This directory contains the Build 34 assembly of the mouse genome
(mm6, March 2005) from the Mouse Genome Sequencing Consortium. This
assembly was produced at NCBI.
Files included in this directory:
chr*.fa.gz: gzip compressed FASTA sequence of each chromosome.
Repeats (from RepeatMasker and Tandem Repeat Finder)
are in lower case while non-repeating sequence is in upper case.
RepeatMasker January 12 2005 version with RepBase
libraries: RepBase Update 9.11, RM database version 20050112
md5sum.txt - MD5 checksum of these files to verify correct transmission
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/mm6/chromosomes. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
To unpack the fa.gz files:
gunzip <file>.fa.gz
All the files in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory -
md5sum.txt 2005-04-15 22:20 1.9K
chrM.fa.gz 2005-03-14 12:22 5.3K
chr19_random.fa.gz 2005-03-14 12:24 360K
chr9_random.fa.gz 2005-03-14 12:24 402K
chr10_random.fa.gz 2005-03-14 12:24 419K
chr15_random.fa.gz 2005-03-14 12:24 546K
chr17_random.fa.gz 2005-03-14 12:24 594K
chrY.fa.gz 2005-03-14 12:22 618K
chr16_random.fa.gz 2005-03-14 12:24 668K
chr18_random.fa.gz 2005-03-14 12:24 689K
chr14_random.fa.gz 2005-03-14 12:24 788K
chr6_random.fa.gz 2005-03-14 12:24 869K
chr5_random.fa.gz 2005-03-14 12:24 1.0M
chr8_random.fa.gz 2005-03-14 12:24 1.0M
chr1_random.fa.gz 2005-03-14 12:24 1.0M
chr12_random.fa.gz 2005-03-14 12:24 1.1M
chr13_random.fa.gz 2005-03-14 12:24 1.4M
chr7_random.fa.gz 2005-03-14 12:24 1.4M
chr3_random.fa.gz 2005-03-14 12:24 1.6M
chrY_random.fa.gz 2005-03-14 12:24 8.1M
chrUn_random.fa.gz 2005-03-14 12:24 17M
chr19.fa.gz 2005-03-14 12:24 18M
chr17.fa.gz 2005-03-14 12:23 27M
chr18.fa.gz 2005-03-14 12:24 27M
chr16.fa.gz 2005-03-14 12:23 29M
chr15.fa.gz 2005-03-14 12:23 31M
chr13.fa.gz 2005-03-14 12:23 34M
chr12.fa.gz 2005-03-14 12:23 34M
chr14.fa.gz 2005-03-14 12:23 35M
chr11.fa.gz 2005-03-14 12:22 37M
chr9.fa.gz 2005-03-14 12:22 37M
chr8.fa.gz 2005-03-14 12:22 38M
chr10.fa.gz 2005-03-14 12:22 39M
chr7.fa.gz 2005-03-14 12:21 41M
chr6.fa.gz 2005-03-14 12:21 45M
chr5.fa.gz 2005-03-14 12:21 45M
chr4.fa.gz 2005-03-14 12:21 47M
chr3.fa.gz 2005-03-14 12:20 48M
chrX.fa.gz 2005-03-14 12:22 49M
chr2.fa.gz 2005-03-14 12:20 56M
chr1.fa.gz 2005-03-14 12:20 59M