This directory contains reciprocal-best netted chains for susScr3-mm39.
- susScr3.mm39.rbest.net.gz: susScr3-referenced recip.best net to mm39.
- susScr3.mm39.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from susScr3 to mm39 through the recip.best net.
- mm39.susScr3.rbest.net.gz: mm39-referenced recip.best net.
- mm39.susScr3.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/susScr3.mm39.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2021-03-15 16:13 -
md5sum.txt 2020-11-24 20:54 244
mm39.susScr3.rbest.chain.gz 2020-11-24 20:52 49M
susScr3.mm39.rbest.chain.gz 2020-11-24 20:53 49M
mm39.susScr3.rbest.net.gz 2020-11-24 20:52 76M
susScr3.mm39.rbest.net.gz 2020-11-24 20:54 101M