This directory contains GTF files for the main gene transcript sets where available. They are
sourced from the following gene model tables: ncbiRefSeq, refGene, ensGene, knownGene

Not all files are available for every assembly. For more information on the source tables
see the respective data track description page in the assembly. For example:

Information on the different gene models can also be found in our genes FAQ:


The files are created using the genePredToGtf utility with the additional -utr flag. Utilities
can be found in the following directory:

An example command is as follows:
    genePredToGtf -utr hg38 ncbiRefSeq hg38.ncbiRefSeq.gtf

Additional Resources

Information on GTF format and how it is related to GFF format:

Information about the different gene models available in the Genome Browser:

More information on how the files were generated:
      Name                      Last modified      Size  Description
Parent Directory - md5sum.txt 2020-09-10 12:36 49 mm39.ensGene.gtf.gz 2021-05-25 14:40 19M mm39.ncbiRefSeq.gtf.gz 2022-11-30 08:28 28M refGene.gtf.gz 2020-09-10 12:36 10M