexity Low_complexity 1 29 0 4774 19 0 0 chrX 49923060 49923577 -127050563 + L1PA2 LINE L1 5639 6155 0 8108 29 1 0 chrX 49923586 49924563 -127049577 + L1PA3 LINE L1 5175 6152 -3 4075 136 43 0 chrX 49924563 49925174 -127048966 + THE1-int LTR MaLR 428 1064 -516 2362 139 19 27 chrX 49925192 49925559 -127048581 - THE1B LTR MaLR 0 364 1 294 299 44 88 chrX 49925740 49925877 -127048263 + L2 LINE L2 3137 3267 -5 2081 151 101 89 chrX 49926115 49926619 -127047521 - MLT2B1 LTR ERVL 0 520 11 34169 36 1 1 chrX 49926722 49931598 -127042542 + L1PA3 LINE L1 1283 6155 0 440 171 0 26 chrX 49932365 49932441 -127041699 - AluJo SINE Alu -101 211 138 758 200 0 8 chrX 49932478 49932608 -127041532 - AluJo SINE Alu -178 134 6 1537 162 18 128 chrX 49932809 49933198 -127040942 - MER7A DNA MER2_type -2 344 1 668 196 11 95 chrX 49933533 49933712 -127040428 + MER103 DNA DNA 2 165 -1 247 288 113 0 chrX 49933944 49934024 -127040116 - MIR SINE MIR -88 174 86 327 95 68 81 chrX 49935027 49935101 -127039039 + MLT1D LTR MaLR 1 73 -432 1109 254 169 16 chrX 49935138 49935571 -127038569 + MER101B LTR ERV1 33 531 -39 1614 161 75 42 chrX 49935619 49935954 -127038186 + MLT1D LTR MaLR 69 414 -91 1309 269 18 41 chrX 49935954 49936296 -127037844 - L1M3b LINE L1 -5701 580 247 845 230 36 5 chrX 49936300 49936522 -127037618 + L1M3b LINE L1 1273 1501 -4780 632 292 4 52 chrX 49936520 49936770 -127037370 - L1M3b LINE L1 -6036 245 8 * 466 260 49 79 chrX 50137814 50138043 -126836097 + MIR3 SINE MIR 1 220 -42 402 308 157 20 chrX 50138293 50138491 -126835649 - MIR SINE MIR -19 243 19 4512 165 25 60 chrX 50139128 50140081 -126834059 + L1MB8 LINE L1 5259 6178 0 318 268 31 11 chrX 50143210 50143317 -126830823 + MIR SINE MIR 65 150 -58 448 291 14 14 chrX 50143921 50144062 -126830078 + MIR SINE MIR 48 188 -74 220 196 65 0 chrX 50144942 50144988 -126829152 - MIR SINE MIR -96 166 118 277 275 84 54 chrX 50148531 50148698 -126825442 + MIR3 SINE MIR 33 204 -4 313 331 39 16 chrX 50149235 50149362 -126824778 - MIR SINE MIR -113 149 20 396 309 47 26 chrX 50149985 50150176 -126823964 + MIR SINE MIR 53 247 -15 308 320 80 8 chrX 50150663 50150788 -126823352 + L2 LINE L2 3134 3267 -5 1687 177 30 0 chrX 50151001 50151272 -126822868 + AluSx SINE Alu 1 279 -33 377 305 18 43 chrX 50151297 50151461 -126822679 + MIR SINE MIR 55 214 -48 836 209 0 6 chrX 50152361 50152533 -126821607 + L1P LINE L1 3299 3469 -2677 605 296 43 31 chrX 50153497 50153754 -126820386 - MIR SINE MIR 0 262 3 202 310 181 60 chrX 50153887 50154003 -126820137 - L3 LINE CR1 -22 1555 1426 406 277 179 36 chrX 50154056 50154251 -126819889 - MIR SINE MIR -6 256 34 744 270 147 0 chrX 50154354 50154586 -126819554 - MER102b DNA MER1_type -1089 339 64 459 52 0 0 chrX 50154586 50154644 -126819496 + (CA)n Simple_repeat Simple_repeat 2 59 0 744 270 147 0 chrX 50154644 50154670 -126819470 - MER102b DNA MER1_type -1364 64 43 2015 116 36 10 chrX 50154730 50154852 -126819288 + AluSq SINE Alu 1 118 -195 233 29 29 0 chrX 50154852 50154886 -126819254 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2015 116 36 10 chrX 50154886 50155065 -126819075 + AluSq SINE Alu 118 310 -3 244 266 139 70 chrX 50155067 50155225 -126818915 - L3 LINE CR1 -200 1377 1209 207 333 14 0 chrX 50155257 50155326 -126818814 - L3 LINE CR1 -495 1082 1013 786 185 40 65 chrX 50155340 50155540 -126818600 + MER2 DNA MER2_type 6 200 -145 218 246 29 29 chrX 50155659 50155728 -126818412 - L3 LINE CR1 -568 1009 941 197 275 29 43 chrX 50155732 50155801 -126818339 - L2 LINE L2 -2 3311 3244 324 330 39 10 chrX 50157752 50157855 -126816285 + MIR3 SINE MIR 8 113 -95 896 276 14 0 chrX 50157976 50158193 -126815947 + MIR SINE MIR 8 227 -35 535 277 230 14 chrX 50158525 50158738 -126815402 + MIR SINE MIR 4 262 0 462 291 8 0 chrX 50158856 50158990 -126815150 + MIR3 SINE MIR 65 199 -9 394 344 0 55 chrX 50159273 50159456 -126814684 + MIR3 SINE MIR 13 185 -23 1885 250 81 65 chrX 50159508 50160497 -126813643 + L2 LINE L2 2308 3310 -3 260 298 81 8 chrX 50160701 50160825 -126813315 + MIR SINE MIR 22 154 -108 282 230 32 127 chrX 50161927 50162053 -126812087 + L2 LINE L2 3153 3266 -6 1820 136 0 0 chrX 50162083 50162340 -126811800 - AluSq SINE Alu -56 257 1 4745 174 37 34 chrX 50163084 50164977 -126809163 + L1MB8 LINE L1 4282 6173 -5 230 75 50 0 chrX 50165837 50165877 -126808263 + (CAGAGA)n Simple_repeat Simple_repeat 4 45 0 207 0 0 0 chrX 50165969 50165992 -126808148 + (A)n Simple_repeat Simple_repeat 1 23 0 492 86 0 0 chrX 50170427 50170497 -126803643 + (CCG)n Simple_repeat Simple_repeat 2 71 0 664 48 0 29 chrX 50171574 50171677 -126802463 + (CTG)n Simple_repeat Simple_repeat 3 102 0 206 163 23 0 chrX 50172212 50172255 -126801885 + T-rich Low_complexity Low_complexity 2 45 0 304 348 0 0 chrX 50172528 50172663 -126801477 + G-rich Low_complexity Low_complexity 1 135 0 228 182 0 0 chrX 50173047 50173091 -126801049 + C-rich Low_complexity Low_complexity 4 47 0 296 318 95 50 chrX 50175420 50175599 -126798541 + L2 LINE L2 2518 2704 -610 3029 231 68 33 chrX 50175605 50176885 -126797255 - L1ME1 LINE L1 -7 6159 4835 804 309 113 21 chrX 50176888 50177432 -126796708 + L2 LINE L2 2688 3272 0 499 269 15 30 chrX 50177577 50177711 -126796429 - L2 LINE L2 0 3272 3141 264 237 0 70 chrX 50177926 50178040 -126796100 + L2 LINE L2 2639 2744 -570 871 232 40 119 chrX 50178052 50178422 -126795718 - MER102b DNA MER1_type 0 341 1 199 335 37 79 chrX 50178499 50178714 -126795426 + L2 LINE L2 2836 3041 -231 206 200 0 0 chrX 50178946 50178981 -126795159 - L2 LINE L2 -35 3237 3203 2232 110 0 0 chrX 50179033 50179323 -126794817 + AluSg SINE Alu 1 290 -20 421 287 2 9 chrX 50179469 50179594 -126794546 - MIR SINE MIR -41 167 41 227 308 38 50 chrX 50179778 50179937 -126794203 + MIR SINE MIR 57 213 -49 224 264 28 85 chrX 50179970 50180076 -126794064 - MIR SINE MIR -59 203 104 480 275 6 73 chrX 50180774 50180952 -126793188 - MIR SINE MIR -32 230 65 276 213 0 88 chrX 50182034 50182076 -126792064 - MIR SINE MIR -1 261 228 2021 151 0 10 chrX 50182076 50182410 -126791730 - AluSx SINE Alu 0 312 1 276 213 0 88 chrX 50182410 50182447 -126791693 - MIR SINE MIR -34 228 189 828 257 33 14 chrX 50182462 50182672 -126791468 - MIR SINE MIR -37 225 12 431 203 11 170 chrX 50183844 50183963 -126790177 - MIR SINE MIR -108 154 72 741 221 0 0 chrX 50183963 50184094 -126790046 - FLAM_A SINE Alu -2 131 1 431 203 11 170 chrX 50184094 50184156 -126789984 - MIR SINE MIR -190 72 2 236 275 66 11 chrX 50184929 50185020 -126789120 - MLT1K LTR MaLR -323 265 170 230 235 78 69 chrX 50186017 50186119 -126788021 - MIR SINE MIR -42 220 118 369 339 0 8 chrX 50186170 50186294 -126787846 + L2 LINE L2 3191 3313 0 461 250 205 6 chrX 50186389 50186545 -126787595 - MIR SINE MIR -48 214 28 293 356 0 41 chrX 50187213 50187359 -126786781 + L2 LINE L2 2910 3049 -223 250 296 63 63 chrX 50187646 50187751 -126786389 + MIR SINE MIR 4 111 -151 300 111 0 0 chrX 50187751 50187796 -126786344 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 250 296 63 63 chrX 50187796 50187849 -126786291 + MIR SINE MIR 110 162 -100 210 207 35 17 chrX 50187844 50187902 -126786238 + L2 LINE L2 3214 3272 0 * 2527 91 28 3 chrX 50187915 50188276 -126785864 - L1PA11 LINE L1 -2 6172 5803 626 187 42 169 chrX 50188310 50188594 -126785546 + MLT1A1 LTR MaLR 4 251 -114 311 272 81 15 chrX 50188651 50188787 -126785353 - MLT1J1 LTR MaLR -209 237 93 357 367 78 0 chrX 50188913 50189093 -126785047 - L2 LINE L2 -189 3083 2890 306 128 64 0 chrX 50189772 50189866 -126784274 + (TA)n Simple_repeat Simple_repeat 1 100 0 222 218 39 0 chrX 50189986 50190142 -126783998 + (TA)n Simple_repeat Simple_repeat 2 163 0 49 32 0 0 chrX 50190143 50190206 -126783934 + AT_rich Low_complexity Low_complexity 1 63 0 304 224 0 24 chrX 50190206 50190291 -126783849 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 219 69 0 0 chrX 50190711 50190740 -126783400 + (TTAGGG)n Simple_repeat Simple_repeat 1 29 0 191 309 198 19 chrX 50190749 50190911 -126783229 - L2 LINE L2 -417 2897 2707 239 362 61 63 chrX 50190961 50191497 -126782643 + L2 LINE L2 2728 3263 -9 213 39 0 0 chrX 50192255 50192281 -126781859 + (T)n Simple_repeat Simple_repeat 1 26 0 400 260 193 20 chrX 50193173 50193323 -126780817 + MER45A DNA AcHobo 2 177 -1 275 272 184 9 chrX 50194479 50194593 -126779547 + MIR SINE MIR 19 152 -56 4155 92 2 0 chrX 50194615 50195168 -126778972 + MER41A LTR ERV1 1 554 0 273 75 0 0 chrX 50195495 50195535 -126778605 + (TG)n Simple_repeat Simple_repeat 1 40 0 227 188 0 21 chrX 50195535 50195583 -126778557 + GA-rich Low_complexity Low_complexity 2 48 0 347 265 24 12 chrX 50195996 50196079 -126778061 + MIR SINE MIR 57 140 -68 2804 196 40 2 chrX 50196220 50196801 -126777339 - L1 LINE L1 -1801 4345 3743 1547 220 13 0 chrX 50196802 50197188 -126776952 - L1 LINE L1 -2964 3182 2792 * 5462 165 12 16 chrX 50197183 50197265 -126776875 + L1PB1 LINE L1 4320 4401 -1750 666 25 0 0 chrX 50197265 50197345 -126776795 + (CAATA)n Simple_repeat Simple_repeat 2 81 0 5462 165 12 16 chrX 50197345 50199099 -126775041 + L1PB1 LINE L1 4401 6150 -1 20815 119 10 2 chrX 50199230 50202479 -126771661 - L1M LINE L1 -755 5391 2148 7607 77 5 6 chrX 50202517 50204357 -126769783 - L1PA6 LINE L1 0 6154 4316 1912 49 72 0 chrX 50204357 50204617 -126769523 - L1PA4 LINE L1 0 6155 5873 2350 58 7 0 chrX 50204619 50204914 -126769226 - L1PA6 LINE L1 -1866 4280 3984 * 4751 103 3 3 chrX 50204908 50205610 -126768530 + L1PA6 LINE L1 3279 3980 -2166 10633 149 23 57 chrX 50205610 50208092 -126766048 - L1P3 LINE L1 -3984 2477 6 25 51 0 0 chrX 50208092 50208131 -126766009 + AT_rich Low_complexity Low_complexity 1 39 0 385 244 0 0 chrX 50208208 50208294 -126765846 - L1MD2 LINE L1 -79 6280 6195 838 219 112 9 chrX 50208298 50208522 -126765618 - L1MD2 LINE L1 -214 6145 5899 956 189 31 25 chrX 50208522 50208718 -126765422 - MSTB1 LTR MaLR 0 432 236 323 284 50 20 chrX 50208757 50208958 -126765182 + L1MDa LINE L1 2130 2336 -4204 * 808 178 19 13 chrX 50208956 50209113 -126765027 + L1MD2 LINE L1 5746 5903 -456 1324 204 28 60 chrX 50209113 50209431 -126764709 + MSTB1 LTR MaLR 1 308 -124 3240 135 30 7 chrX 50209432 50209994 -126764146 - L1MA4 LINE L1 -68 6232 5658 4446 186 32 26 chrX 50210001 50210063 -126764077 + L1PA16 LINE L1 4356 4416 -1884 2132 142 0 0 chrX 50210063 50210373 -126763767 + AluSx SINE Alu 1 310 -2 4446 186 32 26 chrX 50210373 50211558 -126762582 + L1PA16 LINE L1 4416 5611 -689 2358 254 92 28 chrX 50211556 50212494 -126761646 - L1MDb LINE L1 -4402 2004 1000 * 577 57 0 23 chrX 50212494 50212614 -126761526 - L1PA3 LINE L1 0 6155 6068 2358 254 92 28 chrX 50212614 50212847 -126761293 - L1MDb LINE L1 -5406 1000 783 835 148 106 5 chrX 50213213 50213402 -126760738 - L1MC3 LINE L1 -186 7599 7392 181 204 102 0 chrX 50213726 50213775 -126760365 + MER5C DNA MER1_type 30 83 -241 271 266 114 19 chrX 50214008 50214166 -126759974 + L1ME4a LINE L1 5725 5897 -224 1872 154 19 69 chrX 50214457 50214833 -126759307 + L1PA16 LINE L1 5801 6157 -9 2292 215 79 22 chrX 50215887 50216268 -126757872 - L1MC3 LINE L1 -17 7768 7335 977 200 10 10 chrX 50216268 50216473 -126757667 - L1PB4 LINE L1 -4 6152 5948 2292 215 79 22 chrX 50216473 50216724 -126757416 - L1MC3 LINE L1 -450 7335 7100 504 155 56 0 chrX 50216757 50216918 -126757222 + (TA)n Simple_repeat Simple_repeat 2 171 0 362 144 102 30 chrX 50216968 50217135 -126757005 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 1249 223 110 16 chrX 50217147 50217264 -126756876 + L1MC4a LINE L1 6952 7057 -751 2316 170 35 14 chrX 50217264 50217687 -126756453 + MSTB1 LTR MaLR 1 432 0 1249 223 110 16 chrX 50217687 50217941 -126756199 + L1MC4a LINE L1 7057 7358 -450 985 226 85 11 chrX 50217963 50218246 -126755894 - L1M4 LINE L1 -1886 4260 3957 * 9910 176 20 10 chrX 50218229 50220828 -126753312 - L1MA3 LINE L1 0 6305 3732 840 63 0 0 chrX 50220828 50220939 -126753201 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 1852 140 0 0 chrX 50220940 50221212 -126752928 - AluSg SINE Alu -38 272 1 9910 176 20 10 chrX 50221212 50221362 -126752778 - L1MA3 LINE L1 -2573 3732 3585 1476 178 65 54 chrX 50221362 50221733 -126752407 - THE1C LTR MaLR 0 375 1 9910 176 20 10 chrX 50221733 50222051 -126752089 - L1MA3 LINE L1 -2720 3585 3200 2115 113 3 0 chrX 50222051 50222361 -126751779 - L1PA7 LINE L1 -3 6151 5841 676 111 0 0 chrX 50222362 50222461 -126751679 - L1PA7 LINE L1 -242 5912 5814 42776 51 1 4 chrX 50222487 50228660 -126745480 - L1PA4 LINE L1 -4 6151 1 3941 74 0 4 chrX 50228661 50229187 -126744953 - L1PA7 LINE L1 -324 5830 5307 436 173 71 8 chrX 50229188 50229315 -126744825 - L1MA3 LINE L1 -2938 3208 3074 2073 250 29 19 chrX 50229318 50229998 -126744142 - L1M4 LINE L1 -2145 4001 3315 1545 249 11 29 chrX 50229995 50230063 -126744077 - L1M4 LINE L1 -3149 2997 2929 * 1104 174 0 14 chrX 50230063 50230270 -126743870 - L1PA13 LINE L1 -3 6160 5957 1545 249 11 29 chrX 50230270 50230728 -126743412 - L1M4 LINE L1 -3217 2929 2480 13670 160 12 18 chrX 50230743 50231731 -126742409 + Tigger1 DNA MER2_type 30 1022 -1396 9192 91 5 1 chrX 50231731 50233809 -126740331 - L1PA6 LINE L1 0 6154 4073 13670 160 12 18 chrX 50233809 50235223 -126738917 + Tigger1 DNA MER2_type 1022 2418 0 297 313 10 25 chrX 50235228 50235426 -126738714 - L1M4 LINE L1 -3671 2475 2281 3405 221 47 10 chrX 50235467 50236653 -126737487 - L1MB5 LINE L1 -36 6138 4910 1467 264 37 37 chrX 50236690 50237206 -126736934 - L1M4 LINE L1 -1100 5046 4531 4863 129 38 25 chrX 50237206 50238069 -126736071 + L1PA13 LINE L1 5284 6157 -6 244 200 118 0 chrX 50238105 50238190 -126735950 - L1M4 LINE L1 -1663 4483 4389 277 239 120 21 chrX 50238212 50238226 -126735914 - L1M4 LINE L1 -1736 4410 4399 4043 41 0 0 chrX 50238226 50238717 -126735423 - L1PA4 LINE L1 0 6155 5665 277 239 120 21 chrX 50238717 50238844 -126735296 - L1M4 LINE L1 -1747 4399 4255 2204 148 5 15 chrX 50238860 50239251 -126734889 - L1MA1 LINE L1 0 6302 5916 8991 172 13 5 chrX 50239252 50241571 -126732569 - L1MA1 LINE L1 -450 5852 3513 212 57 0 29 chrX 50241571 50241606 -126732534 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 10794 39 0 0 chrX 50241606 50243671 -126730469 - L1PA3 LINE L1 -24 6131 4066 * 17016 44 1 1 chrX 50243669 50245811 -126728329 + L1PA3 LINE L1 1913 4054 -2092 1538 222 16 9 chrX 50245809 50246255 -126727885 - L1MA1 LINE L1 -2619 3527 3079 * 1445 144 0 0 chrX 50246255 50246463 -126727677 - AluSp SINE Alu -16 297 90 505 243 13 33 chrX 50246476 50246628 -126727512 - L1MA1 LINE L1 -3241 2905 2757 705 88 0 0 chrX 50246634 50246725 -126727415 - AluSp SINE Alu -222 91 1 2745 228 24 9 chrX 50246728 50247403 -126726737 - L1 LINE L1 -3061 4504 3820 3124 125 10 29 chrX 50247403 50247890 -126726250 + LTR12 LTR ERV1 1 478 -236 17557 173 42 50 chrX 50247891 50249278 -126724862 - L1 LINE L1 -3740 3825 2428 1960 109 43 30 chrX 50249278 50249582 -126724558 - AluY SINE Alu -3 308 1 17557 173 42 50 chrX 50249582 50252030 -126722110 - L1 LINE L1 -5137 2428 13 1894 247 57 25 chrX 50252032 50252144 -126721996 - L1MCa LINE L1 -1876 4339 4232 252 59 0 0 chrX 50252144 50252178 -126721962 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 1894 247 57 25 chrX 50252178 50252697 -126721443 - L1MCa LINE L1 -1983 4232 3688 293 210 34 8 chrX 50252689 50252808 -126721332 + L1M4 LINE L1 3177 3298 -2848 * 403 284 9 23 chrX 50252833 50253051 -126721089 - L1MCa LINE L1 -2894 3321 3107 2399 198 62 0 chrX 50253058 50253557 -126720583 - L1MB2 LINE L1 -7 6662 6133 1353 96 0 108 chrX 50253558 50253798 -126720342 + AluY SINE Alu 93 306 -5 1807 192 36 22 chrX 50253806 50254432 -126719708 - L1MB2 LINE L1 -515 6154 5519 * 24540 156 10 16 chrX 50254419 50259583 -126714557 - L1PA8A LINE L1 -17 6429 1237 189 74 0 0 chrX 50259583 50259610 -126714530 + (TTG)n Simple_repeat Simple_repeat 1 27 0 24540 156 10 16 chrX 50259610 50260838 -126713302 - L1PA8A LINE L1 -5209 1237 3 1905 224 25 6 chrX 50260833 50261306 -126712834 - L1MB2 LINE L1 -1089 5555 5074 * 3192 257 68 28 chrX 50261319 50261341 -126712799 - L1MB2 LINE L1 -4149 2497 2477 234 0 0 0 chrX 50261341 50261367 -126712773 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3192 257 68 28 chrX 50261367 50263327 -126710813 - L1MB2 LINE L1 -4169 2477 352 325 342 86 59 chrX 50263335 50263639 -126710501 - L1M4c LINE L1 -6042 342 31 1167 242 93 19 chrX 50263650 50264299 -126709841 - L1MCa LINE L1 -3948 2267 1700 868 259 13 53 chrX 50264305 50264490 -126709650 - AluJb SINE Alu -12 290 120 1398 56 0 0 chrX 50264490 50264670 -126709470 + (TTC)n Simple_repeat Simple_repeat 1 180 0 868 259 13 53 chrX 50264670 50264785 -126709355 - AluJb SINE Alu -182 120 2 3817 169 43 4 chrX 50264797 50265589 -126708551 - L1MA4A LINE L1 -12 6291 5469 * 7262 43 0 0 chrX 50265572 50266854 -126707286 - L1PA4 LINE L1 0 6155 4871 4285 45 0 0 chrX 50266872 50267407 -126706733 - L1PA4 LINE L1 -1368 4778 4244 * 7507 53 2 4 chrX 50267403 50268375 -126705765 + L1P LINE L1 3221 4190 -1956 2011 163 13 54 chrX 50268370 50268993 -126705147 - L1MA4A LINE L1 -743 5403 4893 * 2178 252 49 42 chrX 50269009 50270557 -126703583 - L1MCb LINE L1 -4257 2308 305 900 227 45 42 chrX 50270555 50270841 -126703299 - L1MD3 LINE L1 -310 7685 7399 * 766 271 126 13 chrX 50270866 50271183 -126702957 - L1ME1 LINE L1 -55 6111 5759 378 289 42 40 chrX 50271311 50271448 -126702692 - MIR SINE MIR -62 146 14 627 209 120 6 chrX 50271849 50272007 -126702133 - MIR3 SINE MIR 0 208 33 480 188 38 105 chrX 50272780 50272913 -126701227 + MER20 DNA MER1_type 1 124 -95 518 252 0 8 chrX 50273019 50273146 -126700994 - MIR SINE MIR 0 262 137 362 351 6 11 chrX 50273888 50274119 -126700021 + GA-rich Low_complexity Low_complexity 1 229 0 469 313 117 17 chrX 50275180 50275359 -126698781 - MIR SINE MIR -19 243 47 279 200 0 129 chrX 50275470 50275555 -126698585 - MIR3 SINE MIR -2 206 133 5663 129 19 2 chrX 50275616 50276683 -126697457 + L1PA15 LINE L1 5089 6159 -6 416 293 85 18 chrX 50276930 50277094 -126697046 - MIR3 SINE MIR -28 180 6 891 248 34 0 chrX 50277583 50277789 -126696351 - MER58A DNA MER1_type -11 213 1 411 307 7 39 chrX 50277934 50278087 -126696053 - L2 LINE L2 -181 3091 2944 1336 183 38 24 chrX 50278088 50278378 -126695762 - L1MC3 LINE L1 -261 7524 7231 1052 296 61 102 chrX 50278403 50279369 -126694771 - L2 LINE L2 -858 2456 1531 329 322 25 0 chrX 50279471 50279589 -126694551 + GA-rich Low_complexity Low_complexity 1 121 0 299 273 68 0 chrX 50279600 50279688 -126694452 + L3 LINE CR1 1469 1562 -15 276 361 33 0 chrX 50280396 50280518 -126693622 - MIR3 SINE MIR -2 206 81 367 338 32 13 chrX 50280582 50280736 -126693404 + MIR SINE MIR 47 203 -59 343 194 47 108 chrX 50280849 50280978 -126693162 + MER103 DNA DNA 2 122 -44 184 179 0 0 chrX 50281037 50281065 -126693075 + L2 LINE L2 3261 3288 -25 468 51 0 0 chrX 50282062 50282121 -126692019 + (TA)n Simple_repeat Simple_repeat 2 60 0 472 294 31 46 chrX 50282767 50282961 -126691179 + MIR SINE MIR 18 208 -54 244 340 113 0 chrX 50283166 50283263 -126690877 + MIR SINE MIR 38 145 -63 222 308 77 0 chrX 50283577 50283668 -126690472 - MIR SINE MIR -29 233 136 365 331 43 29 chrX 50284151 50284290 -126689850 - MIR SINE MIR -110 152 12 460 386 28 6 chrX 50285088 50285264 -126688876 - MIR3 SINE MIR -8 200 21 285 206 134 21 chrX 50285381 50285478 -126688662 + MIR SINE MIR 108 215 -47 341 351 105 52 chrX 50285570 50285895 -126688245 + L1M4 LINE L1 82 423 -6119 3301 239 42 53 chrX 50285939 50287572 -126686568 + L1M4 LINE L1 492 2127 -4519 2210 170 63 2 chrX 50287572 50287966 -126686174 + MSTB LTR MaLR 1 418 -8 1217 220 45 43 chrX 50288034 50288144 -126685996 + L1M4 LINE L1 2387 2495 -4149 1743 171 23 34 chrX 50288144 50288531 -126685609 + L1MA3 LINE L1 5923 6305 0 1217 220 45 43 chrX 50288531 50289111 -126685029 + L1M4 LINE L1 2495 3079 -3565 183 42 0 0 chrX 50289111 50289135 -126685005 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1217 220 45 43 chrX 50289135 50289154 -126684986 + L1M4 LINE L1 3079 3096 -3548 27438 136 26 60 chrX 50289170 50292941 -126681199 + L1PA7 LINE L1 12 3910 -2244 294 29 0 0 chrX 50292941 50292976 -126681164 + (CAA)n Simple_repeat Simple_repeat 2 36 0 27438 136 26 60 chrX 50292976 50294630 -126679510 + L1PA7 LINE L1 3910 5170 -984 221 0 0 33 chrX 50294630 50294660 -126679480 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 27438 136 26 60 chrX 50294660 50295613 -126678527 + L1PA7 LINE L1 5170 6154 0 3564 273 120 7 chrX 50295601 50297333 -126676807 + L1M4 LINE L1 3081 5008 -1636 * 3779 199 45 29 chrX 50297338 50297805 -126676335 - L1PB4 LINE L1 0 6156 5698 2108 122 7 0 chrX 50297805 50298099 -126676041 - AluSx SINE Alu -16 296 1 3779 199 45 29 chrX 50298099 50298830 -126675310 - L1PB4 LINE L1 -458 5698 4940 3132 213 11 11 chrX 50298944 50299705 -126674435 - L1PB4 LINE L1 -1191 4955 4195 1997 222 20 17 chrX 50299703 50300353 -126673787 + L1M2 LINE L1 3805 4776 -1370 * 1143 197 34 30 chrX 50300365 50300660 -126673480 + L1M2 LINE L1 5319 5614 -698 670 242 6 0 chrX 50300669 50300826 -126673314 - L1MB3 LINE L1 -1797 4349 4192 * 1087 243 3 15 chrX 50300824 50301157 -126672983 + L1MB3 LINE L1 4375 4703 -1443 301 152 33 54 chrX 50301157 50301249 -126672891 + L1MC4 LINE L1 6614 6703 -1339 276 29 0 88 chrX 50301250 50301318 -126672822 + (TA)n Simple_repeat Simple_repeat 2 63 0 301 190 40 40 chrX 50301325 50301425 -126672715 + L1MC4 LINE L1 6604 6703 -1339 671 10 10 102 chrX 50301426 50301623 -126672517 + (TA)n Simple_repeat Simple_repeat 2 180 0 280 73 0 89 chrX 50301650 50301774 -126672366 + (TA)n Simple_repeat Simple_repeat 2 114 0 2482 185 16 14 chrX 50301774 50302443 -126671697 + L1PA4 LINE L1 4710 5386 -765 7242 47 3 0 chrX 50302443 50303918 -126670222 + L1PA4 LINE L1 4678 6155 0 2482 185 16 14 chrX 50303918 50304095 -126670045 + L1PA4 LINE L1 5386 5561 -590 1911 171 25 3 chrX 50304129 50304486 -126669654 + L1PB3 LINE L1 5776 6140 -14 2504 234 42 9 chrX 50304518 50305188 -126668952 + L1MB3 LINE L1 5353 6044 -139 1556 122 4 0 chrX 50305190 50305420 -126668720 + L1PA13 LINE L1 5927 6157 -6 568 126 55 16 chrX 50305420 50305542 -126668598 + L1MB3 LINE L1 6050 6181 -2 34 72 0 0 chrX 50305736 50305805 -126668335 + AT_rich Low_complexity Low_complexity 1 69 0 2181 77 4 0 chrX 50305862 50306136 -126668004 - AluY SINE Alu -15 296 22 462 271 36 18 chrX 50306941 50307107 -126667033 - L1ME LINE L1 -322 5799 5631 4635 110 95 30 chrX 50307122 50307894 -126666246 - LTR12 LTR ERV1 0 826 5 2452 205 34 24 chrX 50307910 50308506 -126665634 - pTR5 LTR ERV1 -1094 1344 743 634 315 31 19 chrX 50308506 50308763 -126665377 + MIR SINE MIR 1 260 -2 315 322 65 29 chrX 50308785 50309030 -126665110 - L1ME LINE L1 -513 5608 5355 282 246 62 45 chrX 50309098 50309377 -126664763 - L1ME4a LINE L1 -45 6076 5758 3258 224 34 68 chrX 50309385 50309767 -126664373 - L1MB7 LINE L1 -7 6177 5784 2315 106 0 3 chrX 50309767 50310079 -126664061 - AluY SINE Alu 0 311 1 3258 224 34 68 chrX 50310079 50310803 -126663337 - L1MB7 LINE L1 -400 5784 5037 406 160 0 0 chrX 50310803 50310878 -126663262 + L1MA3 LINE L1 6228 6302 -3 3258 224 34 68 chrX 50310878 50311536 -126662604 - L1MB7 LINE L1 -1147 5037 4490 1996 137 0 0 chrX 50311536 50311821 -126662319 + AluSx SINE Alu 5 289 -23 3258 224 34 68 chrX 50311821 50312065 -126662075 - L1MB7 LINE L1 -1694 4490 4239 26 0 0 0 chrX 50312065 50312091 -126662049 + AT_rich Low_complexity Low_complexity 1 26 0 957 155 22 11 chrX 50312091 50312272 -126661868 - L1MA3 LINE L1 -5 6300 6118 8095 232 31 13 chrX 50312295 50318027 -126656113 + L1PB2 LINE L1 3 4945 -1917 7362 46 0 1 chrX 50318024 50318963 -126655177 - L1PA4 LINE L1 -2496 3650 2713 * 14257 33 76 0 chrX 50318963 50321391 -126652749 + L1PA4 LINE L1 3652 6145 -10 3941 211 35 6 chrX 50321404 50322846 -126651294 + L1PB2 LINE L1 4932 6405 -462 801 116 8 0 chrX 50322846 50322960 -126651180 + L1PA10 LINE L1 6038 6159 -9 2977 125 8 2 chrX 50322979 50323451 -126650689 + L1PB2 LINE L1 6390 6864 -3 4934 175 12 6 chrX 50323457 50324602 -126649538 - L1MA2 LINE L1 -168 6136 4984 29231 126 24 18 chrX 50324608 50327084 -126647056 - L1PA7 LINE L1 0 6154 3695 279 0 0 0 chrX 50327084 50327115 -126647025 + (TG)n Simple_repeat Simple_repeat 2 32 0 29231 126 24 18 chrX 50327115 50330430 -126643710 - L1PA7 LINE L1 -2459 3695 327 1354 84 0 5 chrX 50330437 50330628 -126643512 - L1P LINE L1 -1248 4898 4709 1147 107 0 0 chrX 50330627 50330795 -126643345 + L1P LINE L1 4527 4694 -1452 * 9972 220 38 5 chrX 50330799 50332723 -126641417 - L1M1 LINE L1 -5561 2004 17 2396 239 59 88 chrX 50332729 50334065 -126640075 - L1MA2 LINE L1 -1881 4265 2970 330 305 94 40 chrX 50334065 50334388 -126639752 - L1M4c LINE L1 -4046 2913 2609 6009 129 16 3 chrX 50334391 50335359 -126638781 - L1MA1 LINE L1 -5 7716 6736 10605 209 20 16 chrX 50335468 50338783 -126635357 - L1MA1 LINE L1 -844 6721 3413 857 98 0 8 chrX 50338786 50338918 -126635222 - L1PA14 LINE L1 0 6161 6031 1055 245 23 39 chrX 50338937 50339370 -126634770 - L1M4c LINE L1 -5040 1815 1390 2276 223 55 42 chrX 50339385 50340009 -126634131 + LTR27 LTR ERV1 3 634 -2 1880 257 75 38 chrX 50340018 50340702 -126633438 - L1M4c LINE L1 -5477 1382 674 748 329 27 7 chrX 50340744 50341188 -126632952 - L1M4c LINE L1 -6324 535 1 * 805 216 20 31 chrX 50341172 50341474 -126632666 - L1M4 LINE L1 -728 5948 5649 1926 249 97 8 chrX 50343628 50344450 -126629690 - L1M4 LINE L1 -974 5670 4776 357 152 57 0 chrX 50344467 50344572 -126629568 + (TA)n Simple_repeat Simple_repeat 1 111 0 816 256 105 28 chrX 50344606 50345315 -126628825 - L1M4 LINE L1 -3593 3051 2284 3195 272 55 33 chrX 50345506 50346702 -126627438 - L1M4 LINE L1 -5042 1500 278 1004 264 47 61 chrX 50346883 50347243 -126626897 - MLT1L LTR MaLR -145 470 116 5825 117 13 11 chrX 50347255 50349128 -126625012 - L1PA14 LINE L1 0 6161 4283 1456 298 33 33 chrX 50349237 50349956 -126624184 + L1MDa LINE L1 1 1111 -5429 829 148 0 32 chrX 50349956 50350111 -126624029 + L1P LINE L1 3632 3781 -2365 * 1448 196 58 35 chrX 50350092 50350384 -126623756 + L1MDa LINE L1 1808 2113 -4427 2160 116 7 0 chrX 50350384 50350678 -126623462 - AluSx SINE Alu -16 296 1 1448 196 58 35 chrX 50350678 50350782 -126623358 + L1MDa LINE L1 2113 2213 -4327 860 246 39 25 chrX 50350777 50351223 -126622917 - L1M4 LINE L1 -3423 2959 2478 * 753 249 109 3 chrX 50351259 50351552 -126622588 - L1M4 LINE L1 -4961 1423 1100 405 303 8 17 chrX 50351553 50351672 -126622468 + MIR SINE MIR 23 140 -122 328 277 68 47 chrX 50351682 50351830 -126622310 + MLT1J LTR MaLR 1 151 -360 264 284 30 0 chrX 50351882 50351949 -126622191 + MLT1J LTR MaLR 239 307 -204 26418 135 34 65 chrX 50351999 50355206 -126618934 - L1PA7 LINE L1 0 6154 3250 6082 104 18 0 chrX 50355206 50356400 -126617740 - L1PA7 LINE L1 -3 6151 4948 26418 135 34 65 chrX 50356400 50359545 -126614595 - L1PA7 LINE L1 -2904 3250 9 387 320 108 5 chrX 50359728 50359922 -126614218 + MIR SINE MIR 49 262 0 1742 239 16 7 chrX 50360169 50360617 -126613523 - Charlie4a DNA MER1_type -18 490 39 348 344 86 7 chrX 50360764 50360915 -126613225 - MIR3 SINE MIR -23 185 23 734 333 79 32 chrX 50361089 50361560 -126612580 + L3 LINE CR1 422 914 -663 1074 311 81 5 chrX 50361624 50362032 -126612108 - MLT1J1 LTR MaLR -4 442 4 1112 294 86 22 chrX 50362092 50362283 -126611857 + L3 LINE CR1 1095 1272 -305 1079 228 20 94 chrX 50362283 50362677 -126611463 + MLT1A1 LTR MaLR 1 365 0 1112 294 86 22 chrX 50362677 50362937 -126611203 + L3 LINE CR1 1272 1575 -2 294 263 251 23 chrX 50363651 50363822 -126610318 - L2 LINE L2 0 3313 3104 * 393 303 224 21 chrX 50363808 50364098 -126610042 - L2 LINE L2 -472 2842 2494 195 286 0 0 chrX 50364174 50364216 -126609924 - L2 LINE L2 -565 2749 2708 1106 278 25 7 chrX 50365754 50366031 -126608109 - MER115 DNA AcHobo -7 686 405 813 220 63 120 chrX 50367070 50367452 -126606688 + MLT1A2 LTR MaLR 15 374 0 21 57 0 0 chrX 50367862 50367897 -126606243 + AT_rich Low_complexity Low_complexity 1 35 0 213 376 40 27 chrX 50367897 50368046 -126606094 + L2 LINE L2 2332 2482 -832 255 303 20 40 chrX 50368195 50368294 -126605846 - MLT1L LTR MaLR -348 267 171 422 296 111 17 chrX 50369264 50369436 -126604704 - L2 LINE L2 0 3313 3126 233 259 0 19 chrX 50369562 50369616 -126604524 + MLT1F1 LTR MaLR 70 122 -420 1648 311 56 43 chrX 50369644 50370267 -126603873 + MER45C DNA AcHobo 30 660 -293 1255 220 29 10 chrX 50370483 50370797 -126603343 + MER45B DNA AcHobo 721 1040 0 1429 240 137 8 chrX 50370802 50371189 -126602951 + MLT1F1 LTR MaLR 129 565 -2 323 296 86 67 chrX 50372464 50372974 -126601166 + L3 LINE CR1 702 1287 -290 481 270 16 48 chrX 50373291 50373480 -126600660 - L1MC4a LINE L1 -1866 5942 5760 277 325 92 0 chrX 50373485 50373605 -126600535 - L2 LINE L2 -560 2754 2624 593 301 72 17 chrX 50374256 50374492 -126599648 - MIR SINE MIR -13 249 1 2507 87 0 0 chrX 50374901 50375210 -126598930 + AluSc SINE Alu 1 309 0 455 292 12 31 chrX 50376529 50376690 -126597450 + MIR SINE MIR 105 262 0 384 303 98 0 chrX 50377064 50377186 -126596954 - MIR3 SINE MIR -61 147 14 2184 188 44 21 chrX 50377928 50378402 -126595738 + MER66B LTR ERV1 1 485 -1 489 194 30 22 chrX 50429229 50429363 -126544777 - L1MA10 LINE L1 -2 6332 6198 2772 245 18 18 chrX 50429403 50430278 -126543862 - L1ME1 LINE L1 -167 5999 5127 390 295 7 43 chrX 50430554 50430693 -126543447 + MIR3 SINE MIR 8 141 -67 2316 96 0 10 chrX 50430730 50431031 -126543109 + AluSx SINE Alu 1 298 -14 365 153 14 0 chrX 50431046 50431118 -126543022 + (TG)n Simple_repeat Simple_repeat 2 74 0 365 247 13 0 chrX 50431124 50431201 -126542939 - L2 LINE L2 -17 3255 3178 4539 153 23 13 chrX 50431735 50432996 -126541144 + L1MA3 LINE L1 4718 5991 -314 3005 196 69 21 chrX 50433100 50433799 -126540341 + L1MC2 LINE L1 5606 6337 -7 230 270 101 0 chrX 50433983 50434072 -126540068 - MIR SINE MIR -47 215 118 281 133 33 0 chrX 50434208 50434268 -126539872 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 234 0 0 0 chrX 50434366 50434392 -126539748 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3689 220 33 19 chrX 50434826 50436068 -126538072 - L1MB8 LINE L1 -5 6173 4916 868 229 5 25 chrX 50436064 50436265 -126537875 + L1MB8 LINE L1 4748 4944 -1202 * 1217 206 64 58 chrX 50436263 50436763 -126537377 - L1MB8 LINE L1 -2944 3202 2700 6785 56 1 1 chrX 50436888 50437749 -126536391 + L1PA5 LINE L1 5294 6154 0 8969 119 6 15 chrX 50437762 50439187 -126534953 - L1P LINE L1 -1718 4428 3017 626 112 0 0 chrX 50439187 50439285 -126534855 + L1P LINE L1 4423 4520 -1626 11936 58 3 7 chrX 50439386 50441716 -126532424 + L1PA5 LINE L1 3828 6154 0 302 304 59 7 chrX 50441719 50441854 -126532286 + L1M4 LINE L1 2956 3097 -3049 2363 220 39 60 chrX 50442118 50443755 -126530385 + L1MDa LINE L1 1763 3369 -3171 2056 98 13 53 chrX 50443766 50444084 -126530056 - AluSg SINE Alu -4 306 2 397 242 75 19 chrX 50444084 50444245 -126529895 + L1MDa LINE L1 4650 4819 -1721 301 273 0 23 chrX 50444247 50444335 -126529805 + L1MC4 LINE L1 6621 6706 -1336 * 320 311 0 0 chrX 50444276 50444366 -126529774 - L1MC4 LINE L1 -1339 6703 6614 1499 239 81 2 chrX 50444371 50444790 -126529350 + L1MDa LINE L1 4827 5278 -1262 1205 81 0 12 chrX 50444890 50445062 -126529078 + L1PA3 LINE L1 5983 6152 -3 28 0 0 0 chrX 50445062 50445090 -126529050 + AT_rich Low_complexity Low_complexity 1 28 0 3278 141 69 2 chrX 50445090 50445729 -126528411 - L1PBa LINE L1 -4519 2344 1663 1273 258 41 11 chrX 50445848 50446310 -126527830 - L1MDb LINE L1 -1740 4666 4191 190 307 51 80 chrX 50446836 50446973 -126527167 + MIR SINE MIR 80 212 -50 494 327 108 38 chrX 50447062 50447625 -126526515 + L2 LINE L2 2472 3092 -180 2350 201 68 28 chrX 50447774 50448410 -126525730 + L1MDa LINE L1 1328 1988 -4552 464 263 62 6 chrX 50448427 50448587 -126525553 + L1PBa LINE L1 6 174 -6689 589 302 50 70 chrX 50449388 50450235 -126523905 - HAL1 LINE L1 -856 1651 822 266 267 0 0 chrX 50450492 50450567 -126523573 - L1MDb LINE L1 -3381 3025 2951 316 214 0 14 chrX 50450571 50450641 -126523499 - L1MDb LINE L1 -4362 2044 1976 31 88 0 0 chrX 50450684 50450764 -126523376 + AT_rich Low_complexity Low_complexity 1 80 0 3235 140 19 44 chrX 50451205 50451562 -126522578 + HSMAR2 DNA Mariner 719 1057 -245 1977 130 0 7 chrX 50451562 50451846 -126522294 + AluSq SINE Alu 1 282 -31 3235 140 19 44 chrX 50451846 50452080 -126522060 + HSMAR2 DNA Mariner 1057 1295 -7 228 121 0 0 chrX 50452711 50452744 -126521396 - THE1A LTR MaLR 0 355 323 1940 138 21 6 chrX 50452774 50453099 -126521041 - THE1-int LTR MaLR 0 1580 1251 325 210 150 10 chrX 50453201 50453301 -126520839 - L1M4 LINE L1 -1139 5007 4894 5445 112 4 22 chrX 50453302 50454569 -126519571 - L1PA11 LINE L1 0 6174 4875 372 98 0 0 chrX 50454672 50454723 -126519417 - THE1-int LTR MaLR -340 1240 1190 333 29 6 6 chrX 50454723 50454777 -126519363 - THE1A LTR MaLR -310 54 1 287 234 39 0 chrX 50455222 50455299 -126518841 - MER116 DNA Mariner 0 80 1 2037 192 57 7 chrX 50455378 50455784 -126518356 - MSTB LTR MaLR 0 426 1 492 242 18 76 chrX 50456049 50456416 -126517724 - L1MDb LINE L1 -5300 1109 781 290 85 0 21 chrX 50456560 50456607 -126517533 + (GGA)n Simple_repeat Simple_repeat 1 46 0 237 159 0 0 chrX 50456598 50456642 -126517498 + GA-rich Low_complexity Low_complexity 1 44 0 * 1637 297 29 25 chrX 50457162 50457853 -126516287 - L1MCc LINE L1 -4887 1536 653 1031 291 45 50 chrX 50457951 50458333 -126515807 - L1MCc LINE L1 -5813 610 231 961 308 80 45 chrX 50458339 50459282 -126514858 - L1MDa LINE L1 -2485 4055 3080 369 301 97 32 chrX 50459432 50459786 -126514354 - L1MDa LINE L1 -3829 2711 2341 551 295 110 9 chrX 50459864 50460091 -126514049 + MIR SINE MIR 3 252 -10 25 0 0 0 chrX 50460326 50460351 -126513789 + AT_rich Low_complexity Low_complexity 1 25 0 555 224 281 5 chrX 50460758 50460950 -126513190 - MIR SINE MIR 0 262 18 1025 73 0 0 chrX 50461133 50461270 -126512870 - L1P LINE L1 -1593 4553 4417 16693 51 6 1 chrX 50461271 50463405 -126510735 + L1P LINE L1 2285 4428 -1718 3089 272 87 29 chrX 50463403 50465179 -126508961 - L1 LINE L1 -3324 2646 1047 * 1959 135 0 0 chrX 50465179 50465503 -126508637 - AluSg SINE Alu 0 324 1 3089 272 87 29 chrX 50465503 50466342 -126507798 - L1 LINE L1 -4923 1047 258 240 26 0 0 chrX 50466554 50466593 -126507547 + L1PA3 LINE L1 6117 6155 0 1234 56 6 34 chrX 50466781 50466960 -126507180 + L1PA4 LINE L1 5982 6155 0 389 293 93 21 chrX 50467339 50467479 -126506661 + L2 LINE L2 3115 3264 -8 777 247 33 31 chrX 50468204 50468584 -126505556 + LTR16A LTR ERVL 18 444 -6 287 218 39 13 chrX 50468789 50468867 -126505273 + HERVFH21 LTR ERV1 6 85 -6444 191 281 53 0 chrX 50468889 50468946 -126505194 - MIR SINE MIR -86 176 117 17240 108 1 9 chrX 50468951 50471581 -126502559 - L1PA8 LINE L1 -992 5154 2544 4329 90 12 3 chrX 50471574 50472248 -126501892 + L1PA8 LINE L1 5173 5861 -311 * 272 250 0 15 chrX 50472263 50472331 -126501809 - MIR SINE MIR -164 98 32 501 301 61 6 chrX 50472862 50473025 -126501115 + MER58A DNA MER1_type 7 178 -46 269 103 0 0 chrX 50473125 50473164 -126500976 + MER58A DNA MER1_type 172 210 -14 6006 20 0 3 chrX 50473164 50473864 -126500276 - L1PA2 LINE L1 -4 6151 5454 323 248 48 9 chrX 50473883 50473988 -126500152 - L1ME3A LINE L1 -214 5956 5848 21 57 0 0 chrX 50474078 50474113 -126500027 + AT_rich Low_complexity Low_complexity 1 35 0 29 60 0 0 chrX 50474146 50474196 -126499944 + AT_rich Low_complexity Low_complexity 1 50 0 26562 82 11 1 chrX 50474413 50478020 -126496120 + L1PA7 LINE L1 1 3643 -2503 2918 116 0 2 chrX 50478120 50478614 -126495526 + L1PA7 LINE L1 5185 5677 -477 7188 48 1 0 chrX 50478614 50479640 -126494500 + L1PA4 LINE L1 5161 6187 0 3381 81 2 6 chrX 50479640 50480111 -126494029 + L1PA7 LINE L1 5679 6147 -7 8241 216 42 15 chrX 50480114 50483516 -126490624 + L1MA8 LINE L1 2807 6291 0 2946 165 11 16 chrX 50483516 50484085 -126490055 + L1MB1 LINE L1 5601 6168 0 3552 44 2 0 chrX 50484159 50484592 -126489548 - L1PA5 LINE L1 -7 6147 5714 392 273 25 12 chrX 50484737 50484898 -126489242 - L1PA16 LINE L1 -106 6060 5898 315 0 0 0 chrX 50484945 50484980 -126489160 + (T)n Simple_repeat Simple_repeat 1 35 0 331 366 18 30 chrX 50485350 50485514 -126488626 + MER5B DNA MER1_type 17 178 0 324 0 0 0 chrX 50486364 50486400 -126487740 + (CA)n Simple_repeat Simple_repeat 2 37 0 186 337 107 30 chrX 50487299 50487468 -126486672 + L2 LINE L2 2870 3051 -221 509 251 86 34 chrX 50487672 50487847 -126486293 + MIR SINE MIR 7 190 -72 427 254 25 16 chrX 50488120 50488242 -126485898 - MIR3 SINE MIR -11 197 75 223 260 13 39 chrX 50488370 50488447 -126485693 - MIR SINE MIR -165 97 23 2286 170 9 41 chrX 50488571 50489035 -126485105 - LTR2 LTR ERV1 0 449 1 666 256 30 6 chrX 50489213 50489381 -126484759 + MIR SINE MIR 91 262 0 229 180 180 10 chrX 50489446 50489546 -126484594 + L1MEc LINE L1 2288 2404 -3992 370 296 56 32 chrX 50489882 50490007 -126484133 - L3 LINE CR1 -215 1362 1235 190 288 150 12 chrX 50490145 50490225 -126483915 - L2 LINE L2 -48 3224 3134 246 352 38 0 chrX 50490467 50490572 -126483568 - L2 LINE L2 -832 2482 2374 230 307 40 0 chrX 50490797 50490872 -126483268 + MER5A DNA MER1_type 7 84 -105 408 294 88 24 chrX 50490984 50491154 -126482986 - MIR3 SINE MIR -5 203 23 180 200 0 0 chrX 50491462 50491502 -126482638 + (TA)n Simple_repeat Simple_repeat 2 41 0 1957 274 28 6 chrX 50492260 50492753 -126481387 + L1MDa LINE L1 19 522 -6018 1507 261 49 42 chrX 50492931 50493197 -126480943 + L1PBa LINE L1 399 662 -6201 7178 55 2 8 chrX 50493197 50494574 -126479566 - L1PA5 LINE L1 -3 6151 4779 1507 261 49 42 chrX 50494574 50494882 -126479258 + L1PBa LINE L1 662 977 -5886 7126 173 30 4 chrX 50494887 50496294 -126477846 + L1PBa LINE L1 1339 2782 -4081 3994 207 4 0 chrX 50496296 50497118 -126477022 + L1MDa LINE L1 2504 3328 -3212 3041 28 0 0 chrX 50497115 50497474 -126476666 - L1P LINE L1 -1368 4778 4420 * 6780 30 1 6 chrX 50497469 50498634 -126475506 + L1PA3 LINE L1 4908 6064 -91 1128 70 0 0 chrX 50498737 50498928 -126475212 + L1PA7 LINE L1 5992 6182 0 799 225 101 42 chrX 50499027 50499454 -126474686 + L1MC5 LINE L1 7452 7903 -58 890 215 5 14 chrX 50499485 50499699 -126474441 + L1MD1 LINE L1 5625 5836 -406 309 153 35 0 chrX 50499706 50499801 -126474339 + AluSp/q SINE Alu 233 312 0 607 118 0 0 chrX 50499801 50499886 -126474254 + Tigger3b DNA MER2_type 340 424 -807 7575 206 19 13 chrX 50499989 50500985 -126473155 + L1PB1 LINE L1 3414 4403 -1748 225 65 0 0 chrX 50500985 50501016 -126473124 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7575 206 19 13 chrX 50501016 50502384 -126471756 + L1PB1 LINE L1 4403 5791 -360 331 266 0 43 chrX 50502427 50502521 -126471619 + L1MC4 LINE L1 6614 6703 -1339 1938 163 5 32 chrX 50502524 50502904 -126471236 + L1PB1 LINE L1 5782 6151 0 986 173 42 14 chrX 50502908 50503122 -126471018 + L1MDa LINE L1 1992 2211 -4329 4252 132 37 5 chrX 50503237 50503973 -126470167 + Tigger3b DNA MER2_type 470 1228 -3 467 164 0 0 chrX 50504023 50504090 -126470050 + Tigger7 DNA MER2_type 2421 2487 0 441 153 82 0 chrX 50504090 50504188 -126469952 + L1MDa LINE L1 2315 2420 -4120 * 7342 225 35 39 chrX 50504187 50506073 -126468067 - L1 LINE L1 -1891 5674 3795 7000 67 3 0 chrX 50506073 50507165 -126466975 - L1PA7 LINE L1 -3 6151 5058 7342 225 35 39 chrX 50507165 50507798 -126466342 - L1 LINE L1 -3770 3795 3161 852 232 62 33 chrX 50507797 50508318 -126465822 - L1 LINE L1 -3697 2337 1788 * 2302 294 59 23 chrX 50508487 50510584 -126463556 - L1 LINE L1 -4163 1872 159 4934 40 2 0 chrX 50510584 50511211 -126462929 + L1PA5 LINE L1 5554 6181 0 2302 294 59 23 chrX 50511211 50511365 -126462775 - L1 LINE L1 -5876 159 12 693 277 107 50 chrX 50511548 50512237 -126461903 - L1ME4a LINE L1 -104 6017 5297 231 267 13 40 chrX 50512781 50512856 -126461284 + MER5B DNA MER1_type 1 73 -105 445 303 56 11 chrX 50513519 50513697 -126460443 - MIR SINE MIR 0 262 77 677 343 30 0 chrX 50513739 50513975 -126460165 + MIR SINE MIR 20 262 0 332 300 98 17 chrX 50514317 50514525 -126459615 - MIR SINE MIR -17 245 16 261 272 0 3 chrX 50514761 50514824 -126459316 + MIR SINE MIR 40 101 -107 509 335 124 20 chrX 50514826 50515220 -126458920 + L2 LINE L2 2709 3139 -174 217 204 273 0 chrX 50515344 50515432 -126458708 - MER5A DNA MER1_type -77 112 1 288 287 11 11 chrX 50515791 50515885 -126458255 + MIR SINE MIR 153 246 -16 678 268 93 32 chrX 50516680 50516926 -126457214 - MIR SINE MIR 0 262 2 343 274 2 12 chrX 50517239 50517336 -126456804 - MIR SINE MIR -64 144 66 249 271 0 0 chrX 50517354 50517402 -126456738 - L2 LINE L2 -14 3299 3252 407 359 14 14 chrX 50518699 50518844 -126455296 - MIR3 SINE MIR -48 160 16 567 325 24 5 chrX 50519241 50519465 -126454675 - MIR SINE MIR 0 262 37 487 309 67 12 chrX 50519652 50519817 -126454323 + MIR3 SINE MIR 28 201 -7 336 295 159 62 chrX 50520291 50520518 -126453622 - L2 LINE L2 -5 3267 3019 5960 211 6 18 chrX 50520629 50521930 -126452210 - L1P LINE L1 -1329 4817 3532 5997 217 24 4 chrX 50521933 50523434 -126450706 + L1PA13 LINE L1 2031 3574 -3223 2191 108 3 3 chrX 50523434 50523730 -126450410 - AluSp SINE Alu -17 296 1 315 0 0 0 chrX 50523758 50523793 -126450347 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3034 170 24 56 chrX 50523794 50525328 -126448812 - L1PB2 LINE L1 -5 6146 4575 398 190 25 0 chrX 50525323 50525402 -126448738 + L1PA13 LINE L1 3557 3637 -3160 * 29 0 0 0 chrX 50525403 50525432 -126448708 + AT_rich Low_complexity Low_complexity 1 29 0 561 55 0 0 chrX 50525432 50525505 -126448635 - L1PA4 LINE L1 -3 6152 6080 832 20 0 0 chrX 50525505 50525603 -126448537 + L1PA4 LINE L1 5999 6096 -59 2693 208 19 8 chrX 50525613 50525815 -126448325 + L1PA13 LINE L1 3646 3844 -2953 306 0 0 0 chrX 50525815 50525849 -126448291 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2693 208 19 8 chrX 50525849 50526282 -126447858 + L1PA13 LINE L1 3844 4288 -2509 2217 147 20 2 chrX 50526281 50526682 -126447458 + L1M1 LINE L1 2349 2756 -4809 * 314 284 0 32 chrX 50526682 50526777 -126447363 - L1MC4 LINE L1 -1342 6700 6609 * 396 253 0 11 chrX 50526741 50526832 -126447308 + L1MC4 LINE L1 6614 6703 -1339 223 71 48 0 chrX 50526835 50526877 -126447263 + (TA)n Simple_repeat Simple_repeat 2 45 0 4640 131 34 11 chrX 50526878 50527727 -126446413 + L1M1 LINE L1 2760 3628 -3937 321 132 0 4 chrX 50527727 50527780 -126446360 - MSTA LTR MaLR -313 51 1 968 154 6 12 chrX 50527783 50527952 -126446188 - L1P4 LINE L1 -519 5647 5480 661 231 45 0 chrX 50527956 50528129 -126446011 + L1P4 LINE L1 5293 5472 -702 24 0 0 0 chrX 50528129 50528153 -126445987 + AT_rich Low_complexity Low_complexity 1 24 0 3299 23 0 0 chrX 50528153 50528539 -126445601 - L1PA3 LINE L1 0 6155 5770 6704 14 0 1 chrX 50528543 50529309 -126444831 - L1HS LINE L1 0 6155 5391 2487 208 27 52 chrX 50529294 50529483 -126444657 + L1MB7 LINE L1 5495 5687 -497 * 675 139 88 0 chrX 50529483 50529620 -126444520 + L1MA7 LINE L1 6143 6291 0 2487 208 27 52 chrX 50529620 50530128 -126444012 + L1MB7 LINE L1 5687 6175 -9 324 251 211 6 chrX 50530128 50530299 -126443841 + L1ME4a LINE L1 5726 5931 -190 383 0 21 0 chrX 50530944 50530991 -126443149 + (TA)n Simple_repeat Simple_repeat 1 48 0 1160 137 20 106 chrX 50530996 50531064 -126443076 + L1M1 LINE L1 2433 2505 -5060 1950 92 0 15 chrX 50531064 50531326 -126442814 + AluSc SINE Alu 50 307 -2 1160 137 20 106 chrX 50531326 50531549 -126442591 + L1M1 LINE L1 2505 2699 -4866 * 4206 199 27 18 chrX 50531546 50532693 -126441447 - L1MA4A LINE L1 -159 6144 4992 * 11642 195 31 12 chrX 50532691 50537597 -126436543 - L1PA13 LINE L1 -5 7596 2394 2204 107 0 0 chrX 50537597 50537895 -126436245 - AluY SINE Alu -13 298 1 11642 195 31 12 chrX 50537895 50540331 -126433809 - L1PA13 LINE L1 -5207 2394 5 4658 158 36 7 chrX 50540373 50541335 -126432805 + L1MA1 LINE L1 2491 3480 -4085 6720 216 14 53 chrX 50541536 50542128 -126432012 + L1MA1 LINE L1 3460 4074 -3491 180 77 0 0 chrX 50542128 50542154 -126431986 + (CAA)n Simple_repeat Simple_repeat 1 26 0 6720 216 14 53 chrX 50542154 50542789 -126431351 + L1MA1 LINE L1 4074 4732 -2833 2073 145 7 0 chrX 50542789 50543085 -126431055 + AluSg SINE Alu 1 298 -12 6720 216 14 53 chrX 50543085 50544134 -126430006 + L1MA1 LINE L1 4732 5645 -1920 * 25183 47 3 1 chrX 50544132 50548235 -126425905 - L1PA4 LINE L1 -3 6152 2046 5748 184 13 15 chrX 50548226 50550318 -126423822 + L1MA1 LINE L1 5637 7721 0 * 12356 204 24 8 chrX 50550317 50554596 -126419544 + L1MA3 LINE L1 3379 7724 0 245 284 63 11 chrX 50554760 50554855 -126419285 - MIR3 SINE MIR -3 205 106 276 263 50 0 chrX 50555099 50555179 -126418961 + L2 LINE L2 3222 3305 -8 343 313 99 25 chrX 50555277 50555520 -126418620 - L1ME4a LINE L1 -63 6058 5798 6350 26 0 0 chrX 50556279 50557050 -126417090 - L1PA3 LINE L1 -5 6150 5380 4122 30 0 0 chrX 50557046 50557573 -126416567 + L1PA3 LINE L1 4869 5395 -751 * 303 237 0 0 chrX 50557605 50557664 -126416476 + MER20 DNA MER1_type 1 59 -160 2662 139 67 0 chrX 50557683 50558194 -126415946 - L1MA2 LINE L1 0 6304 5760 10634 134 17 12 chrX 50558294 50561202 -126412938 - L1P3 LINE L1 -3528 2933 1 378 229 0 0 chrX 50561207 50561303 -126412837 - L1 LINE L1 -3650 2496 2401 3289 184 5 37 chrX 50561403 50562274 -126411866 - L1MA2 LINE L1 -646 5656 4837 1771 124 101 0 chrX 50562274 50562532 -126411608 - AluSx SINE Alu -28 284 1 3289 184 5 37 chrX 50562532 50562859 -126411281 - L1MA2 LINE L1 -1465 4837 4501 14256 97 8 59 chrX 50562865 50566144 -126407996 - L1PA7 LINE L1 -186 5968 2868 37778 80 3 3 chrX 50566244 50567010 -126407130 - L1P2 LINE L1 -477 5677 4912 2250 120 0 0 chrX 50567010 50567318 -126406822 - AluY SINE Alu -3 308 1 37778 80 3 3 chrX 50567318 50572229 -126401911 - L1P2 LINE L1 -1242 4912 2 277 281 0 62 chrX 50572249 50572345 -126401795 + L2 LINE L2 3182 3271 -1 272 351 99 8 chrX 50572651 50572782 -126401358 + MER5A DNA MER1_type 1 143 -46 287 164 35 0 chrX 50572939 50573008 -126401132 - L1MDb LINE L1 -5108 962 890 11316 179 31 8 chrX 50573113 50575380 -126398760 - L1PBa LINE L1 -4544 2319 1 5855 197 23 31 chrX 50575380 50576592 -126397548 - L1 LINE L1 -2347 5218 3998 1545 215 3 3 chrX 50576592 50576880 -126397260 - AluSx SINE Alu -24 288 1 5855 197 23 31 chrX 50576880 50578552 -126395588 - L1 LINE L1 -3567 3998 2359 1882 176 36 36 chrX 50578556 50578920 -126395220 - THE1B LTR MaLR 0 364 1 8533 109 129 0 chrX 50578920 50580320 -126393820 - THE1B-int LTR MaLR 0 1580 1 1330 204 46 11 chrX 50580320 50580604 -126393536 - THE1B LTR MaLR 0 364 71 5000 241 24 10 chrX 50580618 50581640 -126392500 - L1 LINE L1 -6283 1282 237 198 0 0 0 chrX 50581640 50581662 -126392478 + (CTG)n Simple_repeat Simple_repeat 3 24 0 5000 241 24 10 chrX 50581662 50581890 -126392250 - L1 LINE L1 -7328 237 14 * 25262 35 2 0 chrX 50581889 50586159 -126387981 - L1PA4 LINE L1 -244 5911 1634 206 314 49 10 chrX 50586267 50586369 -126387771 + MIR SINE MIR 101 206 -56 3843 219 69 10 chrX 50586491 50588011 -126386129 - L1MB7 LINE L1 -1 6183 4565 428 225 9 0 chrX 50588051 50588162 -126385978 - L1MB7 LINE L1 -1712 4434 4323 2863 143 8 0 chrX 50588176 50588659 -126385481 - L1MA1 LINE L1 0 7721 7235 18771 188 24 23 chrX 50588661 50589349 -126384791 - L1MA1 LINE L1 -565 7158 6472 348 24 0 0 chrX 50589349 50589390 -126384750 + (TAG)n Simple_repeat Simple_repeat 3 43 0 18771 188 24 23 chrX 50589390 50592382 -126381758 - L1MA1 LINE L1 -1251 6472 3483 201 39 0 0 chrX 50592382 50592408 -126381732 + (TG)n Simple_repeat Simple_repeat 1 26 0 18771 188 24 23 chrX 50592408 50595860 -126378280 - L1MA1 LINE L1 -4240 3483 18 1546 204 4 7 chrX 50596569 50596907 -126377233 - AluJb SINE Alu 0 341 5 352 276 98 0 chrX 50596926 50597049 -126377091 - MIR SINE MIR -75 187 53 2407 174 14 5 chrX 50597515 50597939 -126376201 - MSTA LTR MaLR 0 428 1 410 319 56 0 chrX 50598325 50598469 -126375671 - L2 LINE L2 0 3313 3162 1931 195 72 23 chrX 50598855 50599285 -126374855 + LTR1B LTR ERV1 375 825 -1 267 297 36 43 chrX 50599315 50599453 -126374687 - MIR SINE MIR -16 246 110 325 286 92 0 chrX 50599540 50599659 -126374481 + L3b LINE CR1 1317 1446 -137 550 367 103 14 chrX 50600036 50600548 -126373592 + L3 LINE CR1 949 1506 -71 787 191 81 10 chrX 50600549 50600758 -126373382 + L1M1 LINE L1 5141 5364 -782 * 4961 44 0 0 chrX 50600757 50601366 -126372774 - L1PA5 LINE L1 -1559 4587 3979 7261 47 1 0 chrX 50601366 50602930 -126371210 + L1PA5 LINE L1 4577 6143 -11 561 30 0 0 chrX 50602930 50602997 -126371143 + (TA)n Simple_repeat Simple_repeat 1 67 0 1186 152 49 0 chrX 50603017 50603241 -126370899 + L1M1 LINE L1 5369 5603 -699 1105 208 9 4 chrX 50603243 50603474 -126370666 + L1P3 LINE L1 4 235 -5640 329 193 0 0 chrX 50603475 50603532 -126370608 + L1P3 LINE L1 858 914 -4961 18039 159 22 36 chrX 50603541 50606006 -126368134 + L1P3 LINE L1 1254 3656 -2805 261 0 0 0 chrX 50606006 50606035 -126368105 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 18039 159 22 36 chrX 50606035 50607131 -126367009 + L1P3 LINE L1 3656 4766 -1695 465 117 104 0 chrX 50607139 50607216 -126366924 + MLT2A2 LTR ERVL 124 208 -245 203 200 0 0 chrX 50607237 50607272 -126366868 + (TA)n Simple_repeat Simple_repeat 2 36 0 243 289 0 0 chrX 50607272 50607362 -126366778 - L1MC4 LINE L1 -1339 6703 6614 284 77 77 19 chrX 50607377 50607429 -126366711 + MLT2A2 LTR ERVL 399 453 0 408 133 0 0 chrX 50607430 50607490 -126366650 + L1PA8A LINE L1 4529 4588 -1558 5210 106 2 15 chrX 50607508 50608337 -126365803 + L1PA8A LINE L1 4566 5375 -756 2104 139 0 0 chrX 50608337 50608639 -126365501 + AluSx SINE Alu 1 302 -10 5210 106 2 15 chrX 50608639 50609097 -126365043 + L1PA8A LINE L1 5375 5837 -294 285 243 27 68 chrX 50609146 50609220 -126364920 - MER2 DNA MER2_type -1 344 274 2020 149 6 0 chrX 50609221 50609550 -126364590 + L1PA8 LINE L1 5842 6172 0 4098 112 55 18 chrX 50609561 50610240 -126363900 + L1MA1 LINE L1 5592 6295 -7 1075 245 83 28 chrX 50610333 50610659 -126363481 + MER2 DNA MER2_type 2 345 0 4047 32 1 0 chrX 50610995 50611709 -126362431 - L1PA3 LINE L1 -413 5742 5028 3337 35 0 0 chrX 50611709 50612144 -126361996 + L1PA3 LINE L1 5743 6177 0 239 227 113 0 chrX 50612194 50612291 -126361849 - L1ME3A LINE L1 -5 6165 6058 617 242 42 81 chrX 50612307 50612567 -126361573 - L1ME3A LINE L1 -200 5970 5721 1306 150 65 39 chrX 50612569 50612829 -126361311 + MER68 LTR ERV1 3 269 -293 198 0 0 0 chrX 50614342 50614364 -126359776 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 256 353 110 15 chrX 50614654 50614790 -126359350 + MIR SINE MIR 3 151 -111 1612 285 22 0 chrX 50614792 50615332 -126358808 + L1MB3 LINE L1 4398 4949 -1197 9284 45 2 0 chrX 50615342 50616490 -126357650 - L1PA4 LINE L1 -1055 5091 3942 7553 28 2 1 chrX 50616491 50617550 -126356590 + L1PA4 LINE L1 5094 6153 -2 1942 181 31 34 chrX 50617551 50618277 -126355863 + L1MB3 LINE L1 4945 5667 -516 2775 173 23 30 chrX 50618315 50618889 -126355251 - L1PB4 LINE L1 -8 6148 5579 2582 168 16 4 chrX 50618889 50619375 -126354765 + L1MB3 LINE L1 5676 6181 -2 285 135 0 0 chrX 50619376 50619428 -126354712 + L1MB3 LINE L1 6132 6183 0 271 350 0 0 chrX 50619827 50619887 -126354253 + MER91A DNA MER1_type 1 60 -136 396 297 147 6 chrX 50621228 50621388 -126352752 + MIR3 SINE MIR 9 187 -21 273 172 0 0 chrX 50622483 50622547 -126351593 + CT-rich Low_complexity Low_complexity 2 65 0 312 48 0 0 chrX 50622547 50622589 -126351551 + (CA)n Simple_repeat Simple_repeat 1 42 0 1228 330 80 12 chrX 50622841 50622919 -126351221 - L2 LINE L2 -6 3307 3236 574 259 97 40 chrX 50622919 50623166 -126350974 - MIR SINE MIR 0 262 2 1228 330 80 12 chrX 50623166 50623869 -126350271 - L2 LINE L2 -77 3236 2463 272 27 27 0 chrX 50623914 50623951 -126350189 + (TC)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 50624017 50624045 -126350095 + AT_rich Low_complexity Low_complexity 1 28 0 286 383 25 0 chrX 50624058 50624178 -126349962 - L2 LINE L2 -1 3271 3149 426 20 0 0 chrX 50624247 50624298 -126349842 + (CA)n Simple_repeat Simple_repeat 2 52 0 448 229 99 75 chrX 50624449 50624650 -126349490 + MIR SINE MIR 6 211 -51 218 254 0 68 chrX 50625087 50625146 -126348994 - L3 LINE CR1 -2 1575 1521 1216 234 93 26 chrX 50625179 50625422 -126348718 - Charlie4a DNA MER1_type -1514 447 222 2170 152 86 5 chrX 50625422 50625818 -126348322 - MSTA LTR MaLR 0 428 1 8486 163 7 50 chrX 50625818 50627467 -126346673 - MSTA-int LTR MaLR 0 1580 4 2070 145 132 5 chrX 50627470 50627850 -126346290 - MSTA LTR MaLR 0 428 1 1216 234 93 26 chrX 50627850 50628020 -126346120 - Charlie4a DNA MER1_type -1740 221 1 296 332 116 58 chrX 50628067 50628567 -126345573 - L3 LINE CR1 -109 1468 940 404 129 0 0 chrX 50628904 50628966 -126345174 - MSTA LTR MaLR 0 428 367 869 305 28 4 chrX 50629125 50629374 -126344766 - MIR SINE MIR 0 262 8 417 346 8 0 chrX 50629436 50629566 -126344574 - MER5A DNA MER1_type -29 160 30 535 226 39 96 chrX 50630011 50630219 -126343921 - MIR SINE MIR -12 250 55 305 227 32 149 chrX 50630247 50630310 -126343830 + L1MEc LINE L1 1313 1349 -5047 11456 38 25 0 chrX 50630310 50632454 -126341686 + L1PA3 LINE L1 3991 6155 0 305 227 32 149 chrX 50632454 50632544 -126341596 + L1MEc LINE L1 1349 1448 -4948 440 313 116 17 chrX 50632783 50632964 -126341176 - MIR3 SINE MIR -58 150 4 1780 249 47 29 chrX 50633374 50633860 -126340280 - MLT1D LTR MaLR -10 495 1 208 373 0 0 chrX 50633862 50633921 -126340219 - L2 LINE L2 -99 3173 3115 350 332 208 16 chrX 50634090 50634470 -126339670 - L2 LINE L2 -544 2770 2318 220 307 128 21 chrX 50634778 50634946 -126339194 - MIR SINE MIR -41 221 36 486 278 12 37 chrX 50634949 50635111 -126339029 + MIR SINE MIR 104 261 -1 848 242 71 9 chrX 50635175 50635257 -126338883 + MER58A DNA MER1_type 1 77 -2343 192 40 0 0 chrX 50635257 50635282 -126338858 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 848 242 71 9 chrX 50635282 50635410 -126338730 + MER58A DNA MER1_type 77 224 0 306 50 0 0 chrX 50635465 50635505 -126338635 + (CA)n Simple_repeat Simple_repeat 1 40 0 1784 202 34 70 chrX 50637577 50638048 -126336092 + MLT1C LTR MaLR 8 461 -6 1901 150 4 0 chrX 50638727 50639049 -126335091 + AluSg SINE Alu 1 323 0 485 288 20 20 chrX 50639483 50639629 -126334511 - MIR SINE MIR -112 150 5 192 307 133 0 chrX 50639866 50639941 -126334199 - L2 LINE L2 -47 3225 3141 207 214 0 0 chrX 50641186 50641228 -126332912 - MIR SINE MIR -12 250 209 189 0 0 0 chrX 50641233 50641254 -126332886 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 296 184 68 117 chrX 50641390 50641553 -126332587 - MER112 DNA MER1_type -35 225 71 859 211 18 18 chrX 50641750 50641973 -126332167 + MER33 DNA MER1_type 1 215 -97 1943 109 0 11 chrX 50641973 50642247 -126331893 + AluSc SINE Alu 17 287 -22 252 0 0 0 chrX 50642249 50642277 -126331863 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 245 233 23 0 chrX 50642277 50642363 -126331777 + L1MC4 LINE L1 6616 6703 -1339 401 207 9 0 chrX 50642365 50642476 -126331664 + MER33 DNA MER1_type 213 324 0 1069 316 107 33 chrX 50642838 50643475 -126330665 - L3 LINE CR1