This directory contains reciprocal-best netted chains for mm39-manPen1.

 - mm39.manPen1.rbest.net.gz: mm39-referenced recip.best net to manPen1.
 - mm39.manPen1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm39 to manPen1 through the recip.best net.

 - manPen1.mm39.rbest.net.gz: manPen1-referenced recip.best net.
 - manPen1.mm39.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm39.manPen1.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2021-03-15 15:26    -   
      md5sum.txt                  2020-11-24 00:26  244   
      mm39.manPen1.rbest.net.gz   2020-11-24 00:26   84M  
      mm39.manPen1.rbest.chain.gz 2020-11-24 00:26   54M  
      manPen1.mm39.rbest.chain.gz 2020-11-24 00:25   54M  
      manPen1.mm39.rbest.net.gz   2020-11-24 00:24  109M