This directory contains a dump of the UCSC genome annotation
database for the Apr. 2002 freeze of the SARS draft genome
assembly, based on sequence deposited into GenBank as of
14 April 2003. The files are updated nightly.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=sc1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
------------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/scApr2003/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the tables in this directory are freely usable for any purpose
except for the following:
softberryGene.txt and softberryPep.txt - Free for academic
and nonprofit use. Commercial users please contact
Softberry Inc. at http://www.softberry.com.
Name Last modified Size Description
Parent Directory -
xenoMrna.sql 2013-10-01 12:48 1.3K
xenoBlastzMrna.sql 2013-10-01 12:48 1.3K
tissue.sql 2013-10-01 12:48 332
source.sql 2013-10-01 12:48 332
softberryPep.sql 2013-10-01 12:48 332
softberryHom.sql 2013-10-01 12:48 381
softberryGene.sql 2013-10-01 12:48 752
sex.sql 2013-10-01 12:48 326
seq.sql 2013-10-01 12:48 594
pslTable.sql 2013-10-01 12:48 1.5K
protPredFile.sql 2013-10-01 12:48 355
protHomolog.sql 2013-10-01 12:48 619
productName.sql 2013-10-01 12:48 342
otherSARS.sql 2013-10-01 12:48 1.3K
organism.sql 2013-10-01 12:48 336
mrnaClone.sql 2013-10-01 12:48 338
library.sql 2013-10-01 12:48 334
keyword.sql 2013-10-01 12:48 334
history.sql 2013-10-01 12:48 533
hgFindSpec.sql 2013-10-01 12:48 825
grp.sql 2013-10-01 12:48 358
geneName.sql 2013-10-01 12:48 336
gcPercent.sql 2013-10-01 12:48 544
gbProtAnn.sql 2013-10-01 12:48 650
gbCdnaInfo.sql 2013-10-01 12:48 1.5K
extFile.sql 2013-10-01 12:48 440
development.sql 2013-10-01 12:48 342
description.sql 2013-10-01 12:48 342
chromInfo.sql 2013-10-01 12:48 394
chr1_viralProt.sql 2013-10-01 12:48 1.3K
cell.sql 2013-10-01 12:48 328
cds.sql 2013-10-01 12:48 326
author.sql 2013-10-01 12:48 332
all_mrna.sql 2013-10-01 12:48 1.3K
tableDescriptions.txt.gz 2008-05-18 03:16 3.8K
tableDescriptions.sql 2008-05-18 03:16 1.2K
trackDb.txt.gz 2007-03-08 07:54 4.0K
trackDb.sql 2007-03-08 07:54 2.0K
history.txt.gz 2005-07-14 05:11 278
hgFindSpec.txt.gz 2005-04-24 05:36 266
grp.txt.gz 2004-10-22 04:25 204
gbCdnaInfo.txt.gz 2004-09-28 17:12 3.5M
protPredFile.txt.gz 2003-06-20 08:40 238
protHomolog.txt.gz 2003-06-20 08:40 5.4K
xenoMrna.txt.gz 2003-05-23 14:45 80K
xenoBlastzMrna.txt.gz 2003-05-23 14:45 27K
tissue.txt.gz 2003-05-23 14:45 8.9K
source.txt.gz 2003-05-23 14:45 276K
softberryPep.txt.gz 2003-05-23 14:45 5.6K
softberryHom.txt.gz 2003-05-23 14:45 260
softberryGene.txt.gz 2003-05-23 14:45 223
sex.txt.gz 2003-05-23 14:45 203
seq.txt.gz 2003-05-23 14:45 3.2M
pslTable.txt.gz 2003-05-23 14:45 92
productName.txt.gz 2003-05-23 14:45 171K
otherSARS.txt.gz 2003-05-23 14:45 1.0K
organism.txt.gz 2003-05-23 14:45 208K
mrnaClone.txt.gz 2003-05-23 14:45 262K
library.txt.gz 2003-05-23 14:45 14K
keyword.txt.gz 2003-05-23 14:45 132K
geneName.txt.gz 2003-05-23 14:45 62K
gcPercent.txt.gz 2003-05-23 14:45 67
gbProtAnn.txt.gz 2003-05-23 14:45 704
extFile.txt.gz 2003-05-23 14:45 143
development.txt.gz 2003-05-23 14:45 8.2K
description.txt.gz 2003-05-23 14:45 2.7M
chromInfo.txt.gz 2003-05-23 14:45 65
chr1_viralProt.txt.gz 2003-05-23 14:45 2.1K
cell.txt.gz 2003-05-23 14:45 6.8K
cds.txt.gz 2003-05-23 14:45 263K
author.txt.gz 2003-05-23 14:45 710K
all_mrna.txt.gz 2003-05-23 14:45 80K